Query 009641
Match_columns 530
No_of_seqs 267 out of 2635
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 15:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 1.8E-70 3.9E-75 498.4 34.4 387 20-481 59-445 (476)
2 KOG0338 ATP-dependent RNA heli 100.0 1.8E-67 3.9E-72 493.6 31.3 422 23-516 182-628 (691)
3 KOG0331 ATP-dependent RNA heli 100.0 4.1E-67 8.8E-72 509.1 32.7 367 34-469 97-472 (519)
4 KOG0345 ATP-dependent RNA heli 100.0 4.7E-64 1E-68 467.0 34.2 364 23-454 5-375 (567)
5 KOG0350 DEAD-box ATP-dependent 100.0 4.1E-64 9E-69 470.3 31.5 454 9-488 108-587 (620)
6 COG0513 SrmB Superfamily II DN 100.0 3.6E-63 7.8E-68 504.1 37.9 362 22-456 29-395 (513)
7 KOG0342 ATP-dependent RNA heli 100.0 2.5E-63 5.5E-68 465.4 33.3 364 34-467 88-458 (543)
8 KOG0343 RNA Helicase [RNA proc 100.0 4.3E-63 9.2E-68 468.3 32.6 364 20-454 67-434 (758)
9 KOG0340 ATP-dependent RNA heli 100.0 1E-62 2.3E-67 442.6 30.3 366 19-457 4-376 (442)
10 KOG0333 U5 snRNP-like RNA heli 100.0 1.9E-62 4.1E-67 461.6 30.0 389 17-454 240-636 (673)
11 KOG0328 Predicted ATP-dependen 100.0 1.9E-62 4.2E-67 427.4 26.6 363 18-455 23-386 (400)
12 PTZ00110 helicase; Provisional 100.0 4E-61 8.6E-66 494.1 40.6 378 16-469 124-508 (545)
13 PRK04837 ATP-dependent RNA hel 100.0 6.7E-61 1.4E-65 483.2 38.3 363 21-455 7-375 (423)
14 KOG0347 RNA helicase [RNA proc 100.0 3.9E-62 8.4E-67 461.7 21.8 396 16-480 175-609 (731)
15 PRK04537 ATP-dependent RNA hel 100.0 1E-59 2.3E-64 485.0 39.5 369 16-455 3-377 (572)
16 PLN00206 DEAD-box ATP-dependen 100.0 1.3E-59 2.8E-64 481.9 39.0 377 18-471 117-501 (518)
17 PRK11776 ATP-dependent RNA hel 100.0 1.6E-59 3.5E-64 478.3 38.6 359 21-455 3-362 (460)
18 PRK10590 ATP-dependent RNA hel 100.0 3.4E-59 7.4E-64 473.5 37.8 359 23-455 2-365 (456)
19 PRK11634 ATP-dependent RNA hel 100.0 9.5E-59 2.1E-63 480.1 40.9 358 23-455 7-365 (629)
20 KOG0346 RNA helicase [RNA proc 100.0 7.6E-60 1.7E-64 435.0 28.1 394 22-487 19-462 (569)
21 PRK11192 ATP-dependent RNA hel 100.0 2E-58 4.4E-63 467.6 38.5 359 23-455 2-365 (434)
22 KOG0326 ATP-dependent RNA heli 100.0 2.1E-60 4.5E-65 421.6 19.5 355 34-458 91-445 (459)
23 KOG0348 ATP-dependent RNA heli 100.0 6.6E-59 1.4E-63 438.5 29.7 377 24-453 133-564 (708)
24 PRK01297 ATP-dependent RNA hel 100.0 4.9E-57 1.1E-61 461.1 41.5 357 34-455 93-455 (475)
25 KOG0336 ATP-dependent RNA heli 100.0 1.1E-58 2.3E-63 423.5 24.6 378 29-478 221-604 (629)
26 KOG0335 ATP-dependent RNA heli 100.0 6.3E-57 1.4E-61 430.1 27.6 357 34-454 80-456 (482)
27 PTZ00424 helicase 45; Provisio 100.0 5.2E-55 1.1E-59 439.9 38.1 359 22-455 28-387 (401)
28 KOG0339 ATP-dependent RNA heli 100.0 3.1E-55 6.7E-60 410.9 29.9 380 15-470 216-600 (731)
29 KOG0332 ATP-dependent RNA heli 100.0 1.7E-54 3.6E-59 392.0 23.6 362 19-455 87-456 (477)
30 KOG0341 DEAD-box protein abstr 100.0 2.1E-55 4.4E-60 399.4 17.0 362 7-443 154-529 (610)
31 KOG0334 RNA helicase [RNA proc 100.0 5E-53 1.1E-57 430.9 27.6 387 17-480 360-754 (997)
32 TIGR03817 DECH_helic helicase/ 100.0 3E-51 6.5E-56 432.5 36.3 353 34-453 20-399 (742)
33 KOG0327 Translation initiation 100.0 1.2E-51 2.6E-56 377.0 24.7 359 21-455 25-383 (397)
34 KOG0337 ATP-dependent RNA heli 100.0 1.2E-51 2.7E-56 379.0 20.7 360 22-455 21-381 (529)
35 PLN03137 ATP-dependent DNA hel 100.0 2.1E-49 4.5E-54 414.9 39.9 346 35-454 444-799 (1195)
36 TIGR00614 recQ_fam ATP-depende 100.0 1.2E-49 2.5E-54 405.0 31.6 333 45-454 6-345 (470)
37 KOG4284 DEAD box protein [Tran 100.0 1.6E-50 3.5E-55 389.1 22.5 354 21-450 24-388 (980)
38 KOG0344 ATP-dependent RNA heli 100.0 3.8E-50 8.3E-55 385.8 24.1 384 18-469 128-519 (593)
39 PRK11057 ATP-dependent DNA hel 100.0 4.4E-48 9.6E-53 403.2 35.8 341 34-453 8-354 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 3.2E-47 7E-52 398.4 36.7 335 41-453 3-342 (591)
41 PRK13767 ATP-dependent helicas 100.0 9.9E-46 2.2E-50 398.5 35.7 346 34-441 17-397 (876)
42 PRK02362 ski2-like helicase; P 100.0 7E-46 1.5E-50 396.6 33.8 337 34-443 7-398 (737)
43 COG0514 RecQ Superfamily II DN 100.0 9.5E-45 2.1E-49 359.8 31.3 340 39-455 5-350 (590)
44 PRK00254 ski2-like helicase; P 100.0 1.8E-44 3.8E-49 384.8 32.9 335 34-443 7-389 (720)
45 COG1201 Lhr Lhr-like helicases 100.0 3.4E-44 7.4E-49 368.7 31.0 377 33-475 6-396 (814)
46 TIGR00580 mfd transcription-re 100.0 3.2E-43 7E-48 374.5 35.2 325 38-442 440-770 (926)
47 PRK01172 ski2-like helicase; P 100.0 5.1E-43 1.1E-47 372.3 31.4 344 34-451 7-388 (674)
48 PRK10917 ATP-dependent DNA hel 100.0 3.9E-42 8.4E-47 362.3 35.8 325 37-440 249-587 (681)
49 KOG0329 ATP-dependent RNA heli 100.0 4.3E-44 9.3E-49 308.2 15.4 312 29-444 44-357 (387)
50 TIGR00643 recG ATP-dependent D 100.0 6.9E-42 1.5E-46 358.2 35.4 328 37-440 223-564 (630)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.9E-42 1.1E-46 354.9 31.6 328 41-441 6-390 (844)
52 PRK09751 putative ATP-dependen 100.0 2.3E-41 5.1E-46 369.3 35.2 346 74-478 1-422 (1490)
53 PRK10689 transcription-repair 100.0 2.8E-41 6.1E-46 367.3 35.4 328 36-442 587-919 (1147)
54 COG1111 MPH1 ERCC4-like helica 100.0 7E-40 1.5E-44 310.4 32.0 335 47-453 12-494 (542)
55 PRK09401 reverse gyrase; Revie 100.0 8E-40 1.7E-44 356.7 34.8 316 41-414 71-410 (1176)
56 COG1202 Superfamily II helicas 100.0 8.2E-40 1.8E-44 312.0 22.0 346 25-442 192-553 (830)
57 COG1204 Superfamily II helicas 100.0 1.4E-38 2.9E-43 332.4 27.3 337 35-439 16-405 (766)
58 TIGR01054 rgy reverse gyrase. 100.0 1E-37 2.3E-42 340.8 34.6 315 38-413 66-408 (1171)
59 PHA02653 RNA helicase NPH-II; 100.0 1.6E-38 3.6E-43 327.4 25.6 323 49-449 159-521 (675)
60 KOG0352 ATP-dependent DNA heli 100.0 8.1E-39 1.8E-43 294.9 18.8 343 38-453 6-373 (641)
61 PRK14701 reverse gyrase; Provi 100.0 4.4E-38 9.6E-43 349.9 28.3 362 37-453 66-467 (1638)
62 TIGR01970 DEAH_box_HrpB ATP-de 100.0 9.2E-38 2E-42 329.6 29.1 304 62-445 10-339 (819)
63 PHA02558 uvsW UvsW helicase; P 100.0 1.2E-37 2.6E-42 318.4 27.2 303 48-434 112-444 (501)
64 TIGR01587 cas3_core CRISPR-ass 100.0 2.2E-37 4.7E-42 306.7 27.4 314 71-442 1-336 (358)
65 PRK11664 ATP-dependent RNA hel 100.0 1.1E-37 2.5E-42 329.8 26.2 304 62-445 13-342 (812)
66 PRK12898 secA preprotein trans 100.0 6.9E-37 1.5E-41 310.1 30.6 356 46-443 100-587 (656)
67 PRK09200 preprotein translocas 100.0 4.3E-37 9.4E-42 318.3 28.0 357 46-443 75-542 (790)
68 KOG0351 ATP-dependent DNA heli 100.0 1.9E-37 4.1E-42 325.7 25.5 338 40-454 254-604 (941)
69 TIGR03714 secA2 accessory Sec 100.0 3.5E-36 7.6E-41 308.5 30.0 358 46-444 67-539 (762)
70 TIGR00963 secA preprotein tran 100.0 8.1E-36 1.8E-40 303.7 31.1 357 46-444 53-519 (745)
71 KOG0952 DNA/RNA helicase MER3/ 100.0 9.4E-37 2E-41 309.4 22.5 419 43-527 103-595 (1230)
72 COG1205 Distinct helicase fami 100.0 8.4E-36 1.8E-40 316.0 29.7 346 35-442 55-422 (851)
73 KOG0354 DEAD-box like helicase 100.0 3.8E-36 8.3E-41 301.8 24.5 341 35-445 47-532 (746)
74 PRK13766 Hef nuclease; Provisi 100.0 9.5E-35 2.1E-39 315.0 34.5 323 48-443 13-480 (773)
75 TIGR00603 rad25 DNA repair hel 100.0 2.9E-35 6.3E-40 301.8 27.6 311 50-445 255-610 (732)
76 KOG0349 Putative DEAD-box RNA 100.0 2.3E-35 4.9E-40 272.5 21.3 290 104-448 289-621 (725)
77 TIGR03158 cas3_cyano CRISPR-as 100.0 6.5E-34 1.4E-38 278.3 29.7 311 54-427 1-357 (357)
78 KOG0353 ATP-dependent DNA heli 100.0 7.6E-35 1.6E-39 265.0 21.0 339 35-452 78-477 (695)
79 COG1200 RecG RecG-like helicas 100.0 6.8E-33 1.5E-37 274.5 28.6 328 38-443 251-592 (677)
80 PRK04914 ATP-dependent helicas 100.0 2.8E-31 6.1E-36 282.0 32.4 124 317-442 478-603 (956)
81 PRK13104 secA preprotein trans 100.0 4.3E-31 9.4E-36 272.9 29.2 356 46-443 79-588 (896)
82 COG1061 SSL2 DNA or RNA helica 100.0 1.9E-31 4E-36 267.3 25.4 296 50-428 36-375 (442)
83 PRK09694 helicase Cas3; Provis 100.0 3.1E-30 6.7E-35 272.5 34.8 335 49-431 285-664 (878)
84 PRK05580 primosome assembly pr 100.0 1.2E-30 2.7E-35 273.9 31.4 320 50-443 144-550 (679)
85 KOG0951 RNA helicase BRR2, DEA 100.0 3.5E-31 7.6E-36 272.4 26.0 358 34-454 295-714 (1674)
86 PRK11131 ATP-dependent RNA hel 100.0 2.8E-31 6.1E-36 285.6 26.5 299 62-445 82-414 (1294)
87 KOG0947 Cytoplasmic exosomal R 100.0 5.1E-31 1.1E-35 265.0 22.9 373 41-512 289-778 (1248)
88 KOG0948 Nuclear exosomal RNA h 100.0 2.5E-31 5.3E-36 261.0 16.3 369 44-514 124-595 (1041)
89 PRK12904 preprotein translocas 100.0 3.9E-30 8.5E-35 265.7 26.0 356 46-443 78-574 (830)
90 COG4581 Superfamily II RNA hel 100.0 4.4E-30 9.6E-35 268.4 23.6 361 40-488 110-575 (1041)
91 COG1197 Mfd Transcription-repa 100.0 4.2E-29 9E-34 261.2 30.2 327 36-442 580-913 (1139)
92 PRK12906 secA preprotein trans 100.0 9.3E-30 2E-34 261.9 24.9 356 46-443 77-554 (796)
93 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.4E-29 3.1E-34 273.6 26.4 318 46-445 60-407 (1283)
94 TIGR00595 priA primosomal prot 100.0 7.2E-29 1.6E-33 251.5 27.2 294 73-439 1-378 (505)
95 PRK11448 hsdR type I restricti 100.0 1.4E-28 3E-33 267.4 27.4 315 49-430 412-801 (1123)
96 PRK12899 secA preprotein trans 100.0 9.4E-28 2E-32 247.7 30.6 145 34-210 68-228 (970)
97 PRK13107 preprotein translocas 100.0 2.7E-28 5.7E-33 251.5 24.8 357 46-444 79-593 (908)
98 COG4098 comFA Superfamily II D 100.0 2E-27 4.4E-32 214.3 25.3 308 50-442 97-415 (441)
99 cd00268 DEADc DEAD-box helicas 100.0 5.8E-28 1.3E-32 219.6 22.3 197 34-294 5-202 (203)
100 KOG0950 DNA polymerase theta/e 100.0 1.5E-27 3.3E-32 241.8 21.6 351 36-453 209-622 (1008)
101 COG1110 Reverse gyrase [DNA re 99.9 1E-25 2.3E-30 229.7 27.7 319 46-413 79-416 (1187)
102 PLN03142 Probable chromatin-re 99.9 1E-25 2.3E-30 240.4 26.7 357 50-442 169-599 (1033)
103 TIGR01407 dinG_rel DnaQ family 99.9 1.3E-23 2.8E-28 228.0 30.3 401 32-442 228-814 (850)
104 PRK12900 secA preprotein trans 99.9 1.5E-24 3.3E-29 224.6 21.4 126 314-444 578-713 (1025)
105 COG0556 UvrB Helicase subunit 99.9 2.1E-23 4.6E-28 199.1 26.1 162 268-441 388-556 (663)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 2E-24 4.3E-29 190.4 17.6 148 52-226 1-148 (169)
107 COG1203 CRISPR-associated heli 99.9 5.9E-24 1.3E-28 225.8 22.7 344 50-443 195-551 (733)
108 TIGR00631 uvrb excinuclease AB 99.9 3.1E-22 6.7E-27 207.9 31.8 126 316-445 424-556 (655)
109 PRK05298 excinuclease ABC subu 99.9 7.4E-21 1.6E-25 199.4 35.8 153 317-476 429-597 (652)
110 COG1643 HrpA HrpA-like helicas 99.9 1.1E-22 2.5E-27 212.0 20.2 304 63-444 59-389 (845)
111 KOG0385 Chromatin remodeling c 99.9 1.4E-21 3E-26 193.7 26.3 369 50-454 167-613 (971)
112 PRK12326 preprotein translocas 99.9 2.2E-21 4.7E-26 196.0 26.2 355 46-443 75-548 (764)
113 TIGR00348 hsdR type I site-spe 99.9 3.6E-21 7.7E-26 202.6 28.6 320 50-441 238-650 (667)
114 COG4096 HsdR Type I site-speci 99.9 3.7E-22 7.9E-27 201.1 20.0 303 49-429 164-525 (875)
115 PRK13103 secA preprotein trans 99.9 2.1E-21 4.5E-26 201.0 22.9 355 46-443 79-592 (913)
116 COG1198 PriA Primosomal protei 99.9 3.8E-21 8.2E-26 197.7 24.0 327 49-447 197-608 (730)
117 KOG0922 DEAH-box RNA helicase 99.9 2.1E-21 4.6E-26 191.1 21.1 307 62-445 59-393 (674)
118 PRK07246 bifunctional ATP-depe 99.9 4.2E-20 9.2E-25 197.6 32.9 379 44-442 240-783 (820)
119 KOG0949 Predicted helicase, DE 99.9 2.6E-20 5.6E-25 188.8 19.9 149 47-225 509-660 (1330)
120 KOG0384 Chromodomain-helicase 99.9 2E-20 4.3E-25 194.2 19.3 371 49-443 369-812 (1373)
121 CHL00122 secA preprotein trans 99.8 1.6E-19 3.5E-24 186.2 24.2 131 46-210 73-209 (870)
122 PRK12903 secA preprotein trans 99.8 5.2E-20 1.1E-24 188.6 20.3 355 46-443 75-540 (925)
123 KOG0387 Transcription-coupled 99.8 1.3E-19 2.9E-24 180.6 21.3 371 49-442 204-658 (923)
124 KOG1123 RNA polymerase II tran 99.8 4.6E-19 1E-23 167.9 22.2 314 49-447 301-658 (776)
125 TIGR03117 cas_csf4 CRISPR-asso 99.8 4.6E-18 1E-22 173.9 28.8 84 55-140 2-88 (636)
126 KOG0923 mRNA splicing factor A 99.8 2.2E-19 4.7E-24 175.4 17.7 298 67-442 278-606 (902)
127 PRK12902 secA preprotein trans 99.8 2.1E-18 4.5E-23 177.7 24.9 131 46-210 82-218 (939)
128 KOG0920 ATP-dependent RNA heli 99.8 7.6E-19 1.6E-23 182.8 21.8 309 66-444 185-546 (924)
129 PRK08074 bifunctional ATP-depe 99.8 9.9E-18 2.2E-22 182.9 30.8 159 47-211 255-469 (928)
130 COG4889 Predicted helicase [Ge 99.8 1.2E-19 2.7E-24 181.8 13.6 342 46-429 157-572 (1518)
131 KOG0389 SNF2 family DNA-depend 99.8 3.3E-18 7.2E-23 170.6 21.0 373 47-445 397-891 (941)
132 KOG0924 mRNA splicing factor A 99.8 2.6E-18 5.7E-23 168.3 19.8 308 51-442 357-697 (1042)
133 KOG0390 DNA repair protein, SN 99.8 1.4E-17 3.1E-22 170.5 25.2 94 359-452 619-719 (776)
134 KOG0926 DEAH-box RNA helicase 99.8 1.4E-18 3.1E-23 172.9 15.8 332 49-442 243-704 (1172)
135 smart00487 DEXDc DEAD-like hel 99.8 1.1E-17 2.4E-22 151.6 19.3 188 45-298 3-192 (201)
136 KOG0953 Mitochondrial RNA heli 99.8 4.1E-18 8.8E-23 163.7 15.9 278 69-452 191-486 (700)
137 cd00079 HELICc Helicase superf 99.8 2.2E-18 4.9E-23 144.8 12.3 118 318-438 12-131 (131)
138 KOG0392 SNF2 family DNA-depend 99.8 1.5E-17 3.3E-22 172.5 20.7 351 50-442 975-1454(1549)
139 PRK11747 dinG ATP-dependent DN 99.8 4.4E-16 9.4E-21 164.8 30.3 88 47-138 23-118 (697)
140 PF00271 Helicase_C: Helicase 99.8 3.4E-18 7.3E-23 129.1 8.1 77 351-430 2-78 (78)
141 KOG1000 Chromatin remodeling p 99.7 3.4E-16 7.3E-21 148.5 23.1 327 49-455 197-618 (689)
142 KOG0951 RNA helicase BRR2, DEA 99.7 2.2E-17 4.9E-22 171.6 15.6 322 51-453 1144-1505(1674)
143 PRK12901 secA preprotein trans 99.7 1.9E-16 4E-21 165.1 21.0 124 315-443 609-742 (1112)
144 KOG4150 Predicted ATP-dependen 99.7 1.8E-17 3.9E-22 159.4 12.2 342 39-442 275-640 (1034)
145 COG1199 DinG Rad3-related DNA 99.7 1.9E-15 4.2E-20 161.4 28.1 78 44-124 9-86 (654)
146 TIGR00604 rad3 DNA repair heli 99.7 2.4E-15 5.3E-20 160.6 27.1 79 46-125 6-84 (705)
147 KOG0925 mRNA splicing factor A 99.7 5.3E-15 1.2E-19 140.2 22.3 331 21-442 24-387 (699)
148 PF04851 ResIII: Type III rest 99.7 4.1E-16 8.9E-21 139.4 10.5 147 50-213 3-162 (184)
149 cd00046 DEXDc DEAD-like helica 99.6 1.3E-14 2.8E-19 123.5 17.0 120 70-214 1-120 (144)
150 TIGR02562 cas3_yersinia CRISPR 99.6 7E-14 1.5E-18 146.9 22.4 340 50-432 408-882 (1110)
151 smart00490 HELICc helicase sup 99.6 3E-15 6.4E-20 114.3 8.3 81 347-430 2-82 (82)
152 KOG0391 SNF2 family DNA-depend 99.6 9.4E-14 2E-18 143.7 21.3 107 333-442 1277-1387(1958)
153 KOG0386 Chromatin remodeling c 99.6 2.3E-14 5.1E-19 146.9 15.2 356 49-439 393-833 (1157)
154 KOG0388 SNF2 family DNA-depend 99.6 2.9E-13 6.2E-18 133.9 19.5 120 316-438 1026-1148(1185)
155 PF06862 DUF1253: Protein of u 99.5 9.4E-12 2E-16 121.6 28.3 337 97-453 33-426 (442)
156 PRK14873 primosome assembly pr 99.5 2.2E-12 4.7E-17 134.4 24.6 105 72-208 163-268 (665)
157 KOG1002 Nucleotide excision re 99.5 9.4E-13 2E-17 125.4 18.7 110 333-445 639-752 (791)
158 KOG4439 RNA polymerase II tran 99.5 2.4E-12 5.2E-17 127.6 19.3 117 319-438 730-852 (901)
159 smart00488 DEXDc2 DEAD-like he 99.5 4.5E-13 9.7E-18 127.0 12.2 79 46-125 5-85 (289)
160 smart00489 DEXDc3 DEAD-like he 99.5 4.5E-13 9.7E-18 127.0 12.2 79 46-125 5-85 (289)
161 COG0653 SecA Preprotein transl 99.4 7.9E-12 1.7E-16 129.2 19.5 356 46-443 77-546 (822)
162 KOG2340 Uncharacterized conser 99.3 3.2E-11 7E-16 116.1 16.5 381 49-452 215-678 (698)
163 PF07652 Flavi_DEAD: Flaviviru 99.3 1.4E-11 3.1E-16 100.1 11.7 105 68-209 3-107 (148)
164 PF02399 Herpes_ori_bp: Origin 99.3 2.5E-10 5.4E-15 117.6 21.9 294 70-442 50-388 (824)
165 COG0553 HepA Superfamily II DN 99.3 3.8E-11 8.2E-16 133.9 17.5 123 318-443 692-823 (866)
166 PF00176 SNF2_N: SNF2 family N 99.2 1.7E-10 3.7E-15 111.6 11.0 131 54-210 1-147 (299)
167 COG0610 Type I site-specific r 99.1 1.5E-08 3.3E-13 110.8 26.2 114 69-209 273-388 (962)
168 KOG1015 Transcription regulato 99.1 6.2E-09 1.3E-13 106.9 20.0 118 321-438 1129-1271(1567)
169 KOG0921 Dosage compensation co 99.1 6.6E-10 1.4E-14 113.3 12.3 388 6-444 315-776 (1282)
170 PF07517 SecA_DEAD: SecA DEAD- 99.1 1.6E-09 3.5E-14 99.8 13.7 132 45-210 73-210 (266)
171 KOG0952 DNA/RNA helicase MER3/ 98.9 1.8E-10 3.9E-15 119.5 0.2 156 34-219 907-1067(1230)
172 PRK15483 type III restriction- 98.6 4.5E-07 9.7E-12 96.8 13.8 44 385-428 501-544 (986)
173 PF13086 AAA_11: AAA domain; P 98.6 1.1E-07 2.4E-12 88.4 7.9 69 50-123 1-75 (236)
174 PF13307 Helicase_C_2: Helicas 98.6 1.5E-07 3.4E-12 81.8 7.2 108 330-441 7-149 (167)
175 KOG1016 Predicted DNA helicase 98.5 5.8E-06 1.3E-10 83.9 18.2 111 333-443 720-848 (1387)
176 KOG1132 Helicase of the DEAD s 98.4 1.2E-06 2.6E-11 90.5 9.2 162 45-210 17-260 (945)
177 TIGR00596 rad1 DNA repair prot 98.3 7.3E-06 1.6E-10 87.6 13.7 50 171-221 6-55 (814)
178 KOG1802 RNA helicase nonsense 98.2 6.1E-06 1.3E-10 82.6 10.1 84 42-136 402-485 (935)
179 KOG1001 Helicase-like transcri 98.2 1.3E-05 2.7E-10 83.9 12.0 101 334-437 541-643 (674)
180 PF13604 AAA_30: AAA domain; P 98.2 6E-06 1.3E-10 73.9 7.7 65 50-120 1-65 (196)
181 PF13245 AAA_19: Part of AAA d 98.1 1.2E-05 2.6E-10 59.3 7.3 52 70-121 11-62 (76)
182 KOG1803 DNA helicase [Replicat 98.1 5.5E-06 1.2E-10 82.5 6.3 67 49-122 184-250 (649)
183 PF02562 PhoH: PhoH-like prote 98.1 3.6E-06 7.9E-11 74.6 4.4 59 49-113 3-61 (205)
184 PF12340 DUF3638: Protein of u 98.0 5.2E-05 1.1E-09 67.8 11.1 122 46-186 20-144 (229)
185 TIGR00376 DNA helicase, putati 98.0 3.5E-05 7.5E-10 81.4 11.6 69 49-124 156-224 (637)
186 PF09848 DUF2075: Uncharacteri 98.0 2E-05 4.4E-10 77.6 9.0 95 71-211 3-97 (352)
187 COG3587 Restriction endonuclea 98.0 0.00024 5.2E-09 73.8 16.1 44 385-428 483-526 (985)
188 PF13872 AAA_34: P-loop contai 98.0 3E-05 6.5E-10 72.0 8.3 134 50-212 37-187 (303)
189 KOG1805 DNA replication helica 97.8 0.00028 6.1E-09 74.3 12.1 152 35-210 658-809 (1100)
190 smart00492 HELICc3 helicase su 97.7 0.00017 3.7E-09 60.4 8.7 46 368-413 30-78 (141)
191 KOG1131 RNA polymerase II tran 97.7 0.00017 3.6E-09 70.6 9.3 79 46-124 12-90 (755)
192 PF00580 UvrD-helicase: UvrD/R 97.7 9.8E-05 2.1E-09 71.8 8.2 70 51-126 1-70 (315)
193 PRK10536 hypothetical protein; 97.7 8.8E-05 1.9E-09 67.7 6.5 61 46-112 55-115 (262)
194 smart00491 HELICc2 helicase su 97.6 0.00025 5.5E-09 59.4 8.0 69 372-440 31-137 (142)
195 TIGR01448 recD_rel helicase, p 97.5 0.00077 1.7E-08 72.5 11.4 72 39-117 313-384 (720)
196 PRK10875 recD exonuclease V su 97.5 0.00069 1.5E-08 70.9 10.2 68 52-124 154-222 (615)
197 TIGR01075 uvrD DNA helicase II 97.4 0.00052 1.1E-08 74.4 9.1 72 49-126 3-74 (715)
198 TIGR02768 TraA_Ti Ti-type conj 97.4 0.002 4.3E-08 69.6 13.3 64 46-117 349-412 (744)
199 TIGR01447 recD exodeoxyribonuc 97.4 0.00091 2E-08 69.8 10.3 67 53-124 148-216 (586)
200 PRK11773 uvrD DNA-dependent he 97.4 0.00051 1.1E-08 74.4 8.5 72 49-126 8-79 (721)
201 PRK13889 conjugal transfer rel 97.3 0.0021 4.6E-08 70.6 12.1 64 45-116 342-405 (988)
202 PRK11054 helD DNA helicase IV; 97.3 0.0014 2.9E-08 69.9 10.3 82 49-136 195-276 (684)
203 PRK10919 ATP-dependent DNA hel 97.3 0.00068 1.5E-08 72.6 7.9 82 50-137 2-86 (672)
204 PRK06526 transposase; Provisio 97.2 0.0013 2.9E-08 61.1 8.6 73 22-116 68-140 (254)
205 PRK12723 flagellar biosynthesi 97.2 0.0038 8.2E-08 61.6 11.7 60 70-132 175-236 (388)
206 PRK13826 Dtr system oriT relax 97.2 0.0048 1E-07 68.3 13.4 75 35-117 367-441 (1102)
207 PRK08181 transposase; Validate 97.1 0.0033 7.1E-08 58.9 9.6 45 68-117 105-149 (269)
208 PRK04296 thymidine kinase; Pro 97.0 0.001 2.3E-08 59.1 5.5 37 69-109 2-38 (190)
209 PF13401 AAA_22: AAA domain; P 97.0 0.0086 1.9E-07 49.6 10.7 20 69-88 4-23 (131)
210 KOG0989 Replication factor C, 97.0 0.0022 4.7E-08 59.3 7.0 23 69-91 57-79 (346)
211 COG1484 DnaC DNA replication p 97.0 0.0034 7.5E-08 58.4 8.5 50 68-122 104-153 (254)
212 TIGR01074 rep ATP-dependent DN 96.9 0.0027 5.9E-08 68.5 8.5 82 50-137 1-85 (664)
213 PF05970 PIF1: PIF1-like helic 96.9 0.0021 4.5E-08 63.6 6.8 63 50-116 1-65 (364)
214 PF14617 CMS1: U3-containing 9 96.8 0.0042 9.1E-08 57.0 7.0 87 100-208 125-212 (252)
215 KOG0383 Predicted helicase [Ge 96.7 0.00015 3.2E-09 75.3 -3.0 78 317-398 614-696 (696)
216 TIGR01073 pcrA ATP-dependent D 96.7 0.0046 1E-07 67.3 7.9 82 49-136 3-86 (726)
217 PF00308 Bac_DnaA: Bacterial d 96.6 0.025 5.4E-07 51.6 10.9 50 70-122 35-84 (219)
218 PRK06921 hypothetical protein; 96.6 0.015 3.3E-07 54.6 9.8 44 69-116 117-160 (266)
219 KOG0298 DEAD box-containing he 96.6 0.006 1.3E-07 66.4 7.5 121 68-211 373-526 (1394)
220 COG1435 Tdk Thymidine kinase [ 96.5 0.01 2.2E-07 51.5 7.3 104 69-224 4-108 (201)
221 KOG1133 Helicase of the DEAD s 96.5 0.0022 4.8E-08 65.3 3.7 108 331-441 628-779 (821)
222 cd00009 AAA The AAA+ (ATPases 96.5 0.017 3.7E-07 48.6 8.9 18 69-86 19-36 (151)
223 PF13871 Helicase_C_4: Helicas 96.5 0.016 3.4E-07 54.0 8.9 66 376-441 52-126 (278)
224 PRK14974 cell division protein 96.2 0.055 1.2E-06 52.4 11.5 50 70-123 141-193 (336)
225 PF03354 Terminase_1: Phage Te 96.2 0.019 4.1E-07 59.2 8.6 75 53-127 1-80 (477)
226 COG1875 NYN ribonuclease and A 96.2 0.026 5.7E-07 53.7 8.5 66 46-114 224-289 (436)
227 cd01124 KaiC KaiC is a circadi 96.2 0.077 1.7E-06 47.0 11.5 48 72-124 2-49 (187)
228 PF00448 SRP54: SRP54-type pro 96.2 0.026 5.6E-07 50.4 8.2 58 72-136 4-63 (196)
229 PRK05707 DNA polymerase III su 96.1 0.036 7.8E-07 53.7 9.7 42 50-91 3-44 (328)
230 PRK07952 DNA replication prote 96.1 0.027 5.9E-07 51.9 8.4 40 70-114 100-139 (244)
231 PRK14722 flhF flagellar biosyn 96.1 0.037 8.1E-07 54.2 9.6 70 68-140 136-205 (374)
232 smart00382 AAA ATPases associa 96.0 0.0097 2.1E-07 49.7 4.8 41 69-113 2-42 (148)
233 PRK14087 dnaA chromosomal repl 96.0 0.052 1.1E-06 55.2 10.4 50 70-122 142-191 (450)
234 PRK08769 DNA polymerase III su 96.0 0.074 1.6E-06 51.2 10.8 43 48-90 2-47 (319)
235 PRK00149 dnaA chromosomal repl 95.9 0.056 1.2E-06 55.3 10.5 48 70-120 149-196 (450)
236 COG1419 FlhF Flagellar GTP-bin 95.9 0.033 7.1E-07 54.3 8.2 76 69-147 203-278 (407)
237 CHL00181 cbbX CbbX; Provisiona 95.9 0.059 1.3E-06 51.3 9.7 21 69-89 59-79 (287)
238 COG2256 MGS1 ATPase related to 95.9 0.03 6.5E-07 54.0 7.5 19 70-88 49-67 (436)
239 PF02456 Adeno_IVa2: Adenoviru 95.8 0.018 3.9E-07 53.4 5.6 38 72-114 90-130 (369)
240 PRK12377 putative replication 95.8 0.075 1.6E-06 49.2 9.8 45 70-119 102-146 (248)
241 TIGR02881 spore_V_K stage V sp 95.8 0.026 5.7E-07 53.1 7.1 20 69-88 42-61 (261)
242 PRK14712 conjugal transfer nic 95.8 0.061 1.3E-06 62.0 10.8 65 50-117 835-900 (1623)
243 PTZ00112 origin recognition co 95.7 0.078 1.7E-06 56.8 10.6 44 51-95 759-806 (1164)
244 cd01120 RecA-like_NTPases RecA 95.7 0.23 5E-06 42.5 12.4 37 72-112 2-38 (165)
245 PRK06893 DNA replication initi 95.7 0.063 1.4E-06 49.4 9.0 36 70-109 40-75 (229)
246 TIGR00362 DnaA chromosomal rep 95.7 0.072 1.6E-06 53.7 10.3 44 70-116 137-180 (405)
247 PRK08727 hypothetical protein; 95.7 0.055 1.2E-06 49.9 8.6 35 70-108 42-76 (233)
248 PRK10917 ATP-dependent DNA hel 95.7 0.056 1.2E-06 58.2 9.8 79 331-409 309-389 (681)
249 TIGR02785 addA_Gpos recombinat 95.7 0.029 6.2E-07 64.6 7.9 69 50-125 1-69 (1232)
250 PRK13709 conjugal transfer nic 95.7 0.087 1.9E-06 61.6 11.6 65 50-117 967-1032(1747)
251 cd01122 GP4d_helicase GP4d_hel 95.6 0.062 1.4E-06 50.9 9.0 57 63-123 24-80 (271)
252 PHA03333 putative ATPase subun 95.6 0.19 4E-06 52.6 12.6 74 50-127 169-242 (752)
253 COG3421 Uncharacterized protei 95.6 0.022 4.8E-07 57.4 5.8 117 74-211 2-126 (812)
254 PF01695 IstB_IS21: IstB-like 95.6 0.029 6.3E-07 49.2 5.9 45 68-117 46-90 (178)
255 PF05496 RuvB_N: Holliday junc 95.5 0.037 8E-07 49.6 6.4 18 70-87 51-68 (233)
256 COG1110 Reverse gyrase [DNA re 95.5 0.052 1.1E-06 58.4 8.3 75 320-395 113-191 (1187)
257 PRK05642 DNA replication initi 95.4 0.092 2E-06 48.4 9.1 36 70-109 46-81 (234)
258 PF05621 TniB: Bacterial TniB 95.4 0.076 1.6E-06 49.9 8.3 16 70-85 62-77 (302)
259 PRK08084 DNA replication initi 95.4 0.12 2.7E-06 47.6 9.6 37 69-109 45-81 (235)
260 PF05127 Helicase_RecD: Helica 95.4 0.0069 1.5E-07 52.4 1.2 53 73-128 1-53 (177)
261 PRK11889 flhF flagellar biosyn 95.3 0.21 4.6E-06 48.9 11.2 35 70-108 242-276 (436)
262 PHA02533 17 large terminase pr 95.3 0.14 3.1E-06 53.0 10.8 71 50-126 59-129 (534)
263 PRK05703 flhF flagellar biosyn 95.3 0.11 2.3E-06 52.5 9.6 24 69-92 221-244 (424)
264 PRK13894 conjugal transfer ATP 95.3 0.05 1.1E-06 52.5 7.0 66 41-113 125-190 (319)
265 PRK08116 hypothetical protein; 95.3 0.17 3.6E-06 47.7 10.4 44 70-118 115-158 (268)
266 COG1474 CDC6 Cdc6-related prot 95.3 0.09 1.9E-06 51.8 8.8 27 70-97 43-69 (366)
267 COG3973 Superfamily I DNA and 95.3 0.065 1.4E-06 54.4 7.8 59 68-126 225-285 (747)
268 COG1444 Predicted P-loop ATPas 95.3 0.16 3.5E-06 53.8 11.0 86 41-131 205-291 (758)
269 PF00004 AAA: ATPase family as 95.3 0.47 1E-05 39.0 12.1 16 198-213 59-74 (132)
270 COG4626 Phage terminase-like p 95.2 0.15 3.2E-06 51.8 10.1 81 46-127 58-144 (546)
271 PF13177 DNA_pol3_delta2: DNA 95.2 0.19 4E-06 43.4 9.6 23 70-92 20-42 (162)
272 TIGR03499 FlhF flagellar biosy 95.2 0.11 2.3E-06 49.4 8.9 23 69-91 194-216 (282)
273 PTZ00293 thymidine kinase; Pro 95.2 0.14 3E-06 45.8 8.9 40 69-112 4-43 (211)
274 KOG0701 dsRNA-specific nucleas 95.2 0.013 2.9E-07 66.5 3.0 96 332-429 292-398 (1606)
275 PHA02544 44 clamp loader, smal 95.2 0.23 5E-06 48.2 11.4 27 197-223 100-126 (316)
276 TIGR03420 DnaA_homol_Hda DnaA 95.1 0.16 3.4E-06 46.6 9.6 20 69-88 38-57 (226)
277 PRK11823 DNA repair protein Ra 95.1 0.16 3.5E-06 51.6 10.3 61 59-124 69-130 (446)
278 KOG0991 Replication factor C, 95.1 0.075 1.6E-06 47.4 6.7 19 70-88 49-67 (333)
279 PLN03025 replication factor C 95.0 0.13 2.8E-06 50.0 9.0 19 70-88 35-53 (319)
280 TIGR02760 TraI_TIGR conjugativ 95.0 0.16 3.5E-06 60.9 11.3 65 50-120 429-493 (1960)
281 PRK05580 primosome assembly pr 95.0 0.15 3.2E-06 55.0 10.1 77 332-411 190-266 (679)
282 PRK14956 DNA polymerase III su 95.0 0.095 2.1E-06 52.9 8.0 20 70-89 41-60 (484)
283 PRK07003 DNA polymerase III su 95.0 0.14 3.1E-06 54.3 9.5 19 70-88 39-57 (830)
284 PRK14086 dnaA chromosomal repl 95.0 0.27 5.8E-06 51.3 11.4 47 71-120 316-362 (617)
285 PRK13833 conjugal transfer pro 95.0 0.081 1.7E-06 50.9 7.3 64 43-113 123-186 (323)
286 KOG1133 Helicase of the DEAD s 94.9 0.28 6E-06 50.7 11.2 48 46-94 12-59 (821)
287 TIGR00643 recG ATP-dependent D 94.9 0.13 2.9E-06 54.9 9.6 79 331-409 283-363 (630)
288 PRK12422 chromosomal replicati 94.9 0.13 2.9E-06 52.1 9.0 42 70-116 142-183 (445)
289 TIGR02760 TraI_TIGR conjugativ 94.9 0.16 3.4E-06 61.0 10.9 63 50-117 1019-1084(1960)
290 TIGR00595 priA primosomal prot 94.9 0.15 3.2E-06 52.8 9.5 78 331-411 24-101 (505)
291 PRK00411 cdc6 cell division co 94.8 0.095 2.1E-06 52.7 7.9 37 69-107 55-91 (394)
292 PRK14873 primosome assembly pr 94.8 0.23 4.9E-06 53.0 10.8 93 317-411 171-265 (665)
293 PRK06645 DNA polymerase III su 94.8 0.075 1.6E-06 54.6 7.0 21 70-90 44-64 (507)
294 TIGR02880 cbbX_cfxQ probable R 94.7 0.11 2.4E-06 49.4 7.5 20 69-88 58-77 (284)
295 PRK08939 primosomal protein Dn 94.6 0.22 4.7E-06 47.8 9.3 45 69-118 156-200 (306)
296 PRK14964 DNA polymerase III su 94.6 0.31 6.8E-06 49.7 10.7 22 69-90 35-56 (491)
297 PRK09183 transposase/IS protei 94.5 0.18 3.9E-06 47.3 8.4 44 68-116 101-144 (259)
298 TIGR03877 thermo_KaiC_1 KaiC d 94.5 0.1 2.2E-06 48.3 6.7 62 59-125 10-72 (237)
299 TIGR00580 mfd transcription-re 94.5 0.21 4.5E-06 55.4 10.0 79 331-409 499-579 (926)
300 COG0593 DnaA ATPase involved i 94.5 0.2 4.4E-06 49.4 8.9 40 69-110 113-152 (408)
301 TIGR03015 pepcterm_ATPase puta 94.4 0.077 1.7E-06 50.2 5.7 38 50-87 23-61 (269)
302 COG4962 CpaF Flp pilus assembl 94.4 0.069 1.5E-06 50.8 5.2 63 46-116 153-215 (355)
303 TIGR02782 TrbB_P P-type conjug 94.4 0.16 3.4E-06 48.7 7.8 65 42-113 110-174 (299)
304 PRK14088 dnaA chromosomal repl 94.3 0.35 7.6E-06 49.2 10.4 45 70-117 131-175 (440)
305 PRK07994 DNA polymerase III su 94.3 0.1 2.3E-06 54.9 6.7 19 72-90 41-59 (647)
306 COG2805 PilT Tfp pilus assembl 94.2 0.097 2.1E-06 48.7 5.7 26 71-97 127-152 (353)
307 PRK14962 DNA polymerase III su 94.2 0.26 5.6E-06 50.4 9.4 19 70-88 37-55 (472)
308 PRK14723 flhF flagellar biosyn 94.2 0.22 4.7E-06 53.4 9.0 23 69-91 185-207 (767)
309 PRK14960 DNA polymerase III su 94.2 0.22 4.8E-06 52.2 8.8 21 70-90 38-58 (702)
310 PRK11331 5-methylcytosine-spec 94.2 0.14 3E-06 51.2 7.1 27 61-87 186-212 (459)
311 KOG0738 AAA+-type ATPase [Post 94.1 0.26 5.6E-06 47.5 8.4 17 70-86 246-262 (491)
312 PRK05973 replicative DNA helic 94.1 0.19 4.1E-06 46.1 7.4 85 35-124 25-114 (237)
313 PF06745 KaiC: KaiC; InterPro 94.1 0.09 1.9E-06 48.3 5.4 61 60-124 9-70 (226)
314 PRK10689 transcription-repair 94.1 0.28 6E-06 55.8 10.0 79 331-409 648-728 (1147)
315 PRK14961 DNA polymerase III su 94.0 0.22 4.8E-06 49.3 8.3 19 70-88 39-57 (363)
316 PRK06871 DNA polymerase III su 94.0 0.28 6E-06 47.4 8.6 41 51-91 3-46 (325)
317 PRK13342 recombination factor 94.0 0.37 8E-06 48.7 10.0 18 70-87 37-54 (413)
318 PRK06995 flhF flagellar biosyn 94.0 0.38 8.2E-06 48.9 9.9 23 69-91 256-278 (484)
319 PRK12402 replication factor C 93.9 0.35 7.5E-06 47.4 9.4 18 71-88 38-55 (337)
320 TIGR01425 SRP54_euk signal rec 93.9 0.77 1.7E-05 46.0 11.6 60 71-137 102-163 (429)
321 PRK14957 DNA polymerase III su 93.9 0.2 4.2E-06 52.0 7.7 20 71-90 40-59 (546)
322 PRK06835 DNA replication prote 93.9 0.16 3.4E-06 49.3 6.6 45 69-118 183-227 (329)
323 cd01121 Sms Sms (bacterial rad 93.8 0.29 6.3E-06 48.3 8.6 61 59-124 71-132 (372)
324 KOG2028 ATPase related to the 93.8 0.17 3.7E-06 48.2 6.4 47 70-120 163-209 (554)
325 PRK09111 DNA polymerase III su 93.8 0.4 8.6E-06 50.5 9.9 22 70-91 47-68 (598)
326 TIGR02012 tigrfam_recA protein 93.8 0.17 3.6E-06 48.6 6.6 53 58-114 42-96 (321)
327 COG2255 RuvB Holliday junction 93.8 0.25 5.3E-06 45.7 7.2 18 70-87 53-70 (332)
328 cd01394 radB RadB. The archaea 93.7 0.4 8.7E-06 43.7 8.8 46 59-108 8-54 (218)
329 PRK14963 DNA polymerase III su 93.7 0.37 7.9E-06 49.8 9.3 19 70-88 37-55 (504)
330 PRK08699 DNA polymerase III su 93.6 0.88 1.9E-05 44.1 11.4 42 51-92 2-44 (325)
331 PRK07993 DNA polymerase III su 93.6 0.31 6.7E-06 47.5 8.2 42 50-91 2-46 (334)
332 PRK12726 flagellar biosynthesi 93.5 0.48 1E-05 46.3 9.2 24 69-92 206-229 (407)
333 PRK06067 flagellar accessory p 93.5 0.43 9.3E-06 44.0 8.8 61 59-124 14-75 (234)
334 COG0513 SrmB Superfamily II DN 93.5 0.3 6.5E-06 50.8 8.4 71 335-409 102-180 (513)
335 PRK07471 DNA polymerase III su 93.5 0.75 1.6E-05 45.4 10.8 25 70-94 42-66 (365)
336 cd00983 recA RecA is a bacter 93.5 0.16 3.4E-06 48.9 5.8 53 58-114 42-96 (325)
337 PRK13341 recombination factor 93.4 0.57 1.2E-05 50.6 10.5 19 70-88 53-71 (725)
338 PRK14958 DNA polymerase III su 93.4 0.51 1.1E-05 48.8 9.8 21 70-90 39-59 (509)
339 COG1219 ClpX ATP-dependent pro 93.3 0.062 1.3E-06 50.2 2.7 20 68-87 96-115 (408)
340 PF05876 Terminase_GpA: Phage 93.3 0.16 3.5E-06 53.1 6.2 73 50-127 16-89 (557)
341 PHA03368 DNA packaging termina 93.3 1.3 2.9E-05 46.3 12.3 57 69-127 254-310 (738)
342 TIGR01547 phage_term_2 phage t 93.3 0.31 6.8E-06 49.0 8.1 58 72-130 4-62 (396)
343 PRK14955 DNA polymerase III su 93.3 0.25 5.4E-06 49.6 7.2 21 70-90 39-59 (397)
344 TIGR00959 ffh signal recogniti 93.2 0.95 2.1E-05 45.5 11.2 59 71-135 101-161 (428)
345 TIGR03878 thermo_KaiC_2 KaiC d 93.2 0.3 6.5E-06 45.8 7.2 40 65-108 32-71 (259)
346 PF13173 AAA_14: AAA domain 93.2 1.1 2.3E-05 36.9 9.8 17 69-85 2-18 (128)
347 PF06733 DEAD_2: DEAD_2; Inte 93.2 0.045 9.7E-07 47.9 1.6 49 162-211 109-159 (174)
348 PRK06964 DNA polymerase III su 93.2 0.63 1.4E-05 45.3 9.5 41 51-91 2-43 (342)
349 PRK14949 DNA polymerase III su 93.1 0.26 5.6E-06 53.4 7.4 19 71-89 40-58 (944)
350 TIGR00767 rho transcription te 93.1 0.28 6E-06 48.3 6.9 29 65-94 164-192 (415)
351 COG1223 Predicted ATPase (AAA+ 93.1 0.88 1.9E-05 41.5 9.4 17 69-85 151-167 (368)
352 cd00984 DnaB_C DnaB helicase C 93.0 0.31 6.8E-06 45.2 7.1 54 60-116 4-60 (242)
353 PRK07764 DNA polymerase III su 93.0 0.28 6.1E-06 53.6 7.5 23 70-92 38-60 (824)
354 TIGR00678 holB DNA polymerase 93.0 0.77 1.7E-05 40.7 9.3 19 70-88 15-33 (188)
355 PRK10867 signal recognition pa 93.0 1.3 2.9E-05 44.6 11.7 59 71-135 102-162 (433)
356 COG2804 PulE Type II secretory 92.9 0.15 3.3E-06 51.1 5.0 41 52-96 243-284 (500)
357 PF03796 DnaB_C: DnaB-like hel 92.9 0.4 8.8E-06 45.0 7.8 49 59-110 9-57 (259)
358 COG0210 UvrD Superfamily I DNA 92.9 0.26 5.6E-06 53.3 7.2 71 50-126 2-72 (655)
359 TIGR00064 ftsY signal recognit 92.8 0.92 2E-05 42.8 9.9 35 70-108 73-107 (272)
360 cd03115 SRP The signal recogni 92.8 1.4 3E-05 38.4 10.5 33 72-108 3-35 (173)
361 PRK09354 recA recombinase A; P 92.8 0.29 6.3E-06 47.5 6.6 52 59-114 48-101 (349)
362 cd01126 TraG_VirD4 The TraG/Tr 92.8 0.083 1.8E-06 52.9 3.0 48 71-124 1-48 (384)
363 PRK04195 replication factor C 92.8 0.52 1.1E-05 48.7 8.9 19 69-87 39-57 (482)
364 PRK08691 DNA polymerase III su 92.7 0.25 5.4E-06 52.2 6.4 20 70-89 39-58 (709)
365 PRK12323 DNA polymerase III su 92.7 0.37 8.1E-06 50.5 7.5 21 70-90 39-59 (700)
366 cd01130 VirB11-like_ATPase Typ 92.6 0.32 6.8E-06 43.1 6.2 34 50-86 9-42 (186)
367 PRK14959 DNA polymerase III su 92.6 0.44 9.5E-06 50.0 8.0 21 70-90 39-59 (624)
368 PF02534 T4SS-DNA_transf: Type 92.6 0.13 2.8E-06 53.1 4.3 49 70-124 45-93 (469)
369 KOG0733 Nuclear AAA ATPase (VC 92.5 0.51 1.1E-05 48.4 8.0 105 72-280 548-659 (802)
370 PRK04328 hypothetical protein; 92.5 0.35 7.6E-06 45.1 6.6 62 59-125 12-74 (249)
371 PRK14952 DNA polymerase III su 92.5 0.31 6.8E-06 51.0 6.9 20 71-90 37-56 (584)
372 PRK06090 DNA polymerase III su 92.5 0.53 1.2E-05 45.3 7.9 42 50-91 3-47 (319)
373 COG1198 PriA Primosomal protei 92.5 0.33 7.2E-06 51.8 7.1 92 315-409 226-319 (730)
374 cd01129 PulE-GspE PulE/GspE Th 92.4 0.33 7.2E-06 45.6 6.4 62 42-112 58-119 (264)
375 PRK00080 ruvB Holliday junctio 92.4 0.63 1.4E-05 45.4 8.6 18 70-87 52-69 (328)
376 PRK14951 DNA polymerase III su 92.2 0.43 9.3E-06 50.3 7.4 21 70-90 39-59 (618)
377 PRK07940 DNA polymerase III su 92.2 1.4 3.1E-05 43.9 10.8 21 69-89 36-56 (394)
378 PRK10416 signal recognition pa 92.2 2.8 6.1E-05 40.5 12.5 36 69-108 114-149 (318)
379 PRK13897 type IV secretion sys 92.2 0.17 3.6E-06 53.2 4.4 49 70-124 159-207 (606)
380 PRK14721 flhF flagellar biosyn 92.1 0.59 1.3E-05 46.7 8.0 67 68-137 190-256 (420)
381 PRK00771 signal recognition pa 92.1 0.73 1.6E-05 46.5 8.7 35 70-108 96-130 (437)
382 TIGR02524 dot_icm_DotB Dot/Icm 92.1 0.37 8E-06 47.4 6.5 27 68-95 133-159 (358)
383 PRK13851 type IV secretion sys 92.1 0.19 4.1E-06 49.0 4.4 42 68-114 161-202 (344)
384 PRK14965 DNA polymerase III su 92.0 0.69 1.5E-05 48.8 8.8 19 70-88 39-57 (576)
385 PRK09112 DNA polymerase III su 92.0 0.43 9.4E-06 46.8 6.8 23 71-94 47-69 (351)
386 COG1200 RecG RecG-like helicas 91.9 0.99 2.1E-05 47.1 9.4 88 322-409 300-390 (677)
387 PRK05563 DNA polymerase III su 91.9 0.62 1.3E-05 48.9 8.3 22 69-90 38-59 (559)
388 TIGR02640 gas_vesic_GvpN gas v 91.9 0.13 2.8E-06 48.4 3.0 37 52-88 4-40 (262)
389 COG0470 HolB ATPase involved i 91.9 1 2.2E-05 43.9 9.4 22 69-90 23-45 (325)
390 PRK00440 rfc replication facto 91.8 0.76 1.7E-05 44.6 8.4 18 70-87 39-56 (319)
391 PRK06731 flhF flagellar biosyn 91.7 2.4 5.2E-05 39.8 11.1 22 70-91 76-97 (270)
392 cd01128 rho_factor Transcripti 91.7 0.45 9.8E-06 44.1 6.2 21 65-85 12-32 (249)
393 COG1074 RecB ATP-dependent exo 91.6 0.32 7E-06 55.6 6.3 58 68-125 15-73 (1139)
394 TIGR03881 KaiC_arch_4 KaiC dom 91.6 0.55 1.2E-05 43.2 6.7 61 59-124 9-70 (229)
395 PRK05896 DNA polymerase III su 91.5 0.41 8.8E-06 49.9 6.2 20 70-89 39-58 (605)
396 COG0466 Lon ATP-dependent Lon 91.4 0.46 1E-05 49.7 6.4 48 178-229 402-449 (782)
397 PRK12727 flagellar biosynthesi 91.4 0.76 1.7E-05 47.1 7.9 63 68-135 349-413 (559)
398 PRK12724 flagellar biosynthesi 91.4 0.78 1.7E-05 45.6 7.8 57 70-132 224-282 (432)
399 PRK14701 reverse gyrase; Provi 91.4 0.73 1.6E-05 54.3 8.7 64 331-394 121-187 (1638)
400 cd00544 CobU Adenosylcobinamid 91.2 1.4 3.1E-05 38.1 8.5 45 72-123 2-46 (169)
401 TIGR03880 KaiC_arch_3 KaiC dom 91.2 0.68 1.5E-05 42.4 6.9 60 60-124 6-66 (224)
402 PRK14950 DNA polymerase III su 91.2 0.71 1.5E-05 48.9 7.9 20 70-89 39-58 (585)
403 CHL00095 clpC Clp protease ATP 91.1 0.25 5.5E-06 54.6 4.7 35 53-87 512-557 (821)
404 PRK09376 rho transcription ter 91.0 0.87 1.9E-05 44.8 7.6 43 52-96 153-195 (416)
405 TIGR00763 lon ATP-dependent pr 90.9 0.2 4.4E-06 54.9 3.6 19 68-86 346-364 (775)
406 PRK10436 hypothetical protein; 90.8 0.49 1.1E-05 48.1 6.0 48 42-95 196-243 (462)
407 PF01443 Viral_helicase1: Vira 90.8 0.14 3.1E-06 47.2 2.1 14 72-85 1-14 (234)
408 PF13481 AAA_25: AAA domain; P 90.7 0.46 1E-05 42.2 5.2 64 62-126 24-94 (193)
409 KOG0331 ATP-dependent RNA heli 90.7 1.6 3.4E-05 44.6 9.3 75 100-203 340-415 (519)
410 PRK14954 DNA polymerase III su 90.5 0.4 8.8E-06 50.6 5.3 21 70-90 39-59 (620)
411 KOG0739 AAA+-type ATPase [Post 90.4 0.83 1.8E-05 42.5 6.4 44 71-122 168-211 (439)
412 PF06309 Torsin: Torsin; Inte 90.4 2.1 4.5E-05 34.7 8.0 54 70-124 52-112 (127)
413 TIGR02525 plasmid_TraJ plasmid 90.3 0.67 1.5E-05 45.7 6.3 42 69-112 149-190 (372)
414 PRK08533 flagellar accessory p 90.3 0.73 1.6E-05 42.3 6.2 52 68-124 23-74 (230)
415 PRK14969 DNA polymerase III su 90.3 1.4 3E-05 46.0 8.9 21 70-90 39-59 (527)
416 TIGR01054 rgy reverse gyrase. 90.2 0.95 2.1E-05 51.8 8.2 64 331-394 120-187 (1171)
417 PRK04537 ATP-dependent RNA hel 90.2 2.4 5.2E-05 44.9 10.7 79 100-206 256-334 (572)
418 PHA02244 ATPase-like protein 90.2 0.2 4.3E-06 48.7 2.4 20 67-86 117-136 (383)
419 TIGR00631 uvrb excinuclease AB 90.1 2 4.3E-05 46.1 10.0 81 100-209 441-522 (655)
420 PRK08451 DNA polymerase III su 90.1 1.4 3.1E-05 45.5 8.7 19 70-88 37-55 (535)
421 PRK13900 type IV secretion sys 90.0 0.3 6.6E-06 47.4 3.6 41 68-113 159-199 (332)
422 PF10593 Z1: Z1 domain; Inter 90.0 1.2 2.5E-05 41.1 7.2 89 360-453 111-204 (239)
423 COG0467 RAD55 RecA-superfamily 90.0 0.75 1.6E-05 43.2 6.2 56 66-126 20-75 (260)
424 PRK13850 type IV secretion sys 89.9 0.36 7.8E-06 51.4 4.3 49 70-124 140-188 (670)
425 COG0552 FtsY Signal recognitio 89.8 2.1 4.5E-05 40.9 8.7 56 72-134 142-199 (340)
426 KOG1513 Nuclear helicase MOP-3 89.8 0.13 2.7E-06 53.8 0.8 63 378-440 850-921 (1300)
427 TIGR02655 circ_KaiC circadian 89.7 0.85 1.8E-05 47.1 6.8 63 59-125 10-73 (484)
428 PRK07133 DNA polymerase III su 89.7 1 2.3E-05 48.1 7.4 20 70-89 41-60 (725)
429 KOG0730 AAA+-type ATPase [Post 89.7 1.2 2.7E-05 46.1 7.6 19 68-86 467-485 (693)
430 TIGR02397 dnaX_nterm DNA polym 89.5 2.3 4.9E-05 42.0 9.6 19 70-88 37-55 (355)
431 PRK14948 DNA polymerase III su 89.5 1.1 2.5E-05 47.5 7.7 22 69-90 38-59 (620)
432 TIGR02533 type_II_gspE general 89.5 0.82 1.8E-05 47.0 6.5 46 42-94 220-266 (486)
433 TIGR03819 heli_sec_ATPase heli 89.5 0.94 2E-05 44.2 6.6 64 40-113 154-217 (340)
434 PRK11034 clpA ATP-dependent Cl 89.4 2.3 5E-05 46.3 10.0 20 69-88 207-226 (758)
435 KOG0333 U5 snRNP-like RNA heli 89.4 3.4 7.4E-05 41.7 10.1 73 101-202 517-590 (673)
436 PF01580 FtsK_SpoIIIE: FtsK/Sp 89.3 0.57 1.2E-05 42.2 4.7 42 69-110 38-79 (205)
437 KOG0344 ATP-dependent RNA heli 89.2 2.7 5.9E-05 42.9 9.5 101 78-207 366-466 (593)
438 COG1197 Mfd Transcription-repa 89.2 2.3 5E-05 47.4 9.7 79 331-409 642-722 (1139)
439 PF12846 AAA_10: AAA-like doma 89.2 0.69 1.5E-05 44.4 5.5 42 70-115 2-43 (304)
440 KOG2228 Origin recognition com 89.1 4.5 9.7E-05 38.7 10.2 44 182-226 123-166 (408)
441 PF01637 Arch_ATPase: Archaeal 89.1 2.5 5.4E-05 38.6 9.0 17 69-85 20-36 (234)
442 TIGR03600 phage_DnaB phage rep 89.1 3.7 8.1E-05 41.7 10.8 48 58-108 183-230 (421)
443 PRK14953 DNA polymerase III su 89.0 1.4 3E-05 45.4 7.7 19 71-89 40-58 (486)
444 PRK08760 replicative DNA helic 88.9 2.7 5.8E-05 43.2 9.6 61 60-124 220-280 (476)
445 PRK06647 DNA polymerase III su 88.8 0.51 1.1E-05 49.4 4.5 19 70-88 39-57 (563)
446 PF03237 Terminase_6: Terminas 88.8 3.2 7E-05 41.1 10.3 42 73-116 1-42 (384)
447 cd00268 DEADc DEAD-box helicas 88.8 3.4 7.5E-05 36.9 9.5 75 331-409 68-149 (203)
448 PRK12608 transcription termina 88.8 1.9 4.2E-05 42.2 8.0 42 53-96 118-159 (380)
449 PRK06305 DNA polymerase III su 88.7 0.99 2.1E-05 46.0 6.4 20 70-89 40-59 (451)
450 PRK04841 transcriptional regul 88.7 2.5 5.4E-05 47.8 10.3 30 197-226 121-150 (903)
451 KOG1513 Nuclear helicase MOP-3 88.7 0.64 1.4E-05 48.9 4.9 82 50-135 264-351 (1300)
452 KOG2004 Mitochondrial ATP-depe 88.7 0.45 9.8E-06 49.6 3.8 49 176-228 488-536 (906)
453 PHA00350 putative assembly pro 88.7 0.98 2.1E-05 44.7 6.0 25 72-96 4-29 (399)
454 TIGR02538 type_IV_pilB type IV 88.6 0.87 1.9E-05 47.9 6.1 47 42-94 294-340 (564)
455 PRK07004 replicative DNA helic 88.6 1.8 3.8E-05 44.4 8.1 46 60-108 204-249 (460)
456 COG4098 comFA Superfamily II D 88.5 3.2 7E-05 39.5 8.9 94 91-212 295-388 (441)
457 PF01078 Mg_chelatase: Magnesi 88.5 0.21 4.5E-06 44.4 1.2 19 68-86 21-39 (206)
458 TIGR02639 ClpA ATP-dependent C 88.5 2.7 5.8E-05 46.0 9.9 38 51-88 183-222 (731)
459 PF00437 T2SE: Type II/IV secr 88.5 0.41 9E-06 45.2 3.3 42 68-113 126-167 (270)
460 TIGR03345 VI_ClpV1 type VI sec 88.4 1.8 3.9E-05 48.0 8.5 17 71-87 598-614 (852)
461 TIGR02784 addA_alphas double-s 88.4 1.2 2.5E-05 51.5 7.4 57 69-126 10-66 (1141)
462 PRK07399 DNA polymerase III su 88.3 2.9 6.3E-05 40.4 9.0 19 70-88 27-45 (314)
463 PRK06904 replicative DNA helic 88.1 4.1 8.8E-05 41.9 10.3 61 59-123 211-271 (472)
464 PF13555 AAA_29: P-loop contai 88.1 0.45 9.7E-06 33.2 2.4 17 69-85 23-39 (62)
465 TIGR02655 circ_KaiC circadian 88.1 0.97 2.1E-05 46.7 5.9 63 57-124 250-313 (484)
466 PRK08506 replicative DNA helic 88.0 3.4 7.5E-05 42.5 9.8 61 58-123 181-241 (472)
467 PRK14971 DNA polymerase III su 88.0 1.2 2.6E-05 47.3 6.6 20 70-89 40-59 (614)
468 KOG0745 Putative ATP-dependent 87.9 0.4 8.7E-06 46.9 2.7 25 69-95 226-250 (564)
469 PRK11634 ATP-dependent RNA hel 87.9 2 4.4E-05 45.9 8.2 75 331-409 73-155 (629)
470 PRK14970 DNA polymerase III su 87.7 1.6 3.4E-05 43.5 7.0 19 70-88 40-58 (367)
471 TIGR02237 recomb_radB DNA repa 87.7 0.89 1.9E-05 41.0 4.8 40 67-110 10-49 (209)
472 cd01127 TrwB Bacterial conjuga 87.6 0.71 1.5E-05 46.6 4.5 45 68-116 41-85 (410)
473 PRK13822 conjugal transfer cou 87.6 0.64 1.4E-05 49.4 4.3 57 70-136 225-281 (641)
474 PRK09361 radB DNA repair and r 87.5 1.2 2.6E-05 40.8 5.6 47 59-109 12-59 (225)
475 COG2909 MalT ATP-dependent tra 87.5 1.4 3.1E-05 47.1 6.6 30 198-227 130-159 (894)
476 TIGR00416 sms DNA repair prote 87.3 2.8 6E-05 42.8 8.5 61 59-124 83-144 (454)
477 TIGR02238 recomb_DMC1 meiotic 87.3 2.1 4.5E-05 41.3 7.2 52 59-110 85-139 (313)
478 TIGR02788 VirB11 P-type DNA tr 87.2 0.71 1.5E-05 44.6 4.1 18 68-85 143-160 (308)
479 PRK11776 ATP-dependent RNA hel 87.2 6.3 0.00014 40.5 11.3 73 333-409 73-153 (460)
480 KOG2170 ATPase of the AAA+ sup 86.9 1.9 4.1E-05 40.4 6.3 24 72-96 113-136 (344)
481 PRK13876 conjugal transfer cou 86.9 0.54 1.2E-05 50.1 3.2 49 70-124 145-193 (663)
482 PRK08006 replicative DNA helic 86.8 5.7 0.00012 40.8 10.5 60 59-122 214-273 (471)
483 TIGR03743 SXT_TraD conjugative 86.7 1.5 3.3E-05 46.7 6.5 53 69-125 176-230 (634)
484 PF00270 DEAD: DEAD/DEAH box h 86.6 6.2 0.00013 33.8 9.5 75 331-409 43-125 (169)
485 PRK08058 DNA polymerase III su 86.5 2.7 5.9E-05 41.0 7.8 19 70-88 29-47 (329)
486 PHA00012 I assembly protein 86.5 1.2 2.6E-05 42.4 4.9 25 72-96 4-28 (361)
487 cd01131 PilT Pilus retraction 86.5 1 2.2E-05 40.3 4.4 38 72-112 4-41 (198)
488 PRK04837 ATP-dependent RNA hel 86.5 4.5 9.9E-05 41.1 9.7 76 101-204 255-330 (423)
489 PRK11192 ATP-dependent RNA hel 86.4 5 0.00011 40.9 10.0 75 101-203 245-319 (434)
490 PTZ00110 helicase; Provisional 86.4 4.7 0.0001 42.4 9.9 76 100-204 376-452 (545)
491 PF13191 AAA_16: AAA ATPase do 86.4 1.9 4.1E-05 37.8 6.2 28 69-97 24-51 (185)
492 PF01935 DUF87: Domain of unkn 86.4 1.1 2.4E-05 41.1 4.8 41 69-112 23-63 (229)
493 TIGR02767 TraG-Ti Ti-type conj 86.1 0.88 1.9E-05 48.1 4.3 49 70-124 212-260 (623)
494 PRK13531 regulatory ATPase Rav 86.1 0.52 1.1E-05 47.7 2.5 33 54-86 24-56 (498)
495 cd00079 HELICc Helicase superf 86.0 15 0.00032 29.7 11.1 79 100-207 27-106 (131)
496 PF10412 TrwB_AAD_bind: Type I 86.0 1.1 2.3E-05 44.9 4.7 46 69-118 15-60 (386)
497 PF04665 Pox_A32: Poxvirus A32 86.0 1 2.2E-05 41.3 4.2 36 70-109 14-49 (241)
498 COG0556 UvrB Helicase subunit 85.9 4.5 9.7E-05 41.1 8.7 80 100-208 445-525 (663)
499 CHL00095 clpC Clp protease ATP 85.9 2.8 6.1E-05 46.5 8.3 20 69-88 200-219 (821)
500 TIGR03346 chaperone_ClpB ATP-d 85.9 2.9 6.2E-05 46.6 8.4 19 69-87 194-212 (852)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-70 Score=498.42 Aligned_cols=387 Identities=34% Similarity=0.506 Sum_probs=347.5
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC
Q 009641 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (530)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~ 99 (530)
...+|.++ +++|.+++++++.||..|+++|++|++.+ +.|+|+|..|.||||||.+|++|++++|...+
T Consensus 59 ~~~sf~dL------gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p- 127 (476)
T KOG0330|consen 59 SFKSFADL------GVHPELLEACQELGWKKPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEP- 127 (476)
T ss_pred hhcchhhc------CcCHHHHHHHHHhCcCCCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-
Confidence 34456666 69999999999999999999999986655 46999999999999999999999999999854
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
+.+.++|++|||+||.|+.+.+..++...|+++.++.||.+...+...+. +.|+|+|+|
T Consensus 128 ~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~---------------------kkPhilVaT 186 (476)
T KOG0330|consen 128 KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLS---------------------KKPHILVAT 186 (476)
T ss_pred CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhh---------------------cCCCEEEeC
Confidence 56899999999999999999999999999999999999998877766544 567999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCC
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (530)
|++|++++.+.+.+++..++++|+||||+++++.|...+..|+..++..
T Consensus 187 PGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e------------------------------- 235 (476)
T KOG0330|consen 187 PGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE------------------------------- 235 (476)
T ss_pred cHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc-------------------------------
Confidence 9999999998899999999999999999999999999999999988743
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEc
Q 009641 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (530)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~ 339 (530)
.++++||||++..+.++....+..|..+...... .....+.+++.+.+...|..+|..+++...+..+||||
T Consensus 236 -------rqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~ 307 (476)
T KOG0330|consen 236 -------RQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFC 307 (476)
T ss_pred -------ceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEE
Confidence 2899999999999999999999999988876543 45566778888899999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHH
Q 009641 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (530)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y 419 (530)
++...++.++-.|...+ +.+..+||.|++..|.-.++.|++|..+||||||+++||+|+|.+++|||||+|.+..+|
T Consensus 308 ~t~~tt~~la~~L~~lg---~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDY 384 (476)
T KOG0330|consen 308 NTCNTTRFLALLLRNLG---FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDY 384 (476)
T ss_pred eccchHHHHHHHHHhcC---cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHH
Confidence 99999999999999776 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHHhhhHHHHHHHHh
Q 009641 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRG 481 (530)
Q Consensus 420 ~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (530)
+||+||+||+|+.|.++.+++..|.+.+.+|...+.+ ..+..+++.+..-.+.+++.++..
T Consensus 385 IHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gk-kl~~~~~~~~~~~~l~erv~eA~~ 445 (476)
T KOG0330|consen 385 IHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGK-KLPEYKVDKNEVMSLNERVAEAQK 445 (476)
T ss_pred HHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhc-CCCccCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999777753 455566777666666665555544
No 2
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-67 Score=493.56 Aligned_cols=422 Identities=33% Similarity=0.550 Sum_probs=355.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC--C
Q 009641 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--R 100 (530)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~--~ 100 (530)
+|..++ |+..+++++..+||..|+|+|..+|+-. +.|+|++.+|.||||||.+|++|++++|...+. .
T Consensus 182 sF~~mN------LSRPlLka~~~lGy~~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~ 251 (691)
T KOG0338|consen 182 SFQSMN------LSRPLLKACSTLGYKKPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVA 251 (691)
T ss_pred hHHhcc------cchHHHHHHHhcCCCCCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCc
Confidence 455663 9999999999999999999999986643 459999999999999999999999999987642 4
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
..+||||+|||+|+.|++...+.++.+.++.+++..||.+...+... +..+|||+|+||
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~---------------------LRs~PDIVIATP 310 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAV---------------------LRSRPDIVIATP 310 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHH---------------------HhhCCCEEEecc
Confidence 56899999999999999999999999999999999999998887544 557889999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (530)
++|.+|+++...|+++++.++|+||||+|++.+|.+.+..|+...+...
T Consensus 311 GRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~R------------------------------- 359 (691)
T KOG0338|consen 311 GRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNR------------------------------- 359 (691)
T ss_pred hhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccc-------------------------------
Confidence 9999999999999999999999999999999999999999999876433
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeec--cCCCcHHHHHHHHHhcCCCcEEEE
Q 009641 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC--ESKLKPLYLVALLQSLGEEKCIVF 338 (530)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~iVf 338 (530)
|+++||||++..+..++...+..|+.+.+.+.....+...+.|..+- ....+...+..++...-...+|||
T Consensus 360 -------QTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivF 432 (691)
T KOG0338|consen 360 -------QTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVF 432 (691)
T ss_pred -------cceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEE
Confidence 89999999999999999999999999988776544444444444332 345678888888888888999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhH
Q 009641 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (530)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~ 418 (530)
+.|.+.|+++.-.|--.| +++..+||.+++.+|.+.++.|++++++||||||+++||+||+++.+||||++|.+.+.
T Consensus 433 v~tKk~AHRl~IllGLlg---l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~ 509 (691)
T KOG0338|consen 433 VRTKKQAHRLRILLGLLG---LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEH 509 (691)
T ss_pred EehHHHHHHHHHHHHHhh---chhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHH
Confidence 999999999988887555 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHh--cCCCCCCcCCChhHHhhhHHHHH-------HHHhccchhh--
Q 009641 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA--DNDSCPIHSIPSSLIESLRPVYK-------SVRGGISDEA-- 487 (530)
Q Consensus 419 y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-- 487 (530)
|+||+||++|+|+.|.+++|+.++|.+.++.+.+.. .+.......+++..++.+...+. .++..-..|-
T Consensus 510 Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~ieemE~~iq~vl~eE~~ekel 589 (691)
T KOG0338|consen 510 YLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKKIEEMEDTIQAVLDEEREEKEL 589 (691)
T ss_pred HHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988874 33444456778877776654433 3332222221
Q ss_pred -----hhhhhcccc-----CCCcccchhhcccccccccc
Q 009641 488 -----FWKVGCDLH-----GVNRVRRSFYQTSGDRALGK 516 (530)
Q Consensus 488 -----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 516 (530)
-..++.+.. ..-+.+|.|||...++...|
T Consensus 590 ~~ae~ql~k~en~Le~g~ei~arprRtWFqte~~kk~~K 628 (691)
T KOG0338|consen 590 SKAEAQLEKGENMLEHGDEIYARPRRTWFQTEKDKKASK 628 (691)
T ss_pred HHHHhHHHHHHHHHhhccccccCccchhhhhhHHHHHHH
Confidence 111222222 13448899999888766543
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-67 Score=509.08 Aligned_cols=367 Identities=32% Similarity=0.504 Sum_probs=329.4
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc-----CCCcccEEEEc
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVL 108 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~-----~~~~~~~lil~ 108 (530)
+|+++...+|+..||..|+|+|.++|+.++ .|+|++..|.||||||++|++|++.++... ..+++.+|||+
T Consensus 97 ~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l----~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~ 172 (519)
T KOG0331|consen 97 GLSEELMKALKEQGFEKPTPIQAQGWPIAL----SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLA 172 (519)
T ss_pred cccHHHHHHHHhcCCCCCchhhhcccceec----cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEc
Confidence 499999999999999999999999977665 599999999999999999999999999862 33578999999
Q ss_pred CcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHh
Q 009641 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (530)
Q Consensus 109 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~ 188 (530)
|||+||.|+.+.+.+++..++++..+++|+.+...+... +.++.+|+|+||++|.+++.
T Consensus 173 PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~---------------------l~~gvdiviaTPGRl~d~le 231 (519)
T KOG0331|consen 173 PTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRD---------------------LERGVDVVIATPGRLIDLLE 231 (519)
T ss_pred CcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHH---------------------HhcCCcEEEeCChHHHHHHH
Confidence 999999999999999999999999999999998887654 55788999999999999999
Q ss_pred cCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCcee
Q 009641 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (530)
Q Consensus 189 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (530)
. +..+++.+.++|+||||+|++++|...++.|+..++.. ..|
T Consensus 232 ~-g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~-------------------------------------~rQ 273 (519)
T KOG0331|consen 232 E-GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRP-------------------------------------DRQ 273 (519)
T ss_pred c-CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCC-------------------------------------ccc
Confidence 8 67899999999999999999999999999999987542 227
Q ss_pred eEEEeEeecCChhhhhhhccCCceEEecCCc-cccCcccceeeEeeccCCCcHHHHHHHHHhc---CCCcEEEEcCChHH
Q 009641 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSL---GEEKCIVFTSSVES 344 (530)
Q Consensus 269 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~iVf~~s~~~ 344 (530)
++++|||++..+..++..++.+|..+.+... .......+.+....++...|...|..+|... .++++||||+|.+.
T Consensus 274 tlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~ 353 (519)
T KOG0331|consen 274 TLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRT 353 (519)
T ss_pred EEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhh
Confidence 9999999999999999999999999988755 5556677888888888888999888888765 46799999999999
Q ss_pred HHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHh
Q 009641 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424 (530)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~G 424 (530)
|+.++..|...+ +++..+||+.++.+|..+++.|++|+..||||||+++||+|+|+|++|||||+|.++++|+||+|
T Consensus 354 ~~~l~~~l~~~~---~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiG 430 (519)
T KOG0331|consen 354 CDELARNLRRKG---WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIG 430 (519)
T ss_pred HHHHHHHHHhcC---cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcC
Confidence 999999999765 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHH
Q 009641 425 RTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLI 469 (530)
Q Consensus 425 R~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (530)
|+||+|++|.+++|++..+......+.+-+.... ..+++.+.
T Consensus 431 RTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~---q~v~~~l~ 472 (519)
T KOG0331|consen 431 RTGRAGKKGTAITFFTSDNAKLARELIKVLREAG---QTVPPDLL 472 (519)
T ss_pred ccccCCCCceEEEEEeHHHHHHHHHHHHHHHHcc---CCCChHHH
Confidence 9999999999999999999887777766664333 45555544
No 4
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-64 Score=466.98 Aligned_cols=364 Identities=33% Similarity=0.513 Sum_probs=322.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC---
Q 009641 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--- 99 (530)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~--- 99 (530)
.|+++. +.|++++.+++..+||..+||+|..+++.++ .++|+++.|+||||||+||++|+++.+..+..
T Consensus 5 ~~~~l~----~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll----~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~ 76 (567)
T KOG0345|consen 5 SFSSLA----PPLSPWLLEALDESGFEKMTPVQAATIPLLL----KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP 76 (567)
T ss_pred chhhcC----CCccHHHHHHHHhcCCcccCHHHHhhhHHHh----cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC
Confidence 455554 3488999999999999999999999877655 58999999999999999999999999954322
Q ss_pred -CcccEEEEcCcHHHHHHHHHHHHHhccc-cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 009641 100 -RCLRALVVLPTRDLALQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (530)
Q Consensus 100 -~~~~~lil~Pt~~L~~Q~~~~l~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 177 (530)
....+|||+|||+|+.|+.+.+..|... .++++.+++||.+..++...+. ..+++|+|
T Consensus 77 ~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fk--------------------ee~~nIlV 136 (567)
T KOG0345|consen 77 PGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFK--------------------EEGPNILV 136 (567)
T ss_pred ccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHH--------------------HhCCcEEE
Confidence 2346999999999999999999999887 4889999999999888876544 36789999
Q ss_pred eCChHHHHHHhcC-CCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccc
Q 009641 178 ATPGRLMDHINAT-RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (530)
Q Consensus 178 ~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (530)
|||++|.+++.+. ..++++++.++|+||||+++++||...+..|++.+|...
T Consensus 137 gTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQR--------------------------- 189 (567)
T KOG0345|consen 137 GTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQR--------------------------- 189 (567)
T ss_pred eCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccc---------------------------
Confidence 9999999999873 345677999999999999999999999999999988643
Q ss_pred cCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCcc-ccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcE
Q 009641 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335 (530)
Q Consensus 257 ~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 335 (530)
++=+||||.+..+..+...++++|+.+.+.... ...|..+..++..|.+..|...+.+++......++
T Consensus 190 -----------RTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~ 258 (567)
T KOG0345|consen 190 -----------RTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKC 258 (567)
T ss_pred -----------ccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccE
Confidence 567899999999999999999999999877654 34778899999999999999999999999999999
Q ss_pred EEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCC
Q 009641 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415 (530)
Q Consensus 336 iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s 415 (530)
|||++|+..+++....+... ..+..+..+||.|.+..|..+++.|++....+|+|||+++||+|||++++||+||+|.+
T Consensus 259 iVFF~TCasVeYf~~~~~~~-l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~ 337 (567)
T KOG0345|consen 259 IVFFPTCASVEYFGKLFSRL-LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKD 337 (567)
T ss_pred EEEecCcchHHHHHHHHHHH-hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCC
Confidence 99999999999999999876 23478899999999999999999999988999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHh
Q 009641 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (530)
Q Consensus 416 ~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~ 454 (530)
+..|+||+||+||.|+.|.+++|+.+.+. .|-.+++.-
T Consensus 338 ~~~FvHR~GRTaR~gr~G~Aivfl~p~E~-aYveFl~i~ 375 (567)
T KOG0345|consen 338 PSSFVHRCGRTARAGREGNAIVFLNPREE-AYVEFLRIK 375 (567)
T ss_pred hhHHHhhcchhhhccCccceEEEecccHH-HHHHHHHhc
Confidence 99999999999999999999999999664 455555543
No 5
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-64 Score=470.34 Aligned_cols=454 Identities=43% Similarity=0.660 Sum_probs=380.9
Q ss_pred CCccC-CCCCCcccCCCCCCCCCCCCCCCHH----------HHHHHHHCCCCccchhhHHHHHHhcC-----CCCCCCcE
Q 009641 9 MPVLP-WMRSPVDVSLFEDCPLDHLPCLDPR----------LKVALQNMGISSLFPVQVAVWQETIG-----PGLFERDL 72 (530)
Q Consensus 9 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~----------i~~~l~~~g~~~~~~~Q~~a~~~~~~-----~~~~~~~~ 72 (530)
--.+| |+..|..+.+-+...+..+. ++.. +..++.++++...+|+|..+++.++. +...++|+
T Consensus 108 q~~lp~wva~p~t~~~nslq~~s~l~-~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDI 186 (620)
T KOG0350|consen 108 QVELPGWVAIPETAQNNSLQIFSVLG-KSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDI 186 (620)
T ss_pred cccCcccccCceecCCCceeeeeccc-hhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCce
Confidence 33455 99999998875555444442 3333 44558899999999999999988753 33347899
Q ss_pred EEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcC
Q 009641 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (530)
Q Consensus 73 li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 152 (530)
+|.||||||||++|.+|+++.+.+...+..++|||+||++|+.|+++.+.+++...|+.|....|..+..++...+...+
T Consensus 187 cV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~ 266 (620)
T KOG0350|consen 187 CVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDP 266 (620)
T ss_pred EEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCC
Confidence 99999999999999999999999987888999999999999999999999999999999999999999999988766433
Q ss_pred ccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccC----
Q 009641 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD---- 228 (530)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~---- 228 (530)
. ....||+|+||+||++|+.+.+.+++.+++++||||||+|++..|.+|+..++.++...
T Consensus 267 ~----------------~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~ 330 (620)
T KOG0350|consen 267 P----------------ECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVA 330 (620)
T ss_pred C----------------ccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhc
Confidence 1 12459999999999999999899999999999999999999999999999999887654
Q ss_pred -cccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecC---CccccCc
Q 009641 229 -NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLP 304 (530)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 304 (530)
..+.+.......+..+...-.. ....++....+++|||+..+...+..+.++.|....+. ...+.++
T Consensus 331 ~~~nii~~~~~~~pt~~~e~~t~---------~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp 401 (620)
T KOG0350|consen 331 CLDNIIRQRQAPQPTVLSELLTK---------LGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLP 401 (620)
T ss_pred ChhhhhhhcccCCchhhHHHHhh---------cCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecC
Confidence 2222222222222222221111 13345666789999999999999999999999665544 3677889
Q ss_pred ccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHH-hcCCCcceEEEccccCCHHHHHHHHHHHhc
Q 009641 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (530)
Q Consensus 305 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~-~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 383 (530)
..+.++...+....|...++.++......++|+|+++.+.+.+++..|. .++..++++..+.|+++.+.|.+.++.|.+
T Consensus 402 ~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~ 481 (620)
T KOG0350|consen 402 SSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK 481 (620)
T ss_pred hhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998 666777889999999999999999999999
Q ss_pred CCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcC-CCCCCc
Q 009641 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIH 462 (530)
Q Consensus 384 g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~ 462 (530)
|+++||||+|+++||||+-+++.||+||+|.+..+|+||+||++|+|+.|.+++++...+...|.+++++... ...+..
T Consensus 482 g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~ 561 (620)
T KOG0350|consen 482 GDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQ 561 (620)
T ss_pred CCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcccCCccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998865 455555
Q ss_pred CCChhHHhhhHHHHHHHHhccchhhh
Q 009641 463 SIPSSLIESLRPVYKSVRGGISDEAF 488 (530)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (530)
.++...+......|..++++++.+-+
T Consensus 562 ~~e~~~~~~~~~~Yt~ALEsLk~e~~ 587 (620)
T KOG0350|consen 562 PIEYIFIKDEDDRYTKALESLKAEVV 587 (620)
T ss_pred ecCchHHHHHHHHHHHHHHHHHHHHh
Confidence 66555554444588889988886644
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-63 Score=504.11 Aligned_cols=362 Identities=31% Similarity=0.526 Sum_probs=324.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc-CCC
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVR 100 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~-~~~ 100 (530)
..|+++ +|++.+++++.++||..|+|+|..+++.++. |+|+++.|+||||||++|++|+++.+... ...
T Consensus 29 ~~F~~l------~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~ 98 (513)
T COG0513 29 PEFASL------GLSPELLQALKDLGFEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERK 98 (513)
T ss_pred CCHhhc------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccC
Confidence 357777 4999999999999999999999999887764 89999999999999999999999997742 212
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
...+||++|||+||.|+++.+..++... ++++..++||.+...+... +..+++|+|+|
T Consensus 99 ~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---------------------l~~~~~ivVaT 157 (513)
T COG0513 99 YVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---------------------LKRGVDIVVAT 157 (513)
T ss_pred CCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---------------------HhcCCCEEEEC
Confidence 2229999999999999999999999998 7999999999998887643 33468999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCC
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (530)
|+|+++++.+ +.++++.+.++|+||||+|++++|.+.+..|+..++.
T Consensus 158 PGRllD~i~~-~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~-------------------------------- 204 (513)
T COG0513 158 PGRLLDLIKR-GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP-------------------------------- 204 (513)
T ss_pred ccHHHHHHHc-CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc--------------------------------
Confidence 9999999998 4789999999999999999999999999999998764
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCcc-ccCcccceeeEeeccCCC-cHHHHHHHHHhcCCCcEEE
Q 009641 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIV 337 (530)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~iV 337 (530)
..|+++||||++..+..+...++.+|..+...... ......+.+++..+.... |...|..++......++||
T Consensus 205 ------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IV 278 (513)
T COG0513 205 ------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIV 278 (513)
T ss_pred ------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 22899999999999999999999999888776332 235677888888888765 9999999999888889999
Q ss_pred EcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChh
Q 009641 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (530)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~ 417 (530)
||+|...++.++..|...+ +++..+||+|++.+|.++++.|++|+.+||||||+++||||+|++++|||||+|.+++
T Consensus 279 F~~tk~~~~~l~~~l~~~g---~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e 355 (513)
T COG0513 279 FVRTKRLVEELAESLRKRG---FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPE 355 (513)
T ss_pred EeCcHHHHHHHHHHHHHCC---CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHH
Confidence 9999999999999999887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCccEEEEeecc-hHHHHHHHHHHhcC
Q 009641 418 TYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKADN 456 (530)
Q Consensus 418 ~y~Qr~GR~gR~g~~g~~i~~~~~~-~~~~~~~~~~~~~~ 456 (530)
.|+||+||+||+|+.|.+++|+.+. |...+..+.+....
T Consensus 356 ~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~ 395 (513)
T COG0513 356 DYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLER 395 (513)
T ss_pred HheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999986 88888888777643
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.5e-63 Score=465.40 Aligned_cols=364 Identities=32% Similarity=0.481 Sum_probs=322.2
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC---CCcccEEEEcCc
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPT 110 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~---~~~~~~lil~Pt 110 (530)
.|++.+.+++++|||.++|++|... +++++.|+|+++.|.||||||+||++|+++.+.+.+ ..+..+||++||
T Consensus 88 ~LS~~t~kAi~~~GF~~MT~VQ~~t----i~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PT 163 (543)
T KOG0342|consen 88 SLSPLTLKAIKEMGFETMTPVQQKT----IPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPT 163 (543)
T ss_pred ccCHHHHHHHHhcCccchhHHHHhh----cCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEeccc
Confidence 4999999999999999999999996 666777999999999999999999999999998753 356789999999
Q ss_pred HHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhc
Q 009641 111 RDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (530)
Q Consensus 111 ~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~ 189 (530)
|+||.|++.+++++.... ++.+..+.||++...+.+. +..+++|+|+||++|.+++++
T Consensus 164 RELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~k---------------------l~k~~niliATPGRLlDHlqN 222 (543)
T KOG0342|consen 164 RELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADK---------------------LVKGCNILIATPGRLLDHLQN 222 (543)
T ss_pred HHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHH---------------------hhccccEEEeCCchHHhHhhc
Confidence 999999999999999998 8999999999987766543 446889999999999999999
Q ss_pred CCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceee
Q 009641 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (530)
Q Consensus 190 ~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (530)
...+-..+++++|+||||++++.+|.+.+++|+..++... |.
T Consensus 223 t~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~r--------------------------------------qt 264 (543)
T KOG0342|consen 223 TSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQR--------------------------------------QT 264 (543)
T ss_pred CCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccc--------------------------------------ee
Confidence 8888888899999999999999999999999999987432 89
Q ss_pred EEEeEeecCChhhhhhhccCC-ceEEecCC-ccccCcccceeeEeeccCCCcHHHHHHHHHhcCC-CcEEEEcCChHHHH
Q 009641 270 MVLSATLTQDPNKLAQLDLHH-PLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTH 346 (530)
Q Consensus 270 i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~iVf~~s~~~~~ 346 (530)
++||||.+..++.++...+.. ++.+.... ........+.+.+.+++...++..+..++++... .++||||+|...+.
T Consensus 265 ~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk 344 (543)
T KOG0342|consen 265 LLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVK 344 (543)
T ss_pred eEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHH
Confidence 999999999999999887664 77776543 3456677888988889888889999999987655 89999999999999
Q ss_pred HHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhh
Q 009641 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (530)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~ 426 (530)
.+++.|.... ++|..+||+.++..|..+..+|++.+..||||||+++||+|+|+|++||+||+|.++++|+||+||+
T Consensus 345 ~~~~lL~~~d---lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 345 FHAELLNYID---LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRT 421 (543)
T ss_pred HHHHHHhhcC---CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccc
Confidence 9999999654 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChh
Q 009641 427 ARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS 467 (530)
Q Consensus 427 gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (530)
||.|..|.+++++.|+|...++.+ +++ .....++++.
T Consensus 422 aR~gk~G~alL~l~p~El~Flr~L-K~l---pl~~~e~~~~ 458 (543)
T KOG0342|consen 422 AREGKEGKALLLLAPWELGFLRYL-KKL---PLEEFEFPPL 458 (543)
T ss_pred cccCCCceEEEEeChhHHHHHHHH-hhC---CCcccCCCCC
Confidence 999999999999999998766654 443 3333444443
No 8
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-63 Score=468.28 Aligned_cols=364 Identities=30% Similarity=0.446 Sum_probs=332.0
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc--
Q 009641 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-- 97 (530)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~-- 97 (530)
....|+++| |+..+.+.|++.+|..|+++|+++| +..+.|+|++-.|.||||||+||++|++++|...
T Consensus 67 ~~~kF~dlp------ls~~t~kgLke~~fv~~teiQ~~~I----p~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW 136 (758)
T KOG0343|consen 67 TIKKFADLP------LSQKTLKGLKEAKFVKMTEIQRDTI----PMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW 136 (758)
T ss_pred hhhhHHhCC------CchHHHHhHhhcCCccHHHHHHhhc----chhccCcccccccccCCCceeeehHHHHHHHHHcCC
Confidence 344577776 9999999999999999999999975 4456799999999999999999999999999875
Q ss_pred -CCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEE
Q 009641 98 -AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (530)
Q Consensus 98 -~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 176 (530)
+..|..+|||+|||+||.|+++.+.+.+++.+++.+++.||.....+...+ ...+|+
T Consensus 137 s~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi----------------------~~mNIL 194 (758)
T KOG0343|consen 137 SPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI----------------------SQMNIL 194 (758)
T ss_pred CCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh----------------------hcCCeE
Confidence 346888999999999999999999999999999999999999877664432 456999
Q ss_pred EeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccc
Q 009641 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (530)
Q Consensus 177 i~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (530)
||||++|++|+.....++.+++.++|+||||+|+++||...+..|++.++...
T Consensus 195 VCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~R--------------------------- 247 (758)
T KOG0343|consen 195 VCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKR--------------------------- 247 (758)
T ss_pred EechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhh---------------------------
Confidence 99999999999988888999999999999999999999999999999987533
Q ss_pred cCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCC-ccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcE
Q 009641 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335 (530)
Q Consensus 257 ~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 335 (530)
|+++||||.+..+..++++.+.+|.++.+.. .....|..++++++.++...|+..|..+++.+...++
T Consensus 248 -----------QTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~ 316 (758)
T KOG0343|consen 248 -----------QTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKS 316 (758)
T ss_pred -----------eeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccce
Confidence 8999999999999999999999999998773 4478899999999999999999999999999999999
Q ss_pred EEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCC
Q 009641 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415 (530)
Q Consensus 336 iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s 415 (530)
|||++|++++..+++.+.+. ..+.++..+||.|++..|..+..+|-.....||+|||+++||+|+|.|++||++|+|.+
T Consensus 317 iVF~SscKqvkf~~e~F~rl-rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPed 395 (758)
T KOG0343|consen 317 IVFLSSCKQVKFLYEAFCRL-RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPED 395 (758)
T ss_pred EEEEehhhHHHHHHHHHHhc-CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchh
Confidence 99999999999999999876 45689999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHh
Q 009641 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (530)
Q Consensus 416 ~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~ 454 (530)
+.+|+||+||++|.+..|.+++++.|.+.+.+...+++.
T Consensus 396 v~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 396 VDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred HHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 999999999999999999999999999966665555554
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-62 Score=442.57 Aligned_cols=366 Identities=29% Similarity=0.440 Sum_probs=325.5
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC
Q 009641 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (530)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~ 98 (530)
..++.|+.+ ||++++.+.|+.+|+.+|||+|..|++.|++ |+|+|-+|.||||||.+|.+|++++|...+
T Consensus 4 ~t~~~F~~L------Gl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP 73 (442)
T KOG0340|consen 4 KTAKPFSIL------GLSPWLVEQLKALGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDP 73 (442)
T ss_pred cccCchhhc------CccHHHHHHHHHhcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCC
Confidence 345678888 6999999999999999999999999888875 999999999999999999999999999875
Q ss_pred CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 009641 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (530)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (530)
.+..++|++|||+|+-|+.+.+..+++..++++.+++|+++.-.+. ..+..+|+++|+
T Consensus 74 -~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa---------------------~~L~~rPHvVva 131 (442)
T KOG0340|consen 74 -YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQA---------------------AILSDRPHVVVA 131 (442)
T ss_pred -CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhh---------------------hhcccCCCeEec
Confidence 6778999999999999999999999999999999999999765554 345678899999
Q ss_pred CChHHHHHHhcCC---CCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhcccc
Q 009641 179 TPGRLMDHINATR---GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (530)
Q Consensus 179 Tp~~l~~~l~~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (530)
||+++..++.... .+.+.++.++|+||||++++..|.+.++.+.+.++..
T Consensus 132 tPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~--------------------------- 184 (442)
T KOG0340|consen 132 TPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKP--------------------------- 184 (442)
T ss_pred CccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCc---------------------------
Confidence 9999999998752 2457889999999999999999999999998887653
Q ss_pred ccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEec-CCccccCcccceeeEeeccCCCcHHHHHHHHHhc---C
Q 009641 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQSL---G 331 (530)
Q Consensus 256 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~ 331 (530)
.|.++||||.++....+.......+..+.. .....+.++.+.+.++.++...|..+++.+++.. .
T Consensus 185 -----------RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~ 253 (442)
T KOG0340|consen 185 -----------RQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKE 253 (442)
T ss_pred -----------cceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhcc
Confidence 289999999999888877766555322222 2244567788899999999999999999999754 3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEcc
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~ 411 (530)
.+.++||+++..+|+.++..|.... +.+..+||.|++.+|...+.+|+++..+||||||+++||+|||.|++|||||
T Consensus 254 ~~simIFvnttr~cQ~l~~~l~~le---~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~d 330 (442)
T KOG0340|consen 254 NGSIMIFVNTTRECQLLSMTLKNLE---VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHD 330 (442)
T ss_pred CceEEEEeehhHHHHHHHHHHhhhc---eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecC
Confidence 5789999999999999999999765 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcCC
Q 009641 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457 (530)
Q Consensus 412 ~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 457 (530)
.|.++.+|+||+||++|+|+.|.++.|+++.|.+.+..+.+..+..
T Consensus 331 iPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 331 IPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998887643
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.9e-62 Score=461.57 Aligned_cols=389 Identities=27% Similarity=0.420 Sum_probs=332.4
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
-|.++.+|++.+ ++.++++.+...||..|+|+|+.|++ ..++.+|+|..|.||||||++|++|++.++..
T Consensus 240 lpnplrnwEE~~------~P~e~l~~I~~~~y~eptpIqR~aip----l~lQ~rD~igvaETgsGktaaf~ipLl~~Iss 309 (673)
T KOG0333|consen 240 LPNPLRNWEESG------FPLELLSVIKKPGYKEPTPIQRQAIP----LGLQNRDPIGVAETGSGKTAAFLIPLLIWISS 309 (673)
T ss_pred CCccccChhhcC------CCHHHHHHHHhcCCCCCchHHHhhcc----chhccCCeeeEEeccCCccccchhhHHHHHHc
Confidence 377888899995 99999999999999999999999855 45578999999999999999999999988865
Q ss_pred cC--------CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHh
Q 009641 97 RA--------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168 (530)
Q Consensus 97 ~~--------~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (530)
.+ ..++.++|++|||+|+.|+.++-.+|+..+++++..+.|+.+..++- ..
T Consensus 310 lP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~---------------------fq 368 (673)
T KOG0333|consen 310 LPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG---------------------FQ 368 (673)
T ss_pred CCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh---------------------hh
Confidence 42 35789999999999999999999999999999999999999887763 23
Q ss_pred hcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchh
Q 009641 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248 (530)
Q Consensus 169 ~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (530)
+..+++|+|+||++|.+.+.+ ..+.++...+||+||||+|.+++|...+..++..++......-.+...-...
T Consensus 369 ls~gceiviatPgrLid~Len-r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~------ 441 (673)
T KOG0333|consen 369 LSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEER------ 441 (673)
T ss_pred hhccceeeecCchHHHHHHHH-HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHH------
Confidence 457899999999999999998 5677889999999999999999999999999999886543211111000000
Q ss_pred hhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH
Q 009641 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328 (530)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 328 (530)
....+.... .-.|+++||||+++.+..++..++.+|+.+..+....+. ..+++.......+.|...|..+++
T Consensus 442 ------~~~~~~~~k-~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~-~rveQ~v~m~~ed~k~kkL~eil~ 513 (673)
T KOG0333|consen 442 ------VRKNFSSSK-KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPT-PRVEQKVEMVSEDEKRKKLIEILE 513 (673)
T ss_pred ------HHhhccccc-ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCc-cchheEEEEecchHHHHHHHHHHH
Confidence 000011111 224899999999999999999999999999887765444 345566666667777999999999
Q ss_pred hcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEE
Q 009641 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (530)
Q Consensus 329 ~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI 408 (530)
.....++|||+|+.+.|+.+++.|.+.+ +++..+||+-++++|+.+++.|++|..+||||||+++||||||+|++||
T Consensus 514 ~~~~ppiIIFvN~kk~~d~lAk~LeK~g---~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVi 590 (673)
T KOG0333|consen 514 SNFDPPIIIFVNTKKGADALAKILEKAG---YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVI 590 (673)
T ss_pred hCCCCCEEEEEechhhHHHHHHHHhhcc---ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceee
Confidence 9889999999999999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred EccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHh
Q 009641 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (530)
Q Consensus 409 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~ 454 (530)
|||++++.++|.||+||+||+|+.|.+++|+++.|...|.++.+.+
T Consensus 591 nydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 591 NYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred ecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999977666665544
No 11
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-62 Score=427.37 Aligned_cols=363 Identities=24% Similarity=0.424 Sum_probs=326.1
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc
Q 009641 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (530)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~ 97 (530)
.....+|+++ +|..++++.+...||++|..+|+.|++.++ +|+|++++|..|+|||.+|.+.+++.+.-+
T Consensus 23 ~~v~~~F~~M------gl~edlLrgiY~yGfekPS~IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~ 92 (400)
T KOG0328|consen 23 VKVIPTFDDM------GLKEDLLRGIYAYGFEKPSAIQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDIS 92 (400)
T ss_pred cccccchhhc------CchHHHHHHHHHhccCCchHHHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeecccc
Confidence 3445678888 599999999999999999999999976665 599999999999999999999888887664
Q ss_pred CCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 009641 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (530)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 177 (530)
. +..+++|++|||+|+.|+.+.+..++..+++.+....||.+..++.+. +..+.+++.
T Consensus 93 ~-r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikk---------------------ld~G~hvVs 150 (400)
T KOG0328|consen 93 V-RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKK---------------------LDYGQHVVS 150 (400)
T ss_pred c-ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhh---------------------hcccceEee
Confidence 3 556899999999999999999999999999999999999998777543 336779999
Q ss_pred eCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhcccccc
Q 009641 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (530)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (530)
+||+++++++++ +.+.-+.++++|+||||.|++.+|.+.+-.++..++.
T Consensus 151 GtPGrv~dmikr-~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~------------------------------ 199 (400)
T KOG0328|consen 151 GTPGRVLDMIKR-RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPP------------------------------ 199 (400)
T ss_pred CCCchHHHHHHh-ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCC------------------------------
Confidence 999999999998 5677788999999999999999999999999988763
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCC-CcHHHHHHHHHhcCCCcEE
Q 009641 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKPLYLVALLQSLGEEKCI 336 (530)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~i 336 (530)
..|.+++|||++.++.+....++.+|+.+-.......+ ..+.+|++..+.+ .|+..|..+.....-.+++
T Consensus 200 --------~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltl-EgIKqf~v~ve~EewKfdtLcdLYd~LtItQav 270 (400)
T KOG0328|consen 200 --------GAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTL-EGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAV 270 (400)
T ss_pred --------CceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCch-hhhhhheeeechhhhhHhHHHHHhhhhehheEE
Confidence 34899999999999999999999999988766554433 4466777666554 5999999999988889999
Q ss_pred EEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCCh
Q 009641 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416 (530)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~ 416 (530)
|||+|+..++.+.+.+.+.. +.|..+||+|++++|.+++++|++|+.+|||+||+.+||+|+|.+++|||||+|.+.
T Consensus 271 IFcnTk~kVdwLtekm~~~n---ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nr 347 (400)
T KOG0328|consen 271 IFCNTKRKVDWLTEKMREAN---FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNR 347 (400)
T ss_pred EEecccchhhHHHHHHHhhC---ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccH
Confidence 99999999999999998765 899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 417 ~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
+.|+||+||.||+|++|.++.|+..+|...++++.+.+.
T Consensus 348 e~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ys 386 (400)
T KOG0328|consen 348 ELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYS 386 (400)
T ss_pred HHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988774
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4e-61 Score=494.13 Aligned_cols=378 Identities=28% Similarity=0.444 Sum_probs=321.5
Q ss_pred CCCcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhh
Q 009641 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (530)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~ 95 (530)
..|.++.+|++++ +++.+.++|.++||.+|+|+|.+||+.++ .|+|+++.||||||||++|++|++..+.
T Consensus 124 ~~p~p~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i~ 193 (545)
T PTZ00110 124 NVPKPVVSFEYTS------FPDYILKSLKNAGFTEPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHIN 193 (545)
T ss_pred CCCcccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHHH
Confidence 4466677888874 99999999999999999999999998876 4899999999999999999999998876
Q ss_pred hcC----CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 009641 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (530)
Q Consensus 96 ~~~----~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (530)
... ..++.+|||+||++||.|+.+.+++++...++++.+.+|+.....+... +..
T Consensus 194 ~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~---------------------l~~ 252 (545)
T PTZ00110 194 AQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA---------------------LRR 252 (545)
T ss_pred hcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH---------------------HHc
Confidence 532 2467899999999999999999999998888999999999876655432 346
Q ss_pred CCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhh
Q 009641 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (530)
Q Consensus 172 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (530)
+++|+|+||++|.+++.+ ....++++++|||||||+|++++|...+..++..++.
T Consensus 253 ~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~------------------------ 307 (545)
T PTZ00110 253 GVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP------------------------ 307 (545)
T ss_pred CCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCC------------------------
Confidence 789999999999999987 4567889999999999999999999988888876542
Q ss_pred ccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccC-CceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhc
Q 009641 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330 (530)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 330 (530)
..|++++|||++..+..+....+. .++.+..+.........+.+.........|...|..++...
T Consensus 308 --------------~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~ 373 (545)
T PTZ00110 308 --------------DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRI 373 (545)
T ss_pred --------------CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHh
Confidence 238999999999888887776664 56666555433333445566666666777888888888754
Q ss_pred --CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEE
Q 009641 331 --GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (530)
Q Consensus 331 --~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI 408 (530)
...++||||++++.|+.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||
T Consensus 374 ~~~~~k~LIF~~t~~~a~~l~~~L~~~g---~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI 450 (545)
T PTZ00110 374 MRDGDKILIFVETKKGADFLTKELRLDG---WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVI 450 (545)
T ss_pred cccCCeEEEEecChHHHHHHHHHHHHcC---CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEE
Confidence 56799999999999999999998765 7889999999999999999999999999999999999999999999999
Q ss_pred EccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHH
Q 009641 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLI 469 (530)
Q Consensus 409 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (530)
+||+|.+..+|+||+||+||.|+.|.+++|+++++......+.+.+.... ..+|+.+.
T Consensus 451 ~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~---q~vp~~l~ 508 (545)
T PTZ00110 451 NFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK---QPVPPELE 508 (545)
T ss_pred EeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHcc---CCCCHHHH
Confidence 99999999999999999999999999999999999888887777765443 56666554
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.7e-61 Score=483.20 Aligned_cols=363 Identities=27% Similarity=0.423 Sum_probs=311.0
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC--
Q 009641 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-- 98 (530)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~-- 98 (530)
...|+++ +|++.+.++|..+||..|+|+|.+||+.++ .|+|++++||||||||++|++|+++.+....
T Consensus 7 ~~~f~~~------~l~~~l~~~l~~~g~~~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~ 76 (423)
T PRK04837 7 EQKFSDF------ALHPQVVEALEKKGFHNCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP 76 (423)
T ss_pred CCCHhhC------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccc
Confidence 3456666 499999999999999999999999988776 4899999999999999999999999886532
Q ss_pred ----CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCc
Q 009641 99 ----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (530)
Q Consensus 99 ----~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (530)
..++++|||+||++||.|+++.+..++...++++..++|+.....+.. .+..+++
T Consensus 77 ~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---------------------~l~~~~~ 135 (423)
T PRK04837 77 EDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---------------------VLESGVD 135 (423)
T ss_pred cccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhcCCCC
Confidence 235689999999999999999999999988999999999887665533 2345689
Q ss_pred EEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccc
Q 009641 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254 (530)
Q Consensus 175 Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (530)
|+|+||++|.+++.+ ..+.++++++||+||||++++.+|...+..++..++...
T Consensus 136 IlV~TP~~l~~~l~~-~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~------------------------- 189 (423)
T PRK04837 136 ILIGTTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN------------------------- 189 (423)
T ss_pred EEEECHHHHHHHHHc-CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc-------------------------
Confidence 999999999999986 567889999999999999999999988888887665321
Q ss_pred cccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCc
Q 009641 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334 (530)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 334 (530)
..+.+++|||++..+..+....+.+|..+....... ....+.+.........|...+..++......+
T Consensus 190 -----------~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 257 (423)
T PRK04837 190 -----------QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK-TGHRIKEELFYPSNEEKMRLLQTLIEEEWPDR 257 (423)
T ss_pred -----------ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc-CCCceeEEEEeCCHHHHHHHHHHHHHhcCCCe
Confidence 125789999999888888777788887776544322 22344455555556677888888888777889
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC
Q 009641 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414 (530)
Q Consensus 335 ~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~ 414 (530)
+||||+++..|+.+++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.
T Consensus 258 ~lVF~~t~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~ 334 (423)
T PRK04837 258 AIIFANTKHRCEEIWGHLAADG---HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPD 334 (423)
T ss_pred EEEEECCHHHHHHHHHHHHhCC---CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCC
Confidence 9999999999999999998765 8999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 415 s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
+..+|+||+||+||.|+.|.+++|+.++|...+..+.+.+.
T Consensus 335 s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~ 375 (423)
T PRK04837 335 DCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 375 (423)
T ss_pred chhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999888888765554
No 14
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-62 Score=461.69 Aligned_cols=396 Identities=31% Similarity=0.445 Sum_probs=327.8
Q ss_pred CCCcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCC-CcEEEECCCCchHHHHHHHHHHHHh
Q 009641 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~~~~l~~l 94 (530)
..+.+++.|..++ |+++++++|.++||.+|+++|..+++.++ .| .|++-.|.||||||+||.+|+++.+
T Consensus 175 ~~~~DvsAW~~l~------lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai----~gk~DIlGaAeTGSGKTLAFGIPiv~~l 244 (731)
T KOG0347|consen 175 SSKVDVSAWKNLF------LPMEILRALSNLGFSRPTEIQSLVLPAAI----RGKVDILGAAETGSGKTLAFGIPIVERL 244 (731)
T ss_pred ccccChHHHhcCC------CCHHHHHHHHhcCCCCCccchhhcccHhh----ccchhcccccccCCCceeeecchhhhhh
Confidence 4567777888884 99999999999999999999999866655 46 7999999999999999999999966
Q ss_pred hhcC----------CCccc--EEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCc
Q 009641 95 SNRA----------VRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162 (530)
Q Consensus 95 ~~~~----------~~~~~--~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (530)
...+ .++++ +||++|||+||.|+.+.+..++...++++..++||....++.+
T Consensus 245 ~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqR---------------- 308 (731)
T KOG0347|consen 245 LESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQR---------------- 308 (731)
T ss_pred hhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHH----------------
Confidence 5421 13344 9999999999999999999999999999999999999888754
Q ss_pred hhHHHhhcCCCcEEEeCChHHHHHHhcCCC--CCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccc
Q 009641 163 EDVLQELQSAVDILVATPGRLMDHINATRG--FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240 (530)
Q Consensus 163 ~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 240 (530)
.+.+.|+|+|+||+||+.++..... -++..++++|+||||+|+..|+.+.+..++..+.....
T Consensus 309 -----lL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~---------- 373 (731)
T KOG0347|consen 309 -----LLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQK---------- 373 (731)
T ss_pred -----HHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhc----------
Confidence 3456789999999999999987443 26788999999999999999999999999998763211
Q ss_pred cccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhh---------------------hhh-hc-cCCceEEecC
Q 009641 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK---------------------LAQ-LD-LHHPLFLTTG 297 (530)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~---------------------~~~-~~-~~~~~~~~~~ 297 (530)
.+..|+++||||++-.... +.. .. ...|.++...
T Consensus 374 -----------------------~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t 430 (731)
T KOG0347|consen 374 -----------------------NRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLT 430 (731)
T ss_pred -----------------------ccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecC
Confidence 1344899999998743211 111 11 2234555544
Q ss_pred CccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHH
Q 009641 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (530)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~ 377 (530)
... .....+....+.|+..+|..+|+.++..+ ++++|||||+++.+.+++-+|...+ +....+|+.|.+++|.+.
T Consensus 431 ~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~---i~p~~LHA~M~QKqRLkn 505 (731)
T KOG0347|consen 431 PQS-ATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLD---IPPLPLHASMIQKQRLKN 505 (731)
T ss_pred cch-hHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcC---CCCchhhHHHHHHHHHHh
Confidence 332 33445555667788888888888877766 5899999999999999999999765 888999999999999999
Q ss_pred HHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcCC
Q 009641 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457 (530)
Q Consensus 378 ~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~ 457 (530)
+++|+.....||||||+++||+|||+|+|||||..|.+.+.|+||.||++|++..|..++++.|.+...+.++...++..
T Consensus 506 LEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 506 LEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred HHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred -CCCCcCCChhHHhhhHHHHHHHH
Q 009641 458 -SCPIHSIPSSLIESLRPVYKSVR 480 (530)
Q Consensus 458 -~~~~~~~~~~~~~~~~~~~~~~~ 480 (530)
..+..++....++.+.+++.-+.
T Consensus 586 ~dlpifPv~~~~m~~lkeRvrLA~ 609 (731)
T KOG0347|consen 586 EDLPIFPVETDIMDALKERVRLAR 609 (731)
T ss_pred cCCCceeccHHHHHHHHHHHHHHH
Confidence 34556777777777777666554
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-59 Score=484.99 Aligned_cols=369 Identities=26% Similarity=0.407 Sum_probs=314.8
Q ss_pred CCCcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhh
Q 009641 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (530)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~ 95 (530)
.+|.....|+++ +|++.++++|.++||..|+|+|.++|+.++ .|+|+++.||||||||++|++|+++.+.
T Consensus 3 ~~~~~~~~f~~l------~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~ 72 (572)
T PRK04537 3 DKPLTDLTFSSF------DLHPALLAGLESAGFTRCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLL 72 (572)
T ss_pred CCccCCCChhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 445444457777 499999999999999999999999988876 4999999999999999999999999886
Q ss_pred hcC------CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh
Q 009641 96 NRA------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (530)
Q Consensus 96 ~~~------~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (530)
... ..+.++|||+||++|+.|+++.+..++...++++..++|+.....+... +
T Consensus 73 ~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~---------------------l 131 (572)
T PRK04537 73 SRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL---------------------L 131 (572)
T ss_pred hcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------H
Confidence 531 1246899999999999999999999999889999999999887665432 3
Q ss_pred cCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhh
Q 009641 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (530)
Q Consensus 170 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (530)
..+++|+|+||++|++++.+...+.+..+++|||||||++++.+|...+..++..++...
T Consensus 132 ~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~-------------------- 191 (572)
T PRK04537 132 QQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERG-------------------- 191 (572)
T ss_pred hCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhccccc--------------------
Confidence 356799999999999999875557788999999999999999999998988887765311
Q ss_pred hhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh
Q 009641 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329 (530)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 329 (530)
..|++++|||++..+..+....+..+..+...... .....+.+....+....|...+..++..
T Consensus 192 ----------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~L~~ll~~ 254 (572)
T PRK04537 192 ----------------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTLLLGLLSR 254 (572)
T ss_pred ----------------CceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHHHHHHHhc
Confidence 12789999999988888887777777655443322 1233445556666667788888888887
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEE
Q 009641 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (530)
Q Consensus 330 ~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~ 409 (530)
....++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~g---~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn 331 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERHG---YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN 331 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE
Confidence 778899999999999999999998765 89999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 410 ~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
||+|.+..+|+||+||+||.|..|.+++|+++.+...+.++.+.+.
T Consensus 332 yd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 332 YDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred cCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999888888866654
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.3e-59 Score=481.88 Aligned_cols=377 Identities=26% Similarity=0.456 Sum_probs=318.0
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc
Q 009641 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (530)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~ 97 (530)
|.+..+|+++ +|++.+.+.|.++||..|+|+|.+||+.++ .|+|+++.||||||||++|++|++.++...
T Consensus 117 p~pi~~f~~~------~l~~~l~~~L~~~g~~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~ 186 (518)
T PLN00206 117 PPPILSFSSC------GLPPKLLLNLETAGYEFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTI 186 (518)
T ss_pred CchhcCHHhC------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhh
Confidence 4455667777 499999999999999999999999998876 489999999999999999999999887532
Q ss_pred ------CCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 009641 98 ------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (530)
Q Consensus 98 ------~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (530)
...++++|||+||++||.|+.+.++.+....++++..+.|+.....+.. .+..
T Consensus 187 ~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~---------------------~l~~ 245 (518)
T PLN00206 187 RSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY---------------------RIQQ 245 (518)
T ss_pred ccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH---------------------HhcC
Confidence 1246789999999999999999999998888889888898887665543 2346
Q ss_pred CCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhh
Q 009641 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (530)
Q Consensus 172 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (530)
+++|+|+||++|.+++.+ ....++++++|||||||+|++.+|...+..++..++.
T Consensus 246 ~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~------------------------ 300 (518)
T PLN00206 246 GVELIVGTPGRLIDLLSK-HDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQ------------------------ 300 (518)
T ss_pred CCCEEEECHHHHHHHHHc-CCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCC------------------------
Confidence 789999999999999987 4677899999999999999999998888887765431
Q ss_pred ccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcC
Q 009641 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331 (530)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 331 (530)
.|++++|||++..+..+......++..+..+.... ....+.+....+....+...+..++....
T Consensus 301 ---------------~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~-~~~~v~q~~~~~~~~~k~~~l~~~l~~~~ 364 (518)
T PLN00206 301 ---------------PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR-PNKAVKQLAIWVETKQKKQKLFDILKSKQ 364 (518)
T ss_pred ---------------CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCcceeEEEEeccchhHHHHHHHHHHhhc
Confidence 27899999999999888888888888777654332 22344556666666777777888876543
Q ss_pred --CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEE
Q 009641 332 --EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (530)
Q Consensus 332 --~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~ 409 (530)
..++||||+++..++.+++.|... .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+
T Consensus 365 ~~~~~~iVFv~s~~~a~~l~~~L~~~--~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~ 442 (518)
T PLN00206 365 HFKPPAVVFVSSRLGADLLANAITVV--TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII 442 (518)
T ss_pred ccCCCEEEEcCCchhHHHHHHHHhhc--cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE
Confidence 468999999999999999999753 2378899999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHHhh
Q 009641 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 471 (530)
Q Consensus 410 ~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (530)
||+|.+..+|+||+||+||.|..|.+++|+++++...+..+.+.+.... ..+|+++...
T Consensus 443 ~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~---~~vp~~l~~~ 501 (518)
T PLN00206 443 FDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSG---AAIPRELANS 501 (518)
T ss_pred eCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcC---CCCCHHHHhC
Confidence 9999999999999999999999999999999999888888877776443 5667766543
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.6e-59 Score=478.33 Aligned_cols=359 Identities=27% Similarity=0.425 Sum_probs=314.6
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC
Q 009641 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (530)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~ 100 (530)
+.+|++++ |++.+.++|.++||.+|+|+|.+||+.++. |+|++++||||||||++|++|+++.+.... .
T Consensus 3 ~~~f~~l~------l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-~ 71 (460)
T PRK11776 3 MTAFSTLP------LPPALLANLNELGYTEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-F 71 (460)
T ss_pred CCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhcc-C
Confidence 34677774 999999999999999999999999888764 899999999999999999999999986543 3
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
..++||++||++|+.|+++.++.++... ++++..++|+.+...+... +..+++|+|+|
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---------------------l~~~~~IvV~T 130 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---------------------LEHGAHIIVGT 130 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---------------------hcCCCCEEEEC
Confidence 5579999999999999999999987654 7899999999887766433 33677999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCC
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (530)
|++|.+++.+ +.+.++++++||+||||+|++.+|...+..++..++.
T Consensus 131 p~rl~~~l~~-~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~-------------------------------- 177 (460)
T PRK11776 131 PGRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA-------------------------------- 177 (460)
T ss_pred hHHHHHHHHc-CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc--------------------------------
Confidence 9999999987 5677889999999999999999999999998887653
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEc
Q 009641 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (530)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~ 339 (530)
..|++++|||+++.+..+....+.+|..+...... ....+.++++......|...+..++......++||||
T Consensus 178 ------~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~ 249 (460)
T PRK11776 178 ------RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFC 249 (460)
T ss_pred ------ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEE
Confidence 22789999999999888888888888877665432 2234566666677777888999999888888999999
Q ss_pred CChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHH
Q 009641 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (530)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y 419 (530)
++++.++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|
T Consensus 250 ~t~~~~~~l~~~L~~~~---~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~y 326 (460)
T PRK11776 250 NTKKECQEVADALNAQG---FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVH 326 (460)
T ss_pred CCHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHh
Confidence 99999999999999776 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 420 ~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
+||+||+||.|+.|.+++|+.++|...+..+.+...
T Consensus 327 iqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 327 VHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred hhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999888887766553
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.4e-59 Score=473.49 Aligned_cols=359 Identities=31% Similarity=0.483 Sum_probs=309.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC---
Q 009641 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--- 99 (530)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~--- 99 (530)
+|+++ +|++.+.++|.++||..|+|+|.+|++.++. ++|++++||||||||++|++|+++.+.....
T Consensus 2 ~f~~l------~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~ 71 (456)
T PRK10590 2 SFDSL------GLSPDILRAVAEQGYREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71 (456)
T ss_pred CHHHc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccc
Confidence 46666 4999999999999999999999999888764 8999999999999999999999999865321
Q ss_pred --CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 009641 100 --RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (530)
Q Consensus 100 --~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 177 (530)
...++|||+||++||.|+.+.++.+....++.+..++|+.+...+... +...++|+|
T Consensus 72 ~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---------------------l~~~~~IiV 130 (456)
T PRK10590 72 GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---------------------LRGGVDVLV 130 (456)
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---------------------HcCCCcEEE
Confidence 234799999999999999999999998889999999999887665432 345679999
Q ss_pred eCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhcccccc
Q 009641 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (530)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (530)
+||++|++++.. ..+.++++++|||||||++++.+|...+..++..++.
T Consensus 131 ~TP~rL~~~~~~-~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~------------------------------ 179 (456)
T PRK10590 131 ATPGRLLDLEHQ-NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA------------------------------ 179 (456)
T ss_pred EChHHHHHHHHc-CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCc------------------------------
Confidence 999999998876 5567899999999999999999998888888776542
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEE
Q 009641 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (530)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iV 337 (530)
..|.+++|||++..+..+....+.++..+...... .....+.++....+...+...+..++......++||
T Consensus 180 --------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lV 250 (456)
T PRK10590 180 --------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLV 250 (456)
T ss_pred --------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEE
Confidence 22789999999988888888888888766554332 223445556666666677777777777777789999
Q ss_pred EcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChh
Q 009641 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (530)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~ 417 (530)
||+++..++.+++.|...+ +.+..+||+|++.+|.++++.|++|+.+|||||+++++|||+|++++||+|++|.++.
T Consensus 251 F~~t~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~ 327 (456)
T PRK10590 251 FTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPE 327 (456)
T ss_pred EcCcHHHHHHHHHHHHHCC---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHH
Confidence 9999999999999998765 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 418 ~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
+|+||+||+||.|..|.+++|+..+|...++.+.+.+.
T Consensus 328 ~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~ 365 (456)
T PRK10590 328 DYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLK 365 (456)
T ss_pred HhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999888888877654
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.5e-59 Score=480.06 Aligned_cols=358 Identities=27% Similarity=0.441 Sum_probs=311.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcc
Q 009641 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (530)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~ 102 (530)
+|+++ +|++.++++|.++||.+|+|+|.++|+.++ .++|+|++||||||||++|++|+++.+... ..++
T Consensus 7 ~f~~l------~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll----~g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~ 75 (629)
T PRK11634 7 TFADL------GLKAPILEALNDLGYEKPSPIQAECIPHLL----NGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAP 75 (629)
T ss_pred CHhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCC
Confidence 46666 499999999999999999999999988876 489999999999999999999999988653 2456
Q ss_pred cEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 009641 103 RALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (530)
Q Consensus 103 ~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~ 181 (530)
++|||+||++||.|+++.+.++.... ++.+..++|+.+...+... +..+++|+|+||+
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---------------------l~~~~~IVVgTPg 134 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---------------------LRQGPQIVVGTPG 134 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---------------------hcCCCCEEEECHH
Confidence 89999999999999999999987665 7899999999876665433 3456899999999
Q ss_pred HHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCC
Q 009641 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (530)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (530)
++++++.+ ..+.++++++||+||||+|++++|...+..++..++..
T Consensus 135 rl~d~l~r-~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~--------------------------------- 180 (629)
T PRK11634 135 RLLDHLKR-GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG--------------------------------- 180 (629)
T ss_pred HHHHHHHc-CCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCC---------------------------------
Confidence 99999987 56788999999999999999999999999998876532
Q ss_pred CCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCC
Q 009641 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (530)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s 341 (530)
.|+++||||++..+..+...++.++..+........ ...+.+.++......|...|..++......++||||++
T Consensus 181 -----~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~-~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~t 254 (629)
T PRK11634 181 -----HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTT-RPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRT 254 (629)
T ss_pred -----CeEEEEEccCChhHHHHHHHHcCCCeEEEccCcccc-CCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEecc
Confidence 278999999999998888888888877765544322 23445555566666788888888887777899999999
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHH
Q 009641 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (530)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Q 421 (530)
+..+..+++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+.++|+|
T Consensus 255 k~~a~~l~~~L~~~g---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvq 331 (629)
T PRK11634 255 KNATLEVAEALERNG---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVH 331 (629)
T ss_pred HHHHHHHHHHHHhCC---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHH
Confidence 999999999999776 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 422 r~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
|+||+||+|+.|.+++|+.+.|...++.+.+..+
T Consensus 332 RiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 332 RIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred HhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999999999999888887766543
No 20
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-60 Score=435.04 Aligned_cols=394 Identities=29% Similarity=0.417 Sum_probs=337.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc----
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---- 97 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~---- 97 (530)
.+|+++ +|++.+++++.+.||++||-+|..||+.++ .|+|+++.|.||||||.+|++|+++.+...
T Consensus 19 ktFe~~------gLD~RllkAi~~lG~ekpTlIQs~aIplaL----EgKDvvarArTGSGKT~AYliPllqkll~~k~t~ 88 (569)
T KOG0346|consen 19 KTFEEF------GLDSRLLKAITKLGWEKPTLIQSSAIPLAL----EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN 88 (569)
T ss_pred ccHHHh------CCCHHHHHHHHHhCcCCcchhhhcccchhh----cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc
Confidence 467777 599999999999999999999999866554 599999999999999999999999998764
Q ss_pred -CCCcccEEEEcCcHHHHHHHHHHHHHhccccC--ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCc
Q 009641 98 -AVRCLRALVVLPTRDLALQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (530)
Q Consensus 98 -~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (530)
...++.++|++||++||.|++..+.++...++ +++.-+..+.+..... ..+...|+
T Consensus 89 ~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~---------------------~~L~d~pd 147 (569)
T KOG0346|consen 89 DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS---------------------VALMDLPD 147 (569)
T ss_pred cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH---------------------HHHccCCC
Confidence 23578899999999999999999998866653 3444344333333222 23456789
Q ss_pred EEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccc
Q 009641 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254 (530)
Q Consensus 175 Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (530)
|+|+||++++.++.......+..++++|+||||.+++-||.+.+..+.+.+|..
T Consensus 148 IvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~-------------------------- 201 (569)
T KOG0346|consen 148 IVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRI-------------------------- 201 (569)
T ss_pred eEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCch--------------------------
Confidence 999999999999987544678899999999999999999999999999988742
Q ss_pred cccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH-hcCCC
Q 009641 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEE 333 (530)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~ 333 (530)
.|.+++|||+..++..+..+.+++|+++.......+.+..+.+|.+.|.+.+|+..++.+++ ..-.+
T Consensus 202 ------------~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~g 269 (569)
T KOG0346|consen 202 ------------YQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRG 269 (569)
T ss_pred ------------hhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcC
Confidence 38899999999999999999999999999888888888999999999999999999999987 55679
Q ss_pred cEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec--------------------
Q 009641 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-------------------- 393 (530)
Q Consensus 334 ~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-------------------- 393 (530)
++|||+|+++.|.++.-.|.++| ++.++++|.||...|.-++++|..|-++++||||
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFG---iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFG---IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhC---cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccC
Confidence 99999999999999999999887 8999999999999999999999999999999999
Q ss_pred ---------------ccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHH---HHHHHHHHh-
Q 009641 394 ---------------AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKA- 454 (530)
Q Consensus 394 ---------------~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~---~~~~~~~~~- 454 (530)
-.+||||+..|.+|+|||+|.++.+|+||+||++|++++|.+++|+.|.+.. .++.+....
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~ 426 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDEN 426 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHH
Confidence 2679999999999999999999999999999999999999999999999866 334333332
Q ss_pred ---cCCCCCCcCCChhHHhhhHHHHHHHHhccchhh
Q 009641 455 ---DNDSCPIHSIPSSLIESLRPVYKSVRGGISDEA 487 (530)
Q Consensus 455 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (530)
+.....+..+.-+.+|.|+.+.++++.....-+
T Consensus 427 ~~~~~qilqPY~f~~eevesfryR~eD~~ravTkvA 462 (569)
T KOG0346|consen 427 RQEGRQILQPYQFRMEEVESFRYRAEDALRAVTKVA 462 (569)
T ss_pred hhcCccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 223455566777889999999888877665543
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2e-58 Score=467.57 Aligned_cols=359 Identities=30% Similarity=0.451 Sum_probs=306.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC---C
Q 009641 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---V 99 (530)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~---~ 99 (530)
+|+++ +|++.++++|.++||.+|+++|.+|++.++. |+|+++.||||+|||++|++|+++.+.... .
T Consensus 2 ~f~~l------~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~ 71 (434)
T PRK11192 2 TFSEL------ELDESLLEALQDKGYTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKS 71 (434)
T ss_pred CHhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCC
Confidence 46777 4999999999999999999999999988774 899999999999999999999999886531 2
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
...++||++||++|+.|+++.+..++...++++..++|+.....+... +..+++|+|+|
T Consensus 72 ~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---------------------l~~~~~IlV~T 130 (434)
T PRK11192 72 GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV---------------------FSENQDIVVAT 130 (434)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHH---------------------hcCCCCEEEEC
Confidence 346899999999999999999999999999999999999876655332 33567999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCC
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (530)
|++|++++.+ ..+.+.++++|||||||++++++|...+..+...++.
T Consensus 131 p~rl~~~~~~-~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~-------------------------------- 177 (434)
T PRK11192 131 PGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW-------------------------------- 177 (434)
T ss_pred hHHHHHHHHc-CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc--------------------------------
Confidence 9999999987 5678889999999999999999999888888765432
Q ss_pred CCCCCCceeeEEEeEeecC-ChhhhhhhccCCceEEecCCccccCcccceeeEeecc-CCCcHHHHHHHHHhcCCCcEEE
Q 009641 260 KDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIV 337 (530)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~iV 337 (530)
..|.+++|||++. .+..+....+.++..+....... ....+.+++...+ ...+...+..+++.....++||
T Consensus 178 ------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lV 250 (434)
T PRK11192 178 ------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRR-ERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIV 250 (434)
T ss_pred ------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcc-cccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 1278999999975 36667777777887776554332 2333445554444 4567778888887767789999
Q ss_pred EcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChh
Q 009641 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (530)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~ 417 (530)
||++++.++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+..
T Consensus 251 F~~s~~~~~~l~~~L~~~~---~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~ 327 (434)
T PRK11192 251 FVRTRERVHELAGWLRKAG---INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSAD 327 (434)
T ss_pred EeCChHHHHHHHHHHHhCC---CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHH
Confidence 9999999999999998765 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 418 ~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
.|+||+||+||.|..|.+++|+...|...+.++.+.+.
T Consensus 328 ~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 328 TYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred HHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888888765543
No 22
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-60 Score=421.58 Aligned_cols=355 Identities=27% Similarity=0.463 Sum_probs=326.0
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
+|.++++..+.+.||+.|.|+|.++++. .+.|+|+++.|..|+|||.+|.+|+++.+.... ...+++|++|||+|
T Consensus 91 ~Lkr~LLmgIfe~G~ekPSPiQeesIPi----aLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-~~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 91 CLKRELLMGIFEKGFEKPSPIQEESIPI----ALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-NVIQAIILVPTREL 165 (459)
T ss_pred hhhHHHHHHHHHhccCCCCCccccccce----eecchhhhhhccCCCCCccceechhhhhcCccc-cceeEEEEeecchh
Confidence 5899999999999999999999998554 456999999999999999999999999987643 56789999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCC
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~ 193 (530)
|.|..+.++++++.+++.+.+.+||++..++.- ++....+++|+||++++++..+ +.-
T Consensus 166 ALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~---------------------Rl~~~VH~~vgTPGRIlDL~~K-gVa 223 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIM---------------------RLNQTVHLVVGTPGRILDLAKK-GVA 223 (459)
T ss_pred hHHHHHHHHHHhcccCeEEEEecCCccccccee---------------------eecCceEEEEcCChhHHHHHhc-ccc
Confidence 999999999999999999999999999877743 3457789999999999999987 556
Q ss_pred CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEe
Q 009641 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (530)
Q Consensus 194 ~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (530)
.+++..++|+||||.+++..|...++.++..++... |.+++|
T Consensus 224 ~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r--------------------------------------QillyS 265 (459)
T KOG0326|consen 224 DLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER--------------------------------------QILLYS 265 (459)
T ss_pred cchhceEEEechhhhhhchhhhhHHHHHHHhCCccc--------------------------------------eeeEEe
Confidence 789999999999999999999999999999887533 899999
Q ss_pred EeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHH
Q 009641 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (530)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~ 353 (530)
||.|-.+..+...++..|..++.... -....+.+|+.+..+..|...|..++.+..-.++||||||...++.+++.+.
T Consensus 266 ATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKIT 343 (459)
T KOG0326|consen 266 ATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKIT 343 (459)
T ss_pred cccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHH
Confidence 99999999999999999999887654 3345778999999999999999999999888999999999999999999999
Q ss_pred hcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCc
Q 009641 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (530)
Q Consensus 354 ~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g 433 (530)
+.| +.+.++|+.|-++.|..+..+|++|.++.|||||.+-||||++.+++|||||.|+++++|+||+||.||+|..|
T Consensus 344 elG---yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 344 ELG---YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred hcc---chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 877 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeecchHHHHHHHHHHhcCCC
Q 009641 434 RCFTLLHKDEVKRFKKLLQKADNDS 458 (530)
Q Consensus 434 ~~i~~~~~~~~~~~~~~~~~~~~~~ 458 (530)
.++.+++-+|...+.++.++++...
T Consensus 421 lAInLityedrf~L~~IE~eLGtEI 445 (459)
T KOG0326|consen 421 LAINLITYEDRFNLYRIEQELGTEI 445 (459)
T ss_pred eEEEEEehhhhhhHHHHHHHhcccc
Confidence 9999999999999999999987543
No 23
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-59 Score=438.47 Aligned_cols=377 Identities=34% Similarity=0.511 Sum_probs=312.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc-----
Q 009641 24 FEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR----- 97 (530)
Q Consensus 24 ~~~~~~~~~~~l~~~i~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~----- 97 (530)
|....|..+ +|+|.+.+.|.. |+++.||.+|+++|+.++. |+|++|.++||||||++|++|+++.+...
T Consensus 133 fts~~f~~L-GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~ 207 (708)
T KOG0348|consen 133 FTSAAFASL-GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ 207 (708)
T ss_pred cccccchhc-CCCHHHHHHHHHHhccCccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc
Confidence 333334433 799999999997 8999999999999888765 99999999999999999999999999763
Q ss_pred CCCcccEEEEcCcHHHHHHHHHHHHHhccccCceE-EEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEE
Q 009641 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV-GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (530)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 176 (530)
...|+-+|||+|||+||.|+++.+.++.+...+-| +.+.||.....+ ..+++.+++|+
T Consensus 208 Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSE---------------------KARLRKGiNIL 266 (708)
T KOG0348|consen 208 RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSE---------------------KARLRKGINIL 266 (708)
T ss_pred ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccH---------------------HHHHhcCceEE
Confidence 23578899999999999999999999987765433 556666653333 24577899999
Q ss_pred EeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccc
Q 009641 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (530)
Q Consensus 177 i~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (530)
|+||+||++++.+.+.+.++.+++||+||||++++.||...+..|+..+......
T Consensus 267 IgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~------------------------- 321 (708)
T KOG0348|consen 267 IGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNA------------------------- 321 (708)
T ss_pred EcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccch-------------------------
Confidence 9999999999999888999999999999999999999999999999887431100
Q ss_pred cCCCCCC-CCceeeEEEeEeecCChhhhhhhccCCceEEecCC------------------------ccccCcccceeeE
Q 009641 257 RGFKDKP-YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE------------------------TRYKLPERLESYK 311 (530)
Q Consensus 257 ~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~ 311 (530)
.+.+.. .+..|.+++|||++..+..+....+.+|+.+..+. ....+|..+.+.+
T Consensus 322 -e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry 400 (708)
T KOG0348|consen 322 -ECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRY 400 (708)
T ss_pred -hcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhce
Confidence 011111 12458899999999999999999999999887221 1134566677778
Q ss_pred eeccCCCcHHHHHHHHHh----cCCCcEEEEcCChHHHHHHHHHHHhcCC-------------------CcceEEEcccc
Q 009641 312 LICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGL 368 (530)
Q Consensus 312 ~~~~~~~k~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~L~~~~~-------------------~~~~v~~~h~~ 368 (530)
.+++...++..|..++.. ....++|||+++.+.++.-+..|..... .+.++..+||+
T Consensus 401 ~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs 480 (708)
T KOG0348|consen 401 TVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS 480 (708)
T ss_pred EecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc
Confidence 888888888888887753 3567999999999999988888754210 23478899999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHH
Q 009641 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 448 (530)
Q Consensus 369 ~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~ 448 (530)
|++++|..+++.|...+..||+|||+++||+|+|+|++||+||+|.++.+|+||+||++|+|.+|.+++|+.|.|.+++.
T Consensus 481 m~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 481 MEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred hhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988444
Q ss_pred HHHHH
Q 009641 449 KLLQK 453 (530)
Q Consensus 449 ~~~~~ 453 (530)
.++.
T Consensus 561 -~l~~ 564 (708)
T KOG0348|consen 561 -YLKK 564 (708)
T ss_pred -HHHh
Confidence 4444
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.9e-57 Score=461.05 Aligned_cols=357 Identities=29% Similarity=0.429 Sum_probs=306.1
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC------CcccEEEE
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVV 107 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~------~~~~~lil 107 (530)
+|++.+.++|.++||..|+++|.+||+.++ .|+|+++.+|||||||++|++|+++.+..... ...++|||
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil 168 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALII 168 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEE
Confidence 599999999999999999999999988876 48999999999999999999999999876431 14689999
Q ss_pred cCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHH
Q 009641 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (530)
Q Consensus 108 ~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l 187 (530)
+||++|+.|+++.++.+.+..++++..++|+.+...+...+. ...++|+|+||++|+.++
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~--------------------~~~~~Iiv~TP~~Ll~~~ 228 (475)
T PRK01297 169 APTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE--------------------ARFCDILVATPGRLLDFN 228 (475)
T ss_pred eCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHh--------------------CCCCCEEEECHHHHHHHH
Confidence 999999999999999999888999999999987666543321 245799999999999988
Q ss_pred hcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCce
Q 009641 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (530)
Q Consensus 188 ~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (530)
.+ ....++++++|||||||++++.++...+..++..++... ..
T Consensus 229 ~~-~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~------------------------------------~~ 271 (475)
T PRK01297 229 QR-GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKE------------------------------------ER 271 (475)
T ss_pred Hc-CCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCC------------------------------------Cc
Confidence 76 456788999999999999999888888888877654211 22
Q ss_pred eeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHH
Q 009641 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (530)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~ 347 (530)
|++++|||++.++..+...+..++..+........ ...+.+.........+...+..++......++||||++++.++.
T Consensus 272 q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~ 350 (475)
T PRK01297 272 QTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVA-SDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRR 350 (475)
T ss_pred eEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCC-CCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHH
Confidence 78999999998888888888888877765443322 23344455555667788888888887777899999999999999
Q ss_pred HHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhh
Q 009641 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (530)
Q Consensus 348 l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~g 427 (530)
+++.|...+ +.+..+||++++.+|.++++.|++|+.+|||||+++++|||+|++++||+|++|.+..+|+||+||+|
T Consensus 351 l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaG 427 (475)
T PRK01297 351 IEERLVKDG---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTG 427 (475)
T ss_pred HHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccC
Confidence 999998765 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 428 RAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 428 R~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
|.|+.|.+++|++++|...+..+.+.+.
T Consensus 428 R~g~~g~~i~~~~~~d~~~~~~~~~~~~ 455 (475)
T PRK01297 428 RAGASGVSISFAGEDDAFQLPEIEELLG 455 (475)
T ss_pred CCCCCceEEEEecHHHHHHHHHHHHHhC
Confidence 9999999999999998887787766654
No 25
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-58 Score=423.55 Aligned_cols=378 Identities=28% Similarity=0.449 Sum_probs=325.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc-----CCCccc
Q 009641 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLR 103 (530)
Q Consensus 29 ~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~-----~~~~~~ 103 (530)
|++.+...|++.+.+++.||.+|+|+|.+||+.++ +|.|++..|.||+|||++|++|-+.++... ...++.
T Consensus 221 FddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~ 296 (629)
T KOG0336|consen 221 FDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPG 296 (629)
T ss_pred HHHHHhhhHHHHHHHHhccCCCCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCc
Confidence 34445788999999999999999999999988654 699999999999999999999977666443 235788
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH
Q 009641 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183 (530)
Q Consensus 104 ~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l 183 (530)
+|+++||++|+.|+.-+..++. +.+.+..+++|+.+..++... +..+.+|+|+||++|
T Consensus 297 ~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~---------------------lkrgveiiiatPgrl 354 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIED---------------------LKRGVEIIIATPGRL 354 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHH---------------------HhcCceEEeeCCchH
Confidence 9999999999999988887764 347888888888887776543 457889999999999
Q ss_pred HHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCC
Q 009641 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (530)
Q Consensus 184 ~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (530)
.++... ..+++.++.++|+||||+|++++|...+..|+-.++
T Consensus 355 ndL~~~-n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------------------------- 396 (629)
T KOG0336|consen 355 NDLQMD-NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------------------------- 396 (629)
T ss_pred hhhhhc-CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC-------------------------------------
Confidence 988776 678899999999999999999999999999986654
Q ss_pred CCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhc-CCCcEEEEcCCh
Q 009641 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSV 342 (530)
Q Consensus 264 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~iVf~~s~ 342 (530)
|..|+++.|||+|..+..++..++++|.++..+.-.......+.+..+.....+|...+-.++... ...++||||.+.
T Consensus 397 -PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K 475 (629)
T KOG0336|consen 397 -PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRK 475 (629)
T ss_pred -CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEech
Confidence 445899999999999999999999999999888777666677778877788888888887777754 567999999999
Q ss_pred HHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHH
Q 009641 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 422 (530)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr 422 (530)
..|+.+..-|.-.+ +.+..+||+-.+.+|+..++.|++|+++||||||++++|+|+|+++||++||+|.+++.|+||
T Consensus 476 ~~AD~LSSd~~l~g---i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHR 552 (629)
T KOG0336|consen 476 VMADHLSSDFCLKG---ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHR 552 (629)
T ss_pred hhhhhccchhhhcc---cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHH
Confidence 99988887776444 888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHHhhhHHHHHH
Q 009641 423 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478 (530)
Q Consensus 423 ~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (530)
+||+||+|+.|.+++|++.+|......+++-+.... .++|+++.. ..++|+.
T Consensus 553 vGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ae---QevPdeL~~-mAeryk~ 604 (629)
T KOG0336|consen 553 VGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAE---QEVPDELVR-MAERYKL 604 (629)
T ss_pred hcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhh---hhCcHHHHH-HHHHHHh
Confidence 999999999999999999999988888888776544 677777653 3334433
No 26
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-57 Score=430.12 Aligned_cols=357 Identities=29% Similarity=0.433 Sum_probs=305.8
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC---------CcccE
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---------RCLRA 104 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~---------~~~~~ 104 (530)
.+...+...++..||..|+|+|+.+++.+ ..|++++++|+||||||.+|++|++..+..... ..+.+
T Consensus 80 ~l~~~l~~ni~~~~~~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~ 155 (482)
T KOG0335|consen 80 ILGEALAGNIKRSGYTKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRA 155 (482)
T ss_pred chhHHHhhccccccccCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCce
Confidence 58889999999999999999999986654 459999999999999999999999999987532 25789
Q ss_pred EEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHH
Q 009641 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184 (530)
Q Consensus 105 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~ 184 (530)
+|++|||+|+.|++++.+++.-..++++...+|+.+...+.. .+..+++|+|+||++|.
T Consensus 156 lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~---------------------~~~~gcdIlvaTpGrL~ 214 (482)
T KOG0335|consen 156 LILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLR---------------------FIKRGCDILVATPGRLK 214 (482)
T ss_pred EEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhh---------------------hhccCccEEEecCchhh
Confidence 999999999999999999998888999999999977666543 34578999999999999
Q ss_pred HHHhcCCCCCCCCccEEEEechhHhhh-HhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCC
Q 009641 185 DHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (530)
Q Consensus 185 ~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (530)
+++.. +.+.++.++++|+||||+|++ .+|...++.|+.......
T Consensus 215 d~~e~-g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~---------------------------------- 259 (482)
T KOG0335|consen 215 DLIER-GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP---------------------------------- 259 (482)
T ss_pred hhhhc-ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC----------------------------------
Confidence 99987 678899999999999999999 999999999998765422
Q ss_pred CCceeeEEEeEeecCChhhhhhhccCC-ceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcC----CC-----
Q 009641 264 YPRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG----EE----- 333 (530)
Q Consensus 264 ~~~~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~----~~----- 333 (530)
....|.++||||.+..+..+...++.+ .+++.+.... .....+.+-...+....|...|..+|.... .+
T Consensus 260 ~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e 338 (482)
T KOG0335|consen 260 KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWE 338 (482)
T ss_pred ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccc
Confidence 123489999999999999988888776 5555544333 233455566666777888888888887433 33
Q ss_pred cEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC
Q 009641 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (530)
Q Consensus 334 ~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p 413 (530)
+++|||.+++.|..++..|...+ +++..+||.-++.+|.+.++.|+.|...+||||++++||+|+|+|++||+||+|
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~~---~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP 415 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSNG---YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMP 415 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcCC---CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecC
Confidence 89999999999999999999776 899999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHh
Q 009641 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (530)
Q Consensus 414 ~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~ 454 (530)
.+..+|+||+||+||.|+.|.++.|++..+....+.+.+-+
T Consensus 416 ~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l 456 (482)
T KOG0335|consen 416 ADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEIL 456 (482)
T ss_pred cchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHH
Confidence 99999999999999999999999999966655545444444
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.2e-55 Score=439.88 Aligned_cols=359 Identities=24% Similarity=0.420 Sum_probs=299.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCc
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~ 101 (530)
.+|+++ ++++.+.++|.++||..|+|+|.+||+.++. ++|+++.||||||||++|++|+++.+... ..+
T Consensus 28 ~~~~~l------~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~-~~~ 96 (401)
T PTZ00424 28 DSFDAL------KLNEDLLRGIYSYGFEKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYD-LNA 96 (401)
T ss_pred CCHhhC------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCC-CCC
Confidence 445555 4999999999999999999999999888764 89999999999999999999999887543 245
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~ 181 (530)
.++||++||++|+.|+.+.+..++...++.+....|+....++.. .+..+++|+|+||+
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~ 155 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDIN---------------------KLKAGVHMVVGTPG 155 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHH---------------------HHcCCCCEEEECcH
Confidence 689999999999999999999998888888888888887655433 23356799999999
Q ss_pred HHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCC
Q 009641 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (530)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (530)
++.+.+.+ ....++++++||+||||++.+.++...+..++..++
T Consensus 156 ~l~~~l~~-~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~----------------------------------- 199 (401)
T PTZ00424 156 RVYDMIDK-RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP----------------------------------- 199 (401)
T ss_pred HHHHHHHh-CCcccccccEEEEecHHHHHhcchHHHHHHHHhhCC-----------------------------------
Confidence 99999886 456788999999999999998888777777665543
Q ss_pred CCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccC-CCcHHHHHHHHHhcCCCcEEEEcC
Q 009641 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTS 340 (530)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~iVf~~ 340 (530)
+..+++++|||++.....+...+..++..+........ ...+.+++..... ..+...+..+++.....++||||+
T Consensus 200 ---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~ 275 (401)
T PTZ00424 200 ---PDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELT-LEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCN 275 (401)
T ss_pred ---CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcc-cCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 23389999999998877777777777765544332222 2333444443332 345566677777667789999999
Q ss_pred ChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHH
Q 009641 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (530)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~ 420 (530)
+++.++.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||++|+|.+..+|+
T Consensus 276 t~~~~~~l~~~l~~~~---~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~ 352 (401)
T PTZ00424 276 TRRKVDYLTKKMHERD---FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYI 352 (401)
T ss_pred CcHHHHHHHHHHHHCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEe
Confidence 9999999999998765 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 421 Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
||+||+||.|+.|.|++|+++++...+..+.+...
T Consensus 353 qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 353 HRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYN 387 (401)
T ss_pred ecccccccCCCCceEEEEEcHHHHHHHHHHHHHHC
Confidence 99999999999999999999999888888766654
No 28
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-55 Score=410.89 Aligned_cols=380 Identities=27% Similarity=0.422 Sum_probs=333.6
Q ss_pred CCCCcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHh
Q 009641 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l 94 (530)
+..|.++.+|+.. +++..+..++.+-.|.+|||+|.++++ -.+.|++++-.|.||||||.+|+.|++-++
T Consensus 216 ~s~~rpvtsfeh~------gfDkqLm~airk~Ey~kptpiq~qalp----talsgrdvigIAktgSgktaAfi~pm~~hi 285 (731)
T KOG0339|consen 216 SSPPRPVTSFEHF------GFDKQLMTAIRKSEYEKPTPIQCQALP----TALSGRDVIGIAKTGSGKTAAFIWPMIVHI 285 (731)
T ss_pred CCCCCCcchhhhc------CchHHHHHHHhhhhcccCCcccccccc----cccccccchheeeccCcchhHHHHHHHHHh
Confidence 4567888888888 478999999999999999999999754 445799999999999999999999999888
Q ss_pred hhc----CCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc
Q 009641 95 SNR----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (530)
Q Consensus 95 ~~~----~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (530)
... ...++..||+||||+||.|++.++++|++..++++++++||.+.+++.+.+ .
T Consensus 286 mdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~L---------------------k 344 (731)
T KOG0339|consen 286 MDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKEL---------------------K 344 (731)
T ss_pred cchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhh---------------------h
Confidence 764 236789999999999999999999999999999999999999999987653 4
Q ss_pred CCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhh
Q 009641 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (530)
Q Consensus 171 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (530)
.++.|+||||+||++++.- +..++.++++||||||++|++.+|...++.|..+++.
T Consensus 345 ~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirp----------------------- 400 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRP----------------------- 400 (731)
T ss_pred cCCeEEEechHHHHHHHHh-hcccceeeeEEEEechhhhhccccHHHHHHHHhhcCC-----------------------
Confidence 7889999999999999986 7788999999999999999999999999999988763
Q ss_pred hccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH-h
Q 009641 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-S 329 (530)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~ 329 (530)
..|+++||||....+..+++..+.+|+.+..+..........+...+......|+..|..-|. .
T Consensus 401 ---------------drQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f 465 (731)
T KOG0339|consen 401 ---------------DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEF 465 (731)
T ss_pred ---------------cceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhh
Confidence 449999999999999999999999999887765443333333344444455667777766554 4
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEE
Q 009641 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (530)
Q Consensus 330 ~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~ 409 (530)
...+++|||+.-...++.++..|.-.+ +.+..+||+|.+.+|.+++.+|+++...|||+||++++|+|||++..||+
T Consensus 466 ~S~gkvlifVTKk~~~e~i~a~Lklk~---~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn 542 (731)
T KOG0339|consen 466 SSEGKVLIFVTKKADAEEIAANLKLKG---FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN 542 (731)
T ss_pred ccCCcEEEEEeccCCHHHHHHHhcccc---ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec
Confidence 567899999999999999999998766 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHHh
Q 009641 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 470 (530)
Q Consensus 410 ~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (530)
||.-.+++.|.||+||+||+|.+|.+++++++.|......+.+.+.+.. ..+|+++.+
T Consensus 543 yD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ag---QnVP~~l~d 600 (731)
T KOG0339|consen 543 YDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAG---QNVPDELMD 600 (731)
T ss_pred ccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhcc---ccCChHHHH
Confidence 9999999999999999999999999999999999998888888887655 677777654
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-54 Score=392.01 Aligned_cols=362 Identities=24% Similarity=0.347 Sum_probs=303.5
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC
Q 009641 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (530)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~ 98 (530)
..+++|+++. |.|++++.+..|+|..|+.+|..|++-++.. ..+++|.++..|+|||.||.+.|+.++.-.
T Consensus 87 yS~ksFeeL~------LkPellkgly~M~F~kPskIQe~aLPlll~~--Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~- 157 (477)
T KOG0332|consen 87 YSAKSFEELR------LKPELLKGLYAMKFQKPSKIQETALPLLLAE--PPQNLIAQSQSGTGKTAAFVLTMLSRVDPD- 157 (477)
T ss_pred cccccHHhhC------CCHHHHhHHHHhccCCcchHHHhhcchhhcC--CchhhhhhhcCCCchhHHHHHHHHHhcCcc-
Confidence 3456788884 9999999999999999999999997766542 358999999999999999999999998764
Q ss_pred CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 009641 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (530)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (530)
...+.++.|+|||+||.|+.+.+.+.+++.++.+....-+.....-. .-..+|+|+
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~------------------------~i~eqIviG 213 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN------------------------KLTEQIVIG 213 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC------------------------cchhheeeC
Confidence 35678999999999999999999999999888877766655211100 012389999
Q ss_pred CChHHHHHHhcCCCCCCCCccEEEEechhHhhhH-hhhhHHHHHHhhcccCcccccccccccccccccchhhhhcccccc
Q 009641 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (530)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (530)
||+.+++++...+-+.+..++.+|+||||.|++. ||++.--.|...++.
T Consensus 214 TPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~------------------------------ 263 (477)
T KOG0332|consen 214 TPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR------------------------------ 263 (477)
T ss_pred CCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC------------------------------
Confidence 9999999998866778899999999999998764 566666666655542
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeecc-CCCcHHHHHHHHHhcCCCcEE
Q 009641 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCI 336 (530)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~i 336 (530)
..|.++||||....+..++.....++..+........+. .+.+++..|. ...|+..|.++.....-+..|
T Consensus 264 --------~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~-~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsi 334 (477)
T KOG0332|consen 264 --------NQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALD-NIKQLYVLCACRDDKYQALVNLYGLLTIGQSI 334 (477)
T ss_pred --------cceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcccc-chhhheeeccchhhHHHHHHHHHhhhhhhheE
Confidence 338999999999999999998888888777766655554 4556666554 578999999988888889999
Q ss_pred EEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC--
Q 009641 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-- 414 (530)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~-- 414 (530)
|||.|++.|..++..|...| ..|..+||+|...+|..++++|+.|..+|||+|++++||||++.+++|||||+|.
T Consensus 335 IFc~tk~ta~~l~~~m~~~G---h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~ 411 (477)
T KOG0332|consen 335 IFCHTKATAMWLYEEMRAEG---HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKY 411 (477)
T ss_pred EEEeehhhHHHHHHHHHhcC---ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCcccc
Confidence 99999999999999999877 8999999999999999999999999999999999999999999999999999994
Q ss_pred ----ChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 415 ----YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 415 ----s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
+++.|+||+||+||+|+.|.++.|+...+...+.+-+++..
T Consensus 412 ~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 412 TGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred CCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 68899999999999999999999998876555444444444
No 30
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.1e-55 Score=399.37 Aligned_cols=362 Identities=27% Similarity=0.455 Sum_probs=307.4
Q ss_pred ccCCccC-CCCCCcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHH
Q 009641 7 KSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (530)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (530)
+.|.++. ==..|.+.++|-++. ++..+++.|++.|+..|||+|.+.++.+ +.|+|+|-.|-||||||++
T Consensus 154 k~~~I~veGd~ipPPIksF~eMK------FP~~~L~~lk~KGI~~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlv 223 (610)
T KOG0341|consen 154 KQLHILVEGDDIPPPIKSFKEMK------FPKPLLRGLKKKGIVHPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLV 223 (610)
T ss_pred HhheEEeeCCCCCCchhhhhhcc------CCHHHHHHHHhcCCCCCCceeecCcceE----eecCceeeEEeecCCceEE
Confidence 3444443 223466778888885 8899999999999999999999986554 4699999999999999999
Q ss_pred HHHHHHHHhhhc-------CCCcccEEEEcCcHHHHHHHHHHHHHhcccc------CceEEEeecCCchHHHHHHHhhcC
Q 009641 86 YALPIVQTLSNR-------AVRCLRALVVLPTRDLALQVKDVFAAIAPAV------GLSVGLAVGQSSIADEISELIKRP 152 (530)
Q Consensus 86 ~~~~~l~~l~~~-------~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~ 152 (530)
|.+|++-..... ...|+..||+||+|+||.|.++.+..++..+ .++..+..||.+..++..
T Consensus 224 FvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~------ 297 (610)
T KOG0341|consen 224 FVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLD------ 297 (610)
T ss_pred EeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHH------
Confidence 999976544432 2367899999999999999999988876554 356777888888777643
Q ss_pred ccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccc
Q 009641 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232 (530)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~ 232 (530)
.+..+.+|+|+||++|.+++.+ +..+++-.+++.+||||+|.+.+|.+.++.|+..+....
T Consensus 298 ---------------~v~~GvHivVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR--- 358 (610)
T KOG0341|consen 298 ---------------VVRRGVHIVVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR--- 358 (610)
T ss_pred ---------------HHhcCeeEEEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh---
Confidence 4557889999999999999987 677888899999999999999999999999999876432
Q ss_pred cccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEe
Q 009641 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 312 (530)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (530)
|+++||||++..++.++...+..|+.++++......-..+++..
T Consensus 359 -----------------------------------QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevE- 402 (610)
T KOG0341|consen 359 -----------------------------------QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVE- 402 (610)
T ss_pred -----------------------------------heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHH-
Confidence 89999999999999999999999999998876544434343333
Q ss_pred eccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEe
Q 009641 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (530)
Q Consensus 313 ~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT 392 (530)
....+.|..+|++-+++. ..++||||.....++.+.++|--.| ..+..+||+-.+++|...++.|+.|+-+|||||
T Consensus 403 yVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKG---VEavaIHGGKDQedR~~ai~afr~gkKDVLVAT 478 (610)
T KOG0341|consen 403 YVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKG---VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVAT 478 (610)
T ss_pred HHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHcc---ceeEEeecCcchhHHHHHHHHHhcCCCceEEEe
Confidence 234566777777766654 5799999999999999999998666 889999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 393 ~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
|+++.|+|+|++.+|||||+|..++.|+||+||+||.|++|.+.+|+++..
T Consensus 479 DVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 479 DVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred cchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999874
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-53 Score=430.94 Aligned_cols=387 Identities=29% Similarity=0.488 Sum_probs=332.6
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
-|+++.+|..+ +++..|++.++++||..|+|+|.+||++|+ .|+|+|..|.||||||++|++|++.+...
T Consensus 360 ~pkpv~sW~q~------gl~~~il~tlkkl~y~k~~~IQ~qAiP~Im----sGrdvIgvakTgSGKT~af~LPmirhi~d 429 (997)
T KOG0334|consen 360 CPKPVTSWTQC------GLSSKILETLKKLGYEKPTPIQAQAIPAIM----SGRDVIGVAKTGSGKTLAFLLPMIRHIKD 429 (997)
T ss_pred CCcccchHhhC------CchHHHHHHHHHhcCCCCcchhhhhcchhc----cCcceEEeeccCCccchhhhcchhhhhhc
Confidence 38889999999 499999999999999999999999988776 49999999999999999999999977765
Q ss_pred cC----CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC
Q 009641 97 RA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (530)
Q Consensus 97 ~~----~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (530)
.+ ..|+.+||++||++|+.|+.+++++|+..+++.+.+++|+.....+... +.++
T Consensus 430 Qr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiae---------------------lkRg 488 (997)
T KOG0334|consen 430 QRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAE---------------------LKRG 488 (997)
T ss_pred CCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHH---------------------HhcC
Confidence 42 2588999999999999999999999999999999999999998887654 4467
Q ss_pred CcEEEeCChHHHHHHhcCC--CCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhh
Q 009641 173 VDILVATPGRLMDHINATR--GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (530)
Q Consensus 173 ~~Ili~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (530)
+.|+|+||+++++.+.... ..++.++.++|+||||+|++.+|...+..|+..++
T Consensus 489 ~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr------------------------ 544 (997)
T KOG0334|consen 489 AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR------------------------ 544 (997)
T ss_pred CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc------------------------
Confidence 8999999999999876532 23567777999999999999999887777887764
Q ss_pred hccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeecc-CCCcHHHHHHHHHh
Q 009641 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQS 329 (530)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~ 329 (530)
|..|++++|||.+..+..++...++.|+.+.++... .....+.+...++. ...|+..|.++|..
T Consensus 545 --------------pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e 609 (997)
T KOG0334|consen 545 --------------PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGE 609 (997)
T ss_pred --------------hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHH
Confidence 334899999999999999999988999887777544 34455555555565 88999999999874
Q ss_pred -cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEE
Q 009641 330 -LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (530)
Q Consensus 330 -~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI 408 (530)
....++||||.+.+.|..+.+.|.+.+ +.+..+||+.++.+|..++++|++|.+++||+|+++++|+|+.++.+||
T Consensus 610 ~~e~~~tiiFv~~qe~~d~l~~~L~~ag---~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv 686 (997)
T KOG0334|consen 610 RYEDGKTIIFVDKQEKADALLRDLQKAG---YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV 686 (997)
T ss_pred HhhcCCEEEEEcCchHHHHHHHHHHhcC---cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE
Confidence 457899999999999999999999766 8888899999999999999999999999999999999999999999999
Q ss_pred EccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHHhhhHHHHHHHH
Q 009641 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480 (530)
Q Consensus 409 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (530)
|||+|..+++|+||.||+||.|+.|.+++|+.+++.....+|.+.+...+ .+.| ...+.+...+....
T Consensus 687 nyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~---~~~P-~~l~~l~~~f~~~~ 754 (997)
T KOG0334|consen 687 NYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK---QPVP-KLLQALSERFKAKQ 754 (997)
T ss_pred EcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhcc---CCCc-hHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999988888888888774333 3444 44455555554443
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3e-51 Score=432.55 Aligned_cols=353 Identities=20% Similarity=0.251 Sum_probs=267.6
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
.|++.+.++|+++||.+|+++|.+|++.++ .|+|+++.+|||||||++|++|+++.+... ++.++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHH
Confidence 389999999999999999999999988876 499999999999999999999999999764 45689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCC-
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG- 192 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~- 192 (530)
+.|+.+.++++. ..++++..+.|+++.... ..+..+++|+|+||+++...+.....
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r----------------------~~i~~~~~IivtTPd~L~~~~L~~~~~ 150 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPTEER----------------------RWAREHARYVLTNPDMLHRGILPSHAR 150 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCHHHH----------------------HHHhcCCCEEEEChHHHHHhhccchhH
Confidence 999999999987 447889999998874433 12335679999999999754332111
Q ss_pred --CCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeE
Q 009641 193 --FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (530)
Q Consensus 193 --~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (530)
..++++++||+||||.+.+ .|+..+..++..+..... ......|++
T Consensus 151 ~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~-------------------------------~~g~~~q~i 198 (742)
T TIGR03817 151 WARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCA-------------------------------RYGASPVFV 198 (742)
T ss_pred HHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHH-------------------------------hcCCCCEEE
Confidence 1267899999999999865 477777777665542110 001224899
Q ss_pred EEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeecc-----------------CCCcHHHHHHHHHhcCCC
Q 009641 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-----------------SKLKPLYLVALLQSLGEE 333 (530)
Q Consensus 271 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~k~~~l~~~l~~~~~~ 333 (530)
++|||.++... ........+..+...... +.....+..... ...+...+..+++. +.
T Consensus 199 ~~SATi~n~~~-~~~~l~g~~~~~i~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~ 272 (742)
T TIGR03817 199 LASATTADPAA-AASRLIGAPVVAVTEDGS---PRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GA 272 (742)
T ss_pred EEecCCCCHHH-HHHHHcCCCeEEECCCCC---CcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CC
Confidence 99999986654 444444555443221111 111111111111 01233344444443 67
Q ss_pred cEEEEcCChHHHHHHHHHHHhc-----CCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEE
Q 009641 334 KCIVFTSSVESTHRLCTLLNHF-----GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (530)
Q Consensus 334 ~~iVf~~s~~~~~~l~~~L~~~-----~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI 408 (530)
++||||+|++.|+.++..|... ...+.++..+||++++++|.+++++|++|+.++||||+++++|||+|++++||
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI 352 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVV 352 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE
Confidence 9999999999999999988753 11246788999999999999999999999999999999999999999999999
Q ss_pred EccCCCChhHHHHHHhhhhcCCCCccEEEEeec--chHHHHHHHHHH
Q 009641 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK--DEVKRFKKLLQK 453 (530)
Q Consensus 409 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~--~~~~~~~~~~~~ 453 (530)
+++.|.+..+|+||+||+||.|+.|.+++++.. .|...+....+.
T Consensus 353 ~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~ 399 (742)
T TIGR03817 353 IAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEAL 399 (742)
T ss_pred EeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHH
Confidence 999999999999999999999999999999874 354444544333
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-51 Score=376.99 Aligned_cols=359 Identities=26% Similarity=0.446 Sum_probs=319.8
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC
Q 009641 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (530)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~ 100 (530)
+++|++++ |++++++.+...||++|+.+|+.| +.++.+|.|+++++++|+|||.+|.+++++.+... .+
T Consensus 25 vdsfddm~------L~e~LLrgiy~yGFekPSaIQqra----I~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-~k 93 (397)
T KOG0327|consen 25 VDSFDDMN------LKESLLRGIYAYGFEKPSAIQQRA----ILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-VK 93 (397)
T ss_pred hhhhhhcC------CCHHHHhHHHhhccCCchHHHhcc----ccccccCCceeEeeeccccchhhhHHHHHhhcCcc-hH
Confidence 45788884 999999999999999999999998 34456799999999999999999999999887543 34
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
...+++++||++|+.|+.+....++...+.++....|+.....+...+ ....+.|+++||
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i--------------------~~~~~hivvGTp 153 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQAL--------------------LKDKPHIVVGTP 153 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhh--------------------hccCceeecCCc
Confidence 567999999999999999999999999999999999988766444332 234579999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (530)
+++...+... .+....+.++|+||||.+++.+|.+.+..++.+++.
T Consensus 154 grV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~--------------------------------- 199 (397)
T KOG0327|consen 154 GRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS--------------------------------- 199 (397)
T ss_pred hhHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHHHHcCc---------------------------------
Confidence 9999999874 677788999999999999999999999999998874
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcC
Q 009641 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (530)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~ 340 (530)
..|.+++|||.+.++..+.+.++.+|+.+........ ...+.+++.......|...|..+.+ .-...+||||
T Consensus 200 -----~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~n 271 (397)
T KOG0327|consen 200 -----DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCN 271 (397)
T ss_pred -----chhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHHHHH--hhhcceEEec
Confidence 3389999999999999999999999999877765533 4566777777777779999999988 5678999999
Q ss_pred ChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHH
Q 009641 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (530)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~ 420 (530)
+++.+..+...|...+ +.+..+||.|.+.+|..++..|+.|..+|||+|+.+++|+|+..+..||+|++|...++|+
T Consensus 272 t~r~v~~l~~~L~~~~---~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yi 348 (397)
T KOG0327|consen 272 TRRKVDNLTDKLRAHG---FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYI 348 (397)
T ss_pred chhhHHHHHHHHhhCC---ceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhh
Confidence 9999999999997666 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 421 Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
||+||+||.|++|.++.++...+...++++.+.+.
T Consensus 349 hR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~ 383 (397)
T KOG0327|consen 349 HRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYN 383 (397)
T ss_pred hhcccccccCCCceeeeeehHhhHHHHHhHHHhcC
Confidence 99999999999999999999999999999987764
No 34
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-51 Score=378.97 Aligned_cols=360 Identities=30% Similarity=0.427 Sum_probs=321.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCc
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~ 101 (530)
..|..+ +|+....+++.+-||++|+|+|++. ++.++.+++++..|-||||||.||++||++++......+
T Consensus 21 g~fqsm------gL~~~v~raI~kkg~~~ptpiqRKT----ipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g 90 (529)
T KOG0337|consen 21 GGFQSM------GLDYKVLRAIHKKGFNTPTPIQRKT----IPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTG 90 (529)
T ss_pred CCcccc------CCCHHHHHHHHHhhcCCCCchhccc----ccceeeccccceeeecCCcchhhHHHHHHHHHhhccccc
Confidence 456666 6999999999999999999999996 455566999999999999999999999999999887778
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~ 181 (530)
.++++++||++|+.|..+..++++.+.+++..+.+|+.+..++... +..++|||++||+
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~---------------------l~~npDii~ATpg 149 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFIL---------------------LNENPDIIIATPG 149 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHH---------------------hccCCCEEEecCc
Confidence 8999999999999999999999999999999999999888777544 4567899999999
Q ss_pred HHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCC
Q 009641 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (530)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (530)
+++.+.-. -.+.++.+.||||||||++.+++|.+.+..++..++..
T Consensus 150 r~~h~~ve-m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~--------------------------------- 195 (529)
T KOG0337|consen 150 RLLHLGVE-MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPES--------------------------------- 195 (529)
T ss_pred eeeeeehh-eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCc---------------------------------
Confidence 99877655 34678999999999999999999999999999887642
Q ss_pred CCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhc-CCCcEEEEcC
Q 009641 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTS 340 (530)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~iVf~~ 340 (530)
.|+++||||++..+-......+.+|..+..... ..+...++.....+...+|...|..++... .+.+++|||.
T Consensus 196 -----~QTllfSatlp~~lv~fakaGl~~p~lVRldve-tkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~ 269 (529)
T KOG0337|consen 196 -----RQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE-TKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVA 269 (529)
T ss_pred -----ceEEEEeccCchhhHHHHHccCCCCceEEeehh-hhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEec
Confidence 289999999999999999999999998885433 355566677777788889999999988754 4568999999
Q ss_pred ChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHH
Q 009641 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (530)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~ 420 (530)
+..+++.+...|...+ +.+..+.|.|.+..|...+.+|+.++..+||.|++++||+|+|..+.||+||.|.+...|+
T Consensus 270 tk~hve~~~~ll~~~g---~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFv 346 (529)
T KOG0337|consen 270 TKHHVEYVRGLLRDFG---GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFV 346 (529)
T ss_pred ccchHHHHHHHHHhcC---CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEE
Confidence 9999999999999877 7888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 421 Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
||+||+.|+|+.|.+|.++.++|..++.++...+.
T Consensus 347 hRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflg 381 (529)
T KOG0337|consen 347 HRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLG 381 (529)
T ss_pred EEecchhhccccceEEEEEecccchhhhhhhhhcC
Confidence 99999999999999999999999988888776654
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.1e-49 Score=414.90 Aligned_cols=346 Identities=21% Similarity=0.279 Sum_probs=260.8
Q ss_pred CCHHHHHHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 35 l~~~i~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
++..+...++. |||..|+|+|.++|+.++ .|+|+++.+|||+|||++|++|++.. +..+|||+|+++|
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSL 512 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSL 512 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHH
Confidence 66677777776 899999999999988876 49999999999999999999999853 2369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHH---HHhcC
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD---HINAT 190 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~---~l~~~ 190 (530)
+.++...+... ++++..+.++....++...+.. .......++|+|+||++|.. ++...
T Consensus 513 mqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~---------------l~s~~g~~~ILyvTPERL~~~d~ll~~L 573 (1195)
T PLN03137 513 IQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQE---------------LSSEYSKYKLLYVTPEKVAKSDSLLRHL 573 (1195)
T ss_pred HHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHH---------------HHhcCCCCCEEEEChHHhhcchHHHHHH
Confidence 98777666654 7888999998876665432211 00011457999999999853 12211
Q ss_pred CCC-CCCCccEEEEechhHhhhHh--hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCce
Q 009641 191 RGF-TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (530)
Q Consensus 191 ~~~-~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (530)
..+ ....+.+|||||||++.++| |...+..+-.... .++..
T Consensus 574 ~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~------------------------------------~fp~v 617 (1195)
T PLN03137 574 ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQ------------------------------------KFPNI 617 (1195)
T ss_pred HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHH------------------------------------hCCCC
Confidence 111 23458999999999998886 4444443211110 01233
Q ss_pred eeEEEeEeecCChhhhhh--hccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh-cCCCcEEEEcCChHH
Q 009641 268 VKMVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVES 344 (530)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~iVf~~s~~~ 344 (530)
+++++|||++..+..... +.+..+..+.....+.++ .+.+..........+..++.. ..+.++||||.+++.
T Consensus 618 PilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL-----~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke 692 (1195)
T PLN03137 618 PVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNL-----WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMD 692 (1195)
T ss_pred CeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccce-----EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhH
Confidence 688999999988766333 234455544443332221 222222222223455555553 335689999999999
Q ss_pred HHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHh
Q 009641 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424 (530)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~G 424 (530)
|+.+++.|...+ +.+..|||+|++.+|..+++.|..|+.+|||||+++++|||+|+|++||||++|.+++.|+||+|
T Consensus 693 ~E~LAe~L~~~G---ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriG 769 (1195)
T PLN03137 693 CEKVAERLQEFG---HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 769 (1195)
T ss_pred HHHHHHHHHHCC---CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhc
Confidence 999999999776 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCccEEEEeecchHHHHHHHHHHh
Q 009641 425 RTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (530)
Q Consensus 425 R~gR~g~~g~~i~~~~~~~~~~~~~~~~~~ 454 (530)
||||.|.+|.|++|++..|...++.++...
T Consensus 770 RAGRDG~~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 770 RAGRDGQRSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred ccCCCCCCceEEEEecHHHHHHHHHHHhcc
Confidence 999999999999999999988888887643
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-49 Score=404.97 Aligned_cols=333 Identities=23% Similarity=0.356 Sum_probs=253.7
Q ss_pred HCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.|||..|+|+|.+|++.++. |+|+++.+|||||||++|++|++.. +..+||++|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~~-------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALCS-------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHHc-------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 48999999999999888764 8899999999999999999998842 236999999999999999998865
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCChHHHHHHhcCCCC-CCCCccEEE
Q 009641 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGF-TLEHLCYLV 202 (530)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~l~~~~~~-~~~~~~~lV 202 (530)
++.+..+.++....+.... +..+ ...++|+++||+++.........+ ...++++||
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i------------------~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iV 132 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNV------------------LTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIA 132 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHH------------------HHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEE
Confidence 6778888777665433221 1122 244799999999975322100111 356799999
Q ss_pred EechhHhhhHh--hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCCh
Q 009641 203 VDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (530)
Q Consensus 203 iDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 280 (530)
|||||++.+++ |...+..+...... .+..+.+++|||+++.+
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~l~lTAT~~~~~ 176 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQK------------------------------------FPNVPIMALTATASPSV 176 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHH------------------------------------cCCCceEEEecCCCHHH
Confidence 99999998765 33443333221110 12337899999998765
Q ss_pred hhhhh--hccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH-hcCCCcEEEEcCChHHHHHHHHHHHhcCC
Q 009641 281 NKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGE 357 (530)
Q Consensus 281 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~iVf~~s~~~~~~l~~~L~~~~~ 357 (530)
..... ..+..+..+.......++ .+............+..++. ...+..+||||++++.++.+++.|...+
T Consensus 177 ~~di~~~l~l~~~~~~~~s~~r~nl-----~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g- 250 (470)
T TIGR00614 177 REDILRQLNLKNPQIFCTSFDRPNL-----YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG- 250 (470)
T ss_pred HHHHHHHcCCCCCcEEeCCCCCCCc-----EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-
Confidence 44322 234556555444332221 22222222234555666665 4455667999999999999999999766
Q ss_pred CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEE
Q 009641 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (530)
Q Consensus 358 ~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~ 437 (530)
+.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.+.+.|+||+||+||.|.+|.+++
T Consensus 251 --~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~ 328 (470)
T TIGR00614 251 --IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHL 328 (470)
T ss_pred --CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEE
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecchHHHHHHHHHHh
Q 009641 438 LLHKDEVKRFKKLLQKA 454 (530)
Q Consensus 438 ~~~~~~~~~~~~~~~~~ 454 (530)
|+++.|...++.++...
T Consensus 329 ~~~~~d~~~~~~~~~~~ 345 (470)
T TIGR00614 329 FYAPADINRLRRLLMEE 345 (470)
T ss_pred EechhHHHHHHHHHhcC
Confidence 99999998888887654
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.6e-50 Score=389.08 Aligned_cols=354 Identities=26% Similarity=0.437 Sum_probs=308.4
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC
Q 009641 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (530)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~ 100 (530)
...|+.+ .|...++..|+..+|..|+++|..||+.++ .+.|+||+|..|+|||++|.+.+++.+.... .
T Consensus 24 ~~~fe~l------~l~r~vl~glrrn~f~~ptkiQaaAIP~~~----~kmDliVQaKSGTGKTlVfsv~av~sl~~~~-~ 92 (980)
T KOG4284|consen 24 TPGFEQL------ALWREVLLGLRRNAFALPTKIQAAAIPAIF----SKMDLIVQAKSGTGKTLVFSVLAVESLDSRS-S 92 (980)
T ss_pred CCCHHHH------HHHHHHHHHHHhhcccCCCchhhhhhhhhh----cccceEEEecCCCCceEEEEeeeehhcCccc-C
Confidence 3457766 388899999999999999999999977655 4789999999999999999999998887643 5
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
.+..+|++|||+++.|+.+.++.+++.+ |+++.++.||+........+ +.++|+|+|
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl----------------------k~~rIvIGt 150 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL----------------------KQTRIVIGT 150 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh----------------------hhceEEecC
Confidence 6789999999999999999999999854 89999999999887775543 235799999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHhhh-HhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccC
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (530)
|+++.+++.. +.+++++++++|+||||.+++ ..|.+.+.-|+..++...
T Consensus 151 PGRi~qL~el-~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r----------------------------- 200 (980)
T KOG4284|consen 151 PGRIAQLVEL-GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR----------------------------- 200 (980)
T ss_pred chHHHHHHHh-cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh-----------------------------
Confidence 9999999987 788999999999999999988 678888999998877533
Q ss_pred CCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEe-eccCC-------CcHHHHHHHHHhc
Q 009641 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL-ICESK-------LKPLYLVALLQSL 330 (530)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~k~~~l~~~l~~~ 330 (530)
|++.+|||.+.++..+...++++|.++........+.. +.+|+. .+... .|...|-.++...
T Consensus 201 ---------Qv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~G-ikQyv~~~~s~nnsveemrlklq~L~~vf~~i 270 (980)
T KOG4284|consen 201 ---------QVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFG-IKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSI 270 (980)
T ss_pred ---------eeeEEeccCchhHHHHHHHHhcccceeecccCCceeec-hhheeeeccCCcchHHHHHHHHHHHHHHHhhC
Confidence 89999999999999999999999999988877655544 445544 34332 3677788888888
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEc
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~ 410 (530)
+-.+.||||+....|+-++..|...| +.+.++.|.|++.+|..+++.++.-.++|||+||+.+||||-+.+++|||.
T Consensus 271 py~QAlVF~~~~sra~~~a~~L~ssG---~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNi 347 (980)
T KOG4284|consen 271 PYVQALVFCDQISRAEPIATHLKSSG---LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNI 347 (980)
T ss_pred chHHHHhhhhhhhhhhHHHHHhhccC---CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEec
Confidence 88999999999999999999999776 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHhhhhcCCCCccEEEEeecchH-HHHHHH
Q 009641 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-KRFKKL 450 (530)
Q Consensus 411 ~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~-~~~~~~ 450 (530)
|+|.+.++|.||+|||||+|..|.+++|+...+. +.|..+
T Consensus 348 D~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 348 DAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred CCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 9999999999999999999999999999877643 444444
No 38
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-50 Score=385.80 Aligned_cols=384 Identities=28% Similarity=0.407 Sum_probs=313.2
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc
Q 009641 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (530)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~ 97 (530)
|..+.+|++++=+. ..++.+++.+...||..|+|.|.+|++..+ .+++++++||||||||++|.+|++..+...
T Consensus 128 ~~~l~~f~~lt~~~--~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl----~~r~~lAcapTGsgKtlaf~~Pil~~L~~~ 201 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDY--SMNKRLLENLQELGFDEPTPIQKQAIPVFL----EKRDVLACAPTGSGKTLAFNLPILQHLKDL 201 (593)
T ss_pred CCccccccccchhh--hhcHHHHHhHhhCCCCCCCcccchhhhhhh----cccceEEeccCCCcchhhhhhHHHHHHHHh
Confidence 55556677665333 478899999999999999999999977655 589999999999999999999999999876
Q ss_pred C----CCcccEEEEcCcHHHHHHHHHHHHHhc--cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 009641 98 A----VRCLRALVVLPTRDLALQVKDVFAAIA--PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (530)
Q Consensus 98 ~----~~~~~~lil~Pt~~L~~Q~~~~l~~~~--~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (530)
. ..|.+++|+.||++|+.|++.++.++. ...+..+.............. .....
T Consensus 202 ~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a--------------------~~~~~ 261 (593)
T KOG0344|consen 202 SQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPA--------------------FLSDE 261 (593)
T ss_pred hcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccc--------------------hhHHH
Confidence 5 567899999999999999999999997 444444444333322111110 01123
Q ss_pred CCcEEEeCChHHHHHHhcCC-CCCCCCccEEEEechhHhhhH-hhhhHHHHHHhhcccCcccccccccccccccccchhh
Q 009641 172 AVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (530)
Q Consensus 172 ~~~Ili~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (530)
.++|+|+||-++..++.... .++++.+.++|+||||.+.+. .|...+..|++...+
T Consensus 262 k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s---------------------- 319 (593)
T KOG0344|consen 262 KYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS---------------------- 319 (593)
T ss_pred HHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC----------------------
Confidence 46999999999999987632 357889999999999999998 888888888876544
Q ss_pred hhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh
Q 009641 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329 (530)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 329 (530)
+.+..-+||||.+..+++++.....++..+.++..........+..........|...+..++..
T Consensus 320 ---------------~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~ 384 (593)
T KOG0344|consen 320 ---------------PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVAS 384 (593)
T ss_pred ---------------cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhc
Confidence 23355689999999999999999999998888876554333333444444567889999999988
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEE
Q 009641 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (530)
Q Consensus 330 ~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~ 409 (530)
.-..+++||+.+.+.|..|...|..+ .++.+..+||..++.+|.+++++|+.|+++|||||++++||+|+.+++.||+
T Consensus 385 g~~PP~lIfVQs~eRak~L~~~L~~~--~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn 462 (593)
T KOG0344|consen 385 GFKPPVLIFVQSKERAKQLFEELEIY--DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN 462 (593)
T ss_pred cCCCCeEEEEecHHHHHHHHHHhhhc--cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe
Confidence 88899999999999999999999532 3488999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHH
Q 009641 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLI 469 (530)
Q Consensus 410 ~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (530)
||.|.+..+|+||+||+||+|+.|.+++|+++.|...++.+..-..... .++++..+
T Consensus 463 yD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG---~evpe~~m 519 (593)
T KOG0344|consen 463 YDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSG---CEVPEKIM 519 (593)
T ss_pred cCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcC---CcchHHHH
Confidence 9999999999999999999999999999999999998887777665444 45555443
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.4e-48 Score=403.17 Aligned_cols=341 Identities=23% Similarity=0.323 Sum_probs=260.3
Q ss_pred CCCHHHHHHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 34 CLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 34 ~l~~~i~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
.++....+.|++ +||..|+|+|.++++.++. |+|+++.+|||+|||++|++|++.. ...+||++|+++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~s 76 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLIS 76 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHH
Confidence 355666777776 7999999999999888764 8999999999999999999998843 236999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCChHHHHHHhcCC
Q 009641 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATR 191 (530)
Q Consensus 113 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~l~~~~ 191 (530)
|+.|+.+.++.+ ++.+..+.++......... +..+ ....+++++||+++...... .
T Consensus 77 L~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~------------------~~~~~~g~~~il~~tPe~l~~~~~~-~ 133 (607)
T PRK11057 77 LMKDQVDQLLAN----GVAAACLNSTQTREQQLEV------------------MAGCRTGQIKLLYIAPERLMMDNFL-E 133 (607)
T ss_pred HHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHH------------------HHHHhCCCCcEEEEChHHhcChHHH-H
Confidence 999999998875 6777777777655443221 1111 23478999999998632111 1
Q ss_pred CCCCCCccEEEEechhHhhhHh--hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceee
Q 009641 192 GFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (530)
Q Consensus 192 ~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (530)
.+...++++|||||||++.+++ |...+..+-..... .+..++
T Consensus 134 ~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~------------------------------------~p~~~~ 177 (607)
T PRK11057 134 HLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------------------FPTLPF 177 (607)
T ss_pred HHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh------------------------------------CCCCcE
Confidence 1233468999999999998765 33333322211100 123478
Q ss_pred EEEeEeecCChhhh--hhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHH
Q 009641 270 MVLSATLTQDPNKL--AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (530)
Q Consensus 270 i~~SaT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~ 347 (530)
+++|||++...... ....+.+|..........++ .+ .......+...+..++....+.++||||+|++.|+.
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl-----~~-~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~ 251 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI-----RY-TLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVED 251 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcc-----ee-eeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 99999998776542 22334556554433322211 11 122233455667777777778899999999999999
Q ss_pred HHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhh
Q 009641 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (530)
Q Consensus 348 l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~g 427 (530)
+++.|...+ +.+..+||+|++.+|.++++.|+.|+.+|||||+++++|||+|++++||+|++|.|.++|+||+||+|
T Consensus 252 la~~L~~~g---~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 252 TAARLQSRG---ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 328 (607)
T ss_pred HHHHHHhCC---CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhcc
Confidence 999999876 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeecchHHHHHHHHHH
Q 009641 428 RAGQLGRCFTLLHKDEVKRFKKLLQK 453 (530)
Q Consensus 428 R~g~~g~~i~~~~~~~~~~~~~~~~~ 453 (530)
|.|.+|.+++|+++.|...++.++..
T Consensus 329 R~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 329 RDGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred CCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999998877776643
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.2e-47 Score=398.41 Aligned_cols=335 Identities=20% Similarity=0.302 Sum_probs=257.8
Q ss_pred HHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH
Q 009641 41 VALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (530)
Q Consensus 41 ~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (530)
+.|++ |||.+|+|+|.++++.++. |+|+++.+|||+|||++|++|++.. +..++|++|+++|+.|+.+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal~~-------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPALLL-------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHHHc-------CCcEEEEcCCHHHHHHHHH
Confidence 34555 8999999999999888764 8999999999999999999998842 2368999999999999999
Q ss_pred HHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCcc
Q 009641 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (530)
Q Consensus 120 ~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~ 199 (530)
.++.+ ++.+..++++.+..+....+ ........+|+++||+++...... ..+...+++
T Consensus 72 ~l~~~----gi~~~~~~s~~~~~~~~~~~-----------------~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~ 129 (591)
T TIGR01389 72 QLRAA----GVAAAYLNSTLSAKEQQDIE-----------------KALVNGELKLLYVAPERLEQDYFL-NMLQRIPIA 129 (591)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHH-----------------HHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCC
Confidence 99875 67888888877655442211 112234579999999998642221 123355799
Q ss_pred EEEEechhHhhhHh--hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeec
Q 009641 200 YLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277 (530)
Q Consensus 200 ~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 277 (530)
+|||||||++.+++ |...+..+...... .+..+++++|||++
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~------------------------------------~~~~~vi~lTAT~~ 173 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAER------------------------------------FPQVPRIALTATAD 173 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHh------------------------------------CCCCCEEEEEeCCC
Confidence 99999999998765 33333333322111 12225889999998
Q ss_pred CChhhhhhhc--cCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhc
Q 009641 278 QDPNKLAQLD--LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355 (530)
Q Consensus 278 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~ 355 (530)
..+....... +..+..+.....+.. ..+.......+...+..++....+.++||||+|++.++.+++.|...
T Consensus 174 ~~~~~~i~~~l~~~~~~~~~~~~~r~n------l~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~ 247 (591)
T TIGR01389 174 AETRQDIRELLRLADANEFITSFDRPN------LRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ 247 (591)
T ss_pred HHHHHHHHHHcCCCCCCeEecCCCCCC------cEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC
Confidence 7766533332 334443332222211 12222234456677788887766789999999999999999999876
Q ss_pred CCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccE
Q 009641 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (530)
Q Consensus 356 ~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~ 435 (530)
+ +.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|++++||+|++|.|.++|+|++||+||.|..|.|
T Consensus 248 g---~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~ 324 (591)
T TIGR01389 248 G---ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEA 324 (591)
T ss_pred C---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceE
Confidence 5 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecchHHHHHHHHHH
Q 009641 436 FTLLHKDEVKRFKKLLQK 453 (530)
Q Consensus 436 i~~~~~~~~~~~~~~~~~ 453 (530)
++++++.|...++.++..
T Consensus 325 il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 325 ILLYSPADIALLKRRIEQ 342 (591)
T ss_pred EEecCHHHHHHHHHHHhc
Confidence 999999998887777654
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.9e-46 Score=398.50 Aligned_cols=346 Identities=20% Similarity=0.268 Sum_probs=249.8
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC-----CCcccEEEEc
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVL 108 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~-----~~~~~~lil~ 108 (530)
.|+|.+.+.+++ +|..|+|+|.+||+.+. .|+|+++.||||||||++|++|+++.+.... .++.++||++
T Consensus 17 ~l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIs 91 (876)
T PRK13767 17 LLRPYVREWFKE-KFGTFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVS 91 (876)
T ss_pred hcCHHHHHHHHH-ccCCCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEc
Confidence 488999999888 89999999999998865 4899999999999999999999999886521 2456899999
Q ss_pred CcHHHHHHHHHHHHH-------hc----ccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEE
Q 009641 109 PTRDLALQVKDVFAA-------IA----PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (530)
Q Consensus 109 Pt~~L~~Q~~~~l~~-------~~----~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 176 (530)
|+++|+.|+++.+.. ++ ... ++++.+.+|+++....... +...++|+
T Consensus 92 PtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~---------------------l~~~p~Il 150 (876)
T PRK13767 92 PLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM---------------------LKKPPHIL 150 (876)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH---------------------HhCCCCEE
Confidence 999999999886653 22 222 6788999999876655332 23567999
Q ss_pred EeCChHHHHHHhcCCC-CCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhcccc
Q 009641 177 VATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (530)
Q Consensus 177 i~Tp~~l~~~l~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (530)
|+||++|..++.+... ..+.++++|||||||.+.+..++..+...+..+....
T Consensus 151 VtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-------------------------- 204 (876)
T PRK13767 151 ITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA-------------------------- 204 (876)
T ss_pred EecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--------------------------
Confidence 9999999877765321 1477899999999999988777777776666544211
Q ss_pred ccCCCCCCCCceeeEEEeEeecCChhhhhhhcc-------CCce-EEecCCcc-ccCc--ccceeeEeeccCCCcHHHHH
Q 009641 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-------HHPL-FLTTGETR-YKLP--ERLESYKLICESKLKPLYLV 324 (530)
Q Consensus 256 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-------~~~~-~~~~~~~~-~~~~--~~~~~~~~~~~~~~k~~~l~ 324 (530)
.+..|.+++|||+.+ ...+..+.. ..+. .+...... .... ...... ...........+.
T Consensus 205 --------~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l-~~~~~~~~~~~l~ 274 (876)
T PRK13767 205 --------GGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDL-IHTPAEEISEALY 274 (876)
T ss_pred --------CCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccc-cccccchhHHHHH
Confidence 022378999999864 333332211 1111 11111100 0000 000000 0011111112222
Q ss_pred HHHHh--cCCCcEEEEcCChHHHHHHHHHHHhcCC---CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCC
Q 009641 325 ALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399 (530)
Q Consensus 325 ~~l~~--~~~~~~iVf~~s~~~~~~l~~~L~~~~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi 399 (530)
..+.. ...+++||||+|+..|+.++..|..... .+..+..+||+|++++|..+++.|++|+.+|||||+++++||
T Consensus 275 ~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GI 354 (876)
T PRK13767 275 ETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGI 354 (876)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcC
Confidence 32221 1357899999999999999999986321 235789999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhHHHHHHhhhhcC-CCCccEEEEeec
Q 009641 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHK 441 (530)
Q Consensus 400 Dip~~~~VI~~~~p~s~~~y~Qr~GR~gR~-g~~g~~i~~~~~ 441 (530)
|+|++++||+++.|.++.+|+||+||+||. |..+.++++...
T Consensus 355 Dip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 355 DIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred CCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999986 444555555443
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7e-46 Score=396.61 Aligned_cols=337 Identities=24% Similarity=0.310 Sum_probs=254.1
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
+|++.+.+++++.||.+|+|+|.+|++..+ ..++|++++||||||||++|.+|++..+.. +.++||++|+++|
T Consensus 7 ~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~P~raL 79 (737)
T PRK02362 7 PLPEGVIEFYEAEGIEELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIVPLRAL 79 (737)
T ss_pred CCCHHHHHHHHhCCCCcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEeChHHH
Confidence 399999999999999999999999987633 358999999999999999999999998863 4489999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCC
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~ 193 (530)
+.|+++.++++.+ .++++..++|+...... ....++|+|+||+++..++++ ...
T Consensus 80 a~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~------------------------~l~~~~IiV~Tpek~~~llr~-~~~ 133 (737)
T PRK02362 80 ASEKFEEFERFEE-LGVRVGISTGDYDSRDE------------------------WLGDNDIIVATSEKVDSLLRN-GAP 133 (737)
T ss_pred HHHHHHHHHHhhc-CCCEEEEEeCCcCcccc------------------------ccCCCCEEEECHHHHHHHHhc-Chh
Confidence 9999999998754 48899999998653321 113469999999999988876 334
Q ss_pred CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEe
Q 009641 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (530)
Q Consensus 194 ~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (530)
.+.++++||+||+|.+.+.+++..++.++..+.... +..|++++|
T Consensus 134 ~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~-----------------------------------~~~qii~lS 178 (737)
T PRK02362 134 WLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN-----------------------------------PDLQVVALS 178 (737)
T ss_pred hhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC-----------------------------------CCCcEEEEc
Confidence 578899999999999988888888888887664321 234899999
Q ss_pred EeecCChhhhhhhccCC-------ceEEecC---CccccCcccceeeEeeccC-CCcHHHHHHHHHhcCCCcEEEEcCCh
Q 009641 274 ATLTQDPNKLAQLDLHH-------PLFLTTG---ETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSV 342 (530)
Q Consensus 274 aT~~~~~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~iVf~~s~ 342 (530)
||+++ ...+..+.... |+.+... ........ ......... ......+...+. .++++||||+|+
T Consensus 179 ATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr 253 (737)
T PRK02362 179 ATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSR 253 (737)
T ss_pred ccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCH
Confidence 99964 33333332111 1110000 00000000 000000000 111222222222 568999999999
Q ss_pred HHHHHHHHHHHhcCC---------------------------------CcceEEEccccCCHHHHHHHHHHHhcCCccEE
Q 009641 343 ESTHRLCTLLNHFGE---------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389 (530)
Q Consensus 343 ~~~~~l~~~L~~~~~---------------------------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iL 389 (530)
+.|+.+++.|..... ...++..+||+|++.+|..+++.|++|.++||
T Consensus 254 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VL 333 (737)
T PRK02362 254 RNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVI 333 (737)
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 999999988864311 11378899999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEE----cc-----CCCChhHHHHHHhhhhcCCCC--ccEEEEeecch
Q 009641 390 VSSDAMTRGMDVEGVNNVVN----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE 443 (530)
Q Consensus 390 VaT~~~~~GiDip~~~~VI~----~~-----~p~s~~~y~Qr~GR~gR~g~~--g~~i~~~~~~~ 443 (530)
|||+++++|||+|..++||+ || .|.+..+|+||+|||||.|.+ |.+++++...+
T Consensus 334 vaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 334 SSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred EechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 99999999999999999987 66 578899999999999999876 89999987753
No 43
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.5e-45 Score=359.82 Aligned_cols=340 Identities=22% Similarity=0.323 Sum_probs=266.1
Q ss_pred HHHHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHH
Q 009641 39 LKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (530)
Q Consensus 39 i~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (530)
+...|++ |||..+++-|.++|..++. ++|+++.+|||+||++||.+|++-. .| -+|||+|..+|+.++
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPAll~------~G-~TLVVSPLiSLM~DQ 73 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPALLL------EG-LTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHHHhc------CC-CEEEECchHHHHHHH
Confidence 4455666 7999999999999888765 8999999999999999999998843 22 699999999999999
Q ss_pred HHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCChHHHHHHhcCCCCCCC
Q 009641 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLE 196 (530)
Q Consensus 118 ~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~Tp~~l~~~l~~~~~~~~~ 196 (530)
.+.++.. |+.+..+.+..+..+.. .++..+.. ..++++.+||+|.+---. ..+.-.
T Consensus 74 V~~l~~~----Gi~A~~lnS~l~~~e~~------------------~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~ 130 (590)
T COG0514 74 VDQLEAA----GIRAAYLNSTLSREERQ------------------QVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRL 130 (590)
T ss_pred HHHHHHc----CceeehhhcccCHHHHH------------------HHHHHHhcCceeEEEECchhhcChHHH-HHHHhC
Confidence 9999987 78888888877655553 23333333 489999999998542111 111234
Q ss_pred CccEEEEechhHhhhHh--hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 197 HLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 197 ~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
.+.++||||||++..|| |......+-..... ++.++.+++||
T Consensus 131 ~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~------------------------------------~~~~p~~AlTA 174 (590)
T COG0514 131 PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG------------------------------------LPNPPVLALTA 174 (590)
T ss_pred CCceEEechHHHHhhcCCccCHhHHHHHHHHhh------------------------------------CCCCCEEEEeC
Confidence 58999999999999986 66666665544322 13447899999
Q ss_pred eecCChhhhhh--hccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHH
Q 009641 275 TLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (530)
Q Consensus 275 T~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L 352 (530)
|.++.+..... +.+..+..+..+..++++...+.... ....+...+.. ......+..||||.|++.++.+++.|
T Consensus 175 TA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~---~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L 250 (590)
T COG0514 175 TATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKG---EPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWL 250 (590)
T ss_pred CCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcc---cHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHH
Confidence 99988776443 45666666666666555533332221 12222222222 12445677899999999999999999
Q ss_pred HhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCC
Q 009641 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (530)
Q Consensus 353 ~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~ 432 (530)
...+ +.+..|||+|+.++|..+.++|..++.+|+|||.++++|||.|++++|||||+|.|+++|.|.+|||||+|.+
T Consensus 251 ~~~g---~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~ 327 (590)
T COG0514 251 RKNG---ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLP 327 (590)
T ss_pred HHCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCc
Confidence 9875 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeecchHHHHHHHHHHhc
Q 009641 433 GRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 433 g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
..|++|+++.|....+.+++..+
T Consensus 328 a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 328 AEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred ceEEEeeccccHHHHHHHHHhhc
Confidence 99999999999888887777653
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-44 Score=384.83 Aligned_cols=335 Identities=21% Similarity=0.266 Sum_probs=250.5
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
++++.+.+.++++||.+|+|+|.+|++..+ ..|+|++++||||||||++|.+|++..+.. .+.++||++|+++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~---~~g~nvlv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~aL 80 (720)
T PRK00254 7 RVDERIKRVLKERGIEELYPPQAEALKSGV---LEGKNLVLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLKAL 80 (720)
T ss_pred CCCHHHHHHHHhCCCCCCCHHHHHHHHHHH---hCCCcEEEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChHHH
Confidence 399999999999999999999999987633 358999999999999999999999988765 24589999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCC
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~ 193 (530)
+.|+++.++.+. ..++++..++|+...... ....++|+|+||+++..++++ ...
T Consensus 81 a~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~------------------------~~~~~~IiV~Tpe~~~~ll~~-~~~ 134 (720)
T PRK00254 81 AEEKYREFKDWE-KLGLRVAMTTGDYDSTDE------------------------WLGKYDIIIATAEKFDSLLRH-GSS 134 (720)
T ss_pred HHHHHHHHHHHh-hcCCEEEEEeCCCCCchh------------------------hhccCCEEEEcHHHHHHHHhC-Cch
Confidence 999999998864 358999999998764322 114569999999999888876 345
Q ss_pred CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEe
Q 009641 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (530)
Q Consensus 194 ~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (530)
.++++++||+||+|.+.+.+++..++.++..+.. ..|++++|
T Consensus 135 ~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~--------------------------------------~~qiI~lS 176 (720)
T PRK00254 135 WIKDVKLVVADEIHLIGSYDRGATLEMILTHMLG--------------------------------------RAQILGLS 176 (720)
T ss_pred hhhcCCEEEEcCcCccCCccchHHHHHHHHhcCc--------------------------------------CCcEEEEE
Confidence 5789999999999999888888888888876532 23799999
Q ss_pred EeecCChhhhhhhccCCceEEecCCccccCccc-ceeeEeeccC--CCc-----HHHHHHHHHhcCCCcEEEEcCChHHH
Q 009641 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER-LESYKLICES--KLK-----PLYLVALLQSLGEEKCIVFTSSVEST 345 (530)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~k-----~~~l~~~l~~~~~~~~iVf~~s~~~~ 345 (530)
||+++ ...+..+..... . .......++... ..+....... ..+ ...+...++ .++++||||+|++.|
T Consensus 177 ATl~n-~~~la~wl~~~~-~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~ 251 (720)
T PRK00254 177 ATVGN-AEELAEWLNAEL-V-VSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSA 251 (720)
T ss_pred ccCCC-HHHHHHHhCCcc-c-cCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHH
Confidence 99974 455544332211 1 111111111000 0011111111 111 122333333 367999999999999
Q ss_pred HHHHHHHHhcC------------------------------CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEeccc
Q 009641 346 HRLCTLLNHFG------------------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (530)
Q Consensus 346 ~~l~~~L~~~~------------------------------~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~ 395 (530)
+.++..|.... ....++..+||+|++++|..+++.|++|..+|||||+++
T Consensus 252 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tL 331 (720)
T PRK00254 252 EKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTL 331 (720)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHH
Confidence 88877664210 012468999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEE-------ccCCC-ChhHHHHHHhhhhcCC--CCccEEEEeecch
Q 009641 396 TRGMDVEGVNNVVN-------YDKPA-YIKTYIHRAGRTARAG--QLGRCFTLLHKDE 443 (530)
Q Consensus 396 ~~GiDip~~~~VI~-------~~~p~-s~~~y~Qr~GR~gR~g--~~g~~i~~~~~~~ 443 (530)
++|||+|.+++||. ++.|. +..+|+||+|||||.| ..|.+++++..++
T Consensus 332 a~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 332 SAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred hhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999884 44433 4679999999999965 5599999998765
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.4e-44 Score=368.74 Aligned_cols=377 Identities=20% Similarity=0.299 Sum_probs=284.1
Q ss_pred CCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC----CCcccEEEEc
Q 009641 33 PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVL 108 (530)
Q Consensus 33 ~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~----~~~~~~lil~ 108 (530)
+.|+|.+.++++.. |.+|||.|.+||+.+. .|+|+|+.||||||||+++++|++..+.... ..+..+|||+
T Consensus 6 ~~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIs 80 (814)
T COG1201 6 NILDPRVREWFKRK-FTSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYIS 80 (814)
T ss_pred hhcCHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeC
Confidence 35899999999997 9999999999998876 4999999999999999999999999998862 3468899999
Q ss_pred CcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHh
Q 009641 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (530)
Q Consensus 109 Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~ 188 (530)
|.++|.+++...++..+..+|+++.+.+|+++..+.... ..+.|||+|+||+.|.-++.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~---------------------~~~PPdILiTTPEsL~lll~ 139 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKM---------------------LKNPPHILITTPESLAILLN 139 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhc---------------------cCCCCcEEEeChhHHHHHhc
Confidence 999999999999999999999999999999987666433 34568999999999988776
Q ss_pred cCCC-CCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCce
Q 009641 189 ATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (530)
Q Consensus 189 ~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (530)
..+. -.+.++++||+||.|.+.+...+..+..-+..+.... +++
T Consensus 140 ~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~-----------------------------------~~~ 184 (814)
T COG1201 140 SPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA-----------------------------------GDF 184 (814)
T ss_pred CHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC-----------------------------------ccc
Confidence 5321 2478899999999999988888777766666554321 134
Q ss_pred eeEEEeEeecCChhhhhhhccCC--c-eEEecCCccccCcccceeeE---e-eccCCCcHHHHHHHHHhcCCCcEEEEcC
Q 009641 268 VKMVLSATLTQDPNKLAQLDLHH--P-LFLTTGETRYKLPERLESYK---L-ICESKLKPLYLVALLQSLGEEKCIVFTS 340 (530)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~---~-~~~~~~k~~~l~~~l~~~~~~~~iVf~~ 340 (530)
|.|.+|||.. +.....++.... + .++........-...+.... . ..........+..++++ ...+|||+|
T Consensus 185 qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~N 261 (814)
T COG1201 185 QRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK--HRTTLIFTN 261 (814)
T ss_pred EEEeehhccC-CHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh--cCcEEEEEe
Confidence 8999999997 445545443332 2 33333222110000000000 0 00011233344444554 348999999
Q ss_pred ChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHH
Q 009641 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (530)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~ 420 (530)
|+..++.++..|.+.+. ..+..+||+++.++|..+.++|++|+.+.+|||+.++-|||+.+++.||+++.|.++..++
T Consensus 262 TR~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~l 339 (814)
T COG1201 262 TRSGAERLAFRLKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFL 339 (814)
T ss_pred ChHHHHHHHHHHHHhcC--CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHh
Confidence 99999999999998653 6888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhc-CCCCccEEEEeecc-hHHHHHHHHHHhcCCCCCCcCCChhHHhhhHHH
Q 009641 421 HRAGRTAR-AGQLGRCFTLLHKD-EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 475 (530)
Q Consensus 421 Qr~GR~gR-~g~~g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (530)
||+||+|+ .|....++++.... |.-....+.+.+.........++..-++.+.++
T Consensus 340 QRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ 396 (814)
T COG1201 340 QRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQ 396 (814)
T ss_pred HhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHH
Confidence 99999997 45557777777663 333334444444434444455555555544433
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.2e-43 Score=374.54 Aligned_cols=325 Identities=18% Similarity=0.203 Sum_probs=245.1
Q ss_pred HHHHHHHHCCCCccchhhHHHHHHhcCCCCCC--CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHH
Q 009641 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (530)
Q Consensus 38 ~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~ 115 (530)
........+|| +|||.|.+|++.+...+..+ +|.+++||||||||.+|+.+++..+..+ .+++|++||++||.
T Consensus 440 ~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g----~qvlvLvPT~~LA~ 514 (926)
T TIGR00580 440 WQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG----KQVAVLVPTTLLAQ 514 (926)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC----CeEEEEeCcHHHHH
Confidence 34444555899 69999999999988755443 6899999999999999999999888653 48999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCChHHHHHHhcCCCCC
Q 009641 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 116 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
|+++.+++++...++++..++|+.+..+... .+..+.. .++|+|+||..+ . +.+.
T Consensus 515 Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~------------------~~~~l~~g~~dIVIGTp~ll----~--~~v~ 570 (926)
T TIGR00580 515 QHFETFKERFANFPVTIELLSRFRSAKEQNE------------------ILKELASGKIDILIGTHKLL----Q--KDVK 570 (926)
T ss_pred HHHHHHHHHhccCCcEEEEEeccccHHHHHH------------------HHHHHHcCCceEEEchHHHh----h--CCCC
Confidence 9999999988888899999998876544422 1223333 589999999533 2 3466
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
+.++++|||||+|++.. .....+..++ +..+++++||
T Consensus 571 f~~L~llVIDEahrfgv-----~~~~~L~~~~--------------------------------------~~~~vL~~SA 607 (926)
T TIGR00580 571 FKDLGLLIIDEEQRFGV-----KQKEKLKELR--------------------------------------TSVDVLTLSA 607 (926)
T ss_pred cccCCEEEeecccccch-----hHHHHHHhcC--------------------------------------CCCCEEEEec
Confidence 88999999999998622 1222222221 1237899999
Q ss_pred eecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHH-HHH-hcCCCcEEEEcCChHHHHHHHHHH
Q 009641 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQ-SLGEEKCIVFTSSVESTHRLCTLL 352 (530)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~l~-~~~~~~~iVf~~s~~~~~~l~~~L 352 (530)
|+.+...........++..+...+.. ...+..+..... . ..+.. +++ -..+++++|||++++.++.+++.|
T Consensus 608 Tpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~--~--~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 608 TPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYD--P--ELVREAIRRELLRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred CCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecC--H--HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHH
Confidence 98766555554555666655443221 111222222111 1 11111 222 224679999999999999999999
Q ss_pred HhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC-ChhHHHHHHhhhhcCCC
Q 009641 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQ 431 (530)
Q Consensus 353 ~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~-s~~~y~Qr~GR~gR~g~ 431 (530)
.+.. .++++..+||+|++.+|.+++++|++|+.+|||||+++++|||+|++++||+++.|. +..+|.||+||+||.|+
T Consensus 681 ~~~~-p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~ 759 (926)
T TIGR00580 681 RELV-PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK 759 (926)
T ss_pred HHhC-CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC
Confidence 8752 247899999999999999999999999999999999999999999999999999875 56789999999999999
Q ss_pred CccEEEEeecc
Q 009641 432 LGRCFTLLHKD 442 (530)
Q Consensus 432 ~g~~i~~~~~~ 442 (530)
.|.|++++.+.
T Consensus 760 ~g~aill~~~~ 770 (926)
T TIGR00580 760 KAYAYLLYPHQ 770 (926)
T ss_pred CeEEEEEECCc
Confidence 99999998653
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-43 Score=372.28 Aligned_cols=344 Identities=20% Similarity=0.229 Sum_probs=249.3
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
+|++.+.+.+.+.||+ |+++|.+|++.+. .++|++++||||||||+++.+++++.+.. +.++||++|+++|
T Consensus 7 ~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~----~~k~v~i~P~raL 77 (674)
T PRK01172 7 GYDDEFLNLFTGNDFE-LYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA----GLKSIYIVPLRSL 77 (674)
T ss_pred CCCHHHHHHHhhCCCC-CCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh----CCcEEEEechHHH
Confidence 3999999999999995 9999999988763 58999999999999999999999988765 3479999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCC
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~ 193 (530)
|.|+++.++++. ..|.++...+|+....... ...++|+|+||+++..++.+. ..
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~------------------------~~~~dIiv~Tpek~~~l~~~~-~~ 131 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPDF------------------------IKRYDVVILTSEKADSLIHHD-PY 131 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChhh------------------------hccCCEEEECHHHHHHHHhCC-hh
Confidence 999999999864 3588888888876533221 134699999999998888763 34
Q ss_pred CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEe
Q 009641 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (530)
Q Consensus 194 ~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (530)
.+.++++||+||||.+.+.+++..++.++..+.... +..+++++|
T Consensus 132 ~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~-----------------------------------~~~riI~lS 176 (674)
T PRK01172 132 IINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN-----------------------------------PDARILALS 176 (674)
T ss_pred HHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC-----------------------------------cCCcEEEEe
Confidence 578899999999999988888888888876544211 234799999
Q ss_pred EeecCChhhhhhhccCCceEEecCCccccCccccee-eEeecc-CCCcHHHHHHHHHh--cCCCcEEEEcCChHHHHHHH
Q 009641 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICE-SKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLC 349 (530)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~k~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~ 349 (530)
||+++ ...+..+.....+ .......++...+.. .....+ .......+..++.. ..++++||||++++.|+.++
T Consensus 177 ATl~n-~~~la~wl~~~~~--~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a 253 (674)
T PRK01172 177 ATVSN-ANELAQWLNASLI--KSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYA 253 (674)
T ss_pred CccCC-HHHHHHHhCCCcc--CCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHH
Confidence 99964 4444443221111 111111111000000 000111 11111112333332 34679999999999999999
Q ss_pred HHHHhcCC----------------------CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEE
Q 009641 350 TLLNHFGE----------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (530)
Q Consensus 350 ~~L~~~~~----------------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~V 407 (530)
..|..... ...++..+||+|++.+|..+++.|++|..+|||||+++++|+|+|+. .|
T Consensus 254 ~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~V 332 (674)
T PRK01172 254 EMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LV 332 (674)
T ss_pred HHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EE
Confidence 98865311 11357889999999999999999999999999999999999999975 45
Q ss_pred EEccC---------CCChhHHHHHHhhhhcCCCC--ccEEEEeecch-HHHHHHHH
Q 009641 408 VNYDK---------PAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE-VKRFKKLL 451 (530)
Q Consensus 408 I~~~~---------p~s~~~y~Qr~GR~gR~g~~--g~~i~~~~~~~-~~~~~~~~ 451 (530)
|+.+. |.+..+|.||+|||||.|.+ |.+++++...+ ...+++++
T Consensus 333 II~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 333 IVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred EEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 55443 45788999999999999854 67888776543 44555554
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.9e-42 Score=362.27 Aligned_cols=325 Identities=18% Similarity=0.212 Sum_probs=239.1
Q ss_pred HHHHHHHHHCCCCccchhhHHHHHHhcCCCCCC--CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 37 ~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
..+.+....++| +||++|++|++.+...+..+ .+.+++||||||||++|++|++..+.. +.+++|++||++||
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA 323 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILA 323 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHH
Confidence 455666677999 79999999999988755433 589999999999999999999988754 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCChHHHHHHhcCCCC
Q 009641 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~Tp~~l~~~l~~~~~~ 193 (530)
.|+++.++++++..++++.+++|+.+..+.... +..+.. .++|+|+||+.+.. ..
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~------------------~~~l~~g~~~IvVgT~~ll~~------~v 379 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREI------------------LEAIASGEADIVIGTHALIQD------DV 379 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHH------------------HHHHhCCCCCEEEchHHHhcc------cc
Confidence 999999999998889999999999886555322 223333 58999999987732 34
Q ss_pred CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEe
Q 009641 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (530)
Q Consensus 194 ~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (530)
.+.++++||+||+|++....+ ..+.... ...+++++|
T Consensus 380 ~~~~l~lvVIDE~Hrfg~~qr-----~~l~~~~--------------------------------------~~~~iL~~S 416 (681)
T PRK10917 380 EFHNLGLVIIDEQHRFGVEQR-----LALREKG--------------------------------------ENPHVLVMT 416 (681)
T ss_pred hhcccceEEEechhhhhHHHH-----HHHHhcC--------------------------------------CCCCEEEEe
Confidence 577899999999998733221 1111100 112689999
Q ss_pred EeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH-h-cCCCcEEEEcCChH--------
Q 009641 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-S-LGEEKCIVFTSSVE-------- 343 (530)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~-~~~~~~iVf~~s~~-------- 343 (530)
||+.+....+......+...+..... -...+..... . ..+...+...+. . ..+.+++|||+.++
T Consensus 417 ATp~prtl~~~~~g~~~~s~i~~~p~---~r~~i~~~~~--~-~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~ 490 (681)
T PRK10917 417 ATPIPRTLAMTAYGDLDVSVIDELPP---GRKPITTVVI--P-DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQ 490 (681)
T ss_pred CCCCHHHHHHHHcCCCceEEEecCCC---CCCCcEEEEe--C-cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHH
Confidence 99865443333222222222221111 0111222222 1 222233333332 2 35679999999653
Q ss_pred HHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC-ChhHHHHH
Q 009641 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (530)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~-s~~~y~Qr 422 (530)
.+..+++.|.... .++++..+||+|++.+|.+++++|++|+.+|||||+++++|||+|++++||+++.|. ....|.||
T Consensus 491 ~~~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~ 569 (681)
T PRK10917 491 SAEETYEELQEAF-PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQL 569 (681)
T ss_pred HHHHHHHHHHHHC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHH
Confidence 4566777777642 126899999999999999999999999999999999999999999999999999997 46788899
Q ss_pred HhhhhcCCCCccEEEEee
Q 009641 423 AGRTARAGQLGRCFTLLH 440 (530)
Q Consensus 423 ~GR~gR~g~~g~~i~~~~ 440 (530)
+||+||.|..|.|++++.
T Consensus 570 ~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 570 RGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred hhcccCCCCceEEEEEEC
Confidence 999999999999999995
No 49
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-44 Score=308.23 Aligned_cols=312 Identities=26% Similarity=0.415 Sum_probs=270.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 29 ~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
|.++ -|.|++++++-..||+.|.++|.++|+..+ .|.|++.+|..|.|||.+|++..++++.-- .....++++|
T Consensus 44 frdf-llkpellraivdcgfehpsevqhecipqai----lgmdvlcqaksgmgktavfvl~tlqqiepv-~g~vsvlvmc 117 (387)
T KOG0329|consen 44 FRDF-LLKPELLRAIVDCGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQIEPV-DGQVSVLVMC 117 (387)
T ss_pred hhhh-hcCHHHHHHHHhccCCCchHhhhhhhhHHh----hcchhheecccCCCceeeeehhhhhhcCCC-CCeEEEEEEe
Confidence 4443 499999999999999999999999987765 489999999999999999999999988653 3456799999
Q ss_pred CcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHH
Q 009641 109 PTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (530)
Q Consensus 109 Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l 187 (530)
.||+||-|+.++..++.+.+ ++++.+++||.++.+.... +...|+|+|+||++++.+.
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~---------------------lk~~PhivVgTPGrilALv 176 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEEL---------------------LKNCPHIVVGTPGRILALV 176 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHH---------------------HhCCCeEEEcCcHHHHHHH
Confidence 99999999999999998887 6899999999988776543 3346799999999999999
Q ss_pred hcCCCCCCCCccEEEEechhHhhhH-hhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCc
Q 009641 188 NATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (530)
Q Consensus 188 ~~~~~~~~~~~~~lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (530)
++ +.+++++++.+|+||||.|+++ .+...++.+...++...
T Consensus 177 r~-k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~K------------------------------------- 218 (387)
T KOG0329|consen 177 RN-RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEK------------------------------------- 218 (387)
T ss_pred Hh-ccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccc-------------------------------------
Confidence 87 7789999999999999988764 67788888888776432
Q ss_pred eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHH
Q 009641 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (530)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~ 346 (530)
|.++||||+++++......++.+|..+.......-.-..+++++......+|...+..++....-.+++||+.++..
T Consensus 219 -QvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-- 295 (387)
T KOG0329|consen 219 -QVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-- 295 (387)
T ss_pred -eeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh--
Confidence 78999999999999999999999988877776666667788898888899999999999998888999999988643
Q ss_pred HHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhh
Q 009641 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (530)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~ 426 (530)
| + | +.+ +|||++++||+|+..++.|+|||+|.+..+|+||+|||
T Consensus 296 -----l-----------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rA 339 (387)
T KOG0329|consen 296 -----L-----------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 339 (387)
T ss_pred -----h-----------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhh
Confidence 0 0 2 112 89999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeecchH
Q 009641 427 ARAGQLGRCFTLLHKDEV 444 (530)
Q Consensus 427 gR~g~~g~~i~~~~~~~~ 444 (530)
||.|.+|.+++|++..+.
T Consensus 340 grfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 340 GRFGTKGLAITFVSDEND 357 (387)
T ss_pred hccccccceeehhcchhh
Confidence 999999999999987653
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=6.9e-42 Score=358.25 Aligned_cols=328 Identities=17% Similarity=0.219 Sum_probs=238.6
Q ss_pred HHHHHHHHHCCCCccchhhHHHHHHhcCCCCCC--CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 37 ~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
..+.+.++.++| +||+.|++|+++++..+... .+.+++||||||||.+|++|++..+.. +.+++|++||++||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA 297 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILA 297 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHH
Confidence 456677888999 89999999999988754333 468999999999999999999988764 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHHHhcCCCC
Q 009641 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGF 193 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~ 193 (530)
.|+++.++++++..++++.+++|+....+.... +..+. ..++|+|+||+.+.+ .+
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~------------------~~~i~~g~~~IiVgT~~ll~~------~~ 353 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKEL------------------LETIASGQIHLVVGTHALIQE------KV 353 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHHH------------------HHHHhCCCCCEEEecHHHHhc------cc
Confidence 999999999998889999999999876654322 22233 358999999987743 34
Q ss_pred CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEe
Q 009641 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (530)
Q Consensus 194 ~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (530)
.+.++++||+||+|++....+ ..+....... ...+.+++|
T Consensus 354 ~~~~l~lvVIDEaH~fg~~qr----~~l~~~~~~~------------------------------------~~~~~l~~S 393 (630)
T TIGR00643 354 EFKRLALVIIDEQHRFGVEQR----KKLREKGQGG------------------------------------FTPHVLVMS 393 (630)
T ss_pred cccccceEEEechhhccHHHH----HHHHHhcccC------------------------------------CCCCEEEEe
Confidence 567899999999998633221 1111111000 112689999
Q ss_pred EeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH-h-cCCCcEEEEcCCh--------H
Q 009641 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-S-LGEEKCIVFTSSV--------E 343 (530)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~-~~~~~~iVf~~s~--------~ 343 (530)
||+.+....+......+...+..... -...+..... ....+ ..+...+. . ..+.+++|||+.+ .
T Consensus 394 ATp~prtl~l~~~~~l~~~~i~~~p~---~r~~i~~~~~--~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~ 467 (630)
T TIGR00643 394 ATPIPRTLALTVYGDLDTSIIDELPP---GRKPITTVLI--KHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLK 467 (630)
T ss_pred CCCCcHHHHHHhcCCcceeeeccCCC---CCCceEEEEe--CcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHH
Confidence 99865433322211111111111000 0111222221 12222 33344333 2 2467899999876 4
Q ss_pred HHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC-ChhHHHHH
Q 009641 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (530)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~-s~~~y~Qr 422 (530)
.++.+++.|.... .++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||+|++++||+++.|. +...|.||
T Consensus 468 ~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~ 546 (630)
T TIGR00643 468 AAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQL 546 (630)
T ss_pred HHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHH
Confidence 5667777776542 347899999999999999999999999999999999999999999999999999987 57788999
Q ss_pred HhhhhcCCCCccEEEEee
Q 009641 423 AGRTARAGQLGRCFTLLH 440 (530)
Q Consensus 423 ~GR~gR~g~~g~~i~~~~ 440 (530)
+||+||.|+.|.|++++.
T Consensus 547 ~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 547 RGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred hhhcccCCCCcEEEEEEC
Confidence 999999999999999993
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.9e-42 Score=354.89 Aligned_cols=328 Identities=21% Similarity=0.217 Sum_probs=234.7
Q ss_pred HHHHH-CCCCccchhhHHHHHHhcCCCCCCC-cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEE-EcCcHHHHHHH
Q 009641 41 VALQN-MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV-VLPTRDLALQV 117 (530)
Q Consensus 41 ~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~-~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~li-l~Pt~~L~~Q~ 117 (530)
+.+.+ .||+ |+|||.++++.++ .|+ ++++.+|||||||.++.++++.. ..+ ...++.|| ++|||+|+.|+
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~-~~~-~~~~~rLv~~vPtReLa~Qi 78 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAV-EIG-AKVPRRLVYVVNRRTVVDQV 78 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccc-ccc-ccccceEEEeCchHHHHHHH
Confidence 34444 6996 9999999988876 476 68889999999999766555532 222 23344554 77999999999
Q ss_pred HHHHHHhcccc-----------------------CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCc
Q 009641 118 KDVFAAIAPAV-----------------------GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (530)
Q Consensus 118 ~~~l~~~~~~~-----------------------~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (530)
++.++++++.+ ++++..++||.+...+.. .+..+++
T Consensus 79 ~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~---------------------~l~~~p~ 137 (844)
T TIGR02621 79 TEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWM---------------------LDPHRPA 137 (844)
T ss_pred HHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHH---------------------hcCCCCc
Confidence 99999988754 478899999988776643 4456789
Q ss_pred EEEeCChHHHHHHh-cC-------CCC---CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCccccccccccccccc
Q 009641 175 ILVATPGRLMDHIN-AT-------RGF---TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243 (530)
Q Consensus 175 Ili~Tp~~l~~~l~-~~-------~~~---~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 243 (530)
|+|+|++.+.+-.- +. ..+ .+++++++|+|||| ++.+|...+..|+..+.....
T Consensus 138 IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~------------- 202 (844)
T TIGR02621 138 VIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD------------- 202 (844)
T ss_pred EEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc-------------
Confidence 99999655532111 00 000 26789999999999 578899999999886421000
Q ss_pred ccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHH
Q 009641 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323 (530)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 323 (530)
....|+++||||++.++.........++..+........ ...+.++. ......|...+
T Consensus 203 --------------------~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~-a~ki~q~v-~v~~e~Kl~~l 260 (844)
T TIGR02621 203 --------------------FLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLA-AKKIVKLV-PPSDEKFLSTM 260 (844)
T ss_pred --------------------cccceEEEEecCCCccHHHHHHHHccCCceeeccccccc-ccceEEEE-ecChHHHHHHH
Confidence 011389999999998877776666656655544332222 22333332 22333344333
Q ss_pred HHHH---HhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHH-----HHHHHHhc----CC------
Q 009641 324 VALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-----KTLKAFRE----GK------ 385 (530)
Q Consensus 324 ~~~l---~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~-----~~~~~f~~----g~------ 385 (530)
...+ ....++++||||||++.|+.+++.|.+.+ + ..+||+|++.+|. .++++|++ |.
T Consensus 261 v~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~ 335 (844)
T TIGR02621 261 VKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK---F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQ 335 (844)
T ss_pred HHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC---C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccc
Confidence 3222 12346789999999999999999998754 3 7899999999999 78999987 44
Q ss_pred -ccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCc-cEEEEeec
Q 009641 386 -IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG-RCFTLLHK 441 (530)
Q Consensus 386 -~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g-~~i~~~~~ 441 (530)
..|||||+++++||||+. ++||++..| .++|+||+||+||.|+.| ..++++..
T Consensus 336 g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 336 GTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 689999999999999986 888887776 689999999999999864 44566544
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.3e-41 Score=369.34 Aligned_cols=346 Identities=19% Similarity=0.252 Sum_probs=237.2
Q ss_pred EECCCCchHHHHHHHHHHHHhhhcC---------CCcccEEEEcCcHHHHHHHHHHHHHhc------------cccCceE
Q 009641 74 INSPTGSGKTLSYALPIVQTLSNRA---------VRCLRALVVLPTRDLALQVKDVFAAIA------------PAVGLSV 132 (530)
Q Consensus 74 i~apTGsGKT~~~~~~~l~~l~~~~---------~~~~~~lil~Pt~~L~~Q~~~~l~~~~------------~~~~~~v 132 (530)
|+||||||||++|++|+++.+.... .++.++|||+|+++|+.|+.+.++..+ ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987532 235789999999999999999887522 1247899
Q ss_pred EEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhH
Q 009641 133 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (530)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~ 212 (530)
...+|+++..++... +...++|+|+||++|..++.+.....++++++|||||+|.+.+.
T Consensus 81 ~vrtGDt~~~eR~rl---------------------l~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 81 GIRTGDTPAQERSKL---------------------TRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS 139 (1490)
T ss_pred EEEECCCCHHHHHHH---------------------hcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc
Confidence 999999987766432 23567999999999998876533346889999999999999887
Q ss_pred hhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhcc-CCc
Q 009641 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-HHP 291 (530)
Q Consensus 213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-~~~ 291 (530)
.++.++...+..+..... ...|.|++|||+.+ ...+..+.. ..+
T Consensus 140 kRG~~Lel~LeRL~~l~~----------------------------------~~~QrIgLSATI~n-~eevA~~L~g~~p 184 (1490)
T PRK09751 140 KRGAHLALSLERLDALLH----------------------------------TSAQRIGLSATVRS-ASDVAAFLGGDRP 184 (1490)
T ss_pred ccccHHHHHHHHHHHhCC----------------------------------CCCeEEEEEeeCCC-HHHHHHHhcCCCC
Confidence 777777766665543110 23489999999975 455554332 234
Q ss_pred eEEecCCccccCcccceeeEeeccCC--------------------Cc-HHHHHHHHHh-cCCCcEEEEcCChHHHHHHH
Q 009641 292 LFLTTGETRYKLPERLESYKLICESK--------------------LK-PLYLVALLQS-LGEEKCIVFTSSVESTHRLC 349 (530)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~k-~~~l~~~l~~-~~~~~~iVf~~s~~~~~~l~ 349 (530)
..+......... .+..+ ...... .. ......++.. ....++||||||+..|+.++
T Consensus 185 v~Iv~~~~~r~~--~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La 261 (1490)
T PRK09751 185 VTVVNPPAMRHP--QIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLT 261 (1490)
T ss_pred EEEECCCCCccc--ceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHH
Confidence 433221111111 11111 111000 00 0111122322 24678999999999999999
Q ss_pred HHHHhcCC------------------------------CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCC
Q 009641 350 TLLNHFGE------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399 (530)
Q Consensus 350 ~~L~~~~~------------------------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi 399 (530)
..|++... ..+.+..|||+|++++|..+++.|++|+.++||||+++++||
T Consensus 262 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGI 341 (1490)
T PRK09751 262 ARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGI 341 (1490)
T ss_pred HHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccC
Confidence 99976421 012367899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhHHHHHHhhhhcC-CCCccEEEEeecc-hHHHHHHHHHHhcCCCCCCcCCChhHHhhhHHHHH
Q 009641 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKD-EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477 (530)
Q Consensus 400 Dip~~~~VI~~~~p~s~~~y~Qr~GR~gR~-g~~g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (530)
|++++++||+++.|.++.+|+||+||+||. |..+.++++.... |.-...-+.+.+.....+....+....+.+.++.-
T Consensus 342 DIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiv 421 (1490)
T PRK09751 342 DMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTV 421 (1490)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHH
Confidence 999999999999999999999999999996 2234445333322 21111112333333444445555555555555544
Q ss_pred H
Q 009641 478 S 478 (530)
Q Consensus 478 ~ 478 (530)
.
T Consensus 422 a 422 (1490)
T PRK09751 422 A 422 (1490)
T ss_pred H
Confidence 3
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.8e-41 Score=367.30 Aligned_cols=328 Identities=17% Similarity=0.187 Sum_probs=246.7
Q ss_pred CHHHHHHHHHCCCCccchhhHHHHHHhcCCCCC--CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 36 ~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~--~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
+.+..+....++| .||+.|.+|++.++..+.. .+|++++||||+|||.+++.+++..+. .+.+++||+||++|
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----~g~qvlvLvPT~eL 661 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----NHKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----cCCeEEEEeCcHHH
Confidence 4566777788999 8999999999998875433 279999999999999999888877654 34589999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHHHhcCCC
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG 192 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~ 192 (530)
|.|+++.+++.+...++++.+++|+.+..++... +..+. ..++|+|+||+.+ . ..
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~i------------------l~~l~~g~~dIVVgTp~lL----~--~~ 717 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQI------------------LAEAAEGKIDILIGTHKLL----Q--SD 717 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHH------------------HHHHHhCCCCEEEECHHHH----h--CC
Confidence 9999999998777778889889888876655332 22222 3589999999744 2 23
Q ss_pred CCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 009641 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (530)
Q Consensus 193 ~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (530)
+.+.++++|||||+|++. +. ....+..++ +..+++++
T Consensus 718 v~~~~L~lLVIDEahrfG---~~--~~e~lk~l~--------------------------------------~~~qvLl~ 754 (1147)
T PRK10689 718 VKWKDLGLLIVDEEHRFG---VR--HKERIKAMR--------------------------------------ADVDILTL 754 (1147)
T ss_pred CCHhhCCEEEEechhhcc---hh--HHHHHHhcC--------------------------------------CCCcEEEE
Confidence 557789999999999972 11 122222221 23379999
Q ss_pred eEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh-cCCCcEEEEcCChHHHHHHHHH
Q 009641 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTL 351 (530)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~iVf~~s~~~~~~l~~~ 351 (530)
|||+.+....+....+.++..+....... ..+..+...... ......++.. ..+++++|||++++.++.+++.
T Consensus 755 SATpiprtl~l~~~gl~d~~~I~~~p~~r---~~v~~~~~~~~~---~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~ 828 (1147)
T PRK10689 755 TATPIPRTLNMAMSGMRDLSIIATPPARR---LAVKTFVREYDS---LVVREAILREILRGGQVYYLYNDVENIQKAAER 828 (1147)
T ss_pred cCCCCHHHHHHHHhhCCCcEEEecCCCCC---CCceEEEEecCc---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHH
Confidence 99998777666666777777765543221 122333222211 1111122221 2467999999999999999999
Q ss_pred HHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC-CChhHHHHHHhhhhcCC
Q 009641 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAG 430 (530)
Q Consensus 352 L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p-~s~~~y~Qr~GR~gR~g 430 (530)
|.+.. .+.++..+||+|++.+|.+++.+|++|+.+|||||+++++|||+|++++||..+.. .+...|+||+||+||.|
T Consensus 829 L~~~~-p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g 907 (1147)
T PRK10689 829 LAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 (1147)
T ss_pred HHHhC-CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCC
Confidence 98752 23688899999999999999999999999999999999999999999999955443 24568999999999999
Q ss_pred CCccEEEEeecc
Q 009641 431 QLGRCFTLLHKD 442 (530)
Q Consensus 431 ~~g~~i~~~~~~ 442 (530)
+.|.|++++.+.
T Consensus 908 ~~g~a~ll~~~~ 919 (1147)
T PRK10689 908 HQAYAWLLTPHP 919 (1147)
T ss_pred CceEEEEEeCCC
Confidence 999999988643
No 54
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7e-40 Score=310.44 Aligned_cols=335 Identities=20% Similarity=0.238 Sum_probs=239.7
Q ss_pred CCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
+.-+++.||.......+ .+|+|+..|||.|||+++++.+...+... ++ ++|+++||+.|+.|+++.+++...
T Consensus 12 ~~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWF--GG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhc--CC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 44589999998765554 46999999999999999999888888774 34 899999999999999999999876
Q ss_pred ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEech
Q 009641 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (530)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 206 (530)
-..-.+..++|.....+.... +...+|+|+||+.+.+.+.. +.+++.++.++|||||
T Consensus 84 ip~~~i~~ltGev~p~~R~~~----------------------w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEA 140 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREEL----------------------WAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEA 140 (542)
T ss_pred CChhheeeecCCCChHHHHHH----------------------HhhCCEEEeccHHHHhHHhc-CccChHHceEEEechh
Confidence 555678889998887765332 34569999999999999987 6789999999999999
Q ss_pred hHhhhHh-hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhh
Q 009641 207 DRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (530)
Q Consensus 207 h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 285 (530)
|+-.... |-......+..- ....++.+||||..+.+.+..
T Consensus 141 HRAvGnyAYv~Va~~y~~~~---------------------------------------k~~~ilgLTASPGs~~ekI~e 181 (542)
T COG1111 141 HRAVGNYAYVFVAKEYLRSA---------------------------------------KNPLILGLTASPGSDLEKIQE 181 (542)
T ss_pred hhccCcchHHHHHHHHHHhc---------------------------------------cCceEEEEecCCCCCHHHHHH
Confidence 9964332 222222222211 112578889988877433222
Q ss_pred h---ccCCceEEecCCcc-----------------------------------------------ccC------------
Q 009641 286 L---DLHHPLFLTTGETR-----------------------------------------------YKL------------ 303 (530)
Q Consensus 286 ~---~~~~~~~~~~~~~~-----------------------------------------------~~~------------ 303 (530)
. ..-+.+.+.+..+. ...
T Consensus 182 V~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~ 261 (542)
T COG1111 182 VVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQ 261 (542)
T ss_pred HHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHH
Confidence 0 00011111000000 000
Q ss_pred ---------cccc---------------------------------------------------------------eeeE
Q 009641 304 ---------PERL---------------------------------------------------------------ESYK 311 (530)
Q Consensus 304 ---------~~~~---------------------------------------------------------------~~~~ 311 (530)
.... ....
T Consensus 262 ~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~ 341 (542)
T COG1111 262 IRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRAD 341 (542)
T ss_pred HHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhc
Confidence 0000 0000
Q ss_pred eeccCCCcHHHHHHHHH----hcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEE-------ccccCCHHHHHHHHHH
Q 009641 312 LICESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE-------YSGLQRQSVRSKTLKA 380 (530)
Q Consensus 312 ~~~~~~~k~~~l~~~l~----~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~-------~h~~~~~~~R~~~~~~ 380 (530)
-....+.|...+.++++ ..++.++|||++.+++|+.+...|.+.+..- .+.. ...||+++++.+++++
T Consensus 342 ~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~-~~rFiGQa~r~~~~GMsQkeQ~eiI~~ 420 (542)
T COG1111 342 ESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKA-RVRFIGQASREGDKGMSQKEQKEIIDQ 420 (542)
T ss_pred cccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcc-eeEEeeccccccccccCHHHHHHHHHH
Confidence 00113345555555443 2345799999999999999999999876321 1111 1247999999999999
Q ss_pred HhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecc--hHHHHHHHHHH
Q 009641 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD--EVKRFKKLLQK 453 (530)
Q Consensus 381 f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~--~~~~~~~~~~~ 453 (530)
|+.|+++|||||++.++|+|+|+++.||+|++..|+..++||.||+||. +.|.+++++..+ |..++..-.++
T Consensus 421 Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrdeayy~~s~rk 494 (542)
T COG1111 421 FRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDEAYYYSSRRK 494 (542)
T ss_pred HhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 899999999988 44444443333
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8e-40 Score=356.74 Aligned_cols=316 Identities=21% Similarity=0.330 Sum_probs=222.2
Q ss_pred HHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH
Q 009641 41 VALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (530)
Q Consensus 41 ~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (530)
+.+++ +|+ .|+++|+.+++.++ .|+|++++||||||||. |.+++...+.. ++.+++||+||++|+.|+++
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~-f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLL----LGESFAIIAPTGVGKTT-FGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeccHHHHHHHHH
Confidence 34433 588 89999999887765 58999999999999996 55666555543 35689999999999999999
Q ss_pred HHHHhccccCceEEEeecCCch-HHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHHHhcCCCCCCCC
Q 009641 120 VFAAIAPAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEH 197 (530)
Q Consensus 120 ~l~~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~ 197 (530)
.++.++...++.+....|+... ..+.. +....+. ..++|+|+||++|.+++.. +....
T Consensus 142 ~l~~l~~~~~~~~~~~~g~~~~~~~ek~-----------------~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~ 201 (1176)
T PRK09401 142 KLEKFGEKVGCGVKILYYHSSLKKKEKE-----------------EFLERLKEGDFDILVTTSQFLSKNFDE---LPKKK 201 (1176)
T ss_pred HHHHHhhhcCceEEEEEccCCcchhHHH-----------------HHHHHHhcCCCCEEEECHHHHHHHHHh---ccccc
Confidence 9999998888888877776543 11111 1112223 4589999999999988763 44566
Q ss_pred ccEEEEechhHhhh-----------Hhhh-hHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCC
Q 009641 198 LCYLVVDETDRLLR-----------EAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (530)
Q Consensus 198 ~~~lViDEah~~~~-----------~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (530)
+++||+||||++++ .||. +.+..++..++..... ...+..+..+.. .+......
T Consensus 202 ~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~---------~~~~~~i~~l~~-----~i~~~~~~ 267 (1176)
T PRK09401 202 FDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY---------EEIYEKIRELEE-----KIAELKDK 267 (1176)
T ss_pred cCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc---------chhhhHHHHHHH-----hhhhcccC
Confidence 99999999999986 4563 5677777776542110 000000011110 00000011
Q ss_pred ceeeEEEeEeecCC-hhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHH
Q 009641 266 RLVKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344 (530)
Q Consensus 266 ~~~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~ 344 (530)
..|.+++|||.++. +.. ..+.++..+.++..... ...+.+.+..+. .+...+..+++... .++||||+++..
T Consensus 268 ~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~-~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~ 340 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFY-LRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKG 340 (1176)
T ss_pred CceEEEEeCCCCccchHH---HHhhccceEEecCcccc-cCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccC
Confidence 34899999999764 322 12233333444333222 234455554443 57777888887654 689999999877
Q ss_pred ---HHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEE----ecccccCCCCCC-CCEEEEccCCC
Q 009641 345 ---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA 414 (530)
Q Consensus 345 ---~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiDip~-~~~VI~~~~p~ 414 (530)
++.+++.|...+ +++..+||+| .+.+++|++|+.+|||| |++++||||+|+ +++|||||+|.
T Consensus 341 ~~~ae~l~~~L~~~g---i~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 341 KEYAEELAEYLEDLG---INAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred hHHHHHHHHHHHHCC---CcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 999999999876 8999999999 23459999999999999 689999999999 89999999996
No 56
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.2e-40 Score=312.02 Aligned_cols=346 Identities=25% Similarity=0.277 Sum_probs=271.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccE
Q 009641 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104 (530)
Q Consensus 25 ~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~ 104 (530)
+.++++.+ ++++.+.+.|+..|++++.|+|..|+. ..++.|.|.++.++|+||||++.-++=+.++.. .+.+.
T Consensus 192 ~r~~vdeL-dipe~fk~~lk~~G~~eLlPVQ~laVe---~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---~g~Km 264 (830)
T COG1202 192 ERVPVDEL-DIPEKFKRMLKREGIEELLPVQVLAVE---AGLLEGENLLVVSATASGKTLIGELAGIPRLLS---GGKKM 264 (830)
T ss_pred cccccccc-CCcHHHHHHHHhcCcceecchhhhhhh---hccccCCceEEEeccCCCcchHHHhhCcHHHHh---CCCeE
Confidence 34556666 499999999999999999999999854 456789999999999999999988887777776 35589
Q ss_pred EEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHH
Q 009641 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184 (530)
Q Consensus 105 lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~ 184 (530)
|+++|..+||+|-++.+++....+++.+..-+|-..+.....- +.......+||+|+|++-+-
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~p-----------------v~~~t~~dADIIVGTYEGiD 327 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP-----------------VVVDTSPDADIIVGTYEGID 327 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCc-----------------cccCCCCCCcEEEeechhHH
Confidence 9999999999999999999888889999888886543322100 00112345799999999998
Q ss_pred HHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCC
Q 009641 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (530)
Q Consensus 185 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (530)
.+++.. ..+.++..|||||+|.+-+...+.-+..++..++...
T Consensus 328 ~lLRtg--~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~----------------------------------- 370 (830)
T COG1202 328 YLLRTG--KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF----------------------------------- 370 (830)
T ss_pred HHHHcC--CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC-----------------------------------
Confidence 888763 5688999999999999988788877877777765432
Q ss_pred CceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccce-eeEeeccCCCcHHHHHHHHHhc--------CCCcE
Q 009641 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE-SYKLICESKLKPLYLVALLQSL--------GEEKC 335 (530)
Q Consensus 265 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~--------~~~~~ 335 (530)
|.-|+|.+|||.. +...++...-...+..+-.+ -.++ |.....+..+|...+..+.+.. -.+++
T Consensus 371 ~~AQ~i~LSATVg-Np~elA~~l~a~lV~y~~RP------VplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQt 443 (830)
T COG1202 371 PGAQFIYLSATVG-NPEELAKKLGAKLVLYDERP------VPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQT 443 (830)
T ss_pred CCCeEEEEEeecC-ChHHHHHHhCCeeEeecCCC------CChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCce
Confidence 3349999999985 55566655544444443222 2233 3334444677887777766532 24799
Q ss_pred EEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC---
Q 009641 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK--- 412 (530)
Q Consensus 336 iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~--- 412 (530)
|||++|+..|+.++..|...| +++..||++|+..+|..+...|.+++..++|+|.+++.|+|+|. +.||+-.+
T Consensus 444 IVFT~SRrr~h~lA~~L~~kG---~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPA-SQVIFEsLaMG 519 (830)
T COG1202 444 IVFTYSRRRCHELADALTGKG---LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPA-SQVIFESLAMG 519 (830)
T ss_pred EEEecchhhHHHHHHHhhcCC---cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCch-HHHHHHHHHcc
Confidence 999999999999999999776 89999999999999999999999999999999999999999995 55665222
Q ss_pred --CCChhHHHHHHhhhhcCCCC--ccEEEEeecc
Q 009641 413 --PAYIKTYIHRAGRTARAGQL--GRCFTLLHKD 442 (530)
Q Consensus 413 --p~s~~~y~Qr~GR~gR~g~~--g~~i~~~~~~ 442 (530)
.-|+.+|.||.|||||.+-+ |++++++.+.
T Consensus 520 ~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 520 IEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 24799999999999997755 8888888765
No 57
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=332.39 Aligned_cols=337 Identities=25% Similarity=0.296 Sum_probs=252.7
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
+++.+.+.++..|+.++++.|+.++...+ ..++|++|++|||||||+++++.+++.+.++ +.++||+||+++||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHH
Confidence 78899999999999999999999965544 3479999999999999999999999999874 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCC
Q 009641 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
.|.++.++++ ...|++|...+|+.....+. ..+++|+|+|||++-.++++.. ..
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~~------------------------l~~~~ViVtT~EK~Dsl~R~~~-~~ 143 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDER------------------------LARYDVIVTTPEKLDSLTRKRP-SW 143 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchhh------------------------hccCCEEEEchHHhhHhhhcCc-ch
Confidence 9999999943 45599999999998755532 2456999999999999988844 36
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
+..+++|||||+|.+.+..++..++.+...++... +..+++.+||
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~-----------------------------------~~~rivgLSA 188 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN-----------------------------------ELIRIVGLSA 188 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHhhC-----------------------------------cceEEEEEee
Confidence 78899999999999888778888998888766432 2248999999
Q ss_pred eecCChhhhhhhccCCceEEecCC--ccccCcccceeeEeeccC----C-CcHHHHHHHHHh-cCCCcEEEEcCChHHHH
Q 009641 275 TLTQDPNKLAQLDLHHPLFLTTGE--TRYKLPERLESYKLICES----K-LKPLYLVALLQS-LGEEKCIVFTSSVESTH 346 (530)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~-~k~~~l~~~l~~-~~~~~~iVf~~s~~~~~ 346 (530)
|++ +...++.+.-.++......+ -....+.....+...... . .....+...+.. ..++++||||+|++.+.
T Consensus 189 Tlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~ 267 (766)
T COG1204 189 TLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAE 267 (766)
T ss_pred ecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHH
Confidence 997 55555554433333111111 111111111111111111 1 112233333333 35679999999999999
Q ss_pred HHHHHHHhc----CC------------------------------CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEe
Q 009641 347 RLCTLLNHF----GE------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (530)
Q Consensus 347 ~l~~~L~~~----~~------------------------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT 392 (530)
..++.|... .. ...+++.||++++.++|..+.+.|+.|.++|||||
T Consensus 268 ~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~T 347 (766)
T COG1204 268 KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVST 347 (766)
T ss_pred HHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEec
Confidence 999988730 00 12367899999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEE----cc-----CCCChhHHHHHHhhhhcCCCC--ccEEEEe
Q 009641 393 DAMTRGMDVEGVNNVVN----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLL 439 (530)
Q Consensus 393 ~~~~~GiDip~~~~VI~----~~-----~p~s~~~y~Qr~GR~gR~g~~--g~~i~~~ 439 (530)
++++.|+|+|.-.+||- |+ .+-++.+++|+.|||||.|-+ |.++++.
T Consensus 348 pTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 348 PTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred hHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 99999999995444442 55 344678999999999998866 6777776
No 58
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1e-37 Score=340.77 Aligned_cols=315 Identities=20% Similarity=0.292 Sum_probs=215.2
Q ss_pred HHHHHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 38 ~i~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
++.+.+.+ .|+ .|+++|+.+++.++ .|+|+++.||||||||. |.+|+...+.. .+.+++||+||++||.|
T Consensus 66 ~f~~~f~~~~g~-~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 66 EFEEFFKKAVGS-EPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHh----CCCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHH
Confidence 44455555 455 89999999877765 59999999999999997 66777666544 35689999999999999
Q ss_pred HHHHHHHhccccCceE---EEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHHHhcCCC
Q 009641 117 VKDVFAAIAPAVGLSV---GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG 192 (530)
Q Consensus 117 ~~~~l~~~~~~~~~~v---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~ 192 (530)
+++.++.++...++.+ +.++|+.+..++... +..+. .+++|+|+||++|.+++....
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~------------------~~~l~~~~~dIlV~Tp~rL~~~~~~l~- 197 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEF------------------MERIENGDFDILITTTMFLSKNYDELG- 197 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHH------------------HHHHhcCCCCEEEECHHHHHHHHHHhc-
Confidence 9999999988776654 357788776554322 12233 358999999999998877522
Q ss_pred CCCCCccEEEEechhHhhh-----------Hhhhh-HHHHHHhhcccCcccccccccccccccccchhhhhccccccCCC
Q 009641 193 FTLEHLCYLVVDETDRLLR-----------EAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (530)
Q Consensus 193 ~~~~~~~~lViDEah~~~~-----------~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (530)
. +++++|+||||+|++ .||.+ .+..++..++..... .....+...... +.
T Consensus 198 --~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~----------~~~~~~~~~~~~-----~~ 259 (1171)
T TIGR01054 198 --P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKL----------YRALHAKKRLEL-----LE 259 (1171)
T ss_pred --C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhcccc----------chHHHHHHHHHH-----HH
Confidence 2 799999999999988 34543 355554433211000 000000000000 00
Q ss_pred CCCCCce--eeEEEeEee-cCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEE
Q 009641 261 DKPYPRL--VKMVLSATL-TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (530)
Q Consensus 261 ~~~~~~~--~~i~~SaT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iV 337 (530)
..+ ... +.+++|||. +..... ....+...+..+..... ...+.+.+..... +...+..+++.. +.++||
T Consensus 260 ~~~-~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~~-~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IV 331 (1171)
T TIGR01054 260 AIP-GKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSDT-LRNVVDVYVEDED--LKETLLEIVKKL-GTGGIV 331 (1171)
T ss_pred hhh-hccCcEEEEEeCCCCccccHH---HHcccccceEecCcccc-ccceEEEEEeccc--HHHHHHHHHHHc-CCCEEE
Confidence 000 111 356789994 443332 22334444444443322 2334444443332 245566777665 468999
Q ss_pred EcCCh---HHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEe----cccccCCCCCC-CCEEEE
Q 009641 338 FTSSV---ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVN 409 (530)
Q Consensus 338 f~~s~---~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT----~~~~~GiDip~-~~~VI~ 409 (530)
||++. +.|+.+++.|...+ +++..+||++++ .+++.|++|+.+||||| ++++||||+|+ +++||+
T Consensus 332 Fv~t~~~~~~a~~l~~~L~~~g---~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~ 404 (1171)
T TIGR01054 332 YVSIDYGKEKAEEIAEFLENHG---VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF 404 (1171)
T ss_pred EEeccccHHHHHHHHHHHHhCC---ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEE
Confidence 99999 99999999999766 899999999973 78999999999999994 89999999999 899999
Q ss_pred ccCC
Q 009641 410 YDKP 413 (530)
Q Consensus 410 ~~~p 413 (530)
||+|
T Consensus 405 ~~~P 408 (1171)
T TIGR01054 405 LGVP 408 (1171)
T ss_pred ECCC
Confidence 8887
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.6e-38 Score=327.41 Aligned_cols=323 Identities=15% Similarity=0.128 Sum_probs=227.9
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHH---------HHHHHHHHhhh--cCCCcccEEEEcCcHHHHHHH
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS---------YALPIVQTLSN--RAVRCLRALVVLPTRDLALQV 117 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~---------~~~~~l~~l~~--~~~~~~~~lil~Pt~~L~~Q~ 117 (530)
..+++.|.++=.++++.+..+++++++|+||||||.+ |+.|.+..+.. ......+++|++||++||.|+
T Consensus 159 ~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi 238 (675)
T PHA02653 159 IPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLH 238 (675)
T ss_pred ccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHH
Confidence 3577777776666777777899999999999999987 33344444321 112345799999999999999
Q ss_pred HHHHHHhccc---cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCC
Q 009641 118 KDVFAAIAPA---VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 118 ~~~l~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
...+.+.... .+.++.+.+|+... .... ......+|+++|++.. ...
T Consensus 239 ~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~---------------------t~~k~~~Ilv~T~~L~--------l~~ 288 (675)
T PHA02653 239 SITLLKSLGFDEIDGSPISLKYGSIPD-ELIN---------------------TNPKPYGLVFSTHKLT--------LNK 288 (675)
T ss_pred HHHHHHHhCccccCCceEEEEECCcch-HHhh---------------------cccCCCCEEEEeCccc--------ccc
Confidence 9998876544 36678888998762 1110 0113568999997631 123
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
++++++|||||||.+...+ +.+..++..... ...|+++|||
T Consensus 289 L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~-------------------------------------~~rq~ILmSA 329 (675)
T PHA02653 289 LFDYGTVIIDEVHEHDQIG--DIIIAVARKHID-------------------------------------KIRSLFLMTA 329 (675)
T ss_pred cccCCEEEccccccCccch--hHHHHHHHHhhh-------------------------------------hcCEEEEEcc
Confidence 6789999999999986553 334444332211 0117899999
Q ss_pred eecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccC----------CCcHHHHHHHHHh---cCCCcEEEEcCC
Q 009641 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES----------KLKPLYLVALLQS---LGEEKCIVFTSS 341 (530)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~k~~~l~~~l~~---~~~~~~iVf~~s 341 (530)
|++.++..+. .++.++..+..... ....+++++..... ..+.. +...+.. ..++.+||||++
T Consensus 330 Tl~~dv~~l~-~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~-~l~~L~~~~~~~~g~iLVFlpg 404 (675)
T PHA02653 330 TLEDDRDRIK-EFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKN-IVTALKKYTPPKGSSGIVFVAS 404 (675)
T ss_pred CCcHhHHHHH-HHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHH-HHHHHHHhhcccCCcEEEEECc
Confidence 9988777664 55666666654321 11233444432211 11222 2233322 235689999999
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHH-hcCCccEEEEecccccCCCCCCCCEEEEcc---CCC---
Q 009641 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF-REGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KPA--- 414 (530)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f-~~g~~~iLVaT~~~~~GiDip~~~~VI~~~---~p~--- 414 (530)
+..++.+++.|.+.. .++.+..+||+|++. .+.+++| ++|+.+|||||+++++|||+|++++||++| .|.
T Consensus 405 ~~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~ 481 (675)
T PHA02653 405 VSQCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFG 481 (675)
T ss_pred HHHHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCccc
Confidence 999999999998752 237899999999974 5677787 689999999999999999999999999998 554
Q ss_pred ------ChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHH
Q 009641 415 ------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449 (530)
Q Consensus 415 ------s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~ 449 (530)
|..+|.||+||+||. ++|.|+.|+++++...+.+
T Consensus 482 g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~r 521 (675)
T PHA02653 482 GKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKR 521 (675)
T ss_pred CcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHH
Confidence 788999999999999 7999999999887544333
No 60
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=8.1e-39 Score=294.85 Aligned_cols=343 Identities=19% Similarity=0.245 Sum_probs=249.2
Q ss_pred HHHHHHHH-CCCCcc-chhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHH
Q 009641 38 RLKVALQN-MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (530)
Q Consensus 38 ~i~~~l~~-~g~~~~-~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~ 115 (530)
.+.++|++ |||+.+ ++.|++|+..++. ..+|+.|++|||+||+++|.+|++-. .+ .+||+.|..+|+.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL~~------~g-ITIV~SPLiALIk 75 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPALVH------GG-ITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHHHh------CC-eEEEehHHHHHHH
Confidence 46678887 788775 7899999888775 56899999999999999999998842 23 7999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHH-----HHhcC
Q 009641 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD-----HINAT 190 (530)
Q Consensus 116 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~-----~l~~~ 190 (530)
++.+.+.++ .+++..+.+..+..+...-+.. +........+++.||+.-.. +|..
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~D---------------L~~ekp~~K~LYITPE~AAt~~FQ~lLn~- 135 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGD---------------LAKEKPTIKMLYITPEGAATDGFQKLLNG- 135 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHH---------------HHhcCCceeEEEEchhhhhhhhHHHHHHH-
Confidence 999999887 5666666666655444322211 11223456899999985421 2221
Q ss_pred CCCCCCCccEEEEechhHhhhHhhh--hHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCcee
Q 009641 191 RGFTLEHLCYLVVDETDRLLREAYQ--AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (530)
Q Consensus 191 ~~~~~~~~~~lViDEah~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (530)
..+-..+.++|+||||++..||.. ...-.+ ..++ .-++.+.
T Consensus 136 -L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~L-G~LR-----------------------------------S~~~~vp 178 (641)
T KOG0352|consen 136 -LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTL-GSLR-----------------------------------SVCPGVP 178 (641)
T ss_pred -HhhhceeeeEEechhhhHhhhccccCcchhhh-hhHH-----------------------------------hhCCCCc
Confidence 122345899999999999777532 111111 1111 1124456
Q ss_pred eEEEeEeecCChhh--hhhhccCCceEEecCCc-cccCcccceeeEeeccCCCcHHHHHHHHHh-------------cCC
Q 009641 269 KMVLSATLTQDPNK--LAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQS-------------LGE 332 (530)
Q Consensus 269 ~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-------------~~~ 332 (530)
.+.++||.+..+++ ..++.++.|+-+...+. +.++...++.-..+ .+-+..|..+-.. ...
T Consensus 179 wvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I---~D~~~~LaDF~~~~LG~~~~~~~~~K~~~ 255 (641)
T KOG0352|consen 179 WVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFI---TDCLTVLADFSSSNLGKHEKASQNKKTFT 255 (641)
T ss_pred eEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHh---hhHhHhHHHHHHHhcCChhhhhcCCCCcC
Confidence 89999999988877 34556777765433221 11111111100011 1122222222211 123
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC
Q 009641 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412 (530)
Q Consensus 333 ~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~ 412 (530)
+..||||.|++.|+.++-.|...| +++..||+++...+|.++.+.|-+++..|++||..+++|||-|+|++|||+++
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~G---i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~ 332 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAG---IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSP 332 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcC---cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCc
Confidence 678999999999999999999777 89999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHH
Q 009641 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (530)
Q Consensus 413 p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~ 453 (530)
|.|...|.|..||+||.|....|-+|++.+|...+.-++++
T Consensus 333 ~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 333 SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred hhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 99999999999999999999999999999998877766554
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.4e-38 Score=349.91 Aligned_cols=362 Identities=17% Similarity=0.215 Sum_probs=250.7
Q ss_pred HHHHHHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHH
Q 009641 37 PRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (530)
Q Consensus 37 ~~i~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~ 115 (530)
.++.+.+++ +|| +|+++|+.+++.++ .|+|+++.||||||||++++++++.... ++.++|||+||++|+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il----~G~d~li~APTGsGKTl~~~~~al~~~~----~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRIL----RGKSFSIVAPTGMGKSTFGAFIALFLAL----KGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHH----cCCCEEEEEcCCCCHHHHHHHHHHHHHh----cCCeEEEEECHHHHHH
Confidence 345566666 899 79999999987776 4899999999999999966655544322 3558999999999999
Q ss_pred HHHHHHHHhcccc--CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCChHHHHHHhcCCC
Q 009641 116 QVKDVFAAIAPAV--GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRG 192 (530)
Q Consensus 116 Q~~~~l~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~Tp~~l~~~l~~~~~ 192 (530)
|+++.++.++... ++.+..++|+.+..++.. .+..+.. .++|+|+||++|.+.+...
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~------------------~~~~l~~g~~dILV~TPgrL~~~~~~l-- 196 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEE------------------FLERIENGDFDILVTTAQFLARNFPEM-- 196 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECCchhHHhHHHH--
Confidence 9999999998765 467778888887665532 2223333 4899999999998876642
Q ss_pred CCCCCccEEEEechhHhhhH-----------hhhhHHHH-HHhhcccCcccccccccccccccccchhhhhccccccCCC
Q 009641 193 FTLEHLCYLVVDETDRLLRE-----------AYQAWLPT-VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (530)
Q Consensus 193 ~~~~~~~~lViDEah~~~~~-----------~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (530)
. ..+++++|+||||+|+++ +|...+.. ++..++...... .......+..+... ..
T Consensus 197 ~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~-------~~~~~~~~~~l~~~-----~~ 263 (1638)
T PRK14701 197 K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGN-------IEDAMEKREILNKE-----IE 263 (1638)
T ss_pred h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccc-------cchhhhhhhhhhhh-----hh
Confidence 1 267999999999999863 55544432 222221100000 00000000000000 00
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcC
Q 009641 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (530)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~ 340 (530)
..+....+.+++|||.+..... . ..+.++..+..+.....+. .+.+.+.......+ ..+..+++.. +.++||||+
T Consensus 264 ~~~~~~~~ll~~SAT~~~r~~~-~-~l~~~~l~f~v~~~~~~lr-~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~ 338 (1638)
T PRK14701 264 KIGNKIGCLIVASATGKAKGDR-V-KLYRELLGFEVGSGRSALR-NIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVP 338 (1638)
T ss_pred hcCCCccEEEEEecCCCchhHH-H-HHhhcCeEEEecCCCCCCC-CcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEe
Confidence 0011122357789999753221 1 2235666666665544433 34455544443333 4677777765 568999999
Q ss_pred ChHH---HHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEe----cccccCCCCCC-CCEEEEccC
Q 009641 341 SVES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDK 412 (530)
Q Consensus 341 s~~~---~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT----~~~~~GiDip~-~~~VI~~~~ 412 (530)
+++. |+.+++.|...+ +++..+||+ |..++++|++|+.+||||| ++++||||+|+ +++|||||+
T Consensus 339 t~~~~e~ae~la~~L~~~G---i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~ 410 (1638)
T PRK14701 339 IDEGAEKAEEIEKYLLEDG---FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGV 410 (1638)
T ss_pred ccccchHHHHHHHHHHHCC---CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCC
Confidence 9875 589999999876 999999995 8899999999999999999 58999999998 999999999
Q ss_pred CC---ChhHHHHHH-------------hhhhcCCCCccEEEEeecchHHHHHHHHHH
Q 009641 413 PA---YIKTYIHRA-------------GRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (530)
Q Consensus 413 p~---s~~~y~Qr~-------------GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~ 453 (530)
|+ +.+.|.|.. ||+||.|.++.++..+.+.+...++.++++
T Consensus 411 Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 411 PKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhcc
Confidence 99 887776655 999999988888776667776666666554
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=9.2e-38 Score=329.59 Aligned_cols=304 Identities=19% Similarity=0.243 Sum_probs=221.9
Q ss_pred hcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHH-HhccccCceEEEeecCCc
Q 009641 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQSS 140 (530)
Q Consensus 62 ~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~-~~~~~~~~~v~~~~g~~~ 140 (530)
++..+..+++++++|+||||||.++.+++++... .+.+++|+.|||++|.|+++.+. .+....|..|+...+...
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 3444445789999999999999999999998763 23489999999999999999885 444444566665544322
Q ss_pred hHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH-hhhHhhhh-HH
Q 009641 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQA-WL 218 (530)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-~~~~~~~~-~~ 218 (530)
......+|+|+||++|++.+.+ ...++++++|||||+|. +++.++.- .+
T Consensus 86 ---------------------------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll 136 (819)
T TIGR01970 86 ---------------------------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALA 136 (819)
T ss_pred ---------------------------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHH
Confidence 1123468999999999998876 35688999999999994 55544432 22
Q ss_pred HHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCC
Q 009641 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (530)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (530)
..+...++ +..++++||||+.... + ..++.++..+....
T Consensus 137 ~~i~~~lr--------------------------------------~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~g 175 (819)
T TIGR01970 137 LDVQSSLR--------------------------------------EDLKILAMSATLDGER--L-SSLLPDAPVVESEG 175 (819)
T ss_pred HHHHHhcC--------------------------------------CCceEEEEeCCCCHHH--H-HHHcCCCcEEEecC
Confidence 33333222 2348999999997542 3 23333333333322
Q ss_pred ccccCcccceeeEeeccCCCcH-----HHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHH
Q 009641 299 TRYKLPERLESYKLICESKLKP-----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (530)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~ 373 (530)
..+ .++.++.......+. ..+..++.. ..+.+|||+++..+++.+++.|.+....++.+..+||+|++++
T Consensus 176 r~~----pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~e 250 (819)
T TIGR01970 176 RSF----PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAA 250 (819)
T ss_pred cce----eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHH
Confidence 221 233444433333332 123333332 3678999999999999999999863223588999999999999
Q ss_pred HHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCC------------------hhHHHHHHhhhhcCCCCccE
Q 009641 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY------------------IKTYIHRAGRTARAGQLGRC 435 (530)
Q Consensus 374 R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s------------------~~~y~Qr~GR~gR~g~~g~~ 435 (530)
|.++++.|++|..+|||||+++++|||||++++||+++.|.. ..+|.||.||+||. ++|.|
T Consensus 251 q~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~c 329 (819)
T TIGR01970 251 QDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVC 329 (819)
T ss_pred HHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEE
Confidence 999999999999999999999999999999999999998752 34689999999999 79999
Q ss_pred EEEeecchHH
Q 009641 436 FTLLHKDEVK 445 (530)
Q Consensus 436 i~~~~~~~~~ 445 (530)
+.++++++..
T Consensus 330 yrL~t~~~~~ 339 (819)
T TIGR01970 330 YRLWSEEQHQ 339 (819)
T ss_pred EEeCCHHHHH
Confidence 9999987654
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.2e-37 Score=318.36 Aligned_cols=303 Identities=17% Similarity=0.162 Sum_probs=209.6
Q ss_pred CCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc
Q 009641 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (530)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 127 (530)
...|+++|.+|+..++. +++.++++|||+|||+++...+ ..+... ...++|||+||++|+.|+.+.+++++..
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~-~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLS-RYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHH-HHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 34899999999877664 6789999999999999765432 222222 2337999999999999999999998654
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechh
Q 009641 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (530)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 207 (530)
....+..+.++.... ...+|+|+||+++.+... ..+.++++||+||||
T Consensus 185 ~~~~~~~i~~g~~~~----------------------------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH 232 (501)
T PHA02558 185 PREAMHKIYSGTAKD----------------------------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECH 232 (501)
T ss_pred cccceeEEecCcccC----------------------------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchh
Confidence 334444444443211 235999999999876432 235789999999999
Q ss_pred HhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhh-h
Q 009641 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-L 286 (530)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~ 286 (530)
++....+ ..++..++. ..+.+++|||+......... .
T Consensus 233 ~~~~~~~----~~il~~~~~--------------------------------------~~~~lGLTATp~~~~~~~~~~~ 270 (501)
T PHA02558 233 LFTGKSL----TSIITKLDN--------------------------------------CKFKFGLTGSLRDGKANILQYV 270 (501)
T ss_pred cccchhH----HHHHHhhhc--------------------------------------cceEEEEeccCCCccccHHHHH
Confidence 9976544 344433321 11579999999654321111 0
Q ss_pred ccCCceEEecCCc---------------------cccCcc----cce-eeEeeccCCCcHHHHHHHHHh--cCCCcEEEE
Q 009641 287 DLHHPLFLTTGET---------------------RYKLPE----RLE-SYKLICESKLKPLYLVALLQS--LGEEKCIVF 338 (530)
Q Consensus 287 ~~~~~~~~~~~~~---------------------~~~~~~----~~~-~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVf 338 (530)
....++....... ...... ... .+........+...+..+... ..+.+++||
T Consensus 271 ~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~ 350 (501)
T PHA02558 271 GLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVM 350 (501)
T ss_pred HhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111221111100 000000 000 000111222233334443332 245789999
Q ss_pred cCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEe-cccccCCCCCCCCEEEEccCCCChh
Q 009641 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIK 417 (530)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT-~~~~~GiDip~~~~VI~~~~p~s~~ 417 (530)
|.++++++.+++.|...+ .++..+||+++.++|..+++.|++|+..||||| +++++|+|+|++++||+++++.|..
T Consensus 351 ~~~~~h~~~L~~~L~~~g---~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~ 427 (501)
T PHA02558 351 FKYVEHGKPLYEMLKKVY---DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKI 427 (501)
T ss_pred EEEHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchh
Confidence 999999999999999866 789999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCcc
Q 009641 418 TYIHRAGRTARAGQLGR 434 (530)
Q Consensus 418 ~y~Qr~GR~gR~g~~g~ 434 (530)
.|+||+||++|.+..+.
T Consensus 428 ~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 428 IVLQSIGRVLRKHGSKS 444 (501)
T ss_pred hhhhhhhccccCCCCCc
Confidence 99999999999876543
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.2e-37 Score=306.66 Aligned_cols=314 Identities=18% Similarity=0.162 Sum_probs=209.4
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhh
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 150 (530)
++++.||||||||.++++|++..+... .+.+++|++|+++|+.|+++.+..++.. .++..+|.........
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~---- 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE---- 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc----
Confidence 589999999999999999999887543 3458999999999999999999997532 4555565543211000
Q ss_pred cCccccCccCCchhHHHhh------cCCCcEEEeCChHHHHHHhcC-CCC--CCC--CccEEEEechhHhhhHhhhhHHH
Q 009641 151 RPKLEAGICYDPEDVLQEL------QSAVDILVATPGRLMDHINAT-RGF--TLE--HLCYLVVDETDRLLREAYQAWLP 219 (530)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~------~~~~~Ili~Tp~~l~~~l~~~-~~~--~~~--~~~~lViDEah~~~~~~~~~~~~ 219 (530)
..+ .......+... ....+|+|+||++++..+... +.. .+. ..++||+||||.+.+.++.. +.
T Consensus 72 ~~~-----~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 72 MGD-----SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred cCC-----chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 000 00000011111 123589999999998877651 111 111 23799999999998765543 55
Q ss_pred HHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCc
Q 009641 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (530)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (530)
.++..+.. ...+++++|||++..+..+.......+........
T Consensus 146 ~~l~~l~~-------------------------------------~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~ 188 (358)
T TIGR01587 146 AVLEVLKD-------------------------------------NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK 188 (358)
T ss_pred HHHHHHHH-------------------------------------cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc
Confidence 55544331 12278999999986555544333222111111100
Q ss_pred cccCcccceeeE-e-eccCCCcHHHHHHHHHh-cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHH
Q 009641 300 RYKLPERLESYK-L-ICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376 (530)
Q Consensus 300 ~~~~~~~~~~~~-~-~~~~~~k~~~l~~~l~~-~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~ 376 (530)
.......+.. . ......+...+..+++. ..++++||||++++.|+.+++.|.+.+ ....+..+||++++.+|.+
T Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~-~~~~~~~~h~~~~~~~r~~ 265 (358)
T TIGR01587 189 --EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENA-PEEEIMLLHSRFTEKDRAK 265 (358)
T ss_pred --cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhc-CCCeEEEEECCCCHHHHHH
Confidence 0000111111 1 11223455666666654 356899999999999999999998754 2246899999999999976
Q ss_pred H----HHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCC----ccEEEEeecc
Q 009641 377 T----LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL----GRCFTLLHKD 442 (530)
Q Consensus 377 ~----~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~----g~~i~~~~~~ 442 (530)
. ++.|++|+..|||||+++++|+|++ +++||++..| ..+|+||+||+||.|+. |.+++|....
T Consensus 266 ~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 266 KEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 4 8899999999999999999999996 8899998776 78999999999998865 3566666544
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.1e-37 Score=329.79 Aligned_cols=304 Identities=20% Similarity=0.243 Sum_probs=220.5
Q ss_pred hcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH-hccccCceEEEeecCCc
Q 009641 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSS 140 (530)
Q Consensus 62 ~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~-~~~~~~~~v~~~~g~~~ 140 (530)
++..+..+++++++||||||||.++.+++++.... ..+++|+.|||++|.|+++.+.+ +....|..++..+++.+
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~ 88 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc
Confidence 44444457899999999999999999998875422 23799999999999999998854 44555667776665543
Q ss_pred hHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH-hhhHhh-hhHH
Q 009641 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAY-QAWL 218 (530)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-~~~~~~-~~~~ 218 (530)
.. ....+|+|+||++|++++.+ ...++++++|||||+|. .++.++ ...+
T Consensus 89 ~~---------------------------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll 139 (812)
T PRK11664 89 KV---------------------------GPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALL 139 (812)
T ss_pred cc---------------------------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHH
Confidence 11 13348999999999998875 35688999999999996 233222 1222
Q ss_pred HHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCC
Q 009641 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (530)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (530)
..++..++ +..++++||||++.. .+. .++.++..+....
T Consensus 140 ~~i~~~lr--------------------------------------~~lqlilmSATl~~~--~l~-~~~~~~~~I~~~g 178 (812)
T PRK11664 140 LDVQQGLR--------------------------------------DDLKLLIMSATLDND--RLQ-QLLPDAPVIVSEG 178 (812)
T ss_pred HHHHHhCC--------------------------------------ccceEEEEecCCCHH--HHH-HhcCCCCEEEecC
Confidence 23332221 234899999999643 233 3333333333322
Q ss_pred ccccCcccceeeEeeccCCCcHH-----HHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHH
Q 009641 299 TRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (530)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~ 373 (530)
..+ .+.+++.......+.. .+...+. ...+.+|||+++..+++.+++.|......++.+..+||+|++.+
T Consensus 179 r~~----pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~e 253 (812)
T PRK11664 179 RSF----PVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAE 253 (812)
T ss_pred ccc----cceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHH
Confidence 211 2344444333333332 2333333 24689999999999999999999863223478999999999999
Q ss_pred HHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCC------------------hhHHHHHHhhhhcCCCCccE
Q 009641 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY------------------IKTYIHRAGRTARAGQLGRC 435 (530)
Q Consensus 374 R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s------------------~~~y~Qr~GR~gR~g~~g~~ 435 (530)
|.++++.|++|+.+|||||+++++|||||++++||+++.++. ..+|.||.||+||. .+|.|
T Consensus 254 q~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~c 332 (812)
T PRK11664 254 QQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGIC 332 (812)
T ss_pred HHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEE
Confidence 999999999999999999999999999999999999887643 35899999999999 69999
Q ss_pred EEEeecchHH
Q 009641 436 FTLLHKDEVK 445 (530)
Q Consensus 436 i~~~~~~~~~ 445 (530)
+.++++.+..
T Consensus 333 yrL~t~~~~~ 342 (812)
T PRK11664 333 LHLYSKEQAE 342 (812)
T ss_pred EEecCHHHHh
Confidence 9999987643
No 66
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.9e-37 Score=310.15 Aligned_cols=356 Identities=22% Similarity=0.247 Sum_probs=248.1
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|..+++.++ .|+ |+.+.||+|||++|.+|++..... +..++|++||++||.|.++++.++.
T Consensus 100 lg~-~p~~VQ~~~~~~ll----~G~--Iae~~TGeGKTla~~lp~~~~al~----G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALL----SGR--LAEMQTGEGKTLTATLPAGTAALA----GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHh----CCC--eeeeeCCCCcHHHHHHHHHHHhhc----CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 786 89999999987765 366 999999999999999999987654 4589999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcCC-------------
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR------------- 191 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~------------- 191 (530)
.++|+++++++|+.+.... ....+++|+|+|...| ++.|+..-
T Consensus 169 ~~lGlsv~~i~gg~~~~~r-----------------------~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~ 225 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDER-----------------------RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLAL 225 (656)
T ss_pred hhcCCEEEEEeCCCCHHHH-----------------------HHHcCCCEEEECCCchhhhhccccccccccccchhhhh
Confidence 9999999999999764322 2235789999999877 44443310
Q ss_pred -----------CCCCCCccEEEEechhHhhh------------------HhhhhHHHHHHhhcccCccccc---------
Q 009641 192 -----------GFTLEHLCYLVVDETDRLLR------------------EAYQAWLPTVLQLTRSDNENRF--------- 233 (530)
Q Consensus 192 -----------~~~~~~~~~lViDEah~~~~------------------~~~~~~~~~i~~~~~~~~~~~~--------- 233 (530)
....+.+.+.||||+|.++= .....+...+...+.....-..
T Consensus 226 ~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~l 305 (656)
T PRK12898 226 ESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIEL 305 (656)
T ss_pred hhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEE
Confidence 11235688999999998631 1122223333332221100000
Q ss_pred c--------cccccccccccc-----------hh---hhh-----------------cccc-------ccC------CCC
Q 009641 234 S--------DASTFLPSAFGS-----------LK---TIR-----------------RCGV-------ERG------FKD 261 (530)
Q Consensus 234 ~--------~~~~~~~~~~~~-----------~~---~~~-----------------~~~~-------~~~------~~~ 261 (530)
. .....++..+.. +. .+. .++. ..+ .++
T Consensus 306 t~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE 385 (656)
T PRK12898 306 TEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKE 385 (656)
T ss_pred cHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhc
Confidence 0 000000000000 00 000 0000 000 000
Q ss_pred --CCCCc----------------eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHH
Q 009641 262 --KPYPR----------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323 (530)
Q Consensus 262 --~~~~~----------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 323 (530)
...++ .+...||||......++...+..+++.+.+.... .....+..+.+....|...|
T Consensus 386 ~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL 462 (656)
T PRK12898 386 GCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAV 462 (656)
T ss_pred CCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHH
Confidence 00000 1245789998877777777777787777665433 11233444556667788888
Q ss_pred HHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCC
Q 009641 324 VALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (530)
Q Consensus 324 ~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDi 401 (530)
...+... .+.++||||+|++.++.+++.|...+ +++..+||++++ |+..+..|+.+...|+|||++++||+||
T Consensus 463 ~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g---i~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI 537 (656)
T PRK12898 463 AARVRELHAQGRPVLVGTRSVAASERLSALLREAG---LPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDI 537 (656)
T ss_pred HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCc
Confidence 8888653 36789999999999999999999876 899999998654 5555556666666899999999999999
Q ss_pred C---CCC-----EEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 402 E---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 402 p---~~~-----~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
+ ++. +||+++.|.+...|.||+||+||.|.+|.+++|++.+|
T Consensus 538 ~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 538 KLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred CCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9 665 99999999999999999999999999999999999876
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.3e-37 Score=318.27 Aligned_cols=357 Identities=18% Similarity=0.222 Sum_probs=238.1
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|..+...+. .|+ ++.+.||+|||+++++|++..... |..++|++||+.||.|.++++..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~----~G~--Iaem~TGeGKTL~a~lp~~l~al~----G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLH----EGN--IAEMQTGEGKTLTATMPLYLNALE----GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHc----CCc--eeeecCCCcchHHHHHHHHHHHHc----CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 687 99999988865432 344 999999999999999999866554 4479999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcC-----CCCCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~-----~~~~~~~~~ 199 (530)
.++|++++++.|+.+...+.. ....++|+|+||++| .++++.. ....++.+.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~----------------------~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~ 201 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKK----------------------AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLN 201 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHH----------------------HhcCCCEEEECCccccchhHHhccccchhhhcccccc
Confidence 999999999999987322221 124579999999999 5544431 113467899
Q ss_pred EEEEechhHhhh----------------HhhhhHHHHHHhhcccCccccccc--------------------cccccccc
Q 009641 200 YLVVDETDRLLR----------------EAYQAWLPTVLQLTRSDNENRFSD--------------------ASTFLPSA 243 (530)
Q Consensus 200 ~lViDEah~~~~----------------~~~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~~~~~ 243 (530)
++|+||||+++= ......+..+...+.......+.. ....+...
T Consensus 202 ~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~ 281 (790)
T PRK09200 202 YAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLE 281 (790)
T ss_pred eEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChh
Confidence 999999999731 112333333433332110000000 00000000
Q ss_pred c--------cchhh---hhc-----------------ccc-------ccC------CCC--CCCCc--------------
Q 009641 244 F--------GSLKT---IRR-----------------CGV-------ERG------FKD--KPYPR-------------- 266 (530)
Q Consensus 244 ~--------~~~~~---~~~-----------------~~~-------~~~------~~~--~~~~~-------------- 266 (530)
. ..+.. +.+ ++. ..+ .++ ..-+.
T Consensus 282 ~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr 361 (790)
T PRK09200 282 HQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFR 361 (790)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHH
Confidence 0 00000 000 000 000 000 00000
Q ss_pred --eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh--cCCCcEEEEcCCh
Q 009641 267 --LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (530)
Q Consensus 267 --~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVf~~s~ 342 (530)
.....+|+|......++...+--+.+.+++.. +..... ....+......|...+...+.. ..+.++||||+|+
T Consensus 362 ~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~k--p~~r~d-~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~ 438 (790)
T PRK09200 362 MFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNR--PIIRID-YPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSI 438 (790)
T ss_pred HhHHHhccCCCChHHHHHHHHHhCCcEEECCCCC--Cccccc-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 01334556654333333333322323222221 111111 1122334556788888887764 3678999999999
Q ss_pred HHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCC---CCCC-----EEEEccCCC
Q 009641 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV---EGVN-----NVVNYDKPA 414 (530)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDi---p~~~-----~VI~~~~p~ 414 (530)
+.++.++..|.+.+ +++..+||++.+.++..+...++.| .|+|||++++||+|+ |++. +||+++.|.
T Consensus 439 ~~se~l~~~L~~~g---i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~ 513 (790)
T PRK09200 439 EQSETFSKLLDEAG---IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME 513 (790)
T ss_pred HHHHHHHHHHHHCC---CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC
Confidence 99999999999876 8999999999998888888877776 799999999999999 6898 999999999
Q ss_pred ChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 415 s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
+.+.|.||+||+||.|.+|.++.|++.+|
T Consensus 514 s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 514 SRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred CHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 99999999999999999999999999876
No 68
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-37 Score=325.66 Aligned_cols=338 Identities=22% Similarity=0.330 Sum_probs=258.9
Q ss_pred HHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH
Q 009641 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (530)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (530)
......||...+++-|.+|+..++ .|+|+++.+|||.||++||.+|++- .+.-+|||.|..+|++.+..
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~~~l----~Gkd~fvlmpTG~GKSLCYQlPA~l-------~~gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAINATL----SGKDCFVLMPTGGGKSLCYQLPALL-------LGGVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHHHHhccccCChhHHHHHHHHH----cCCceEEEeecCCceeeEeeccccc-------cCCceEEeccHHHHHHHHHH
Confidence 334445899999999999987655 5999999999999999999999872 23379999999999988777
Q ss_pred HHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC---CCcEEEeCChHHHHHHhcC-CCCCC
Q 009641 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS---AVDILVATPGRLMDHINAT-RGFTL 195 (530)
Q Consensus 120 ~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Ili~Tp~~l~~~l~~~-~~~~~ 195 (530)
.+... ++....+.++.....+.. +++.+.. .++|++.||+++...-.-. ....+
T Consensus 323 ~L~~~----~I~a~~L~s~q~~~~~~~------------------i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L 380 (941)
T KOG0351|consen 323 HLSKK----GIPACFLSSIQTAAERLA------------------ILQKLANGNPIIKILYVTPEKVVASEGLLESLADL 380 (941)
T ss_pred hhhhc----CcceeeccccccHHHHHH------------------HHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhc
Confidence 77443 788888888877655432 2333333 4799999999885432110 11223
Q ss_pred CC---ccEEEEechhHhhhHh--hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeE
Q 009641 196 EH---LCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (530)
Q Consensus 196 ~~---~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (530)
.. +.++||||||+...++ |......+...... .+.+.++
T Consensus 381 ~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~------------------------------------~~~vP~i 424 (941)
T KOG0351|consen 381 YARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR------------------------------------FPGVPFI 424 (941)
T ss_pred cCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh------------------------------------CCCCCeE
Confidence 33 8899999999998775 33333333322111 1224789
Q ss_pred EEeEeecCChhh--hhhhccCCceEEecCCccccCcccceeeEeeccC-CCcHHHHHHHHH-hcCCCcEEEEcCChHHHH
Q 009641 271 VLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQ-SLGEEKCIVFTSSVESTH 346 (530)
Q Consensus 271 ~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~-~~~~~~~iVf~~s~~~~~ 346 (530)
.+|||.+..+.. +..+.+.++.++.....+.++ .|.+.... ......+....+ ......+||||.++.+|+
T Consensus 425 ALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL-----~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce 499 (941)
T KOG0351|consen 425 ALTATATERVREDVIRSLGLRNPELFKSSFNRPNL-----KYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECE 499 (941)
T ss_pred EeehhccHHHHHHHHHHhCCCCcceecccCCCCCc-----eEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHH
Confidence 999999887766 444567777766665544333 22222222 233333333333 457789999999999999
Q ss_pred HHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhh
Q 009641 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (530)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~ 426 (530)
.++..|...+ ..+..||++|+..+|..+.+.|..++.+|+|||=++++|||.|+|+.||||.+|++.+.|.|.+|||
T Consensus 500 ~vs~~L~~~~---~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRA 576 (941)
T KOG0351|consen 500 QVSAVLRSLG---KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRA 576 (941)
T ss_pred HHHHHHHHhc---hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhcccc
Confidence 9999999877 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeecchHHHHHHHHHHh
Q 009641 427 ARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (530)
Q Consensus 427 gR~g~~g~~i~~~~~~~~~~~~~~~~~~ 454 (530)
||.|....|++|+...|...++.++..-
T Consensus 577 GRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 577 GRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999999999999999998888887664
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3.5e-36 Score=308.45 Aligned_cols=358 Identities=18% Similarity=0.219 Sum_probs=230.7
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|..+ .+. ..+..++.++||+|||++|++|++..... +..++|++|+++||.|+++++..+.
T Consensus 67 lgl-rpydVQlig--~l~----l~~G~Iaem~TGeGKTLta~Lpa~l~aL~----g~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 67 LGM-FPYDVQVLG--AIV----LHQGNIAEMKTGEGKTLTATMPLYLNALT----GKGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred cCC-CccHHHHHH--HHH----hcCCceeEecCCcchHHHHHHHHHHHhhc----CCceEEeCCCHHHHHHHHHHHHHHH
Confidence 564 555555544 322 23447999999999999999998766654 3369999999999999999999999
Q ss_pred cccCceEEEeecCCc---hHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcC-----CCCCCC
Q 009641 126 PAVGLSVGLAVGQSS---IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLE 196 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~-----~~~~~~ 196 (530)
.++|+++++.+++.. ..... +....+++|+|+||++| .+.+... ....++
T Consensus 136 ~~LGLsv~~~~~~s~~~~~~~~~---------------------rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r 194 (762)
T TIGR03714 136 EWLGLTVSLGVVDDPDEEYDANE---------------------KRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLR 194 (762)
T ss_pred hhcCCcEEEEECCCCccccCHHH---------------------HHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccc
Confidence 999999998777532 11111 11225689999999999 5555321 223467
Q ss_pred CccEEEEechhHhhhHh----------------hhhHHHHHHhhcccCccc---------ccccc-----ccc--ccccc
Q 009641 197 HLCYLVVDETDRLLREA----------------YQAWLPTVLQLTRSDNEN---------RFSDA-----STF--LPSAF 244 (530)
Q Consensus 197 ~~~~lViDEah~~~~~~----------------~~~~~~~i~~~~~~~~~~---------~~~~~-----~~~--~~~~~ 244 (530)
.+.++|+||||+|+-+. ....+..+...+.....- .+.+. ... .+..+
T Consensus 195 ~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~ 274 (762)
T TIGR03714 195 PFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLY 274 (762)
T ss_pred cCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccC
Confidence 89999999999984321 222333333333221000 00000 000 00000
Q ss_pred c------------chhh---hhc-----------------ccc-------ccC------CCC--CCCCc-----------
Q 009641 245 G------------SLKT---IRR-----------------CGV-------ERG------FKD--KPYPR----------- 266 (530)
Q Consensus 245 ~------------~~~~---~~~-----------------~~~-------~~~------~~~--~~~~~----------- 266 (530)
. .+.. +.+ ++. ..+ .++ ..-+.
T Consensus 275 ~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn 354 (762)
T TIGR03714 275 SEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQN 354 (762)
T ss_pred ChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHH
Confidence 0 0000 000 000 000 000 00000
Q ss_pred -----eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh--cCCCcEEEEc
Q 009641 267 -----LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFT 339 (530)
Q Consensus 267 -----~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVf~ 339 (530)
.+...||+|......++...+--+.+.+++.... ... -..-.+......|...+...+.. ..+.++||||
T Consensus 355 ~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~--~r~-d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft 431 (762)
T TIGR03714 355 LFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPI--IRI-DYPDKIYATLPEKLMATLEDVKEYHETGQPVLLIT 431 (762)
T ss_pred HHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCe--eee-eCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 0234556665444444444333333333222111 101 11123344556788888887764 4678999999
Q ss_pred CChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCC---------CCCEEEEc
Q 009641 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---------GVNNVVNY 410 (530)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip---------~~~~VI~~ 410 (530)
+|++.++.++..|.+.+ +++..+||++.+.+|..+.+.++.| .|+|||++++||+||+ ++.+|+++
T Consensus 432 ~s~~~se~ls~~L~~~g---i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~ 506 (762)
T TIGR03714 432 GSVEMSEIYSELLLREG---IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTE 506 (762)
T ss_pred CcHHHHHHHHHHHHHCC---CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEec
Confidence 99999999999999876 8899999999999888887777777 7999999999999999 89999999
Q ss_pred cCCCChhHHHHHHhhhhcCCCCccEEEEeecchH
Q 009641 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (530)
Q Consensus 411 ~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~ 444 (530)
++|....+ .||+||+||.|.+|.++.|++.+|.
T Consensus 507 ~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 507 RMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 99988766 9999999999999999999998763
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=8.1e-36 Score=303.71 Aligned_cols=357 Identities=19% Similarity=0.194 Sum_probs=236.6
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|..+...+ .+..++.++||+|||+++++|++-.... +..+.|++||+.||.|.++++.++.
T Consensus 53 lg~-~p~~vQlig~~~l------~~G~Iaem~TGeGKTLva~lpa~l~aL~----G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL------HKGKIAEMKTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhh------cCCceeeecCCCccHHHHHHHHHHHHHh----CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 786 8999998764432 2344999999999999999999644443 3369999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcCC-----CCCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (530)
.++|++++++.|+.+...+.. ...++|+|+||++| +++++..- ...++.+.
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~-----------------------~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~ 178 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERRE-----------------------AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFH 178 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHH-----------------------hcCCCEEEECCCchhhHHHhcccccchhhhhccccc
Confidence 999999999999987554422 23479999999999 88887631 23578899
Q ss_pred EEEEechhHhhhHhhh----------------hHHHHHHhhcccCcccc---------cccc-----ccc--ccccccc-
Q 009641 200 YLVVDETDRLLREAYQ----------------AWLPTVLQLTRSDNENR---------FSDA-----STF--LPSAFGS- 246 (530)
Q Consensus 200 ~lViDEah~~~~~~~~----------------~~~~~i~~~~~~~~~~~---------~~~~-----~~~--~~~~~~~- 246 (530)
++|+||+|+++=+.-. .....+...+.....-. +.+. ... .+..+..
T Consensus 179 ~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~ 258 (745)
T TIGR00963 179 FAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLE 258 (745)
T ss_pred eeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChh
Confidence 9999999997542110 11111111111100000 0000 000 0000000
Q ss_pred -----------hhh---hhc-----------------ccc-------ccC------CCC--CCCCc--------------
Q 009641 247 -----------LKT---IRR-----------------CGV-------ERG------FKD--KPYPR-------------- 266 (530)
Q Consensus 247 -----------~~~---~~~-----------------~~~-------~~~------~~~--~~~~~-------------- 266 (530)
+.. +.+ ++. ..+ .++ ..-+.
T Consensus 259 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr 338 (745)
T TIGR00963 259 NSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFR 338 (745)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHh
Confidence 000 000 000 000 000 00000
Q ss_pred --eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH--hcCCCcEEEEcCCh
Q 009641 267 --LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSV 342 (530)
Q Consensus 267 --~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~iVf~~s~ 342 (530)
.....||+|......++...+--+.+.+++...... .. ..-.+......|...+...+. ...+.|+||||+|+
T Consensus 339 ~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R--~d-~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si 415 (745)
T TIGR00963 339 LYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIR--KD-LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSV 415 (745)
T ss_pred hCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeee--ee-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 012345555544334444433333333332221110 00 111223334556666666553 34688999999999
Q ss_pred HHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCC-------CCEEEEccCCCC
Q 009641 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG-------VNNVVNYDKPAY 415 (530)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~-------~~~VI~~~~p~s 415 (530)
+.++.+++.|.+.+ ++...+|++ +.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|
T Consensus 416 ~~se~ls~~L~~~g---i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s 490 (745)
T TIGR00963 416 EKSELLSNLLKERG---IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHES 490 (745)
T ss_pred HHHHHHHHHHHHcC---CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCc
Confidence 99999999999876 888899998 788999999999999999999999999999997 459999999999
Q ss_pred hhHHHHHHhhhhcCCCCccEEEEeecchH
Q 009641 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (530)
Q Consensus 416 ~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~ 444 (530)
.+.|.|+.||+||.|.+|.+..|++.+|.
T Consensus 491 ~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 491 RRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 99999999999999999999999999863
No 71
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=9.4e-37 Score=309.44 Aligned_cols=419 Identities=19% Similarity=0.220 Sum_probs=289.0
Q ss_pred HHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc------CCCcccEEEEcCcHHHHHH
Q 009641 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 43 l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~------~~~~~~~lil~Pt~~L~~Q 116 (530)
..-++|.+++.+|..+++.+.. .+.|+||+||||||||-+|++.++..+... ..++.+++||+|+++||.+
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~---SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~E 179 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYK---SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAE 179 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhc---CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHH
Confidence 3447889999999999887765 578999999999999999999999988852 2256789999999999999
Q ss_pred HHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCC--CCC
Q 009641 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR--GFT 194 (530)
Q Consensus 117 ~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~--~~~ 194 (530)
+++.+.+-+..+|+.|..++|++...+... ..++|+|+|||++--.-++.. ...
T Consensus 180 m~~~~~kkl~~~gi~v~ELTGD~ql~~tei------------------------~~tqiiVTTPEKwDvvTRk~~~d~~l 235 (1230)
T KOG0952|consen 180 MVDKFSKKLAPLGISVRELTGDTQLTKTEI------------------------ADTQIIVTTPEKWDVVTRKSVGDSAL 235 (1230)
T ss_pred HHHHHhhhcccccceEEEecCcchhhHHHH------------------------HhcCEEEecccceeeeeeeeccchhh
Confidence 999999888888999999999998665531 346999999999844333322 123
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
++.+++|||||+|.+ .+.++..++.|..++...-. ....-++++.+||
T Consensus 236 ~~~V~LviIDEVHlL-hd~RGpvlEtiVaRtlr~ve-------------------------------ssqs~IRivgLSA 283 (1230)
T KOG0952|consen 236 FSLVRLVIIDEVHLL-HDDRGPVLETIVARTLRLVE-------------------------------SSQSMIRIVGLSA 283 (1230)
T ss_pred hhheeeEEeeeehhh-cCcccchHHHHHHHHHHHHH-------------------------------hhhhheEEEEeec
Confidence 567999999999955 77788999999887653110 1113347999999
Q ss_pred eecCChhhhhhhccCCc-e-EEecCCccccCcccceeeEeecc-CCCc--------HHHHHHHHHhcCCCcEEEEcCChH
Q 009641 275 TLTQDPNKLAQLDLHHP-L-FLTTGETRYKLPERLESYKLICE-SKLK--------PLYLVALLQSLGEEKCIVFTSSVE 343 (530)
Q Consensus 275 T~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~~k--------~~~l~~~l~~~~~~~~iVf~~s~~ 343 (530)
|+|+ ..+++.+...+| . ++.....-.+.+-....+-.... ...+ ...+.+.+ ..+.+++|||.++.
T Consensus 284 TlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~qVlvFvhsR~ 360 (1230)
T KOG0952|consen 284 TLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGHQVLVFVHSRN 360 (1230)
T ss_pred cCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCCeEEEEEecCh
Confidence 9974 444444332221 1 11111111122222111111111 1111 11222222 24789999999999
Q ss_pred HHHHHHHHHHhcCC--------------------CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCC
Q 009641 344 STHRLCTLLNHFGE--------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403 (530)
Q Consensus 344 ~~~~l~~~L~~~~~--------------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~ 403 (530)
.+...++.|.+... .......+|+||...+|....+.|+.|.++||+||.+++.|+|+|+
T Consensus 361 ~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA 440 (1230)
T KOG0952|consen 361 ETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA 440 (1230)
T ss_pred HHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc
Confidence 99999988854311 1146778999999999999999999999999999999999999995
Q ss_pred CCEEEEc-----cCCC------ChhHHHHHHhhhhc--CCCCccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHHh
Q 009641 404 VNNVVNY-----DKPA------YIKTYIHRAGRTAR--AGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 470 (530)
Q Consensus 404 ~~~VI~~-----~~p~------s~~~y~Qr~GR~gR--~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (530)
..||.- |... .+-+-+|..||||| ++..|.++++.+.+-...|..++.....-+ ..+.+.+++
T Consensus 441 -~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piE---S~~~~~L~d 516 (1230)
T KOG0952|consen 441 -YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIE---SQLLPCLID 516 (1230)
T ss_pred -eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhH---HHHHHHHHH
Confidence 556653 3322 35678999999999 556699999998888888888876653222 233344444
Q ss_pred hhH--------HHHHHHHhccchhhhhhhhcc--------------ccCCCcccchhhccccccccccccccccccCCc
Q 009641 471 SLR--------PVYKSVRGGISDEAFWKVGCD--------------LHGVNRVRRSFYQTSGDRALGKGMVAFCSNHGQ 527 (530)
Q Consensus 471 ~~~--------~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (530)
.+. ..+..+.+|++....+.+... ...+++-++.++.....++..-.|+.+.+.+|.
T Consensus 517 nLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~ 595 (1230)
T KOG0952|consen 517 NLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGY 595 (1230)
T ss_pred hhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccce
Confidence 433 446677777777654443221 122344445556666666666678888777764
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=8.4e-36 Score=315.96 Aligned_cols=346 Identities=24% Similarity=0.320 Sum_probs=260.4
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
.+..+..++.+.|...|+++|.+|+..+.. |+|++|..|||||||.+|++|+++.+..++ ..++|||.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCc--CccEEEEechhhhH
Confidence 455668888888999999999999888764 899999999999999999999999999864 33899999999999
Q ss_pred HHHHHHHHHhccccC--ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCC
Q 009641 115 LQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~ 192 (530)
+++.+.++++....+ +.+..++|++...+.. +.....|+|+++||++|..++.+...
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~---------------------~~~~~pp~IllTNpdMLh~~llr~~~ 187 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERR---------------------AIIRNPPDILLTNPDMLHYLLLRNHD 187 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHH---------------------HHHhCCCCEEEeCHHHHHHHhccCcc
Confidence 999999999988876 8889999998766553 22346789999999999885544332
Q ss_pred ---CCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceee
Q 009641 193 ---FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (530)
Q Consensus 193 ---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (530)
+.++++++||+||+|.. ...++..+..++..+..... .+....|+
T Consensus 188 ~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~-------------------------------~~~~~~q~ 235 (851)
T COG1205 188 AWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLR-------------------------------RYGSPLQI 235 (851)
T ss_pred hHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHh-------------------------------ccCCCceE
Confidence 24678999999999965 66677777777766543211 01133489
Q ss_pred EEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeecc---------CCCcHHHHHHHHHh--cCCCcEEEE
Q 009641 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---------SKLKPLYLVALLQS--LGEEKCIVF 338 (530)
Q Consensus 270 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~~--~~~~~~iVf 338 (530)
|+.|||.....+.... .........+... ..+.....+....+ ...+...+..+... ..+-++|+|
T Consensus 236 i~~SAT~~np~e~~~~-l~~~~f~~~v~~~--g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F 312 (851)
T COG1205 236 ICTSATLANPGEFAEE-LFGRDFEVPVDED--GSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVF 312 (851)
T ss_pred EEEeccccChHHHHHH-hcCCcceeeccCC--CCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEE
Confidence 9999999755444333 3333333322211 11222222222222 11233333333332 257799999
Q ss_pred cCChHHHHHHH----HHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC
Q 009641 339 TSSVESTHRLC----TLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (530)
Q Consensus 339 ~~s~~~~~~l~----~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p 413 (530)
+.++..++.+. ..+...+ .....+..++|+|...+|.+++..|+.|+..++++|++++-|||+.+++.||..+.|
T Consensus 313 ~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P 392 (851)
T COG1205 313 FRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYP 392 (851)
T ss_pred EehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCC
Confidence 99999999996 3333333 344578899999999999999999999999999999999999999999999999999
Q ss_pred C-ChhHHHHHHhhhhcCCCCccEEEEeecc
Q 009641 414 A-YIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (530)
Q Consensus 414 ~-s~~~y~Qr~GR~gR~g~~g~~i~~~~~~ 442 (530)
. +..+++||.||+||.++.+..+.....+
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred CchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 9 8999999999999999777766666643
No 73
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.8e-36 Score=301.83 Aligned_cols=341 Identities=24% Similarity=0.290 Sum_probs=232.1
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
+++.......--..-.+|+||.+. ....+ |+|+||++|||+|||+++...|+.++...+ ..++|+++||+.|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~ei----vq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p--~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEEL----VQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP--KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHH----hHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC--cceEEEeeCCchHH
Confidence 333333333333445899999986 34444 999999999999999999999999988753 46899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCC
Q 009641 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
.|+...+..++.. ..+....|+....... ..+....+|+++||+.+.+.|.+.....
T Consensus 120 ~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r---------------------~~i~~s~~vff~TpQil~ndL~~~~~~~ 176 (746)
T KOG0354|consen 120 NQQIACFSIYLIP--YSVTGQLGDTVPRSNR---------------------GEIVASKRVFFRTPQILENDLKSGLHDE 176 (746)
T ss_pred HHHHHHHhhccCc--ccceeeccCccCCCch---------------------hhhhcccceEEeChHhhhhhcccccccc
Confidence 9999777777654 4555555553322211 1334567999999999999998754445
Q ss_pred CCCccEEEEechhHhhhHh-hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEe
Q 009641 195 LEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (530)
++.|.++||||||+-.... |-..+..++..-. ...|++.+|
T Consensus 177 ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~--------------------------------------~~~qILgLT 218 (746)
T KOG0354|consen 177 LSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN--------------------------------------QGNQILGLT 218 (746)
T ss_pred cceEEEEEEcccccccccccHHHHHHHHHHhhh--------------------------------------ccccEEEEe
Confidence 7899999999999975443 3333334443211 111788999
Q ss_pred EeecCChhhhhhhccC---------------------C--ceE------------------------------EecCC--
Q 009641 274 ATLTQDPNKLAQLDLH---------------------H--PLF------------------------------LTTGE-- 298 (530)
Q Consensus 274 aT~~~~~~~~~~~~~~---------------------~--~~~------------------------------~~~~~-- 298 (530)
||+..+.......... . +.. .....
T Consensus 219 ASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~ 298 (746)
T KOG0354|consen 219 ASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKS 298 (746)
T ss_pred cCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccccccc
Confidence 9988663222110000 0 000 00000
Q ss_pred -------------ccccCcc----------------------cce-----------------------------------
Q 009641 299 -------------TRYKLPE----------------------RLE----------------------------------- 308 (530)
Q Consensus 299 -------------~~~~~~~----------------------~~~----------------------------------- 308 (530)
.....+. .+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~ 378 (746)
T KOG0354|consen 299 TSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTE 378 (746)
T ss_pred ccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHH
Confidence 0000000 000
Q ss_pred ------eeEee-ccCCCcHHHHHHHHH----hcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccc--------cC
Q 009641 309 ------SYKLI-CESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQ 369 (530)
Q Consensus 309 ------~~~~~-~~~~~k~~~l~~~l~----~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~--------~~ 369 (530)
++... ...+.|+..+..++. ..+..++||||.++..|..|..+|......+++...+-| +|
T Consensus 379 ~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gm 458 (746)
T KOG0354|consen 379 NMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGM 458 (746)
T ss_pred HHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccccccccc
Confidence 00000 012334444444443 224579999999999999999999854344344444433 79
Q ss_pred CHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHH
Q 009641 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (530)
Q Consensus 370 ~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~ 445 (530)
++.+..+++++|++|+.+|||||+++++|+||+.|+.||-||...|+...+||.|| ||+ +.|.++++++..+..
T Consensus 459 tqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~ 532 (746)
T KOG0354|consen 459 TQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVI 532 (746)
T ss_pred CHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999 998 678999988855443
No 74
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=9.5e-35 Score=315.02 Aligned_cols=323 Identities=23% Similarity=0.314 Sum_probs=229.4
Q ss_pred CCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc
Q 009641 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (530)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 127 (530)
.-++++||.+++..++. +|+++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.+++++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~~---~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLHK---KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 34899999998766543 399999999999999999988877742 3458999999999999999999998654
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechh
Q 009641 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (530)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 207 (530)
.+.++..++|+.+..+.. .+...++|+|+||+.+.+.+.. +.+.+.++++|||||||
T Consensus 85 ~~~~v~~~~g~~~~~~r~----------------------~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRA----------------------ELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAH 141 (773)
T ss_pred CCceEEEEeCCCCHHHHH----------------------HHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCc
Confidence 455788888887654432 1224569999999999887765 45678899999999999
Q ss_pred HhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhh-
Q 009641 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL- 286 (530)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~- 286 (530)
++........+...+.... +...++++|||+......+...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~--------------------------------------~~~~il~lTaTP~~~~~~i~~~~ 183 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDA--------------------------------------KNPLVLGLTASPGSDEEKIKEVC 183 (773)
T ss_pred cccccccHHHHHHHHHhcC--------------------------------------CCCEEEEEEcCCCCCHHHHHHHH
Confidence 9864432222222111100 1115778888875432211110
Q ss_pred ---cc-----------------CCce--EEec--CCc------------------------cccCc--------------
Q 009641 287 ---DL-----------------HHPL--FLTT--GET------------------------RYKLP-------------- 304 (530)
Q Consensus 287 ---~~-----------------~~~~--~~~~--~~~------------------------~~~~~-------------- 304 (530)
.. ..+. .+.. ... .....
T Consensus 184 ~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~ 263 (773)
T PRK13766 184 ENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKK 263 (773)
T ss_pred HhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHH
Confidence 00 0000 0000 000 00000
Q ss_pred --ccc--------------------------------------------------------------------eeeEeec
Q 009641 305 --ERL--------------------------------------------------------------------ESYKLIC 314 (530)
Q Consensus 305 --~~~--------------------------------------------------------------------~~~~~~~ 314 (530)
..+ .......
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (773)
T PRK13766 264 LQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELD 343 (773)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcc
Confidence 000 0000001
Q ss_pred cCCCcHHHHHHHHHh----cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEcccc--------CCHHHHHHHHHHHh
Q 009641 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL--------QRQSVRSKTLKAFR 382 (530)
Q Consensus 315 ~~~~k~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~--------~~~~~R~~~~~~f~ 382 (530)
....|...|..+++. ..+.++||||++++.|+.+.+.|...+ +.+..+||. |++.+|..++++|+
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 420 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG---IKAVRFVGQASKDGDKGMSQKEQIEILDKFR 420 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC---CceEEEEccccccccCCCCHHHHHHHHHHHH
Confidence 223456666666654 467899999999999999999997655 677778775 99999999999999
Q ss_pred cCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 383 ~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
+|+.++||||+++++|+|+|++++||+||+|++...|+||+||+||.| .|.+++++..+.
T Consensus 421 ~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t 480 (773)
T PRK13766 421 AGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGT 480 (773)
T ss_pred cCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999986 488888887653
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.9e-35 Score=301.80 Aligned_cols=311 Identities=19% Similarity=0.203 Sum_probs=212.4
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
+|+|||++|+..++... ..++.++++|||+|||++.+..+ ..+. .++|||||+..|+.||.+.+.++.....
T Consensus 255 ~LRpYQ~eAl~~~~~~g-r~r~GIIvLPtGaGKTlvai~aa-~~l~------k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVTAA-CTVK------KSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcC-CCCCcEEEeCCCCChHHHHHHHH-HHhC------CCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 59999999998876421 12578999999999999876543 3332 3699999999999999999999865445
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcC-------CCCCCCCccEEE
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-------RGFTLEHLCYLV 202 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~-------~~~~~~~~~~lV 202 (530)
..+..++|+.... .....+|+|+|++.+.....+. ..+.-..+++||
T Consensus 327 ~~I~~~tg~~k~~--------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII 380 (732)
T TIGR00603 327 SQICRFTSDAKER--------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLIL 380 (732)
T ss_pred ceEEEEecCcccc--------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEE
Confidence 5666676653211 0123589999999875432221 112234689999
Q ss_pred EechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhh
Q 009641 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (530)
Q Consensus 203 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 282 (530)
+||||++....+.. ++..+... ..+.+|||+...-..
T Consensus 381 ~DEvH~lpA~~fr~----il~~l~a~---------------------------------------~RLGLTATP~ReD~~ 417 (732)
T TIGR00603 381 LDEVHVVPAAMFRR----VLTIVQAH---------------------------------------CKLGLTATLVREDDK 417 (732)
T ss_pred EEccccccHHHHHH----HHHhcCcC---------------------------------------cEEEEeecCcccCCc
Confidence 99999996655443 33322211 368899998754332
Q ss_pred hhhh-ccCCceEEecCCccccCccccee--------------------------eEeeccCCCcHHHHHHHHHhc--CCC
Q 009641 283 LAQL-DLHHPLFLTTGETRYKLPERLES--------------------------YKLICESKLKPLYLVALLQSL--GEE 333 (530)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~k~~~l~~~l~~~--~~~ 333 (530)
.... .+..|..+............+.. .........|...+..+++.. .+.
T Consensus 418 ~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~ 497 (732)
T TIGR00603 418 ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGD 497 (732)
T ss_pred hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCC
Confidence 2111 12223332221100000000000 001112234555555555543 678
Q ss_pred cEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcC-CccEEEEecccccCCCCCCCCEEEEccC
Q 009641 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYDK 412 (530)
Q Consensus 334 ~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiDip~~~~VI~~~~ 412 (530)
++||||.+...+..+++.|. +..+||++++.+|.++++.|+.| ..++||+|+++++|||+|++++||+++.
T Consensus 498 kiLVF~~~~~~l~~~a~~L~--------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~ 569 (732)
T TIGR00603 498 KIIVFSDNVFALKEYAIKLG--------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS 569 (732)
T ss_pred eEEEEeCCHHHHHHHHHHcC--------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC
Confidence 99999999999998888762 24589999999999999999975 7899999999999999999999999998
Q ss_pred C-CChhHHHHHHhhhhcCCCCccE-------EEEeecchHH
Q 009641 413 P-AYIKTYIHRAGRTARAGQLGRC-------FTLLHKDEVK 445 (530)
Q Consensus 413 p-~s~~~y~Qr~GR~gR~g~~g~~-------i~~~~~~~~~ 445 (530)
| .|...|+||+||++|.+..|.+ +.+++++..+
T Consensus 570 ~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 570 HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 7 5999999999999998776664 7888887544
No 76
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-35 Score=272.52 Aligned_cols=290 Identities=25% Similarity=0.365 Sum_probs=218.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccc---CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 104 ALVVLPTRDLALQVKDVFAAIAPAV---GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 104 ~lil~Pt~~L~~Q~~~~l~~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
++|+-|+++|++|.++.+++|-..+ .++..++.|+.....+.. .+..+.+|+|+||
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~---------------------ql~~g~~ivvGtp 347 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCK---------------------QLKDGTHIVVGTP 347 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHH---------------------HhhcCceeeecCc
Confidence 9999999999999999877764443 234446666665555543 3457789999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (530)
+|+.+.+.. +.+.+...+++|+|||+.++.+++.+.+..+...++....+
T Consensus 348 gRl~~~is~-g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd----------------------------- 397 (725)
T KOG0349|consen 348 GRLLQPISK-GLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD----------------------------- 397 (725)
T ss_pred hhhhhhhhc-cceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcC-----------------------------
Confidence 999999987 56788899999999999999999999998888877654322
Q ss_pred CCCCCceeeEEEeEeecC-ChhhhhhhccCCceEEecCCccccCcccceeeEeecc------------------------
Q 009641 261 DKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE------------------------ 315 (530)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 315 (530)
..++|.++.|||+.. ++..+.+..++-|..+...... .++...+++.....
T Consensus 398 ---g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn 473 (725)
T KOG0349|consen 398 ---GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDN 473 (725)
T ss_pred ---CcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccceeecCCccCccHHHHhhhhccCCcccccc
Confidence 123477888998753 2334444445555554433221 11222222111000
Q ss_pred ------CCC---------cHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHH
Q 009641 316 ------SKL---------KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380 (530)
Q Consensus 316 ------~~~---------k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 380 (530)
+.+ |-+.-...+++..-.++||||.|...|+.+.+++.+.+...+.+.++||+..+.+|.+.++.
T Consensus 474 ~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~ 553 (725)
T KOG0349|consen 474 LLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLES 553 (725)
T ss_pred cccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHh
Confidence 011 11112223344456799999999999999999999988888999999999999999999999
Q ss_pred HhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHH
Q 009641 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 448 (530)
Q Consensus 381 f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~ 448 (530)
|+.++.+.|||||+++||+||.++.++|+..+|.....|+||+||+||+.+-|.++.++...-.+.+-
T Consensus 554 Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwy 621 (725)
T KOG0349|consen 554 FKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWY 621 (725)
T ss_pred hhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheee
Confidence 99999999999999999999999999999999999999999999999999999999998765444333
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=6.5e-34 Score=278.28 Aligned_cols=311 Identities=19% Similarity=0.195 Sum_probs=197.3
Q ss_pred hhHHHHHHhcCCCCCCC--cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc----
Q 009641 54 VQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA---- 127 (530)
Q Consensus 54 ~Q~~a~~~~~~~~~~~~--~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~---- 127 (530)
+|.++++.+.. +. ++++.||||||||.++++|++.. +.+++|++|+++|++|+++.++++...
T Consensus 1 hQ~~~~~~~~~----~~~~~~~i~apTGsGKT~~~~~~~l~~-------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQS----KDADIIFNTAPTGAGKTLAWLTPLLHG-------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHc----CCCCEEEEECCCCCCHHHHHHHHHHHc-------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 58999888765 33 48899999999999999998841 236899999999999999999988643
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHH----H-hhcCCCcEEEeCChHHHHHHhcCC---CC----CC
Q 009641 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL----Q-ELQSAVDILVATPGRLMDHINATR---GF----TL 195 (530)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~Ili~Tp~~l~~~l~~~~---~~----~~ 195 (530)
.+..+..+.|.+..+.. ...... .+ ...+.... . .....++|+++||+.|..+++... .. .+
T Consensus 70 ~~~~v~~~~g~~~~d~~--~~~~~~---~~-~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~ 143 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIK--EYANDK---VG-SSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFY 143 (357)
T ss_pred CCceEEEecCCchHHHH--Hhhhhh---cc-cCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhh
Confidence 25667777776432211 000000 00 00111111 1 123468999999999987665421 11 14
Q ss_pred CCccEEEEechhHhhhHhhhhHH--HHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEe
Q 009641 196 EHLCYLVVDETDRLLREAYQAWL--PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (530)
Q Consensus 196 ~~~~~lViDEah~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (530)
.++++|||||+|.+........+ ......+.... ...+++++|
T Consensus 144 ~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~-----------------------------------~~~~~i~lS 188 (357)
T TIGR03158 144 TKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE-----------------------------------CRRKFVFLS 188 (357)
T ss_pred cCCCEEEEecccccCcccchhhhhhhHHHHHHHhhh-----------------------------------cCCcEEEEe
Confidence 68999999999987533221111 01111110000 012789999
Q ss_pred EeecCChhhhhhhc--cCCceEEecCC--cc---c----c--------CcccceeeEeeccCCCcHHHHHHHHH------
Q 009641 274 ATLTQDPNKLAQLD--LHHPLFLTTGE--TR---Y----K--------LPERLESYKLICESKLKPLYLVALLQ------ 328 (530)
Q Consensus 274 aT~~~~~~~~~~~~--~~~~~~~~~~~--~~---~----~--------~~~~~~~~~~~~~~~~k~~~l~~~l~------ 328 (530)
||+++.+....... ...+.....+. .. + . ....+...... ....+...+..+++
T Consensus 189 AT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~ 267 (357)
T TIGR03158 189 ATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF 267 (357)
T ss_pred cCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH
Confidence 99987655544432 33333222221 00 0 0 00123332222 33333333322222
Q ss_pred -hcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEE
Q 009641 329 -SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (530)
Q Consensus 329 -~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~V 407 (530)
...++++||||+|++.++.+++.|...+ .++.+..+||.+++.+|.+. ++..|||||+++++|||+|.+ +|
T Consensus 268 ~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~v 339 (357)
T TIGR03158 268 RQLPGERGAIILDSLDEVNRLSDLLQQQG-LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WL 339 (357)
T ss_pred hccCCCeEEEEECCHHHHHHHHHHHhhhC-CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eE
Confidence 2356799999999999999999998753 23578889999999988654 478999999999999999976 56
Q ss_pred EEccCCCChhHHHHHHhhhh
Q 009641 408 VNYDKPAYIKTYIHRAGRTA 427 (530)
Q Consensus 408 I~~~~p~s~~~y~Qr~GR~g 427 (530)
| ++ |.+..+|+||+||+|
T Consensus 340 i-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 I-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred E-EC-CCCHHHHhhhcccCC
Confidence 6 45 889999999999987
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=7.6e-35 Score=264.98 Aligned_cols=339 Identities=19% Similarity=0.277 Sum_probs=251.7
Q ss_pred CCHHHHHHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 35 l~~~i~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
++.+..+.|++ |..+.++|.|..++..++. +.++++..|||.||+++|.+|++.. ...+||++|...|
T Consensus 78 ws~e~~~ilk~~f~lekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpal~a-------dg~alvi~plisl 146 (695)
T KOG0353|consen 78 WSDEAKDILKEQFHLEKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPALCA-------DGFALVICPLISL 146 (695)
T ss_pred CchHHHHHHHHHhhHHhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhHHhc-------CCceEeechhHHH
Confidence 77888888886 7889999999999877664 8999999999999999999999853 2369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh---cCCCcEEEeCChHHH------
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL---QSAVDILVATPGRLM------ 184 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ili~Tp~~l~------ 184 (530)
++++.-.++.+ |+....+...++..+...- ...+ .....+++.||+.+.
T Consensus 147 medqil~lkql----gi~as~lnansske~~k~v------------------~~~i~nkdse~kliyvtpekiaksk~~m 204 (695)
T KOG0353|consen 147 MEDQILQLKQL----GIDASMLNANSSKEEAKRV------------------EAAITNKDSEFKLIYVTPEKIAKSKKFM 204 (695)
T ss_pred HHHHHHHHHHh----CcchhhccCcccHHHHHHH------------------HHHHcCCCceeEEEEecHHHHHHHHHHH
Confidence 99888888887 5555555555443322110 0111 123589999999773
Q ss_pred HHHhcCCCCCCCCccEEEEechhHhhhHhhh--hHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCC
Q 009641 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQ--AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (530)
Q Consensus 185 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (530)
+.++ +.+....+.++.+||+|+...++.. ..... +..+.+
T Consensus 205 nkle--ka~~~~~~~~iaidevhccsqwghdfr~dy~~-l~ilkr----------------------------------- 246 (695)
T KOG0353|consen 205 NKLE--KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKA-LGILKR----------------------------------- 246 (695)
T ss_pred HHHH--HHhhcceeEEEeecceeehhhhCcccCcchHH-HHHHHH-----------------------------------
Confidence 3333 2345667999999999998776532 22111 111111
Q ss_pred CCCceeeEEEeEeecCChhhhhhhcc--CCceEEecCCccccCcccceeeEeeccCC---CcHHHHHHHHH-hcCCCcEE
Q 009641 263 PYPRLVKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVALLQ-SLGEEKCI 336 (530)
Q Consensus 263 ~~~~~~~i~~SaT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~-~~~~~~~i 336 (530)
.++...++.++||.+..+.......+ ...+.+..+..++++. |.+...+. +-.+.+..+++ ...+...|
T Consensus 247 qf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~-----yev~qkp~n~dd~~edi~k~i~~~f~gqsgi 321 (695)
T KOG0353|consen 247 QFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLK-----YEVRQKPGNEDDCIEDIAKLIKGDFAGQSGI 321 (695)
T ss_pred hCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCce-----eEeeeCCCChHHHHHHHHHHhccccCCCcce
Confidence 12344689999999888766554433 2334444444443332 22222222 33334444444 45677899
Q ss_pred EEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCCh
Q 009641 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416 (530)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~ 416 (530)
|||-+++.|+.++..|+..| +.+..||+.|.+.+|.-+-+.|..|++.|+|+|-++++|||-|++++||+..+|.|.
T Consensus 322 iyc~sq~d~ekva~alkn~g---i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksi 398 (695)
T KOG0353|consen 322 IYCFSQKDCEKVAKALKNHG---IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSI 398 (695)
T ss_pred EEEeccccHHHHHHHHHhcC---ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhH
Confidence 99999999999999999877 899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHH-------------------------------------------HHhhhhcCCCCccEEEEeecchHHHHHHHHH
Q 009641 417 KTYIH-------------------------------------------RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452 (530)
Q Consensus 417 ~~y~Q-------------------------------------------r~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~ 452 (530)
+.|.| ..||+||.+.+..|++|+.-.|.-....+..
T Consensus 399 enyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~ 477 (695)
T KOG0353|consen 399 ENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQ 477 (695)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHH
Confidence 99999 7899999999999999998887665555443
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=6.8e-33 Score=274.46 Aligned_cols=328 Identities=19% Similarity=0.243 Sum_probs=244.6
Q ss_pred HHHHHHHHCCCCccchhhHHHHHHhcCCCCCC--CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHH
Q 009641 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (530)
Q Consensus 38 ~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~ 115 (530)
.+.+.+..++| +||..|+.++.+|...+.+. .+-++++..|||||+++++.++..+.. |.++..++||.-||+
T Consensus 251 l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~----G~Q~ALMAPTEILA~ 325 (677)
T COG1200 251 LLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA----GYQAALMAPTEILAE 325 (677)
T ss_pred HHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc----CCeeEEeccHHHHHH
Confidence 45566788999 99999999999998877665 468999999999999999999988876 448999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC-CcEEEeCChHHHHHHhcCCCCC
Q 009641 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 116 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
|.++.+.++++.+|++|..++|...-..... ....+..+ .+|+|+|..-+ . ....
T Consensus 326 QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~------------------~l~~l~~G~~~ivVGTHALi----Q--d~V~ 381 (677)
T COG1200 326 QHYESLRKWLEPLGIRVALLTGSLKGKARKE------------------ILEQLASGEIDIVVGTHALI----Q--DKVE 381 (677)
T ss_pred HHHHHHHHHhhhcCCeEEEeecccchhHHHH------------------HHHHHhCCCCCEEEEcchhh----h--ccee
Confidence 9999999999999999999999987655533 23344444 89999995544 2 3466
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
+.++.++|+||-|++.-..+ ..+..-.. .....+.|||
T Consensus 382 F~~LgLVIiDEQHRFGV~QR-----~~L~~KG~-------------------------------------~~Ph~LvMTA 419 (677)
T COG1200 382 FHNLGLVIIDEQHRFGVHQR-----LALREKGE-------------------------------------QNPHVLVMTA 419 (677)
T ss_pred ecceeEEEEeccccccHHHH-----HHHHHhCC-------------------------------------CCCcEEEEeC
Confidence 88999999999999732221 11111000 0126899999
Q ss_pred eecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh--cCCCcEEEEcCChHHH-------
Q 009641 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVEST------- 345 (530)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVf~~s~~~~------- 345 (530)
||-+..-.+....--+.-++. .+|.........+-...+...+++.++. ..+.++.|.|+-+++.
T Consensus 420 TPIPRTLAlt~fgDldvS~Id------ElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~ 493 (677)
T COG1200 420 TPIPRTLALTAFGDLDVSIID------ELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQA 493 (677)
T ss_pred CCchHHHHHHHhccccchhhc------cCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhh
Confidence 997665544443322222211 1122222222223333455555555542 3678899999886654
Q ss_pred -HHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC-ChhHHHHHH
Q 009641 346 -HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRA 423 (530)
Q Consensus 346 -~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~-s~~~y~Qr~ 423 (530)
..+++.|+.. -.++++..+||+|+..++++++++|++|+.+|||||.+++.|||+|++++.|+.+.-. -..+..|-.
T Consensus 494 a~~~~~~L~~~-~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLR 572 (677)
T COG1200 494 AEELYEELKSF-LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLR 572 (677)
T ss_pred HHHHHHHHHHH-cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhc
Confidence 4556667643 2357799999999999999999999999999999999999999999999999887644 366788999
Q ss_pred hhhhcCCCCccEEEEeecch
Q 009641 424 GRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 424 GR~gR~g~~g~~i~~~~~~~ 443 (530)
||+||.+..+.|++++.+..
T Consensus 573 GRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 573 GRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cccCCCCcceEEEEEeCCCC
Confidence 99999999999999998876
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.8e-31 Score=282.01 Aligned_cols=124 Identities=20% Similarity=0.207 Sum_probs=111.9
Q ss_pred CCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcC--CccEEEEecc
Q 009641 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSDA 394 (530)
Q Consensus 317 ~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~iLVaT~~ 394 (530)
..|...|..+++...+.|+||||+++..+..+.+.|... .++.+..+||+|++.+|.++++.|+++ ...|||||++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER--EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 457778888888888899999999999999999999542 238899999999999999999999984 5999999999
Q ss_pred cccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecc
Q 009641 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (530)
Q Consensus 395 ~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~ 442 (530)
+++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++...
T Consensus 556 gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 556 GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 999999999999999999999999999999999999999877776544
No 81
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.3e-31 Score=272.89 Aligned_cols=356 Identities=19% Similarity=0.216 Sum_probs=236.2
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|.- ..+.....-|+.++||+|||++|.+|++.....+ ..++|++||++||.|.++++..+.
T Consensus 79 lg~-~~ydvQli------Gg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G----~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQLI------GGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISG----RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHHh------hhhhhccCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 675 88899954 3333455669999999999999999999777653 369999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcCCCCCC-----CCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~~~-----~~~~ 199 (530)
.++|+++++++|+.+...+... ..+||+|+||++| +++++....+++ +.+.
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~-----------------------y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~ 204 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEA-----------------------YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELN 204 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHH-----------------------hCCCEEEECChhhhHHHHhcCCccchHhhhccccc
Confidence 9999999999999876655322 3579999999999 899887433444 5899
Q ss_pred EEEEechhHhhhH----------------hhhhHHHHHHhhcccCc------cc---------ccccc-----cc-----
Q 009641 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN------EN---------RFSDA-----ST----- 238 (530)
Q Consensus 200 ~lViDEah~~~~~----------------~~~~~~~~i~~~~~~~~------~~---------~~~~~-----~~----- 238 (530)
++|+||||+++=+ .....+..+...+.... .- .+.+. ..
T Consensus 205 ~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~ 284 (896)
T PRK13104 205 FAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKA 284 (896)
T ss_pred eEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhC
Confidence 9999999997421 12223333333332210 00 00000 00
Q ss_pred -cc---cccccc------------hhhhhcccc-------------ccCCCCC----------------------CCCc-
Q 009641 239 -FL---PSAFGS------------LKTIRRCGV-------------ERGFKDK----------------------PYPR- 266 (530)
Q Consensus 239 -~~---~~~~~~------------~~~~~~~~~-------------~~~~~~~----------------------~~~~- 266 (530)
.+ ...+.. +....-+.. .+.+... .-+.
T Consensus 285 ~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~ 364 (896)
T PRK13104 285 KLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNEN 364 (896)
T ss_pred CccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCc
Confidence 00 000000 000000000 0000000 0000
Q ss_pred ---------------eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH--h
Q 009641 267 ---------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--S 329 (530)
Q Consensus 267 ---------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~ 329 (530)
.+.-.||+|......++...+--+.+.+++..... ..-..-.+......|...+...+. .
T Consensus 365 ~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~---R~d~~d~v~~t~~~k~~av~~~i~~~~ 441 (896)
T PRK13104 365 QTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMI---RKDEADLVYLTQADKFQAIIEDVRECG 441 (896)
T ss_pred eeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcc---eecCCCeEEcCHHHHHHHHHHHHHHHH
Confidence 01223444444333333333333333332221110 000111233445567776666553 3
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCC------
Q 009641 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG------ 403 (530)
Q Consensus 330 ~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~------ 403 (530)
..+.|+||||+|++.++.+++.|.+.+ ++...+|+++.+.+|..+.+.|+.| .|+|||++++||+||.=
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~g---i~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~ 516 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKEN---IKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAA 516 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcC---CCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhh
Confidence 467899999999999999999999877 8999999999999999999999999 49999999999999971
Q ss_pred --------------------------------CCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 404 --------------------------------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 404 --------------------------------~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
=-+||-...+.|..--.|-.||+||.|.+|.+-.|++-+|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 517 DLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred hhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1278888889999999999999999999999999999876
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-31 Score=267.25 Aligned_cols=296 Identities=24% Similarity=0.309 Sum_probs=204.4
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
.|++||++|+.++......++..++++|||+|||.+++..+. .+.. ++|||||+++|+.||.+.+.......
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-ELKR------STLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-HhcC------CEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 799999999999887555578899999999999998755433 3222 49999999999999998777764431
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
..++.+.|+..... . ..|.|+|.+.+...- ....+..+.+++||+|||||+
T Consensus 108 ~~~g~~~~~~~~~~---------------------------~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~ 158 (442)
T COG1061 108 DEIGIYGGGEKELE---------------------------P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHL 158 (442)
T ss_pred cccceecCceeccC---------------------------C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccC
Confidence 23444544432110 1 269999999987642 112233457999999999999
Q ss_pred hhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhh--c
Q 009641 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL--D 287 (530)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~--~ 287 (530)
....+......+.... ..+.+|||+...-...... .
T Consensus 159 ~a~~~~~~~~~~~~~~------------------------------------------~~LGLTATp~R~D~~~~~~l~~ 196 (442)
T COG1061 159 PAPSYRRILELLSAAY------------------------------------------PRLGLTATPEREDGGRIGDLFD 196 (442)
T ss_pred CcHHHHHHHHhhhccc------------------------------------------ceeeeccCceeecCCchhHHHH
Confidence 8776655544433221 1578888876332111111 1
Q ss_pred cCCceEEecCCcc-----ccCcccceee------------------------------------EeeccCCCcHHHHHHH
Q 009641 288 LHHPLFLTTGETR-----YKLPERLESY------------------------------------KLICESKLKPLYLVAL 326 (530)
Q Consensus 288 ~~~~~~~~~~~~~-----~~~~~~~~~~------------------------------------~~~~~~~~k~~~l~~~ 326 (530)
...+......... .-.+...... ........+...+...
T Consensus 197 ~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (442)
T COG1061 197 LIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGL 276 (442)
T ss_pred hcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHH
Confidence 1112222221110 0000000000 0011112233334444
Q ss_pred HHhc-CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCC
Q 009641 327 LQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405 (530)
Q Consensus 327 l~~~-~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~ 405 (530)
+... .+.+++|||.+..+++.++..+...+ . +..+.|..+..+|..+++.|+.|..++||++.++.+|+|+|+++
T Consensus 277 ~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~---~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~ 352 (442)
T COG1061 277 LLKHARGDKTLIFASDVEHAYEIAKLFLAPG---I-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDAD 352 (442)
T ss_pred HHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---c-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCc
Confidence 4433 46799999999999999999998654 3 78899999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhHHHHHHhhhhc
Q 009641 406 NVVNYDKPAYIKTYIHRAGRTAR 428 (530)
Q Consensus 406 ~VI~~~~p~s~~~y~Qr~GR~gR 428 (530)
++|...++.|...|+||+||..|
T Consensus 353 ~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 353 VLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999
No 83
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=3.1e-30 Score=272.48 Aligned_cols=335 Identities=19% Similarity=0.217 Sum_probs=210.3
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
.+|+|+|+.+... . ..+..+++.||||+|||.+++..+...+..+ ...+++|..||+++++|+++.++++....
T Consensus 285 ~~p~p~Q~~~~~~--~--~~pgl~ileApTGsGKTEAAL~~A~~l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDAL--P--LQPGLTIIEAPTGSGKTEAALAYAWRLIDQG--LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHhh--c--cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 3899999986322 1 1356799999999999999877665444332 23479999999999999999988644322
Q ss_pred --CceEEEeecCCchHHHHHHHhhcCccccCccCCc-hhHHHhhc---C---CCcEEEeCChHHHHHHhcCCCCCCCCc-
Q 009641 129 --GLSVGLAVGQSSIADEISELIKRPKLEAGICYDP-EDVLQELQ---S---AVDILVATPGRLMDHINATRGFTLEHL- 198 (530)
Q Consensus 129 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~---~~~Ili~Tp~~l~~~l~~~~~~~~~~~- 198 (530)
..++.+.+|..........+.... ......... ....+.+. + -.+|+|+|.+.++..+...+...++.+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRA-ATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhccc-ccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 357888888876554433322110 000000000 00011111 1 169999999998865544333333333
Q ss_pred ---cEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEe
Q 009641 199 ---CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (530)
Q Consensus 199 ---~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 275 (530)
++|||||+|.+ +..+...+..++..+.... ..+|++|||
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g-------------------------------------~~vIllSAT 479 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAG-------------------------------------GSVILLSAT 479 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcC-------------------------------------CcEEEEeCC
Confidence 48999999987 4444555666665543211 158999999
Q ss_pred ecCChhh-hhhhccCC---------ceEEecC---CccccCcc-----cce-eeEe--e-ccC-CCcHHHHHHHHHh-cC
Q 009641 276 LTQDPNK-LAQLDLHH---------PLFLTTG---ETRYKLPE-----RLE-SYKL--I-CES-KLKPLYLVALLQS-LG 331 (530)
Q Consensus 276 ~~~~~~~-~~~~~~~~---------~~~~~~~---~~~~~~~~-----~~~-~~~~--~-~~~-~~k~~~l~~~l~~-~~ 331 (530)
++..... +...+-.. |.+.... ........ ... .... . ... ......+..+++. ..
T Consensus 480 LP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~ 559 (878)
T PRK09694 480 LPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANA 559 (878)
T ss_pred CCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 9876543 22221110 1100000 00000000 000 0000 0 011 1112333334433 35
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHH----HHHHHH-hcCC---ccEEEEecccccCCCCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS----KTLKAF-REGK---IQVLVSSDAMTRGMDVEG 403 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~----~~~~~f-~~g~---~~iLVaT~~~~~GiDip~ 403 (530)
+++++|||||++.|+.+++.|++.......+..+||+++..+|. ++++.| ++|+ ..|||||+++++|+|++
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId- 638 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD- 638 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-
Confidence 67899999999999999999987543346789999999999994 567788 5665 47999999999999995
Q ss_pred CCEEEEccCCCChhHHHHHHhhhhcCCC
Q 009641 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (530)
Q Consensus 404 ~~~VI~~~~p~s~~~y~Qr~GR~gR~g~ 431 (530)
++++|....| .+.++||+||++|.++
T Consensus 639 ~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 639 FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 8999988777 7899999999999876
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.2e-30 Score=273.90 Aligned_cols=320 Identities=20% Similarity=0.237 Sum_probs=210.2
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
.|++.|++|++.+.... .++++++.||||||||.+|+.++.+.+.. +.++||++|+++|+.|+.+.+++.+ +
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----g~~vLvLvPt~~L~~Q~~~~l~~~f---g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----GKQALVLVPEIALTPQMLARFRARF---G 215 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---C
Confidence 69999999999887643 35789999999999999998887777654 3479999999999999999998753 5
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
..+..++|+.+..+... .|..+. ..++|+|+|++.++ ..+.++++||+||+|.
T Consensus 216 ~~v~~~~s~~s~~~r~~------------------~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 216 APVAVLHSGLSDGERLD------------------EWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred CCEEEEECCCCHHHHHH------------------HHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCc
Confidence 78899999887665532 233333 45799999998763 3467899999999997
Q ss_pred hhhHhhh---hHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhh
Q 009641 209 LLREAYQ---AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (530)
Q Consensus 209 ~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 285 (530)
..-.... -+...+..... .....+++++|||++........
T Consensus 270 ~s~~~~~~p~y~~r~va~~ra------------------------------------~~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 270 SSYKQQEGPRYHARDLAVVRA------------------------------------KLENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred cccccCcCCCCcHHHHHHHHh------------------------------------hccCCCEEEEcCCCCHHHHHHHh
Confidence 5321100 01111111100 01223789999997543332222
Q ss_pred hccCCceEEecCCc--cccCcccceeeEeec---c-C-CCcHHHHHHHHH-hc-CCCcEEEEcCCh--------------
Q 009641 286 LDLHHPLFLTTGET--RYKLPERLESYKLIC---E-S-KLKPLYLVALLQ-SL-GEEKCIVFTSSV-------------- 342 (530)
Q Consensus 286 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~-~-~~k~~~l~~~l~-~~-~~~~~iVf~~s~-------------- 342 (530)
.. ....+..... ....+. +....... . . ..-...+...++ .. .+.++|||+|++
T Consensus 314 ~g--~~~~~~l~~r~~~~~~p~-v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~ 390 (679)
T PRK05580 314 QG--RYRLLRLTKRAGGARLPE-VEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWV 390 (679)
T ss_pred cc--ceeEEEeccccccCCCCe-EEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCc
Confidence 11 1111111111 111110 00000000 0 0 001122333333 22 355888887752
Q ss_pred ----------------------------------------------HHHHHHHHHHHhcCCCcceEEEccccCC--HHHH
Q 009641 343 ----------------------------------------------ESTHRLCTLLNHFGELRIKIKEYSGLQR--QSVR 374 (530)
Q Consensus 343 ----------------------------------------------~~~~~l~~~L~~~~~~~~~v~~~h~~~~--~~~R 374 (530)
..++.+++.|.+.. .+.++..+|+++. +.++
T Consensus 391 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f-p~~~v~~~~~d~~~~~~~~ 469 (679)
T PRK05580 391 AECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF-PEARILRIDRDTTRRKGAL 469 (679)
T ss_pred cCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-CCCcEEEEeccccccchhH
Confidence 14556677776642 2367889999986 4678
Q ss_pred HHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC--CCC----------hhHHHHHHhhhhcCCCCccEEEEeecc
Q 009641 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK--PAY----------IKTYIHRAGRTARAGQLGRCFTLLHKD 442 (530)
Q Consensus 375 ~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~--p~s----------~~~y~Qr~GR~gR~g~~g~~i~~~~~~ 442 (530)
++++++|++|+.+|||+|+++++|+|+|++++|+.+|. +-+ ...|.|++||+||.+..|.+++.....
T Consensus 470 ~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 470 EQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999865543 322 357899999999999999999766544
Q ss_pred h
Q 009641 443 E 443 (530)
Q Consensus 443 ~ 443 (530)
+
T Consensus 550 ~ 550 (679)
T PRK05580 550 E 550 (679)
T ss_pred C
Confidence 3
No 85
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.5e-31 Score=272.41 Aligned_cols=358 Identities=20% Similarity=0.237 Sum_probs=254.5
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC-------CcccEEE
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-------RCLRALV 106 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~-------~~~~~li 106 (530)
.+|.+-+.++. |...++.+|..+.++.+. ...+++++||||+|||-++++.+++.+..+.. ...+++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~---~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVY 369 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALR---GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVY 369 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhc---CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEE
Confidence 35555555554 555799999997666543 34789999999999999999999999987643 2348999
Q ss_pred EcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHH
Q 009641 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (530)
Q Consensus 107 l~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~ 186 (530)
++|.++|++.+...+.+.....|++|.-.+|+.....+.- .+..|+|+||+..--.
T Consensus 370 IAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi------------------------eeTqVIV~TPEK~DiI 425 (1674)
T KOG0951|consen 370 IAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI------------------------EETQVIVTTPEKWDII 425 (1674)
T ss_pred EeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh------------------------hcceeEEeccchhhhh
Confidence 9999999999999999988889999999999987554421 3459999999997544
Q ss_pred HhcCCCCC-CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCC
Q 009641 187 INATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (530)
Q Consensus 187 l~~~~~~~-~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (530)
-++.+... .+-++++|+||.|. +.+.++..++.|...+..... ....
T Consensus 426 TRk~gdraY~qlvrLlIIDEIHL-LhDdRGpvLESIVaRt~r~se-------------------------------s~~e 473 (1674)
T KOG0951|consen 426 TRKSGDRAYEQLVRLLIIDEIHL-LHDDRGPVLESIVARTFRRSE-------------------------------STEE 473 (1674)
T ss_pred hcccCchhHHHHHHHHhhhhhhh-cccccchHHHHHHHHHHHHhh-------------------------------hccc
Confidence 44432221 34589999999995 466778888888776543211 0112
Q ss_pred ceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEee--ccCCCcH------HHHHHHHHhcCCCcEEE
Q 009641 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI--CESKLKP------LYLVALLQSLGEEKCIV 337 (530)
Q Consensus 266 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~k~------~~l~~~l~~~~~~~~iV 337 (530)
..+.+.+|||+|+-..--.-+....+-.+..+....+. .+.+.++- .....+. .....+++....+++||
T Consensus 474 ~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpv--PL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLV 551 (1674)
T KOG0951|consen 474 GSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPV--PLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLV 551 (1674)
T ss_pred CceeeeecccCCchhhhHHHhccCcccccccCcccCcC--CccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 33689999999865433221111122222222222222 23333322 2222222 23344566677799999
Q ss_pred EcCChHHHHHHHHHHHhc-------------C---------------------CCcceEEEccccCCHHHHHHHHHHHhc
Q 009641 338 FTSSVESTHRLCTLLNHF-------------G---------------------ELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (530)
Q Consensus 338 f~~s~~~~~~l~~~L~~~-------------~---------------------~~~~~v~~~h~~~~~~~R~~~~~~f~~ 383 (530)
|+.+++++-+.|+.++.. + -+.++++.+|+||+..+|....+.|+.
T Consensus 552 FVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~ 631 (1674)
T KOG0951|consen 552 FVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD 631 (1674)
T ss_pred EEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc
Confidence 999999988888877520 0 045689999999999999999999999
Q ss_pred CCccEEEEecccccCCCCCCCCEEEE----ccC------CCChhHHHHHHhhhhcCCCC--ccEEEEeecchHHHHHHHH
Q 009641 384 GKIQVLVSSDAMTRGMDVEGVNNVVN----YDK------PAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLL 451 (530)
Q Consensus 384 g~~~iLVaT~~~~~GiDip~~~~VI~----~~~------p~s~~~y~Qr~GR~gR~g~~--g~~i~~~~~~~~~~~~~~~ 451 (530)
|+++|+|+|.++++|+|+|..+++|- ||+ +.++.+.+||.||+||.+-+ |.+++.-...+...+..++
T Consensus 632 g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~m 711 (1674)
T KOG0951|consen 632 GHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLM 711 (1674)
T ss_pred CceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhh
Confidence 99999999999999999997655543 443 34688999999999997654 7788777777877777766
Q ss_pred HHh
Q 009641 452 QKA 454 (530)
Q Consensus 452 ~~~ 454 (530)
++.
T Consensus 712 n~q 714 (1674)
T KOG0951|consen 712 NQQ 714 (1674)
T ss_pred hhc
Confidence 554
No 86
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.8e-31 Score=285.64 Aligned_cols=299 Identities=19% Similarity=0.269 Sum_probs=198.7
Q ss_pred hcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC----cHHHHHHHHHHHHH-hccccCceEEEee
Q 009641 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP----TRDLALQVKDVFAA-IAPAVGLSVGLAV 136 (530)
Q Consensus 62 ~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P----t~~L~~Q~~~~l~~-~~~~~~~~v~~~~ 136 (530)
++..+..++.+++.|+||||||. .+|.+..-.... ....+++.-| +++||.|+++++.. ++...|..+
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g-~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v---- 154 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRG-VKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV---- 154 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCC-CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee----
Confidence 34444456678899999999998 467432211111 1112223336 46777777777764 322222211
Q ss_pred cCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechh-HhhhHhhh
Q 009641 137 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD-RLLREAYQ 215 (530)
Q Consensus 137 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~ 215 (530)
. ..+ ....+++|+|+||++|++.+... ..++++++||||||| ++++.++.
T Consensus 155 r---f~~------------------------~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfL 205 (1294)
T PRK11131 155 R---FND------------------------QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFI 205 (1294)
T ss_pred c---Ccc------------------------ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchH
Confidence 1 000 11245799999999999998763 348899999999999 46666553
Q ss_pred h-HHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEE
Q 009641 216 A-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294 (530)
Q Consensus 216 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 294 (530)
- .+..++ +. .+..++|++|||+. ...+...+...|++
T Consensus 206 Lg~Lk~lL---~~------------------------------------rpdlKvILmSATid--~e~fs~~F~~apvI- 243 (1294)
T PRK11131 206 LGYLKELL---PR------------------------------------RPDLKVIITSATID--PERFSRHFNNAPII- 243 (1294)
T ss_pred HHHHHHhh---hc------------------------------------CCCceEEEeeCCCC--HHHHHHHcCCCCEE-
Confidence 2 122222 11 02348999999995 44566555555543
Q ss_pred ecCCccccCcccceeeEeeccCCC---cHHHHHHHH------HhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEc
Q 009641 295 TTGETRYKLPERLESYKLICESKL---KPLYLVALL------QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (530)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~l------~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~ 365 (530)
.+....++ +..++....... +...+..++ .....+.+|||+++..+++.+++.|...+.....+..+
T Consensus 244 ~V~Gr~~p----Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpL 319 (1294)
T PRK11131 244 EVSGRTYP----VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPL 319 (1294)
T ss_pred EEcCcccc----ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeec
Confidence 33222221 233333322111 222222222 22356789999999999999999998765334567889
Q ss_pred cccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC---------------C---CChhHHHHHHhhhh
Q 009641 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------------P---AYIKTYIHRAGRTA 427 (530)
Q Consensus 366 h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~---------------p---~s~~~y~Qr~GR~g 427 (530)
||++++.+|..+++. .|..+|||||+++++|||||++++||+++. | .|..+|.||.||+|
T Consensus 320 hg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAG 397 (1294)
T PRK11131 320 YARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 397 (1294)
T ss_pred ccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccC
Confidence 999999999999886 478899999999999999999999999863 3 35578999999999
Q ss_pred cCCCCccEEEEeecchHH
Q 009641 428 RAGQLGRCFTLLHKDEVK 445 (530)
Q Consensus 428 R~g~~g~~i~~~~~~~~~ 445 (530)
|. .+|.|+.++++++..
T Consensus 398 R~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 398 RV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred CC-CCcEEEEeCCHHHHH
Confidence 99 699999999987654
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=5.1e-31 Score=265.00 Aligned_cols=373 Identities=18% Similarity=0.186 Sum_probs=258.1
Q ss_pred HHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHH
Q 009641 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (530)
Q Consensus 41 ~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (530)
+....++| +|-.+|++|+..+. +|.+++|.|+|.+|||+++-.++.-.-. .+.+++|-+|-++|-+|-++.
T Consensus 289 e~a~~~pF-elD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAialaq~----h~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 289 EMALIYPF-ELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALAQK----HMTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred hHHhhCCC-CccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHHHh----hccceEecchhhhhccchHHH
Confidence 34446788 99999999976643 5899999999999999997766543333 355899999999999999999
Q ss_pred HHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccE
Q 009641 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200 (530)
Q Consensus 121 l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~ 200 (530)
++.-.... ++++|+..+. +.+.++|+|-+.|.+++-++ .--++++.+
T Consensus 360 Fk~tF~Dv----gLlTGDvqin----------------------------PeAsCLIMTTEILRsMLYrg-adliRDvE~ 406 (1248)
T KOG0947|consen 360 FKETFGDV----GLLTGDVQIN----------------------------PEASCLIMTTEILRSMLYRG-ADLIRDVEF 406 (1248)
T ss_pred HHHhcccc----ceeecceeeC----------------------------CCcceEeehHHHHHHHHhcc-cchhhccce
Confidence 98876543 4788887643 44589999999999999884 344778999
Q ss_pred EEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCCh
Q 009641 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (530)
Q Consensus 201 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 280 (530)
|||||+|.+.+..++...+.++-++|. .+++|++|||.++..
T Consensus 407 VIFDEVHYiND~eRGvVWEEViIMlP~--------------------------------------HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 407 VIFDEVHYINDVERGVVWEEVIIMLPR--------------------------------------HVNFILLSATVPNTL 448 (1248)
T ss_pred EEEeeeeecccccccccceeeeeeccc--------------------------------------cceEEEEeccCCChH
Confidence 999999999888888888888776653 447899999998665
Q ss_pred hhhhh--hccCCceEEecCCccccCcccceeeEe----------------------------------------------
Q 009641 281 NKLAQ--LDLHHPLFLTTGETRYKLPERLESYKL---------------------------------------------- 312 (530)
Q Consensus 281 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 312 (530)
+..-+ ......+.+.....+ + -.++++.+
T Consensus 449 EFA~WIGRtK~K~IyViST~kR-P--VPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rg 525 (1248)
T KOG0947|consen 449 EFADWIGRTKQKTIYVISTSKR-P--VPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRG 525 (1248)
T ss_pred HHHHHhhhccCceEEEEecCCC-c--cceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccccc
Confidence 43222 111111111111000 0 00000000
Q ss_pred -------------------eccCCC---cHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCC-------------
Q 009641 313 -------------------ICESKL---KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE------------- 357 (530)
Q Consensus 313 -------------------~~~~~~---k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~------------- 357 (530)
...... ....+...++...--|+||||-+++.|+..+++|....-
T Consensus 526 s~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl 605 (1248)
T KOG0947|consen 526 SQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFL 605 (1248)
T ss_pred ccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHH
Confidence 000011 133445555555667999999999999999999964321
Q ss_pred -----------------------CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC
Q 009641 358 -----------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414 (530)
Q Consensus 358 -----------------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~ 414 (530)
+..+++++||++-+-.++-+.--|..|-++||+||.++++|||.|. ++||+-.+.+
T Consensus 606 ~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA-RtvVF~Sl~K 684 (1248)
T KOG0947|consen 606 SKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA-RTVVFSSLRK 684 (1248)
T ss_pred HHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc-eeEEeeehhh
Confidence 1237889999999999999999999999999999999999999995 5566544332
Q ss_pred ---------ChhHHHHHHhhhhcCCCC--ccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHHhhhHHHHHHHHhcc
Q 009641 415 ---------YIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483 (530)
Q Consensus 415 ---------s~~~y~Qr~GR~gR~g~~--g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (530)
.+.+|.||.|||||.|-+ |.+++++... .+....+.+-. ..-+..+...|+-.|..++.-+
T Consensus 685 hDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~li-------~G~~~~L~SQFRlTY~MILnLL 756 (1248)
T KOG0947|consen 685 HDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRLI-------MGGPTRLESQFRLTYGMILNLL 756 (1248)
T ss_pred ccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhHh-------cCCCchhhhhhhhHHHHHHHHH
Confidence 477999999999999866 7777666554 23233332222 2234455666788888888777
Q ss_pred chhhhhhhhccccCCCcccchhhcccccc
Q 009641 484 SDEAFWKVGCDLHGVNRVRRSFYQTSGDR 512 (530)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (530)
..+....+-. +++||-+....+
T Consensus 757 Rve~lrvEdm-------~krSf~E~~s~~ 778 (1248)
T KOG0947|consen 757 RVEALRVEDM-------MKRSFSEFVSQR 778 (1248)
T ss_pred HHHHHHHHHH-------HHHHhhhhhhhh
Confidence 7665443322 345555544444
No 88
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.5e-31 Score=260.98 Aligned_cols=369 Identities=19% Similarity=0.211 Sum_probs=251.0
Q ss_pred HHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
+...| ++-|+|..|+..+ -++.+++++|.|.+|||.++-.++...+... .+|||-+|-++|.+|-++++..
T Consensus 124 k~YPF-~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k----QRVIYTSPIKALSNQKYREl~~ 194 (1041)
T KOG0948|consen 124 KTYPF-TLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK----QRVIYTSPIKALSNQKYRELLE 194 (1041)
T ss_pred cCCCc-ccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc----CeEEeeChhhhhcchhHHHHHH
Confidence 34566 8999999986543 3578999999999999999988888888763 3899999999999999998877
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEE
Q 009641 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
-++ .|++.+|+..+. +.+..+|+|-+.|.+++-++ .--++.+.+|||
T Consensus 195 EF~----DVGLMTGDVTIn----------------------------P~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIF 241 (1041)
T KOG0948|consen 195 EFK----DVGLMTGDVTIN----------------------------PDASCLVMTTEILRSMLYRG-SEVMREVAWVIF 241 (1041)
T ss_pred Hhc----ccceeecceeeC----------------------------CCCceeeeHHHHHHHHHhcc-chHhheeeeEEe
Confidence 544 467788876533 45689999999999999874 344788999999
Q ss_pred echhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhh
Q 009641 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283 (530)
Q Consensus 204 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 283 (530)
||+|.|-+..++-.++.-+-.++ +.++.+++|||.|+..+..
T Consensus 242 DEIHYMRDkERGVVWEETIIllP--------------------------------------~~vr~VFLSATiPNA~qFA 283 (1041)
T KOG0948|consen 242 DEIHYMRDKERGVVWEETIILLP--------------------------------------DNVRFVFLSATIPNARQFA 283 (1041)
T ss_pred eeehhccccccceeeeeeEEecc--------------------------------------ccceEEEEeccCCCHHHHH
Confidence 99999977666544443333332 3447899999998665442
Q ss_pred hh--hccCCceEEe-cCCccccCcccceee---------EeeccCCC---------------------------------
Q 009641 284 AQ--LDLHHPLFLT-TGETRYKLPERLESY---------KLICESKL--------------------------------- 318 (530)
Q Consensus 284 ~~--~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~--------------------------------- 318 (530)
.+ .....|..+. +.... ..+++| +...+.+.
T Consensus 284 eWI~~ihkQPcHVVYTdyRP----TPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG 359 (1041)
T KOG0948|consen 284 EWICHIHKQPCHVVYTDYRP----TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKG 359 (1041)
T ss_pred HHHHHHhcCCceEEeecCCC----CcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccC
Confidence 22 2233443332 22221 122222 11111111
Q ss_pred ----------cHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCC-------------------------------
Q 009641 319 ----------KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE------------------------------- 357 (530)
Q Consensus 319 ----------k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~------------------------------- 357 (530)
....+...+-.....++|||+-++++|+.++-.+.+..-
T Consensus 360 ~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie 439 (1041)
T KOG0948|consen 360 GTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIE 439 (1041)
T ss_pred CcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHH
Confidence 011222222233457999999999999999988854310
Q ss_pred -----CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC---------CChhHHHHHH
Q 009641 358 -----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRA 423 (530)
Q Consensus 358 -----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p---------~s~~~y~Qr~ 423 (530)
+..++.++|||+-+--++-+.=.|++|-+++|.||.+++.|+|.|. ..|++...- -|...|+||.
T Consensus 440 ~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA-kTVvFT~~rKfDG~~fRwissGEYIQMS 518 (1041)
T KOG0948|consen 440 NILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA-KTVVFTAVRKFDGKKFRWISSGEYIQMS 518 (1041)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc-eeEEEeeccccCCcceeeecccceEEec
Confidence 2237889999999999998988999999999999999999999995 556664432 2456899999
Q ss_pred hhhhcCCCC--ccEEEEeecc-hHHHHHHHHHHhcCCCCCCcCCChhHHhhhHHHHHHHHhccchhhhhhhhccccCCCc
Q 009641 424 GRTARAGQL--GRCFTLLHKD-EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRGGISDEAFWKVGCDLHGVNR 500 (530)
Q Consensus 424 GR~gR~g~~--g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (530)
|||||.|.+ |.++++++.. +....+.+++.. +..+...|.-.|..+++-+.-|+..-...
T Consensus 519 GRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~----------aD~LnSaFhLtYnMiLNLlRvEei~pe~~------- 581 (1041)
T KOG0948|consen 519 GRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGS----------ADPLNSAFHLTYNMILNLLRVEEISPEYM------- 581 (1041)
T ss_pred ccccccCCCCCceEEEEecCcCCHHHHHHHhcCC----------CcchhhhhhhHHHHHHHHHHHccCCHHHH-------
Confidence 999999977 6666666654 223333333221 12233345556666666665554444333
Q ss_pred ccchhhcccccccc
Q 009641 501 VRRSFYQTSGDRAL 514 (530)
Q Consensus 501 ~~~~~~~~~~~~~~ 514 (530)
.++||||.+..++.
T Consensus 582 l~~SF~QFQ~~~~~ 595 (1041)
T KOG0948|consen 582 LERSFHQFQNYKAL 595 (1041)
T ss_pred HHHHHHHHhhhhhc
Confidence 45666666665554
No 89
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.9e-30 Score=265.73 Aligned_cols=356 Identities=19% Similarity=0.191 Sum_probs=237.8
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|.-..-. ..+.-|+.++||+|||+++.+|++-....+ ..+-|++||..||.|.++++..+.
T Consensus 78 lg~-~~~dvQlig~l~------L~~G~Iaem~TGeGKTLva~lpa~l~aL~G----~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMV------LHEGKIAEMKTGEGKTLVATLPAYLNALTG----KGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHH------hcCCchhhhhcCCCcHHHHHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHH
Confidence 786 899999765321 233459999999999999999996333332 258899999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcCCC-----CCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (530)
.++|++++++.|+.+..++... ..++|+|+||.+| +++++.... ...+.+.
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~-----------------------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~ 203 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREA-----------------------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLN 203 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHh-----------------------cCCCeEEECCcchhhhhhhcccccchhhhcccccc
Confidence 9999999999999877665432 3479999999999 888876432 2367799
Q ss_pred EEEEechhHhhhH----------------hhhhHHHHHHhhcccCcccccccc--------------------cccc---
Q 009641 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNENRFSDA--------------------STFL--- 240 (530)
Q Consensus 200 ~lViDEah~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~--- 240 (530)
++|+||||+|+=+ .....+..+...+.....-...+- ....
T Consensus 204 ~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~ 283 (830)
T PRK12904 204 YAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPE 283 (830)
T ss_pred eEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChh
Confidence 9999999997411 122333333333321100000000 0000
Q ss_pred --------cccccchhhhhc-----------------ccc-------ccC------CCC--CCCCc--------------
Q 009641 241 --------PSAFGSLKTIRR-----------------CGV-------ERG------FKD--KPYPR-------------- 266 (530)
Q Consensus 241 --------~~~~~~~~~~~~-----------------~~~-------~~~------~~~--~~~~~-------------- 266 (530)
..++.....+.+ ++. ..+ .++ ..-+.
T Consensus 284 ~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr 363 (830)
T PRK12904 284 NIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFR 363 (830)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHH
Confidence 000000000000 000 000 000 00000
Q ss_pred --eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh--cCCCcEEEEcCCh
Q 009641 267 --LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (530)
Q Consensus 267 --~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVf~~s~ 342 (530)
.....||+|......++...+--+.+.+++.... . ..-..-.+......|...+...+.. ..+.|+||||+|+
T Consensus 364 ~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~--~-r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si 440 (830)
T PRK12904 364 MYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPM--I-RIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSI 440 (830)
T ss_pred hcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCe--e-eeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 0133455555444444444443333333332211 0 0011122334455688888887754 5678999999999
Q ss_pred HHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCC------------------
Q 009641 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV------------------ 404 (530)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~------------------ 404 (530)
+.++.+++.|...+ ++...+||. +.+|+..+..|+.+...|+|||++++||+||+--
T Consensus 441 ~~se~Ls~~L~~~g---i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~ 515 (830)
T PRK12904 441 EKSELLSKLLKKAG---IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQ 515 (830)
T ss_pred HHHHHHHHHHHHCC---CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHH
Confidence 99999999999876 889999995 7889999999999999999999999999999832
Q ss_pred --------------------CEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 405 --------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 405 --------------------~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
-+||....|.|..--.|-.||+||.|.+|.+-.|++-+|
T Consensus 516 ~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 516 IAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 178999999999999999999999999999999999876
No 90
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.4e-30 Score=268.38 Aligned_cols=361 Identities=20% Similarity=0.202 Sum_probs=251.0
Q ss_pred HHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH
Q 009641 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (530)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (530)
......+|| .|-++|++|+..+- ++.+++++||||+|||.+.-.++...+.. +.+++|.+|.++|.+|.++
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~----~qrviYTsPIKALsNQKyr 180 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRD----GQRVIYTSPIKALSNQKYR 180 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHc----CCceEeccchhhhhhhHHH
Confidence 445567899 99999999976543 58999999999999999988877766665 3369999999999999999
Q ss_pred HHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCcc
Q 009641 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (530)
Q Consensus 120 ~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~ 199 (530)
.+........--+++++|+.+.. ..+.++|+|-+.|.+++.+ +...+..+.
T Consensus 181 dl~~~fgdv~~~vGL~TGDv~IN----------------------------~~A~clvMTTEILRnMlyr-g~~~~~~i~ 231 (1041)
T COG4581 181 DLLAKFGDVADMVGLMTGDVSIN----------------------------PDAPCLVMTTEILRNMLYR-GSESLRDIE 231 (1041)
T ss_pred HHHHHhhhhhhhccceecceeeC----------------------------CCCceEEeeHHHHHHHhcc-Ccccccccc
Confidence 88776443223457888877533 4568999999999999988 456788999
Q ss_pred EEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCC
Q 009641 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (530)
Q Consensus 200 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 279 (530)
.|||||+|.|.+...+-..+.++-+++. .++++++|||.++.
T Consensus 232 ~ViFDEvHyi~D~eRG~VWEE~Ii~lP~--------------------------------------~v~~v~LSATv~N~ 273 (1041)
T COG4581 232 WVVFDEVHYIGDRERGVVWEEVIILLPD--------------------------------------HVRFVFLSATVPNA 273 (1041)
T ss_pred eEEEEeeeeccccccchhHHHHHHhcCC--------------------------------------CCcEEEEeCCCCCH
Confidence 9999999999998888888888877663 34799999999866
Q ss_pred hhhhhhhc--cCCceEEecCCccccCcccceeeEeec-------cCC---------------------------------
Q 009641 280 PNKLAQLD--LHHPLFLTTGETRYKLPERLESYKLIC-------ESK--------------------------------- 317 (530)
Q Consensus 280 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--------------------------------- 317 (530)
.+.-.+.. -..+..+.....+ +..+++++... +..
T Consensus 274 ~EF~~Wi~~~~~~~~~vv~t~~R---pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 350 (1041)
T COG4581 274 EEFAEWIQRVHSQPIHVVSTEHR---PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRY 350 (1041)
T ss_pred HHHHHHHHhccCCCeEEEeecCC---CCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccc
Confidence 54433322 2333333222211 01111111100 000
Q ss_pred --------------CcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCC--------------------------
Q 009641 318 --------------LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-------------------------- 357 (530)
Q Consensus 318 --------------~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~-------------------------- 357 (530)
.+...+...+.....-++|+|+-++..|+..+..+.....
T Consensus 351 a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~ 430 (1041)
T COG4581 351 ARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDR 430 (1041)
T ss_pred cccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhh
Confidence 0112233344444556999999999999999888752100
Q ss_pred ------------CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC---------CCh
Q 009641 358 ------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYI 416 (530)
Q Consensus 358 ------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p---------~s~ 416 (530)
+.-.++++|++|-+..|..+...|..|-.+|+++|.+++.|+|.|. +.|+..... -++
T Consensus 431 ~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K~dG~~~r~L~~ 509 (1041)
T COG4581 431 ELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFTSLSKFDGNGHRWLSP 509 (1041)
T ss_pred cCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeeeeeEEecCCceeecCh
Confidence 1124568999999999999999999999999999999999999994 556654432 368
Q ss_pred hHHHHHHhhhhcCCCC--ccEEEEeecchHHHHHHHHHHhcCCCCCCcCCChhHHhhhHHHHHHHHhccchhhh
Q 009641 417 KTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRGGISDEAF 488 (530)
Q Consensus 417 ~~y~Qr~GR~gR~g~~--g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (530)
..|.|+.|||||.|.+ |.+++...+.... ....-... ...+..+...|...|...++-+..+..
T Consensus 510 gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~-~~e~~~l~-------~~~~~~L~s~f~~sy~milnll~v~~l 575 (1041)
T COG4581 510 GEYTQMSGRAGRRGLDVLGTVIVIEPPFESE-PSEAAGLA-------SGKLDPLRSQFRLSYNMILNLLRVEGL 575 (1041)
T ss_pred hHHHHhhhhhccccccccceEEEecCCCCCC-hHHHHHhh-------cCCCccchhheecchhHHHhhhhhccc
Confidence 8999999999999988 6666665554332 12111111 122344445566666666655554433
No 91
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=4.2e-29 Score=261.19 Aligned_cols=327 Identities=17% Similarity=0.203 Sum_probs=250.8
Q ss_pred CHHHHHHHH-HCCCCccchhhHHHHHHhcCCCCCC--CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 36 DPRLKVALQ-NMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 36 ~~~i~~~l~-~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
+......+. .|+| .-||-|..||+++...+.++ .|-+|||..|-|||.+++=+++..+..+ .+|.|+|||.-
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----KQVAvLVPTTl 654 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----KQVAVLVPTTL 654 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC----CeEEEEcccHH
Confidence 334444443 4898 88999999999998877766 5899999999999999988888877654 58999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHHHhcCC
Q 009641 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATR 191 (530)
Q Consensus 113 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~ 191 (530)
||+|.++.+++.....+++|..+.--.+..++... ...+. ...||+|||.. +|. +
T Consensus 655 LA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~i------------------l~~la~G~vDIvIGTHr----LL~--k 710 (1139)
T COG1197 655 LAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEI------------------LKGLAEGKVDIVIGTHR----LLS--K 710 (1139)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHH------------------HHHHhcCCccEEEechH----hhC--C
Confidence 99999999999999889999988877766655332 23333 45899999943 443 4
Q ss_pred CCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 009641 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (530)
Q Consensus 192 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (530)
.+.+.+++++||||-|++. -...+.++.+-. .+.++-
T Consensus 711 dv~FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr~------------------------------------------~VDvLT 747 (1139)
T COG1197 711 DVKFKDLGLLIIDEEQRFG-VKHKEKLKELRA------------------------------------------NVDVLT 747 (1139)
T ss_pred CcEEecCCeEEEechhhcC-ccHHHHHHHHhc------------------------------------------cCcEEE
Confidence 5778899999999999972 222233333322 235788
Q ss_pred EeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHH-HHH-hcCCCcEEEEcCChHHHHHHH
Q 009641 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQ-SLGEEKCIVFTSSVESTHRLC 349 (530)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~l~-~~~~~~~iVf~~s~~~~~~l~ 349 (530)
+||||-+..-.+.-..+++.-++.+.+.. ...++.+....++ ..+.+ +++ -..++++-..+|.++..+.++
T Consensus 748 LSATPIPRTL~Msm~GiRdlSvI~TPP~~---R~pV~T~V~~~d~----~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~ 820 (1139)
T COG1197 748 LSATPIPRTLNMSLSGIRDLSVIATPPED---RLPVKTFVSEYDD----LLIREAILRELLRGGQVFYVHNRVESIEKKA 820 (1139)
T ss_pred eeCCCCcchHHHHHhcchhhhhccCCCCC---CcceEEEEecCCh----HHHHHHHHHHHhcCCEEEEEecchhhHHHHH
Confidence 99999888877777777776666554322 1122222222121 12222 222 235789999999999999999
Q ss_pred HHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC-ChhHHHHHHhhhhc
Q 009641 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTAR 428 (530)
Q Consensus 350 ~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~-s~~~y~Qr~GR~gR 428 (530)
+.|++.- ...++.+.||.|+..+-++++..|.+|+.+|||||.+++-|||||+++++|.-+.-. -..+..|-.||+||
T Consensus 821 ~~L~~LV-PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGR 899 (1139)
T COG1197 821 ERLRELV-PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGR 899 (1139)
T ss_pred HHHHHhC-CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCC
Confidence 9998863 346789999999999999999999999999999999999999999999998866543 37789999999999
Q ss_pred CCCCccEEEEeecc
Q 009641 429 AGQLGRCFTLLHKD 442 (530)
Q Consensus 429 ~g~~g~~i~~~~~~ 442 (530)
..+.+.|+.++.+.
T Consensus 900 S~~~AYAYfl~p~~ 913 (1139)
T COG1197 900 SNKQAYAYFLYPPQ 913 (1139)
T ss_pred ccceEEEEEeecCc
Confidence 99999999999875
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=9.3e-30 Score=261.92 Aligned_cols=356 Identities=20% Similarity=0.255 Sum_probs=229.7
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|++.|.-+--. + ...-|+.+.||+|||+++.+|++-....+ ..+-|++||.-||.|-++++..+.
T Consensus 77 ~g~-~~~dvQlig~l~-l-----~~G~iaEm~TGEGKTLvA~l~a~l~al~G----~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIV-L-----HEGNIAEMKTGEGKTLTATLPVYLNALTG----KGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHH-H-----hcCCcccccCCCCCcHHHHHHHHHHHHcC----CCeEEEeccHHHHHhhHHHHHHHH
Confidence 686 899999765322 1 23349999999999999999988777664 479999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcC-----CCCCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~-----~~~~~~~~~ 199 (530)
.++|++++++.|+.+..+.... ..+||+++|...| ++.|+.. .....+.+.
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~-----------------------y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~ 202 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAA-----------------------YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLN 202 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHH-----------------------hcCCCeecCCccccccchhhccccchhhhhccCcc
Confidence 9999999999998766554332 4569999999766 3344331 111245688
Q ss_pred EEEEechhHhhhH----------------hhhhHHHHHHhhcccCcc---------cccc--ccc--------------c
Q 009641 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNE---------NRFS--DAS--------------T 238 (530)
Q Consensus 200 ~lViDEah~~~~~----------------~~~~~~~~i~~~~~~~~~---------~~~~--~~~--------------~ 238 (530)
+.||||+|.++=+ .....+..+...+..... ..+. ... .
T Consensus 203 ~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~ 282 (796)
T PRK12906 203 YAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEK 282 (796)
T ss_pred eeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHH
Confidence 9999999986311 122223333332221100 0000 000 0
Q ss_pred c--ccccccc------------hhh---hhc-----------------ccc-------ccC------CCC--CCCCc---
Q 009641 239 F--LPSAFGS------------LKT---IRR-----------------CGV-------ERG------FKD--KPYPR--- 266 (530)
Q Consensus 239 ~--~~~~~~~------------~~~---~~~-----------------~~~-------~~~------~~~--~~~~~--- 266 (530)
. .+..+.. +.. +.+ ++. ..+ .++ ..-+.
T Consensus 283 ~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t 362 (796)
T PRK12906 283 LFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQT 362 (796)
T ss_pred HcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCcee
Confidence 0 0000000 000 000 000 000 000 00000
Q ss_pred -------------eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh--cC
Q 009641 267 -------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LG 331 (530)
Q Consensus 267 -------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~ 331 (530)
.+...+|+|......++...+--+.+.+++.... . ..-..-.+......|...+...+.. ..
T Consensus 363 ~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~--~-r~d~~d~i~~t~~~K~~al~~~i~~~~~~ 439 (796)
T PRK12906 363 LATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPV--I-RKDSPDLLYPTLDSKFNAVVKEIKERHAK 439 (796)
T ss_pred eeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCe--e-eeeCCCeEEcCHHHHHHHHHHHHHHHHhC
Confidence 0122344444333333333222222222221110 0 0001112233445677777777753 37
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCC---CCC---
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---GVN--- 405 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip---~~~--- 405 (530)
+.|+||||+|+..++.++..|.+.+ ++...+|+++...++..+.+.++.|. |+|||++++||.||+ ++.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~g---i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAG---IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCC---CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhC
Confidence 8899999999999999999999876 88899999999888888888887876 999999999999995 788
Q ss_pred --EEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 406 --NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 406 --~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
+||+++.|.|.+.|.|+.||+||.|.+|.+..|++.+|
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 99999999999999999999999999999999999886
No 93
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.4e-29 Score=273.58 Aligned_cols=318 Identities=18% Similarity=0.227 Sum_probs=211.3
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
..|...-|+...- +.++..+..++.++|.|+||||||.. +|.+..- .+.....++++.-|.|--|..++..+.+..
T Consensus 60 ~~~~~~LPi~~~~-~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle-~~~~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKR-EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLE-LGRGSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHH-HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHH-cCCCCCceEecCCccHHHHHHHHHHHHHHh
Confidence 5666556666532 33444444567789999999999984 5644221 111112234445588887777776655542
Q ss_pred cccCceEEEeecCC-chHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEe
Q 009641 126 PAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (530)
Q Consensus 126 ~~~~~~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViD 204 (530)
+..++..+|.. ..+.. ...+..|.++|+++|+..+... ..++.+++||||
T Consensus 136 ---g~~lG~~VGY~vR~~~~------------------------~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIID 186 (1283)
T TIGR01967 136 ---GTPLGEKVGYKVRFHDQ------------------------VSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIID 186 (1283)
T ss_pred ---CCCcceEEeeEEcCCcc------------------------cCCCceeeeccccHHHHHhhhC--cccccCcEEEEc
Confidence 44444444432 11111 1244689999999999988763 347899999999
Q ss_pred chh-HhhhHhhhh-HHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhh
Q 009641 205 ETD-RLLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (530)
Q Consensus 205 Eah-~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 282 (530)
||| +.++.++.- .+..++... +..++|++|||+. ...
T Consensus 187 EaHERsL~~D~LL~lLk~il~~r---------------------------------------pdLKlIlmSATld--~~~ 225 (1283)
T TIGR01967 187 EAHERSLNIDFLLGYLKQLLPRR---------------------------------------PDLKIIITSATID--PER 225 (1283)
T ss_pred CcchhhccchhHHHHHHHHHhhC---------------------------------------CCCeEEEEeCCcC--HHH
Confidence 999 466655542 233333221 2347999999995 455
Q ss_pred hhhhccCCceEEecCCccccCcccceeeEeeccC------CCcHHHHHHHHH---hcCCCcEEEEcCChHHHHHHHHHHH
Q 009641 283 LAQLDLHHPLFLTTGETRYKLPERLESYKLICES------KLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLN 353 (530)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~---~~~~~~~iVf~~s~~~~~~l~~~L~ 353 (530)
+...+...|++...+ ..++ +..++..... ..+...+...+. ....+.+|||+++..+++.+++.|.
T Consensus 226 fa~~F~~apvI~V~G-r~~P----Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~ 300 (1283)
T TIGR01967 226 FSRHFNNAPIIEVSG-RTYP----VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILR 300 (1283)
T ss_pred HHHHhcCCCEEEECC-Cccc----ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHH
Confidence 666655555533222 2222 1222221111 122233333332 2356899999999999999999998
Q ss_pred hcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC------------------CC
Q 009641 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------------------AY 415 (530)
Q Consensus 354 ~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p------------------~s 415 (530)
..+..+..+..+||+|++++|.++++.+ +..+|||||+++++|||||++++||+++.+ .|
T Consensus 301 ~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~IS 378 (1283)
T TIGR01967 301 KRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPIS 378 (1283)
T ss_pred hcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCC
Confidence 7654446788999999999999986554 346999999999999999999999999854 35
Q ss_pred hhHHHHHHhhhhcCCCCccEEEEeecchHH
Q 009641 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (530)
Q Consensus 416 ~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~ 445 (530)
..+|.||.||+||.| +|.|+.++++++..
T Consensus 379 kasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 379 QASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred HHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 679999999999997 99999999987653
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=7.2e-29 Score=251.46 Aligned_cols=294 Identities=19% Similarity=0.211 Sum_probs=187.4
Q ss_pred EEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcC
Q 009641 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (530)
Q Consensus 73 li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 152 (530)
|+.||||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++.+ +..+..++|+.+..+...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~------ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ------ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH------
Confidence 478999999999987765555443 4479999999999999999998764 567888888876655432
Q ss_pred ccccCccCCchhHHHhhc-CCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhh---hhHHHHHHhhcccC
Q 009641 153 KLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY---QAWLPTVLQLTRSD 228 (530)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~---~~~~~~i~~~~~~~ 228 (530)
.|..+. ..++|+|+|+..++ ..+.++++|||||+|...-.+. .-+...+......
T Consensus 68 ------------~~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~- 126 (505)
T TIGR00595 68 ------------AWRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK- 126 (505)
T ss_pred ------------HHHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-
Confidence 233333 34799999988663 2366899999999997632211 0011111111000
Q ss_pred cccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCc--cccCccc
Q 009641 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET--RYKLPER 306 (530)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 306 (530)
....+++++|||++.+ .+..........+..... ....+ .
T Consensus 127 -----------------------------------~~~~~vil~SATPsle--s~~~~~~g~~~~~~l~~r~~~~~~p-~ 168 (505)
T TIGR00595 127 -----------------------------------KFNCPVVLGSATPSLE--SYHNAKQKAYRLLVLTRRVSGRKPP-E 168 (505)
T ss_pred -----------------------------------hcCCCEEEEeCCCCHH--HHHHHhcCCeEEeechhhhcCCCCC-e
Confidence 0223689999997533 322221111111111111 00111 0
Q ss_pred ceeeEeeccC--CCcHHHHHHHHH-hc-CCCcEEEEcCChHH--------------------------------------
Q 009641 307 LESYKLICES--KLKPLYLVALLQ-SL-GEEKCIVFTSSVES-------------------------------------- 344 (530)
Q Consensus 307 ~~~~~~~~~~--~~k~~~l~~~l~-~~-~~~~~iVf~~s~~~-------------------------------------- 344 (530)
+......... ..-...+...++ .. .++++|||+|++..
T Consensus 169 v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~ 248 (505)
T TIGR00595 169 VKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGY 248 (505)
T ss_pred EEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcC
Confidence 1110000000 011123333333 22 35689999766432
Q ss_pred ----------------------HHHHHHHHHhcCCCcceEEEccccCCHHHH--HHHHHHHhcCCccEEEEecccccCCC
Q 009641 345 ----------------------THRLCTLLNHFGELRIKIKEYSGLQRQSVR--SKTLKAFREGKIQVLVSSDAMTRGMD 400 (530)
Q Consensus 345 ----------------------~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R--~~~~~~f~~g~~~iLVaT~~~~~GiD 400 (530)
++.+.+.|.+.. .+.++..+|++++...+ .++++.|++|+.+|||+|+++++|+|
T Consensus 249 ~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d 327 (505)
T TIGR00595 249 QEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHH 327 (505)
T ss_pred cCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCC
Confidence 477777777652 23688999999987666 89999999999999999999999999
Q ss_pred CCCCCEEEE--ccC----CC------ChhHHHHHHhhhhcCCCCccEEEEe
Q 009641 401 VEGVNNVVN--YDK----PA------YIKTYIHRAGRTARAGQLGRCFTLL 439 (530)
Q Consensus 401 ip~~~~VI~--~~~----p~------s~~~y~Qr~GR~gR~g~~g~~i~~~ 439 (530)
+|++++|+. +|. |. ....|+|++||+||.++.|.+++..
T Consensus 328 ~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 328 FPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred CCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 999998864 443 21 2457899999999999999988654
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=1.4e-28 Score=267.43 Aligned_cols=315 Identities=20% Similarity=0.212 Sum_probs=194.7
Q ss_pred CccchhhHHHHHHhcCCCCCC-CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 127 (530)
..+++||.+|+..+...+..+ +++++++|||||||++++. ++..+.... ...++|||+|+++|+.|+.+.++.+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~-~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK-RFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC-ccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 369999999998887655444 6799999999999998544 444444322 3458999999999999999999887322
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcC----CCCCCCCccEEEE
Q 009641 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 203 (530)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~----~~~~~~~~~~lVi 203 (530)
.+..+...++.....+. .......|+|+|.+.|.+.+... ..+.+..+++||+
T Consensus 490 ~~~~~~~i~~i~~L~~~-----------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIi 546 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDK-----------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIV 546 (1123)
T ss_pred cccchhhhhchhhhhhh-----------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEE
Confidence 11111111111100000 01134599999999998765321 1245678999999
Q ss_pred echhHhhhH---------------hhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCcee
Q 009641 204 DETDRLLRE---------------AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (530)
Q Consensus 204 DEah~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (530)
||||+-... .+......++.... -.
T Consensus 547 DEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd----------------------------------------A~ 586 (1123)
T PRK11448 547 DEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD----------------------------------------AV 586 (1123)
T ss_pred ECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC----------------------------------------cc
Confidence 999985310 01122333333221 13
Q ss_pred eEEEeEeecCChhhhhh--------------hccC---CceEEecCCccccC----cccceeeE-----e--e-ccC---
Q 009641 269 KMVLSATLTQDPNKLAQ--------------LDLH---HPLFLTTGETRYKL----PERLESYK-----L--I-CES--- 316 (530)
Q Consensus 269 ~i~~SaT~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~~~----~~~~~~~~-----~--~-~~~--- 316 (530)
.+.+||||......+.. -++. .|..+........+ ...+..+. . . .+.
T Consensus 587 ~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~ 666 (1123)
T PRK11448 587 KIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVD 666 (1123)
T ss_pred EEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHh
Confidence 57888887643322111 0111 12222111000000 00000000 0 0 000
Q ss_pred ------------CCcHHH----HHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcC-----C-CcceEEEccccCCHHHH
Q 009641 317 ------------KLKPLY----LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-----E-LRIKIKEYSGLQRQSVR 374 (530)
Q Consensus 317 ------------~~k~~~----l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~-----~-~~~~v~~~h~~~~~~~R 374 (530)
...... +...+....++++||||.++++|+.+++.|.+.. . .+..+..+||+++ ++
T Consensus 667 ~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~ 744 (1123)
T PRK11448 667 FEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KP 744 (1123)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--ch
Confidence 000001 1122222345799999999999999998886531 1 1124556888875 47
Q ss_pred HHHHHHHhcCCc-cEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCC
Q 009641 375 SKTLKAFREGKI-QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (530)
Q Consensus 375 ~~~~~~f~~g~~-~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g 430 (530)
..++++|+++.. .|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|.-
T Consensus 745 ~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 745 DQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred HHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 789999999886 68999999999999999999999999999999999999999953
No 96
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=9.4e-28 Score=247.69 Aligned_cols=145 Identities=18% Similarity=0.271 Sum_probs=122.3
Q ss_pred CCCHHHHHHHH-----HCCCCcc---chhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEE
Q 009641 34 CLDPRLKVALQ-----NMGISSL---FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105 (530)
Q Consensus 34 ~l~~~i~~~l~-----~~g~~~~---~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~l 105 (530)
++.+++.+.+. .+||..| +|+|.++++.++ .++++++.|+||+|||++|++|++..+..+. .++
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~----l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~----~v~ 139 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIA----MHKGFITEMQTGEGKTLTAVMPLYLNALTGK----PVH 139 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhh----cCCCeEEEeCCCCChHHHHHHHHHHHHhhcC----CeE
Confidence 57778877777 5899998 999999865544 5889999999999999999999998876532 489
Q ss_pred EEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-H
Q 009641 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-M 184 (530)
Q Consensus 106 il~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~ 184 (530)
||+||++||.|.++.+..+..++|++++++.|+.+...+... ..++|+|+||++| +
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~-----------------------y~~DIVygTPgRLgf 196 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI-----------------------YQCDVVYGTASEFGF 196 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH-----------------------cCCCEEEECCChhHH
Confidence 999999999999999999999999999999999987766432 2479999999999 9
Q ss_pred HHHhcCCCCCCC-------CccEEEEechhHhh
Q 009641 185 DHINATRGFTLE-------HLCYLVVDETDRLL 210 (530)
Q Consensus 185 ~~l~~~~~~~~~-------~~~~lViDEah~~~ 210 (530)
++++. +.+.++ .+.++|+||||+|+
T Consensus 197 DyLrd-~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 197 DYLRD-NSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHhhC-CCCCcCHHHhhcccccEEEEechhhhh
Confidence 99987 334433 56899999999975
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.7e-28 Score=251.47 Aligned_cols=357 Identities=16% Similarity=0.194 Sum_probs=233.4
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|. +..+...+.-|+.++||.|||+++.+|++.+...+ ..+.|++|+..||.|.++++..+.
T Consensus 79 lgm-~~ydVQl------iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g----~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQL------LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTG----KGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHH------hcchHhcCCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEeCCHHHHHHHHHHHHHHH
Confidence 676 8899995 44444456679999999999999999998777653 359999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcCCCCCC-----CCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~~~-----~~~~ 199 (530)
.++|++++++.++.+..+... ...+||+++||+.| +++|+..-.... +.+.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~-----------------------~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~ 204 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKA-----------------------AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLH 204 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHh-----------------------cCCCCeEEeCCCcccchhhhccCccchhhhhccccc
Confidence 999999999999887543321 24679999999999 888876423332 6789
Q ss_pred EEEEechhHhhhHh----------------hhhHHHHHHhhcccCcc---------cccc--cc--------------cc
Q 009641 200 YLVVDETDRLLREA----------------YQAWLPTVLQLTRSDNE---------NRFS--DA--------------ST 238 (530)
Q Consensus 200 ~lViDEah~~~~~~----------------~~~~~~~i~~~~~~~~~---------~~~~--~~--------------~~ 238 (530)
++||||||.++-+. ....+..+...+..... ..+. +- ..
T Consensus 205 ~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~ 284 (908)
T PRK13107 205 YALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVEN 284 (908)
T ss_pred eeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHH
Confidence 99999999975321 12222222222211000 0000 00 00
Q ss_pred cc---------cccccchh--hh-------------hc----------cccccCCCCC----------------------
Q 009641 239 FL---------PSAFGSLK--TI-------------RR----------CGVERGFKDK---------------------- 262 (530)
Q Consensus 239 ~~---------~~~~~~~~--~~-------------~~----------~~~~~~~~~~---------------------- 262 (530)
.+ ...+.... .. .+ ..+.+.+...
T Consensus 285 ~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~ 364 (908)
T PRK13107 285 LLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVH 364 (908)
T ss_pred HHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCC
Confidence 00 00000000 00 00 0000000000
Q ss_pred CCCce----------------eeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHH
Q 009641 263 PYPRL----------------VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (530)
Q Consensus 263 ~~~~~----------------~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (530)
.-+.- +...||+|......++...+--+.+.+++.... .... ..-.+......|...+.+-
T Consensus 365 I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~--~R~d-~~d~iy~t~~~K~~Aii~e 441 (908)
T PRK13107 365 IQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPM--VRKD-MADLVYLTADEKYQAIIKD 441 (908)
T ss_pred CCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCc--ccee-CCCcEEeCHHHHHHHHHHH
Confidence 00000 122344444433333333333333333222111 0000 0111223345666666665
Q ss_pred HH--hcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCC-
Q 009641 327 LQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG- 403 (530)
Q Consensus 327 l~--~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~- 403 (530)
+. ...+.|+||||.|++.++.++..|...+ ++...+|+++++.++..+.+.|+.|. |+|||++++||.||.=
T Consensus 442 i~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g---i~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLg 516 (908)
T PRK13107 442 IKDCRERGQPVLVGTVSIEQSELLARLMVKEK---IPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLG 516 (908)
T ss_pred HHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC---CCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecC
Confidence 54 3467899999999999999999999876 88899999999999999999999997 9999999999999971
Q ss_pred ------------------------------------CCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchH
Q 009641 404 ------------------------------------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (530)
Q Consensus 404 ------------------------------------~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~ 444 (530)
=-+||-...+.|..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 517 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 517 GNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred CchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12789899999999999999999999999999999998763
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=2e-27 Score=214.34 Aligned_cols=308 Identities=20% Similarity=0.188 Sum_probs=214.6
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
+++|.|+.|-..++..+.+..+.|++|-||+|||....- .++...+ .|.++.+.+|....+.+++..++.-.. +
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~-~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~--~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQ-GIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFS--N 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHH-HHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhc--c
Confidence 899999999888888787889999999999999986443 4444443 355799999999999999999988644 4
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
..+.+++|++.... ...++|+|-..|+.+-.. ++++||||+|.+
T Consensus 171 ~~I~~Lyg~S~~~f----------------------------r~plvVaTtHQLlrFk~a--------FD~liIDEVDAF 214 (441)
T COG4098 171 CDIDLLYGDSDSYF----------------------------RAPLVVATTHQLLRFKQA--------FDLLIIDEVDAF 214 (441)
T ss_pred CCeeeEecCCchhc----------------------------cccEEEEehHHHHHHHhh--------ccEEEEeccccc
Confidence 67788888875322 148999998888776543 899999999986
Q ss_pred hhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccC
Q 009641 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (530)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 289 (530)
.-. -...+....+.-.. +.-..|++|||+++.++.-....-.
T Consensus 215 P~~-~d~~L~~Av~~ark-------------------------------------~~g~~IylTATp~k~l~r~~~~g~~ 256 (441)
T COG4098 215 PFS-DDQSLQYAVKKARK-------------------------------------KEGATIYLTATPTKKLERKILKGNL 256 (441)
T ss_pred ccc-CCHHHHHHHHHhhc-------------------------------------ccCceEEEecCChHHHHHHhhhCCe
Confidence 211 01112222221111 1114799999999777665544433
Q ss_pred CceEEecCCccccCcccceeeEeeccCCC-----cH-HHHHHHHHh--cCCCcEEEEcCChHHHHHHHHHHHhcCCCcce
Q 009641 290 HPLFLTTGETRYKLPERLESYKLICESKL-----KP-LYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361 (530)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----k~-~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~ 361 (530)
.++.+.......++ .+..+.+..+-.. |+ ..|..+++. ..+.+++||+++++..+.++..|+..- ....
T Consensus 257 ~~~klp~RfH~~pL--pvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-~~~~ 333 (441)
T COG4098 257 RILKLPARFHGKPL--PVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-PKET 333 (441)
T ss_pred eEeecchhhcCCCC--CCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-Cccc
Confidence 34444443333333 3334444333222 22 356777764 356899999999999999999996532 1245
Q ss_pred EEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC--CChhHHHHHHhhhhcCC-CCccEEEE
Q 009641 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AYIKTYIHRAGRTARAG-QLGRCFTL 438 (530)
Q Consensus 362 v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p--~s~~~y~Qr~GR~gR~g-~~g~~i~~ 438 (530)
+...|+. ...|.+.++.|++|+.++||+|.+++||+.+|+++++|.-.-. .+...++|..||+||.- ++.--+.|
T Consensus 334 i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~F 411 (441)
T COG4098 334 IASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLF 411 (441)
T ss_pred eeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEE
Confidence 5677875 4569999999999999999999999999999999986653322 56789999999999953 33333445
Q ss_pred eecc
Q 009641 439 LHKD 442 (530)
Q Consensus 439 ~~~~ 442 (530)
+...
T Consensus 412 FH~G 415 (441)
T COG4098 412 FHYG 415 (441)
T ss_pred Eecc
Confidence 5544
No 99
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=5.8e-28 Score=219.59 Aligned_cols=197 Identities=31% Similarity=0.502 Sum_probs=166.6
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC-CCcccEEEEcCcHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRD 112 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~-~~~~~~lil~Pt~~ 112 (530)
++++.+.+.|.++|+..|+++|.++++.+.. ++++++.+|||+|||++|++|+++.+.... ..+++++|++|+++
T Consensus 5 ~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 5 GLSPELLRGIYALGFEKPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 4999999999999999999999999888765 899999999999999999999999888752 24678999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCC
Q 009641 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (530)
Q Consensus 113 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~ 192 (530)
|+.|+.+.++.+....++.+..++|+....+.... +..+++|+|+||+.+...+.+ ..
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~iiv~T~~~l~~~l~~-~~ 138 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---------------------LKRGPHIVVATPGRLLDLLER-GK 138 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEEChHHHHHHHHc-CC
Confidence 99999999999988778999999998876554322 224679999999999998887 44
Q ss_pred CCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 009641 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (530)
Q Consensus 193 ~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (530)
..+.+++++|+||||.+.+.++...+..+...+.. ..+.+++
T Consensus 139 ~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~--------------------------------------~~~~~~~ 180 (203)
T cd00268 139 LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK--------------------------------------DRQTLLF 180 (203)
T ss_pred CChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc--------------------------------------ccEEEEE
Confidence 77889999999999999888888888887776542 2279999
Q ss_pred eEeecCChhhhhhhccCCceEE
Q 009641 273 SATLTQDPNKLAQLDLHHPLFL 294 (530)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~ 294 (530)
|||+++....+....+.+++.+
T Consensus 181 SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 181 SATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred eccCCHHHHHHHHHHCCCCEEe
Confidence 9999988888877777777654
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=241.80 Aligned_cols=351 Identities=20% Similarity=0.214 Sum_probs=248.2
Q ss_pred CHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHH
Q 009641 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (530)
Q Consensus 36 ~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~ 115 (530)
+....-..+..|...++.||.+++. .+.++.++|.+..+||+.|||+++-+.++..+.-. +..++.+.|-...+.
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~ 283 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQ 283 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhH
Confidence 3344445556799999999999973 56667789999999999999999999998877663 346999999999998
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCC-CCC
Q 009641 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFT 194 (530)
Q Consensus 116 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-~~~ 194 (530)
+-...+..++..+|+++..+.|........ +.-.+.|+|-++-..++.+.- .-.
T Consensus 284 Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~-------------------------k~~sv~i~tiEkanslin~lie~g~ 338 (1008)
T KOG0950|consen 284 EKISALSPFSIDLGFPVEEYAGRFPPEKRR-------------------------KRESVAIATIEKANSLINSLIEQGR 338 (1008)
T ss_pred HHHhhhhhhccccCCcchhhcccCCCCCcc-------------------------cceeeeeeehHhhHhHHHHHHhcCC
Confidence 888899999999999999998776543321 334899999987765554321 123
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
+..+++||+||.|.+.+.+.+..++.++..+-..... ..+|+|.+||
T Consensus 339 ~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~---------------------------------~~~~iIGMSA 385 (1008)
T KOG0950|consen 339 LDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE---------------------------------TSVQIIGMSA 385 (1008)
T ss_pred ccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc---------------------------------cceeEeeeec
Confidence 6679999999999999999999999998865432211 1148999999
Q ss_pred eecCChhhhhhhccCCceEEecCCccccCcccceeeE-------------------eeccCCCcHHHHHHHHH-hc-CCC
Q 009641 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK-------------------LICESKLKPLYLVALLQ-SL-GEE 333 (530)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~k~~~l~~~l~-~~-~~~ 333 (530)
|+++. ..+..+. . ...+....+..++...+..-. ......+- +.+..+.. .. .+.
T Consensus 386 Ti~N~-~lL~~~L-~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dp-D~~v~L~tet~~e~~ 461 (1008)
T KOG0950|consen 386 TIPNN-SLLQDWL-D-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDP-DHLVGLCTETAPEGS 461 (1008)
T ss_pred ccCCh-HHHHHHh-h-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCC-cceeeehhhhhhcCC
Confidence 99754 2222211 1 111111111111111110000 00000010 12222221 11 234
Q ss_pred cEEEEcCChHHHHHHHHHHHhcC-----------------------------------CCcceEEEccccCCHHHHHHHH
Q 009641 334 KCIVFTSSVESTHRLCTLLNHFG-----------------------------------ELRIKIKEYSGLQRQSVRSKTL 378 (530)
Q Consensus 334 ~~iVf~~s~~~~~~l~~~L~~~~-----------------------------------~~~~~v~~~h~~~~~~~R~~~~ 378 (530)
++||||++++.|+.++..+...- ...+++.++|++++.++|..+.
T Consensus 462 ~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE 541 (1008)
T KOG0950|consen 462 SVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIE 541 (1008)
T ss_pred eEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHH
Confidence 69999999999999987663210 0245888999999999999999
Q ss_pred HHHhcCCccEEEEecccccCCCCCCCCEEEEccC----CCChhHHHHHHhhhhcCCCC--ccEEEEeecchHHHHHHHHH
Q 009641 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK----PAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQ 452 (530)
Q Consensus 379 ~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~----p~s~~~y~Qr~GR~gR~g~~--g~~i~~~~~~~~~~~~~~~~ 452 (530)
..|++|...|++||++++.|+++|..+++|-.-. ..+.-.|.||+|||||.|-+ |.+++++.+.|...+..++.
T Consensus 542 ~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 542 AAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred HHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 9999999999999999999999998777665432 23566899999999999866 99999999999888777665
Q ss_pred H
Q 009641 453 K 453 (530)
Q Consensus 453 ~ 453 (530)
.
T Consensus 622 ~ 622 (1008)
T KOG0950|consen 622 S 622 (1008)
T ss_pred c
Confidence 4
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1e-25 Score=229.70 Aligned_cols=319 Identities=22% Similarity=0.294 Sum_probs=201.2
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
.|| .|+..|+- +...+.+|+++-+.||||.|||. |.+.+--.+.. ++.++++++||..|+.|.++.+++++
T Consensus 79 ~G~-~~ws~QR~----WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~---kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 79 TGF-RPWSAQRV----WAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK---KGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hCC-CchHHHHH----HHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh---cCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 576 99999986 56677789999999999999996 44433333332 45689999999999999999999998
Q ss_pred cccC-ceEEE-eecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHHHhcCCCCCCCCccEEE
Q 009641 126 PAVG-LSVGL-AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (530)
Q Consensus 126 ~~~~-~~v~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lV 202 (530)
...+ ..+.. +|+..+..+... ....+. ...||+|+|.+-|...+..... -+|++++
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee------------------~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfif 208 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEE------------------ALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIF 208 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHH------------------HHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEE
Confidence 7665 44333 667655544422 223333 4589999998888776665322 3699999
Q ss_pred EechhHhhhHhhhhHHHHHHhhcccCcccccc--cccccc-----cccccchhhh-hccccccCCCCCCCCceeeEEEeE
Q 009641 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFS--DASTFL-----PSAFGSLKTI-RRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 203 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
+|++|.++..+ ..+..++..+.......-. ...... .+........ +...... ...-...-+.++.||
T Consensus 209 VDDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~--~~~r~k~g~LvvsSA 284 (1187)
T COG1110 209 VDDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVERER--EKKRRKLGILVVSSA 284 (1187)
T ss_pred EccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--HHhccCCceEEEeec
Confidence 99999987764 3444444443321100000 000000 0000000000 0000000 000011226788899
Q ss_pred eecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCC---hHHHHHHHHH
Q 009641 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS---VESTHRLCTL 351 (530)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s---~~~~~~l~~~ 351 (530)
|..+..... ..++.-.-+.++.....+.+.+..|... .....+.++++.... ..|||++. ++.++.+++.
T Consensus 285 Tg~~rg~R~--~LfReLlgFevG~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~ 357 (1187)
T COG1110 285 TGKPRGSRL--KLFRELLGFEVGSGGEGLRNIVDIYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEY 357 (1187)
T ss_pred cCCCCCchH--HHHHHHhCCccCccchhhhheeeeeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHH
Confidence 986554221 1111111223333332333322222222 555666667776654 77999999 9999999999
Q ss_pred HHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec----ccccCCCCCC-CCEEEEccCC
Q 009641 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD----AMTRGMDVEG-VNNVVNYDKP 413 (530)
Q Consensus 352 L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~----~~~~GiDip~-~~~VI~~~~p 413 (530)
|...| +++..+|+. ..+.++.|..|+.++||++. ++.||+|+|. ++.+|+++.|
T Consensus 358 Lr~~G---i~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 358 LRSHG---INAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHhcC---ceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 99877 999999984 36889999999999999875 7899999996 8899999988
No 102
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=1e-25 Score=240.44 Aligned_cols=357 Identities=19% Similarity=0.176 Sum_probs=215.0
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
+|++||.+++..++.....+.++|+...+|.|||+..+. ++..+.........+|||||. .+..||.+++.++++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~-- 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPV-- 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCC--
Confidence 799999999988765444578899999999999997544 444443322223368999997 7778899999999763
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
+++..++|........... .......+|+|+|++.+........ --.+++||+||||++
T Consensus 245 l~v~~~~G~~~eR~~~~~~------------------~~~~~~~dVvITSYe~l~~e~~~L~---k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREE------------------LLVAGKFDVCVTSFEMAIKEKTALK---RFSWRYIIIDEAHRI 303 (1033)
T ss_pred CceEEEeCCHHHHHHHHHH------------------HhcccCCCcceecHHHHHHHHHHhc---cCCCCEEEEcCcccc
Confidence 6677777755432221110 0112347999999999876543322 235889999999998
Q ss_pred hhHhhhhHHHHHHhhcccCcccccccccc---------------cccccccchhhhhcc---------------------
Q 009641 210 LREAYQAWLPTVLQLTRSDNENRFSDAST---------------FLPSAFGSLKTIRRC--------------------- 253 (530)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--------------------- 253 (530)
-+... .+...+..+... .++...++ ..|..++....+...
T Consensus 304 KN~~S--klskalr~L~a~--~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~ 379 (1033)
T PLN03142 304 KNENS--LLSKTMRLFSTN--YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLR 379 (1033)
T ss_pred CCHHH--HHHHHHHHhhcC--cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhh
Confidence 55321 122222222211 01111111 111111111110000
Q ss_pred --cccc--CCCCCCCCceeeEEEeEeecCChhhhhh---------------------------hccCCceEEecCCcccc
Q 009641 254 --GVER--GFKDKPYPRLVKMVLSATLTQDPNKLAQ---------------------------LDLHHPLFLTTGETRYK 302 (530)
Q Consensus 254 --~~~~--~~~~~~~~~~~~i~~SaT~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~ 302 (530)
-+.+ .-.....|......+...++..-..+.. ....+|..+.......
T Consensus 380 pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~- 458 (1033)
T PLN03142 380 PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGP- 458 (1033)
T ss_pred HHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccC-
Confidence 0000 0000011111111111111111111000 0111222111100000
Q ss_pred CcccceeeEeeccCCCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHH
Q 009641 303 LPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380 (530)
Q Consensus 303 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 380 (530)
... ..........|...|..++... .+.++|||+........|.+.|...+ +....++|+++..+|..+++.
T Consensus 459 --~~~-~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g---~~y~rIdGsts~~eRq~~Id~ 532 (1033)
T PLN03142 459 --PYT-TGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG---YQYCRIDGNTGGEDRDASIDA 532 (1033)
T ss_pred --ccc-chhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHH
Confidence 000 0000112346777777777643 56799999999999999999998765 888999999999999999999
Q ss_pred HhcC---CccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEE--Eeecc
Q 009641 381 FREG---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKD 442 (530)
Q Consensus 381 f~~g---~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~--~~~~~ 442 (530)
|.+. ...+|++|.+.+.|||++.+++||+||+++|+....|++||+.|.|+...+.+ |+..+
T Consensus 533 Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 533 FNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred hccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9753 34578999999999999999999999999999999999999999999865544 55554
No 103
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.93 E-value=1.3e-23 Score=227.98 Aligned_cols=401 Identities=18% Similarity=0.182 Sum_probs=224.2
Q ss_pred CCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcH
Q 009641 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (530)
Q Consensus 32 ~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~ 111 (530)
++.+++.+.+.+...|| +++|.|.+.+..+...+..++++++.||||+|||++|++|++.... .+.+++|.+||+
T Consensus 228 ~~~~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----~~~~vvi~t~t~ 302 (850)
T TIGR01407 228 YNTLSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----TEKPVVISTNTK 302 (850)
T ss_pred cccccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----CCCeEEEEeCcH
Confidence 34577788888989999 5999999988887777777899999999999999999999987665 234799999999
Q ss_pred HHHHHHHH-HHHHhccccC--ceEEEeecCCch---HHHHHHHhh----------------------cCcccc-------
Q 009641 112 DLALQVKD-VFAAIAPAVG--LSVGLAVGQSSI---ADEISELIK----------------------RPKLEA------- 156 (530)
Q Consensus 112 ~L~~Q~~~-~l~~~~~~~~--~~v~~~~g~~~~---~~~~~~~~~----------------------~~~~~~------- 156 (530)
+|..|+.. .+..+.+.++ +++.++.|..+. ..-...+.. ..+...
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 5666654444 777877777542 111000000 000000
Q ss_pred ---------C-----cc----CCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhh----
Q 009641 157 ---------G-----IC----YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY---- 214 (530)
Q Consensus 157 ---------~-----~~----~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~---- 214 (530)
. .| .+.....+.....+||+|++...|+..+..... .+...+++||||||++.+...
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~-ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPE-LFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccc-cCCCCCEEEEECcchHHHHHHHHhc
Confidence 0 00 112222334455689999999999887754222 245568999999999854211
Q ss_pred --------hhHHHHHHh------------hccc---Ccccccc-----------------------cc-cccccc---cc
Q 009641 215 --------QAWLPTVLQ------------LTRS---DNENRFS-----------------------DA-STFLPS---AF 244 (530)
Q Consensus 215 --------~~~~~~i~~------------~~~~---~~~~~~~-----------------------~~-~~~~~~---~~ 244 (530)
...+..+.. .... .....+. .. ...... ..
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 111111100 0000 0000000 00 000000 00
Q ss_pred cc----------------hhhhhcc--------ccccC-------CCCCCC-CceeeEEEeEeecCC--hhhhhh-hccC
Q 009641 245 GS----------------LKTIRRC--------GVERG-------FKDKPY-PRLVKMVLSATLTQD--PNKLAQ-LDLH 289 (530)
Q Consensus 245 ~~----------------~~~~~~~--------~~~~~-------~~~~~~-~~~~~i~~SaT~~~~--~~~~~~-~~~~ 289 (530)
.. ..++... .+... +..... .....|++|||+... ...+.. .++.
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0000000 00000 000011 123578999999743 233322 2332
Q ss_pred CceEEecCCccccCcccceeeEeecc-C----CCcH---HHHHHHHH---hcCCCcEEEEcCChHHHHHHHHHHHhcCC-
Q 009641 290 HPLFLTTGETRYKLPERLESYKLICE-S----KLKP---LYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGE- 357 (530)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~k~---~~l~~~l~---~~~~~~~iVf~~s~~~~~~l~~~L~~~~~- 357 (530)
+................. ..++..+ . .... ..+...+. ...++++|||++|.+..+.++..|.....
T Consensus 622 ~~~~~~~~~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~ 700 (850)
T TIGR01407 622 DVHFNTIEPTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEF 700 (850)
T ss_pred ccccceecCCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccc
Confidence 222111111111111111 1111110 0 0111 12222222 23567999999999999999999875211
Q ss_pred CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCC--EEEEccCCCC--------------------
Q 009641 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN--NVVNYDKPAY-------------------- 415 (530)
Q Consensus 358 ~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~--~VI~~~~p~s-------------------- 415 (530)
.++.+ +..+.. ..|.+++++|++++..||++|+.+++|||+|+.. .||...+|..
T Consensus 701 ~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~ 777 (850)
T TIGR01407 701 EGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKN 777 (850)
T ss_pred cCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 12333 222332 4689999999999999999999999999999754 6777776631
Q ss_pred ----------hhHHHHHHhhhhcCCCCccEEEEeecc
Q 009641 416 ----------IKTYIHRAGRTARAGQLGRCFTLLHKD 442 (530)
Q Consensus 416 ----------~~~y~Qr~GR~gR~g~~g~~i~~~~~~ 442 (530)
...+.|.+||.-|...+.-++++++..
T Consensus 778 ~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 778 PFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred chHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 123459999999987664455555543
No 104
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.5e-24 Score=224.65 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=111.5
Q ss_pred ccCCCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEE
Q 009641 314 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (530)
Q Consensus 314 ~~~~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVa 391 (530)
.....|...+...+... .+.++||||+|++.++.++..|...+ ++...+|+ .+.+|+..+-.|+.+...|+||
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g---I~h~vLna--kq~~REa~Iia~AG~~g~VtIA 652 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR---IAHNVLNA--KQHDREAEIVAEAGQKGAVTIA 652 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCceeecC--CHHHhHHHHHHhcCCCCeEEEe
Confidence 34456888888877543 67899999999999999999999876 78889997 5889999999999999999999
Q ss_pred ecccccCCCCC---CCC-----EEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchH
Q 009641 392 SDAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (530)
Q Consensus 392 T~~~~~GiDip---~~~-----~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~ 444 (530)
|++++||+||+ +|. +||+++.|.|.+.|.|++||+||.|.+|.++.|++.+|.
T Consensus 653 TNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 653 TNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred ccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999999 443 459999999999999999999999999999999999863
No 105
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.1e-23 Score=199.11 Aligned_cols=162 Identities=21% Similarity=0.243 Sum_probs=123.8
Q ss_pred eeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH--hcCCCcEEEEcCChHHH
Q 009641 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSVEST 345 (530)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~iVf~~s~~~~ 345 (530)
|++++|||+.+--........-+-++-.++. +.....+.+.......|..-++ ...+.+++|-+-|.++|
T Consensus 388 q~i~VSATPg~~E~e~s~~~vveQiIRPTGL--------lDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 388 QTIYVSATPGDYELEQSGGNVVEQIIRPTGL--------LDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CEEEEECCCChHHHHhccCceeEEeecCCCC--------CCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 8999999986433222221111111111211 1112222344455555555444 34578999999999999
Q ss_pred HHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC-----CCChhHHH
Q 009641 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-----PAYIKTYI 420 (530)
Q Consensus 346 ~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~-----p~s~~~y~ 420 (530)
+.+.++|.+.| +++..+|++...-+|.+++++++.|.++|||.-+.+-+|+|+|.|.+|.++|. ..|..+++
T Consensus 460 EdLT~Yl~e~g---ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 460 EDLTEYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHhcC---ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 99999999877 99999999999999999999999999999999999999999999999999875 46888999
Q ss_pred HHHhhhhcCCCCccEEEEeec
Q 009641 421 HRAGRTARAGQLGRCFTLLHK 441 (530)
Q Consensus 421 Qr~GR~gR~g~~g~~i~~~~~ 441 (530)
|.+|||+|. -.|.+++|...
T Consensus 537 QtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 537 QTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHHHhhc-cCCeEEEEchh
Confidence 999999997 57999998765
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=2e-24 Score=190.44 Aligned_cols=148 Identities=33% Similarity=0.539 Sum_probs=123.3
Q ss_pred chhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCce
Q 009641 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131 (530)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~ 131 (530)
||+|.++++.+.. ++++++.||||+|||+++.++++..+... +..+++|++|+++|++|+.+.+..++...+.+
T Consensus 1 t~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccccccc
Confidence 6899999998873 88999999999999999999999988775 33489999999999999999999998887889
Q ss_pred EEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhh
Q 009641 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (530)
Q Consensus 132 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~ 211 (530)
+..++|+......... .+..+++|+|+||++|...+...+ .++.++++||+||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~--------------------~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 75 VVLLHGGQSISEDQRE--------------------VLSNQADILVTTPEQLLDLISNGK-INISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp EEEESTTSCHHHHHHH--------------------HHHTTSSEEEEEHHHHHHHHHTTS-STGTTESEEEEETHHHHHH
T ss_pred cccccccccccccccc--------------------cccccccccccCcchhhccccccc-cccccceeeccCccccccc
Confidence 9999998875533221 223567999999999999998733 3677799999999999988
Q ss_pred HhhhhHHHHHHhhcc
Q 009641 212 EAYQAWLPTVLQLTR 226 (530)
Q Consensus 212 ~~~~~~~~~i~~~~~ 226 (530)
..+...+..++..+.
T Consensus 134 ~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 134 ETFRAMLKSILRRLK 148 (169)
T ss_dssp TTHHHHHHHHHHHSH
T ss_pred ccHHHHHHHHHHHhc
Confidence 777777888877654
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.92 E-value=5.9e-24 Score=225.82 Aligned_cols=344 Identities=16% Similarity=0.141 Sum_probs=211.7
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
..++.|..++..+......+..+++.||||+|||.+.+.++...+........+++++.|++.+++++++.+++.....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 45899999988776543322389999999999999999999888877322456899999999999999999998766543
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCC-C--CCccEEEEech
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-L--EHLCYLVVDET 206 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~-~--~~~~~lViDEa 206 (530)
+.....+|.....-. . .+........+..+ ........+.++||............+. + =..+.+|+||+
T Consensus 275 ~~~~~~h~~~~~~~~-~----~~~~~~~~~~~~~d--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 275 VIGKSLHSSSKEPLL-L----EPDQDILLTLTTND--SYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred cccccccccccchhh-h----ccccccceeEEecc--cccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 333222333221111 0 00000000000000 0000113455666655554322212222 1 12579999999
Q ss_pred hHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhh
Q 009641 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286 (530)
Q Consensus 207 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 286 (530)
|.+.+......+..++..+.... ..++++|||+|.........
T Consensus 348 h~~~~~~~~~~l~~~i~~l~~~g-------------------------------------~~ill~SATlP~~~~~~l~~ 390 (733)
T COG1203 348 HLYADETMLAALLALLEALAEAG-------------------------------------VPVLLMSATLPPFLKEKLKK 390 (733)
T ss_pred HhhcccchHHHHHHHHHHHHhCC-------------------------------------CCEEEEecCCCHHHHHHHHH
Confidence 98866534444444444433221 25899999999887776554
Q ss_pred ccCCceEEecCCcccc-CcccceeeEeeccCCCc--HHHHHHHH-HhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceE
Q 009641 287 DLHHPLFLTTGETRYK-LPERLESYKLICESKLK--PLYLVALL-QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 362 (530)
Q Consensus 287 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k--~~~l~~~l-~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v 362 (530)
................ ................. ........ ....+.+++|.|||+..|..+++.|+..+ ..+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~---~~v 467 (733)
T COG1203 391 ALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG---PKV 467 (733)
T ss_pred HHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcC---CCE
Confidence 4433322221111000 00000000000000000 01111111 12356899999999999999999999865 279
Q ss_pred EEccccCCHHHHHHHHHHHh----cCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCC--CCccEE
Q 009641 363 KEYSGLQRQSVRSKTLKAFR----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLGRCF 436 (530)
Q Consensus 363 ~~~h~~~~~~~R~~~~~~f~----~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g--~~g~~i 436 (530)
..+||.+...+|.+.++.+. .+...|+|||++++.|+|+. .+++|-=-. .+.+.+||+||++|.| ..|..+
T Consensus 468 ~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~ 544 (733)
T COG1203 468 LLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELA--PIDSLIQRAGRVNRHGKKENGKIY 544 (733)
T ss_pred EEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCC--CHHHHHHHHHHHhhcccccCCcee
Confidence 99999999999998888654 57889999999999999996 776654333 3889999999999999 557777
Q ss_pred EEeecch
Q 009641 437 TLLHKDE 443 (530)
Q Consensus 437 ~~~~~~~ 443 (530)
++...+.
T Consensus 545 v~~~~~~ 551 (733)
T COG1203 545 VYNDEER 551 (733)
T ss_pred EeecccC
Confidence 7766553
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.92 E-value=3.1e-22 Score=207.90 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=111.9
Q ss_pred CCCcHHHHHHHHHh--cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec
Q 009641 316 SKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (530)
Q Consensus 316 ~~~k~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~ 393 (530)
...+...+...++. ..+.++||||++++.++.+++.|...+ +.+..+||++++.+|.++++.|+.|+..|||||+
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g---i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG---IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc---cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 34456666666654 356789999999999999999999876 8899999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcc-----CCCChhHHHHHHhhhhcCCCCccEEEEeecchHH
Q 009641 394 AMTRGMDVEGVNNVVNYD-----KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (530)
Q Consensus 394 ~~~~GiDip~~~~VI~~~-----~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~ 445 (530)
++++|+|+|++++||++| .|.+..+|+||+||+||. ..|.+++|+...+..
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~ 556 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDS 556 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHH
Confidence 999999999999999988 799999999999999998 689999999876543
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=7.4e-21 Score=199.40 Aligned_cols=153 Identities=22% Similarity=0.310 Sum_probs=124.4
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc
Q 009641 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (530)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~ 394 (530)
..+...+...+... .+.++||||++...++.+++.|...+ +++..+||++++.+|..+++.|+.|...|||||++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g---i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc---eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 34555666666543 56789999999999999999999776 89999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccC-----CCChhHHHHHHhhhhcCCCCccEEEEeec---------chHHHHHHHHHHhcCCCCC
Q 009641 395 MTRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHK---------DEVKRFKKLLQKADNDSCP 460 (530)
Q Consensus 395 ~~~GiDip~~~~VI~~~~-----p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~---------~~~~~~~~~~~~~~~~~~~ 460 (530)
+++|+|+|++++||++|. |.+..+|+||+||+||. ..|.+++|++. .|....+++...++..
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--- 581 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEE--- 581 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 999999999999999885 78999999999999996 78999999984 3555566665554432
Q ss_pred CcCCChhHHhhhHHHH
Q 009641 461 IHSIPSSLIESLRPVY 476 (530)
Q Consensus 461 ~~~~~~~~~~~~~~~~ 476 (530)
...+|...++.+...+
T Consensus 582 ~~~~~~~~~~~~~~~~ 597 (652)
T PRK05298 582 HGITPKTIKKKIRDIL 597 (652)
T ss_pred cCCCChhHHHHHHHHH
Confidence 2445555555555444
No 110
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.1e-22 Score=211.96 Aligned_cols=304 Identities=21% Similarity=0.253 Sum_probs=200.8
Q ss_pred cCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc-cccCceEEEeecCCch
Q 009641 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSI 141 (530)
Q Consensus 63 ~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~-~~~~~~v~~~~g~~~~ 141 (530)
+..+..++-++|.||||||||...-..+++.-.. .+.++.+.=|.|--|..+++.+.+.. ...|-.|+...-..+
T Consensus 59 ~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~---~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~- 134 (845)
T COG1643 59 LKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG---IAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFES- 134 (845)
T ss_pred HHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc---cCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeec-
Confidence 3333346779999999999998643334443321 22245555599877777776655542 222333332221111
Q ss_pred HHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh-hhHhhh-hHHH
Q 009641 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAYQ-AWLP 219 (530)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~-~~~~~~-~~~~ 219 (530)
.......|-++|.+.|++.+.+. ..++.+++|||||||.= ++.++. ..+.
T Consensus 135 --------------------------~~s~~Trik~mTdGiLlrei~~D--~~Ls~ys~vIiDEaHERSl~tDilLgllk 186 (845)
T COG1643 135 --------------------------KVSPRTRIKVMTDGILLREIQND--PLLSGYSVVIIDEAHERSLNTDILLGLLK 186 (845)
T ss_pred --------------------------cCCCCceeEEeccHHHHHHHhhC--cccccCCEEEEcchhhhhHHHHHHHHHHH
Confidence 11234589999999999998863 44889999999999962 111111 1122
Q ss_pred HHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCc
Q 009641 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (530)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (530)
.++...+ +.+++|++|||+ +.+.+...+..-|++...+.
T Consensus 187 ~~~~~rr--------------------------------------~DLKiIimSATl--d~~rfs~~f~~apvi~i~GR- 225 (845)
T COG1643 187 DLLARRR--------------------------------------DDLKLIIMSATL--DAERFSAYFGNAPVIEIEGR- 225 (845)
T ss_pred HHHhhcC--------------------------------------CCceEEEEeccc--CHHHHHHHcCCCCEEEecCC-
Confidence 2222111 235899999998 56666666655555443332
Q ss_pred cccCcccceeeEee-ccCCC-cHHHHHHHHH---hcCCCcEEEEcCChHHHHHHHHHHHhc-CCCcceEEEccccCCHHH
Q 009641 300 RYKLPERLESYKLI-CESKL-KPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSV 373 (530)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~~~-k~~~l~~~l~---~~~~~~~iVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~h~~~~~~~ 373 (530)
.+ .++.++.. ..... -...+...+. ....+.+|||.+...+.+..++.|.+. -.....+..+||.++.++
T Consensus 226 ~f----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~e 301 (845)
T COG1643 226 TY----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEE 301 (845)
T ss_pred cc----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHH
Confidence 21 12222211 11222 2333333333 345789999999999999999999872 113478899999999999
Q ss_pred HHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC------------------CChhHHHHHHhhhhcCCCCccE
Q 009641 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------------------AYIKTYIHRAGRTARAGQLGRC 435 (530)
Q Consensus 374 R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p------------------~s~~~y~Qr~GR~gR~g~~g~~ 435 (530)
..++++.-..|..+|++||++++.+|.||++..||+-+.. -|-.+..||.||+||- .+|.|
T Consensus 302 Q~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGic 380 (845)
T COG1643 302 QVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGIC 380 (845)
T ss_pred HHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceE
Confidence 9998888778878899999999999999999999986542 3556788999999998 49999
Q ss_pred EEEeecchH
Q 009641 436 FTLLHKDEV 444 (530)
Q Consensus 436 i~~~~~~~~ 444 (530)
+-++++++.
T Consensus 381 yRLyse~~~ 389 (845)
T COG1643 381 YRLYSEEDF 389 (845)
T ss_pred EEecCHHHH
Confidence 999998654
No 111
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.90 E-value=1.4e-21 Score=193.67 Aligned_cols=369 Identities=19% Similarity=0.215 Sum_probs=229.9
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc-CCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~-~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
.+++||.+.+.+++...-.|-++|+...+|.|||+.. +.++..+... ..+| .-||++|...|.+ |.++++++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~G-PfLVi~P~StL~N-W~~Ef~rf~P-- 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPG-PFLVIAPKSTLDN-WMNEFKRFTP-- 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCC-CeEEEeeHhhHHH-HHHHHHHhCC--
Confidence 7999999999988876666788999999999999864 4456556552 3344 5799999988765 8999999987
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
++++.+++|+.........-. ......+|+|+|++..+.--.- +.--.++++||||||+
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~------------------~~~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaHR 300 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDI------------------MLPGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAHR 300 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHh------------------hccCCCceEeehHHHHHhhHHH---HhcCCceEEEechhhh
Confidence 589999999874333322100 1123579999999988764221 2223589999999999
Q ss_pred hhhHhhhhHHHHHHhhcccCc---------cccccc-c---cccccccccchhhhh------------------------
Q 009641 209 LLREAYQAWLPTVLQLTRSDN---------ENRFSD-A---STFLPSAFGSLKTIR------------------------ 251 (530)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~---------~~~~~~-~---~~~~~~~~~~~~~~~------------------------ 251 (530)
+-+... .+..++..+.... .+-..+ | .-.+|..+.....+.
T Consensus 301 iKN~~s--~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~p 378 (971)
T KOG0385|consen 301 IKNEKS--KLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRP 378 (971)
T ss_pred hcchhh--HHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhH
Confidence 865432 2223332222110 000000 0 001222222211100
Q ss_pred ----ccccccCCCCCCCCceeeEEEeEeec----------CC-----------------hhhhhhhccCCceEEecCCcc
Q 009641 252 ----RCGVERGFKDKPYPRLVKMVLSATLT----------QD-----------------PNKLAQLDLHHPLFLTTGETR 300 (530)
Q Consensus 252 ----~~~~~~~~~~~~~~~~~~i~~SaT~~----------~~-----------------~~~~~~~~~~~~~~~~~~~~~ 300 (530)
+.... .....+.+.-..+..+-|.. .+ +.-..+....+|..+......
T Consensus 379 FlLRR~K~d-Ve~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg 457 (971)
T KOG0385|consen 379 FLLRRIKSD-VEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG 457 (971)
T ss_pred HHHHHHHHh-HhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC
Confidence 00000 01111111111222111110 00 000111233455544332111
Q ss_pred ccCcccceeeEeeccCCCcHHHHHHHHHh--cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHH
Q 009641 301 YKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378 (530)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 378 (530)
. ....-........|...|..+|.. ..++++|||..-....+-+-.+..-.+ +..+.+.|.++.++|...+
T Consensus 458 ~----pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~---y~ycRiDGSt~~eeR~~aI 530 (971)
T KOG0385|consen 458 P----PYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRG---YEYCRLDGSTSHEEREDAI 530 (971)
T ss_pred C----CCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcC---ceeEeecCCCCcHHHHHHH
Confidence 0 001111223456777777777764 367899999988888888888877665 8999999999999999999
Q ss_pred HHHhcCC---ccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEE--Eeecch--HHHHHHHH
Q 009641 379 KAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKDE--VKRFKKLL 451 (530)
Q Consensus 379 ~~f~~g~---~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~--~~~~~~--~~~~~~~~ 451 (530)
+.|.... .-.|++|.+.+-|||+..+++||.||..++|..-+|..-||.|.|+...+.+ +++.+- ...+++..
T Consensus 531 ~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~ 610 (971)
T KOG0385|consen 531 EAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAA 610 (971)
T ss_pred HhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHH
Confidence 9998653 4568999999999999999999999999999999999999999999865544 566653 23344444
Q ss_pred HHh
Q 009641 452 QKA 454 (530)
Q Consensus 452 ~~~ 454 (530)
.++
T Consensus 611 ~KL 613 (971)
T KOG0385|consen 611 AKL 613 (971)
T ss_pred HHh
Confidence 443
No 112
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.2e-21 Score=195.99 Aligned_cols=355 Identities=18% Similarity=0.188 Sum_probs=220.5
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|++.|.-+.-.+. .| -++.+.||+|||+++.+|++..... |..+.|++|+..||.|-++++..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll----~G--~VaEM~TGEGKTLvA~l~a~l~AL~----G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLL----AG--DVIEMATGEGKTLAGAIAAAGYALQ----GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHh----CC--CcccccCCCCHHHHHHHHHHHHHHc----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 786 89999988765443 24 4889999999999999998877665 3479999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcC-----CCCCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~-----~~~~~~~~~ 199 (530)
.++|++++++.++.+..+.... ..+||+++|..-| ++.|+.. .....+.+.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~a-----------------------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~ 200 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAA-----------------------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPD 200 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHH-----------------------HcCCCEEcCCcccccccchhhhccChHhhcCCccc
Confidence 9999999999998775544322 4569999998765 2333221 112345688
Q ss_pred EEEEechhHhhhH---------------hhhhHHHHHHhhcccCccccc------------------------ccccccc
Q 009641 200 YLVVDETDRLLRE---------------AYQAWLPTVLQLTRSDNENRF------------------------SDASTFL 240 (530)
Q Consensus 200 ~lViDEah~~~~~---------------~~~~~~~~i~~~~~~~~~~~~------------------------~~~~~~~ 240 (530)
+.||||+|.++=+ .....+..+...+.....-.. ..+....
T Consensus 201 faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~ 280 (764)
T PRK12326 201 VAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEH 280 (764)
T ss_pred eeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcch
Confidence 9999999986411 122233333333322100000 0000000
Q ss_pred -ccccc----chhh---hhc-----------------ccc---ccCCCC------------CCCCc--------------
Q 009641 241 -PSAFG----SLKT---IRR-----------------CGV---ERGFKD------------KPYPR-------------- 266 (530)
Q Consensus 241 -~~~~~----~~~~---~~~-----------------~~~---~~~~~~------------~~~~~-------------- 266 (530)
...+. .+.. +.+ ++. .+.+.+ ..-+.
T Consensus 281 ~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr 360 (764)
T PRK12326 281 VGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIG 360 (764)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHH
Confidence 00000 0000 000 000 000000 00000
Q ss_pred --eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH--hcCCCcEEEEcCCh
Q 009641 267 --LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSV 342 (530)
Q Consensus 267 --~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~iVf~~s~ 342 (530)
.....||+|......++...+--+.+.+++.... .... ..-.+......|...+..-+. ...+.|+||.|.|+
T Consensus 361 ~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~--~R~d-~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI 437 (764)
T PRK12326 361 RYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPN--IRED-EADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDV 437 (764)
T ss_pred hcchheeecCCChhHHHHHHHHhCCcEEECCCCCCc--eeec-CCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCH
Confidence 0134566666555555544443333333322111 1000 011222334456666665543 24678999999999
Q ss_pred HHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCC-ccEEEEecccccCCCCCC---------------CCE
Q 009641 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG---------------VNN 406 (530)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiDip~---------------~~~ 406 (530)
+..+.+++.|.+.+ ++..++++.....+-..+-+ .|+ -.|.|||++++||.||.- =-+
T Consensus 438 ~~SE~ls~~L~~~g---I~h~vLNAk~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLh 511 (764)
T PRK12326 438 AESEELAERLRAAG---VPAVVLNAKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLH 511 (764)
T ss_pred HHHHHHHHHHHhCC---CcceeeccCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcE
Confidence 99999999999876 77777887644333222222 343 468999999999999872 127
Q ss_pred EEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 407 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 407 VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
||....+.|..--.|-.||+||.|.+|.+..|++-+|
T Consensus 512 VIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 512 VIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred EEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999999999999999999876
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.89 E-value=3.6e-21 Score=202.56 Aligned_cols=320 Identities=15% Similarity=0.134 Sum_probs=184.5
Q ss_pred ccchhhHHHHHHhcCCCCC------CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~------~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
-++.+|..|+..++..+.. .+..++++|||||||++.+..+...+ . ..+..++|||+|+.+|..|+.+.+..
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~-~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E-LLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h-hcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 3889999999988776544 35799999999999998766544333 2 23456899999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHHHhcC-CCCCCCCc-cE
Q 009641 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINAT-RGFTLEHL-CY 200 (530)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~-~~~~~~~~-~~ 200 (530)
++... ..+..+...- ...+. ....|+|+|.++|...+... ..+..... .+
T Consensus 316 ~~~~~------~~~~~s~~~L---------------------~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 316 LQKDC------AERIESIAEL---------------------KRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred hCCCC------CcccCCHHHH---------------------HHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 85321 0111111111 11111 23589999999998644321 11222122 38
Q ss_pred EEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCCh
Q 009641 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (530)
Q Consensus 201 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 280 (530)
||+||||+.....+...+. ..++ ....+.|||||....
T Consensus 369 vIvDEaHrs~~~~~~~~l~---~~~p---------------------------------------~a~~lGfTaTP~~~~ 406 (667)
T TIGR00348 369 VIFDEAHRSQYGELAKNLK---KALK---------------------------------------NASFFGFTGTPIFKK 406 (667)
T ss_pred EEEEcCccccchHHHHHHH---hhCC---------------------------------------CCcEEEEeCCCcccc
Confidence 9999999875444333332 2222 114688888885321
Q ss_pred hh----hhhhccCCc-----------------eEEecCCccccC-----cccceeeEeecc-------------------
Q 009641 281 NK----LAQLDLHHP-----------------LFLTTGETRYKL-----PERLESYKLICE------------------- 315 (530)
Q Consensus 281 ~~----~~~~~~~~~-----------------~~~~~~~~~~~~-----~~~~~~~~~~~~------------------- 315 (530)
.. ........+ +..........+ ............
T Consensus 407 d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 486 (667)
T TIGR00348 407 DRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTK 486 (667)
T ss_pred cccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 11 000000011 111000000000 000000000000
Q ss_pred ----CCCcHHHHHH-HHHh----c--CCCcEEEEcCChHHHHHHHHHHHhcCCC--cceEEEccccCCHH----------
Q 009641 316 ----SKLKPLYLVA-LLQS----L--GEEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQS---------- 372 (530)
Q Consensus 316 ----~~~k~~~l~~-~l~~----~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~---------- 372 (530)
.......+.. +++. . .+.+++|||.++.+|..+.+.|.+.... +.....+++..+..
T Consensus 487 ~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~ 566 (667)
T TIGR00348 487 KILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHI 566 (667)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHh
Confidence 0000111111 1111 1 2489999999999999999988765322 12344555543322
Q ss_pred -----------HHHHHHHHHhc-CCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhc-CC--CC-ccEE
Q 009641 373 -----------VRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR-AG--QL-GRCF 436 (530)
Q Consensus 373 -----------~R~~~~~~f~~-g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR-~g--~~-g~~i 436 (530)
....++++|++ +..+|||+++++..|+|.|.+++++...+..+ ..++|.+||+.| .+ +. |..+
T Consensus 567 ~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~Iv 645 (667)
T TIGR00348 567 RTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIV 645 (667)
T ss_pred ccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEE
Confidence 23478889976 68899999999999999999997777665554 468999999999 33 22 4455
Q ss_pred EEeec
Q 009641 437 TLLHK 441 (530)
Q Consensus 437 ~~~~~ 441 (530)
-|+..
T Consensus 646 Dy~g~ 650 (667)
T TIGR00348 646 DYRGL 650 (667)
T ss_pred ECcCh
Confidence 55544
No 114
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.89 E-value=3.7e-22 Score=201.07 Aligned_cols=303 Identities=18% Similarity=0.166 Sum_probs=189.4
Q ss_pred CccchhhHHHHHHhcCCCCCCC-cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~-~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 127 (530)
..++.||..|+..+.+.+..|+ .+|+++.||+|||.+++. ++.+|.+.. .-.++|+|+-+++|++|.+..+.++.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~-~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSG-WVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcc-hhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 5799999999999998888884 499999999999998754 555555543 3458999999999999999999998776
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcC----CCCCCCCccEEEE
Q 009641 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 203 (530)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~----~~~~~~~~~~lVi 203 (530)
. -.+..+.+... ...++|.++|.+++...+... ..+....|++||+
T Consensus 242 ~-~~~n~i~~~~~-----------------------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvI 291 (875)
T COG4096 242 G-TKMNKIEDKKG-----------------------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVI 291 (875)
T ss_pred c-cceeeeecccC-----------------------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEe
Confidence 3 23333332211 123599999999998887653 2345677999999
Q ss_pred echhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhh
Q 009641 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283 (530)
Q Consensus 204 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 283 (530)
||||+-.-..+. .|+..+.+. .+.++||+......-
T Consensus 292 DEaHRgi~~~~~----~I~dYFdA~----------------------------------------~~gLTATP~~~~d~~ 327 (875)
T COG4096 292 DEAHRGIYSEWS----SILDYFDAA----------------------------------------TQGLTATPKETIDRS 327 (875)
T ss_pred chhhhhHHhhhH----HHHHHHHHH----------------------------------------HHhhccCcccccccc
Confidence 999985333332 333222110 111133332211110
Q ss_pred -------------------hhhccC--CceEEecCCcc-----ccC-------cccc---eeeEeecc------CCCcHH
Q 009641 284 -------------------AQLDLH--HPLFLTTGETR-----YKL-------PERL---ESYKLICE------SKLKPL 321 (530)
Q Consensus 284 -------------------~~~~~~--~~~~~~~~~~~-----~~~-------~~~~---~~~~~~~~------~~~k~~ 321 (530)
..-++. +++.+.+.... ... -..+ .+.+-..+ -.....
T Consensus 328 T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~ 407 (875)
T COG4096 328 TYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTE 407 (875)
T ss_pred cccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHH
Confidence 001111 11111111000 000 0000 00000000 011112
Q ss_pred ----HHHHHHHh--cC--CCcEEEEcCChHHHHHHHHHHHhcCC-Cc-ceEEEccccCCHHHHHHHHHHHhc--CCccEE
Q 009641 322 ----YLVALLQS--LG--EEKCIVFTSSVESTHRLCTLLNHFGE-LR-IKIKEYSGLQRQSVRSKTLKAFRE--GKIQVL 389 (530)
Q Consensus 322 ----~l~~~l~~--~~--~~~~iVf~~s~~~~~~l~~~L~~~~~-~~-~~v~~~h~~~~~~~R~~~~~~f~~--g~~~iL 389 (530)
.+.+.+.. .. .+|+||||.+..+|+.+...|..... .+ --+..+.|+-.. -...+..|.. .-..|.
T Consensus 408 ~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~Ia 485 (875)
T COG4096 408 TVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQALIDNFIDKEKYPRIA 485 (875)
T ss_pred HHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHHHHHHHhcCCCCceE
Confidence 23333333 22 46999999999999999999975432 11 234556665433 3455666664 346788
Q ss_pred EEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcC
Q 009641 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (530)
Q Consensus 390 VaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~ 429 (530)
|+.+++..|||+|.|..+|++..-.|...|.||+||+-|.
T Consensus 486 itvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 486 ITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999999999999999999999993
No 115
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2.1e-21 Score=200.96 Aligned_cols=355 Identities=18% Similarity=0.203 Sum_probs=216.5
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|.-. .+...+.-|+.+.||+|||+++.+|++-.... |..+.|++|+..||.|-++++..+.
T Consensus 79 lGm-~~ydVQliG------g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~----G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLIG------GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS----GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHHh------hhHhccCccccccCCCCChHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 675 899999543 33335667999999999999999999876665 3479999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcCC-----CCCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (530)
.++|++++++.++.+..+.... ..+||+++|..-| ++.|+..- ....+.+.
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~-----------------------Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~ 204 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAA-----------------------YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELN 204 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHH-----------------------hcCCEEEEcccccccchhhccceechhhhcccccc
Confidence 9999999999998776554332 3479999999876 33443311 11236799
Q ss_pred EEEEechhHhhhH----------------hhhhHHHHHHhhcccCc---------cccc-----------ccc-----cc
Q 009641 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN---------ENRF-----------SDA-----ST 238 (530)
Q Consensus 200 ~lViDEah~~~~~----------------~~~~~~~~i~~~~~~~~---------~~~~-----------~~~-----~~ 238 (530)
++||||+|+++=+ .....+..+...+.... ...+ .+. ..
T Consensus 205 ~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~ 284 (913)
T PRK13103 205 FAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEE 284 (913)
T ss_pred eeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHH
Confidence 9999999996311 11222333333221100 0000 000 00
Q ss_pred cc---------ccccc--chhhh-------h------c-----------------ccc---ccCCCCC------------
Q 009641 239 FL---------PSAFG--SLKTI-------R------R-----------------CGV---ERGFKDK------------ 262 (530)
Q Consensus 239 ~~---------~~~~~--~~~~~-------~------~-----------------~~~---~~~~~~~------------ 262 (530)
.+ ...+. ..... + + +|. .+.+.+.
T Consensus 285 ~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~ 364 (913)
T PRK13103 285 MLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLN 364 (913)
T ss_pred HhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCC
Confidence 00 00000 00000 0 0 000 0000000
Q ss_pred CCCc----------------eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHH
Q 009641 263 PYPR----------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (530)
Q Consensus 263 ~~~~----------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (530)
.-+. .+...||+|......++...+--+.+.+++.... .... ..-.+......|...+.+-
T Consensus 365 I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~--~R~D-~~d~vy~t~~eK~~Ai~~e 441 (913)
T PRK13103 365 IQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPL--ARKD-FNDLVYLTAEEKYAAIITD 441 (913)
T ss_pred cCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCc--cccc-CCCeEEcCHHHHHHHHHHH
Confidence 0000 0122344444433333333333333333322211 1011 1112333445677666665
Q ss_pred HH--hcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcC-CccEEEEecccccCCCCC-
Q 009641 327 LQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVE- 402 (530)
Q Consensus 327 l~--~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiDip- 402 (530)
+. ...+.|+||-+.|++..+.++..|...+ ++..++++.....+-..+- +.| .-.|.|||++++||-||.
T Consensus 442 i~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g---i~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkL 515 (913)
T PRK13103 442 IKECMALGRPVLVGTATIETSEHMSNLLKKEG---IEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILL 515 (913)
T ss_pred HHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC---CcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEec
Confidence 54 3368899999999999999999999876 5555666654433322222 344 346899999999999994
Q ss_pred ------------------------------------CCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 403 ------------------------------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 403 ------------------------------------~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
+=-+||-...+.|..--.|-.||+||.|.+|.+-.|++-+|
T Consensus 516 g~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 516 GGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred CCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 12278999999999999999999999999999999999876
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=3.8e-21 Score=197.74 Aligned_cols=327 Identities=19% Similarity=0.183 Sum_probs=203.6
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
..+++-|..|+..+..........++.+.||||||.+|+-.+.+.+.. |..+|||+|-.+|..|+.+.++..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~----GkqvLvLVPEI~Ltpq~~~rf~~rF--- 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ----GKQVLVLVPEIALTPQLLARFKARF--- 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc----CCEEEEEeccccchHHHHHHHHHHh---
Confidence 368889999999887755223679999999999999998877777665 4489999999999999999999875
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechh
Q 009641 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (530)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 207 (530)
|.++.+++++.+..+.. +.|+... ....|+|||-.-+ ...+.++++||+||-|
T Consensus 270 g~~v~vlHS~Ls~~er~------------------~~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEH 323 (730)
T COG1198 270 GAKVAVLHSGLSPGERY------------------RVWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEH 323 (730)
T ss_pred CCChhhhcccCChHHHH------------------HHHHHHhcCCceEEEEechhh--------cCchhhccEEEEeccc
Confidence 47888999988876663 4466555 4589999992222 2358899999999999
Q ss_pred Hhh---hHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhh
Q 009641 208 RLL---REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284 (530)
Q Consensus 208 ~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 284 (530)
.-. +++..-+.+.+.-... .....++|+-|||++ ++.+.
T Consensus 324 D~sYKq~~~prYhARdvA~~Ra------------------------------------~~~~~pvvLgSATPS--LES~~ 365 (730)
T COG1198 324 DSSYKQEDGPRYHARDVAVLRA------------------------------------KKENAPVVLGSATPS--LESYA 365 (730)
T ss_pred cccccCCcCCCcCHHHHHHHHH------------------------------------HHhCCCEEEecCCCC--HHHHH
Confidence 521 0000111111111000 001226889999985 44333
Q ss_pred hhccCCceEEecCCccc-cCcccceeeEeeccCCCc----HHHHHHHHHh--cCCCcEEEEcCChH--------------
Q 009641 285 QLDLHHPLFLTTGETRY-KLPERLESYKLICESKLK----PLYLVALLQS--LGEEKCIVFTSSVE-------------- 343 (530)
Q Consensus 285 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k----~~~l~~~l~~--~~~~~~iVf~~s~~-------------- 343 (530)
.........+....... .....+.-.......... -..|...++. ..+.++|+|.|.+-
T Consensus 366 ~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~ 445 (730)
T COG1198 366 NAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIA 445 (730)
T ss_pred hhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcc
Confidence 32111112222111111 111111111111111111 1233333332 24567777766622
Q ss_pred ----------------------------------------------HHHHHHHHHHhcCCCcceEEEccccCCHH--HHH
Q 009641 344 ----------------------------------------------STHRLCTLLNHFGELRIKIKEYSGLQRQS--VRS 375 (530)
Q Consensus 344 ----------------------------------------------~~~~l~~~L~~~~~~~~~v~~~h~~~~~~--~R~ 375 (530)
-++++.+.|.... .+.++..+.++.+.. .-.
T Consensus 446 ~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F-P~~rv~r~d~Dtt~~k~~~~ 524 (730)
T COG1198 446 ECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF-PGARIIRIDSDTTRRKGALE 524 (730)
T ss_pred cCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC-CCCcEEEEccccccchhhHH
Confidence 2344444444332 234666666665442 245
Q ss_pred HHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC------------ChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 376 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------YIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 376 ~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~------------s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
..+..|..|+.+|||.|++++.|.|+|+++.|...|... ....+.|-.||+||.+.+|.+++-....|
T Consensus 525 ~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 525 DLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 779999999999999999999999999999877655431 23457799999999999998888665544
Q ss_pred HHHH
Q 009641 444 VKRF 447 (530)
Q Consensus 444 ~~~~ 447 (530)
...+
T Consensus 605 hp~i 608 (730)
T COG1198 605 HPAI 608 (730)
T ss_pred cHHH
Confidence 3333
No 117
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2.1e-21 Score=191.15 Aligned_cols=307 Identities=21% Similarity=0.274 Sum_probs=198.5
Q ss_pred hcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH-hccccCceEEEeecCCc
Q 009641 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSS 140 (530)
Q Consensus 62 ~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~-~~~~~~~~v~~~~g~~~ 140 (530)
++..+-.++-++|.|.||||||...--.+.+.-... .| ++-+.=|+|--|.-+++.... ..-.+|-.|+...--.+
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~--~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed 135 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS--SG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFED 135 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc--CC-cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecc
Confidence 343333567799999999999976322232222221 22 344445998877777765443 33333333332211110
Q ss_pred hHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHH
Q 009641 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220 (530)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 220 (530)
. ......|.++|-+.|++.+.. .-.++.+++||+||||.- .-..+.+-.
T Consensus 136 ~---------------------------ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHER--sl~TDiLlG 184 (674)
T KOG0922|consen 136 S---------------------------TSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHER--SLHTDILLG 184 (674)
T ss_pred c---------------------------CCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhh--hhHHHHHHH
Confidence 0 012348999999999987764 345789999999999962 111122333
Q ss_pred HHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCcc
Q 009641 221 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300 (530)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (530)
+++.+-... +.++.|++|||+ +...+.+.+..-|++...+..
T Consensus 185 lLKki~~~R-----------------------------------~~LklIimSATl--da~kfS~yF~~a~i~~i~GR~- 226 (674)
T KOG0922|consen 185 LLKKILKKR-----------------------------------PDLKLIIMSATL--DAEKFSEYFNNAPILTIPGRT- 226 (674)
T ss_pred HHHHHHhcC-----------------------------------CCceEEEEeeee--cHHHHHHHhcCCceEeecCCC-
Confidence 333222111 335899999999 566666666554554433321
Q ss_pred ccCcccceeeEeec-cCCCcHHHH---HHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCC-C----cceEEEccccCCH
Q 009641 301 YKLPERLESYKLIC-ESKLKPLYL---VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-L----RIKIKEYSGLQRQ 371 (530)
Q Consensus 301 ~~~~~~~~~~~~~~-~~~~k~~~l---~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~-~----~~~v~~~h~~~~~ 371 (530)
+ .++.++... ..+.-...+ ..+-...+.+-+|||.+..++.+.+++.|.+... . ..-+..+||.++.
T Consensus 227 f----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~ 302 (674)
T KOG0922|consen 227 F----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPS 302 (674)
T ss_pred C----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCH
Confidence 1 122222221 122222222 2233345778999999999999999999876521 1 1135678999999
Q ss_pred HHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC------------------CCChhHHHHHHhhhhcCCCCc
Q 009641 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLG 433 (530)
Q Consensus 372 ~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~------------------p~s~~~y~Qr~GR~gR~g~~g 433 (530)
++..++.+.-..|..+|+++|++++..+.||++..||+-+. |-|-.+-.||.|||||.| +|
T Consensus 303 e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pG 381 (674)
T KOG0922|consen 303 EEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PG 381 (674)
T ss_pred HHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-Cc
Confidence 99999988888899999999999999999999999998553 346678889999999985 89
Q ss_pred cEEEEeecchHH
Q 009641 434 RCFTLLHKDEVK 445 (530)
Q Consensus 434 ~~i~~~~~~~~~ 445 (530)
.|+-++++++..
T Consensus 382 kcyRLYte~~~~ 393 (674)
T KOG0922|consen 382 KCYRLYTESAYD 393 (674)
T ss_pred eEEEeeeHHHHh
Confidence 999999988754
No 118
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.88 E-value=4.2e-20 Score=197.65 Aligned_cols=379 Identities=17% Similarity=0.158 Sum_probs=209.1
Q ss_pred HHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHH-HHHHH
Q 009641 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV-KDVFA 122 (530)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~-~~~l~ 122 (530)
...|| ++|+-|.+....+...+..+..+++.|+||+|||++|++|++... .+.++||++||++|++|+ .+.+.
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHH
Confidence 33477 899999998887777777788899999999999999999988754 245899999999999999 57788
Q ss_pred HhccccCceEEEeecCCchHHHH--HHHhh-----------------------cCcccc--------------------C
Q 009641 123 AIAPAVGLSVGLAVGQSSIADEI--SELIK-----------------------RPKLEA--------------------G 157 (530)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~--~~~~~-----------------------~~~~~~--------------------~ 157 (530)
.+.+..++++..+.|+.+.--.. ..... ..+... +
T Consensus 314 ~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~ 393 (820)
T PRK07246 314 AIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLS 393 (820)
T ss_pred HHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCC
Confidence 88777788888777765421110 00000 000000 0
Q ss_pred -ccCC-chhHH---HhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHh---------hhhHHHHH--
Q 009641 158 -ICYD-PEDVL---QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---------YQAWLPTV-- 221 (530)
Q Consensus 158 -~~~~-~~~~~---~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~---------~~~~~~~i-- 221 (530)
.|-. ..-.+ +.-...+||+|++...|+..+.... .+...+++||||||++.+.. +......+
T Consensus 394 ~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~ 471 (820)
T PRK07246 394 QSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQK 471 (820)
T ss_pred CCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHH
Confidence 0100 01112 2223458999999998888775432 25679999999999985321 00001100
Q ss_pred -H----------------h-------hcccCcc--------------------cccccccccccccccchhhhhcc----
Q 009641 222 -L----------------Q-------LTRSDNE--------------------NRFSDASTFLPSAFGSLKTIRRC---- 253 (530)
Q Consensus 222 -~----------------~-------~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~---- 253 (530)
+ . .+..... .........+.. .....++...
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~-~~~~~W~e~~~~~~ 550 (820)
T PRK07246 472 ALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFAT-AEGDYWLESEKQSE 550 (820)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEecCCCC
Confidence 0 0 0000000 000000000000 0000000000
Q ss_pred ----cccc------CCCCCCCCceeeEEEeEeec--CChhhhhhhccCCceEEecCCccccCcccceeeEeec---cC--
Q 009641 254 ----GVER------GFKDKPYPRLVKMVLSATLT--QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC---ES-- 316 (530)
Q Consensus 254 ----~~~~------~~~~~~~~~~~~i~~SaT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 316 (530)
.+.. .+..........|++|||++ +........++.......... +..-+...+.. +.
T Consensus 551 ~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~-----~~~~~~~~~i~~~~p~~~ 625 (820)
T PRK07246 551 KRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEK-----DKKQDQLVVVDQDMPLVT 625 (820)
T ss_pred cceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCC-----ChHHccEEEeCCCCCCCC
Confidence 0000 00000111236789999996 222211222332222111110 00001111111 10
Q ss_pred ---CC-cHHHHHHHHH--hcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEE
Q 009641 317 ---KL-KPLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (530)
Q Consensus 317 ---~~-k~~~l~~~l~--~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLV 390 (530)
.+ -...+...+. ...+++++|+++|.+..+.+++.|.... ..+ ...|... .|.+++++|++++..||+
T Consensus 626 ~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~---~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLl 699 (820)
T PRK07246 626 ETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQ---VSH-LAQEKNG--TAYNIKKRFDRGEQQILL 699 (820)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcC---CcE-EEeCCCc--cHHHHHHHHHcCCCeEEE
Confidence 00 1112222221 1357899999999999999999997542 444 3444322 256789999999899999
Q ss_pred EecccccCCCCCC--CCEEEEccCCC----C--------------------------hhHHHHHHhhhhcCCCCccEEEE
Q 009641 391 SSDAMTRGMDVEG--VNNVVNYDKPA----Y--------------------------IKTYIHRAGRTARAGQLGRCFTL 438 (530)
Q Consensus 391 aT~~~~~GiDip~--~~~VI~~~~p~----s--------------------------~~~y~Qr~GR~gR~g~~g~~i~~ 438 (530)
+|+.+++|||+|+ ...||...+|. + ...+.|.+||.-|...+--++++
T Consensus 700 G~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 700 GLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred ecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999984 55667766652 1 22355999999998655334555
Q ss_pred eecc
Q 009641 439 LHKD 442 (530)
Q Consensus 439 ~~~~ 442 (530)
+++.
T Consensus 780 lD~R 783 (820)
T PRK07246 780 LDRR 783 (820)
T ss_pred ECCc
Confidence 5544
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=2.6e-20 Score=188.84 Aligned_cols=149 Identities=18% Similarity=0.106 Sum_probs=100.5
Q ss_pred CCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
+| .|..||++.++. .-.+..++|.|||.+|||++....+-..+... ...-+|+++||++|++|....+.....
T Consensus 509 dF-~Pd~WQ~elLDs----vDr~eSavIVAPTSaGKTfisfY~iEKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDS----VDRNESAVIVAPTSAGKTFISFYAIEKVLRES--DSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred cc-CCcHHHHHHhhh----hhcccceEEEeeccCCceeccHHHHHHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 45 789999997554 23578899999999999997655444444443 233689999999999999988877653
Q ss_pred ccCce-EEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcC--CCCCCCCccEEEE
Q 009641 127 AVGLS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVV 203 (530)
Q Consensus 127 ~~~~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~--~~~~~~~~~~lVi 203 (530)
...+. .....|....+.+ .-.-+|+|+|+-|+-+-..+... ......+++++|+
T Consensus 582 ~~t~~rg~sl~g~ltqEYs-----------------------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIf 638 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYS-----------------------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIF 638 (1330)
T ss_pred cCccccchhhHhhhhHHhc-----------------------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEe
Confidence 32221 1222222221111 00125899999999998887763 2235678999999
Q ss_pred echhHhhhHhhhhHHHHHHhhc
Q 009641 204 DETDRLLREAYQAWLPTVLQLT 225 (530)
Q Consensus 204 DEah~~~~~~~~~~~~~i~~~~ 225 (530)
||+|.+.+..-+-..++++-+.
T Consensus 639 DEVH~iG~~ed~l~~Eqll~li 660 (1330)
T KOG0949|consen 639 DEVHLIGNEEDGLLWEQLLLLI 660 (1330)
T ss_pred chhhhccccccchHHHHHHHhc
Confidence 9999987765555555555543
No 120
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.85 E-value=2e-20 Score=194.23 Aligned_cols=371 Identities=19% Similarity=0.207 Sum_probs=232.1
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
.+++.||.+.+..++..+..+.++|+...+|.|||... +..+..+.....-....||++|...+.. |.+.+... +
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w---~ 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETW---T 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHH---h
Confidence 58999999999998888888999999999999999753 3344444443212235899999977654 66666665 3
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
++++.+++|......-.+...-.... . .-.-..+++++|++.++.--...+.+ .+.+++|||||+
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~--------~----~~~lkf~~lltTye~~LkDk~~L~~i---~w~~~~vDeahr 508 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSS--------N----TKKLKFNALLTTYEIVLKDKAELSKI---PWRYLLVDEAHR 508 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecC--------C----ccccccceeehhhHHHhccHhhhccC---CcceeeecHHhh
Confidence 78999999988655554432110000 0 00013689999999886533221222 478999999999
Q ss_pred hhhHhh----------------------hhHHHHHHhhcccCcccccccccccccccccc-----hhhhh--------cc
Q 009641 209 LLREAY----------------------QAWLPTVLQLTRSDNENRFSDASTFLPSAFGS-----LKTIR--------RC 253 (530)
Q Consensus 209 ~~~~~~----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--------~~ 253 (530)
+-+... .+.+..+.+++....+..|..+..+.... +. +..++ +.
T Consensus 509 LkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr 587 (1373)
T KOG0384|consen 509 LKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRR 587 (1373)
T ss_pred cCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHH
Confidence 854321 23344444444444444444444443322 10 00000 00
Q ss_pred ccccCCCCCCCCceeeE--EEeEe--------ecCChhhh-----------------hhhccCCceEEecCCccccCccc
Q 009641 254 GVERGFKDKPYPRLVKM--VLSAT--------LTQDPNKL-----------------AQLDLHHPLFLTTGETRYKLPER 306 (530)
Q Consensus 254 ~~~~~~~~~~~~~~~~i--~~SaT--------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 306 (530)
...+.-+..+...=+++ -+|+- ++.+...+ ......+|..+.......-....
T Consensus 588 ~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~ 667 (1373)
T KOG0384|consen 588 LKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFR 667 (1373)
T ss_pred HHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhh
Confidence 00111111111111111 12211 00110000 11123344444332211100000
Q ss_pred ----ceeeEeeccCCCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHH
Q 009641 307 ----LESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380 (530)
Q Consensus 307 ----~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 380 (530)
-..+........|+..|..+|... .++++|||..-+...+.|+++|...+ ++.-.+.|.+..+.|.+++..
T Consensus 668 ~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~---ypfQRLDGsvrgelRq~AIDh 744 (1373)
T KOG0384|consen 668 DKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG---YPFQRLDGSVRGELRQQAIDH 744 (1373)
T ss_pred hcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC---CcceeccCCcchHHHHHHHHh
Confidence 001112223455666666666533 56899999999999999999999877 899999999999999999999
Q ss_pred Hhc---CCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCc--cEEEEeecch
Q 009641 381 FRE---GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDE 443 (530)
Q Consensus 381 f~~---g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g--~~i~~~~~~~ 443 (530)
|.+ ...-.|+||.+.+-|||+..+++||+||.-++|..-+|...||.|.|++. .+|-|++.+-
T Consensus 745 Fnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 745 FNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred ccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 985 45778999999999999999999999999999999999999999999884 5666788773
No 121
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.85 E-value=1.6e-19 Score=186.20 Aligned_cols=131 Identities=24% Similarity=0.285 Sum_probs=100.4
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|++.|.-+ .+...+.-|+.+.||.|||+++.+|++-.... |..|.|++++..||.+-++++..+.
T Consensus 73 lG~-r~ydvQlig------~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~----G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIG------GLVLNDGKIAEMKTGEGKTLVATLPAYLNALT----GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhh------hHhhcCCccccccCCCCchHHHHHHHHHHHhc----CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 787 799999654 23335678999999999999999998644433 4479999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcC-----CCCCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~-----~~~~~~~~~ 199 (530)
.++|+++++..++.+..+.... ..+||+++|..-| ++.|+.. .....+.+.
T Consensus 142 ~~LGLsvg~i~~~~~~~err~a-----------------------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~ 198 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKN-----------------------YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFN 198 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHh-----------------------cCCCCEecCCccccccchhhccCcChHHhhccccc
Confidence 9999999999888876655432 5579999998644 2333321 112346689
Q ss_pred EEEEechhHhh
Q 009641 200 YLVVDETDRLL 210 (530)
Q Consensus 200 ~lViDEah~~~ 210 (530)
+.||||+|.++
T Consensus 199 faIVDEvDSiL 209 (870)
T CHL00122 199 YCIIDEVDSIL 209 (870)
T ss_pred eeeeecchhhe
Confidence 99999999863
No 122
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=5.2e-20 Score=188.59 Aligned_cols=355 Identities=18% Similarity=0.203 Sum_probs=218.4
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|.-.--. ....-|+.+.||-|||+++.+|++-+... |..|-|++.+.-||..-++++..+.
T Consensus 75 lG~-r~ydVQliGglv------Lh~G~IAEMkTGEGKTLvAtLpayLnAL~----GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGII------LDLGSVAEMKTGEGKTITSIAPVYLNALT----GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHH------HhcCCeeeecCCCCccHHHHHHHHHHHhc----CCceEEEecchhhhhhhHHHHHHHH
Confidence 686 899999765322 13345899999999999999998655444 3469999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcCCC-----CCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (530)
.++|++|++...+........ ...+||+++|..-| ++.|+..-. ...+.+.
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~-----------------------aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~ 200 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKRE-----------------------AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLN 200 (925)
T ss_pred HHhCCceeeeCCCCChHHHHH-----------------------hccCCCeeecCcccchhhhhhcccccHHHhcCcccc
Confidence 999999999988766554432 24579999998765 344443211 2246688
Q ss_pred EEEEechhHhhh----------------HhhhhHHHHHHhhcccCc--------------------------cccccccc
Q 009641 200 YLVVDETDRLLR----------------EAYQAWLPTVLQLTRSDN--------------------------ENRFSDAS 237 (530)
Q Consensus 200 ~lViDEah~~~~----------------~~~~~~~~~i~~~~~~~~--------------------------~~~~~~~~ 237 (530)
+.||||+|.++= ......+..+...+.... .+.+..+.
T Consensus 201 faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n 280 (925)
T PRK12903 201 FCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIEN 280 (925)
T ss_pred eeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhh
Confidence 999999998631 012222233333222100 00000000
Q ss_pred c----cccccccchhhhhc-----------------ccc---ccCCC------------CCCCCc---------------
Q 009641 238 T----FLPSAFGSLKTIRR-----------------CGV---ERGFK------------DKPYPR--------------- 266 (530)
Q Consensus 238 ~----~~~~~~~~~~~~~~-----------------~~~---~~~~~------------~~~~~~--------------- 266 (530)
. ....++.....+.+ +|. .+.+. -...+.
T Consensus 281 ~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~ 360 (925)
T PRK12903 281 SELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRL 360 (925)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHh
Confidence 0 00000000000000 000 00000 000000
Q ss_pred -eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH--hcCCCcEEEEcCChH
Q 009641 267 -LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSVE 343 (530)
Q Consensus 267 -~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~iVf~~s~~ 343 (530)
.+...||+|......++...+-.+.+.+++...... .. ..-.+......|...+...+. ...+.|+||.|.|++
T Consensus 361 Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R--~D-~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 361 FKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIR--KD-EPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred cchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeee--ee-CCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 023456777655444555444444444433221100 00 111233345566666666554 236789999999999
Q ss_pred HHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcC-CccEEEEecccccCCCCCCCC--------EEEEccCCC
Q 009641 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVN--------NVVNYDKPA 414 (530)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiDip~~~--------~VI~~~~p~ 414 (530)
.++.++..|.+.+ ++..++++.... ++..+=. +.| .-.|.|||++++||.||.--. +||....|.
T Consensus 438 ~SE~ls~~L~~~g---i~h~vLNAk~~e--~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe 511 (925)
T PRK12903 438 DSETLHELLLEAN---IPHTVLNAKQNA--REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE 511 (925)
T ss_pred HHHHHHHHHHHCC---CCceeecccchh--hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCc
Confidence 9999999999876 666777776333 3322221 445 357899999999999997322 899999999
Q ss_pred ChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 415 s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
|..---|-.||+||.|.+|.+-.|++-+|
T Consensus 512 SrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 512 SRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred hHHHHHHHhcccccCCCCCcceEEEecch
Confidence 99999999999999999999999999876
No 123
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.3e-19 Score=180.62 Aligned_cols=371 Identities=19% Similarity=0.156 Sum_probs=222.6
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
..+.+||++.++.+.+....+...|+-..+|.|||...+ ..+..+.....-...+|||||. .++.||.+++..+.++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~- 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPP- 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcc-
Confidence 468899999999887766667789999999999997533 3344443331122479999997 7889999999999775
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
++|.+++|..+...... ..+.-.....+.+.......|+|+|++.+.-.- ..+.-..++++|+||.|+
T Consensus 281 -~rv~ilh~t~s~~r~~~--------~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~---d~l~~~~W~y~ILDEGH~ 348 (923)
T KOG0387|consen 281 -FRVFILHGTGSGARYDA--------SHSSHKKDKLLIRKVATDGGILITTYDGFRIQG---DDLLGILWDYVILDEGHR 348 (923)
T ss_pred -eEEEEEecCCccccccc--------chhhhhhhhhheeeecccCcEEEEehhhhcccC---cccccccccEEEecCccc
Confidence 67777777655211000 000000000011122234589999988774321 123334589999999999
Q ss_pred hhhHhh----------------------hhHHHHHHhhcccCcccccccccccccccc-----cchh-------------
Q 009641 209 LLREAY----------------------QAWLPTVLQLTRSDNENRFSDASTFLPSAF-----GSLK------------- 248 (530)
Q Consensus 209 ~~~~~~----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------- 248 (530)
+-+.+- .+.+.++.+......++..+....+...+. +...
T Consensus 349 IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 349 IRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKC 428 (923)
T ss_pred ccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHH
Confidence 855432 122222222222222222221111110000 0000
Q ss_pred -----------hhhccccccCCC-CCCCCceeeEEEeEeecCChhhhhhhc--------------------------cCC
Q 009641 249 -----------TIRRCGVERGFK-DKPYPRLVKMVLSATLTQDPNKLAQLD--------------------------LHH 290 (530)
Q Consensus 249 -----------~~~~~~~~~~~~-~~~~~~~~~i~~SaT~~~~~~~~~~~~--------------------------~~~ 290 (530)
.+++.. ..... ..+...-++++++-|... ..+...+ +.+
T Consensus 429 a~~Lr~lI~PylLRR~K-~dv~~~~Lp~K~E~VlfC~LT~~Q--R~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnH 505 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMK-SDVKGLKLPKKEEIVLFCRLTKLQ--RRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNH 505 (923)
T ss_pred HHHHHHHhHHHHHHHHH-HHhhhccCCCccceEEEEeccHHH--HHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCC
Confidence 000000 01111 333333345555555432 1222211 122
Q ss_pred ceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEcccc
Q 009641 291 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368 (530)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~ 368 (530)
|......... .. ....+........|...+..++..+ .+.++|+|..++.+...+...|... .++....+.|.
T Consensus 506 Pdll~~~~~~--~~-~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~--~~ysylRmDGt 580 (923)
T KOG0387|consen 506 PDLLDRRDED--EK-QGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRA--KGYSYLRMDGT 580 (923)
T ss_pred cccccCcccc--cc-cCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhc--CCceEEEecCC
Confidence 2222211100 00 0001112233456777777777643 5679999999999999999999842 23889999999
Q ss_pred CCHHHHHHHHHHHhcCCc--cEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEE--Eeecc
Q 009641 369 QRQSVRSKTLKAFREGKI--QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKD 442 (530)
Q Consensus 369 ~~~~~R~~~~~~f~~g~~--~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~--~~~~~ 442 (530)
.+...|..++++|.++.. -.|++|.+.+-|+|+.+++-||+|||-|+|..-.|..-|+.|.|++-.+++ +++..
T Consensus 581 T~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 581 TPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred CccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 999999999999998763 357999999999999999999999999999999999999999999855444 45544
No 124
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=4.6e-19 Score=167.88 Aligned_cols=314 Identities=20% Similarity=0.197 Sum_probs=202.7
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
..++|||.+.+...+... +.++.+|..|+|+|||++-+- +...+. .++||||.+-..+.||...+..++.-.
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvT-Aa~tik------K~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVT-AACTIK------KSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeee-eeeeec------ccEEEEecCccCHHHHHHHHHhhcccC
Confidence 369999999988876533 236789999999999997533 333332 369999999999999999999886655
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCC-------CCCCCCccEE
Q 009641 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-------GFTLEHLCYL 201 (530)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-------~~~~~~~~~l 201 (530)
+-.+..++.+... ....++.|+|+|+.++..--.+.. .+.-..++++
T Consensus 373 d~~i~rFTsd~Ke--------------------------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGll 426 (776)
T KOG1123|consen 373 DDQICRFTSDAKE--------------------------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLL 426 (776)
T ss_pred ccceEEeeccccc--------------------------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeE
Confidence 5556666655431 234667999999876633211110 0123468999
Q ss_pred EEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChh
Q 009641 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (530)
Q Consensus 202 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 281 (530)
++||+|.+...-|...+.-+-.+. .+.++||+..+-.
T Consensus 427 llDEVHvvPA~MFRRVlsiv~aHc-------------------------------------------KLGLTATLvREDd 463 (776)
T KOG1123|consen 427 LLDEVHVVPAKMFRRVLSIVQAHC-------------------------------------------KLGLTATLVREDD 463 (776)
T ss_pred EeehhccchHHHHHHHHHHHHHHh-------------------------------------------hccceeEEeeccc
Confidence 999999887666655544443332 3667788766544
Q ss_pred hhhhh-ccCCceEEecCCccc-------------------------cCc-ccceeeEeeccCCCcHHHHHHHHH--hcCC
Q 009641 282 KLAQL-DLHHPLFLTTGETRY-------------------------KLP-ERLESYKLICESKLKPLYLVALLQ--SLGE 332 (530)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~~~~-------------------------~~~-~~~~~~~~~~~~~~k~~~l~~~l~--~~~~ 332 (530)
.+..+ ++-.|...+..--.. .+. ..-.......-...|+..---+++ ...+
T Consensus 464 KI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~Rg 543 (776)
T KOG1123|consen 464 KITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRG 543 (776)
T ss_pred cccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcC
Confidence 44332 122222221110000 000 000111111222333333222222 2367
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcC-CccEEEEecccccCCCCCCCCEEEEcc
Q 009641 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (530)
Q Consensus 333 ~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiDip~~~~VI~~~ 411 (530)
.++|||..++-.....+-.|.+ -.+.|..++.+|-++++.|+-+ .++.+.-+.+....+|+|.++++|+..
T Consensus 544 DKiIVFsDnvfALk~YAikl~K--------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 544 DKIIVFSDNVFALKEYAIKLGK--------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred CeEEEEeccHHHHHHHHHHcCC--------ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEc
Confidence 8999999987776666665543 2567999999999999999954 678888899999999999999999976
Q ss_pred CC-CChhHHHHHHhhhhcCCCC------ccEEEEeecchHHHH
Q 009641 412 KP-AYIKTYIHRAGRTARAGQL------GRCFTLLHKDEVKRF 447 (530)
Q Consensus 412 ~p-~s~~~y~Qr~GR~gR~g~~------g~~i~~~~~~~~~~~ 447 (530)
.. .|..+-.||.||..|+-+. ...+.+++.+-.+++
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 54 4677889999999996322 445667777755444
No 125
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.83 E-value=4.6e-18 Score=173.90 Aligned_cols=84 Identities=19% Similarity=0.248 Sum_probs=67.7
Q ss_pred hHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc-ccc--Cce
Q 009641 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PAV--GLS 131 (530)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~-~~~--~~~ 131 (530)
|.+.+..+...+..++.+++.||||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. +.+ +++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~ 79 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQ 79 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCee
Confidence 6677777776666788999999999999999999999877642 24589999999999999999988887 333 566
Q ss_pred EEEeecCCc
Q 009641 132 VGLAVGQSS 140 (530)
Q Consensus 132 v~~~~g~~~ 140 (530)
+.++.|..+
T Consensus 80 ~~~lkGr~n 88 (636)
T TIGR03117 80 AGFFPGSQE 88 (636)
T ss_pred EEEEECCcc
Confidence 777777654
No 126
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2.2e-19 Score=175.40 Aligned_cols=298 Identities=21% Similarity=0.275 Sum_probs=195.0
Q ss_pred CCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC--CcccEEEEcCcHHHHHHHHHHHH-HhccccCceEEEeecCCchHH
Q 009641 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQSSIAD 143 (530)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~--~~~~~lil~Pt~~L~~Q~~~~l~-~~~~~~~~~v~~~~g~~~~~~ 143 (530)
...+-++|.|.||||||.. +| +.|...+. .+.++=+-=|.|.-|--++.... ++ |.+.+.-+|-.-..+
T Consensus 278 ~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EM----gvkLG~eVGYsIRFE 349 (902)
T KOG0923|consen 278 KEHQVLIIVGETGSGKTTQ--IP--QYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEM----GVKLGHEVGYSIRFE 349 (902)
T ss_pred HhCcEEEEEcCCCCCcccc--cc--HHHHhcccccCCceEeecCcchHHHHHHHHHHHHHh----CcccccccceEEEec
Confidence 3467789999999999975 33 23333221 23334444498888777665443 33 344333333221111
Q ss_pred HHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHh
Q 009641 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223 (530)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~ 223 (530)
.. .....-|=++|-++|+.-+.. ..++.+++++||||||.- .-.-+.+-.++.
T Consensus 350 dc-----------------------TSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHER--TL~TDILfgLvK 402 (902)
T KOG0923|consen 350 DC-----------------------TSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHER--TLHTDILFGLVK 402 (902)
T ss_pred cc-----------------------cCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhh--hhhhhHHHHHHH
Confidence 10 012236779999999876654 467889999999999962 001122222222
Q ss_pred hcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccC
Q 009641 224 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 303 (530)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (530)
.+.. ..|.++.++.|||+ +.+.+...+-.-|++...+.. +
T Consensus 403 DIar-----------------------------------~RpdLKllIsSAT~--DAekFS~fFDdapIF~iPGRR-y-- 442 (902)
T KOG0923|consen 403 DIAR-----------------------------------FRPDLKLLISSATM--DAEKFSAFFDDAPIFRIPGRR-Y-- 442 (902)
T ss_pred HHHh-----------------------------------hCCcceEEeecccc--CHHHHHHhccCCcEEeccCcc-c--
Confidence 2221 12556889999998 666666666666666554432 2
Q ss_pred cccceeeEeeccC-CCcHHHHHHHHH---hcCCCcEEEEcCChHHHHHHHHHHHhc----C--CCcceEEEccccCCHHH
Q 009641 304 PERLESYKLICES-KLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHF----G--ELRIKIKEYSGLQRQSV 373 (530)
Q Consensus 304 ~~~~~~~~~~~~~-~~k~~~l~~~l~---~~~~~~~iVf~~s~~~~~~l~~~L~~~----~--~~~~~v~~~h~~~~~~~ 373 (530)
.+..++...+. +.-...+..+++ ..+.+-+|||....+..+...+.|.+. | ...+-+..+|+.+|...
T Consensus 443 --PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPsel 520 (902)
T KOG0923|consen 443 --PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSEL 520 (902)
T ss_pred --ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHH
Confidence 22233333322 222233333333 335688999999999888887777543 2 12356778999999999
Q ss_pred HHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC------------------CCChhHHHHHHhhhhcCCCCccE
Q 009641 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRC 435 (530)
Q Consensus 374 R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~------------------p~s~~~y~Qr~GR~gR~g~~g~~ 435 (530)
...+++.--.|-.+|++||++++..+.|+++..||+-+. |.|-.+-.||.|||||.| +|+|
T Consensus 521 QakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKC 599 (902)
T KOG0923|consen 521 QAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKC 599 (902)
T ss_pred HHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCce
Confidence 999998888999999999999999999999999998553 345667789999999996 9999
Q ss_pred EEEeecc
Q 009641 436 FTLLHKD 442 (530)
Q Consensus 436 i~~~~~~ 442 (530)
+-+++..
T Consensus 600 fRLYt~~ 606 (902)
T KOG0923|consen 600 FRLYTAW 606 (902)
T ss_pred EEeechh
Confidence 9999964
No 127
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=2.1e-18 Score=177.67 Aligned_cols=131 Identities=27% Similarity=0.302 Sum_probs=102.4
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|.-. .+...+.-|+.+.||.|||+++.+|++-+... |..|.|++++..||..-++++..+.
T Consensus 82 lG~-r~ydVQliG------gl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~----GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIG------GMVLHEGQIAEMKTGEGKTLVATLPSYLNALT----GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHh------hhhhcCCceeeecCCCChhHHHHHHHHHHhhc----CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 676 899999643 33345667999999999999999998766554 3479999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-----HHHHhc-CCCCCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHINA-TRGFTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-----~~~l~~-~~~~~~~~~~ 199 (530)
.++|++|+++.++.+..+... ...+||+++|+..| .+.+.. ......+.+.
T Consensus 151 ~~LGLtvg~i~~~~~~~err~-----------------------aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~ 207 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKK-----------------------NYACDITYATNSELGFDYLRDNMATDISEVVQRPFN 207 (939)
T ss_pred HHhCCeEEEECCCCChHHHHH-----------------------hcCCCeEEecCCcccccchhhhhcccccccccCccc
Confidence 999999999988776554432 35679999999877 444332 1223456789
Q ss_pred EEEEechhHhh
Q 009641 200 YLVVDETDRLL 210 (530)
Q Consensus 200 ~lViDEah~~~ 210 (530)
+.||||+|.++
T Consensus 208 faIVDEvDSIL 218 (939)
T PRK12902 208 YCVIDEVDSIL 218 (939)
T ss_pred eEEEeccccee
Confidence 99999999863
No 128
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.82 E-value=7.6e-19 Score=182.76 Aligned_cols=309 Identities=19% Similarity=0.226 Sum_probs=204.5
Q ss_pred CCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHH-HhccccCceEEEeecCCchHHH
Q 009641 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQSSIADE 144 (530)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~-~~~~~~~~~v~~~~g~~~~~~~ 144 (530)
+...+.++|.+.||+|||...--.+++.....+ ...++++-=|+|--|.-+++++. +.+...|-.|+.-.+..+..
T Consensus 185 i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~-- 261 (924)
T KOG0920|consen 185 IEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKR-- 261 (924)
T ss_pred HHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeeccc--
Confidence 345788999999999999887677888776655 44455555599888888877654 34454555555444332211
Q ss_pred HHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhh
Q 009641 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (530)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 224 (530)
.....+++||.+.|++.+.. ...+..+..||+||+|.-.-. .+.+--++..
T Consensus 262 -------------------------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~--~DflLi~lk~ 312 (924)
T KOG0920|consen 262 -------------------------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSIN--TDFLLILLKD 312 (924)
T ss_pred -------------------------CCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCC--cccHHHHHHH
Confidence 12258999999999999886 345778999999999963111 1112222221
Q ss_pred cccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCcccc--
Q 009641 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-- 302 (530)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 302 (530)
+-. ..|.++.|+||||.. .+.+...+...|++...+.....
T Consensus 313 lL~-----------------------------------~~p~LkvILMSAT~d--ae~fs~YF~~~pvi~i~grtfpV~~ 355 (924)
T KOG0920|consen 313 LLP-----------------------------------RNPDLKVILMSATLD--AELFSDYFGGCPVITIPGRTFPVKE 355 (924)
T ss_pred Hhh-----------------------------------hCCCceEEEeeeecc--hHHHHHHhCCCceEeecCCCcchHH
Confidence 111 015568999999995 44444444444444332211000
Q ss_pred ------------CcccceeeE------------eeccCCCcHHHHHHHHH----hcCCCcEEEEcCChHHHHHHHHHHHh
Q 009641 303 ------------LPERLESYK------------LICESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNH 354 (530)
Q Consensus 303 ------------~~~~~~~~~------------~~~~~~~k~~~l~~~l~----~~~~~~~iVf~~s~~~~~~l~~~L~~ 354 (530)
......++. .....+.....+..+++ ....+.+|||.+....+..+.+.|..
T Consensus 356 ~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~ 435 (924)
T KOG0920|consen 356 YFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEV 435 (924)
T ss_pred HHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhh
Confidence 000000000 00011123334444443 23467999999999999999999975
Q ss_pred cC----CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEcc--------CCCC-------
Q 009641 355 FG----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--------KPAY------- 415 (530)
Q Consensus 355 ~~----~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~--------~p~s------- 415 (530)
.. ..++-+..+|+.|+..+...+...--.|..+|+++|++++.+|.|++|-.||+.+ +-.+
T Consensus 436 ~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~ 515 (924)
T KOG0920|consen 436 NLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLS 515 (924)
T ss_pred ccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhhee
Confidence 32 1346778899999999999999999999999999999999999999999999844 3332
Q ss_pred ---hhHHHHHHhhhhcCCCCccEEEEeecchH
Q 009641 416 ---IKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (530)
Q Consensus 416 ---~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~ 444 (530)
...-.||.|||||. ++|.|+-+++....
T Consensus 516 wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 516 WVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred eccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 33456999999998 79999999988654
No 129
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=9.9e-18 Score=182.90 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=104.8
Q ss_pred CCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH----HHH
Q 009641 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD----VFA 122 (530)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~----~l~ 122 (530)
|| ++||-|.+.+..+...+..++.+++.||||+|||++|++|++..... .+.+++|.++|+.|.+|+.. .++
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~---~~~~vvIsT~T~~LQ~Ql~~kDiP~L~ 330 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK---KEEPVVISTYTIQLQQQLLEKDIPLLQ 330 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc---cCCeEEEEcCCHHHHHHHHHhhHHHHH
Confidence 66 99999999888877777778889999999999999999999866543 34589999999999999876 344
Q ss_pred HhccccCceEEEeecCCch---HH------------HHHHH-------hh---cCcc------------------ccCcc
Q 009641 123 AIAPAVGLSVGLAVGQSSI---AD------------EISEL-------IK---RPKL------------------EAGIC 159 (530)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~---~~------------~~~~~-------~~---~~~~------------------~~~~~ 159 (530)
+.++. ++++.++.|..+. .. +...+ .. ..+. ....|
T Consensus 331 ~~~~~-~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~c 409 (928)
T PRK08074 331 KIFPF-PVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGESD 409 (928)
T ss_pred HHcCC-CceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCccc
Confidence 44332 4667766665431 00 00000 00 0000 00001
Q ss_pred CC---------chhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhh
Q 009641 160 YD---------PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (530)
Q Consensus 160 ~~---------~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~ 211 (530)
.+ .-...+.-...++|+|++...|+..+.... -.+...+++||||||++.+
T Consensus 410 ~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~-~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 410 GGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEE-PLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhc-ccCCCCCeEEEECCchHHH
Confidence 11 111122334568999999999988774422 2345689999999999753
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=181.84 Aligned_cols=342 Identities=18% Similarity=0.227 Sum_probs=199.2
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
..-.+|+|+|+.|++...+.+..+...=+.+.+|+|||++.+- +.+.+.. .++|+|+|+.+|..|..+.+..-
T Consensus 157 ~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~-----~~iL~LvPSIsLLsQTlrew~~~- 229 (1518)
T COG4889 157 KKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA-----ARILFLVPSISLLSQTLREWTAQ- 229 (1518)
T ss_pred CCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh-----hheEeecchHHHHHHHHHHHhhc-
Confidence 3446999999999999988877665566677899999998755 5555543 47999999999999988776654
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-----cCCCcEEEeCChHHHHHHhcCCCCCCCCccE
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-----QSAVDILVATPGRLMDHINATRGFTLEHLCY 200 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~ 200 (530)
+.+.+....++++...... .+-.+-.+.......+...+.... ..+--|+++|++.+...-.. ...-+..+++
T Consensus 230 ~~l~~~a~aVcSD~kvsrs-~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~fDl 307 (1518)
T COG4889 230 KELDFRASAVCSDDKVSRS-AEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDEFDL 307 (1518)
T ss_pred cCccceeEEEecCcccccc-ccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCCccE
Confidence 2346777777776654443 112223334444455555443221 23467999999988665443 2344678999
Q ss_pred EEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCCh
Q 009641 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (530)
Q Consensus 201 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 280 (530)
||.||||+-..... .....+-|... . ........+.+.++||+.---
T Consensus 308 iicDEAHRTtGa~~-----------a~dd~saFt~v-----------------H-----s~~niKa~kRlYmTATPkiy~ 354 (1518)
T COG4889 308 IICDEAHRTTGATL-----------AGDDKSAFTRV-----------------H-----SDQNIKAAKRLYMTATPKIYS 354 (1518)
T ss_pred EEecchhcccccee-----------cccCcccceee-----------------c-----CcchhHHHHhhhcccCchhhc
Confidence 99999998522100 00000000000 0 000001112344455543110
Q ss_pred hhh---------------------------------hhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHH---H
Q 009641 281 NKL---------------------------------AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL---V 324 (530)
Q Consensus 281 ~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l---~ 324 (530)
+.. ....+.+..+....-....+...++.........-..... .
T Consensus 355 eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIv 434 (1518)
T COG4889 355 ESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIV 434 (1518)
T ss_pred hhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhh
Confidence 000 0001111111110000001111111111000111111111 1
Q ss_pred H----HHHhc--------------CCCcEEEEcCChHHHHHHHHHHHh------------cCCCcceEEEccccCCHHHH
Q 009641 325 A----LLQSL--------------GEEKCIVFTSSVESTHRLCTLLNH------------FGELRIKIKEYSGLQRQSVR 374 (530)
Q Consensus 325 ~----~l~~~--------------~~~~~iVf~~s~~~~~~l~~~L~~------------~~~~~~~v~~~h~~~~~~~R 374 (530)
. +-++. +-.+.|-||.++++...+++.+.. ...+.+.+....|.|...+|
T Consensus 435 G~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R 514 (1518)
T COG4889 435 GCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALER 514 (1518)
T ss_pred hhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHH
Confidence 1 11111 114788999999998888877643 12344556667789999999
Q ss_pred HHHHH---HHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcC
Q 009641 375 SKTLK---AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (530)
Q Consensus 375 ~~~~~---~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~ 429 (530)
...++ .|...+++||--...+++|||+|.++.||++++-.+..+.+|.+||+.|.
T Consensus 515 ~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 515 LDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred HHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 66654 34577899998889999999999999999999999999999999999994
No 131
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.80 E-value=3.3e-18 Score=170.56 Aligned_cols=373 Identities=21% Similarity=0.221 Sum_probs=224.6
Q ss_pred CCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
|+ ++.+||.-.+.++.-....+-+.|+...+|.|||.. ++..+..|...+..| .-|||||...|-+ |.+++.++|+
T Consensus 397 ~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~g-pHLVVvPsSTleN-WlrEf~kwCP 472 (941)
T KOG0389|consen 397 GI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPG-PHLVVVPSSTLEN-WLREFAKWCP 472 (941)
T ss_pred CC-cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCC-CcEEEecchhHHH-HHHHHHHhCC
Confidence 65 699999988876543333456789999999999975 344566666655555 4699999977654 8888888888
Q ss_pred ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEech
Q 009641 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (530)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 206 (530)
. ++|..++|......+.+...+.. ...++|+++|+......-.....+.-.+++++|+||+
T Consensus 473 s--l~Ve~YyGSq~ER~~lR~~i~~~-----------------~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEg 533 (941)
T KOG0389|consen 473 S--LKVEPYYGSQDERRELRERIKKN-----------------KDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEG 533 (941)
T ss_pred c--eEEEeccCcHHHHHHHHHHHhcc-----------------CCCccEEEEEeecccCChHHHHHHHhccccEEEecch
Confidence 5 79999999886666555433221 1357999999876532111111223456999999999
Q ss_pred hHhhhHhhh----------------------hHHHHHHhhcccCcccccccccccccccccchhh-----------hhcc
Q 009641 207 DRLLREAYQ----------------------AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT-----------IRRC 253 (530)
Q Consensus 207 h~~~~~~~~----------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 253 (530)
|.+-+.... ..+.++++++...-+..|......+...+..-.+ ..++
T Consensus 534 HmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerI 613 (941)
T KOG0389|consen 534 HMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERI 613 (941)
T ss_pred hhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHH
Confidence 987543321 2222223322222222222111111111111000 0000
Q ss_pred cc--------------ccCCCCCCCC--ceeeEEEeEeecCChhhhhhh-------------------------ccCCce
Q 009641 254 GV--------------ERGFKDKPYP--RLVKMVLSATLTQDPNKLAQL-------------------------DLHHPL 292 (530)
Q Consensus 254 ~~--------------~~~~~~~~~~--~~~~i~~SaT~~~~~~~~~~~-------------------------~~~~~~ 292 (530)
.. ..-.+..|.. .+..+.||.....--..++.. ...+|.
T Consensus 614 srAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPL 693 (941)
T KOG0389|consen 614 SRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPL 693 (941)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChh
Confidence 00 0011111111 122233333221110001100 111221
Q ss_pred EEecCCc---------------------------------cccCcccceeeE------eec---cCCCcHHHHHHHHHhc
Q 009641 293 FLTTGET---------------------------------RYKLPERLESYK------LIC---ESKLKPLYLVALLQSL 330 (530)
Q Consensus 293 ~~~~~~~---------------------------------~~~~~~~~~~~~------~~~---~~~~k~~~l~~~l~~~ 330 (530)
.+..-.. .+.+.....+|. ... -...|...|..+|...
T Consensus 694 L~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~ 773 (941)
T KOG0389|consen 694 LFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKI 773 (941)
T ss_pred HHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHH
Confidence 1110000 000000001111 100 1345777788887643
Q ss_pred --CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCC--ccEEEEecccccCCCCCCCCE
Q 009641 331 --GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNN 406 (530)
Q Consensus 331 --~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~iLVaT~~~~~GiDip~~~~ 406 (530)
.+.++|||.......+-+-..|...+ +....+.|...-.+|..++..|...+ .-.|++|.+.+.|||+..+++
T Consensus 774 k~~G~RVLiFSQFTqmLDILE~~L~~l~---~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~ 850 (941)
T KOG0389|consen 774 KKKGDRVLIFSQFTQMLDILEVVLDTLG---YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANT 850 (941)
T ss_pred hhcCCEEEEeeHHHHHHHHHHHHHHhcC---ceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccce
Confidence 46899999999888888888888766 89999999999999999999999764 445899999999999999999
Q ss_pred EEEccCCCChhHHHHHHhhhhcCCCCc--cEEEEeecchHH
Q 009641 407 VVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEVK 445 (530)
Q Consensus 407 VI~~~~p~s~~~y~Qr~GR~gR~g~~g--~~i~~~~~~~~~ 445 (530)
||.+|...+|-.-.|.--|+.|.|+.. .++-+++++-++
T Consensus 851 VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 851 VIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred EEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 999999999999999999999999884 455578877544
No 132
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=2.6e-18 Score=168.32 Aligned_cols=308 Identities=21% Similarity=0.280 Sum_probs=191.2
Q ss_pred cchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEE-cCcHHHHHHHHHHHHHhccccC
Q 009641 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil-~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
...++.+.+..+- .++-++|.+.||||||.... +.|...+......|.+ -|.|.-|.-+++.+..- ++
T Consensus 357 vf~~R~~ll~~ir----~n~vvvivgETGSGKTTQl~----QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~E---M~ 425 (1042)
T KOG0924|consen 357 VFACRDQLLSVIR----ENQVVVIVGETGSGKTTQLA----QYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEE---MG 425 (1042)
T ss_pred hHHHHHHHHHHHh----hCcEEEEEecCCCCchhhhH----HHHHhcccccCCeeeecCchHHHHHHHHHHHHHH---hC
Confidence 3445555444332 35668899999999998633 3333322222223333 39998888877765542 23
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
...+..+|-.-..++. ......|=++|-+.|+.-... .-.+..++.||+||||.-
T Consensus 426 ~~lG~~VGYsIRFEdv-----------------------T~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHER 480 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDV-----------------------TSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHER 480 (1042)
T ss_pred CccccccceEEEeeec-----------------------CCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhc
Confidence 3333333322111110 113347889999998764432 234778999999999963
Q ss_pred hhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccC
Q 009641 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (530)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 289 (530)
.- ..+.+-.++...-... ..++.|+.|||+ +.+.+...+..
T Consensus 481 sl--NtDilfGllk~~larR-----------------------------------rdlKliVtSATm--~a~kf~nfFgn 521 (1042)
T KOG0924|consen 481 SL--NTDILFGLLKKVLARR-----------------------------------RDLKLIVTSATM--DAQKFSNFFGN 521 (1042)
T ss_pred cc--chHHHHHHHHHHHHhh-----------------------------------ccceEEEeeccc--cHHHHHHHhCC
Confidence 10 1122222222211100 234789999998 56666666654
Q ss_pred CceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH-------hcCCCcEEEEcCChHHHHHHHHHHHh----c---
Q 009641 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-------SLGEEKCIVFTSSVESTHRLCTLLNH----F--- 355 (530)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-------~~~~~~~iVf~~s~~~~~~l~~~L~~----~--- 355 (530)
-|.+...+.. ++ +...+ .......++...++ ....+-+|||.+..+..+..+..++. .
T Consensus 522 ~p~f~IpGRT-yP----V~~~~---~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~ 593 (1042)
T KOG0924|consen 522 CPQFTIPGRT-YP----VEIMY---TKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSA 593 (1042)
T ss_pred CceeeecCCc-cc----eEEEe---ccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcC
Confidence 4544333221 11 11111 12222333333333 22457899999988776665555443 2
Q ss_pred CCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC------------------CCChh
Q 009641 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIK 417 (530)
Q Consensus 356 ~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~------------------p~s~~ 417 (530)
+..+..+..+++.++..-..++++.-..|..+++|||++++..+.+|++.+||..+. |.|-.
T Consensus 594 ~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 594 PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 123578899999999999999988888999999999999999999999999998553 44556
Q ss_pred HHHHHHhhhhcCCCCccEEEEeecc
Q 009641 418 TYIHRAGRTARAGQLGRCFTLLHKD 442 (530)
Q Consensus 418 ~y~Qr~GR~gR~g~~g~~i~~~~~~ 442 (530)
.-.||.|||||.| +|.|+-+++.+
T Consensus 674 nA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 674 NADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cchhhccccCCCC-Ccceeeehhhh
Confidence 6779999999985 89999999874
No 133
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.80 E-value=1.4e-17 Score=170.47 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=78.5
Q ss_pred cceEEEccccCCHHHHHHHHHHHhcCC---ccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccE
Q 009641 359 RIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (530)
Q Consensus 359 ~~~v~~~h~~~~~~~R~~~~~~f~~g~---~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~ 435 (530)
++.+..+||.|+..+|..+++.|.+.. .-.|.+|-+.+.||++-+++-||.||+.+||..-.|.++|+.|.|++-.|
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v 698 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPV 698 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceE
Confidence 489999999999999999999999653 33567888999999999999999999999999999999999999999877
Q ss_pred EEE--eecc--hHHHHHHHHH
Q 009641 436 FTL--LHKD--EVKRFKKLLQ 452 (530)
Q Consensus 436 i~~--~~~~--~~~~~~~~~~ 452 (530)
++| ++.. |.+.+.+-..
T Consensus 699 ~iYrLlatGtiEEk~~qrq~~ 719 (776)
T KOG0390|consen 699 YIYRLLATGTIEEKIYQRQTH 719 (776)
T ss_pred EEEEeecCCCchHHHHHHHHH
Confidence 775 4433 3344444333
No 134
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.4e-18 Score=172.89 Aligned_cols=332 Identities=16% Similarity=0.196 Sum_probs=194.1
Q ss_pred CccchhhHHHHH--------HhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC-CCcccEEEEc-CcHHHHHHHH
Q 009641 49 SSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVL-PTRDLALQVK 118 (530)
Q Consensus 49 ~~~~~~Q~~a~~--------~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~-~~~~~~lil~-Pt~~L~~Q~~ 118 (530)
.++.++|..-++ .|++.+..+.-+||+|.||||||...--.+.++=.... ...+..|=|+ |.|.-|.-++
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamA 322 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMA 322 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHH
Confidence 456666653221 24555555666999999999999752111222111111 1112344444 8888777777
Q ss_pred HHHHHhccccCceEEE--eecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCC
Q 009641 119 DVFAAIAPAVGLSVGL--AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE 196 (530)
Q Consensus 119 ~~l~~~~~~~~~~v~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~ 196 (530)
+....-+..++-.|+. .+.++ ......|-++|-+.|+.-+.+ .|.+.
T Consensus 323 kRVa~EL~~~~~eVsYqIRfd~t-----------------------------i~e~T~IkFMTDGVLLrEi~~--DflL~ 371 (1172)
T KOG0926|consen 323 KRVAFELGVLGSEVSYQIRFDGT-----------------------------IGEDTSIKFMTDGVLLREIEN--DFLLT 371 (1172)
T ss_pred HHHHHHhccCccceeEEEEeccc-----------------------------cCCCceeEEecchHHHHHHHH--hHhhh
Confidence 6544322223333332 22222 123458999999999988875 47788
Q ss_pred CccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEee
Q 009641 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (530)
Q Consensus 197 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 276 (530)
.++.||+||||.- .-+.+.+-.+++.+-.... .+ +..+.....++.|+||||+
T Consensus 372 kYSvIIlDEAHER--SvnTDILiGmLSRiV~LR~---------------------k~----~ke~~~~kpLKLIIMSATL 424 (1172)
T KOG0926|consen 372 KYSVIILDEAHER--SVNTDILIGMLSRIVPLRQ---------------------KY----YKEQCQIKPLKLIIMSATL 424 (1172)
T ss_pred hceeEEechhhhc--cchHHHHHHHHHHHHHHHH---------------------HH----hhhhcccCceeEEEEeeeE
Confidence 9999999999962 1112222222222111000 00 0001122456889999998
Q ss_pred cCCh-hhhhhhccCCceEEecCCccccCcccceeeEeeccCC---CcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHH
Q 009641 277 TQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (530)
Q Consensus 277 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L 352 (530)
.-.- ..-..++...|-.+.+....++. .+ |+......+ +.+...+.+-+..+.+.+|||+....++..+++.|
T Consensus 425 RVsDFtenk~LFpi~pPlikVdARQfPV--sI-HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kL 501 (1172)
T KOG0926|consen 425 RVSDFTENKRLFPIPPPLIKVDARQFPV--SI-HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKL 501 (1172)
T ss_pred EecccccCceecCCCCceeeeecccCce--EE-EeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHH
Confidence 5221 11122222233344444333322 11 111111111 12233444455678999999999999999999999
Q ss_pred HhcCCC--------------------------------------------------------------------------
Q 009641 353 NHFGEL-------------------------------------------------------------------------- 358 (530)
Q Consensus 353 ~~~~~~-------------------------------------------------------------------------- 358 (530)
.+....
T Consensus 502 RK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge 581 (1172)
T KOG0926|consen 502 RKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGE 581 (1172)
T ss_pred HhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCC
Confidence 764210
Q ss_pred ----------------------cceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC----
Q 009641 359 ----------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---- 412 (530)
Q Consensus 359 ----------------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~---- 412 (530)
...|..+++-++.+.+.++++.--.|..-.+|||++++..+.||++..||+.+.
T Consensus 582 ~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R 661 (1172)
T KOG0926|consen 582 PEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKER 661 (1172)
T ss_pred cccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhh
Confidence 113445566666777777777777787778999999999999999999998543
Q ss_pred ----CCChh----------HHHHHHhhhhcCCCCccEEEEeecc
Q 009641 413 ----PAYIK----------TYIHRAGRTARAGQLGRCFTLLHKD 442 (530)
Q Consensus 413 ----p~s~~----------~y~Qr~GR~gR~g~~g~~i~~~~~~ 442 (530)
-..+. +--||.|||||.| +|.|+-+|+..
T Consensus 662 ~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 662 LYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred ccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 22233 3349999999996 89999988753
No 135
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.79 E-value=1.1e-17 Score=151.57 Aligned_cols=188 Identities=34% Similarity=0.539 Sum_probs=138.6
Q ss_pred HCCCCccchhhHHHHHHhcCCCCCC-CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 45 NMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
.+++.+|+++|.+++..+.. . +++++.+|||+|||.++..+++..+.... ..+++|++|++.++.|+.+.+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHHHHHHH
Confidence 45778999999999888765 4 89999999999999999888888776642 34799999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCC-cEEEeCChHHHHHHhcCCCCCCCCccEEE
Q 009641 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILVATPGRLMDHINATRGFTLEHLCYLV 202 (530)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Ili~Tp~~l~~~l~~~~~~~~~~~~~lV 202 (530)
++...........++....... .....+. +++++|++.+.+.+... ......++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~v~~~t~~~l~~~~~~~-~~~~~~~~~iI 134 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQL---------------------RKLESGKTDILVTTPGRLLDLLEND-LLELSNVDLVI 134 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHH---------------------HHHhcCCCCEEEeChHHHHHHHHcC-CcCHhHCCEEE
Confidence 8765442333333333322221 2223333 99999999999988873 35567799999
Q ss_pred EechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhh
Q 009641 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (530)
Q Consensus 203 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 282 (530)
+||||++....+...+..++..+. +..+.+++|||++.....
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLP--------------------------------------KNVQLLLLSATPPEEIEN 176 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCC--------------------------------------ccceEEEEecCCchhHHH
Confidence 999999876455566666665441 122689999999988888
Q ss_pred hhhhccCCceEEecCC
Q 009641 283 LAQLDLHHPLFLTTGE 298 (530)
Q Consensus 283 ~~~~~~~~~~~~~~~~ 298 (530)
...........+....
T Consensus 177 ~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 177 LLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHHhcCCCEEEeCCc
Confidence 7777776666555443
No 136
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.78 E-value=4.1e-18 Score=163.71 Aligned_cols=278 Identities=21% Similarity=0.264 Sum_probs=184.6
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (530)
.+-++-.+||.||||.- +++++...+ ..+|--|.|-||.++++.+.+. |+.+.+++|.......-+
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak----sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK----SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc----cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--
Confidence 34567799999999975 777777643 6899999999999999998886 788888888654221100
Q ss_pred hhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhh-hHHHHHHhhccc
Q 009641 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-AWLPTVLQLTRS 227 (530)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~-~~~~~i~~~~~~ 227 (530)
...+..+-+|-++.- . -..+++.||||++.|.+..++ .|.+.+++..+.
T Consensus 257 ---------------------~~~a~hvScTVEM~s--------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad 306 (700)
T KOG0953|consen 257 ---------------------GNPAQHVSCTVEMVS--------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD 306 (700)
T ss_pred ---------------------CCcccceEEEEEEee--------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh
Confidence 012466777755431 1 124889999999999776655 566666665432
Q ss_pred CcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhcc---CCceEEecCCccccCc
Q 009641 228 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL---HHPLFLTTGETRYKLP 304 (530)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 304 (530)
. + +.. + .+.+-.+.+..+ .+.+.+.
T Consensus 307 E---------------------i-----------------HLC---G--epsvldlV~~i~k~TGd~vev~--------- 334 (700)
T KOG0953|consen 307 E---------------------I-----------------HLC---G--EPSVLDLVRKILKMTGDDVEVR--------- 334 (700)
T ss_pred h---------------------h-----------------hcc---C--CchHHHHHHHHHhhcCCeeEEE---------
Confidence 1 0 000 0 011112222111 1111111
Q ss_pred ccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhc-
Q 009641 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE- 383 (530)
Q Consensus 305 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~- 383 (530)
.|... .+-...+.+..-+.....+-||| |-|++....+...+.+.+. .++++++|++|++.|.+....|.+
T Consensus 335 ----~YeRl-~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~--~k~aVIYGsLPPeTr~aQA~~FNd~ 406 (700)
T KOG0953|consen 335 ----EYERL-SPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGN--HKCAVIYGSLPPETRLAQAALFNDP 406 (700)
T ss_pred ----eeccc-CcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcC--cceEEEecCCCCchhHHHHHHhCCC
Confidence 11111 11111123344455556666666 4467788889999988663 468899999999999999999997
Q ss_pred -CCccEEEEecccccCCCCCCCCEEEEccCC---------CChhHHHHHHhhhhcCCCC---ccEEEEeecchHHHHHHH
Q 009641 384 -GKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVKRFKKL 450 (530)
Q Consensus 384 -g~~~iLVaT~~~~~GiDip~~~~VI~~~~p---------~s~~~y~Qr~GR~gR~g~~---g~~i~~~~~~~~~~~~~~ 450 (530)
++++||||||++++|+|+ +++-||++++- -+..+-.|..|||||.|.. |.+.++-.+ |...+.++
T Consensus 407 ~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e-DL~~L~~~ 484 (700)
T KOG0953|consen 407 SNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE-DLKLLKRI 484 (700)
T ss_pred CCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh-hHHHHHHH
Confidence 899999999999999999 58889998764 3466788999999998755 666665544 55666666
Q ss_pred HH
Q 009641 451 LQ 452 (530)
Q Consensus 451 ~~ 452 (530)
++
T Consensus 485 l~ 486 (700)
T KOG0953|consen 485 LK 486 (700)
T ss_pred Hh
Confidence 55
No 137
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=2.2e-18 Score=144.81 Aligned_cols=118 Identities=39% Similarity=0.580 Sum_probs=108.3
Q ss_pred CcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEeccc
Q 009641 318 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (530)
Q Consensus 318 ~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~ 395 (530)
.|...+..++... .++++||||++...++.+++.|.... ..+..+||+++..+|..+++.|+++...+|++|+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG---IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 6777788877765 37899999999999999999998743 788999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEE
Q 009641 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (530)
Q Consensus 396 ~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~ 438 (530)
++|+|+|.+++||++++|++...|.|++||++|.|+.|.++++
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887764
No 138
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.78 E-value=1.5e-17 Score=172.50 Aligned_cols=351 Identities=17% Similarity=0.152 Sum_probs=209.7
Q ss_pred ccchhhHHHHHHhcCCCCC-CCcEEEECCCCchHHHHHHHHHHHHhhhcC-----CCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~-~~~~li~apTGsGKT~~~~~~~l~~l~~~~-----~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
.+|.||++.+.++ ..+.+ +=+.|++..+|.|||+..+..+.......+ -.....||+||. .|+..|..++.+
T Consensus 975 ~LRkYQqEGVnWL-aFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWL-AFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHH-HHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 5899999988763 22222 246899999999999986554443333321 123348999997 899999999999
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEE
Q 009641 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
++++ +++..++|........+ ..-++.+|+|++++.+.+-+.... -..+.|+|+
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR---------------------~q~~~~~iiVtSYDv~RnD~d~l~---~~~wNYcVL 1106 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELR---------------------DQYKNANIIVTSYDVVRNDVDYLI---KIDWNYCVL 1106 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHH---------------------hhccccceEEeeHHHHHHHHHHHH---hcccceEEe
Confidence 9988 67778888764333322 222456999999999986655422 225889999
Q ss_pred echhHhhhHhhhhHHHHHHhhcccCcc----------c---ccccccccccccccchhhhhccccccCCCCCCCCceeeE
Q 009641 204 DETDRLLREAYQAWLPTVLQLTRSDNE----------N---RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (530)
Q Consensus 204 DEah~~~~~~~~~~~~~i~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (530)
||-|-+-+.. ..+....+.+..... + ..+...-.+|.++|..+.+..... +.|
T Consensus 1107 DEGHVikN~k--tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~------------kpI 1172 (1549)
T KOG0392|consen 1107 DEGHVIKNSK--TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFG------------KPI 1172 (1549)
T ss_pred cCcceecchH--HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhc------------chh
Confidence 9999774331 112222222211100 0 000111123444444433322110 112
Q ss_pred EEeEeecCCh----------------------hhhhhhccC--CceEE-----ecCC---------------------cc
Q 009641 271 VLSATLTQDP----------------------NKLAQLDLH--HPLFL-----TTGE---------------------TR 300 (530)
Q Consensus 271 ~~SaT~~~~~----------------------~~~~~~~~~--~~~~~-----~~~~---------------------~~ 300 (530)
+.|-.+...- +++....+. .|.++ ..++ ..
T Consensus 1173 ~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~ 1252 (1549)
T KOG0392|consen 1173 LASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDG 1252 (1549)
T ss_pred hhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhcccccccccc
Confidence 2221111110 000000000 01000 0000 00
Q ss_pred ccCccc---------ce-------eeE-eec-----------------------cCCCcHHHHHHHHHhc----------
Q 009641 301 YKLPER---------LE-------SYK-LIC-----------------------ESKLKPLYLVALLQSL---------- 330 (530)
Q Consensus 301 ~~~~~~---------~~-------~~~-~~~-----------------------~~~~k~~~l~~~l~~~---------- 330 (530)
...... ++ +.. +.. ....|..+|..++...
T Consensus 1253 ~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~ 1332 (1549)
T KOG0392|consen 1253 GEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEV 1332 (1549)
T ss_pred chhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccc
Confidence 000000 00 000 000 1223455555555322
Q ss_pred ------CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcC-CccEE-EEecccccCCCCC
Q 009641 331 ------GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVL-VSSDAMTRGMDVE 402 (530)
Q Consensus 331 ------~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~iL-VaT~~~~~GiDip 402 (530)
.++++||||.-....+-+.+-|-+....++....+.|..++.+|.++.++|.++ .++|| ++|.+.+-|+|+.
T Consensus 1333 g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLT 1412 (1549)
T KOG0392|consen 1333 GTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLT 1412 (1549)
T ss_pred cCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccC
Confidence 246999999999999999887765433334455889999999999999999998 67775 7788999999999
Q ss_pred CCCEEEEccCCCChhHHHHHHhhhhcCCCCcc--EEEEeecc
Q 009641 403 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKD 442 (530)
Q Consensus 403 ~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~--~i~~~~~~ 442 (530)
++++||+++-.|++..-+|.+-||.|.|++.. ++-+++..
T Consensus 1413 GADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1413 GADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 99999999999999999999999999999854 44455554
No 139
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.77 E-value=4.4e-16 Score=164.84 Aligned_cols=88 Identities=24% Similarity=0.177 Sum_probs=65.3
Q ss_pred CCCccchhhHHHHHHhcCCCCC-----CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH-H
Q 009641 47 GISSLFPVQVAVWQETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD-V 120 (530)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~-----~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~-~ 120 (530)
|| ++|+-|.+.+..+...+.. ++.++|.||||+|||++|++|++..... .+.++||-+.|+.|-+|+.. .
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~---~~k~vVIST~T~~LQeQL~~kD 98 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA---EKKKLVISTATVALQEQLVSKD 98 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH---cCCeEEEEcCCHHHHHHHHhhh
Confidence 77 8999999988877766655 3668999999999999999999876554 34479999999999999864 3
Q ss_pred HHHhcccc--CceEEEeecC
Q 009641 121 FAAIAPAV--GLSVGLAVGQ 138 (530)
Q Consensus 121 l~~~~~~~--~~~v~~~~g~ 138 (530)
+-.+.+.+ .+++.++-|.
T Consensus 99 lP~l~~~l~~~~~~~llKGr 118 (697)
T PRK11747 99 LPLLLKISGLDFKFTLAKGR 118 (697)
T ss_pred hhHHHHHcCCCceEEEEcCc
Confidence 33332222 3555554443
No 140
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=3.4e-18 Score=129.06 Aligned_cols=77 Identities=36% Similarity=0.627 Sum_probs=73.0
Q ss_pred HHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCC
Q 009641 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (530)
Q Consensus 351 ~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g 430 (530)
.|+..+ +.+..+||+++..+|..+++.|++++..|||||+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 2 ~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKG---IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTT---SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCC---CcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455555 89999999999999999999999999999999999999999999999999999999999999999999986
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.75 E-value=3.4e-16 Score=148.52 Aligned_cols=327 Identities=16% Similarity=0.171 Sum_probs=202.7
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
+.+.|+|++.+...++ +|..+++...+|.|||+.++..+ ...... -..||+||. .+-..|++.+.++++..
T Consensus 197 s~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA--~yyraE---wplliVcPA-svrftWa~al~r~lps~ 267 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIA--RYYRAE---WPLLIVCPA-SVRFTWAKALNRFLPSI 267 (689)
T ss_pred HhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHH--HHHhhc---CcEEEEecH-HHhHHHHHHHHHhcccc
Confidence 4678999998766554 68889999999999999865433 222221 148999997 56667999999998765
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
.. +.++.++.+.- .++.....|.|.+++.+..+-.- +.-..+.+||+||+|+
T Consensus 268 ~p-i~vv~~~~D~~------------------------~~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~ 319 (689)
T KOG1000|consen 268 HP-IFVVDKSSDPL------------------------PDVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHM 319 (689)
T ss_pred cc-eEEEecccCCc------------------------cccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhh
Confidence 43 55555544321 12234458999999887544322 2233589999999998
Q ss_pred hhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeec-----------
Q 009641 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT----------- 277 (530)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~----------- 277 (530)
+-+. -..-...++..+.... +.|++|+|+.
T Consensus 320 Lk~s-ktkr~Ka~~dllk~ak--------------------------------------hvILLSGTPavSRP~elytqi 360 (689)
T KOG1000|consen 320 LKDS-KTKRTKAATDLLKVAK--------------------------------------HVILLSGTPAVSRPSELYTQI 360 (689)
T ss_pred hhcc-chhhhhhhhhHHHHhh--------------------------------------heEEecCCcccCCchhhhhhh
Confidence 7432 2222333332222110 2333333322
Q ss_pred ---------------------------------CChhhhhhhccCCceEEe-cC-CccccCcccceeeEeec--------
Q 009641 278 ---------------------------------QDPNKLAQLDLHHPLFLT-TG-ETRYKLPERLESYKLIC-------- 314 (530)
Q Consensus 278 ---------------------------------~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~-------- 314 (530)
.+..++.-.... .+.+. .. ..-..+|...+...+.+
T Consensus 361 ~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k-~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~ 439 (689)
T KOG1000|consen 361 RAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFK-RLMIRRLKADVLKQLPPKRREVVYVSGGRIDARM 439 (689)
T ss_pred hhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHH-HHHHHHHHHHHHhhCCccceEEEEEcCCccchHH
Confidence 121111100000 00000 00 00000111111111111
Q ss_pred -----------------------------cCCCcHHHHHHHHHh------cCCCcEEEEcCChHHHHHHHHHHHhcCCCc
Q 009641 315 -----------------------------ESKLKPLYLVALLQS------LGEEKCIVFTSSVESTHRLCTLLNHFGELR 359 (530)
Q Consensus 315 -----------------------------~~~~k~~~l~~~l~~------~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~ 359 (530)
....|...+.+.+-. .++.+.+|||......+.+...+.+.+
T Consensus 440 ~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~--- 516 (689)
T KOG1000|consen 440 DDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRK--- 516 (689)
T ss_pred HHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcC---
Confidence 011233333333322 356799999999999999999998776
Q ss_pred ceEEEccccCCHHHHHHHHHHHhcC-CccE-EEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEE
Q 009641 360 IKIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (530)
Q Consensus 360 ~~v~~~h~~~~~~~R~~~~~~f~~g-~~~i-LVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~ 437 (530)
++...+.|..+..+|....+.|+.+ +..| +++..+++.|+++...+.||+..+++++.-++|.--|+.|.|++..+.+
T Consensus 517 vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 517 VGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred CCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeE
Confidence 7788899999999999999999965 4444 5677889999999999999999999999999999999999999965444
Q ss_pred --Eeecc--hHHHHHHHHHHhc
Q 009641 438 --LLHKD--EVKRFKKLLQKAD 455 (530)
Q Consensus 438 --~~~~~--~~~~~~~~~~~~~ 455 (530)
|+.+. |...+..+.++++
T Consensus 597 ~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 597 QYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred EEEEecCchHHHHHHHHHHHHH
Confidence 44443 3445566655553
No 142
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=2.2e-17 Score=171.63 Aligned_cols=322 Identities=18% Similarity=0.261 Sum_probs=207.7
Q ss_pred cchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHH-HHhccccC
Q 009641 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF-AAIAPAVG 129 (530)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l-~~~~~~~~ 129 (530)
.+|+|.++++.+.+ .+.++++.+|+|||||+++.++++. +....++++++|.-+.+..++..+ +++....|
T Consensus 1144 ~n~iqtqVf~~~y~---~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYN---TNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred cCCceEEEEeeeec---ccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 48899987655443 5678999999999999998887765 335568999999999998776654 45656668
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
..+....|..+.+-.. ....+|+|+||+++-.+ + ....+++.|.||.|.+
T Consensus 1216 ~~~~~l~ge~s~~lkl------------------------~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDLKL------------------------LQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLI 1265 (1674)
T ss_pred ceEEecCCccccchHH------------------------hhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhh
Confidence 8999999988765442 23449999999998554 2 3567999999999987
Q ss_pred hhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccC
Q 009641 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (530)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 289 (530)
. ..++..++-|++ ++. +. ......++.+.+|..+. +...+ .+..
T Consensus 1266 g-g~~g~v~evi~S-~r~----------------------ia---------~q~~k~ir~v~ls~~la-na~d~--ig~s 1309 (1674)
T KOG0951|consen 1266 G-GVYGAVYEVICS-MRY----------------------IA---------SQLEKKIRVVALSSSLA-NARDL--IGAS 1309 (1674)
T ss_pred c-ccCCceEEEEee-HHH----------------------HH---------HHHHhheeEEEeehhhc-cchhh--cccc
Confidence 5 323332222222 110 00 00012335677766654 33333 2333
Q ss_pred CceEEecCCccccCcccce--eeEeeccCCCcHH---HHHHHHH--hcCCCcEEEEcCChHHHHHHHHHHHhcC------
Q 009641 290 HPLFLTTGETRYKLPERLE--SYKLICESKLKPL---YLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFG------ 356 (530)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~---~l~~~l~--~~~~~~~iVf~~s~~~~~~l~~~L~~~~------ 356 (530)
..-+++..+...+.|..++ .+........-.. ..+..+. ...+.+.+||++++++|..++..|-.+.
T Consensus 1310 ~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~ 1389 (1674)
T KOG0951|consen 1310 SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPD 1389 (1674)
T ss_pred ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHH
Confidence 3333444333333333322 2211111111111 1111122 2356799999999999998877653221
Q ss_pred ---------------CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEE-----ccC----
Q 009641 357 ---------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-----YDK---- 412 (530)
Q Consensus 357 ---------------~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~-----~~~---- 412 (530)
.+...+. |-+++..+...+-.-|..|.+.|+|...- ..|+-... +.||. ||.
T Consensus 1390 ~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~ 1465 (1674)
T KOG0951|consen 1390 YLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHS 1465 (1674)
T ss_pred HHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEecceeecccccc
Confidence 1122333 88999999999999999999999998877 78887753 44443 222
Q ss_pred --CCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHH
Q 009641 413 --PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (530)
Q Consensus 413 --p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~ 453 (530)
+-+.....|+.|+|.| .|.|++++...+...+++++..
T Consensus 1466 ~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e 1505 (1674)
T KOG0951|consen 1466 YEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYE 1505 (1674)
T ss_pred cccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccC
Confidence 2347789999999988 5799999999998888877544
No 143
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.9e-16 Score=165.07 Aligned_cols=124 Identities=18% Similarity=0.173 Sum_probs=96.5
Q ss_pred cCCCcHHHHHHHHH--hcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEe
Q 009641 315 ESKLKPLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (530)
Q Consensus 315 ~~~~k~~~l~~~l~--~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT 392 (530)
....|...+..-+. ...+.|+||-|.|++..+.+++.|...+ ++..++++.....+-..+-+.-+. -.|-|||
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g---I~H~VLNAK~h~~EAeIVA~AG~~--GaVTIAT 683 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK---IPHNVLNAKLHQKEAEIVAEAGQP--GTVTIAT 683 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC---CcHHHhhccchhhHHHHHHhcCCC--CcEEEec
Confidence 34456666665554 3368899999999999999999999876 555566766544444333333333 3688999
Q ss_pred cccccCCCCC--------CCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 393 DAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 393 ~~~~~GiDip--------~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
++++||-||. +=-+||....+.|..--.|-.||+||.|.+|.+-.|++-+|
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999999997 22389999999999999999999999999999999999876
No 144
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=1.8e-17 Score=159.38 Aligned_cols=342 Identities=13% Similarity=0.054 Sum_probs=213.1
Q ss_pred HHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHH
Q 009641 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (530)
Q Consensus 39 i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (530)
+.+.+.++.-+....+|.+++.. +-+|+++++.-.|.+||.+++.+.....+... .....+++.|+.+++....
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~----~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~--~~s~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKF----ASEGRADGGNEARQAGKGTCPTSGSRKFQTLC--HATNSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhh----hhhcccccccchhhcCCccCcccchhhhhhcC--cccceecchhHHHHhhccC
Confidence 34455567667899999998554 34689999999999999999988877665543 2336889999999987543
Q ss_pred HHHHHhcccc----CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCC-C-
Q 009641 119 DVFAAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-G- 192 (530)
Q Consensus 119 ~~l~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-~- 192 (530)
+.+.-..... +--|..+.|.+...+ ....+.+.+++++.|........... .
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~----------------------~A~~R~~~~~~~s~~~~~~s~~L~~~~~~ 406 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTK----------------------SALKRIGLNTLYSHQAEAISAALAKSLCY 406 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhH----------------------HHHHhcCcceeecCHHHHHHHHhhhcccc
Confidence 3221111000 111222223322222 23345678999999988866543311 1
Q ss_pred -CCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 009641 193 -FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (530)
Q Consensus 193 -~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (530)
..+-...++++||+|...- -++......+..+........ ....++++-
T Consensus 407 ~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~R~L~~L~~~F~-----------------------------~~~~~~~~~ 456 (1034)
T KOG4150|consen 407 NVPVFEELCKDTNSCALYLF-PTKALAQDQLRALSDLIKGFE-----------------------------ASINMGVYD 456 (1034)
T ss_pred ccHHHHHHHhcccceeeeec-chhhHHHHHHHHHHHHHHHHH-----------------------------hhcCcceEe
Confidence 2244567899999996532 233333333332221111000 002336777
Q ss_pred EeEeecCChhhhhhhcc-CCceEEecCCccccCcccceeeEeecc---------CCCcHHHHHHHHHh--cCCCcEEEEc
Q 009641 272 LSATLTQDPNKLAQLDL-HHPLFLTTGETRYKLPERLESYKLICE---------SKLKPLYLVALLQS--LGEEKCIVFT 339 (530)
Q Consensus 272 ~SaT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~~--~~~~~~iVf~ 339 (530)
.++|+...++......- .+...+..... |..-.++..-.+ .+.+......++.+ ..+-++|-||
T Consensus 457 ~~~~~K~~~~~~~~~~~~~E~~Li~~DGS----Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC 532 (1034)
T KOG4150|consen 457 GDTPYKDRTRLRSELANLSELELVTIDGS----PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFC 532 (1034)
T ss_pred CCCCcCCHHHHHHHhcCCcceEEEEecCC----CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEec
Confidence 78887766655444432 22222222211 111112211110 11222222222221 2366999999
Q ss_pred CChHHHHHHHHHHHhc----C-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC
Q 009641 340 SSVESTHRLCTLLNHF----G-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414 (530)
Q Consensus 340 ~s~~~~~~l~~~L~~~----~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~ 414 (530)
++++.|+.+.....+. + .+--.+..|.|+...++|.++..+.--|+..-+|+|++++-||||.+++.|++.+.|.
T Consensus 533 ~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~ 612 (1034)
T KOG4150|consen 533 PSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG 612 (1034)
T ss_pred cHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch
Confidence 9999999886654332 1 1112455788999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhhhcCCCCccEEEEeecc
Q 009641 415 YIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (530)
Q Consensus 415 s~~~y~Qr~GR~gR~g~~g~~i~~~~~~ 442 (530)
|...+.|..||+||.+++..++.++...
T Consensus 613 S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 613 SIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred hHHHHHHHhccccccCCCceEEEEEecc
Confidence 9999999999999998887666655443
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.73 E-value=1.9e-15 Score=161.41 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=65.7
Q ss_pred HHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
..+...++++.|.+.+..+...+..++.+++.||||+|||++|++|++...... +.+++|.++|+.|.+|+.+....
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~---~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE---GKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc---CCcEEEECCCHHHHHHHHHhhcc
Confidence 445555999999999988776666667799999999999999999999887663 35799999999999999887766
Q ss_pred h
Q 009641 124 I 124 (530)
Q Consensus 124 ~ 124 (530)
+
T Consensus 86 ~ 86 (654)
T COG1199 86 I 86 (654)
T ss_pred h
Confidence 4
No 146
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=2.4e-15 Score=160.63 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=69.7
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
|.|..++|.|++.+..+...+..+.++++.||||+|||++.+.|++.+....+ ...+++|.+.|..-..|..+++++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhhh
Confidence 68888899999999999988888999999999999999999999998876532 33589999999999999999999853
No 147
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=5.3e-15 Score=140.22 Aligned_cols=331 Identities=20% Similarity=0.259 Sum_probs=198.1
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC
Q 009641 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (530)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~ 100 (530)
.+.|...+ .++...+.|++.---..+.++.+ .++.+..++-+++.+.||||||...--.+++......
T Consensus 24 ~Npf~~~p------~s~rY~~ilk~R~~LPvw~~k~~----F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-- 91 (699)
T KOG0925|consen 24 INPFNGKP------YSQRYYDILKKRRELPVWEQKEE----FLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-- 91 (699)
T ss_pred cCCCCCCc------CcHHHHHHHHHHhcCchHHhHHH----HHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--
Confidence 44555554 78888888888542233333333 2333345788999999999999754333444433321
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
..+..--|.|.-|-+++....+- +++..+.-+|..-..+ -|.+++.+.+ ++|-
T Consensus 92 -~~v~CTQprrvaamsva~RVadE---MDv~lG~EVGysIrfE--------------dC~~~~T~Lk---------y~tD 144 (699)
T KOG0925|consen 92 -TGVACTQPRRVAAMSVAQRVADE---MDVTLGEEVGYSIRFE--------------DCTSPNTLLK---------YCTD 144 (699)
T ss_pred -cceeecCchHHHHHHHHHHHHHH---hccccchhcccccccc--------------ccCChhHHHH---------Hhcc
Confidence 23444458888877776654432 3555555555432222 1233333332 4666
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (530)
++|++-..+ .-.+..+++||+||||.-.= -.+.+..+++.....
T Consensus 145 gmLlrEams--~p~l~~y~viiLDeahERtl--ATDiLmGllk~v~~~-------------------------------- 188 (699)
T KOG0925|consen 145 GMLLREAMS--DPLLGRYGVIILDEAHERTL--ATDILMGLLKEVVRN-------------------------------- 188 (699)
T ss_pred hHHHHHHhh--CcccccccEEEechhhhhhH--HHHHHHHHHHHHHhh--------------------------------
Confidence 776654443 23477899999999996210 012222233221111
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHH----HHHHHhcCCCcEE
Q 009641 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL----VALLQSLGEEKCI 336 (530)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l----~~~l~~~~~~~~i 336 (530)
.|.++.|.+|||+ +..++...+..-|+.-..+. ..++.++......+-++.. ..+-.....+-++
T Consensus 189 ---rpdLk~vvmSatl--~a~Kfq~yf~n~Pll~vpg~------~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDil 257 (699)
T KOG0925|consen 189 ---RPDLKLVVMSATL--DAEKFQRYFGNAPLLAVPGT------HPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDIL 257 (699)
T ss_pred ---CCCceEEEeeccc--chHHHHHHhCCCCeeecCCC------CceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEE
Confidence 1456899999998 45556665656666544331 1223344333333333322 2222344678999
Q ss_pred EEcCChHHHHHHHHHHHhc----C--CCcceEEEccccCCHHHHHHHHHHHhc---C--CccEEEEecccccCCCCCCCC
Q 009641 337 VFTSSVESTHRLCTLLNHF----G--ELRIKIKEYSGLQRQSVRSKTLKAFRE---G--KIQVLVSSDAMTRGMDVEGVN 405 (530)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~----~--~~~~~v~~~h~~~~~~~R~~~~~~f~~---g--~~~iLVaT~~~~~GiDip~~~ 405 (530)
||....++.+..++.+... + ....++..+| +.+...+.+-... | ..+|+|+|++++..+-++++.
T Consensus 258 vFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv 333 (699)
T KOG0925|consen 258 VFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIV 333 (699)
T ss_pred EEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEE
Confidence 9999999988888877632 1 1235677777 3333333332221 2 367999999999999999999
Q ss_pred EEEEccC------------------CCChhHHHHHHhhhhcCCCCccEEEEeecc
Q 009641 406 NVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (530)
Q Consensus 406 ~VI~~~~------------------p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~ 442 (530)
+||+-+. |.|..+-.||.||+||. ++|+|+-++++.
T Consensus 334 ~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 334 FVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9998553 44566778999999997 789999999875
No 148
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=4.1e-16 Score=139.36 Aligned_cols=147 Identities=22% Similarity=0.212 Sum_probs=90.5
Q ss_pred ccchhhHHHHHHhcCCCCC---CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 50 SLFPVQVAVWQETIGPGLF---ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~---~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
+|+++|.+|+..++..+.. .+++++.+|||||||.+++..+..... ++++++|+..|+.|+.+.+..+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 6899999999988754433 478999999999999987754444432 799999999999999999977654
Q ss_pred ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCC----------CCCC
Q 009641 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG----------FTLE 196 (530)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~----------~~~~ 196 (530)
................. ....................+++++|.+.+......... ....
T Consensus 76 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSK----------EFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp TSEEEEE--GGGCCE-S----------EEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred hhhhhcccccccccccc----------cccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 32111000000000000 000000000011112234579999999999887653211 2344
Q ss_pred CccEEEEechhHhhhHh
Q 009641 197 HLCYLVVDETDRLLREA 213 (530)
Q Consensus 197 ~~~~lViDEah~~~~~~ 213 (530)
.+++||+||||++....
T Consensus 146 ~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp SESEEEEETGGCTHHHH
T ss_pred cCCEEEEehhhhcCCHH
Confidence 67899999999986655
No 149
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.64 E-value=1.3e-14 Score=123.54 Aligned_cols=120 Identities=39% Similarity=0.664 Sum_probs=91.4
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHh
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 149 (530)
+++++.+|||+|||.+++..+....... ...+++|++|++.++.|+.+.+...... +..+....+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE---- 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH----
Confidence 4689999999999999888877766552 3458999999999999999998888664 56777777765443332
Q ss_pred hcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhh
Q 009641 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214 (530)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~ 214 (530)
.......+|+++|++.+...+.... .....++++|+||+|.+.....
T Consensus 74 -----------------~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~ 120 (144)
T cd00046 74 -----------------KLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGF 120 (144)
T ss_pred -----------------HHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcch
Confidence 1223567999999999988776632 3355789999999999866543
No 150
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.61 E-value=7e-14 Score=146.89 Aligned_cols=340 Identities=19% Similarity=0.163 Sum_probs=196.5
Q ss_pred ccchhhHHHHHHhcC----CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 50 SLFPVQVAVWQETIG----PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~----~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
.-+.+|-+|++.+.. ....|--++-.|.||+|||++=.- |...+... ..+.+..|..-.|.|..|..+.+++.+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~-~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD-KQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC-CCCceEEEEccccceeccchHHHHHhc
Confidence 356789999876543 111223366689999999997544 44444443 356688888899999999999999987
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCcc--cc----------------CccCCch----hHHHhhcC--------CCcE
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKL--EA----------------GICYDPE----DVLQELQS--------AVDI 175 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~--~~----------------~~~~~~~----~~~~~~~~--------~~~I 175 (530)
.-.+-...+++|+....+-.......... .. .+.+++. .+...+.. ...|
T Consensus 486 ~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 486 NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 66566788888887655444321111100 00 1112111 11112221 2579
Q ss_pred EEeCChHHHHHHhcCC--CCCCC----CccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhh
Q 009641 176 LVATPGRLMDHINATR--GFTLE----HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (530)
Q Consensus 176 li~Tp~~l~~~l~~~~--~~~~~----~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (530)
+|+|++.++......+ ...+. .-+.|||||+|.+ +......+..++......
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~l--------------------- 623 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLL--------------------- 623 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHc---------------------
Confidence 9999999988763211 22111 1368999999987 333334455555433221
Q ss_pred hhccccccCCCCCCCCceeeEEEeEeecCChhhhh-hhc----------cC---CceEE--e-cCC---c--cc------
Q 009641 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA-QLD----------LH---HPLFL--T-TGE---T--RY------ 301 (530)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~-~~~----------~~---~~~~~--~-~~~---~--~~------ 301 (530)
...++++|||+|+...... ..+ .. .++.+ . ... . ..
T Consensus 624 ----------------G~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F 687 (1110)
T TIGR02562 624 ----------------GSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEF 687 (1110)
T ss_pred ----------------CCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHH
Confidence 1168999999987754311 111 11 11111 0 000 0 00
Q ss_pred -------------cCc--ccceeeEe-eccCC-----CcHHHHHHHHHh--------c------CCC---cEEEEcCChH
Q 009641 302 -------------KLP--ERLESYKL-ICESK-----LKPLYLVALLQS--------L------GEE---KCIVFTSSVE 343 (530)
Q Consensus 302 -------------~~~--~~~~~~~~-~~~~~-----~k~~~l~~~l~~--------~------~~~---~~iVf~~s~~ 343 (530)
.+. .....-.+ .+... .....+...+.. . .+. =.+|-+++++
T Consensus 688 ~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~ 767 (1110)
T TIGR02562 688 IQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANID 767 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCch
Confidence 000 00000111 11111 112222222210 0 112 2477788888
Q ss_pred HHHHHHHHHHhcC---CCcceEEEccccCCHHHHHHHHHHH----------------------hc----CCccEEEEecc
Q 009641 344 STHRLCTLLNHFG---ELRIKIKEYSGLQRQSVRSKTLKAF----------------------RE----GKIQVLVSSDA 394 (530)
Q Consensus 344 ~~~~l~~~L~~~~---~~~~~v~~~h~~~~~~~R~~~~~~f----------------------~~----g~~~iLVaT~~ 394 (530)
.+-.+++.|-... ...+.+.+||+..+...|..+++.. ++ +...|+|+|++
T Consensus 768 p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv 847 (1110)
T TIGR02562 768 PLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPV 847 (1110)
T ss_pred HHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeee
Confidence 8888888876542 1335688999999988888776553 11 46789999999
Q ss_pred cccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCC
Q 009641 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (530)
Q Consensus 395 ~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~ 432 (530)
++.|+|+. .+++|- -|.+..+.+||.||+.|.|..
T Consensus 848 ~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 848 EEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred EEEEeccc-CCeeee--ccCcHHHHHHHhhcccccccC
Confidence 99999994 676654 355699999999999998755
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.60 E-value=3e-15 Score=114.33 Aligned_cols=81 Identities=43% Similarity=0.709 Sum_probs=75.0
Q ss_pred HHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhh
Q 009641 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (530)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~ 426 (530)
.+++.|...+ +.+..+||+++..+|..+++.|.++...|||+|+++++|+|+|.+++||.+++|.+...|.|++||+
T Consensus 2 ~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELG---IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCC---CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 3566676654 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 009641 427 ARAG 430 (530)
Q Consensus 427 gR~g 430 (530)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 152
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.60 E-value=9.4e-14 Score=143.65 Aligned_cols=107 Identities=19% Similarity=0.273 Sum_probs=94.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCC--ccEEEEecccccCCCCCCCCEEEEc
Q 009641 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVVNY 410 (530)
Q Consensus 333 ~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~iLVaT~~~~~GiDip~~~~VI~~ 410 (530)
+++|||+.-.++.+.+-.+|+.+| +-...+.|...-++|...+++|..+. ...+++|...+.|||+.+++.||+|
T Consensus 1277 hRvLIfTQMtkmLDVLeqFLnyHg---ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1277 HRVLIFTQMTKMLDVLEQFLNYHG---YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred ceEEehhHHHHHHHHHHHHHhhcc---eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEe
Confidence 699999999999999999998877 78888999999999999999999764 4567899999999999999999999
Q ss_pred cCCCChhHHHHHHhhhhcCCCCccEEEE--eecc
Q 009641 411 DKPAYIKTYIHRAGRTARAGQLGRCFTL--LHKD 442 (530)
Q Consensus 411 ~~p~s~~~y~Qr~GR~gR~g~~g~~i~~--~~~~ 442 (530)
|..+++.--.|..-|+.|.|+.-.+.+| ++..
T Consensus 1354 DsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1354 DSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred cCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999889999999999888666654 5544
No 153
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.58 E-value=2.3e-14 Score=146.89 Aligned_cols=356 Identities=18% Similarity=0.191 Sum_probs=206.5
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
-++.+||...++..+.....+-+.|+...+|.|||..... ++..+...+.....-||+||+..|.+ |..++..+++
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaP-- 468 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAP-- 468 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHcccCCCeEEeccccccCC-chhhcccccc--
Confidence 3899999999998776665667899999999999987544 44444443333335799999999877 6666666544
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
.+....+.|.......... +......+|+++|++.+..- + ..+.--++.++||||.|+
T Consensus 469 Sv~~i~YkGtp~~R~~l~~-------------------qir~gKFnVLlTtyEyiikd--k-~lLsKI~W~yMIIDEGHR 526 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTK-------------------QQRHGKFNVLLTTYEYIIKD--K-ALLSKISWKYMIIDEGHR 526 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHH-------------------HHhcccceeeeeeHHHhcCC--H-HHHhccCCcceeeccccc
Confidence 2455555554432222111 11224579999998877541 1 111122477999999999
Q ss_pred hhhHh----------hhhHHHHHHhhcccCcccccccc----cccccccccchhhhhcccccc-----------------
Q 009641 209 LLREA----------YQAWLPTVLQLTRSDNENRFSDA----STFLPSAFGSLKTIRRCGVER----------------- 257 (530)
Q Consensus 209 ~~~~~----------~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----------------- 257 (530)
|.+.. +....+.++.-++ ..+..++. .-.+|.++.+...+..+....
T Consensus 527 mKNa~~KLt~~L~t~y~~q~RLLLTGTP--LQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlL 604 (1157)
T KOG0386|consen 527 MKNAICKLTDTLNTHYRAQRRLLLTGTP--LQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLL 604 (1157)
T ss_pred ccchhhHHHHHhhccccchhhhhhcCCh--hhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHH
Confidence 84321 1111111111111 01111111 111233333322222111000
Q ss_pred ------------------CCCCCCCCc----eeeEEEeEeec---------------------------CChhhhhhhcc
Q 009641 258 ------------------GFKDKPYPR----LVKMVLSATLT---------------------------QDPNKLAQLDL 288 (530)
Q Consensus 258 ------------------~~~~~~~~~----~~~i~~SaT~~---------------------------~~~~~~~~~~~ 288 (530)
.--+...|. +...-+||--. +.+. ..+...
T Consensus 605 IIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~im-qLRKiC 683 (1157)
T KOG0386|consen 605 IIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIM-QLRKLC 683 (1157)
T ss_pred HHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhH-HHHHhc
Confidence 000000000 00111111100 0000 000111
Q ss_pred CCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEcc
Q 009641 289 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366 (530)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h 366 (530)
.+|..+.--.......... ........|+..|..++.+. .+++++.||.-......+..+|.-.. ++...+.
T Consensus 684 NHP~lf~~ve~~~~~~~~~---~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~---~kYlRLD 757 (1157)
T KOG0386|consen 684 NHPYLFANVENSYTLHYDI---KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIRE---YKYLRLD 757 (1157)
T ss_pred CCchhhhhhccccccccCh---hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhh---hheeeec
Confidence 2222110000000000000 11122456777777777643 57899999999888888888887655 7888999
Q ss_pred ccCCHHHHHHHHHHHhcCC---ccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEe
Q 009641 367 GLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439 (530)
Q Consensus 367 ~~~~~~~R~~~~~~f~~g~---~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~ 439 (530)
|.....+|...++.|..-. ...|.+|.+.+.|+|+..++.||.||.-+++....|+.-|+.|.|+...+-++.
T Consensus 758 G~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 758 GQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred CCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999654 346899999999999999999999999999999999999999999886555543
No 154
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.56 E-value=2.9e-13 Score=133.85 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=104.4
Q ss_pred CCCcHHHHHHHHHh--cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCc-cEEEEe
Q 009641 316 SKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI-QVLVSS 392 (530)
Q Consensus 316 ~~~k~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~-~iLVaT 392 (530)
...|+..|..+|.. ..++++|+|+.-.++.+.+.++|...+ +....+.|.....+|..++++|+..++ -.|++|
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~---Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLST 1102 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRG---YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLST 1102 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhc---cceEEecCcchhhHHHHHHhhccCCceEEEEEec
Confidence 45677777777764 357899999999999999999998776 888999999999999999999997654 458999
Q ss_pred cccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEE
Q 009641 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (530)
Q Consensus 393 ~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~ 438 (530)
.+.+-||++..++.||+||..+++..-.|...||.|.|+...+.+|
T Consensus 1103 RAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1103 RAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred ccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 9999999999999999999999999999999999999988554443
No 155
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.54 E-value=9.4e-12 Score=121.58 Aligned_cols=337 Identities=17% Similarity=0.222 Sum_probs=215.0
Q ss_pred cCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEE------Eeec----CCc----------hHHHHHHHhh---cCc
Q 009641 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG------LAVG----QSS----------IADEISELIK---RPK 153 (530)
Q Consensus 97 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~------~~~g----~~~----------~~~~~~~~~~---~~~ 153 (530)
++-..++||||+|+|..|.++.+.+.++++.. ..+. .-+| +.. ..++...+.. .-.
T Consensus 33 QGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~-~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~ 111 (442)
T PF06862_consen 33 QGFTRPKVLILLPFRNSALRIVETLISLLPPG-KQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDC 111 (442)
T ss_pred cCCCCceEEEEcccHHHHHHHHHHHHHHcCcc-chHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccce
Confidence 34457899999999999999999999887652 0000 0001 000 0001111110 000
Q ss_pred cccCccCCchhHHHhh-cCCCcEEEeCChHHHHHHhcC----CC-CCCCCccEEEEechhHhhhHhhhhHHHHHHhhccc
Q 009641 154 LEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINAT----RG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (530)
Q Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~l~~~----~~-~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~ 227 (530)
+..|+.++...+.-.. -...|||||+|=-|...+... .. --++++.++|+|.||.++-++| +++..+++++..
T Consensus 112 FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~ 190 (442)
T PF06862_consen 112 FRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNL 190 (442)
T ss_pred EEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhcc
Confidence 1222223222221111 134799999999998888742 11 2378999999999998876665 567777777665
Q ss_pred Ccc-cccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCc---eEEecCCc----
Q 009641 228 DNE-NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP---LFLTTGET---- 299 (530)
Q Consensus 228 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~---~~~~~~~~---- 299 (530)
... ..-.+.....+.++......-+ |++++|+...+++..+....+.+. +.+.....
T Consensus 191 ~P~~~~~~DfsRVR~w~Ldg~a~~~R---------------Qtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~ 255 (442)
T PF06862_consen 191 QPKKSHDTDFSRVRPWYLDGQAKYYR---------------QTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGV 255 (442)
T ss_pred CCCCCCCCCHHHHHHHHHcCcchhee---------------EeEEecCCCCHHHHHHHHhhCcCccceEEEeecccccee
Confidence 443 2224445555555554443333 899999999988888777644332 22211111
Q ss_pred cccCcccceeeEeecc-------CCCcHHHHHH-H---HH-hcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccc
Q 009641 300 RYKLPERLESYKLICE-------SKLKPLYLVA-L---LQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367 (530)
Q Consensus 300 ~~~~~~~~~~~~~~~~-------~~~k~~~l~~-~---l~-~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~ 367 (530)
...+...+.|.....+ .+.++..... + +. ....+.+|||++|--+=-++..+|.+.. +....+|-
T Consensus 256 i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~---~sF~~i~E 332 (442)
T PF06862_consen 256 ISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN---ISFVQISE 332 (442)
T ss_pred eeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC---CeEEEecc
Confidence 1122233334433221 1223332222 2 22 4456799999999998888999998654 77788888
Q ss_pred cCCHHHHHHHHHHHhcCCccEEEEecc--cccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCC------CccEEEEe
Q 009641 368 LQRQSVRSKTLKAFREGKIQVLVSSDA--MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ------LGRCFTLL 439 (530)
Q Consensus 368 ~~~~~~R~~~~~~f~~g~~~iLVaT~~--~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~------~g~~i~~~ 439 (530)
-.+..+-.++-..|..|+.+||+.|.- +-+-..+.++..||.|++|..+.-|...+.-.+.... ...|.+++
T Consensus 333 Yts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~ly 412 (442)
T PF06862_consen 333 YTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLY 412 (442)
T ss_pred cCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEe
Confidence 889999999999999999999999974 4456788899999999999999988877765544332 47999999
Q ss_pred ecchHHHHHHHHHH
Q 009641 440 HKDEVKRFKKLLQK 453 (530)
Q Consensus 440 ~~~~~~~~~~~~~~ 453 (530)
+..|...++++...
T Consensus 413 sk~D~~~LErIVGt 426 (442)
T PF06862_consen 413 SKYDALRLERIVGT 426 (442)
T ss_pred cHhHHHHHHHHhCH
Confidence 99998888877544
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.53 E-value=2.2e-12 Score=134.41 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=78.9
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhc
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 151 (530)
.+..+.+|||||.+|+-.+-..+.. |..+|||+|...|+.|+.+.++..+. +..+..++++.+..+....
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~----Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~---- 232 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRA----GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRR---- 232 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHc----CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHH----
Confidence 3444556999999998876666654 44799999999999999999998753 2568889998877766433
Q ss_pred CccccCccCCchhHHHhhcC-CCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 152 PKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
|..+.. ..+|+|+|-.- -...+.++++||+||-|.
T Consensus 233 --------------w~~~~~G~~~IViGtRSA--------vFaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 233 --------------WLAVLRGQARVVVGTRSA--------VFAPVEDLGLVAIWDDGD 268 (665)
T ss_pred --------------HHHHhCCCCcEEEEccee--------EEeccCCCCEEEEEcCCc
Confidence 444444 47999999322 123688999999999994
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.52 E-value=9.4e-13 Score=125.35 Aligned_cols=110 Identities=20% Similarity=0.204 Sum_probs=89.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcC-CccE-EEEecccccCCCCCCCCEEEEc
Q 009641 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVSSDAMTRGMDVEGVNNVVNY 410 (530)
Q Consensus 333 ~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~i-LVaT~~~~~GiDip~~~~VI~~ 410 (530)
-+.|||.......+.+.=.|.+.| +.+.-+.|+|++..|...++.|++. ++.| |++-.+.+.-+|+..+++|+.+
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaG---fscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAG---FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccC---ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 366777776666666666666555 8999999999999999999999976 4555 4666777777999999999999
Q ss_pred cCCCChhHHHHHHhhhhcCCCC--ccEEEEeecchHH
Q 009641 411 DKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVK 445 (530)
Q Consensus 411 ~~p~s~~~y~Qr~GR~gR~g~~--g~~i~~~~~~~~~ 445 (530)
|+-+++.--.|...|..|.|+. -.++.|+.++..+
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE 752 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIE 752 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeehhccHH
Confidence 9999999999999999998865 5778888877543
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.48 E-value=2.4e-12 Score=127.59 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=92.4
Q ss_pred cHHHHHHHHHh---cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhc--CCccE-EEEe
Q 009641 319 KPLYLVALLQS---LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQV-LVSS 392 (530)
Q Consensus 319 k~~~l~~~l~~---~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~i-LVaT 392 (530)
|...+...++. ....+++|...-.....-+...|+..| .....+||....++|..+++.|.. |...| |++-
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g---~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGG---HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCC---eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 44444444442 345677776666666677777777665 788899999999999999999984 43444 5666
Q ss_pred cccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEE
Q 009641 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (530)
Q Consensus 393 ~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~ 438 (530)
.+.+.|+|+-+.+|+|..|+.|++.--.|..-|..|.|++..+++.
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 7888999999999999999999999999999999999999766653
No 159
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.46 E-value=4.5e-13 Score=126.99 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=66.5
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC--CcccEEEEcCcHHHHHHHHHHHHH
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~--~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
|.| +|+|.|.+.+..+...+..+.++++.||||+|||+++++|++..+...+. .+.+++|.++|..+..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 677 56999999888888877788999999999999999999999987765432 234899999999999998888877
Q ss_pred hc
Q 009641 124 IA 125 (530)
Q Consensus 124 ~~ 125 (530)
..
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 63
No 160
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.46 E-value=4.5e-13 Score=126.99 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=66.5
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC--CcccEEEEcCcHHHHHHHHHHHHH
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~--~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
|.| +|+|.|.+.+..+...+..+.++++.||||+|||+++++|++..+...+. .+.+++|.++|..+..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 677 56999999888888877788999999999999999999999987765432 234899999999999998888877
Q ss_pred hc
Q 009641 124 IA 125 (530)
Q Consensus 124 ~~ 125 (530)
..
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 63
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.43 E-value=7.9e-12 Score=129.25 Aligned_cols=356 Identities=19% Similarity=0.196 Sum_probs=201.6
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|+ .++.+|.- ..+.....-++.+.||-|||+++.+|+.-.... |..+.+++..--||.--++++.++.
T Consensus 77 lg~-~~~dVQli------G~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~----gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 77 LGM-RHFDVQLL------GGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA----GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred cCC-ChhhHHHh------hhhhhcCCceeeeecCCchHHHHHHHHHHHhcC----CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 565 77778853 344456678999999999999999998655444 3369999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcC-----CCCCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~-----~~~~~~~~~ 199 (530)
.++|+++++...+.+..++... ..+||.++|-..| ++.++.. .......+.
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~a-----------------------Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~ 202 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAA-----------------------YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLN 202 (822)
T ss_pred HHcCCceeeccCCCChHHHHHH-----------------------HhcCceeccccccCcchhhhhhhccHHHhhhccCC
Confidence 9999999999999876665443 4569999998655 2222211 112244688
Q ss_pred EEEEechhHhhh----------H------hhhhHHHHHHhhcccCcccccccccc----------ccccccc--chhhhh
Q 009641 200 YLVVDETDRLLR----------E------AYQAWLPTVLQLTRSDNENRFSDAST----------FLPSAFG--SLKTIR 251 (530)
Q Consensus 200 ~lViDEah~~~~----------~------~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~ 251 (530)
+.|+||+|.++= . ..+..+..+...+.....-.+..-.. -...+++ .+....
T Consensus 203 faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~e 282 (822)
T COG0653 203 FAIVDEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLE 282 (822)
T ss_pred eEEEcchhheeeeccccceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchh
Confidence 999999998631 1 11222333332222111000000000 0000000 000000
Q ss_pred ccc-----------------------------cccC----------CCCC------------CCCcee------------
Q 009641 252 RCG-----------------------------VERG----------FKDK------------PYPRLV------------ 268 (530)
Q Consensus 252 ~~~-----------------------------~~~~----------~~~~------------~~~~~~------------ 268 (530)
... +.+. +.+. ..+.-+
T Consensus 283 n~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR 362 (822)
T COG0653 283 NVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFR 362 (822)
T ss_pred hHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHh
Confidence 000 0000 0000 000000
Q ss_pred ----eEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHH--hcCCCcEEEEcCCh
Q 009641 269 ----KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSV 342 (530)
Q Consensus 269 ----~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~iVf~~s~ 342 (530)
...+++|.......+...+..+.+.+.+.......+. .-.+......|...+...+. ...+.|+||-+.++
T Consensus 363 ~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTnrp~~R~D~---~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~si 439 (822)
T COG0653 363 LYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNRPIIRLDE---PDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSI 439 (822)
T ss_pred hhhhhcCCCCcchhhhhhhhhccCCceeeccCCCcccCCCC---ccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcce
Confidence 1112222222222222222222222222211110000 00111223445555555443 34688999999999
Q ss_pred HHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCC-----------EEEEcc
Q 009641 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN-----------NVVNYD 411 (530)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~-----------~VI~~~ 411 (530)
+..+.+.+.|.+.+ ++-.+++......+-..+.+.-+ .-.|-|||+++++|-||.--. +||-..
T Consensus 440 e~SE~ls~~L~~~~---i~h~VLNAk~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTE 514 (822)
T COG0653 440 EKSELLSKLLRKAG---IPHNVLNAKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTE 514 (822)
T ss_pred ecchhHHHHHHhcC---CCceeeccccHHHHHHHHhhcCC--CCccccccccccCCcccccCCCHHHHHHhCCcEEEecc
Confidence 99999999999876 55566666655333333322222 235779999999999987222 456555
Q ss_pred CCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 412 ~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
--.|-.---|-.||+||.|.+|.+-.|++-+|
T Consensus 515 RhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 515 RHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred cchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 55566666699999999999999998888765
No 162
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=3.2e-11 Score=116.07 Aligned_cols=381 Identities=18% Similarity=0.235 Sum_probs=226.3
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEE-ECCCCchH--HHHHHHHHHHHhhhc---------------------------C
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCI-NSPTGSGK--TLSYALPIVQTLSNR---------------------------A 98 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li-~apTGsGK--T~~~~~~~l~~l~~~---------------------------~ 98 (530)
..+++.|.+.+... ...+|++. ....+.|+ +-+|.+.+++++.+. +
T Consensus 215 ~pltalQ~~L~~~m----~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG 290 (698)
T KOG2340|consen 215 EPLTALQKELFKIM----FNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQG 290 (698)
T ss_pred CcchHHHHHHHHHH----HhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcC
Confidence 46899998865432 34577654 22234455 455777777777531 1
Q ss_pred CCcccEEEEcCcHHHHHHHHHHHHHhccccCc-e--E-------EEeecCC-------chHHHHHHHhh---cCccccCc
Q 009641 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGL-S--V-------GLAVGQS-------SIADEISELIK---RPKLEAGI 158 (530)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~-~--v-------~~~~g~~-------~~~~~~~~~~~---~~~~~~~~ 158 (530)
...++||||||+|+-|-.+.+.+..++...+- + | +-+.|.+ ...++...+.. .--+..|.
T Consensus 291 ~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl 370 (698)
T KOG2340|consen 291 FTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGL 370 (698)
T ss_pred CCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhH
Confidence 13578999999999999999998887433211 0 0 0111100 00111111110 01122333
Q ss_pred cCCchhHHHhhc-CCCcEEEeCChHHHHHHhcCCC----C-CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCccc-
Q 009641 159 CYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG----F-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN- 231 (530)
Q Consensus 159 ~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~----~-~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~- 231 (530)
.++...+...-. ...||+||+|=-|...+.+.+. + .++++.++|||.||.++-++| +++..++.++...+..
T Consensus 371 ~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~ 449 (698)
T KOG2340|consen 371 AFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQ 449 (698)
T ss_pred HHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccc
Confidence 333333322211 3479999999998888874322 2 367899999999999987776 4567777766543322
Q ss_pred ccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCC---ceEEe----c---CCccc
Q 009641 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH---PLFLT----T---GETRY 301 (530)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~---~~~~~----~---~~~~~ 301 (530)
.-.+.+...+.++..-...-+ |+++||+-..+....+....+.+ .+... . +....
T Consensus 450 h~~DfSRVR~wyL~~qsr~~r---------------Qtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~ 514 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFR---------------QTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGI 514 (698)
T ss_pred cCCChhheehheeccHHHHHH---------------HHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccc
Confidence 333445555666555444443 77888877655554444333222 11111 0 01111
Q ss_pred cCcccceeeE---eeccCCCcHHHHHHH-HH---hcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHH
Q 009641 302 KLPERLESYK---LICESKLKPLYLVAL-LQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (530)
Q Consensus 302 ~~~~~~~~~~---~~~~~~~k~~~l~~~-l~---~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R 374 (530)
++....+.+. +......++...... +. ......+|||.|+.-.--++..++.+.. +....+|--.+...-
T Consensus 515 ~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~---i~F~~i~EYssk~~v 591 (698)
T KOG2340|consen 515 PLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE---ISFVMINEYSSKSKV 591 (698)
T ss_pred hhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh---cchHHHhhhhhHhhh
Confidence 1222222211 112233444443332 22 2234578999999888888888888754 444455555555666
Q ss_pred HHHHHHHhcCCccEEEEecc--cccCCCCCCCCEEEEccCCCChhHH---HHHHhhhhcCCCC----ccEEEEeecchHH
Q 009641 375 SKTLKAFREGKIQVLVSSDA--MTRGMDVEGVNNVVNYDKPAYIKTY---IHRAGRTARAGQL----GRCFTLLHKDEVK 445 (530)
Q Consensus 375 ~~~~~~f~~g~~~iLVaT~~--~~~GiDip~~~~VI~~~~p~s~~~y---~Qr~GR~gR~g~~----g~~i~~~~~~~~~ 445 (530)
.++-+-|..|...||+-|.- +-+-.++.++..||+|.+|.++.-| +-+.+|+.-.|+. -.|.+++++.|.-
T Consensus 592 sRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i 671 (698)
T KOG2340|consen 592 SRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRI 671 (698)
T ss_pred hHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhH
Confidence 67778899999999999975 3467899999999999999987755 5777777655432 5788899998877
Q ss_pred HHHHHHH
Q 009641 446 RFKKLLQ 452 (530)
Q Consensus 446 ~~~~~~~ 452 (530)
.+..+..
T Consensus 672 ~Le~ivG 678 (698)
T KOG2340|consen 672 RLENIVG 678 (698)
T ss_pred HHHHhhh
Confidence 7766543
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.34 E-value=1.4e-11 Score=100.12 Aligned_cols=105 Identities=19% Similarity=0.158 Sum_probs=66.6
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 147 (530)
+|+--++-.++|+|||.-.+.-++..... ++.++|||.|||.++..+.+.++.. ++++....-.. .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~----~--- 68 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR----T--- 68 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS---------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec----c---
Confidence 45667889999999998654444444433 4558999999999999988888643 23322111100 0
Q ss_pred HhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
...+.-|-++|...+...+.+ .....++++||+||||..
T Consensus 69 ---------------------~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 69 ---------------------HFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--
T ss_pred ---------------------ccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccC
Confidence 013347888999998887766 334678999999999975
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.32 E-value=2.5e-10 Score=117.59 Aligned_cols=294 Identities=18% Similarity=0.209 Sum_probs=161.9
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHh
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 149 (530)
.-.+|.||+|||||.+..-++-+.+. .++.++|+++.++.|+.++.+.++...-. |+....-.++....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~---~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~------- 118 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK---NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIID------- 118 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc---CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeecccccccc-------
Confidence 34788999999999875444443332 24568999999999999999998865211 22111111111000
Q ss_pred hcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHH---HHHhhcc
Q 009641 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP---TVLQLTR 226 (530)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~---~i~~~~~ 226 (530)
....+-+++..+.|..... ..+.++++||+||+-..++.-+...++ .+...+.
T Consensus 119 --------------------~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~ 174 (824)
T PF02399_consen 119 --------------------GRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLK 174 (824)
T ss_pred --------------------ccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHH
Confidence 0123667777666654432 235679999999999877653322222 2222111
Q ss_pred cCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhcc-CCceEEecCC-------
Q 009641 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-HHPLFLTTGE------- 298 (530)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-~~~~~~~~~~------- 298 (530)
.. ++. .-.+|++-|++....-++..... .+++.+....
T Consensus 175 ~l---------------------I~~-------------ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs 220 (824)
T PF02399_consen 175 EL---------------------IRN-------------AKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFS 220 (824)
T ss_pred HH---------------------HHh-------------CCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcc
Confidence 00 000 00355666666544433333211 1111111000
Q ss_pred ---------------------ccccCcc------cceeeEeeccCCCcHHHHHHHHHhc-CCCcEEEEcCChHHHHHHHH
Q 009641 299 ---------------------TRYKLPE------RLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCT 350 (530)
Q Consensus 299 ---------------------~~~~~~~------~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~ 350 (530)
....... .-..................++... .+.++-||++|...++.+++
T Consensus 221 ~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~ 300 (824)
T PF02399_consen 221 NRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVAR 300 (824)
T ss_pred cceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHH
Confidence 0000000 0000000000112223333444433 35667789999999999998
Q ss_pred HHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCC--CEEEEccCC----CChhHHHHHHh
Q 009641 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV--NNVVNYDKP----AYIKTYIHRAG 424 (530)
Q Consensus 351 ~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~--~~VI~~~~p----~s~~~y~Qr~G 424 (530)
...... .++..++|.-+..+. +.| ++.+|++-|+++..|+++... +-+.-|=-| .+..+..|++|
T Consensus 301 ~~~~~~---~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lg 371 (824)
T PF02399_consen 301 FCARFT---KKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLG 371 (824)
T ss_pred HHHhcC---CeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHH
Confidence 887664 688888886655422 223 568999999999999999753 334433222 34557899999
Q ss_pred hhhcCCCCccEEEEeecc
Q 009641 425 RTARAGQLGRCFTLLHKD 442 (530)
Q Consensus 425 R~gR~g~~g~~i~~~~~~ 442 (530)
|+ |.=.....+++++..
T Consensus 372 Rv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 372 RV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred HH-HhhccCeEEEEEecc
Confidence 99 544567788887765
No 165
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.32 E-value=3.8e-11 Score=133.86 Aligned_cols=123 Identities=21% Similarity=0.230 Sum_probs=103.9
Q ss_pred CcHHHHHHHH-H--hcCCC--cEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcC--CccEEE
Q 009641 318 LKPLYLVALL-Q--SLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLV 390 (530)
Q Consensus 318 ~k~~~l~~~l-~--~~~~~--~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~iLV 390 (530)
.|...+..++ . ...+. +++||+........+...+...+ +....++|+++...|...++.|.++ ..-+++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~---~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ll 768 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG---IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLL 768 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC---CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEE
Confidence 5666676666 2 22345 89999999999999999998865 7788999999999999999999986 455678
Q ss_pred EecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEE--Eeecch
Q 009641 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKDE 443 (530)
Q Consensus 391 aT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~--~~~~~~ 443 (530)
++.+.+.|+|+..+++||++|+.+++....|...|+.|.|++..+.+ ++..+.
T Consensus 769 s~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 769 SLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred EecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 88899999999999999999999999999999999999998865444 455543
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.16 E-value=1.7e-10 Score=111.62 Aligned_cols=131 Identities=21% Similarity=0.164 Sum_probs=79.9
Q ss_pred hhHHHHHHhcCCC---------CCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC--cccEEEEcCcHHHHHHHHHHHH
Q 009641 54 VQVAVWQETIGPG---------LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPTRDLALQVKDVFA 122 (530)
Q Consensus 54 ~Q~~a~~~~~~~~---------~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~--~~~~lil~Pt~~L~~Q~~~~l~ 122 (530)
+|.+++..++... ...+.+++...+|+|||...+..+ ..+...... ...+||+||. .+..||.+++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALI-SYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHH-HHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhh-hhhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 4666665544332 345679999999999998865543 344332211 1259999999 88899999999
Q ss_pred HhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHH-----HHHhcCCCCCCCC
Q 009641 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-----DHINATRGFTLEH 197 (530)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-----~~l~~~~~~~~~~ 197 (530)
+++.....++..+.|....... ........+++|+|++.+. ..... +.--.
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~ 134 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRL---------------------SKNQLPKYDVVITTYETLRKARKKKDKED---LKQIK 134 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHT---------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSE
T ss_pred cccccccccccccccccccccc---------------------cccccccceeeeccccccccccccccccc---ccccc
Confidence 9986556778877776611110 0112245799999999998 11111 11134
Q ss_pred ccEEEEechhHhh
Q 009641 198 LCYLVVDETDRLL 210 (530)
Q Consensus 198 ~~~lViDEah~~~ 210 (530)
+++||+||+|.+-
T Consensus 135 ~~~vIvDEaH~~k 147 (299)
T PF00176_consen 135 WDRVIVDEAHRLK 147 (299)
T ss_dssp EEEEEETTGGGGT
T ss_pred ceeEEEecccccc
Confidence 8999999999983
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.15 E-value=1.5e-08 Score=110.80 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=75.5
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (530)
++..+|+=-||||||++.+..+- .+... ...++++|||-++.|-.|+.+.+..+........ ...+.+
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~-~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~------ 340 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLAR-LLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTS------ 340 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHH-HHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHH------
Confidence 35699999999999998655433 33333 4667999999999999999999999865432111 111111
Q ss_pred hhcCccccCccCCchhHHHhhcCC-CcEEEeCChHHHHHHhcCCCC-CCCCccEEEEechhHh
Q 009641 149 IKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRL 209 (530)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~Ili~Tp~~l~~~l~~~~~~-~~~~~~~lViDEah~~ 209 (530)
.+.+.+... ..|+|+|-+.|-......... .-..=-+||+||||+-
T Consensus 341 ---------------~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 341 ---------------ELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred ---------------HHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 222233332 489999999998777553111 1223348899999985
No 168
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.12 E-value=6.2e-09 Score=106.85 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=94.5
Q ss_pred HHHHHHHHh--cCCCcEEEEcCChHHHHHHHHHHHhcCC-------------------CcceEEEccccCCHHHHHHHHH
Q 009641 321 LYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGLQRQSVRSKTLK 379 (530)
Q Consensus 321 ~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~L~~~~~-------------------~~~~v~~~h~~~~~~~R~~~~~ 379 (530)
..|+.+|+. .-+.+.|||..+......|..+|..... .+.....+.|......|....+
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 344455442 2357999999999999998888854211 1234567788999999999999
Q ss_pred HHhcCC----ccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEE
Q 009641 380 AFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (530)
Q Consensus 380 ~f~~g~----~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~ 438 (530)
.|.+-. .-.||+|.+.+-|||+-.++-||+||..|++.--.|.+=|+.|+|+..-|++|
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 998642 23589999999999999999999999999999999999999999999777665
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.10 E-value=6.6e-10 Score=113.30 Aligned_cols=388 Identities=17% Similarity=0.209 Sum_probs=204.3
Q ss_pred cccCCccCCCCCCcccCCCCCCCCCCCC-----CCCHHHHHHHHH-----------CCCC-ccchhhHHHHHHhcCCCCC
Q 009641 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLP-----CLDPRLKVALQN-----------MGIS-SLFPVQVAVWQETIGPGLF 68 (530)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~i~~~l~~-----------~g~~-~~~~~Q~~a~~~~~~~~~~ 68 (530)
...-|+++|..+...+..|..+.++.-+ .+++.-....+. +.+. ++.--|.. ..++.....
T Consensus 315 ~~~~s~i~wapP~anwn~w~A~nide~~la~~~~~s~~q~~~~~~~~~~d~e~~~~~a~re~lpva~~~--~~i~q~v~d 392 (1282)
T KOG0921|consen 315 ICSASNISWAPPLQNWNPWRASNIDEEPLAFMSMESISQRIMEKERFKRDEALDKITAQREELPVAQYR--SEILQAVAE 392 (1282)
T ss_pred hccCCCCCCCCccccccccccccCcccccccccccCcccchhhhhhhhcccchhhhhhhhhhCcHHHHH--HHHHHHHhc
Confidence 3456778898888888888877766543 111111111111 0010 11111111 012222223
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCccc-EEEEcCcHHHHHHHHHHHH-HhccccCceEEEeecCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-ALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQSSIADEIS 146 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~-~lil~Pt~~L~~Q~~~~l~-~~~~~~~~~v~~~~g~~~~~~~~~ 146 (530)
+.-++|.+.||+|||..+.-.+++.+..++..... +.+--|++-.+.-+++.+. +-+...+-.| |.....+
T Consensus 393 n~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tv----gy~vRf~--- 465 (1282)
T KOG0921|consen 393 NRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETC----GYNVRFD--- 465 (1282)
T ss_pred CceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccc----ccccccc---
Confidence 55688999999999999988899988876544433 4444588877776666543 2222222111 1110000
Q ss_pred HHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcc
Q 009641 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (530)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~ 226 (530)
...-...-.|+.+|-+.++..+.+. +..+.++|+||.|...-. ...+..++.-+.
T Consensus 466 -------------------Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~--~dfll~~lr~m~ 520 (1282)
T KOG0921|consen 466 -------------------SATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVD--TDFVLIVLREMI 520 (1282)
T ss_pred -------------------ccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccc--hHHHHHHHHhhh
Confidence 0011123479999999999888763 446889999999975322 122222222211
Q ss_pred cCcccccccccccccccccchhhhhccccccCCCCCCCC-ceeeEEEeEeecCChhhhhhhccCCceEEecCC-------
Q 009641 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP-RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE------- 298 (530)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~------- 298 (530)
... ..... .+....+...+....+. -.+..+.++|.+-. .+.......+.....+.
T Consensus 521 ~ty----~dl~v----------~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq--~F~led~~~~~~~vp~~~~~~k~k 584 (1282)
T KOG0921|consen 521 STY----RDLRV----------VLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQ--SFFLEDIIQMTQFVPSEPSQKKRK 584 (1282)
T ss_pred ccc----hhhhh----------hhhhcccchhhhhhhhccccceeeccccccHH--HHHHHHhhhhhhccCCCcCccchh
Confidence 100 00000 00000011111111111 11334555555322 11111111111110000
Q ss_pred -----ccccCcccceeeEeeccC---------------CC-cHHHHHHHHHh----cCCCcEEEEcCChHHHHHHHHHHH
Q 009641 299 -----TRYKLPERLESYKLICES---------------KL-KPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLN 353 (530)
Q Consensus 299 -----~~~~~~~~~~~~~~~~~~---------------~~-k~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~L~ 353 (530)
........-+.+...+++ .. -...+..++.. .-.+-++||.+--.....+..+|.
T Consensus 585 ~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll 664 (1282)
T KOG0921|consen 585 KDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLL 664 (1282)
T ss_pred hcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhh
Confidence 000000000011111111 01 11112222221 234678999999999888888876
Q ss_pred hcCC----CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC----------------
Q 009641 354 HFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------------- 413 (530)
Q Consensus 354 ~~~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p---------------- 413 (530)
.... ..+.+...|+.....+..++.+....|..+++++|.+++..+.+.++..||+.+..
T Consensus 665 ~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~At 744 (1282)
T KOG0921|consen 665 EHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYAT 744 (1282)
T ss_pred hhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeee
Confidence 4321 22566778998888888888888889999999999999999988887777765432
Q ss_pred --CChhHHHHHHhhhhcCCCCccEEEEeecchH
Q 009641 414 --AYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (530)
Q Consensus 414 --~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~ 444 (530)
.+.....||.||+||. ++|.|+.+++....
T Consensus 745 vw~sktn~eqr~gr~grv-R~G~~f~lcs~arF 776 (1282)
T KOG0921|consen 745 VWASKTNLEQRKGRAGRV-RPGFCFHLCSRARF 776 (1282)
T ss_pred ecccccchHhhcccCcee-cccccccccHHHHH
Confidence 2455678999999998 68999988876543
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.10 E-value=1.6e-09 Score=99.78 Aligned_cols=132 Identities=24% Similarity=0.261 Sum_probs=96.1
Q ss_pred HCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.+|+ .|++.|.-++-.+ .+.-|++..||-|||++..+|+.-.... |..|-|++.+..||..-++++..+
T Consensus 73 ~~g~-~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~AL~----G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALNALQ----GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HTS-----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHHHTT----SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHHHHh----cCCcEEEeccHHHhhccHHHHHHH
Confidence 3776 9999999886544 2234999999999999998887766554 447999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHH-HHHhcCC----CC-CCCCc
Q 009641 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINATR----GF-TLEHL 198 (530)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-~~l~~~~----~~-~~~~~ 198 (530)
...+|++++...++.+....... ..++|+++|...+- +.|+..- .. ..+.+
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~-----------------------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREA-----------------------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHH-----------------------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred HHHhhhccccCccccCHHHHHHH-----------------------HhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 99999999999998875544322 23599999998774 3443311 11 24678
Q ss_pred cEEEEechhHhh
Q 009641 199 CYLVVDETDRLL 210 (530)
Q Consensus 199 ~~lViDEah~~~ 210 (530)
.++||||+|.++
T Consensus 199 ~~~ivDEvDs~L 210 (266)
T PF07517_consen 199 DFAIVDEVDSIL 210 (266)
T ss_dssp SEEEECTHHHHT
T ss_pred CEEEEeccceEE
Confidence 999999999874
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.92 E-value=1.8e-10 Score=119.52 Aligned_cols=156 Identities=22% Similarity=0.266 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHCCC----CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 34 CLDPRLKVALQNMGI----SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~----~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
.+.|....+|..--| ....|.|.+.+..+.. ...++++-+|||+|||.+|.+.++..+... ++.+++|++|
T Consensus 907 ~l~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~---td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap 981 (1230)
T KOG0952|consen 907 DLRPLPSSALKNVVFEALYKYFNPIQTQIFHCLYH---TDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAP 981 (1230)
T ss_pred ccCCCcchhhccccHHHhhcccCCccceEEEEEee---cchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcC
Confidence 344555555554333 2456677765433222 356799999999999999998888776654 4579999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhc
Q 009641 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (530)
Q Consensus 110 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~ 189 (530)
..+|+..-.+.+.......|+++.-..|+...+... ...++++|+||+++....++
T Consensus 982 ~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~~------------------------v~~~~~~ittpek~dgi~Rs 1037 (1230)
T KOG0952|consen 982 DKALVKERSDDWSKRDELPGIKVIELTGDVTPDVKA------------------------VREADIVITTPEKWDGISRS 1037 (1230)
T ss_pred CchhhcccccchhhhcccCCceeEeccCccCCChhh------------------------eecCceEEcccccccCcccc
Confidence 999999888877776555588898888887655221 13469999999999888876
Q ss_pred CCCC-CCCCccEEEEechhHhhhHhhhhHHH
Q 009641 190 TRGF-TLEHLCYLVVDETDRLLREAYQAWLP 219 (530)
Q Consensus 190 ~~~~-~~~~~~~lViDEah~~~~~~~~~~~~ 219 (530)
+... -+.+++.+|+||.|++. .+++..++
T Consensus 1038 w~~r~~v~~v~~iv~de~hllg-~~rgPVle 1067 (1230)
T KOG0952|consen 1038 WQTRKYVQSVSLIVLDEIHLLG-EDRGPVLE 1067 (1230)
T ss_pred ccchhhhccccceeeccccccc-CCCcceEE
Confidence 5443 46789999999999763 33443333
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.62 E-value=4.5e-07 Score=96.81 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=40.5
Q ss_pred CccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhc
Q 009641 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (530)
Q Consensus 385 ~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR 428 (530)
..+.+++-+++.+|.|.|++=++.-+....|...-.|.+||+.|
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr 544 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLR 544 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhcccee
Confidence 56789999999999999999888888888888899999999999
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.61 E-value=1.1e-07 Score=88.36 Aligned_cols=69 Identities=26% Similarity=0.310 Sum_probs=48.5
Q ss_pred ccchhhHHHHHHhcCCCCCCCc-EEEECCCCchHHHHHHHHHHHHhh-----hcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLS-----NRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~-~li~apTGsGKT~~~~~~~l~~l~-----~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
++++.|.+|+..++. ... .+|+||+|+|||.+... ++..+. .....+.++|+++|+..-++++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 468899999887764 455 89999999999975443 444441 1123566899999999999999998887
No 174
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.57 E-value=1.5e-07 Score=81.78 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=73.2
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHhcCC-CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec--ccccCCCCCC--C
Q 009641 330 LGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMTRGMDVEG--V 404 (530)
Q Consensus 330 ~~~~~~iVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~--~~~~GiDip~--~ 404 (530)
..++++|||++|....+.+.+.+..... .++.+..- ....+..+++.|++++..||+++. .+++|||+|+ +
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 3458999999999999999998876431 11233222 355688999999999999999998 9999999996 7
Q ss_pred CEEEEccCCC----Ch--------------------------hHHHHHHhhhhcCCCCccEEEEeec
Q 009641 405 NNVVNYDKPA----YI--------------------------KTYIHRAGRTARAGQLGRCFTLLHK 441 (530)
Q Consensus 405 ~~VI~~~~p~----s~--------------------------~~y~Qr~GR~gR~g~~g~~i~~~~~ 441 (530)
+.||...+|. ++ ....|.+||+-|...+-.+++++++
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 7899988873 11 1224999999998766444445544
No 175
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.54 E-value=5.8e-06 Score=83.91 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=89.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCC---------------CcceEEEccccCCHHHHHHHHHHHhcC--C-ccEEEEecc
Q 009641 333 EKCIVFTSSVESTHRLCTLLNHFGE---------------LRIKIKEYSGLQRQSVRSKTLKAFREG--K-IQVLVSSDA 394 (530)
Q Consensus 333 ~~~iVf~~s~~~~~~l~~~L~~~~~---------------~~~~v~~~h~~~~~~~R~~~~~~f~~g--~-~~iLVaT~~ 394 (530)
.++|||..+......+.+.|.+..- .+.....+.|..+..+|++.+++|.+- - .-+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 5899999998888888888865310 112334567888999999999999853 2 346789999
Q ss_pred cccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 395 ~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
..-||++-..+-+|.||.-+++---.|.+-|+.|.|+..-|++|-.--|
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 9999999999999999999999999999999999999988888755443
No 176
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.38 E-value=1.2e-06 Score=90.53 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=100.4
Q ss_pred HCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC--------------------------
Q 009641 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------------------------- 98 (530)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~-------------------------- 98 (530)
.|.| +|++.|..-+..++..+....++++..|||+|||++.+-..+.+....+
T Consensus 17 ~fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 4677 8999999999888887777899999999999999987766665543211
Q ss_pred ------------CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCc--hH-------------HHHHHHhhc
Q 009641 99 ------------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS--IA-------------DEISELIKR 151 (530)
Q Consensus 99 ------------~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~--~~-------------~~~~~~~~~ 151 (530)
...++++|-+-|..-..|+.+++++..-. ++..++.+... +. .......+.
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~ 173 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKS 173 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccc
Confidence 01345667777777788899999886543 22222211100 00 011111000
Q ss_pred Cc---------------cc-------------cCccCCchhHHHhhcCCCcEEEeCChHHHHHHhc-CCCCCCCCccEEE
Q 009641 152 PK---------------LE-------------AGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTLEHLCYLV 202 (530)
Q Consensus 152 ~~---------------~~-------------~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~-~~~~~~~~~~~lV 202 (530)
.. .. ......|....+.+.+.+||+++-+..|++-.-+ ...+++. =..||
T Consensus 174 ~~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lk-nsIVI 252 (945)
T KOG1132|consen 174 RSCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLK-NSIVI 252 (945)
T ss_pred ccccccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhcccccccc-ccEEE
Confidence 00 00 0011223334567778899999999888765433 2234443 46999
Q ss_pred EechhHhh
Q 009641 203 VDETDRLL 210 (530)
Q Consensus 203 iDEah~~~ 210 (530)
|||||.|.
T Consensus 253 fDEAHNiE 260 (945)
T KOG1132|consen 253 FDEAHNIE 260 (945)
T ss_pred EeccccHH
Confidence 99999873
No 177
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.32 E-value=7.3e-06 Score=87.62 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=38.6
Q ss_pred CCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHH
Q 009641 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221 (530)
Q Consensus 171 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 221 (530)
....|+++||..+..-+.. +.++++.+..|||||||++....-...+-.+
T Consensus 6 ~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rl 55 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRL 55 (814)
T ss_pred hcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHH
Confidence 3458999999999888776 5688999999999999998654433333333
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.24 E-value=6.1e-06 Score=82.58 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=65.7
Q ss_pred HHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHH
Q 009641 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (530)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l 121 (530)
.+...|+.+++.-|..|+.+++. ..-.||++|+|+|||.+....+++.... ....+||.+|+..-++|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~---~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ---HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh---cCCceEEEcccchhHHHHHHHH
Confidence 45567889999999999888764 5668999999999999876655544444 3347999999999999999998
Q ss_pred HHhccccCceEEEee
Q 009641 122 AAIAPAVGLSVGLAV 136 (530)
Q Consensus 122 ~~~~~~~~~~v~~~~ 136 (530)
.+. |++|.-+.
T Consensus 475 h~t----gLKVvRl~ 485 (935)
T KOG1802|consen 475 HKT----GLKVVRLC 485 (935)
T ss_pred Hhc----CceEeeee
Confidence 875 56665433
No 179
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.20 E-value=1.3e-05 Score=83.92 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=84.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCC-cc-EEEEecccccCCCCCCCCEEEEcc
Q 009641 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQ-VLVSSDAMTRGMDVEGVNNVVNYD 411 (530)
Q Consensus 334 ~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~-~~-iLVaT~~~~~GiDip~~~~VI~~~ 411 (530)
+++||+.-...+..+...|...+ +....+.|.|+...|.+.+..|..+. .. .+++..+...|+++..+.+|+..|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~---~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d 617 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKG---FVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMD 617 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcc---cccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhc
Confidence 78888888887777777776444 67778899999999999999999543 22 357778889999999999999999
Q ss_pred CCCChhHHHHHHhhhhcCCCCccEEE
Q 009641 412 KPAYIKTYIHRAGRTARAGQLGRCFT 437 (530)
Q Consensus 412 ~p~s~~~y~Qr~GR~gR~g~~g~~i~ 437 (530)
+-+++..--|.+-|+.|.|+.-.+.+
T Consensus 618 ~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 618 PWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhcChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999998855444
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.16 E-value=6e-06 Score=73.87 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=44.8
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (530)
+|++-|++|+..++.. ..+-+++.+|.|+|||.+. ..+...+.. .+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l-~~~~~~~~~---~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS--GDRVSVLQGPAGTGKTTLL-KALAEALEA---AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHC--TCSEEEEEESTTSTHHHHH-HHHHHHHHH---TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc--CCeEEEEEECCCCCHHHHH-HHHHHHHHh---CCCeEEEECCcHHHHHHHHHh
Confidence 4788999999887641 1234778999999999753 445555555 346899999999887765554
No 181
>PF13245 AAA_19: Part of AAA domain
Probab=98.13 E-value=1.2e-05 Score=59.27 Aligned_cols=52 Identities=33% Similarity=0.461 Sum_probs=38.6
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l 121 (530)
.-++|.+|+|||||.+.+-.+...+......+.++++++||+..++++.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4466699999999977665555555322112568999999999999888887
No 182
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.09 E-value=5.5e-06 Score=82.50 Aligned_cols=67 Identities=25% Similarity=0.240 Sum_probs=51.6
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHH
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~ 122 (530)
+.+.+-|+.|+...+. ...-.+++||+|+|||.+....+.+.+.. +.++||.+||..-++.+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~----~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQ----KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHc----CCeEEEEcCchHHHHHHHHHhc
Confidence 4788899999776554 22448899999999999877655555554 3489999999999888888644
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.07 E-value=3.6e-06 Score=74.55 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=40.6
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
+..++.|..+++.+. ..+-+++.||.|||||+.++..+++.+..+. ..+++|.-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~--~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGE--YDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS---SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCC--CcEEEEEecCCCC
Confidence 456889999988876 3567999999999999999999999888743 3367777787653
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.05 E-value=5.2e-05 Score=67.81 Aligned_cols=122 Identities=21% Similarity=0.286 Sum_probs=79.2
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
.++ .+|+.|.+...+.+.+ ..+.|.+.++.+|.|||.+ ++|++..+..++ ..-+.+++|. +|..|..+.++..+
T Consensus 20 ~~i-liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg--~~LvrviVpk-~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNI-LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSV-IVPMLALALADG--SRLVRVIVPK-ALLEQMRQMLRSRL 93 (229)
T ss_pred cCc-eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccch-HHHHHHHHHcCC--CcEEEEEcCH-HHHHHHHHHHHHHH
Confidence 365 8999999998888765 3678999999999999987 577877777643 2356777785 89999999888754
Q ss_pred ccc-CceEEEee--cCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHH
Q 009641 126 PAV-GLSVGLAV--GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (530)
Q Consensus 126 ~~~-~~~v~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~ 186 (530)
... +-++..+. -....+...... .....+.......|+++||+.++.+
T Consensus 94 g~l~~r~i~~lpFsR~~~~~~~~~~~-------------~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 94 GGLLNRRIYHLPFSRSTPLTPETLEK-------------IRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHhCCeeEEecccCCCCCCHHHHHH-------------HHHHHHHHHHcCCEEEeChHHHHHH
Confidence 332 33333221 122221111000 0112233344568999999988664
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.04 E-value=3.5e-05 Score=81.35 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=52.8
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
..+++.|..|+..++. ....++|.||+|+|||.+....+.+.+.. +.++|+++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~----g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR----GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 3679999999877653 23578999999999998765544444432 348999999999999998888763
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.02 E-value=2e-05 Score=77.62 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=61.3
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhh
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 150 (530)
-++|.|.+|||||++++- ++..+.. ...+.++++++++..|...+.+.+......
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhccc-----------------------
Confidence 478999999999997654 3334311 224558999999999998877777654200
Q ss_pred cCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhh
Q 009641 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (530)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~ 211 (530)
......+..|..+.+.+.. .......+++|||||||++..
T Consensus 58 --------------------~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 --------------------KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --------------------chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhh
Confidence 0012334444444443331 123456799999999999976
No 187
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.99 E-value=0.00024 Score=73.77 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=41.2
Q ss_pred CccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhc
Q 009641 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (530)
Q Consensus 385 ~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR 428 (530)
..+.+.+-.++-+|.|-|+|=+++-.....|..+=+|.+||+.|
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 47789999999999999999889899999999999999999999
No 188
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.97 E-value=3e-05 Score=71.96 Aligned_cols=134 Identities=18% Similarity=0.114 Sum_probs=86.0
Q ss_pred ccchhhHHHHHHhcCC---CC---CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGP---GL---FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~---~~---~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
.+...|.+++-+.... .+ .+..+++-..||.||-....-.+++++..+. .++|.++.+..|..+..+.++.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr---~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR---KRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC---CceEEEECChhhhhHHHHHHHH
Confidence 5788888887654321 11 2356899999999999887777888887743 3799999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCC--CCC------
Q 009641 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--FTL------ 195 (530)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~--~~~------ 195 (530)
++.. .+.+..+..-.. .+ ...-.-.|+.+|+..|...-..... ..+
T Consensus 114 IG~~-~i~v~~l~~~~~-~~------------------------~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 114 IGAD-NIPVHPLNKFKY-GD------------------------IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred hCCC-cccceechhhcc-Cc------------------------CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 8644 233322221000 00 0011237899999888766432111 111
Q ss_pred ---CCccEEEEechhHhhhH
Q 009641 196 ---EHLCYLVVDETDRLLRE 212 (530)
Q Consensus 196 ---~~~~~lViDEah~~~~~ 212 (530)
+.=.+|||||||.+.+.
T Consensus 168 ~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HhcCCCceEEeccchhcCCC
Confidence 12349999999987543
No 189
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.76 E-value=0.00028 Score=74.25 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
+.|.+... -+..++.-|++|+..++. ...-.+|.|=+|+|||.+... ++..|.. .+.++|..+-|..-+
T Consensus 658 ~~p~~~~~----~~~~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~-LIkiL~~---~gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 658 LIPKIKKI----ILLRLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISL-LIKILVA---LGKKVLLTSYTHSAV 726 (1100)
T ss_pred cCchhhHH----HHhhcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHH-HHHHHHH---cCCeEEEEehhhHHH
Confidence 55555554 234788999999776654 345588999999999987544 3444433 345799999998777
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCC
Q 009641 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
+.+.-.++.+ ++.+.-+-......+..+++.... ......-+.....-..+.|+.+|---+-. ..|.
T Consensus 727 DNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~----~~s~ks~~~l~~~~~~~~IVa~TClgi~~-----plf~ 793 (1100)
T KOG1805|consen 727 DNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTN----ETSEKSYADLKKFLDQTSIVACTCLGINH-----PLFV 793 (1100)
T ss_pred HHHHHHHhcc----CcceeecCCccccchHHHHHhccc----ccchhhHHHHHHHhCCCcEEEEEccCCCc-----hhhh
Confidence 6666666554 444443344445555555544211 11111112223334567888888432221 2345
Q ss_pred CCCccEEEEechhHhh
Q 009641 195 LEHLCYLVVDETDRLL 210 (530)
Q Consensus 195 ~~~~~~lViDEah~~~ 210 (530)
.+.|+++|||||-.+.
T Consensus 794 ~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQIL 809 (1100)
T ss_pred ccccCEEEEccccccc
Confidence 6679999999999763
No 190
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.75 E-value=0.00017 Score=60.35 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHhcCC-ccEEEEecccccCCCCCC--CCEEEEccCC
Q 009641 368 LQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG--VNNVVNYDKP 413 (530)
Q Consensus 368 ~~~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiDip~--~~~VI~~~~p 413 (530)
+....+...+++.|++.. ..||+++..+++|||+|+ ++.||...+|
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 345556789999998764 379999988999999997 6788888876
No 191
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.73 E-value=0.00017 Score=70.63 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=55.6
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
|.|...+|-|-+=+-++-..+-.+..+++.+|+|+|||.+.+-.++..-.+.+....+.++.+-|..=++....+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 6778889999887766555555567899999999999998666555554444445557788777765555555555544
No 192
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.73 E-value=9.8e-05 Score=71.83 Aligned_cols=70 Identities=26% Similarity=0.223 Sum_probs=54.5
Q ss_pred cchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
+++-|.+++.. ...+++|.|+.|||||.+.+.-++..+.....+..++|++++|+..+.++.+.+...+.
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 57789887543 36789999999999999877766666666545667899999999999999998888644
No 193
>PRK10536 hypothetical protein; Provisional
Probab=97.69 E-value=8.8e-05 Score=67.72 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=42.2
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
.++...+..|...+..+. ....+++.||+|+|||+.+...+++.+..+. -.+++|.=|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~----~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIE----SKQLIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCCCCC
Confidence 355567778888766543 3567899999999999988887777765532 234555556654
No 194
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.63 E-value=0.00025 Score=59.45 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCc---cEEEEecc--cccCCCCCC--CCEEEEccCCCC----h------------------------
Q 009641 372 SVRSKTLKAFREGKI---QVLVSSDA--MTRGMDVEG--VNNVVNYDKPAY----I------------------------ 416 (530)
Q Consensus 372 ~~R~~~~~~f~~g~~---~iLVaT~~--~~~GiDip~--~~~VI~~~~p~s----~------------------------ 416 (530)
.+..++++.|++... .||+++.- +++|||+|+ ++.||..++|.. +
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345788999987544 69988877 999999997 678998887721 1
Q ss_pred ---hHHHHHHhhhhcCCCCccEEEEee
Q 009641 417 ---KTYIHRAGRTARAGQLGRCFTLLH 440 (530)
Q Consensus 417 ---~~y~Qr~GR~gR~g~~g~~i~~~~ 440 (530)
....|.+||+-|...+--++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEe
Confidence 123488999999866644454544
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.49 E-value=0.00077 Score=72.51 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=49.3
Q ss_pred HHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHH
Q 009641 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (530)
Q Consensus 39 i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (530)
+...-...++ .+++-|++|+..+. .++-+++.+++|+|||.+. -.++..+.... +...+++++||-.-+..+
T Consensus 313 i~~~~~~~~~-~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 313 IWEVEKKLRK-GLSEEQKQALDTAI----QHKVVILTGGPGTGKTTIT-RAIIELAEELG-GLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-CCceEEEEeCchHHHHHH
Confidence 3333344676 89999999988764 3567999999999999754 33444444321 114688889998776544
No 196
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.46 E-value=0.00069 Score=70.88 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=47.7
Q ss_pred chhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhh-cCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~-~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.++|+.|+...+ .++-++|.+++|+|||.+... ++..+.. ...+..++++.+||..-|..+.+.+...
T Consensus 154 ~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 154 VDWQKVAAAVAL----TRRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 589999975544 367799999999999986433 3333332 1123357888899999888877776654
No 197
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.41 E-value=0.00052 Score=74.39 Aligned_cols=72 Identities=21% Similarity=0.111 Sum_probs=55.9
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
..|++-|++|+.+ ....++|.|..|||||.+...-+...+.....+..++|+++.|+..|.++.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4689999998543 24679999999999999866555555544344556899999999999999999988753
No 198
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.40 E-value=0.002 Score=69.62 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=45.8
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHH
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (530)
.++ .+++-|++|+..++. .++-+++.+++|+|||... -.+...+.. .+.++++++||--.+..+
T Consensus 349 ~~~-~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll-~~i~~~~~~---~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 349 QHY-RLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTML-KAAREAWEA---AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred ccC-CCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHH-HHHHHHHHh---CCCeEEEEeCcHHHHHHH
Confidence 354 799999999887754 2356899999999999753 334444443 355799999997655443
No 199
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.40 E-value=0.00091 Score=69.84 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=46.6
Q ss_pred hhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC--CcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~--~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
++|+.|+..++. ++-++|.|++|+|||.+.. .++..+..... ...++++.+||-.-+..+.+.+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 789988766553 6779999999999998643 34444432211 1257999999988887777766554
No 200
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.38 E-value=0.00051 Score=74.41 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=55.7
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
..|++-|++|+.. ....++|.|..|||||.+...-+...+.....+..++|+|+-|+..|.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3689999998543 24579999999999999866555544443344556899999999999999999988753
No 201
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.31 E-value=0.0021 Score=70.59 Aligned_cols=64 Identities=11% Similarity=-0.081 Sum_probs=46.1
Q ss_pred HCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
+.|+ .+++-|++|+..++. .+.-+++.++.|+|||.+ +-.+...+.. .+.+++.++||-.-+..
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAEN 405 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHHH
Confidence 3565 899999999887764 123478999999999985 3445554444 35579999999765543
No 202
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.29 E-value=0.0014 Score=69.88 Aligned_cols=82 Identities=18% Similarity=0.085 Sum_probs=60.6
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
..+++-|++|+. . ...+++|.|..|||||.+.+.-+...+........++|+++.|+..|..+.+.+.......
T Consensus 195 ~~L~~~Q~~av~---~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVV---N---GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHh---C---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 579999999853 2 2356899999999999986655544444444455689999999999999999888766543
Q ss_pred CceEEEee
Q 009641 129 GLSVGLAV 136 (530)
Q Consensus 129 ~~~v~~~~ 136 (530)
++.+.+++
T Consensus 269 ~v~v~TFH 276 (684)
T PRK11054 269 DITARTFH 276 (684)
T ss_pred CcEEEeHH
Confidence 55665544
No 203
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.28 E-value=0.00068 Score=72.58 Aligned_cols=82 Identities=20% Similarity=0.099 Sum_probs=60.3
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc--
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA-- 127 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~-- 127 (530)
.+++-|++|+.. ....++|.|+.|||||.+...-+...+.....+..++|+++.|+..|.++.+.+..+...
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~~ 75 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRKE 75 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCccc
Confidence 478999998543 245789999999999998766565555443445568999999999999999999876542
Q ss_pred -cCceEEEeec
Q 009641 128 -VGLSVGLAVG 137 (530)
Q Consensus 128 -~~~~v~~~~g 137 (530)
.++.++++|+
T Consensus 76 ~~~v~i~TfHS 86 (672)
T PRK10919 76 ARGLMISTFHT 86 (672)
T ss_pred ccCcEEEcHHH
Confidence 2355555544
No 204
>PRK06526 transposase; Provisional
Probab=97.25 E-value=0.0013 Score=61.09 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCc
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~ 101 (530)
+.+++..++..+++++.....|....| +..+.++++.||+|+|||..+...+.+.. . .+
T Consensus 68 ~~le~fd~~~~~~~~~~~~~~l~~~~f-----------------i~~~~nlll~Gp~GtGKThLa~al~~~a~-~---~g 126 (254)
T PRK06526 68 KSLEEFDFDHQRSLKRDTIAHLGTLDF-----------------VTGKENVVFLGPPGTGKTHLAIGLGIRAC-Q---AG 126 (254)
T ss_pred CChhhccCccCCCcchHHHHHHhcCch-----------------hhcCceEEEEeCCCCchHHHHHHHHHHHH-H---CC
Confidence 445555555555566655555554443 11367899999999999987655443333 2 23
Q ss_pred ccEEEEcCcHHHHHH
Q 009641 102 LRALVVLPTRDLALQ 116 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q 116 (530)
.++++... ..++.+
T Consensus 127 ~~v~f~t~-~~l~~~ 140 (254)
T PRK06526 127 HRVLFATA-AQWVAR 140 (254)
T ss_pred CchhhhhH-HHHHHH
Confidence 35555433 344443
No 205
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0038 Score=61.55 Aligned_cols=60 Identities=23% Similarity=0.205 Sum_probs=32.8
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc--CcHHHHHHHHHHHHHhccccCceE
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSV 132 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~--Pt~~L~~Q~~~~l~~~~~~~~~~v 132 (530)
+.+++.+|||+|||.+..-.+..........+.++.+++ +.|.-+..+ ++.++..+++++
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPV 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcce
Confidence 568899999999998865544332222111334555554 334444332 455544445543
No 206
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.19 E-value=0.0048 Score=68.31 Aligned_cols=75 Identities=15% Similarity=0.024 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
.++.........++ .+++-|++|+..+.. .++-+++.|+.|+|||.+ +-++.+.+.. .+.+++.++||-.-+
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~-l~~~~~~~e~---~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTM-MKAAREAWEA---AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEEcCcHHHH
Confidence 44555555444455 899999999887642 345689999999999975 3445555544 355799999997655
Q ss_pred HHH
Q 009641 115 LQV 117 (530)
Q Consensus 115 ~Q~ 117 (530)
..+
T Consensus 439 ~~L 441 (1102)
T PRK13826 439 EGL 441 (1102)
T ss_pred HHH
Confidence 443
No 207
>PRK08181 transposase; Validated
Probab=97.11 E-value=0.0033 Score=58.89 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=28.3
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (530)
.++++++.||+|+|||..+...+. .+.. .+.+++++ +..+|+.++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~-~a~~---~g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGL-ALIE---NGWRVLFT-RTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHH-HHHH---cCCceeee-eHHHHHHHH
Confidence 467899999999999976544333 3332 23345554 445666554
No 208
>PRK04296 thymidine kinase; Provisional
Probab=97.05 E-value=0.001 Score=59.15 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=24.9
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
|.-.++.+|+|+|||..++- ++.++.. .+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~-~~~~~~~---~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQ-RAYNYEE---RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHH-HHHHHHH---cCCeEEEEec
Confidence 34578899999999976544 4444433 2457888866
No 209
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.03 E-value=0.0086 Score=49.59 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=13.6
Q ss_pred CCcEEEECCCCchHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~ 88 (530)
++.+++.||+|+|||.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 45689999999999986544
No 210
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.98 E-value=0.0022 Score=59.27 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=18.3
Q ss_pred CCcEEEECCCCchHHHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l 91 (530)
..+.++.||+|+|||-++.+.+-
T Consensus 57 lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHH
Confidence 35799999999999988665433
No 211
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0034 Score=58.42 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=35.1
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~ 122 (530)
++.++++.||+|+|||..+...+.+.+ . .| ..++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~---~g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K---AG-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H---cC-CeEEEEEHHHHHHHHHHHHh
Confidence 578999999999999987655444444 3 23 35566677788877665554
No 212
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.92 E-value=0.0027 Score=68.53 Aligned_cols=82 Identities=21% Similarity=0.132 Sum_probs=59.5
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc--
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA-- 127 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~-- 127 (530)
.+++-|++|+.. ...+++|.|+.|||||.+.+.-+...+.....+..++|+|+.|+..+.++.+.+.+....
T Consensus 1 ~Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~~ 74 (664)
T TIGR01074 1 KLNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKGE 74 (664)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCccc
Confidence 378899998543 246899999999999998766666555443334568999999999999999998876542
Q ss_pred -cCceEEEeec
Q 009641 128 -VGLSVGLAVG 137 (530)
Q Consensus 128 -~~~~v~~~~g 137 (530)
.++.+.++++
T Consensus 75 ~~~v~v~TfHs 85 (664)
T TIGR01074 75 ARGLTISTFHT 85 (664)
T ss_pred cCCeEEEeHHH
Confidence 2355554443
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.90 E-value=0.0021 Score=63.61 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=43.3
Q ss_pred ccchhhHHHHHHhcCCC--CCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~--~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
+|++-|+.+++.++..+ ..+.++++.||-|+|||+.+ -++...... .+..+++++||-.-|..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~--~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRS--RGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhcc--ccceEEEecchHHHHHh
Confidence 46788999988775443 34678999999999999753 233333322 34579999999665543
No 214
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.76 E-value=0.0042 Score=56.95 Aligned_cols=87 Identities=22% Similarity=0.263 Sum_probs=62.1
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCC-chHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (530)
+.+.+|||+.+---|.++.+.++.+-.. +..|+-+..-. .+.++...+.+ ....|.||
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~--------------------~~~~i~vG 183 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKK--------------------TRVHIAVG 183 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHh--------------------CCceEEEe
Confidence 4578999999877788888888877311 23333334333 45555443321 35699999
Q ss_pred CChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 179 TPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
||+|+..++.. +.+.++++.+||||--|.
T Consensus 184 TP~Rl~kLle~-~~L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 184 TPGRLSKLLEN-GALSLSNLKRIVLDWSYL 212 (252)
T ss_pred ChHHHHHHHHc-CCCCcccCeEEEEcCCcc
Confidence 99999999987 678899999999997663
No 215
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.73 E-value=0.00015 Score=75.27 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=59.5
Q ss_pred CCcHHHHHHHHHh--cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhc---CCccEEEE
Q 009641 317 KLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE---GKIQVLVS 391 (530)
Q Consensus 317 ~~k~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~---g~~~iLVa 391 (530)
..|...|...++. ..+++++||..-+...+.+..++...+ ....+.|..+..+|..++..|.. ...-.|.+
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~----~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cflls 689 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG----KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLS 689 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC----cceeccCCccchhhhhhccccCCCCccceEEEee
Confidence 4455555555553 357899999999888888888887543 56788999999999999999983 35667889
Q ss_pred ecccccC
Q 009641 392 SDAMTRG 398 (530)
Q Consensus 392 T~~~~~G 398 (530)
|.+.+.|
T Consensus 690 tra~g~g 696 (696)
T KOG0383|consen 690 TRAGGLG 696 (696)
T ss_pred cccccCC
Confidence 9876654
No 216
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.68 E-value=0.0046 Score=67.31 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=60.1
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc-
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~- 127 (530)
..|+|-|++|+.. ....++|.|..|||||.+...-+...+........++|+++-|+..|.++.+.+.+++..
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~ 76 (726)
T TIGR01073 3 AHLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGPV 76 (726)
T ss_pred cccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhccc
Confidence 4689999998543 246799999999999998666555555443344458999999999999999998877543
Q ss_pred -cCceEEEee
Q 009641 128 -VGLSVGLAV 136 (530)
Q Consensus 128 -~~~~v~~~~ 136 (530)
.++.+.+++
T Consensus 77 ~~~~~i~TFH 86 (726)
T TIGR01073 77 AEDIWISTFH 86 (726)
T ss_pred cCCcEEEcHH
Confidence 134455443
No 217
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.60 E-value=0.025 Score=51.56 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=29.7
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~ 122 (530)
..+++.||+|+|||-. +..+...+.... ++.+++|+... +........++
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~-~~~~v~y~~~~-~f~~~~~~~~~ 84 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQH-PGKRVVYLSAE-EFIREFADALR 84 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHC-TTS-EEEEEHH-HHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhcc-ccccceeecHH-HHHHHHHHHHH
Confidence 3489999999999984 344555444422 34567776543 55544444433
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.59 E-value=0.015 Score=54.57 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=27.5
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
+.++++.||+|+|||..+.. +...+... .+..++++. ..++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~a-ia~~l~~~--~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA-AANELMRK--KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHhhh--cCceEEEEE-HHHHHHH
Confidence 56799999999999975433 44444432 134566655 3455444
No 219
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.56 E-value=0.006 Score=66.45 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=78.7
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhc--------------CCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEE
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR--------------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~--------------~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~ 133 (530)
.|++++..--.|+|||.+-+...+..+-.. ......+|||+|. ++..||..++...+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 357789999999999988655444332110 1122359999997 88889999999988764 7888
Q ss_pred EeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCC-------------CCCC----
Q 009641 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-------------FTLE---- 196 (530)
Q Consensus 134 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-------------~~~~---- 196 (530)
.+.|-....... +. .--.+|||++|+..|.+-+..... .+..
T Consensus 451 ~Y~Girk~~~~~----------------~~-----el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~ 509 (1394)
T KOG0298|consen 451 LYFGIRKTFWLS----------------PF-----ELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLL 509 (1394)
T ss_pred EEechhhhcccC----------------ch-----hhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchH
Confidence 888854322110 00 113469999999999776543211 1111
Q ss_pred --CccEEEEechhHhhh
Q 009641 197 --HLCYLVVDETDRLLR 211 (530)
Q Consensus 197 --~~~~lViDEah~~~~ 211 (530)
.+--|++|||+.+-.
T Consensus 510 ~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 510 MVNWWRICLDEAQMVES 526 (1394)
T ss_pred HHHHHHHhhhHHHhhcc
Confidence 134689999997643
No 220
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.01 Score=51.47 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=60.4
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCc-eEEEeecCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL-SVGLAVGQSSIADEISE 147 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~-~v~~~~g~~~~~~~~~~ 147 (530)
++-.++.+|++||||.. ++.++......+.++++..|...- ++ +. .+....|.
T Consensus 4 g~l~~i~gpM~SGKT~e----Ll~r~~~~~~~g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~--------- 57 (201)
T COG1435 4 GWLEFIYGPMFSGKTEE----LLRRARRYKEAGMKVLVFKPAIDT---------RY----GVGKVSSRIGL--------- 57 (201)
T ss_pred EEEEEEEccCcCcchHH----HHHHHHHHHHcCCeEEEEeccccc---------cc----ccceeeeccCC---------
Confidence 44568999999999985 333333333356789999986431 00 11 12222221
Q ss_pred HhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhh
Q 009641 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (530)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 224 (530)
....++|-++..+...+.... ... .++.|.||||+-+ +...-..+..+...
T Consensus 58 -----------------------~~~A~~i~~~~~i~~~i~~~~-~~~-~~~~v~IDEaQF~-~~~~v~~l~~lad~ 108 (201)
T COG1435 58 -----------------------SSEAVVIPSDTDIFDEIAALH-EKP-PVDCVLIDEAQFF-DEELVYVLNELADR 108 (201)
T ss_pred -----------------------cccceecCChHHHHHHHHhcc-cCC-CcCEEEEehhHhC-CHHHHHHHHHHHhh
Confidence 123566777777777776522 111 2889999999954 44333444444443
No 221
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.50 E-value=0.0022 Score=65.29 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=72.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCCc----ceEEEccccCCHHHHHHHHHHHh----cCCccEEEEe--cccccCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGELR----IKIKEYSGLQRQSVRSKTLKAFR----EGKIQVLVSS--DAMTRGMD 400 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~~~----~~v~~~h~~~~~~~R~~~~~~f~----~g~~~iLVaT--~~~~~GiD 400 (530)
-++.+++|++|.+....+.+.+.+.|.++ .+...+-..-+ -..+++.|. .|.-.+|+|. .-+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 35899999999999999999888655321 12222222222 345555555 4555677554 57899999
Q ss_pred CCC--CCEEEEccCCCC--------------------------------hhHHHHHHhhhhcCCCCccEEEEeec
Q 009641 401 VEG--VNNVVNYDKPAY--------------------------------IKTYIHRAGRTARAGQLGRCFTLLHK 441 (530)
Q Consensus 401 ip~--~~~VI~~~~p~s--------------------------------~~~y~Qr~GR~gR~g~~g~~i~~~~~ 441 (530)
+.+ ++.||..++|-. ...--|.+|||-|+.++=.++++++.
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 997 788888887721 01223999999999777666666654
No 222
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.50 E-value=0.017 Score=48.59 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.5
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
++.+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999753
No 223
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.48 E-value=0.016 Score=53.96 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=53.8
Q ss_pred HHHHHHhcCCccEEEEecccccCCCCCC--------CCEEEEccCCCChhHHHHHHhhhhcCCCC-ccEEEEeec
Q 009641 376 KTLKAFREGKIQVLVSSDAMTRGMDVEG--------VNNVVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLLHK 441 (530)
Q Consensus 376 ~~~~~f~~g~~~iLVaT~~~~~GiDip~--------~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~-g~~i~~~~~ 441 (530)
...+.|.+|+..|+|.|++.+.||.+.. -++-|...+|++....+|..||+.|.|+. .-.+.++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 5567899999999999999999998874 23566788999999999999999999886 334444443
No 224
>PRK14974 cell division protein FtsY; Provisional
Probab=96.25 E-value=0.055 Score=52.42 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=28.9
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc---HHHHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT---RDLALQVKDVFAA 123 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt---~~L~~Q~~~~l~~ 123 (530)
.-+++.+++|+|||.+....+ ..+.. .+.+++++..- ..-..|+......
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~---~g~~V~li~~Dt~R~~a~eqL~~~a~~ 193 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK---NGFSVVIAAGDTFRAGAIEQLEEHAER 193 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH---cCCeEEEecCCcCcHHHHHHHHHHHHH
Confidence 347789999999998755433 34433 23456665432 3444454444443
No 225
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.19 E-value=0.019 Score=59.16 Aligned_cols=75 Identities=21% Similarity=0.105 Sum_probs=54.0
Q ss_pred hhhHHHHHHhcCC-----CCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc
Q 009641 53 PVQVAVWQETIGP-----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (530)
Q Consensus 53 ~~Q~~a~~~~~~~-----~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 127 (530)
|+|+-.+..++.. ...-+.+++.-|=|.|||......++..+.-.+..+..+++.++++.-|....+.++.+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 5677665555421 11124588888999999987666666555544446678999999999999999998887654
No 226
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.18 E-value=0.026 Score=53.67 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=47.8
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
+|+..-+-.|+-|++.++..- =.-+.+.++-|||||+.++.+.+++....+ ...++||-=|+..+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCcc
Confidence 688777777888877665421 134778999999999999988888877654 344677777886654
No 227
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.18 E-value=0.077 Score=47.01 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=33.5
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
+++.||+|+|||...+-.+...+.. +.+++|++.. +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~----g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR----GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC----CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999998765555555433 4468888654 5566677776665
No 228
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.15 E-value=0.026 Score=50.36 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=32.0
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc-C-cHHHHHHHHHHHHHhccccCceEEEee
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-P-TRDLALQVKDVFAAIAPAVGLSVGLAV 136 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~-P-t~~L~~Q~~~~l~~~~~~~~~~v~~~~ 136 (530)
+++.+|||+|||.+..-.+...... +.++.+++ - .|.=+ .++++.++..+++++....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~----~~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK----GKKVALISADTYRIGA---VEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc----cccceeecCCCCCccH---HHHHHHHHHHhccccchhh
Confidence 6789999999999866655443333 33455554 2 23333 3344444444466655433
No 229
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.036 Score=53.73 Aligned_cols=42 Identities=24% Similarity=0.464 Sum_probs=32.0
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l 91 (530)
.++|||...|..++....-.+-.++.||.|.|||..+...+-
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHH
Confidence 458999999999887533345689999999999986654333
No 230
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.12 E-value=0.027 Score=51.93 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=25.2
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
..+++.+++|+|||..+.. +...+.. .+..++++ +..+|.
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~---~g~~v~~i-t~~~l~ 139 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLL---RGKSVLII-TVADIM 139 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHh---cCCeEEEE-EHHHHH
Confidence 4789999999999986543 4444444 23356555 334443
No 231
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.037 Score=54.19 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=36.9
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCc
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~ 140 (530)
.+..+++.+|||+|||......+....... +..++.+++ +...-.--.+.++.++...++.+........
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~--G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~ 205 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF--GASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGD 205 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCccc
Confidence 356799999999999987665444333221 112444443 2221101233444444445666655544433
No 232
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.03 E-value=0.0097 Score=49.72 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=25.8
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
+..+++.+|+|+|||..... ++..+.. .+..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~---~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGP---PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCC---CCCCEEEECCEEcc
Confidence 46789999999999986433 2322222 11247777766544
No 233
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.96 E-value=0.052 Score=55.18 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=30.8
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~ 122 (530)
..+++.|++|+|||... ..+...+... .++.+++++.+ ..+..++...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-FSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH-HHHHHHHHHHHH
Confidence 45899999999999643 3344444332 23456776665 466655555443
No 234
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.074 Score=51.16 Aligned_cols=43 Identities=23% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCccchhhHHHHHHhcCCCCCC---CcEEEECCCCchHHHHHHHHH
Q 009641 48 ISSLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~~~~ 90 (530)
++.++|+|..+|..+...+..+ +-.++.||.|+||+..+...+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA 47 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALA 47 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 3578999999999877654444 358999999999998655433
No 235
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.92 E-value=0.056 Score=55.33 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=28.6
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (530)
..+++.||+|+|||..... +...+.... .+.+++++ +...+..+....
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~-~~~~v~yi-~~~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKN-PNAKVVYV-TSEKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhC-CCCeEEEE-EHHHHHHHHHHH
Confidence 4589999999999986443 444443321 24456666 444555544333
No 236
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.92 E-value=0.033 Score=54.30 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=50.5
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 147 (530)
++.+.+.||||.|||.+..-.+.......+ +..-+||-+-|--.+ .++.++.+++-+++++.++.....+......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhh--HHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 667889999999999886655554442222 233466666664443 3556777777778999888877666665544
No 237
>CHL00181 cbbX CbbX; Provisional
Probab=95.88 E-value=0.059 Score=51.28 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.3
Q ss_pred CCcEEEECCCCchHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~ 89 (530)
+.++++.||+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999876554
No 238
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.03 Score=54.04 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.1
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
.++|+++|+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 5799999999999976543
No 239
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.82 E-value=0.018 Score=53.40 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=25.4
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhc---CCCcccEEEEcCcHHHH
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLA 114 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~---~~~~~~~lil~Pt~~L~ 114 (530)
.+|.||||+||+-. +.++... ....-.|++|+|++..+
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 67899999999963 3333332 11233699999987654
No 240
>PRK12377 putative replication protein; Provisional
Probab=95.82 E-value=0.075 Score=49.20 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=28.2
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (530)
.++++.||+|+|||..+.. +...+.. .+..+++ ++..+|..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~~---~g~~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLLA---KGRSVIV-VTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHH---cCCCeEE-EEHHHHHHHHHH
Confidence 5799999999999976443 4444443 2334544 455566665443
No 241
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.81 E-value=0.026 Score=53.10 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.6
Q ss_pred CCcEEEECCCCchHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~ 88 (530)
..++++.||+|+|||..+-.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 35799999999999987644
No 242
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.78 E-value=0.061 Score=62.00 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=44.2
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhh-cCCCcccEEEEcCcHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 117 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~-~~~~~~~~lil~Pt~~L~~Q~ 117 (530)
.+++-|++|+..++.. .++-++|.+..|+|||.+.- .++..+.. ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFR-AVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHH-HHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 7999999998877641 24569999999999997632 22332221 112345788899997766544
No 243
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.74 E-value=0.078 Score=56.82 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=26.8
Q ss_pred cchhhHHHHHHhcCCCCCC---CcE-EEECCCCchHHHHHHHHHHHHhh
Q 009641 51 LFPVQVAVWQETIGPGLFE---RDL-CINSPTGSGKTLSYALPIVQTLS 95 (530)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~-li~apTGsGKT~~~~~~~l~~l~ 95 (530)
-|+-|.+.+...+...+.+ .++ +|.|+||+|||.+.-. ++..+.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 3555665555545443332 244 5999999999987544 445543
No 244
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.73 E-value=0.23 Score=42.53 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=23.4
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
+++.||+|+|||......+... .. .+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~---~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT---KGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh---cCCEEEEEECCcc
Confidence 5789999999998654433333 22 2346777765433
No 245
>PRK06893 DNA replication initiation factor; Validated
Probab=95.72 E-value=0.063 Score=49.36 Aligned_cols=36 Identities=14% Similarity=-0.005 Sum_probs=22.1
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
..+++.||+|+|||..... +...+... +.+++|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~~a-i~~~~~~~---~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKA-VSNHYLLN---QRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEeeH
Confidence 4579999999999975444 33333321 335665543
No 246
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.72 E-value=0.072 Score=53.73 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=26.8
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
..+++.||+|+|||.... .+...+... ..+.+++++.. ..+..+
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~-~~~~~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN-NPNAKVVYVSS-EKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh-CCCCcEEEEEH-HHHHHH
Confidence 458899999999998643 344444432 23456777643 344433
No 247
>PRK08727 hypothetical protein; Validated
Probab=95.70 E-value=0.055 Score=49.87 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=22.7
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
..+++.||+|+|||..... +...+.. .+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~---~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQ---AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHH---cCCcEEEEe
Confidence 4599999999999975443 3333333 234677764
No 248
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.69 E-value=0.056 Score=58.25 Aligned_cols=79 Identities=13% Similarity=0.234 Sum_probs=67.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-cccCCCCCCCCEEE
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiDip~~~~VI 408 (530)
.+.+++|.+||+..|...++.+.... ..++.+..+||+++..+|...++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 46689999999999999988887643 33588999999999999999999999999999999974 55567788888777
Q ss_pred E
Q 009641 409 N 409 (530)
Q Consensus 409 ~ 409 (530)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 5
No 249
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.68 E-value=0.029 Score=64.57 Aligned_cols=69 Identities=22% Similarity=0.181 Sum_probs=53.9
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
++|+-|.+|+.. .+++++|.|.-|||||.+.+--++..+..+ ..-.++++||=|+..+.++.+.+++.+
T Consensus 1 ~~t~~Q~~ai~~------~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 1 QWTDEQWQAIYT------RGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHHHH
Confidence 368899998642 478999999999999998777677666544 233469999999999988888777643
No 250
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.65 E-value=0.087 Score=61.59 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=44.9
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhh-cCCCcccEEEEcCcHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 117 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~-~~~~~~~~lil~Pt~~L~~Q~ 117 (530)
.+++-|++|+..++.. ..+-++|.+..|+|||... -.++..+.. ....+.+++.++||-.-+.++
T Consensus 967 ~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 7999999998887641 1356899999999999753 334444332 112345788899997766543
No 251
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.65 E-value=0.062 Score=50.91 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=34.1
Q ss_pred cCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 63 ~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
+..+..|.-+++.|++|+|||......+.+.... .+.+++|++-- .-..++...+..
T Consensus 24 ~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEcc-cCHHHHHHHHHH
Confidence 3344567789999999999997554444443332 24468888632 223444444433
No 252
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.64 E-value=0.19 Score=52.56 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=51.6
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 127 (530)
.|.|.=.+-++++++.+ +.+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.++.+.+...+..
T Consensus 169 ~~~~~~~~~id~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f---~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 169 APSPRTLREIDRIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISF---LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred CCChhhHHHHHHHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHh---cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 44555555566666544 24557778999999998766554433321 2468999999999999999888877653
No 253
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=0.022 Score=57.40 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=62.6
Q ss_pred EECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc--cccCceEEEeecCCchHHHHHHHhhc
Q 009641 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA--PAVGLSVGLAVGQSSIADEISELIKR 151 (530)
Q Consensus 74 i~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~--~~~~~~v~~~~g~~~~~~~~~~~~~~ 151 (530)
..++||||||++..-.+++...++ ...-|+.|......+-....+..-. +++ ++-....++..+.-
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg---yr~flffvnq~nilekt~~nftd~~s~kyl-f~e~i~~~d~~i~i-------- 69 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG---YRNFLFFVNQANILEKTKLNFTDSVSSKYL-FSENININDENIEI-------- 69 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc---hhhEEEEecchhHHHHHHhhcccchhhhHh-hhhhhhcCCceeee--------
Confidence 467999999998777777777664 3367888877665543332222100 000 00001111111100
Q ss_pred CccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCC--C---CCCCcc-EEEEechhHhhh
Q 009641 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--F---TLEHLC-YLVVDETDRLLR 211 (530)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~--~---~~~~~~-~lViDEah~~~~ 211 (530)
.....+ ........|+.+|-+.|...+.+.+. . ++.+.. +++-|||||+-.
T Consensus 70 ---kkvn~f------sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 70 ---KKVNNF------SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred ---eeeccc------CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 000000 01234568999999999887755332 2 233344 456799999843
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.55 E-value=0.029 Score=49.21 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=27.4
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (530)
.++++++.||+|+|||..+...+.+ +.. .+..++++ +..+|..++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~-~~~---~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANE-AIR---KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHH-HHH---TT--EEEE-EHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHH-hcc---CCcceeEe-ecCceeccc
Confidence 4688999999999999876554433 433 23356554 455666543
No 255
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.52 E-value=0.037 Score=49.57 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.7
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
.+++++||+|+|||..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 469999999999997544
No 256
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.51 E-value=0.052 Score=58.38 Aligned_cols=75 Identities=12% Similarity=0.281 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcC----CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEeccc
Q 009641 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (530)
Q Consensus 320 ~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~----~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~ 395 (530)
+-.+..+.-...+.++++.+||...+.+.++.|++.. .....+. |||.|+..++.+++++|.+|+.+|||+|+.+
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3445555555667899999999999999988887653 1223333 9999999999999999999999999999854
No 257
>PRK05642 DNA replication initiation factor; Validated
Probab=95.45 E-value=0.092 Score=48.44 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=22.7
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
..+++.||+|+|||.... .+...+.. .+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~---~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ---RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh---CCCcEEEeeH
Confidence 468899999999997533 23333332 2346666553
No 258
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.41 E-value=0.076 Score=49.91 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.5
Q ss_pred CcEEEECCCCchHHHH
Q 009641 70 RDLCINSPTGSGKTLS 85 (530)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (530)
.++++.|+||-|||..
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 6899999999999974
No 259
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.35 E-value=0.12 Score=47.61 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=23.2
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
+..+++.||+|+|||..... +...+.. .+.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a-~~~~~~~---~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA-ACAELSQ---RGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHh---CCCeEEEEEH
Confidence 45799999999999975443 3333332 2345666543
No 260
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.35 E-value=0.0069 Score=52.43 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=26.1
Q ss_pred EEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 73 li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
++.|+=|-|||.+..+.+...+..+ ..+++|.+|+.+-++.+.+.+..-++..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~---~~~I~vtAP~~~~~~~lf~~~~~~l~~~ 53 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG---KIRILVTAPSPENVQTLFEFAEKGLKAL 53 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------EEEE-SS--S-HHHHHCC-------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc---CceEEEecCCHHHHHHHHHHHHhhcccc
Confidence 5788999999987666544333322 2469999999998777776665544433
No 261
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.21 Score=48.95 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=23.0
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+.+.+.+|||+|||......+.. +.. .+.++.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~---~GkkVglI~ 276 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG---KKKTVGFIT 276 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH---cCCcEEEEe
Confidence 56889999999999876655443 332 233555554
No 262
>PHA02533 17 large terminase protein; Provisional
Probab=95.30 E-value=0.14 Score=53.00 Aligned_cols=71 Identities=14% Similarity=0.015 Sum_probs=51.6
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
.|.|+|+..+..+. .++-.++..+=..|||.+....++...... ++..+++++|+..-|..+.+.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68899999876542 244557778888999998775555444332 345899999999999988888876543
No 263
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.29 E-value=0.11 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=18.2
Q ss_pred CCcEEEECCCCchHHHHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQ 92 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~ 92 (530)
++.+++.+|||+|||.+....+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999876554433
No 264
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.29 E-value=0.05 Score=52.48 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=42.4
Q ss_pred HHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 41 ~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
+.|.+.|+ +++.|.+.+..++. .++++++.|+||||||.. +-.++..+... .+..+++++-.+.+|
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVR---AHRNILVIGGTGSGKTTL-VNAIINEMVIQ-DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHhhhhc-CCCceEEEEcCCCcc
Confidence 33445564 56777777665554 478999999999999953 44444443221 133467777777776
No 265
>PRK08116 hypothetical protein; Validated
Probab=95.28 E-value=0.17 Score=47.71 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=27.4
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (530)
..+++.|++|+|||..+. .+...+... +..++++ +..++..++.
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~---~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK---GVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc---CCeEEEE-EHHHHHHHHH
Confidence 349999999999998654 355555542 3345444 4455554433
No 266
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.09 Score=51.75 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=20.4
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~ 97 (530)
.|+++.|+||+|||.+.-. +.+.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHhh
Confidence 5699999999999987544 55555553
No 267
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.27 E-value=0.065 Score=54.38 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=41.1
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhc--CCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~--~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
.++-++|+|..|||||.+++.-+...+... ...+..+||+.|++....-+.+.|-+++.
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 356689999999999998665444333332 22334599999999988777776666643
No 268
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.26 E-value=0.16 Score=53.81 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=55.1
Q ss_pred HHHHHCCCCccchhhHHHHHHhcCCCCCC-CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH
Q 009641 41 VALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (530)
Q Consensus 41 ~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (530)
..+..+.......-|.+.+..++. .+ +-+++.|.=|-|||.+..+.+....... ...+++|.+|+.+-++.+.+
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~---~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~--~~~~iiVTAP~~~nv~~Lf~ 279 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLD---APKRALVLTADRGRGKSAALGIALAAAARLA--GSVRIIVTAPTPANVQTLFE 279 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHc---CCCceEEEEcCCCCcHhHHHhHHHHHHHHhc--CCceEEEeCCCHHHHHHHHH
Confidence 335554433444444444444443 23 3588899999999999887663333222 14579999999998888888
Q ss_pred HHHHhccccCce
Q 009641 120 VFAAIAPAVGLS 131 (530)
Q Consensus 120 ~l~~~~~~~~~~ 131 (530)
.+.+-+..+|.+
T Consensus 280 fa~~~l~~lg~~ 291 (758)
T COG1444 280 FAGKGLEFLGYK 291 (758)
T ss_pred HHHHhHHHhCCc
Confidence 777766666554
No 269
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.25 E-value=0.47 Score=38.96 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=13.4
Q ss_pred ccEEEEechhHhhhHh
Q 009641 198 LCYLVVDETDRLLREA 213 (530)
Q Consensus 198 ~~~lViDEah~~~~~~ 213 (530)
..+++|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5899999999986654
No 270
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.23 E-value=0.15 Score=51.76 Aligned_cols=81 Identities=16% Similarity=0.037 Sum_probs=58.6
Q ss_pred CCCCccchhhHHHHHHhcCCCCCC------CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~------~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (530)
.+| .+-|||+-.+-.++.....+ +.++|..|=+-|||..+...+...+.-....+....|++|+.+-+.+...
T Consensus 58 ~p~-~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 58 FPE-SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred Ccc-ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhH
Confidence 454 78999999887776433222 35889999999999766544444443333567789999999999998888
Q ss_pred HHHHhccc
Q 009641 120 VFAAIAPA 127 (530)
Q Consensus 120 ~l~~~~~~ 127 (530)
.++.....
T Consensus 137 ~ar~mv~~ 144 (546)
T COG4626 137 PARDMVKR 144 (546)
T ss_pred HHHHHHHh
Confidence 88876544
No 271
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.20 E-value=0.19 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=17.4
Q ss_pred CcEEEECCCCchHHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQ 92 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~ 92 (530)
+..|+.||.|+||+..+...+-.
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ 42 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARA 42 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHH
Confidence 55899999999999865544433
No 272
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.20 E-value=0.11 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=17.5
Q ss_pred CCcEEEECCCCchHHHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l 91 (530)
++.+++.+|||+|||.+....+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999987654433
No 273
>PTZ00293 thymidine kinase; Provisional
Probab=95.19 E-value=0.14 Score=45.77 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=27.8
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
|+--++.||++||||.-. +-.+.+... .+.+++++-|...
T Consensus 4 G~i~vi~GpMfSGKTteL-Lr~i~~y~~---ag~kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTEL-MRLVKRFTY---SEKKCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHHH-HHHHHHHHH---cCCceEEEEeccc
Confidence 556788999999999643 334444443 4557999988754
No 274
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=95.17 E-value=0.013 Score=66.45 Aligned_cols=96 Identities=23% Similarity=0.382 Sum_probs=77.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCC-----------HHHHHHHHHHHhcCCccEEEEecccccCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-----------QSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~-----------~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD 400 (530)
.-..|+||+.+..+....+.+.+... ..+..+.|.+. ...+.+++..|....+++|++|.++.+|+|
T Consensus 292 ~l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d 369 (1606)
T KOG0701|consen 292 TLSGIIFVDQRYTAYVLLELLREIFS--NDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVD 369 (1606)
T ss_pred hhhheeecccchHHHHHHHHHHHhhc--cCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcc
Confidence 34669999999999999988876432 22222444322 233668899999999999999999999999
Q ss_pred CCCCCEEEEccCCCChhHHHHHHhhhhcC
Q 009641 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (530)
Q Consensus 401 ip~~~~VI~~~~p~s~~~y~Qr~GR~gR~ 429 (530)
++.++.|+.++.|.....|+|..||+-+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 370 VPKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhhhhheeccCcchHHHHHHhhcccccc
Confidence 99999999999999999999999999664
No 275
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.16 E-value=0.23 Score=48.20 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=16.8
Q ss_pred CccEEEEechhHhhhHhhhhHHHHHHh
Q 009641 197 HLCYLVVDETDRLLREAYQAWLPTVLQ 223 (530)
Q Consensus 197 ~~~~lViDEah~~~~~~~~~~~~~i~~ 223 (530)
..++|||||+|.+........+..++.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le 126 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFME 126 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHH
Confidence 467999999998833333344444443
No 276
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.12 E-value=0.16 Score=46.61 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.7
Q ss_pred CCcEEEECCCCchHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~ 88 (530)
+..+++.||+|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56899999999999986543
No 277
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.09 E-value=0.16 Score=51.57 Aligned_cols=61 Identities=18% Similarity=0.094 Sum_probs=38.2
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
++.++. .+..|.-+++.+++|+|||...+..+. .+.. .+.+++|++-. +-..|+...++++
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~-~~a~---~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAA-RLAA---AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHH-HHHh---cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 344554 344566789999999999986444333 3322 24478888753 4456666666555
No 278
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.08 E-value=0.075 Score=47.35 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=16.3
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
.++++.+|+|+|||.+...
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 5799999999999987543
No 279
>PLN03025 replication factor C subunit; Provisional
Probab=94.99 E-value=0.13 Score=50.02 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=15.8
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
.++++.||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999976544
No 280
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.98 E-value=0.16 Score=60.94 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=46.8
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (530)
.+++-|++|+..++.. ..+-.+|.++.|+|||.+ +-.++..+.. .|.++++++||-.-+.++.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~-l~~l~~~~~~---~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEI-AQLLLHLASE---QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHH-HHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHH
Confidence 6899999998877641 235688999999999975 3334444443 356899999998766655443
No 281
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.97 E-value=0.15 Score=54.98 Aligned_cols=77 Identities=6% Similarity=0.114 Sum_probs=63.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEcc
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~ 411 (530)
+.++||.+++++.+..+.+.|++.. +..+..+||+++..+|.+.+.+...|+.+|+|+|..... +.+.++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 5689999999999999999998642 367889999999999999999999999999999974322 4566777777644
No 282
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.095 Score=52.94 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=16.3
Q ss_pred CcEEEECCCCchHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~ 89 (530)
+.+++.||.|+|||.++.+.
T Consensus 41 ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 44799999999999876553
No 283
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.95 E-value=0.14 Score=54.28 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.5
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+-+|+.+|.|+|||.+..+
T Consensus 39 HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 39 HAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3468999999999987554
No 284
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.95 E-value=0.27 Score=51.32 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=27.5
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (530)
.+++.|++|+|||.... .+.+.+... ..+.+++|+. ..+++.+....
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~-~~g~~V~Yit-aeef~~el~~a 362 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRL-YPGTRVRYVS-SEEFTNEFINS 362 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHh-CCCCeEEEee-HHHHHHHHHHH
Confidence 48999999999997533 233333321 1344566555 45565554443
No 285
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.95 E-value=0.081 Score=50.93 Aligned_cols=64 Identities=22% Similarity=0.263 Sum_probs=41.6
Q ss_pred HHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 43 l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
+.+.|. +++.|...+..++. .+.+++++|+||||||.. +-.++..+... .++.+++.+=.+.||
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAID---SRLNIVISGGTGSGKTTL-ANAVIAEIVAS-APEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHHhcC-CCCceEEEecCCccc
Confidence 334453 66777777666554 467999999999999974 34444444322 133467777777776
No 286
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.94 E-value=0.28 Score=50.71 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=41.1
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHh
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l 94 (530)
++| +|+++|.+-+.++..-+-.|+-.|+.+|||+|||+..+-.++.+|
T Consensus 12 fPy-~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 12 FPY-TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCC-CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 456 899999999988877677889999999999999998877777666
No 287
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.90 E-value=0.13 Score=54.91 Aligned_cols=79 Identities=14% Similarity=0.234 Sum_probs=66.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-cccCCCCCCCCEEE
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiDip~~~~VI 408 (530)
.+.+++|.+||+..|..+++.+.+.. ..++++..+||+++..+|...++...+|+.+|+|+|.. +...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 46689999999999999998887643 34588999999999999999999999999999999974 44457777788776
Q ss_pred E
Q 009641 409 N 409 (530)
Q Consensus 409 ~ 409 (530)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 5
No 288
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.90 E-value=0.13 Score=52.13 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=26.7
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
..+++.||+|+|||.... .+...+.. .+.+++++.. ..+..+
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~---~~~~v~yi~~-~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE---SGGKILYVRS-ELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH---cCCCEEEeeH-HHHHHH
Confidence 458999999999997543 34444443 2446777654 344443
No 289
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.88 E-value=0.16 Score=60.96 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=44.0
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHH---HHHHHHhhhcCCCcccEEEEcCcHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA---LPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~---~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (530)
.+++.|+.|+..++.. .++-++|.++.|+|||.... -++.+.+.. .+.+++.++||-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHH
Confidence 7999999998887641 23557889999999997641 223333333 355789999997765543
No 290
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.86 E-value=0.15 Score=52.75 Aligned_cols=78 Identities=8% Similarity=0.114 Sum_probs=63.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEc
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~ 410 (530)
.+.++||.+|++..+..+++.|.+.. +..+..+||+++..+|.+...+..+|+.+|+|+|..+-. ..++++.+||.-
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 36689999999999999999998643 256889999999999999999999999999999975332 356677777754
Q ss_pred c
Q 009641 411 D 411 (530)
Q Consensus 411 ~ 411 (530)
+
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 3
No 291
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.82 E-value=0.095 Score=52.73 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEE
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil 107 (530)
..++++.||+|+|||.+.-. ++..+.... .+..++++
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~-v~~~l~~~~-~~~~~v~i 91 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKK-VFEELEEIA-VKVVYVYI 91 (394)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHhc-CCcEEEEE
Confidence 36799999999999986433 444443322 22344554
No 292
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.80 E-value=0.23 Score=52.97 Aligned_cols=93 Identities=17% Similarity=0.107 Sum_probs=74.2
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc
Q 009641 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (530)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~ 394 (530)
+.|.+....++... .++.+||.++.+..+..+.+.|....+ +..+..+|++++..+|.+......+|+.+|+|.|..
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 46777776666532 467899999999999999999987542 146889999999999999999999999999999986
Q ss_pred cccCCCCCCCCEEEEcc
Q 009641 395 MTRGMDVEGVNNVVNYD 411 (530)
Q Consensus 395 ~~~GiDip~~~~VI~~~ 411 (530)
+.. .-+++...||..+
T Consensus 250 AvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 250 AVF-APVEDLGLVAIWD 265 (665)
T ss_pred eEE-eccCCCCEEEEEc
Confidence 432 3556677777654
No 293
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.79 E-value=0.075 Score=54.58 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.3
Q ss_pred CcEEEECCCCchHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~ 90 (530)
+.+++.||.|+|||.++.+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 569999999999998765543
No 294
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.70 E-value=0.11 Score=49.40 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.6
Q ss_pred CCcEEEECCCCchHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~ 88 (530)
+.++++.||+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45799999999999987643
No 295
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.62 E-value=0.22 Score=47.84 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=27.3
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (530)
++.+++.||+|+|||..+.. +...+.. .+..++++.- -.++.++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~A-ia~~l~~---~g~~v~~~~~-~~l~~~lk 200 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA-IANELAK---KGVSSTLLHF-PEFIRELK 200 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH---cCCCEEEEEH-HHHHHHHH
Confidence 46899999999999986543 4444443 2344555532 24554433
No 296
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.55 E-value=0.31 Score=49.73 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.7
Q ss_pred CCcEEEECCCCchHHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~ 90 (530)
.+.+|+.||.|+|||.++.+.+
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred CceEEEECCCCccHHHHHHHHH
Confidence 3569999999999998765543
No 297
>PRK09183 transposase/IS protein; Provisional
Probab=94.55 E-value=0.18 Score=47.25 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=27.5
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
.+.++++.||+|+|||..+........ . .+.+++++. ..+|..+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~-~---~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV-R---AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH-H---cCCeEEEEe-HHHHHHH
Confidence 467899999999999976554333222 2 234566554 3455544
No 298
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.54 E-value=0.1 Score=48.35 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=41.2
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
++.++. .+..|..++|.||+|+|||..++-.+.+.+.. +.+++|++- .+-..|+.+.+..+.
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~----ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 344443 34456789999999999998665555555533 447888884 455666677666653
No 299
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.51 E-value=0.21 Score=55.40 Aligned_cols=79 Identities=11% Similarity=0.262 Sum_probs=65.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhc-CCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-ccccCCCCCCCCEEE
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-~~~~GiDip~~~~VI 408 (530)
.+.+++|.+||+..|...++.+... ...++.+..++|..+..++.++++.+++|+.+|+|+|. .+...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999999988763 33457888899999999999999999999999999997 444567787888776
Q ss_pred E
Q 009641 409 N 409 (530)
Q Consensus 409 ~ 409 (530)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 5
No 300
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.50 E-value=0.2 Score=49.45 Aligned_cols=40 Identities=20% Similarity=0.084 Sum_probs=23.9
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
..-+++.||+|+|||-......-..+. ..+..++++++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~--~~~~a~v~y~~se 152 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALA--NGPNARVVYLTSE 152 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHh--hCCCceEEeccHH
Confidence 356999999999999753332222222 2244466666543
No 301
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.40 E-value=0.077 Score=50.21 Aligned_cols=38 Identities=13% Similarity=-0.160 Sum_probs=23.3
Q ss_pred ccchhhHHHHHHhcCCCCCC-CcEEEECCCCchHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~ 87 (530)
-+++.+.+++..+...+..+ ..+++.||+|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 34455555555433222233 358899999999997543
No 302
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.39 E-value=0.069 Score=50.77 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=43.9
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
..|.++++-|...+..++. ...|+++++.||||||.. +..+.......-++|.+=-|.+|.-+
T Consensus 153 i~~gt~~~~~a~~L~~av~---~r~NILisGGTGSGKTTl-----LNal~~~i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVG---IRCNILISGGTGSGKTTL-----LNALSGFIDSDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHh---hceeEEEeCCCCCCHHHH-----HHHHHhcCCCcccEEEEeehhhhccC
Confidence 3455899999988766654 246999999999999963 22332222234489999888888543
No 303
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.37 E-value=0.16 Score=48.68 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=41.2
Q ss_pred HHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
.|.+.| .+.+-|...+..++. .+++++++||||||||.. +-.++..+... .+..+++++=.+.++
T Consensus 110 ~l~~~g--~~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-~~~~ri~tiEd~~El 174 (299)
T TIGR02782 110 DYVEAG--IMTAAQRDVLREAVL---ARKNILVVGGTGSGKTTL-ANALLAEIAKN-DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHhcC--CCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHhhcc-CCCceEEEECCchhh
Confidence 334445 355566666555543 467999999999999974 34344444331 124478888777776
No 304
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.27 E-value=0.35 Score=49.18 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=27.3
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (530)
..+++.||+|+|||..... +...+.... .+.+++|+.. ..+..+.
T Consensus 131 n~l~lyG~~G~GKTHLl~a-i~~~l~~~~-~~~~v~yi~~-~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQS-IGNYVVQNE-PDLRVMYITS-EKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHHH-HHHHHHHhC-CCCeEEEEEH-HHHHHHH
Confidence 4599999999999986433 444444322 3446777754 3444433
No 305
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.26 E-value=0.1 Score=54.93 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.7
Q ss_pred EEEECCCCchHHHHHHHHH
Q 009641 72 LCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~ 90 (530)
.|+.||.|+|||.++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998765543
No 306
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.25 E-value=0.097 Score=48.66 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=20.7
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhc
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNR 97 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~ 97 (530)
=++|.+|||||||.+ +..|+..+...
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 488999999999986 45677777664
No 307
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.26 Score=50.42 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.6
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+.+++.||+|+|||..+.+
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999987654
No 308
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.23 E-value=0.22 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=17.6
Q ss_pred CCcEEEECCCCchHHHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l 91 (530)
++-+.+.+|||+|||.+....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 34578999999999987665443
No 309
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.22 Score=52.20 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=16.7
Q ss_pred CcEEEECCCCchHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~ 90 (530)
+-+|+.||.|+|||.++.+.+
T Consensus 38 HAyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457999999999998765533
No 310
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.17 E-value=0.14 Score=51.17 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=20.9
Q ss_pred HhcCCCCCCCcEEEECCCCchHHHHHH
Q 009641 61 ETIGPGLFERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 61 ~~~~~~~~~~~~li~apTGsGKT~~~~ 87 (530)
.++..+..++++++.+|+|+|||..+-
T Consensus 186 ~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 186 TILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344445568999999999999997653
No 311
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.26 Score=47.54 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.0
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
+.+|..+|+|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 67999999999999753
No 312
>PRK05973 replicative DNA helicase; Provisional
Probab=94.13 E-value=0.19 Score=46.07 Aligned_cols=85 Identities=18% Similarity=0.097 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHH-----HHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVW-----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~-----~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
|+..+-+.-.+-||....-....+- +.+...+..|.-++|.|++|+|||...+-.+.+.... +.+++|++-
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~----Ge~vlyfSl 100 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS----GRTGVFFTL 100 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEEE
Confidence 6666666666778854322222211 1235566667789999999999998765555554433 446888864
Q ss_pred cHHHHHHHHHHHHHh
Q 009641 110 TRDLALQVKDVFAAI 124 (530)
Q Consensus 110 t~~L~~Q~~~~l~~~ 124 (530)
- +-..|+.+.+..+
T Consensus 101 E-es~~~i~~R~~s~ 114 (237)
T PRK05973 101 E-YTEQDVRDRLRAL 114 (237)
T ss_pred e-CCHHHHHHHHHHc
Confidence 3 2246667777665
No 313
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.12 E-value=0.09 Score=48.28 Aligned_cols=61 Identities=21% Similarity=0.147 Sum_probs=38.6
Q ss_pred HHhc-CCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 60 QETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 60 ~~~~-~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
++++ ..+..|..+++.+|+|+|||.-.+-.+.+.+... +.+++|++-. +-..++.+.++.+
T Consensus 9 D~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~---ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 9 DELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNF---GEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp HHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH---T--EEEEESS-S-HHHHHHHHHTT
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc---CCcEEEEEec-CCHHHHHHHHHHc
Confidence 3444 2344567899999999999987666566666551 2368888743 3345566666655
No 314
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.08 E-value=0.28 Score=55.78 Aligned_cols=79 Identities=11% Similarity=0.227 Sum_probs=64.6
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhc-CCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-ccccCCCCCCCCEEE
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-~~~~GiDip~~~~VI 408 (530)
.+.+++|.+||+..|..+++.+.+. ...++.+..++|..+..++.++++..++|..+|+|+|. .+...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999988753 33456788899999999999999999999999999996 444456666777766
Q ss_pred E
Q 009641 409 N 409 (530)
Q Consensus 409 ~ 409 (530)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 315
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.22 Score=49.29 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.5
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+.+++.||.|+|||..+..
T Consensus 39 h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 3468999999999987654
No 316
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.02 E-value=0.28 Score=47.37 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=30.9
Q ss_pred cchhhHHHHHHhcCCCCCC---CcEEEECCCCchHHHHHHHHHH
Q 009641 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~~~~l 91 (530)
++|||..+|..+...+..+ +-.++.||.|.||+..+...+-
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~ 46 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQ 46 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHH
Confidence 4789999988877655444 4588999999999987655443
No 317
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.01 E-value=0.37 Score=48.70 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.3
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
..+++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997654
No 318
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.00 E-value=0.38 Score=48.95 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=18.0
Q ss_pred CCcEEEECCCCchHHHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l 91 (530)
++-+.+.||||+|||.+....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45588999999999988665443
No 319
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.90 E-value=0.35 Score=47.45 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.3
Q ss_pred cEEEECCCCchHHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~ 88 (530)
.+++.||+|+|||..+..
T Consensus 38 ~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 699999999999986544
No 320
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.86 E-value=0.77 Score=46.00 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=34.5
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEeec
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~--Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g 137 (530)
-+++.+++|+|||.+..-.+. .+.. .+.++++++ |.|.-+.+ +++.++...++++.....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~---~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~ 163 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR---KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYT 163 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH---CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecC
Confidence 477899999999987655443 3333 244666665 44544433 334444444666554443
No 321
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.85 E-value=0.2 Score=51.98 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.1
Q ss_pred cEEEECCCCchHHHHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~ 90 (530)
.+|+.||.|+|||..+.+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998765543
No 322
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.85 E-value=0.16 Score=49.30 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=28.7
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (530)
+.++++.||||+|||..+.. +...+.. .+..|+++ +...|..++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~---~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLD---RGKSVIYR-TADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHH---CCCeEEEE-EHHHHHHHHH
Confidence 47899999999999986543 4444443 23355554 4456655543
No 323
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.83 E-value=0.29 Score=48.33 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=36.8
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
++.++. .+..|.-+++.+++|+|||...+..+ ..+.. .+.+++|+.-. +-..|+.....++
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a-~~~a~---~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVA-ARLAK---RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHH-HHHHh---cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 344453 34456678999999999998644433 33332 23478888754 3345665555554
No 324
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.79 E-value=0.17 Score=48.22 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=26.9
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (530)
.++|+++|+|+|||..+-+.+. . .+....+.+=+.-|.+-.++..+.
T Consensus 163 pSmIlWGppG~GKTtlArlia~-t---sk~~SyrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAS-T---SKKHSYRFVELSATNAKTNDVRDI 209 (554)
T ss_pred CceEEecCCCCchHHHHHHHHh-h---cCCCceEEEEEeccccchHHHHHH
Confidence 4799999999999975433222 1 111223455555555554443333
No 325
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.79 E-value=0.4 Score=50.50 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.7
Q ss_pred CcEEEECCCCchHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l 91 (530)
+.+|+.||.|+|||.++.+.+-
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999987665443
No 326
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.76 E-value=0.17 Score=48.63 Aligned_cols=53 Identities=21% Similarity=0.091 Sum_probs=33.6
Q ss_pred HHHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 58 a~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
.++.++. .+..|+-+.|.+|+|+|||..++..+.+... .+.+++|+..-..+-
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~----~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALD 96 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEcccchhH
Confidence 3444553 4445677889999999999865554444433 244688886554443
No 327
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.76 E-value=0.25 Score=45.70 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.0
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
..+++.+|+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 469999999999997543
No 328
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.68 E-value=0.4 Score=43.68 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=30.3
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
++.++. .+..|.-+++.+++|+|||...+..+.+... .+.+++|+.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~----~g~~v~yi~ 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG----QGKKVAYID 54 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEE
Confidence 455554 3445667899999999999876554444432 244688874
No 329
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.65 E-value=0.37 Score=49.77 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.6
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+-+++.||+|+|||.++.+
T Consensus 37 ha~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARL 55 (504)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3469999999999987654
No 330
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.63 E-value=0.88 Score=44.13 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=30.3
Q ss_pred cchhhHHHHHHhcCCCCC-CCcEEEECCCCchHHHHHHHHHHH
Q 009641 51 LFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYALPIVQ 92 (530)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~-~~~~li~apTGsGKT~~~~~~~l~ 92 (530)
++|+|..+|..+....-+ .+..++.||.|.|||..+...+-.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ 44 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQA 44 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHH
Confidence 478999999887754211 245889999999999876554433
No 331
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.59 E-value=0.31 Score=47.45 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=31.8
Q ss_pred ccchhhHHHHHHhcCCCCCC---CcEEEECCCCchHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~~~~l 91 (530)
.++|||..+|..+...+..+ +-.++.||.|.||+..+...+-
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~ 46 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHH
Confidence 46899999999877655444 4588999999999987654433
No 332
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.54 E-value=0.48 Score=46.35 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=18.5
Q ss_pred CCcEEEECCCCchHHHHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQ 92 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~ 92 (530)
++.+++.+|+|+|||......+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 566889999999999876555443
No 333
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.53 E-value=0.43 Score=44.04 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=37.7
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
++.++. .+..|.-+++.+++|+|||......+...+.. +.+++|+.-- +-..++.+.+..+
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ----GKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC----CCEEEEEEcC-CCHHHHHHHHHHC
Confidence 344443 33346778999999999998655544544432 4467777654 3334556666655
No 334
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.3 Score=50.79 Aligned_cols=71 Identities=18% Similarity=0.408 Sum_probs=56.7
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCC--cceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----ccccC-CCCCCCCE
Q 009641 335 CIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEGVNN 406 (530)
Q Consensus 335 ~iVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iDip~~~~ 406 (530)
+||++||++.|..+++.+...+.. ++.+..+.|+++...+. +.++.| .+|||+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999988876432 47788999999876665 444456 99999998 46666 88888888
Q ss_pred EEE
Q 009641 407 VVN 409 (530)
Q Consensus 407 VI~ 409 (530)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 775
No 335
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.49 E-value=0.75 Score=45.38 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=18.1
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHh
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l 94 (530)
+-.|+.||.|+||+..+...+-..+
T Consensus 42 HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4589999999999987654433333
No 336
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.45 E-value=0.16 Score=48.90 Aligned_cols=53 Identities=19% Similarity=0.069 Sum_probs=34.5
Q ss_pred HHHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 58 a~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
.++.++. .+-.|+-+.+.+|+|+|||..++..+.+... .+.+++|+.+-..+-
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~----~g~~~vyId~E~~~~ 96 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK----LGGTVAFIDAEHALD 96 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCCEEEECccccHH
Confidence 3445554 3445677889999999999866554444433 244788888665544
No 337
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.42 E-value=0.57 Score=50.56 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.8
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
.++++.||+|+|||..+..
T Consensus 53 ~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARI 71 (725)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999976543
No 338
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.39 E-value=0.51 Score=48.81 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=16.6
Q ss_pred CcEEEECCCCchHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~ 90 (530)
+-+|+.||.|+|||.++.+.+
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lA 59 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILA 59 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 457999999999998765533
No 339
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=0.062 Score=50.21 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=16.5
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
...|+++.+|||||||+.+.
T Consensus 96 ~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeccEEEECCCCCcHHHHHH
Confidence 35689999999999997543
No 340
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.33 E-value=0.16 Score=53.14 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=50.8
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHH-HHHHHhccc
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK-DVFAAIAPA 127 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~-~~l~~~~~~ 127 (530)
..+|||++.++.+-++- -+.+.+..++-+|||.+.+..+...+.. ....++++.||..+|.+.. ..+..+...
T Consensus 16 ~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~---~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQ---DPGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEe---CCCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 67899999877654422 2578999999999999644433322222 2236999999999999877 456666443
No 341
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.30 E-value=1.3 Score=46.33 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=43.5
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 127 (530)
.+-.++..|==.|||.... +++..+... ..+.++++.+|.+..++...+++...+..
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s-~~Gi~IgytAH~~~ts~~vF~eI~~~le~ 310 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT-FRGIKIGYTAHIRKATEPVFEEIGARLRQ 310 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh-CCCCEEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 4567788899999998655 555544432 25778999999999999999999887553
No 342
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.30 E-value=0.31 Score=49.00 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=41.9
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH-HHHHHHHHHHHhccccCc
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD-LALQVKDVFAAIAPAVGL 130 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~-L~~Q~~~~l~~~~~~~~~ 130 (530)
.++.++.|||||.+...-++..+.... ++.+++++-|+.. |..-+...+.......++
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~-~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK-KQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC-CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 578999999999998877777766641 3457898988877 555566777765554443
No 343
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.28 E-value=0.25 Score=49.61 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=16.8
Q ss_pred CcEEEECCCCchHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~ 90 (530)
+.+|++||.|+|||.++.+.+
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 448899999999998765543
No 344
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.23 E-value=0.95 Score=45.54 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=32.1
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEe
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~--Pt~~L~~Q~~~~l~~~~~~~~~~v~~~ 135 (530)
-+++.+++|+|||.+..-.+...... .+.+++++. +.|.-+.+ .++.++...++++...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~---~g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~~ 161 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK---QGKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFAL 161 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh---CCCeEEEEeccccchHHHH---HHHHHHHhcCCceEec
Confidence 47889999999998866554442212 233555554 33444333 2333333345555443
No 345
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.21 E-value=0.3 Score=45.81 Aligned_cols=40 Identities=20% Similarity=0.022 Sum_probs=28.1
Q ss_pred CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
.+..|.-++|.+++|+|||...+-.+.+.+.. +.+++|++
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~----Ge~vlyis 71 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASR----GNPVLFVT 71 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC----CCcEEEEE
Confidence 33456779999999999998665545544432 44788887
No 346
>PF13173 AAA_14: AAA domain
Probab=93.19 E-value=1.1 Score=36.88 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.6
Q ss_pred CCcEEEECCCCchHHHH
Q 009641 69 ERDLCINSPTGSGKTLS 85 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (530)
++-+++.||.|+|||..
T Consensus 2 ~~~~~l~G~R~vGKTtl 18 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTL 18 (128)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45689999999999975
No 347
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.18 E-value=0.045 Score=47.94 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=31.2
Q ss_pred chhHHHhhcCCCcEEEeCChHHHHHHhcCC--CCCCCCccEEEEechhHhhh
Q 009641 162 PEDVLQELQSAVDILVATPGRLMDHINATR--GFTLEHLCYLVVDETDRLLR 211 (530)
Q Consensus 162 ~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah~~~~ 211 (530)
|....+.....+||+|+++..|++-..... .+.+ .-.+|||||||.+.+
T Consensus 109 PY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 109 PYYLARELAKNADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGG
T ss_pred hhHHHHHhcccCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHH
Confidence 344455666778999999998875432211 1222 457999999999854
No 348
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.17 E-value=0.63 Score=45.33 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=29.6
Q ss_pred cchhhHHHHHHhcCCC-CCCCcEEEECCCCchHHHHHHHHHH
Q 009641 51 LFPVQVAVWQETIGPG-LFERDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 51 ~~~~Q~~a~~~~~~~~-~~~~~~li~apTGsGKT~~~~~~~l 91 (530)
++|||...|..+.... .-.+-.++.||.|.||+..+...+-
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~ 43 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQ 43 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHH
Confidence 4799999998876531 1124688999999999987655443
No 349
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.15 E-value=0.26 Score=53.44 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=15.4
Q ss_pred cEEEECCCCchHHHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~ 89 (530)
-+|+.||.|+|||.++.+.
T Consensus 40 AyLFtGPpGtGKTTLARiL 58 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLF 58 (944)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3589999999999876543
No 350
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.07 E-value=0.28 Score=48.33 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=21.1
Q ss_pred CCCCCCcEEEECCCCchHHHHHHHHHHHHh
Q 009641 65 PGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~~~~~~l~~l 94 (530)
++-.|+.++|.+|+|+|||..... +...+
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 455689999999999999975333 44443
No 351
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.07 E-value=0.88 Score=41.53 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=15.3
Q ss_pred CCcEEEECCCCchHHHH
Q 009641 69 ERDLCINSPTGSGKTLS 85 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (530)
.+|++..+|+|+|||..
T Consensus 151 PknVLFyGppGTGKTm~ 167 (368)
T COG1223 151 PKNVLFYGPPGTGKTMM 167 (368)
T ss_pred cceeEEECCCCccHHHH
Confidence 47999999999999974
No 352
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.03 E-value=0.31 Score=45.18 Aligned_cols=54 Identities=13% Similarity=-0.032 Sum_probs=34.8
Q ss_pred HHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc---CcHHHHHH
Q 009641 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL---PTRDLALQ 116 (530)
Q Consensus 60 ~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~---Pt~~L~~Q 116 (530)
+.++..+..|.-++|.|+||+|||...+-.+.+.+.. .+.+++|++ |..+++..
T Consensus 4 D~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~---~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 4 DNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKK---QGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred hhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCceEEEeCCCCHHHHHHH
Confidence 3445555567789999999999997654444444433 144788887 34444443
No 353
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.00 E-value=0.28 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.0
Q ss_pred CcEEEECCCCchHHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQ 92 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~ 92 (530)
+-+|+.+|.|+|||.++.+.+-.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 44799999999999887664443
No 354
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.00 E-value=0.77 Score=40.67 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.7
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+.+++.+|+|+|||..+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~ 33 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALA 33 (188)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5689999999999986544
No 355
>PRK10867 signal recognition particle protein; Provisional
Probab=92.97 E-value=1.3 Score=44.56 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=32.8
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEe
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~--Pt~~L~~Q~~~~l~~~~~~~~~~v~~~ 135 (530)
-+++.+++|+|||.+..-.+.. +... .+.+++++. +.|.-+.+ .++.++...++.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~-l~~~--~G~kV~lV~~D~~R~aa~e---QL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKY-LKKK--KKKKVLLVAADVYRPAAIE---QLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHHh--cCCcEEEEEccccchHHHH---HHHHHHhhcCCeEEec
Confidence 4778999999999876654443 3332 134566654 44544432 2333333346665443
No 356
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.94 E-value=0.15 Score=51.14 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=28.1
Q ss_pred chhhHHHHHHhcCCCCCC-CcEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 52 FPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
.+.|...+..++. .. .=+++.+|||||||.+ +..++..+..
T Consensus 243 ~~~~~~~~~~~~~---~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLN---RPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHh---CCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 6677666655554 23 3488999999999986 4556666654
No 357
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.94 E-value=0.4 Score=45.00 Aligned_cols=49 Identities=16% Similarity=-0.006 Sum_probs=32.2
Q ss_pred HHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 59 ~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
++.++..+..|.=+++.|+||.|||..++-.+.+.+... +..++|++.-
T Consensus 9 LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~---~~~vly~SlE 57 (259)
T PF03796_consen 9 LDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG---GYPVLYFSLE 57 (259)
T ss_dssp HHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT---SSEEEEEESS
T ss_pred HHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc---CCeEEEEcCC
Confidence 344555555566789999999999986655555555442 3578888753
No 358
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=92.88 E-value=0.26 Score=53.27 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=57.0
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
.+++-|++|+... ...++|.|..|||||.+..--+...+.........++.++=|+..|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5889999986442 4678999999999999877666666666545555799999999999999999998875
No 359
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.84 E-value=0.92 Score=42.81 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=23.0
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+-+++.+|+|+|||.+..-.+.. +.. .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~-l~~---~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK-LKK---QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHh---cCCEEEEEe
Confidence 44778899999999876655543 332 234666665
No 360
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.80 E-value=1.4 Score=38.38 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=20.6
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+++.+++|+|||......+. .+.. .+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~-~~~~---~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL-YLKK---KGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH---CCCcEEEEE
Confidence 57899999999987544333 3333 233555543
No 361
>PRK09354 recA recombinase A; Provisional
Probab=92.79 E-value=0.29 Score=47.47 Aligned_cols=52 Identities=21% Similarity=0.095 Sum_probs=34.2
Q ss_pred HHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 59 ~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
++.++. .+..|+-+.|.+|+|||||...+..+.+.... +.+++|+..-..+-
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~----G~~~~yId~E~s~~ 101 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALD 101 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEECCccchH
Confidence 444444 34446678899999999998766555544432 44788887655544
No 362
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.76 E-value=0.083 Score=52.88 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=36.9
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
++++.||||||||..+++|.+-.. ...+||+=|.-++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999988866432 126888889999987766666554
No 363
>PRK04195 replication factor C large subunit; Provisional
Probab=92.75 E-value=0.52 Score=48.74 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=15.9
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 364
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.75 E-value=0.25 Score=52.22 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.5
Q ss_pred CcEEEECCCCchHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~ 89 (530)
+.+|+.||.|+|||.++.+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46899999999999876543
No 365
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.70 E-value=0.37 Score=50.46 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=16.6
Q ss_pred CcEEEECCCCchHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~ 90 (530)
+-+|+.||.|+|||..+.+.+
T Consensus 39 HA~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 447999999999998765533
No 366
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.64 E-value=0.32 Score=43.10 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=25.6
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (530)
.+.+-|.+.+...+. .+..+++.+|||||||...
T Consensus 9 ~~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVE---ARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHH
Confidence 456667776655554 5789999999999999753
No 367
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.63 E-value=0.44 Score=49.97 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.2
Q ss_pred CcEEEECCCCchHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~ 90 (530)
..+|+.+|.|+|||.++.+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468899999999998876544
No 368
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.63 E-value=0.13 Score=53.13 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=38.6
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.++++.||||||||..+++|.+-.. ++ .+||.=|.-+|.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-----~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-----PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-----cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 3699999999999999999976332 22 5888889999988777766665
No 369
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.51 Score=48.35 Aligned_cols=105 Identities=22% Similarity=0.230 Sum_probs=0.0
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhc
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 151 (530)
+|+++|+|+|||+.+ ++.|++ .+.+...+-|-.-....
T Consensus 548 vLL~GPPGCGKTLlA------------------------KAVANE-----------ag~NFisVKGPELlNkY------- 585 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLA------------------------KAVANE-----------AGANFISVKGPELLNKY------- 585 (802)
T ss_pred eEEeCCCCccHHHHH------------------------HHHhhh-----------ccCceEeecCHHHHHHH-------
Q ss_pred CccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh-------hhHhhhhHHHHHHhh
Q 009641 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-------LREAYQAWLPTVLQL 224 (530)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~-------~~~~~~~~~~~i~~~ 224 (530)
|+-.++-...+.. ...-+..++|+|||.|.+ ..+.....+.+++.-
T Consensus 586 -------------------------VGESErAVR~vFq--RAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtE 638 (802)
T KOG0733|consen 586 -------------------------VGESERAVRQVFQ--RARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTE 638 (802)
T ss_pred -------------------------hhhHHHHHHHHHH--HhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHH
Q ss_pred cccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCCh
Q 009641 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (530)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 280 (530)
+.-..... .+.++.||..+++
T Consensus 639 lDGl~~R~-----------------------------------gV~viaATNRPDi 659 (802)
T KOG0733|consen 639 LDGLEERR-----------------------------------GVYVIAATNRPDI 659 (802)
T ss_pred hccccccc-----------------------------------ceEEEeecCCCcc
No 370
>PRK04328 hypothetical protein; Provisional
Probab=92.53 E-value=0.35 Score=45.08 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=38.7
Q ss_pred HHHhcCC-CCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 59 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 59 ~~~~~~~-~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
++.++.. +..|..+++.+++|+|||...+-.+.+.+.. +.+++|++ +.+-..++.+.++.++
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~----ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 3444432 3356789999999999997655545554443 33677776 3344555666666653
No 371
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.53 E-value=0.31 Score=51.00 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=16.2
Q ss_pred cEEEECCCCchHHHHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~ 90 (530)
-+|+.||.|+|||.++.+.+
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998766543
No 372
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.50 E-value=0.53 Score=45.32 Aligned_cols=42 Identities=24% Similarity=0.150 Sum_probs=30.8
Q ss_pred ccchhhHHHHHHhcCCCCCC---CcEEEECCCCchHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~~~~l 91 (530)
.++|+|...|..+...+..+ +-.++.||.|.||+..+...+-
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~ 47 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSR 47 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH
Confidence 56889999888876544344 4589999999999976554333
No 373
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.49 E-value=0.33 Score=51.75 Aligned_cols=92 Identities=10% Similarity=0.126 Sum_probs=72.8
Q ss_pred cCCCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEe
Q 009641 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (530)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT 392 (530)
..+.|.+....++... .+..+||.+|.+.....+.+.|....+ .++..+|+++++.+|...+.+.++|+.+|+|.|
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg--~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG--AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC--CChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 4466777777766532 467899999999999999998886543 788999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEE
Q 009641 393 DAMTRGMDVEGVNNVVN 409 (530)
Q Consensus 393 ~~~~~GiDip~~~~VI~ 409 (530)
..+-. .-++++..+|.
T Consensus 304 RSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 304 RSALF-LPFKNLGLIIV 319 (730)
T ss_pred chhhc-CchhhccEEEE
Confidence 75321 34556666665
No 374
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.43 E-value=0.33 Score=45.59 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=35.8
Q ss_pred HHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
.|.++|| .+.|.+.+..++. ..+..+++.+|||||||... ..++..+.. .+.+++.+-...+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l-~all~~i~~---~~~~iitiEdp~E 119 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTL-YSALSELNT---PEKNIITVEDPVE 119 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHH-HHHHhhhCC---CCCeEEEECCCce
Confidence 4566775 4556666555443 12346899999999999753 334444432 2234555543334
No 375
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.43 E-value=0.63 Score=45.43 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.5
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
..+++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999998654
No 376
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.22 E-value=0.43 Score=50.30 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=16.7
Q ss_pred CcEEEECCCCchHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~ 90 (530)
+-+|++||.|+|||.++.+.+
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346999999999998766543
No 377
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.22 E-value=1.4 Score=43.94 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=16.9
Q ss_pred CCcEEEECCCCchHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~ 89 (530)
.+.+|+.||.|+|||..+...
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~l 56 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAF 56 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 356899999999999876543
No 378
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.19 E-value=2.8 Score=40.51 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=22.5
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+.-+.+.+|+|+|||.+....+. .+.. .+.+++++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~-~l~~---~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH-KYKA---QGKKVLLAA 149 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH-HHHh---cCCeEEEEe
Confidence 34577899999999987554333 2322 233566664
No 379
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.15 E-value=0.17 Score=53.18 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=40.3
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
..+++.||||||||..+++|.+-.+. ..+||+=|.-++........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 57999999999999999999876542 25888889999998877777665
No 380
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.13 E-value=0.59 Score=46.74 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=35.9
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeec
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g 137 (530)
.+.-+.+.||||+|||......+-....... .....++.+.+.-.+ ..+.+..++...|+++.....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~ 256 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKD 256 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCC
Confidence 3456889999999999876544433222211 112355555553332 233344454445666654433
No 381
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.12 E-value=0.73 Score=46.52 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=23.2
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
..+++.+++|+|||.+....+ ..+.. .+.++++++
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA-~~L~~---~g~kV~lV~ 130 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA-RYFKK---KGLKVGLVA 130 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHH---cCCeEEEec
Confidence 458889999999998765544 34443 233566554
No 382
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.11 E-value=0.37 Score=47.37 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=19.8
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhh
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~ 95 (530)
.+..+++.+|||||||... ..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3567999999999999753 44555443
No 383
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.11 E-value=0.19 Score=49.00 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=28.7
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
.+.++++.||||||||.. +-.++..+. ...+++.+=.+.+|.
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i~----~~~rivtiEd~~El~ 202 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAIP----PQERLITIEDTLELV 202 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHcccC----CCCCEEEECCCcccc
Confidence 478999999999999974 333443332 234677777777763
No 384
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.00 E-value=0.69 Score=48.81 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.8
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+-+|+.||.|+|||.++.+
T Consensus 39 hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARI 57 (576)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4478999999999987655
No 385
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.98 E-value=0.43 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.1
Q ss_pred cEEEECCCCchHHHHHHHHHHHHh
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l 94 (530)
-+++.+|.|+|||..+.. +...+
T Consensus 47 a~L~~G~~G~GKttlA~~-lA~~L 69 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFH-LANHI 69 (351)
T ss_pred eEeeECCCCCCHHHHHHH-HHHHH
Confidence 589999999999976544 33343
No 386
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.92 E-value=0.99 Score=47.08 Aligned_cols=88 Identities=16% Similarity=0.290 Sum_probs=68.2
Q ss_pred HHHHHHHh-cCCCcEEEEcCChHHHHHHHHHHHhc-CCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-cccC
Q 009641 322 YLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRG 398 (530)
Q Consensus 322 ~l~~~l~~-~~~~~~iVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-~~~G 398 (530)
.+...+.. ..+.++..-.||--.|+.-+..+.+. ...++.+..+.|.+..+.|.++++...+|+.+++|.|-+ +-..
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 34444443 34678999999977776666655443 234588999999999999999999999999999999975 5567
Q ss_pred CCCCCCCEEEE
Q 009641 399 MDVEGVNNVVN 409 (530)
Q Consensus 399 iDip~~~~VI~ 409 (530)
+++.++..||.
T Consensus 380 V~F~~LgLVIi 390 (677)
T COG1200 380 VEFHNLGLVII 390 (677)
T ss_pred eeecceeEEEE
Confidence 88888887775
No 387
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.91 E-value=0.62 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=17.1
Q ss_pred CCcEEEECCCCchHHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~ 90 (530)
++-.|+.||.|+|||.++-+.+
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3457899999999998765543
No 388
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.90 E-value=0.13 Score=48.38 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=26.2
Q ss_pred chhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHH
Q 009641 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~ 88 (530)
++..++....++..+..+.++++.||+|+|||..+..
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 4444555555555455688999999999999987543
No 389
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.90 E-value=1 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=17.1
Q ss_pred CCc-EEEECCCCchHHHHHHHHH
Q 009641 69 ERD-LCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 69 ~~~-~li~apTGsGKT~~~~~~~ 90 (530)
... +++.+|+|+|||.++...+
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA 45 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALA 45 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHH
Confidence 344 9999999999998765433
No 390
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.76 E-value=0.76 Score=44.60 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=15.0
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
..+++.||+|+|||.++.
T Consensus 39 ~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999998643
No 391
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.69 E-value=2.4 Score=39.82 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.4
Q ss_pred CcEEEECCCCchHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l 91 (530)
..+.+.+|+|+|||..+...+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5688999999999987655443
No 392
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.68 E-value=0.45 Score=44.12 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=17.9
Q ss_pred CCCCCCcEEEECCCCchHHHH
Q 009641 65 PGLFERDLCINSPTGSGKTLS 85 (530)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~ 85 (530)
++-.|+.+++.+|.|+|||..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH
Confidence 455789999999999999963
No 393
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=91.65 E-value=0.32 Score=55.62 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=47.7
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhc-CCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~-~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
.+.+++|.|..|||||++...-++..+... +..-..+||++.|++-+.++...+.+-.
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L 73 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRL 73 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHH
Confidence 468999999999999999888788887774 2344579999999999998888877654
No 394
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.57 E-value=0.55 Score=43.15 Aligned_cols=61 Identities=13% Similarity=0.045 Sum_probs=36.4
Q ss_pred HHHhc-CCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 59 WQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 59 ~~~~~-~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
++.++ ..+..|..+++.+++|+|||..+...+.+.+.. +.++++++- .+...++.+.++.+
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~----g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD----GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 34444 344567889999999999997655444444432 336777764 23344555554444
No 395
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.46 E-value=0.41 Score=49.95 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.5
Q ss_pred CcEEEECCCCchHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~ 89 (530)
+.+|+.||.|+|||..+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56899999999999876543
No 396
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.46 Score=49.67 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=37.2
Q ss_pred eCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCc
Q 009641 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 229 (530)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~ 229 (530)
+=|+++.+.+...+..+ -++++||+|.|.+...++.-..++..+....
T Consensus 402 amPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVLDPEQ 449 (782)
T COG0466 402 AMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVLDPEQ 449 (782)
T ss_pred cCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhcCHhh
Confidence 46999999998755433 3799999999988877788888888776543
No 397
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.40 E-value=0.76 Score=47.05 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=33.4
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEe
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~--Pt~~L~~Q~~~~l~~~~~~~~~~v~~~ 135 (530)
.++.+.+.+|||+|||......+....... .+.++.++. +.+.-+. +.++.+...+++.+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~--~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~a 413 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH--APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHEA 413 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCceEEEecccccccHH---HHHHHhhcccCceeEec
Confidence 467788999999999987654443322221 122455443 2333332 33444444445555443
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.38 E-value=0.78 Score=45.65 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=31.9
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc--CcHHHHHHHHHHHHHhccccCceE
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSV 132 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~--Pt~~L~~Q~~~~l~~~~~~~~~~v 132 (530)
.-+++.+|+|+|||.+....+...... .+.++.+++ +-|..+.. .++.++...++.+
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~---~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~ 282 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH---MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPF 282 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEecccchhhhHHH---HHHHHHHhcCCCe
Confidence 347789999999998876655443222 233455554 33454443 3344433345543
No 399
>PRK14701 reverse gyrase; Provisional
Probab=91.36 E-value=0.73 Score=54.26 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=55.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC---CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~ 394 (530)
.+.+++|.+||++.+.++.+.|..... .+..+..+||+++..++.+.++.+++|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999998886432 3467788999999999999999999999999999974
No 400
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.22 E-value=1.4 Score=38.12 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=29.4
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
++|.+++|||||.-+.-.+. . .+.+++|++....+-..+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~----~---~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAA----E---LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH----h---cCCCeEEEEccCcCCHHHHHHHHH
Confidence 57899999999975443322 2 234788987776665555555444
No 401
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.21 E-value=0.68 Score=42.37 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=38.8
Q ss_pred HHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 60 QETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 60 ~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
++++. .+..|..+++.+++|+|||...+-.+...+.. +.+++|++.. +-..|+.+.+..+
T Consensus 6 D~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~----g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 6 DEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN----GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC-CCHHHHHHHHHHc
Confidence 34443 34456779999999999997655445444433 3468887654 4466677777665
No 402
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.17 E-value=0.71 Score=48.92 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.2
Q ss_pred CcEEEECCCCchHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~ 89 (530)
+.+|+.||.|+|||.++.+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45799999999999876553
No 403
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.12 E-value=0.25 Score=54.56 Aligned_cols=35 Identities=20% Similarity=0.020 Sum_probs=23.6
Q ss_pred hhhHHHHHHhcCCCCC--------C---CcEEEECCCCchHHHHHH
Q 009641 53 PVQVAVWQETIGPGLF--------E---RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 53 ~~Q~~a~~~~~~~~~~--------~---~~~li~apTGsGKT~~~~ 87 (530)
..|..|+..+...+.. + ..+++.||||+|||..+-
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTK 557 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHH
Confidence 3688887766433221 1 147899999999997654
No 404
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.02 E-value=0.87 Score=44.75 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=27.2
Q ss_pred chhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
.+.=..+++.+ -++-+|+..+|.||.|+|||.... -+...+..
T Consensus 153 ~~~~~rvID~l-~PIGkGQR~lIvgppGvGKTTLaK-~Ian~I~~ 195 (416)
T PRK09376 153 EDLSTRIIDLI-APIGKGQRGLIVAPPKAGKTVLLQ-NIANSITT 195 (416)
T ss_pred cccceeeeeee-cccccCceEEEeCCCCCChhHHHH-HHHHHHHh
Confidence 34444555543 334568999999999999996432 24444443
No 405
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.87 E-value=0.2 Score=54.93 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=15.8
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.+..+++.+|+|+|||..+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999754
No 406
>PRK10436 hypothetical protein; Provisional
Probab=90.84 E-value=0.49 Score=48.13 Aligned_cols=48 Identities=31% Similarity=0.560 Sum_probs=29.3
Q ss_pred HHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhh
Q 009641 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (530)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~ 95 (530)
.|.++|| .+-|.+.+..++. ..+.-+++.+|||||||.+. ..++..+.
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~--~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQ--QPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHH--hcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 3456665 4445555544442 12456899999999999864 34555543
No 407
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.83 E-value=0.14 Score=47.18 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.3
Q ss_pred EEEECCCCchHHHH
Q 009641 72 LCINSPTGSGKTLS 85 (530)
Q Consensus 72 ~li~apTGsGKT~~ 85 (530)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 408
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.72 E-value=0.46 Score=42.24 Aligned_cols=64 Identities=23% Similarity=0.128 Sum_probs=37.7
Q ss_pred hcCCCC-CCCcEEEECCCCchHHHHHHHHHHHHhhhc------CCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 62 TIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 62 ~~~~~~-~~~~~li~apTGsGKT~~~~~~~l~~l~~~------~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
++..++ .|.-+++.||+|+|||...+-.+...+... ...+.+++++..-.. ..++.+.+.....
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred eECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 444444 456699999999999987655555444321 113457888876544 5567777776643
No 409
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.71 E-value=1.6 Score=44.56 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=56.7
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEe
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~ 178 (530)
.+.++||.|-|+.-|.++...++.. ++++..+||+.+..+....+. .+ ...+.|+|+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~------------------~FreG~~~vLVA 397 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLK------------------GFREGKSPVLVA 397 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHH------------------hcccCCcceEEE
Confidence 4558999999999999998888875 588999999998776644332 22 345799999
Q ss_pred CChHHHHHHhcCCCCCCCCccEEEE
Q 009641 179 TPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
| + +.. +++++.++++||-
T Consensus 398 T-----d-VAa-RGLDi~dV~lVIn 415 (519)
T KOG0331|consen 398 T-----D-VAA-RGLDVPDVDLVIN 415 (519)
T ss_pred c-----c-ccc-ccCCCccccEEEe
Confidence 9 2 222 5688888999983
No 410
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.52 E-value=0.4 Score=50.60 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=16.9
Q ss_pred CcEEEECCCCchHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~ 90 (530)
+..|+.||.|+|||.++.+.+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 458899999999998765543
No 411
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=0.83 Score=42.51 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=28.6
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~ 122 (530)
.+++.+|+|+||+..+ -++.. . .+ .+.+-+.+..|+..|.-+-.
T Consensus 168 giLLyGPPGTGKSYLA--KAVAT---E--An-STFFSvSSSDLvSKWmGESE 211 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLA--KAVAT---E--AN-STFFSVSSSDLVSKWMGESE 211 (439)
T ss_pred eEEEeCCCCCcHHHHH--HHHHh---h--cC-CceEEeehHHHHHHHhccHH
Confidence 4999999999999543 22221 1 11 47788888888766554433
No 412
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=90.37 E-value=2.1 Score=34.75 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=31.2
Q ss_pred CcEE--EECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc-----CcHHHHHHHHHHHHHh
Q 009641 70 RDLC--INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-----PTRDLALQVKDVFAAI 124 (530)
Q Consensus 70 ~~~l--i~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~-----Pt~~L~~Q~~~~l~~~ 124 (530)
+.++ +.|+||+|||.+.-+.+ +.+.....+..-+.... |....+.+-.+.++..
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA-~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIA-EHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHH-HHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 4444 79999999999887744 44444333333344433 5555555544455443
No 413
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.31 E-value=0.67 Score=45.70 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=25.2
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
+..+++++|||||||.. +..++..+.... ...+++.+=...+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~-~~~~IvtiEdp~E 190 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY-PDRKIVTYEDPIE 190 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC-CCceEEEEecCch
Confidence 45789999999999975 344555554321 2234555533333
No 414
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.30 E-value=0.73 Score=42.34 Aligned_cols=52 Identities=10% Similarity=-0.005 Sum_probs=33.0
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.+.-+++.+++|+|||..++..+...+. ++.++++++.. +-..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ----NGYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh----CCCcEEEEeCC-CCHHHHHHHHHHh
Confidence 4677999999999999864443443332 23468888843 3334555555544
No 415
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.28 E-value=1.4 Score=46.00 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=16.4
Q ss_pred CcEEEECCCCchHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~ 90 (530)
+-+|+.||.|+|||.++.+.+
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILA 59 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 346899999999998765533
No 416
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=90.21 E-value=0.95 Score=51.77 Aligned_cols=64 Identities=9% Similarity=0.287 Sum_probs=52.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC-Ccce---EEEccccCCHHHHHHHHHHHhcCCccEEEEecc
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIK---IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~-~~~~---v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~ 394 (530)
.+.+++|.+||++.+..+++.+..... .++. +..+||+++..++...++.+.+|..+|||+|+.
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 367899999999999999988876532 1222 346899999999999999999999999999983
No 417
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.17 E-value=2.4 Score=44.86 Aligned_cols=79 Identities=24% Similarity=0.330 Sum_probs=57.6
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
.+.++||.|+|+..++++++.|... ++.+..++|+.+..+....+. ..-....+|+|+|
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~-----------------~Fr~G~~~VLVaT 314 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLN-----------------RFQKGQLEILVAT 314 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEe
Confidence 3457999999999999999888765 788999999987665533221 1223457999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEech
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEa 206 (530)
+.+. .++++..+++||.-+.
T Consensus 315 -----dv~a--rGIDip~V~~VInyd~ 334 (572)
T PRK04537 315 -----DVAA--RGLHIDGVKYVYNYDL 334 (572)
T ss_pred -----hhhh--cCCCccCCCEEEEcCC
Confidence 3333 4678888998886544
No 418
>PHA02244 ATPase-like protein
Probab=90.16 E-value=0.2 Score=48.75 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=17.0
Q ss_pred CCCCcEEEECCCCchHHHHH
Q 009641 67 LFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~ 86 (530)
..+.++++.+|||+|||..+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred hcCCCEEEECCCCCCHHHHH
Confidence 35789999999999999754
No 419
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.14 E-value=2 Score=46.05 Aligned_cols=81 Identities=20% Similarity=0.376 Sum_probs=59.1
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEe
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~ 178 (530)
++.++||+++|+..+..+.+.+.+. |+++..++|+....+....+ ..+ ....+|+|+
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l------------------~~fr~G~i~VLV~ 498 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEII------------------RDLRLGEFDVLVG 498 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHH------------------HHHhcCCceEEEE
Confidence 4668999999999999888888775 78888888886654443221 122 245789998
Q ss_pred CChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
| +.+. .++++..+++||+-+++..
T Consensus 499 t-----~~L~--rGfDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 499 I-----NLLR--EGLDLPEVSLVAILDADKE 522 (655)
T ss_pred c-----Chhc--CCeeeCCCcEEEEeCcccc
Confidence 8 3333 4688889999998888764
No 420
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.09 E-value=1.4 Score=45.53 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.5
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+-.|+.||.|+|||.++..
T Consensus 37 hayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARI 55 (535)
T ss_pred eeEEEECCCCCcHHHHHHH
Confidence 4468999999999987654
No 421
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.03 E-value=0.3 Score=47.44 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=27.1
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
.+.+++|+|+||||||.. +-.++..+. ...+++.+=-+.+|
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip----~~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIP----AIERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCC----CCCeEEEecCCCcc
Confidence 468999999999999974 333444432 23356666555555
No 422
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.00 E-value=1.2 Score=41.13 Aligned_cols=89 Identities=13% Similarity=0.258 Sum_probs=64.8
Q ss_pred ceEEEccccCCHHHHHHHHHHHhcCC----ccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhh-cCCCCcc
Q 009641 360 IKIKEYSGLQRQSVRSKTLKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA-RAGQLGR 434 (530)
Q Consensus 360 ~~v~~~h~~~~~~~R~~~~~~f~~g~----~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~g-R~g~~g~ 434 (530)
+.+..++++.+... -.|.++. ..|+|+=+.++||+-++++.+.....-+.+.+++.||.-=.| |.|-.+.
T Consensus 111 ~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl 185 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDL 185 (239)
T ss_pred ceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccc
Confidence 66777776554422 2333333 789999999999999999999999999999999999853333 5555678
Q ss_pred EEEEeecchHHHHHHHHHH
Q 009641 435 CFTLLHKDEVKRFKKLLQK 453 (530)
Q Consensus 435 ~i~~~~~~~~~~~~~~~~~ 453 (530)
|=+|++++-...|..+...
T Consensus 186 ~Ri~~~~~l~~~f~~i~~~ 204 (239)
T PF10593_consen 186 CRIYMPEELYDWFRHIAEA 204 (239)
T ss_pred eEEecCHHHHHHHHHHHHH
Confidence 8888888766667666443
No 423
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=89.98 E-value=0.75 Score=43.20 Aligned_cols=56 Identities=14% Similarity=0.037 Sum_probs=37.1
Q ss_pred CCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
+-.|+.++|.+++|||||.-..-.+.+.+.. +-++++++-. +...++.+.+..+..
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~----ge~vlyvs~~-e~~~~l~~~~~~~g~ 75 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE----GEPVLYVSTE-ESPEELLENARSFGW 75 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc----CCcEEEEEec-CCHHHHHHHHHHcCC
Confidence 3457889999999999998544444443333 4467777643 556666777766543
No 424
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.93 E-value=0.36 Score=51.42 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=38.3
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.++++.||||||||..+++|.+-.+. ..+||+=|.-++........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC------CCEEEEeCCchHHHHHHHHHHhC
Confidence 47999999999999999999765432 25888889999887766665554
No 425
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.82 E-value=2.1 Score=40.90 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=32.2
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc-C-cHHHHHHHHHHHHHhccccCceEEE
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-P-TRDLALQVKDVFAAIAPAVGLSVGL 134 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~-P-t~~L~~Q~~~~l~~~~~~~~~~v~~ 134 (530)
+++.+..|+|||.+..- +..++.. .+.++++.+ - -|+=|.++.+.+-+ ..|..+..
T Consensus 142 il~vGVNG~GKTTTIaK-LA~~l~~---~g~~VllaA~DTFRAaAiEQL~~w~e---r~gv~vI~ 199 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK-LAKYLKQ---QGKSVLLAAGDTFRAAAIEQLEVWGE---RLGVPVIS 199 (340)
T ss_pred EEEEecCCCchHhHHHH-HHHHHHH---CCCeEEEEecchHHHHHHHHHHHHHH---HhCCeEEc
Confidence 77899999999987554 3333333 344566654 3 35555443333332 24666555
No 426
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.78 E-value=0.13 Score=53.83 Aligned_cols=63 Identities=24% Similarity=0.393 Sum_probs=49.2
Q ss_pred HHHHhcCCccEEEEecccccCCCCCCCCEE--------EEccCCCChhHHHHHHhhhhcCCCC-ccEEEEee
Q 009641 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNV--------VNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLLH 440 (530)
Q Consensus 378 ~~~f~~g~~~iLVaT~~~~~GiDip~~~~V--------I~~~~p~s~~~y~Qr~GR~gR~g~~-g~~i~~~~ 440 (530)
-++|-+|+-.|-|-+.+++-||-+..-+-| |-+.+|||.+.-+|..||+.|.++- +--++|+.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlI 921 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLI 921 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEe
Confidence 356778888888889999999999865434 4478999999999999999998765 44444444
No 427
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.75 E-value=0.85 Score=47.14 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=42.4
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+++++. .+..|+.++|.+|+|+|||.-++-.+.+.+.. .+.+++|++-- +-..++.+.+..++
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~---~ge~~lyvs~e-E~~~~l~~~~~~~G 73 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH---FDEPGVFVTFE-ESPQDIIKNARSFG 73 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEe-cCHHHHHHHHHHcC
Confidence 445554 45567889999999999998765555554443 13368888743 55566666777664
No 428
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.67 E-value=1 Score=48.09 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.1
Q ss_pred CcEEEECCCCchHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~ 89 (530)
+-+|+.||.|+|||.++.+.
T Consensus 41 HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 44789999999999876543
No 429
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=1.2 Score=46.10 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.5
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
..+.+|+.+|+|+|||+.+
T Consensus 467 ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCceEEEECCCCcchHHHH
Confidence 3578999999999999865
No 430
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.55 E-value=2.3 Score=42.02 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.3
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+.+++.||+|+|||..+..
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARI 55 (355)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4579999999999976543
No 431
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.54 E-value=1.1 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=17.3
Q ss_pred CCcEEEECCCCchHHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~ 90 (530)
.+.+|+.||.|+|||.++...+
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred CceEEEECCCCCChHHHHHHHH
Confidence 3568999999999998765533
No 432
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.54 E-value=0.82 Score=47.04 Aligned_cols=46 Identities=26% Similarity=0.454 Sum_probs=28.7
Q ss_pred HHHHCCCCccchhhHHHHHHhcCCCCCCC-cEEEECCCCchHHHHHHHHHHHHh
Q 009641 42 ALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~-~~li~apTGsGKT~~~~~~~l~~l 94 (530)
.|.++|| .+-|.+.+..++. ..+ -+++.+|||||||... ..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~---~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIR---RPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 4456675 4556655555443 233 4789999999999763 3345544
No 433
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.54 E-value=0.94 Score=44.23 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
...|.+.|+ +.+.+.+.+..++. .+.++++.++||||||... -.++..+. ...+.+++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~---~~~~ili~G~tGsGKTTll-~al~~~i~----~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVA---ARLAFLISGGTGSGKTTLL-SALLALVA----PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHH-HHHHccCC----CCCcEEEECCccee
Confidence 344455564 44566665555443 4679999999999999742 22333222 23366777666666
No 434
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.43 E-value=2.3 Score=46.29 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=16.7
Q ss_pred CCcEEEECCCCchHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~ 88 (530)
..++++.||+|+|||..+-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 46899999999999986543
No 435
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=89.42 E-value=3.4 Score=41.68 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=55.3
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVAT 179 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~T 179 (530)
.+.++|.+.++.=|+-+++.|.+. ++++..++|+.+.+.....+ +.+.. ..+|+|||
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL------------------~~fr~~t~dIlVaT 574 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENAL------------------ADFREGTGDILVAT 574 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHH------------------HHHHhcCCCEEEEe
Confidence 457999999999887777777765 79999999999877765443 33444 68999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEE
Q 009641 180 PGRLMDHINATRGFTLEHLCYLV 202 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lV 202 (530)
-- . ..++++.++++||
T Consensus 575 Dv-----A--gRGIDIpnVSlVi 590 (673)
T KOG0333|consen 575 DV-----A--GRGIDIPNVSLVI 590 (673)
T ss_pred cc-----c--ccCCCCCccceee
Confidence 32 1 2568888899888
No 436
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=89.28 E-value=0.57 Score=42.16 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=22.6
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
..+++|.++||||||......+...+.........+.++=|.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 458999999999999876554554444333334444444343
No 437
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.21 E-value=2.7 Score=42.87 Aligned_cols=101 Identities=13% Similarity=0.126 Sum_probs=73.2
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccC
Q 009641 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157 (530)
Q Consensus 78 TGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~ 157 (530)
.+.||+..-++.+.+.+..+ -.+.+||.+-+.+-|.|++..|. .+.++++.+++|..+.......+
T Consensus 366 vF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~--------- 431 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETM--------- 431 (593)
T ss_pred eeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHH---------
Confidence 57778777777666666554 34579999999999999998887 23479999999997655443322
Q ss_pred ccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechh
Q 009641 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (530)
Q Consensus 158 ~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 207 (530)
.+.-.....++||| +.+.+ ++++..+++||.++.-
T Consensus 432 --------~~FR~g~IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 432 --------ERFRIGKIWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred --------HHHhccCeeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 12223457999999 55554 5889999999997765
No 438
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.19 E-value=2.3 Score=47.37 Aligned_cols=79 Identities=10% Similarity=0.277 Sum_probs=67.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhc-CCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-ccccCCCCCCCCEEE
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-~~~~GiDip~~~~VI 408 (530)
.+.++.|.+||.-.|+.-++.+.++ .+.++++..+.--.+.++..++++..++|+++|+|.|- ++..+|-+.++.++|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4578999999999999888888753 35568888888888999999999999999999999994 778888888888877
Q ss_pred E
Q 009641 409 N 409 (530)
Q Consensus 409 ~ 409 (530)
.
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 6
No 439
>PF12846 AAA_10: AAA-like domain
Probab=89.16 E-value=0.69 Score=44.38 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=29.1
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~ 115 (530)
++++|.|+||+|||.... .++..+.. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~---~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR---RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH---cCCCEEEEcCCchHHH
Confidence 578999999999998765 44444444 3456788867655443
No 440
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=89.12 E-value=4.5 Score=38.68 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcc
Q 009641 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (530)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~ 226 (530)
.++..+.+ +...-+.--++|+||+|.+......-.+-++++...
T Consensus 123 ~lL~~L~~-~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq 166 (408)
T KOG2228|consen 123 KLLEALKK-GDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHhc-CCCCCCceEEEEeehhhccccchhhHHHHHHHHHHh
Confidence 34445544 222222234788999998877777777777776654
No 441
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.10 E-value=2.5 Score=38.59 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.5
Q ss_pred CCcEEEECCCCchHHHH
Q 009641 69 ERDLCINSPTGSGKTLS 85 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (530)
.+.+++.||-|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 35689999999999974
No 442
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.05 E-value=3.7 Score=41.65 Aligned_cols=48 Identities=10% Similarity=-0.110 Sum_probs=31.1
Q ss_pred HHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
.++.++..+..|.-+++.|+||+|||...+-.+...... .+.+++|++
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~---~g~~v~~fS 230 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR---EGKPVLFFS 230 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEE
Confidence 345556666667778999999999997554444333322 234677776
No 443
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.01 E-value=1.4 Score=45.38 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.2
Q ss_pred cEEEECCCCchHHHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~ 89 (530)
-.++.||.|+|||.++.+.
T Consensus 40 ayLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3688999999999876543
No 444
>PRK08760 replicative DNA helicase; Provisional
Probab=88.86 E-value=2.7 Score=43.23 Aligned_cols=61 Identities=10% Similarity=-0.166 Sum_probs=35.9
Q ss_pred HHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 60 ~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
+.+...+..|.-++|.|.||.|||...+-.+...... .+..++|++.-. -..|+...+...
T Consensus 220 D~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~---~g~~V~~fSlEM-s~~ql~~Rl~a~ 280 (476)
T PRK08760 220 DAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK---SKKGVAVFSMEM-SASQLAMRLISS 280 (476)
T ss_pred HHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh---cCCceEEEeccC-CHHHHHHHHHHh
Confidence 4455555556668899999999997554434333322 233577776432 234555555443
No 445
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.85 E-value=0.51 Score=49.40 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.9
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+-+|+.||.|+|||.++.+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4589999999999987654
No 446
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.84 E-value=3.2 Score=41.08 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=24.6
Q ss_pred EEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 73 li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
++.++.|+|||.+....++..+.... ....+++. |+..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-~~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-PGRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-S--EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-CCcEEEEe-cCHHHHHH
Confidence 47789999999988777777766543 22355555 65554444
No 447
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=88.84 E-value=3.4 Score=36.88 Aligned_cols=75 Identities=16% Similarity=0.315 Sum_probs=52.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC-CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----cccC-CCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-MDVEG 403 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-iDip~ 403 (530)
.+.++||.++++..+...++.+..... .+..+..++|+.+..++...++ +...|+|+|.- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999999998887765432 3467788899888765543332 67899999952 2233 56667
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 777664
No 448
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.77 E-value=1.9 Score=42.21 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=29.1
Q ss_pred hhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
++-.++++.+++ +-+|+..+|.||.|+|||..... ++..+..
T Consensus 118 ~~~~RvID~l~P-iGkGQR~LIvG~pGtGKTTLl~~-la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQ-IAAAVAA 159 (380)
T ss_pred chhHhhhhheee-cCCCceEEEECCCCCCHHHHHHH-HHHHHHh
Confidence 455567776553 44789999999999999976433 4444443
No 449
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.75 E-value=0.99 Score=46.04 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.3
Q ss_pred CcEEEECCCCchHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~ 89 (530)
+.+|+.||+|+|||.++...
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 45889999999999876543
No 450
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.73 E-value=2.5 Score=47.78 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=21.6
Q ss_pred CccEEEEechhHhhhHhhhhHHHHHHhhcc
Q 009641 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (530)
Q Consensus 197 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~ 226 (530)
.--+||||++|.+.+......+..++...+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~ 150 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCC
Confidence 345899999999866665666777766543
No 451
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.73 E-value=0.64 Score=48.91 Aligned_cols=82 Identities=21% Similarity=0.159 Sum_probs=52.5
Q ss_pred ccchhhHHHHHHhcC---CCC-CC--CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIG---PGL-FE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~---~~~-~~--~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
.+...|.+|+-+... .++ .| -.+||-..-|.||-.+..-.++++..++ ..++|.+.-+..|--+..+.++.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG---RKrAlW~SVSsDLKfDAERDL~D 340 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG---RKRALWFSVSSDLKFDAERDLRD 340 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc---cceeEEEEeccccccchhhchhh
Confidence 567778777755431 111 23 2477766667766554444467777664 34799999888998777788888
Q ss_pred hccccCceEEEe
Q 009641 124 IAPAVGLSVGLA 135 (530)
Q Consensus 124 ~~~~~~~~v~~~ 135 (530)
.+.. ++.|..+
T Consensus 341 igA~-~I~V~al 351 (1300)
T KOG1513|consen 341 IGAT-GIAVHAL 351 (1300)
T ss_pred cCCC-Cccceeh
Confidence 7543 4655543
No 452
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=88.72 E-value=0.45 Score=49.63 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=35.5
Q ss_pred EEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccC
Q 009641 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228 (530)
Q Consensus 176 li~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~ 228 (530)
+=+-|+++.+.|.+-+.- --++.|||+|.+.+...++.-..++..+...
T Consensus 488 VGAMPGkiIq~LK~v~t~----NPliLiDEvDKlG~g~qGDPasALLElLDPE 536 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVKTE----NPLILIDEVDKLGSGHQGDPASALLELLDPE 536 (906)
T ss_pred eccCChHHHHHHHhhCCC----CceEEeehhhhhCCCCCCChHHHHHHhcChh
Confidence 345799999999874432 3479999999998555566677777776543
No 453
>PHA00350 putative assembly protein
Probab=88.66 E-value=0.98 Score=44.70 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=18.3
Q ss_pred EEEECCCCchHHHHHHH-HHHHHhhh
Q 009641 72 LCINSPTGSGKTLSYAL-PIVQTLSN 96 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~-~~l~~l~~ 96 (530)
.++.|.+|||||+.++- .++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 57899999999987665 35555544
No 454
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.63 E-value=0.87 Score=47.95 Aligned_cols=47 Identities=32% Similarity=0.468 Sum_probs=29.7
Q ss_pred HHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHh
Q 009641 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 42 ~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l 94 (530)
.|.++|| .+-|.+.+..++. .....+++.||||||||.+. ..++..+
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~--~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIH--KPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 3567776 3455555544443 12345889999999999863 4455554
No 455
>PRK07004 replicative DNA helicase; Provisional
Probab=88.61 E-value=1.8 Score=44.37 Aligned_cols=46 Identities=11% Similarity=-0.161 Sum_probs=28.2
Q ss_pred HHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 60 ~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+.+...+..|.-+++.|.||+|||..++-.+...... .+..+++++
T Consensus 204 D~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~---~~~~v~~fS 249 (460)
T PRK07004 204 DRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE---YGLPVAVFS 249 (460)
T ss_pred cccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH---cCCeEEEEe
Confidence 4445555556668899999999997544333333222 233577765
No 456
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.53 E-value=3.2 Score=39.54 Aligned_cols=94 Identities=16% Similarity=0.234 Sum_probs=62.5
Q ss_pred HHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc
Q 009641 91 VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (530)
Q Consensus 91 l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (530)
..++......+..+++.+|+.+.++|.+..++...+. ..+..+++......+...-. -.
T Consensus 295 ~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~--~~i~~Vhs~d~~R~EkV~~f-------------------R~ 353 (441)
T COG4098 295 KRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK--ETIASVHSEDQHRKEKVEAF-------------------RD 353 (441)
T ss_pred HHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc--cceeeeeccCccHHHHHHHH-------------------Hc
Confidence 3444444445667999999999999999999766543 45555555554333322211 12
Q ss_pred CCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhH
Q 009641 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (530)
Q Consensus 171 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~ 212 (530)
...+|+|+| ..|++ ++.+.+++++|++--|++...
T Consensus 354 G~~~lLiTT-----TILER--GVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 354 GKITLLITT-----TILER--GVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred CceEEEEEe-----ehhhc--ccccccceEEEecCCcccccH
Confidence 346899998 34554 577889999999988877543
No 457
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=88.53 E-value=0.21 Score=44.40 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=13.7
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.++++++.+|+|+|||..+
T Consensus 21 G~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp CC--EEEES-CCCTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 4689999999999999753
No 458
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.52 E-value=2.7 Score=46.03 Aligned_cols=38 Identities=16% Similarity=-0.033 Sum_probs=23.3
Q ss_pred cchhhHHHHHHhcCCCC--CCCcEEEECCCCchHHHHHHH
Q 009641 51 LFPVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~--~~~~~li~apTGsGKT~~~~~ 88 (530)
|--.|..-+..++..+. ...++++.||+|+|||..+-.
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 33345444444333221 246899999999999986543
No 459
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.47 E-value=0.41 Score=45.25 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=28.7
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
.+.++++.|+||||||... ..++..+... ..+++++-.+.++
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~~---~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPPE---DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHTT---TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhcccc---ccceEEeccccce
Confidence 3678999999999999753 4455554432 2467777766665
No 460
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.39 E-value=1.8 Score=47.98 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.4
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.||||+|||..+-
T Consensus 598 ~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999998654
No 461
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.39 E-value=1.2 Score=51.53 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=45.3
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
.++++|.|+-|||||.+..--++..+..+. ...++++|+-|+.-+.++.+.+...+.
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~-~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGV-PPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCC-CCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 578999999999999987766666665543 345899999999999998887776543
No 462
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=88.34 E-value=2.9 Score=40.40 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=15.8
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+..++.||.|+||+..+..
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~ 45 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALC 45 (314)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5689999999999976544
No 463
>PRK06904 replicative DNA helicase; Validated
Probab=88.14 E-value=4.1 Score=41.88 Aligned_cols=61 Identities=13% Similarity=-0.035 Sum_probs=34.9
Q ss_pred HHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 59 ~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
++.+...+..|.=+++.|.||.|||..+ +-+....... .+..++|++.- .-..|+...+-.
T Consensus 211 LD~~t~Gl~~G~LiiIaarPg~GKTafa-lnia~~~a~~--~g~~Vl~fSlE-Ms~~ql~~Rlla 271 (472)
T PRK06904 211 LDKKTAGLQPSDLIIVAARPSMGKTTFA-MNLCENAAMA--SEKPVLVFSLE-MPAEQIMMRMLA 271 (472)
T ss_pred HHHHHhccCCCcEEEEEeCCCCChHHHH-HHHHHHHHHh--cCCeEEEEecc-CCHHHHHHHHHH
Confidence 3444555555666888999999999754 3333333221 23457777643 334455554443
No 464
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=88.12 E-value=0.45 Score=33.19 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.7
Q ss_pred CCcEEEECCCCchHHHH
Q 009641 69 ERDLCINSPTGSGKTLS 85 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (530)
+...++.+|+|||||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45799999999999975
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.05 E-value=0.97 Score=46.69 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=43.0
Q ss_pred HHHHHhcCC-CCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 57 AVWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 57 ~a~~~~~~~-~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
..++.++.. +..|.-+++.+|+|+|||...+..+.+.+.. +.+++|++ .-+-..|+...++.+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~----ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN----KERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEE-eeCCHHHHHHHHHHc
Confidence 445555543 4456779999999999998665555544433 44788887 446677777777776
No 466
>PRK08506 replicative DNA helicase; Provisional
Probab=88.04 E-value=3.4 Score=42.46 Aligned_cols=61 Identities=13% Similarity=-0.112 Sum_probs=37.0
Q ss_pred HHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
.++.+...+..|.-+++.|.||.|||..++-.+.+.. . .+.+++|++.- .-..|+...+-.
T Consensus 181 ~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~-~---~g~~V~~fSlE-Ms~~ql~~Rlla 241 (472)
T PRK08506 181 ELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKAL-N---QDKGVAFFSLE-MPAEQLMLRMLS 241 (472)
T ss_pred HHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHH-h---cCCcEEEEeCc-CCHHHHHHHHHH
Confidence 3444555555566788999999999986554444433 2 24467777643 334555555433
No 467
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.97 E-value=1.2 Score=47.29 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=15.9
Q ss_pred CcEEEECCCCchHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALP 89 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~ 89 (530)
+-+|++||.|+|||.++.+.
T Consensus 40 hayLf~Gp~G~GKtt~A~~l 59 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCARIF 59 (614)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 44899999999999865543
No 468
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.90 E-value=0.4 Score=46.94 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=18.5
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhh
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~ 95 (530)
..|+|+.+|||||||+.+. .+.++.
T Consensus 226 KSNvLllGPtGsGKTllaq--TLAr~l 250 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQ--TLARVL 250 (564)
T ss_pred cccEEEECCCCCchhHHHH--HHHHHh
Confidence 4689999999999998543 344443
No 469
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.85 E-value=2 Score=45.87 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=53.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC--CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----ccccC-CCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVE 402 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iDip 402 (530)
...++||.||+++.|..+++.+..... .++.+..+||+.+...+...+ + +...|+|+|+ .+.++ +++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchh
Confidence 345789999999999999888775422 247788889988765544333 2 4578999995 33343 6777
Q ss_pred CCCEEEE
Q 009641 403 GVNNVVN 409 (530)
Q Consensus 403 ~~~~VI~ 409 (530)
++.+||.
T Consensus 149 ~l~~lVl 155 (629)
T PRK11634 149 KLSGLVL 155 (629)
T ss_pred hceEEEe
Confidence 7777664
No 470
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.69 E-value=1.6 Score=43.47 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.5
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+.+++.||+|+|||..+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARI 58 (367)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999976543
No 471
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.67 E-value=0.89 Score=41.04 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=27.5
Q ss_pred CCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
..|.-+.+.+|+|+|||...+..+.+.... +.+++|+.-.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~----g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQ----GKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 346678999999999998765544444332 3467777654
No 472
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=87.62 E-value=0.71 Score=46.58 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=32.3
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
..+++++.|+||||||.. +..++..+... +.+++|+=|.-++...
T Consensus 41 ~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~---~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQ-IRELLASIRAR---GDRAIIYDPNGGFVSK 85 (410)
T ss_pred hhccEEEEcCCCCCHHHH-HHHHHHHHHhc---CCCEEEEeCCcchhHh
Confidence 357899999999999975 44455555442 3478888898886543
No 473
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=87.60 E-value=0.64 Score=49.41 Aligned_cols=57 Identities=19% Similarity=0.101 Sum_probs=41.1
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEee
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~ 136 (530)
..+++.||||+|||..+++|.+-.. +..++|+=|.-|+........++. |-+|.++.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~------~gS~VV~DpKgEl~~~Ta~~R~~~----G~~V~vfd 281 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW------GGPLVVLDPSTEVAPMVSEHRRDA----GREVIVLD 281 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEe
Confidence 5799999999999999999975322 125788889999887666655554 44554443
No 474
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=87.51 E-value=1.2 Score=40.76 Aligned_cols=47 Identities=23% Similarity=0.138 Sum_probs=30.4
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
++.++. .+..|.-+++.+++|+|||...+..+.+.+.. +.+++|+.-
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~----~~~v~yi~~ 59 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN----GKKVIYIDT 59 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEEC
Confidence 444553 33346678999999999998765555544432 346777753
No 475
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.51 E-value=1.4 Score=47.14 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.9
Q ss_pred ccEEEEechhHhhhHhhhhHHHHHHhhccc
Q 009641 198 LCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (530)
Q Consensus 198 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~ 227 (530)
.-++|+|+-|.+.+.....-++.++++.+.
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~ 159 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPE 159 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCC
Confidence 468999999999888888888888887653
No 476
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.32 E-value=2.8 Score=42.82 Aligned_cols=61 Identities=16% Similarity=0.112 Sum_probs=37.9
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
++.++. .+..|.-+++.+++|+|||...+..+ ..+.. .+.+++|+..- +-..|+.....++
T Consensus 83 LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a-~~~a~---~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 83 LDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVA-CQLAK---NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred HHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHH-HHHHh---cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 444453 34456678999999999998654433 33333 23478888764 4456666555554
No 477
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=87.28 E-value=2.1 Score=41.34 Aligned_cols=52 Identities=10% Similarity=-0.179 Sum_probs=30.3
Q ss_pred HHHhcCC-CCCCCcEEEECCCCchHHHHHHHHHHHHhhh--cCCCcccEEEEcCc
Q 009641 59 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSN--RAVRCLRALVVLPT 110 (530)
Q Consensus 59 ~~~~~~~-~~~~~~~li~apTGsGKT~~~~~~~l~~l~~--~~~~~~~~lil~Pt 110 (530)
++.++.. +..|.-+.+.+|+|+|||...+..++..... ....+.+++|+.--
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE 139 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTE 139 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcC
Confidence 4444443 3334557799999999998665444433221 01123478888743
No 478
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.18 E-value=0.71 Score=44.55 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.+.++++.+|||||||..
T Consensus 143 ~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF 160 (308)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478999999999999974
No 479
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=87.15 E-value=6.3 Score=40.55 Aligned_cols=73 Identities=14% Similarity=0.263 Sum_probs=54.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCC--CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----ccc-cCCCCCCC
Q 009641 333 EKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGV 404 (530)
Q Consensus 333 ~~~iVf~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~-~GiDip~~ 404 (530)
.++||.+||++.|..+++.+..... .+..+..++|+.+...+...++ +..+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 3689999999999999988876432 2478888999988765544333 5689999995 333 34788888
Q ss_pred CEEEE
Q 009641 405 NNVVN 409 (530)
Q Consensus 405 ~~VI~ 409 (530)
++||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88775
No 480
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=86.91 E-value=1.9 Score=40.38 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=17.5
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhh
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
+-+.++||+||.++.-+ +.+++..
T Consensus 113 LSfHG~tGTGKN~Va~i-iA~n~~~ 136 (344)
T KOG2170|consen 113 LSFHGWTGTGKNYVAEI-IAENLYR 136 (344)
T ss_pred EEecCCCCCchhHHHHH-HHHHHHh
Confidence 33689999999998876 4444444
No 481
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=86.87 E-value=0.54 Score=50.08 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=38.6
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.++++.||||||||..+++|.+-.+. ..+||+=|.-++........++.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~------~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWP------GSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCC------CCEEEEeCcchHHHHHHHHHHhC
Confidence 67999999999999999999775542 15888889999887666665543
No 482
>PRK08006 replicative DNA helicase; Provisional
Probab=86.78 E-value=5.7 Score=40.79 Aligned_cols=60 Identities=8% Similarity=-0.150 Sum_probs=34.7
Q ss_pred HHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHH
Q 009641 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (530)
Q Consensus 59 ~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~ 122 (530)
++.++..+..|.-+++.|.||.|||.-++-.+...... .+..++|++.- .-..|+...+-
T Consensus 214 LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~---~g~~V~~fSlE-M~~~ql~~Rll 273 (471)
T PRK08006 214 LNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML---QDKPVLIFSLE-MPGEQIMMRML 273 (471)
T ss_pred HHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---cCCeEEEEecc-CCHHHHHHHHH
Confidence 34455555556668889999999997544434333322 23457777643 22344444443
No 483
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=86.75 E-value=1.5 Score=46.68 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=35.8
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH--HHHHHHHHHHHhc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVKDVFAAIA 125 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~--L~~Q~~~~l~~~~ 125 (530)
..+++|.|+||+|||..+...+.+.+.. +..++++=|--. |...+...++..+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~----g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR----GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 4789999999999998765544444443 335667667754 6666666666653
No 484
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=86.58 E-value=6.2 Score=33.81 Aligned_cols=75 Identities=12% Similarity=0.232 Sum_probs=53.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC-CcceEEEccccCCHH-HHHHHHHHHhcCCccEEEEecc-----c-ccCCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQS-VRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVE 402 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~-~R~~~~~~f~~g~~~iLVaT~~-----~-~~GiDip 402 (530)
...++|+.++++..++.+.+.+..... .+..+..+|++.+.. +....+ .+..+|+|+|.. + ...+++.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~ 118 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINIS 118 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGT
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccc
Confidence 445999999999999999998887653 346788889888744 222223 677999999972 2 2234666
Q ss_pred CCCEEEE
Q 009641 403 GVNNVVN 409 (530)
Q Consensus 403 ~~~~VI~ 409 (530)
.+++||.
T Consensus 119 ~~~~iVi 125 (169)
T PF00270_consen 119 RLSLIVI 125 (169)
T ss_dssp TESEEEE
T ss_pred cceeecc
Confidence 6676664
No 485
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=86.55 E-value=2.7 Score=40.95 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=15.2
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
+-.++.||.|.|||..+..
T Consensus 29 ha~Lf~G~~G~gk~~~a~~ 47 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALW 47 (329)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3469999999999976544
No 486
>PHA00012 I assembly protein
Probab=86.54 E-value=1.2 Score=42.38 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhh
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
-++.|..|||||+.++.-+...+..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5789999999999887766666655
No 487
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=86.51 E-value=1 Score=40.34 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=22.6
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
+++.+|||||||... ..++..+... .+.+++.+--..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~--~~~~i~t~e~~~E 41 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN--KTHHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc--CCcEEEEEcCCcc
Confidence 789999999999864 3344444322 2234555544334
No 488
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.48 E-value=4.5 Score=41.06 Aligned_cols=76 Identities=26% Similarity=0.287 Sum_probs=54.9
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
..++||.|+++.-++.+++.+... ++++..++|+....++...+. ..-....+|+|+|
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLVaT- 312 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILE-----------------EFTRGDLDILVAT- 312 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHH-----------------HHHcCCCcEEEEe-
Confidence 347999999999999888888764 789999999987665533221 1223457999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEe
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVD 204 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViD 204 (530)
+.+. .++++.++++||.-
T Consensus 313 ----dv~~--rGiDip~v~~VI~~ 330 (423)
T PRK04837 313 ----DVAA--RGLHIPAVTHVFNY 330 (423)
T ss_pred ----chhh--cCCCccccCEEEEe
Confidence 2333 46788888888754
No 489
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=86.42 E-value=5 Score=40.92 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=54.7
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
..++||.|++++-+..+++.|... ++.+..++|+.+..+....+. +.-....+|+|+|
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~-----------------~f~~G~~~vLVaT- 302 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIK-----------------RLTDGRVNVLVAT- 302 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHH-----------------HHhCCCCcEEEEc-
Confidence 457999999999999998888764 788999999887666543321 1223457999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEE
Q 009641 181 GRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
+.+. .++++.++++||.
T Consensus 303 ----d~~~--~GiDip~v~~VI~ 319 (434)
T PRK11192 303 ----DVAA--RGIDIDDVSHVIN 319 (434)
T ss_pred ----cccc--cCccCCCCCEEEE
Confidence 2222 4677888888883
No 490
>PTZ00110 helicase; Provisional
Probab=86.40 E-value=4.7 Score=42.43 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=54.9
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEe
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~ 178 (530)
.+.++||.|+++.-|+.+++.++.. ++.+..++|+....++... ...+. ....|+|+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~i------------------l~~F~~G~~~ILVa 433 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWV------------------LNEFKTGKSPIMIA 433 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHH------------------HHHHhcCCCcEEEE
Confidence 3458999999999999988888754 6788899998876655332 22222 35689999
Q ss_pred CChHHHHHHhcCCCCCCCCccEEEEe
Q 009641 179 TPGRLMDHINATRGFTLEHLCYLVVD 204 (530)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~lViD 204 (530)
|. .+. .++++.++++||.-
T Consensus 434 Td-----v~~--rGIDi~~v~~VI~~ 452 (545)
T PTZ00110 434 TD-----VAS--RGLDVKDVKYVINF 452 (545)
T ss_pred cc-----hhh--cCCCcccCCEEEEe
Confidence 92 333 46788889988853
No 491
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=86.39 E-value=1.9 Score=37.78 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=16.2
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~ 97 (530)
++.+++.|+.|+|||... -.++..+...
T Consensus 24 ~~~~ll~G~~G~GKT~ll-~~~~~~~~~~ 51 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLL-RALLDRLAER 51 (185)
T ss_dssp ---EEE-B-TTSSHHHHH-HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHhc
Confidence 467999999999999753 3355555543
No 492
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=86.36 E-value=1.1 Score=41.07 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=29.8
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
++.+.|.|.||||||..... +++.+.. ..+.+++|+=|.-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~--~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLK--KKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHh--cCCCCEEEEcCCCc
Confidence 57899999999999986544 5666653 13457888877755
No 493
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=86.12 E-value=0.88 Score=48.12 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=37.8
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
..+++.||||||||..+++|.+-.. +..++|+=|.-++.......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 5799999999999999999965332 125888889999987766555554
No 494
>PRK13531 regulatory ATPase RavA; Provisional
Probab=86.06 E-value=0.52 Score=47.73 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=26.7
Q ss_pred hhHHHHHHhcCCCCCCCcEEEECCCCchHHHHH
Q 009641 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 54 ~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (530)
-|.+++..++-.++.+.++++.+|+|+|||..+
T Consensus 24 gre~vI~lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 24 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred CcHHHHHHHHHHHccCCCEEEECCCChhHHHHH
Confidence 466666666666678999999999999999864
No 495
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=86.04 E-value=15 Score=29.67 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=53.9
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEe
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~ 178 (530)
.+.++||.+++..-++++.+.+.+ .+..+..++|+.+..+.... ...+. ....|+++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~------------------~~~f~~~~~~ili~ 84 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEV------------------LKDFREGEIVVLVA 84 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHH------------------HHHHHcCCCcEEEE
Confidence 345799999999999988888877 36778889988774443221 12222 33589998
Q ss_pred CChHHHHHHhcCCCCCCCCccEEEEechh
Q 009641 179 TPGRLMDHINATRGFTLEHLCYLVVDETD 207 (530)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~lViDEah 207 (530)
|.. +. .++++...+.+|+....
T Consensus 85 t~~-----~~--~G~d~~~~~~vi~~~~~ 106 (131)
T cd00079 85 TDV-----IA--RGIDLPNVSVVINYDLP 106 (131)
T ss_pred cCh-----hh--cCcChhhCCEEEEeCCC
Confidence 842 11 45667778888877764
No 496
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=86.03 E-value=1.1 Score=44.89 Aligned_cols=46 Identities=26% Similarity=0.373 Sum_probs=31.0
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (530)
.+++++.|.||||||.+ +..++..+... +-++||.=|.-+.....+
T Consensus 15 ~~~~li~G~~GsGKT~~-i~~ll~~~~~~---g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 15 NRHILIIGATGSGKTQA-IRHLLDQIRAR---GDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp GG-EEEEE-TTSSHHHH-HHHHHHHHHHT---T-EEEEEEETTHHHHHH-
T ss_pred hCcEEEECCCCCCHHHH-HHHHHHHHHHc---CCEEEEEECCchHHHHhc
Confidence 57899999999999974 56677777653 446788778877654433
No 497
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=85.97 E-value=1 Score=41.26 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=23.9
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
-+++|.|++|||||.. ++-++..+... -..+++++|
T Consensus 14 fr~viIG~sGSGKT~l-i~~lL~~~~~~---f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTL-IKSLLYYLRHK---FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHhhccc---CCEEEEEec
Confidence 3799999999999974 44455444332 235666667
No 498
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=85.88 E-value=4.5 Score=41.06 Aligned_cols=80 Identities=18% Similarity=0.408 Sum_probs=62.0
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEe
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVA 178 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~ 178 (530)
.+-++||.+=|+-.|+++.+.+.+. |+++..++++...-+.. ++.+.++. ..||+|+
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~----gikv~YlHSdidTlER~------------------eIirdLR~G~~DvLVG 502 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKEL----GIKVRYLHSDIDTLERV------------------EIIRDLRLGEFDVLVG 502 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhc----CceEEeeeccchHHHHH------------------HHHHHHhcCCccEEEe
Confidence 4568999999999888777777665 89999999988766653 33445555 4899999
Q ss_pred CChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 179 TPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
- ++|+. ++++..+++|.|=+||.
T Consensus 503 I-----NLLRE--GLDiPEVsLVAIlDADK 525 (663)
T COG0556 503 I-----NLLRE--GLDLPEVSLVAILDADK 525 (663)
T ss_pred e-----hhhhc--cCCCcceeEEEEeecCc
Confidence 6 66664 68888999999988984
No 499
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.87 E-value=2.8 Score=46.50 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.7
Q ss_pred CCcEEEECCCCchHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~ 88 (530)
..++++.||+|+|||..+-.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 46899999999999987544
No 500
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.85 E-value=2.9 Score=46.60 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.1
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
..+.++.||+|+|||...-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 4689999999999997654
Done!