Query 009641
Match_columns 530
No_of_seqs 267 out of 2635
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 09:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.7E-60 2.6E-64 477.9 40.9 364 18-454 52-420 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3E-56 1E-60 451.7 37.8 369 18-456 11-397 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 6.7E-56 2.3E-60 448.0 38.5 360 22-456 37-397 (410)
4 1s2m_A Putative ATP-dependent 100.0 1.1E-54 3.7E-59 437.8 39.5 360 21-456 20-379 (400)
5 1xti_A Probable ATP-dependent 100.0 4.2E-54 1.4E-58 432.2 42.1 361 22-455 8-371 (391)
6 3eiq_A Eukaryotic initiation f 100.0 6.5E-55 2.2E-59 441.6 36.2 356 34-456 46-401 (414)
7 3pey_A ATP-dependent RNA helic 100.0 3.2E-54 1.1E-58 433.7 38.0 381 21-479 4-392 (395)
8 3fht_A ATP-dependent RNA helic 100.0 3.8E-54 1.3E-58 435.7 35.8 362 19-455 22-393 (412)
9 3sqw_A ATP-dependent RNA helic 100.0 3.4E-53 1.2E-57 445.3 36.2 369 34-455 27-411 (579)
10 3i5x_A ATP-dependent RNA helic 100.0 1.2E-52 4.1E-57 441.1 37.8 369 34-455 78-462 (563)
11 1hv8_A Putative ATP-dependent 100.0 2.7E-52 9.1E-57 415.4 37.5 353 22-455 6-358 (367)
12 1fuu_A Yeast initiation factor 100.0 3E-54 1E-58 433.7 20.7 359 21-455 20-379 (394)
13 3fmp_B ATP-dependent RNA helic 100.0 1.5E-54 5E-59 446.4 18.4 358 21-453 91-458 (479)
14 2z0m_A 337AA long hypothetical 100.0 6E-51 2.1E-55 400.8 34.6 334 35-454 1-334 (337)
15 1oyw_A RECQ helicase, ATP-depe 100.0 2.7E-50 9.3E-55 415.3 31.9 348 22-453 2-354 (523)
16 2v1x_A ATP-dependent DNA helic 100.0 2.9E-50 9.9E-55 418.9 28.9 336 34-451 27-383 (591)
17 3fho_A ATP-dependent RNA helic 100.0 3.3E-51 1.1E-55 422.5 20.0 352 34-455 125-484 (508)
18 3oiy_A Reverse gyrase helicase 100.0 2.6E-48 9.1E-53 392.5 30.7 340 37-454 8-375 (414)
19 2zj8_A DNA helicase, putative 100.0 3.5E-45 1.2E-49 393.8 32.4 337 34-445 7-390 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 1.2E-44 4.2E-49 389.9 35.9 342 20-443 6-409 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 1.8E-45 6E-50 395.1 25.2 336 35-444 10-390 (702)
22 4ddu_A Reverse gyrase; topoiso 100.0 1.3E-44 4.4E-49 399.3 31.9 362 45-482 74-531 (1104)
23 4a2p_A RIG-I, retinoic acid in 100.0 1.5E-44 5.1E-49 379.8 30.4 340 46-446 3-512 (556)
24 1tf5_A Preprotein translocase 100.0 1.7E-44 5.9E-49 374.8 29.6 357 45-443 79-546 (844)
25 3l9o_A ATP-dependent RNA helic 100.0 7.9E-45 2.7E-49 401.1 28.6 335 35-452 169-608 (1108)
26 2ykg_A Probable ATP-dependent 100.0 3.3E-45 1.1E-49 394.4 24.3 349 39-447 2-521 (696)
27 1gku_B Reverse gyrase, TOP-RG; 100.0 5.8E-45 2E-49 402.5 26.2 364 41-482 48-494 (1054)
28 3tbk_A RIG-I helicase domain; 100.0 1.9E-44 6.5E-49 379.0 24.1 338 50-447 4-512 (555)
29 4a2q_A RIG-I, retinoic acid in 100.0 2.1E-43 7.2E-48 383.6 30.0 340 45-445 243-752 (797)
30 2xgj_A ATP-dependent RNA helic 100.0 5.2E-43 1.8E-47 383.4 32.2 327 43-452 80-510 (1010)
31 4f92_B U5 small nuclear ribonu 100.0 2.1E-42 7.3E-47 394.3 33.3 355 34-452 910-1318(1724)
32 1wp9_A ATP-dependent RNA helic 100.0 4.3E-42 1.5E-46 355.2 31.9 323 50-445 9-478 (494)
33 4a2w_A RIG-I, retinoic acid in 100.0 1E-42 3.6E-47 381.6 25.9 341 44-445 242-752 (936)
34 4f92_B U5 small nuclear ribonu 100.0 7.6E-43 2.6E-47 398.0 24.9 354 34-453 65-484 (1724)
35 1gm5_A RECG; helicase, replica 100.0 2.2E-42 7.5E-47 366.8 25.1 330 35-442 354-697 (780)
36 4a4z_A Antiviral helicase SKI2 100.0 7.7E-42 2.6E-46 374.2 28.4 329 44-452 34-504 (997)
37 2fsf_A Preprotein translocase 100.0 5.2E-42 1.8E-46 355.1 25.2 356 46-443 71-584 (853)
38 1nkt_A Preprotein translocase 100.0 4.7E-41 1.6E-45 348.2 29.2 369 45-455 107-637 (922)
39 4gl2_A Interferon-induced heli 100.0 1.7E-41 5.9E-46 365.6 21.8 337 50-441 7-517 (699)
40 2eyq_A TRCF, transcription-rep 100.0 2.4E-40 8.1E-45 367.7 31.3 330 35-443 588-923 (1151)
41 2whx_A Serine protease/ntpase/ 100.0 7.1E-41 2.4E-45 349.3 16.5 311 35-452 157-491 (618)
42 2oca_A DAR protein, ATP-depend 100.0 4.2E-40 1.4E-44 341.5 21.0 310 50-440 113-453 (510)
43 2jlq_A Serine protease subunit 100.0 3.6E-40 1.2E-44 334.4 20.0 289 47-442 1-311 (451)
44 2fwr_A DNA repair protein RAD2 100.0 4.7E-40 1.6E-44 337.8 20.3 293 50-442 93-454 (472)
45 1yks_A Genome polyprotein [con 100.0 1.5E-40 5E-45 335.6 11.9 279 66-453 5-313 (440)
46 2xau_A PRE-mRNA-splicing facto 100.0 6.9E-38 2.4E-42 334.9 27.1 330 34-444 78-445 (773)
47 3o8b_A HCV NS3 protease/helica 100.0 1.3E-38 4.4E-43 328.6 18.7 280 50-445 217-517 (666)
48 2wv9_A Flavivirin protease NS2 100.0 1.3E-38 4.3E-43 334.2 18.4 304 42-447 202-541 (673)
49 2z83_A Helicase/nucleoside tri 100.0 5E-38 1.7E-42 319.2 21.2 269 67-442 19-313 (459)
50 2v6i_A RNA helicase; membrane, 100.0 1.2E-36 4E-41 306.5 22.7 269 69-439 2-288 (431)
51 3h1t_A Type I site-specific re 100.0 1.7E-36 6E-41 319.4 20.4 308 50-431 178-545 (590)
52 3dmq_A RNA polymerase-associat 100.0 8.4E-36 2.9E-40 327.3 24.7 327 49-441 152-612 (968)
53 3rc3_A ATP-dependent RNA helic 100.0 3.6E-35 1.2E-39 307.0 23.5 285 67-454 153-456 (677)
54 3jux_A Protein translocase sub 100.0 1.7E-33 5.7E-38 285.5 28.5 386 46-455 72-607 (822)
55 1z63_A Helicase of the SNF2/RA 100.0 4.3E-34 1.5E-38 295.6 22.0 314 50-443 37-454 (500)
56 3fe2_A Probable ATP-dependent 100.0 7.8E-34 2.7E-38 264.4 21.3 212 17-298 24-239 (242)
57 3ber_A Probable ATP-dependent 100.0 4.7E-33 1.6E-37 259.6 21.3 207 20-296 41-247 (249)
58 3ly5_A ATP-dependent RNA helic 100.0 3.7E-33 1.3E-37 262.4 19.9 219 6-291 35-257 (262)
59 3fmo_B ATP-dependent RNA helic 100.0 5.7E-33 2E-37 265.8 20.4 207 20-297 90-298 (300)
60 2pl3_A Probable ATP-dependent 100.0 3.1E-32 1.1E-36 252.8 22.5 209 19-297 22-233 (236)
61 1vec_A ATP-dependent RNA helic 100.0 3E-32 1E-36 247.5 21.9 202 22-294 3-205 (206)
62 1q0u_A Bstdead; DEAD protein, 100.0 1.4E-32 4.8E-37 252.0 19.7 207 22-299 4-214 (219)
63 3bor_A Human initiation factor 100.0 1.6E-32 5.5E-37 254.5 19.5 208 19-297 27-235 (237)
64 2oxc_A Probable ATP-dependent 100.0 3.3E-32 1.1E-36 251.4 21.3 204 21-296 23-228 (230)
65 3iuy_A Probable ATP-dependent 100.0 1.8E-32 6E-37 253.0 19.2 207 18-295 15-227 (228)
66 1t6n_A Probable ATP-dependent 100.0 1.7E-31 5.8E-36 245.1 25.0 204 22-295 14-219 (220)
67 1wrb_A DJVLGB; RNA helicase, D 100.0 2.5E-32 8.6E-37 256.2 18.7 214 20-299 21-242 (253)
68 1qde_A EIF4A, translation init 100.0 1E-31 3.5E-36 247.4 20.2 207 20-298 12-218 (224)
69 3dkp_A Probable ATP-dependent 100.0 2.9E-32 1E-36 254.5 16.6 220 17-299 20-243 (245)
70 1z3i_X Similar to RAD54-like; 100.0 6.9E-31 2.4E-35 277.4 28.2 378 50-454 55-542 (644)
71 3mwy_W Chromo domain-containin 100.0 5.1E-31 1.7E-35 285.5 27.7 345 50-454 236-698 (800)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.5E-31 5.3E-36 290.9 23.1 332 37-441 251-708 (1038)
73 2gxq_A Heat resistant RNA depe 100.0 3.6E-31 1.2E-35 240.6 21.0 202 23-296 2-205 (207)
74 1c4o_A DNA nucleotide excision 100.0 2.5E-28 8.6E-33 257.4 28.4 124 318-445 423-553 (664)
75 2ipc_A Preprotein translocase 100.0 3.6E-27 1.2E-31 243.8 31.0 131 46-210 76-215 (997)
76 2d7d_A Uvrabc system protein B 100.0 5.2E-27 1.8E-31 247.3 28.2 124 318-445 429-559 (661)
77 2hjv_A ATP-dependent RNA helic 100.0 1.1E-27 3.8E-32 208.0 18.6 149 304-455 7-155 (163)
78 1t5i_A C_terminal domain of A 100.0 3.5E-27 1.2E-31 206.4 18.0 148 305-455 4-152 (172)
79 2rb4_A ATP-dependent RNA helic 100.0 2.4E-27 8.4E-32 208.5 16.9 150 304-456 5-161 (175)
80 2p6n_A ATP-dependent RNA helic 99.9 3.5E-27 1.2E-31 209.6 16.4 164 286-454 10-174 (191)
81 3eaq_A Heat resistant RNA depe 99.9 1.7E-26 5.7E-31 209.3 21.1 147 307-456 6-152 (212)
82 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.1E-27 1.4E-31 208.4 15.5 150 303-455 16-166 (185)
83 1fuk_A Eukaryotic initiation f 99.9 4.9E-27 1.7E-31 204.4 15.8 148 306-456 3-151 (165)
84 3i32_A Heat resistant RNA depe 99.9 3.2E-26 1.1E-30 217.0 22.0 147 307-456 3-149 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 2.9E-27 9.8E-32 206.9 0.0 145 307-454 4-149 (170)
86 2vl7_A XPD; helicase, unknown 99.9 1.8E-24 6.2E-29 223.7 18.5 153 46-210 4-188 (540)
87 3crv_A XPD/RAD3 related DNA he 99.9 1.5E-22 5.1E-27 210.2 23.8 153 47-211 1-187 (551)
88 3b6e_A Interferon-induced heli 99.9 2.6E-22 9E-27 183.2 12.8 144 46-215 29-180 (216)
89 3llm_A ATP-dependent RNA helic 99.9 2.1E-21 7E-26 179.3 14.9 180 11-224 1-205 (235)
90 4a15_A XPD helicase, ATP-depen 99.9 1.7E-20 5.9E-25 196.0 19.9 87 50-139 3-89 (620)
91 1rif_A DAR protein, DNA helica 99.8 9.9E-21 3.4E-25 180.0 10.3 128 50-212 113-240 (282)
92 2fz4_A DNA repair protein RAD2 99.8 6.5E-19 2.2E-23 162.2 12.4 116 50-214 93-209 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 6.4E-19 2.2E-23 164.9 11.3 125 315-442 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.6 8.5E-08 2.9E-12 100.1 9.4 86 38-129 136-224 (608)
95 4b3f_X DNA-binding protein smu 98.3 1.7E-06 5.8E-11 91.3 9.2 69 49-124 188-256 (646)
96 2gk6_A Regulator of nonsense t 98.2 1.2E-05 4.1E-10 84.3 13.1 70 48-124 178-247 (624)
97 2xzl_A ATP-dependent helicase 98.1 2.3E-05 7.9E-10 84.1 13.9 70 48-124 358-427 (802)
98 3upu_A ATP-dependent DNA helic 98.1 5E-06 1.7E-10 84.0 7.8 74 45-121 20-94 (459)
99 2wjy_A Regulator of nonsense t 98.1 2.8E-05 9.7E-10 83.3 13.2 70 48-124 354-423 (800)
100 3e1s_A Exodeoxyribonuclease V, 97.8 4.7E-05 1.6E-09 78.6 9.6 65 47-120 187-251 (574)
101 3hgt_A HDA1 complex subunit 3; 97.6 0.00088 3E-08 62.6 13.5 126 315-448 106-243 (328)
102 3lfu_A DNA helicase II; SF1 he 97.5 0.00024 8.1E-09 75.2 8.9 83 49-137 8-92 (647)
103 1uaa_A REP helicase, protein ( 97.3 0.00052 1.8E-08 72.8 8.5 82 50-137 2-86 (673)
104 1pjr_A PCRA; DNA repair, DNA r 97.2 0.00086 2.9E-08 71.6 9.1 83 49-137 10-94 (724)
105 3vkw_A Replicase large subunit 97.0 0.00084 2.9E-08 65.9 6.6 45 70-123 162-206 (446)
106 2o0j_A Terminase, DNA packagin 96.9 0.013 4.3E-07 56.8 13.5 71 50-126 163-233 (385)
107 2orw_A Thymidine kinase; TMTK, 96.8 0.00071 2.4E-08 58.7 3.2 39 69-111 3-41 (184)
108 3ec2_A DNA replication protein 96.7 0.0057 1.9E-07 52.7 9.0 20 68-87 37-56 (180)
109 2b8t_A Thymidine kinase; deoxy 96.6 0.0053 1.8E-07 54.7 7.9 39 69-111 12-50 (223)
110 1xx6_A Thymidine kinase; NESG, 96.6 0.0094 3.2E-07 51.7 9.1 40 68-111 7-46 (191)
111 3cpe_A Terminase, DNA packagin 96.4 0.0061 2.1E-07 63.3 7.8 73 50-128 163-235 (592)
112 3u4q_A ATP-dependent helicase/ 96.3 0.0067 2.3E-07 68.7 8.6 69 50-124 10-80 (1232)
113 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0046 1.6E-07 54.2 5.0 40 69-112 28-67 (219)
114 1w4r_A Thymidine kinase; type 96.2 0.0054 1.8E-07 52.9 5.1 38 69-110 20-57 (195)
115 1a5t_A Delta prime, HOLB; zinc 96.2 0.015 5.1E-07 55.7 8.9 38 51-88 3-43 (334)
116 2j9r_A Thymidine kinase; TK1, 96.0 0.014 4.9E-07 51.1 7.2 40 69-112 28-67 (214)
117 1l8q_A Chromosomal replication 95.9 0.055 1.9E-06 51.4 11.5 36 69-108 37-72 (324)
118 3te6_A Regulatory protein SIR3 95.9 0.041 1.4E-06 51.8 10.2 28 68-96 44-71 (318)
119 2zpa_A Uncharacterized protein 95.3 0.028 9.5E-07 58.2 7.0 58 50-116 175-232 (671)
120 2orv_A Thymidine kinase; TP4A 95.1 0.021 7E-07 50.7 4.9 40 69-112 19-58 (234)
121 2z4s_A Chromosomal replication 95.0 0.14 4.8E-06 50.8 11.2 39 69-109 130-168 (440)
122 2chg_A Replication factor C sm 94.9 0.14 5E-06 45.0 10.0 17 70-86 39-55 (226)
123 1jbk_A CLPB protein; beta barr 94.7 0.33 1.1E-05 41.4 11.6 19 69-87 43-61 (195)
124 1gm5_A RECG; helicase, replica 94.6 0.089 3.1E-06 56.1 9.0 79 331-409 416-496 (780)
125 1d2n_A N-ethylmaleimide-sensit 94.4 0.31 1.1E-05 44.7 11.3 19 69-87 64-82 (272)
126 3oiy_A Reverse gyrase helicase 94.2 0.16 5.5E-06 50.0 9.6 80 330-410 62-146 (414)
127 3u61_B DNA polymerase accessor 94.2 0.22 7.4E-06 47.2 10.0 27 197-223 105-131 (324)
128 3bos_A Putative DNA replicatio 94.0 0.095 3.3E-06 47.0 6.9 20 68-87 51-70 (242)
129 2gno_A DNA polymerase III, gam 94.0 0.12 4.2E-06 48.4 7.7 19 70-88 19-37 (305)
130 2v1u_A Cell division control p 93.8 0.21 7.1E-06 48.4 9.3 20 68-87 43-62 (387)
131 2hjv_A ATP-dependent RNA helic 93.4 0.69 2.4E-05 38.6 10.7 78 101-206 35-112 (163)
132 2r6a_A DNAB helicase, replicat 93.2 0.39 1.3E-05 47.9 10.2 50 58-110 192-241 (454)
133 1iqp_A RFCS; clamp loader, ext 93.2 0.095 3.3E-06 49.6 5.6 17 71-87 48-64 (327)
134 3hjh_A Transcription-repair-co 93.2 0.89 3.1E-05 45.4 12.6 53 68-127 13-65 (483)
135 3kl4_A SRP54, signal recogniti 93.0 0.42 1.4E-05 47.0 9.7 35 70-108 98-132 (433)
136 1sxj_E Activator 1 40 kDa subu 93.0 0.67 2.3E-05 44.3 11.3 17 71-87 38-54 (354)
137 2z43_A DNA repair and recombin 92.7 0.76 2.6E-05 43.4 11.0 67 58-124 95-165 (324)
138 2qby_B CDC6 homolog 3, cell di 92.7 0.23 8E-06 48.1 7.7 19 69-87 45-63 (384)
139 2rb4_A ATP-dependent RNA helic 92.5 0.85 2.9E-05 38.5 10.1 76 100-203 33-108 (175)
140 1fuk_A Eukaryotic initiation f 92.4 1.2 4.2E-05 37.1 10.9 77 101-205 30-106 (165)
141 3pvs_A Replication-associated 92.4 0.48 1.6E-05 47.0 9.5 18 70-87 51-68 (447)
142 2p6n_A ATP-dependent RNA helic 92.3 1.8 6E-05 37.2 11.9 76 102-205 55-130 (191)
143 2q6t_A DNAB replication FORK h 92.3 1.7 5.9E-05 43.0 13.4 60 58-121 189-248 (444)
144 1t6n_A Probable ATP-dependent 92.2 0.95 3.2E-05 39.8 10.4 75 332-409 82-164 (220)
145 2eyq_A TRCF, transcription-rep 92.1 0.54 1.8E-05 52.7 10.4 79 331-409 651-731 (1151)
146 1sxj_C Activator 1 40 kDa subu 92.1 0.22 7.5E-06 47.6 6.4 17 71-87 48-64 (340)
147 1njg_A DNA polymerase III subu 92.1 1 3.5E-05 39.9 10.7 18 70-87 46-63 (250)
148 3eaq_A Heat resistant RNA depe 91.9 1 3.5E-05 39.4 10.2 75 101-203 31-105 (212)
149 4ddu_A Reverse gyrase; topoiso 91.8 0.27 9.1E-06 54.8 7.5 80 330-410 119-203 (1104)
150 1t5i_A C_terminal domain of A 91.3 1.6 5.3E-05 36.8 10.3 77 101-205 31-107 (172)
151 2jgn_A DBX, DDX3, ATP-dependen 91.0 1.1 3.6E-05 38.4 9.0 93 79-204 29-121 (185)
152 2i1q_A DNA repair and recombin 91.0 1.3 4.6E-05 41.6 10.6 66 59-124 87-166 (322)
153 2w58_A DNAI, primosome compone 90.3 0.23 8E-06 43.2 4.3 25 70-95 55-79 (202)
154 3iuy_A Probable ATP-dependent 90.3 0.68 2.3E-05 41.0 7.4 75 331-409 93-173 (228)
155 1sxj_B Activator 1 37 kDa subu 89.8 1.1 3.6E-05 42.1 8.8 17 71-87 44-60 (323)
156 3dm5_A SRP54, signal recogniti 89.8 1.4 4.8E-05 43.3 9.7 59 70-135 101-161 (443)
157 2oxc_A Probable ATP-dependent 89.4 0.93 3.2E-05 40.2 7.6 74 331-409 91-172 (230)
158 3n70_A Transport activator; si 89.4 0.24 8.2E-06 40.5 3.4 20 68-87 23-42 (145)
159 3ber_A Probable ATP-dependent 89.0 4.1 0.00014 36.5 11.7 75 331-409 110-192 (249)
160 1jr3_A DNA polymerase III subu 88.9 0.83 2.8E-05 43.9 7.4 18 70-87 39-56 (373)
161 1tue_A Replication protein E1; 88.7 0.51 1.8E-05 40.9 5.0 48 37-86 28-75 (212)
162 3io5_A Recombination and repai 88.7 0.39 1.3E-05 44.8 4.5 45 66-113 26-70 (333)
163 3i5x_A ATP-dependent RNA helic 88.6 5.3 0.00018 40.8 13.7 101 80-206 319-419 (563)
164 3cmu_A Protein RECA, recombina 88.3 0.42 1.4E-05 55.8 5.4 50 59-112 1415-1466(2050)
165 2i4i_A ATP-dependent RNA helic 88.1 4.1 0.00014 39.6 12.0 76 100-203 275-350 (417)
166 3fe2_A Probable ATP-dependent 87.5 1.5 5.1E-05 39.2 7.7 74 332-409 102-182 (242)
167 2zts_A Putative uncharacterize 87.5 0.44 1.5E-05 42.9 4.1 55 66-124 27-81 (251)
168 2gxq_A Heat resistant RNA depe 87.4 4.4 0.00015 34.8 10.6 74 331-409 71-150 (207)
169 3sqw_A ATP-dependent RNA helic 87.3 7.1 0.00024 40.0 13.7 82 100-206 287-368 (579)
170 3bor_A Human initiation factor 86.8 1.4 4.7E-05 39.3 7.0 76 331-409 97-179 (237)
171 1vec_A ATP-dependent RNA helic 86.5 4.9 0.00017 34.5 10.4 74 332-409 71-152 (206)
172 2dr3_A UPF0273 protein PH0284; 86.5 0.75 2.6E-05 41.2 5.2 52 67-123 21-72 (247)
173 2qgz_A Helicase loader, putati 86.5 0.76 2.6E-05 43.0 5.2 36 69-108 152-188 (308)
174 2w0m_A SSO2452; RECA, SSPF, un 86.4 0.9 3.1E-05 40.2 5.6 47 58-108 11-58 (235)
175 2d7d_A Uvrabc system protein B 86.4 2.7 9.2E-05 44.0 9.9 82 100-209 444-525 (661)
176 3co5_A Putative two-component 86.3 0.26 8.9E-06 40.2 1.7 18 68-85 26-43 (143)
177 2eyu_A Twitching motility prot 86.2 0.43 1.5E-05 43.5 3.3 20 67-86 23-42 (261)
178 1w36_B RECB, exodeoxyribonucle 86.1 1.3 4.4E-05 49.9 7.8 56 70-125 17-80 (1180)
179 3syl_A Protein CBBX; photosynt 86.1 0.97 3.3E-05 42.2 5.8 20 69-88 67-86 (309)
180 3bh0_A DNAB-like replicative h 85.9 1.5 5.1E-05 41.2 7.0 61 58-123 57-117 (315)
181 2oap_1 GSPE-2, type II secreti 85.7 1.3 4.4E-05 44.7 6.8 40 41-85 237-276 (511)
182 3i32_A Heat resistant RNA depe 85.6 3.6 0.00012 38.1 9.4 75 101-203 28-102 (300)
183 1e9r_A Conjugal transfer prote 85.5 0.69 2.3E-05 45.8 4.7 43 69-115 53-95 (437)
184 1oyw_A RECQ helicase, ATP-depe 85.5 1.7 5.8E-05 44.1 7.6 59 332-393 65-123 (523)
185 2cvh_A DNA repair and recombin 85.5 0.72 2.5E-05 40.5 4.4 44 58-108 8-52 (220)
186 2v1x_A ATP-dependent DNA helic 85.2 2.8 9.7E-05 43.1 9.2 59 332-393 84-144 (591)
187 1xti_A Probable ATP-dependent 84.8 6.6 0.00023 37.6 11.4 75 332-409 76-158 (391)
188 3vkg_A Dynein heavy chain, cyt 84.7 1.2 4.2E-05 54.5 6.9 53 35-88 873-925 (3245)
189 1wrb_A DJVLGB; RNA helicase, D 84.6 13 0.00046 33.0 12.7 74 332-409 100-180 (253)
190 2pl3_A Probable ATP-dependent 84.5 2.5 8.6E-05 37.5 7.6 74 331-409 96-177 (236)
191 2p65_A Hypothetical protein PF 84.3 1.1 3.8E-05 37.8 4.9 19 69-87 43-61 (187)
192 2r44_A Uncharacterized protein 84.1 0.3 1E-05 46.3 1.2 32 55-86 32-63 (331)
193 2db3_A ATP-dependent RNA helic 84.1 6.4 0.00022 38.7 11.0 73 103-203 302-374 (434)
194 1c4o_A DNA nucleotide excision 83.7 13 0.00046 38.7 13.7 80 101-209 439-519 (664)
195 3fht_A ATP-dependent RNA helic 83.0 4.4 0.00015 39.2 9.3 75 101-203 266-340 (412)
196 1qde_A EIF4A, translation init 82.9 1.7 6E-05 38.1 5.8 74 331-409 81-161 (224)
197 3pey_A ATP-dependent RNA helic 82.6 4.8 0.00016 38.6 9.3 78 101-207 243-321 (395)
198 3hws_A ATP-dependent CLP prote 82.6 0.59 2E-05 45.0 2.6 20 68-87 50-69 (363)
199 3eie_A Vacuolar protein sortin 82.4 0.77 2.6E-05 43.3 3.3 19 69-87 51-69 (322)
200 1u0j_A DNA replication protein 82.2 2.5 8.4E-05 38.3 6.4 48 37-87 73-122 (267)
201 3bgw_A DNAB-like replicative h 82.1 1.5 5.3E-05 43.3 5.5 49 58-110 186-234 (444)
202 1hv8_A Putative ATP-dependent 82.0 4.4 0.00015 38.4 8.7 78 100-205 237-314 (367)
203 4a1f_A DNAB helicase, replicat 81.2 1.8 6.3E-05 40.8 5.4 59 58-121 35-93 (338)
204 4akg_A Glutathione S-transfera 81.1 1.1 3.7E-05 54.3 4.5 53 35-88 890-942 (2695)
205 3a8t_A Adenylate isopentenyltr 81.0 0.76 2.6E-05 43.3 2.7 18 69-86 40-57 (339)
206 2kjq_A DNAA-related protein; s 80.8 1.5 5.2E-05 35.9 4.2 19 68-86 35-53 (149)
207 2zr9_A Protein RECA, recombina 80.8 1.6 5.3E-05 41.7 4.8 48 59-110 49-98 (349)
208 1cr0_A DNA primase/helicase; R 80.6 2 6.9E-05 39.7 5.5 49 58-109 24-72 (296)
209 1kgd_A CASK, peripheral plasma 80.5 1.1 3.7E-05 38.1 3.3 19 68-86 4-22 (180)
210 3nbx_X ATPase RAVA; AAA+ ATPas 80.5 0.35 1.2E-05 48.6 0.2 31 56-86 28-58 (500)
211 1s2m_A Putative ATP-dependent 80.2 6.1 0.00021 38.1 9.1 76 101-204 258-333 (400)
212 2c9o_A RUVB-like 1; hexameric 80.0 1.5 5.1E-05 43.7 4.6 20 68-87 62-81 (456)
213 1u94_A RECA protein, recombina 79.8 1.9 6.6E-05 41.1 5.1 49 58-110 50-100 (356)
214 4b4t_J 26S protease regulatory 79.7 1.5 5.1E-05 42.4 4.3 18 69-86 182-199 (405)
215 2bjv_A PSP operon transcriptio 79.7 1.3 4.4E-05 40.3 3.8 19 68-86 28-46 (265)
216 1ex7_A Guanylate kinase; subst 79.6 0.83 2.8E-05 39.1 2.2 16 70-85 2-17 (186)
217 1p9r_A General secretion pathw 79.5 1.4 4.9E-05 43.1 4.2 38 43-85 146-183 (418)
218 4b4t_M 26S protease regulatory 79.5 1.4 4.9E-05 43.2 4.1 18 69-86 215-232 (434)
219 4ag6_A VIRB4 ATPase, type IV s 79.5 1.6 5.6E-05 42.3 4.6 41 68-112 34-74 (392)
220 2ius_A DNA translocase FTSK; n 79.3 2.3 7.9E-05 42.6 5.7 43 68-110 166-208 (512)
221 1xp8_A RECA protein, recombina 79.3 1.9 6.4E-05 41.4 4.8 49 58-110 61-111 (366)
222 1q57_A DNA primase/helicase; d 79.2 2.2 7.5E-05 43.0 5.6 59 59-121 232-290 (503)
223 3cf0_A Transitional endoplasmi 79.1 1.2 4.3E-05 41.4 3.5 20 68-87 48-67 (301)
224 3dc4_A Kinesin-like protein NO 79.1 0.46 1.6E-05 45.0 0.5 34 52-85 72-111 (344)
225 2j0s_A ATP-dependent RNA helic 79.1 6 0.00021 38.3 8.7 75 102-204 277-351 (410)
226 3exa_A TRNA delta(2)-isopenten 79.1 1 3.5E-05 41.9 2.8 17 70-86 4-20 (322)
227 2qmh_A HPR kinase/phosphorylas 79.0 0.96 3.3E-05 39.0 2.4 18 69-86 34-51 (205)
228 3h4m_A Proteasome-activating n 79.0 1.3 4.4E-05 40.8 3.5 19 68-86 50-68 (285)
229 4a14_A Kinesin, kinesin-like p 79.0 0.6 2E-05 44.4 1.2 35 51-85 60-100 (344)
230 3uk6_A RUVB-like 2; hexameric 78.9 1.6 5.4E-05 41.9 4.3 20 68-87 69-88 (368)
231 2r2a_A Uncharacterized protein 78.9 1.2 4E-05 38.6 3.0 18 71-88 7-24 (199)
232 3ly5_A ATP-dependent RNA helic 78.8 8.1 0.00028 34.8 8.9 75 331-409 125-207 (262)
233 3bfn_A Kinesin-like protein KI 78.8 0.76 2.6E-05 44.2 1.9 35 51-85 75-115 (388)
234 2qz4_A Paraplegin; AAA+, SPG7, 78.7 1.3 4.5E-05 40.0 3.5 19 69-87 39-57 (262)
235 3vaa_A Shikimate kinase, SK; s 78.4 1.3 4.3E-05 38.4 3.1 20 68-87 24-43 (199)
236 3iij_A Coilin-interacting nucl 78.3 1.7 6E-05 36.6 3.9 20 68-87 10-29 (180)
237 3foz_A TRNA delta(2)-isopenten 78.3 1.1 3.8E-05 41.6 2.8 17 70-86 11-27 (316)
238 1goj_A Kinesin, kinesin heavy 78.2 0.82 2.8E-05 43.6 1.9 33 53-85 59-97 (355)
239 1vma_A Cell division protein F 78.2 17 0.00058 33.6 10.9 35 70-108 105-139 (306)
240 3hr8_A Protein RECA; alpha and 78.1 1.7 5.8E-05 41.5 4.1 49 59-111 49-99 (356)
241 2iut_A DNA translocase FTSK; n 78.1 2.6 8.9E-05 42.8 5.6 43 69-111 214-256 (574)
242 4b4t_K 26S protease regulatory 78.0 1.5 5E-05 43.0 3.7 19 68-86 205-223 (428)
243 2chq_A Replication factor C sm 78.0 2 6.9E-05 40.0 4.7 17 71-87 40-56 (319)
244 2qor_A Guanylate kinase; phosp 77.7 1.6 5.6E-05 37.8 3.6 21 66-86 9-29 (204)
245 3tau_A Guanylate kinase, GMP k 77.5 1.4 4.7E-05 38.5 3.1 19 68-86 7-25 (208)
246 3trf_A Shikimate kinase, SK; a 77.5 1.4 4.6E-05 37.5 3.0 19 69-87 5-23 (185)
247 1sxj_D Activator 1 41 kDa subu 77.5 0.96 3.3E-05 43.1 2.2 18 70-87 59-76 (353)
248 4b4t_L 26S protease subunit RP 77.4 1.8 6.1E-05 42.5 4.1 19 68-86 214-232 (437)
249 3ney_A 55 kDa erythrocyte memb 77.4 1.6 5.5E-05 37.7 3.4 19 68-86 18-36 (197)
250 2l82_A Designed protein OR32; 77.3 20 0.00067 26.6 10.0 51 335-388 5-55 (162)
251 3fmo_B ATP-dependent RNA helic 77.3 5 0.00017 37.2 7.1 71 332-409 162-241 (300)
252 2zfi_A Kinesin-like protein KI 77.1 0.7 2.4E-05 44.3 1.1 33 53-85 68-106 (366)
253 3b9p_A CG5977-PA, isoform A; A 77.1 1.3 4.5E-05 41.0 3.0 18 69-86 54-71 (297)
254 3t15_A Ribulose bisphosphate c 77.0 1.5 5.1E-05 40.7 3.3 18 70-87 37-54 (293)
255 1qhx_A CPT, protein (chloramph 76.9 1.3 4.3E-05 37.4 2.6 18 69-86 3-20 (178)
256 2px0_A Flagellar biosynthesis 76.9 2.5 8.5E-05 39.2 4.8 37 69-108 105-141 (296)
257 1ofh_A ATP-dependent HSL prote 76.7 1.5 5.2E-05 40.7 3.4 19 69-87 50-68 (310)
258 1q0u_A Bstdead; DEAD protein, 76.6 1.8 6.3E-05 37.9 3.7 74 332-409 72-156 (219)
259 2ehv_A Hypothetical protein PH 76.1 2.6 9E-05 37.6 4.7 25 66-90 27-51 (251)
260 2ffh_A Protein (FFH); SRP54, s 75.8 10 0.00035 37.0 9.0 43 69-115 98-142 (425)
261 1ojl_A Transcriptional regulat 75.8 1.8 6.1E-05 40.4 3.5 19 68-86 24-42 (304)
262 1lvg_A Guanylate kinase, GMP k 75.8 1.6 5.6E-05 37.6 3.1 19 68-86 3-21 (198)
263 1wp9_A ATP-dependent RNA helic 75.7 17 0.00058 35.7 11.1 100 78-207 340-447 (494)
264 4fcw_A Chaperone protein CLPB; 75.6 0.51 1.7E-05 44.2 -0.3 18 70-87 48-65 (311)
265 2h58_A Kinesin-like protein KI 75.5 0.72 2.5E-05 43.5 0.7 20 67-86 77-98 (330)
266 1xwi_A SKD1 protein; VPS4B, AA 75.5 1.5 5.1E-05 41.3 2.9 19 69-87 45-63 (322)
267 3u4q_B ATP-dependent helicase/ 75.4 2.3 7.8E-05 47.9 4.9 51 72-124 4-54 (1166)
268 1zp6_A Hypothetical protein AT 75.2 1.4 4.9E-05 37.5 2.6 18 68-85 8-25 (191)
269 1y63_A LMAJ004144AAA protein; 75.2 2 7E-05 36.4 3.5 19 68-86 9-27 (184)
270 2ze6_A Isopentenyl transferase 75.1 1.6 5.3E-05 39.5 2.8 16 71-86 3-18 (253)
271 1lv7_A FTSH; alpha/beta domain 75.0 1.6 5.5E-05 39.4 3.0 19 69-87 45-63 (257)
272 3lw7_A Adenylate kinase relate 75.0 1.3 4.3E-05 37.1 2.1 17 71-87 3-19 (179)
273 1f9v_A Kinesin-like protein KA 74.9 1.3 4.3E-05 42.1 2.2 24 63-86 77-102 (347)
274 1fuu_A Yeast initiation factor 74.9 8.4 0.00029 36.9 8.3 74 331-409 88-168 (394)
275 4b4t_I 26S protease regulatory 74.6 2.5 8.5E-05 41.2 4.2 18 69-86 216-233 (437)
276 2owm_A Nckin3-434, related to 74.5 0.93 3.2E-05 44.6 1.2 34 53-86 115-154 (443)
277 1bg2_A Kinesin; motor protein, 74.2 0.84 2.9E-05 42.9 0.8 34 52-85 55-94 (325)
278 4b4t_H 26S protease regulatory 74.1 2.1 7.3E-05 42.1 3.6 19 68-86 242-260 (467)
279 1t5c_A CENP-E protein, centrom 74.0 0.89 3E-05 43.2 0.9 34 53-86 56-95 (349)
280 1kag_A SKI, shikimate kinase I 74.0 2.2 7.4E-05 35.6 3.3 18 69-86 4-21 (173)
281 3t0q_A AGR253WP; kinesin, alph 73.9 1.4 4.8E-05 41.9 2.2 24 63-86 78-103 (349)
282 2j41_A Guanylate kinase; GMP, 73.9 2.1 7.1E-05 37.0 3.3 19 68-86 5-23 (207)
283 1ry6_A Internal kinesin; kines 73.8 0.84 2.9E-05 43.6 0.7 17 69-85 83-101 (360)
284 2heh_A KIF2C protein; kinesin, 73.8 0.92 3.1E-05 43.7 1.0 35 52-86 112-152 (387)
285 2qp9_X Vacuolar protein sortin 73.7 1.9 6.5E-05 41.2 3.2 19 69-87 84-102 (355)
286 3b6e_A Interferon-induced heli 73.7 2.8 9.5E-05 36.4 4.1 58 332-393 82-140 (216)
287 3tr0_A Guanylate kinase, GMP k 73.6 2.1 7.2E-05 36.9 3.3 19 68-86 6-24 (205)
288 2r8r_A Sensor protein; KDPD, P 73.4 3.8 0.00013 36.0 4.8 24 71-94 8-31 (228)
289 2yjt_D ATP-dependent RNA helic 75.6 0.7 2.4E-05 38.9 0.0 76 101-204 30-105 (170)
290 1um8_A ATP-dependent CLP prote 73.0 2.2 7.5E-05 41.1 3.5 19 69-87 72-90 (376)
291 3lre_A Kinesin-like protein KI 72.9 1.1 3.8E-05 42.7 1.3 34 52-85 83-122 (355)
292 1n0w_A DNA repair protein RAD5 72.8 2.1 7.2E-05 38.1 3.1 33 59-91 13-46 (243)
293 3f9v_A Minichromosome maintena 72.8 2.5 8.5E-05 43.6 4.0 15 71-85 329-343 (595)
294 3crm_A TRNA delta(2)-isopenten 72.8 1.9 6.4E-05 40.4 2.8 18 70-87 6-23 (323)
295 2gza_A Type IV secretion syste 72.8 1.9 6.5E-05 41.3 3.0 18 68-85 174-191 (361)
296 2ewv_A Twitching motility prot 72.6 1.8 6.1E-05 41.7 2.7 19 68-86 135-153 (372)
297 1g5t_A COB(I)alamin adenosyltr 72.5 4.8 0.00016 34.5 5.0 36 69-108 28-63 (196)
298 3nwn_A Kinesin-like protein KI 72.3 2.2 7.4E-05 40.7 3.2 32 54-85 84-121 (359)
299 1tf5_A Preprotein translocase 72.2 8.8 0.0003 40.8 7.9 76 328-409 120-209 (844)
300 4a2p_A RIG-I, retinoic acid in 72.2 10 0.00036 38.3 8.6 74 332-409 55-136 (556)
301 2y65_A Kinesin, kinesin heavy 72.1 1 3.5E-05 43.1 0.8 35 51-85 61-101 (365)
302 3jvv_A Twitching mobility prot 71.9 1.9 6.4E-05 41.2 2.7 17 69-85 123-139 (356)
303 3b6u_A Kinesin-like protein KI 71.9 0.97 3.3E-05 43.3 0.6 34 52-85 79-118 (372)
304 2pt7_A CAG-ALFA; ATPase, prote 71.8 3.4 0.00012 38.9 4.4 18 68-85 170-187 (330)
305 3a00_A Guanylate kinase, GMP k 71.8 2.5 8.5E-05 35.9 3.2 17 70-86 2-18 (186)
306 2vvg_A Kinesin-2; motor protei 71.6 0.99 3.4E-05 42.9 0.6 35 51-85 66-106 (350)
307 3d3q_A TRNA delta(2)-isopenten 71.5 2.1 7.2E-05 40.4 2.8 16 71-86 9-24 (340)
308 3pfi_A Holliday junction ATP-d 71.5 3.1 0.00011 39.3 4.1 19 69-87 55-73 (338)
309 2r62_A Cell division protease 71.3 1.5 5.2E-05 39.8 1.8 19 69-87 44-62 (268)
310 3d8b_A Fidgetin-like protein 1 71.2 2.3 7.9E-05 40.7 3.1 19 69-87 117-135 (357)
311 3cmw_A Protein RECA, recombina 71.0 3.9 0.00013 47.2 5.3 52 66-124 1428-1479(1706)
312 1gku_B Reverse gyrase, TOP-RG; 70.9 5.1 0.00017 44.5 6.2 77 331-409 98-181 (1054)
313 1v5w_A DMC1, meiotic recombina 70.8 3.6 0.00012 39.1 4.4 53 59-111 111-166 (343)
314 3kb2_A SPBC2 prophage-derived 70.8 2.3 8E-05 35.3 2.8 17 71-87 3-19 (173)
315 1x88_A Kinesin-like protein KI 70.6 1.1 3.6E-05 42.9 0.6 34 52-85 66-105 (359)
316 1ly1_A Polynucleotide kinase; 70.3 2.4 8.4E-05 35.5 2.8 16 71-86 4-19 (181)
317 3gbj_A KIF13B protein; kinesin 70.3 1.2 4E-05 42.5 0.8 33 53-85 71-109 (354)
318 3eph_A TRNA isopentenyltransfe 69.9 2.1 7.2E-05 41.4 2.5 17 71-87 4-20 (409)
319 1z6g_A Guanylate kinase; struc 69.9 3 0.0001 36.6 3.4 18 68-85 22-39 (218)
320 1v8k_A Kinesin-like protein KI 69.9 1.1 3.6E-05 43.6 0.4 34 52-85 132-171 (410)
321 4eun_A Thermoresistant glucoki 69.7 2.8 9.6E-05 36.1 3.1 19 68-86 28-46 (200)
322 2rep_A Kinesin-like protein KI 69.6 1.7 6E-05 41.6 1.8 34 52-85 94-132 (376)
323 2fsf_A Preprotein translocase 69.6 9.6 0.00033 40.4 7.5 60 328-393 111-171 (853)
324 2nr8_A Kinesin-like protein KI 69.5 1.1 3.9E-05 42.6 0.5 32 54-85 83-120 (358)
325 1kht_A Adenylate kinase; phosp 69.4 2.7 9.3E-05 35.6 3.0 18 69-86 3-20 (192)
326 1xjc_A MOBB protein homolog; s 69.3 5.6 0.00019 33.2 4.7 25 71-96 6-30 (169)
327 1ixz_A ATP-dependent metallopr 69.2 3.2 0.00011 37.3 3.5 17 70-86 50-66 (254)
328 3b85_A Phosphate starvation-in 69.1 3.7 0.00013 35.7 3.7 31 52-86 9-39 (208)
329 2wbe_C Bipolar kinesin KRP-130 69.1 1.1 3.9E-05 42.9 0.4 33 53-85 79-117 (373)
330 3tbk_A RIG-I helicase domain; 69.0 18 0.00061 36.5 9.5 97 80-203 370-476 (555)
331 1nkt_A Preprotein translocase 68.9 12 0.0004 40.0 7.9 77 327-409 147-237 (922)
332 3vfd_A Spastin; ATPase, microt 68.9 2.6 8.8E-05 40.9 2.9 19 69-87 148-166 (389)
333 2qt1_A Nicotinamide riboside k 68.7 2.7 9.1E-05 36.4 2.8 21 66-86 18-38 (207)
334 3cm0_A Adenylate kinase; ATP-b 68.7 2.1 7.3E-05 36.2 2.1 19 69-87 4-22 (186)
335 2v54_A DTMP kinase, thymidylat 68.6 3.4 0.00012 35.5 3.4 19 68-86 3-21 (204)
336 4gp7_A Metallophosphoesterase; 68.3 2 6.9E-05 36.0 1.8 19 68-86 8-26 (171)
337 3k1j_A LON protease, ATP-depen 68.3 1.8 6.3E-05 44.7 1.8 20 67-86 58-77 (604)
338 4a74_A DNA repair and recombin 68.2 2.6 8.8E-05 37.1 2.6 22 66-87 22-43 (231)
339 1yks_A Genome polyprotein [con 68.2 11 0.00036 37.2 7.3 69 101-202 177-245 (440)
340 3eiq_A Eukaryotic initiation f 68.2 16 0.00054 35.2 8.6 76 331-409 107-189 (414)
341 2z0m_A 337AA long hypothetical 68.2 11 0.00039 34.9 7.4 73 332-409 56-135 (337)
342 1knq_A Gluconate kinase; ALFA/ 67.8 2.7 9.3E-05 35.2 2.5 18 69-86 8-25 (175)
343 4etp_A Kinesin-like protein KA 67.8 3.4 0.00011 40.1 3.4 21 66-86 136-158 (403)
344 4gl2_A Interferon-induced heli 67.7 5.8 0.0002 41.7 5.6 78 101-203 400-488 (699)
345 2x8a_A Nuclear valosin-contain 67.5 3.7 0.00013 37.5 3.5 17 70-86 45-61 (274)
346 1c9k_A COBU, adenosylcobinamid 67.4 3.6 0.00012 34.8 3.2 33 72-112 2-34 (180)
347 2zan_A Vacuolar protein sortin 67.4 2.9 9.8E-05 41.4 3.0 19 69-87 167-185 (444)
348 3umf_A Adenylate kinase; rossm 67.4 3.4 0.00012 36.3 3.1 20 68-87 28-47 (217)
349 3c8u_A Fructokinase; YP_612366 67.1 4 0.00014 35.4 3.6 18 68-85 21-38 (208)
350 1zuh_A Shikimate kinase; alpha 67.0 3.2 0.00011 34.4 2.9 18 70-87 8-25 (168)
351 2yvu_A Probable adenylyl-sulfa 67.0 6.6 0.00023 33.1 4.9 20 68-87 12-31 (186)
352 1hqc_A RUVB; extended AAA-ATPa 66.8 2.5 8.7E-05 39.5 2.4 19 69-87 38-56 (324)
353 2rhm_A Putative kinase; P-loop 66.8 3.1 0.00011 35.3 2.8 19 69-87 5-23 (193)
354 1s96_A Guanylate kinase, GMP k 66.7 3.5 0.00012 36.2 3.1 19 67-85 14-32 (219)
355 1in4_A RUVB, holliday junction 66.1 3.4 0.00012 39.0 3.1 17 70-86 52-68 (334)
356 1znw_A Guanylate kinase, GMP k 66.1 3.7 0.00013 35.5 3.2 18 68-85 19-36 (207)
357 3uie_A Adenylyl-sulfate kinase 65.9 3.2 0.00011 35.7 2.7 20 68-87 24-43 (200)
358 1nlf_A Regulatory protein REPA 65.8 1.8 6.1E-05 39.8 1.0 26 65-90 26-51 (279)
359 2qby_A CDC6 homolog 1, cell di 65.8 4.6 0.00016 38.6 4.1 25 69-94 45-69 (386)
360 1via_A Shikimate kinase; struc 65.6 3.8 0.00013 34.3 3.0 17 71-87 6-22 (175)
361 3u06_A Protein claret segregat 65.6 3.6 0.00012 40.0 3.2 19 67-85 135-155 (412)
362 1zd8_A GTP:AMP phosphotransfer 65.5 3.3 0.00011 36.5 2.7 18 69-86 7-24 (227)
363 1aky_A Adenylate kinase; ATP:A 65.0 3.9 0.00013 35.7 3.1 19 69-87 4-22 (220)
364 1iy2_A ATP-dependent metallopr 64.9 4.4 0.00015 37.0 3.6 17 70-86 74-90 (278)
365 3pxg_A Negative regulator of g 64.9 2.6 8.7E-05 42.1 2.1 20 68-87 200-219 (468)
366 2ipc_A Preprotein translocase 64.9 15 0.00051 39.4 7.8 61 327-393 115-176 (997)
367 2iyv_A Shikimate kinase, SK; t 64.7 4.3 0.00015 34.2 3.3 18 70-87 3-20 (184)
368 2c95_A Adenylate kinase 1; tra 64.6 3.6 0.00012 35.0 2.8 20 68-87 8-27 (196)
369 1g41_A Heat shock protein HSLU 64.5 4.3 0.00015 39.9 3.5 18 69-86 50-67 (444)
370 3hu3_A Transitional endoplasmi 64.5 4.3 0.00015 40.6 3.6 20 68-87 237-256 (489)
371 3t61_A Gluconokinase; PSI-biol 64.5 3.7 0.00013 35.3 2.8 18 70-87 19-36 (202)
372 1z5z_A Helicase of the SNF2/RA 64.2 49 0.0017 29.8 10.5 62 77-145 92-153 (271)
373 3cob_A Kinesin heavy chain-lik 64.2 3.3 0.00011 39.5 2.6 19 67-85 76-96 (369)
374 3lnc_A Guanylate kinase, GMP k 64.0 3.1 0.0001 36.8 2.2 19 68-86 26-44 (231)
375 2cdn_A Adenylate kinase; phosp 63.8 4.5 0.00015 34.7 3.2 19 69-87 20-38 (201)
376 3fb4_A Adenylate kinase; psych 63.7 3.9 0.00013 35.6 2.8 17 71-87 2-18 (216)
377 2bdt_A BH3686; alpha-beta prot 63.6 4 0.00014 34.6 2.8 18 70-87 3-20 (189)
378 1g8p_A Magnesium-chelatase 38 63.5 2.7 9.3E-05 39.8 1.9 19 69-87 45-63 (350)
379 2v9p_A Replication protein E1; 63.5 8.8 0.0003 35.6 5.3 29 57-85 114-142 (305)
380 1zak_A Adenylate kinase; ATP:A 63.4 4.5 0.00015 35.4 3.2 19 69-87 5-23 (222)
381 1tev_A UMP-CMP kinase; ploop, 63.4 3.6 0.00012 35.0 2.5 19 69-87 3-21 (196)
382 3dkp_A Probable ATP-dependent 63.2 4.9 0.00017 35.8 3.4 75 332-409 98-181 (245)
383 1ye8_A Protein THEP1, hypothet 63.1 4.3 0.00015 34.3 2.8 16 71-86 2-17 (178)
384 1f2t_A RAD50 ABC-ATPase; DNA d 63.1 4.6 0.00016 32.9 3.0 15 71-85 25-39 (149)
385 1e6c_A Shikimate kinase; phosp 63.1 4.6 0.00016 33.5 3.1 18 70-87 3-20 (173)
386 3cmw_A Protein RECA, recombina 63.0 7.4 0.00025 45.0 5.5 48 59-110 22-71 (1706)
387 2p5t_B PEZT; postsegregational 63.0 6.1 0.00021 35.5 4.1 18 69-86 32-49 (253)
388 1gvn_B Zeta; postsegregational 62.8 2.8 9.6E-05 38.6 1.8 18 69-86 33-50 (287)
389 3sr0_A Adenylate kinase; phosp 62.7 4.3 0.00015 35.2 2.8 17 71-87 2-18 (206)
390 3dl0_A Adenylate kinase; phosp 62.6 4.2 0.00014 35.4 2.8 17 71-87 2-18 (216)
391 3ice_A Transcription terminati 62.4 7 0.00024 37.5 4.4 31 56-87 162-192 (422)
392 2xau_A PRE-mRNA-splicing facto 62.4 33 0.0011 36.4 10.2 84 101-203 303-393 (773)
393 1nij_A Hypothetical protein YJ 61.8 5.8 0.0002 37.1 3.8 15 71-85 6-20 (318)
394 3nwj_A ATSK2; P loop, shikimat 61.7 5.2 0.00018 35.9 3.3 19 69-87 48-66 (250)
395 1ak2_A Adenylate kinase isoenz 61.6 4.9 0.00017 35.5 3.1 19 69-87 16-34 (233)
396 3lda_A DNA repair protein RAD5 61.3 5.5 0.00019 38.6 3.6 42 68-109 177-220 (400)
397 1nks_A Adenylate kinase; therm 60.9 4.2 0.00014 34.4 2.5 17 71-87 3-19 (194)
398 1sxj_A Activator 1 95 kDa subu 60.9 4.4 0.00015 40.9 3.0 18 70-87 78-95 (516)
399 2wwf_A Thymidilate kinase, put 60.9 5 0.00017 34.6 3.0 20 68-87 9-28 (212)
400 2plr_A DTMP kinase, probable t 60.7 4.4 0.00015 35.0 2.6 19 69-87 4-22 (213)
401 1zu4_A FTSY; GTPase, signal re 60.6 8.4 0.00029 36.0 4.6 35 70-108 106-140 (320)
402 2pez_A Bifunctional 3'-phospho 60.5 4.6 0.00016 33.9 2.6 19 68-86 4-22 (179)
403 3cmu_A Protein RECA, recombina 60.5 7.8 0.00027 45.6 5.1 56 58-118 1068-1125(2050)
404 2bwj_A Adenylate kinase 5; pho 60.3 4.6 0.00016 34.4 2.7 18 69-86 12-29 (199)
405 3bs4_A Uncharacterized protein 60.3 12 0.00042 33.6 5.5 61 59-124 10-71 (260)
406 4a2q_A RIG-I, retinoic acid in 60.3 18 0.00063 38.6 7.9 74 332-409 296-377 (797)
407 1qf9_A UMP/CMP kinase, protein 60.2 4.5 0.00015 34.2 2.6 18 70-87 7-24 (194)
408 1cke_A CK, MSSA, protein (cyti 59.8 5 0.00017 35.2 2.8 18 70-87 6-23 (227)
409 2vli_A Antibiotic resistance p 59.7 4.5 0.00015 34.0 2.4 19 69-87 5-23 (183)
410 2ce7_A Cell division protein F 59.6 5.9 0.0002 39.4 3.5 18 69-86 49-66 (476)
411 2oca_A DAR protein, ATP-depend 59.5 31 0.0011 34.4 9.1 78 103-207 349-426 (510)
412 2i3b_A HCR-ntpase, human cance 59.5 6.1 0.00021 33.7 3.2 18 70-87 2-19 (189)
413 1svm_A Large T antigen; AAA+ f 59.5 7 0.00024 37.5 3.9 22 65-86 165-186 (377)
414 3pxi_A Negative regulator of g 59.2 2.1 7.1E-05 45.7 0.2 17 71-87 523-539 (758)
415 2pt5_A Shikimate kinase, SK; a 58.9 5.5 0.00019 32.8 2.8 17 71-87 2-18 (168)
416 3m6a_A ATP-dependent protease 58.8 8.1 0.00028 39.2 4.5 19 68-86 107-125 (543)
417 3kta_A Chromosome segregation 58.6 5.3 0.00018 33.5 2.7 16 71-86 28-43 (182)
418 1nn5_A Similar to deoxythymidy 58.5 5.8 0.0002 34.3 3.0 20 68-87 8-27 (215)
419 1ukz_A Uridylate kinase; trans 58.4 5.6 0.00019 34.1 2.8 17 70-86 16-32 (203)
420 3asz_A Uridine kinase; cytidin 58.3 4.7 0.00016 34.9 2.4 18 69-86 6-23 (211)
421 1fnn_A CDC6P, cell division co 58.2 5.4 0.00018 38.3 3.0 16 71-86 46-61 (389)
422 3be4_A Adenylate kinase; malar 58.1 5 0.00017 35.0 2.5 19 69-87 5-23 (217)
423 2j37_W Signal recognition part 58.0 46 0.0016 33.2 9.7 35 71-109 103-137 (504)
424 3tqc_A Pantothenate kinase; bi 57.9 11 0.00036 35.3 4.8 15 72-86 95-109 (321)
425 2jaq_A Deoxyguanosine kinase; 57.8 5.6 0.00019 34.0 2.8 16 71-86 2-17 (205)
426 2v3c_C SRP54, signal recogniti 57.8 9.1 0.00031 37.5 4.5 35 70-108 100-134 (432)
427 3cf2_A TER ATPase, transitiona 57.8 9.7 0.00033 40.5 5.0 18 69-86 511-528 (806)
428 2f1r_A Molybdopterin-guanine d 57.8 4.3 0.00015 34.0 1.9 16 71-86 4-19 (171)
429 3tif_A Uncharacterized ABC tra 57.5 4.7 0.00016 35.8 2.2 17 68-84 30-46 (235)
430 3tlx_A Adenylate kinase 2; str 57.5 5.4 0.00018 35.6 2.6 19 69-87 29-47 (243)
431 1tf7_A KAIC; homohexamer, hexa 57.4 7.7 0.00026 39.2 4.1 48 58-108 27-75 (525)
432 1np6_A Molybdopterin-guanine d 57.3 12 0.00042 31.3 4.7 25 70-95 7-31 (174)
433 1jjv_A Dephospho-COA kinase; P 57.3 5.9 0.0002 34.1 2.8 16 71-86 4-19 (206)
434 1rj9_A FTSY, signal recognitio 57.1 12 0.0004 34.8 4.9 36 69-108 102-137 (304)
435 3rc3_A ATP-dependent RNA helic 57.0 35 0.0012 35.6 8.9 77 103-209 322-401 (677)
436 2ykg_A Probable ATP-dependent 57.0 18 0.00063 37.8 7.1 79 100-203 397-485 (696)
437 2vhj_A Ntpase P4, P4; non- hyd 56.8 5.9 0.0002 37.0 2.8 23 68-90 122-144 (331)
438 3b9q_A Chloroplast SRP recepto 56.6 12 0.00042 34.6 5.0 36 69-108 100-135 (302)
439 3foj_A Uncharacterized protein 56.5 11 0.00039 27.9 4.0 36 332-370 56-91 (100)
440 3gk5_A Uncharacterized rhodane 56.5 11 0.00036 28.6 3.9 37 331-370 54-90 (108)
441 1e4v_A Adenylate kinase; trans 56.5 5.6 0.00019 34.5 2.6 17 71-87 2-18 (214)
442 3dmq_A RNA polymerase-associat 56.4 26 0.00087 38.5 8.2 96 78-207 486-584 (968)
443 2pbr_A DTMP kinase, thymidylat 56.4 6.2 0.00021 33.4 2.8 17 71-87 2-18 (195)
444 3o8b_A HCV NS3 protease/helica 56.3 13 0.00043 38.7 5.4 66 101-202 396-461 (666)
445 3qf7_A RAD50; ABC-ATPase, ATPa 56.3 6.2 0.00021 37.8 3.0 17 71-87 25-41 (365)
446 2bbw_A Adenylate kinase 4, AK4 56.2 6.9 0.00023 34.9 3.1 18 69-86 27-44 (246)
447 4e22_A Cytidylate kinase; P-lo 56.0 6.8 0.00023 35.2 3.1 18 69-86 27-44 (252)
448 2if2_A Dephospho-COA kinase; a 55.8 5.8 0.0002 34.0 2.5 16 71-86 3-18 (204)
449 2z0h_A DTMP kinase, thymidylat 55.7 6.6 0.00022 33.4 2.8 22 72-94 3-24 (197)
450 3a4m_A L-seryl-tRNA(SEC) kinas 55.6 6.3 0.00022 35.5 2.8 18 70-87 5-22 (260)
451 2wv9_A Flavivirin protease NS2 55.5 27 0.00092 36.4 7.9 68 101-202 410-478 (673)
452 2xb4_A Adenylate kinase; ATP-b 55.4 6.5 0.00022 34.5 2.8 17 71-87 2-18 (223)
453 2cbz_A Multidrug resistance-as 55.2 5.4 0.00018 35.5 2.2 18 68-85 30-47 (237)
454 2jlq_A Serine protease subunit 55.0 31 0.001 33.9 8.0 68 102-202 189-256 (451)
455 2va8_A SSO2462, SKI2-type heli 54.9 43 0.0015 35.2 9.5 78 101-203 252-362 (715)
456 1m7g_A Adenylylsulfate kinase; 54.4 7 0.00024 33.8 2.8 20 68-87 24-43 (211)
457 3eme_A Rhodanese-like domain p 54.1 11 0.00038 28.1 3.6 36 332-370 56-91 (103)
458 4a2w_A RIG-I, retinoic acid in 53.7 26 0.00089 38.2 7.7 101 79-206 611-721 (936)
459 1htw_A HI0065; nucleotide-bind 53.6 8.4 0.00029 31.7 3.0 18 68-85 32-49 (158)
460 1uf9_A TT1252 protein; P-loop, 53.2 6.7 0.00023 33.5 2.5 17 70-86 9-25 (203)
461 1sgw_A Putative ABC transporte 53.2 7.2 0.00024 34.0 2.6 31 195-225 149-179 (214)
462 1wv9_A Rhodanese homolog TT165 53.1 15 0.00052 26.7 4.2 35 333-370 54-88 (94)
463 2p6r_A Afuhel308 helicase; pro 53.1 23 0.00078 37.2 7.0 72 331-409 67-144 (702)
464 3pxi_A Negative regulator of g 52.9 6.7 0.00023 41.8 2.9 21 68-88 200-220 (758)
465 3nh6_A ATP-binding cassette SU 52.9 6.5 0.00022 36.5 2.4 19 67-85 78-96 (306)
466 3oaa_A ATP synthase subunit al 52.5 92 0.0032 30.9 10.5 30 56-86 150-179 (513)
467 3auy_A DNA double-strand break 52.5 5.3 0.00018 38.3 1.8 17 70-86 26-42 (371)
468 3qks_A DNA double-strand break 52.1 8.7 0.0003 33.1 3.0 17 70-86 24-40 (203)
469 2dhr_A FTSH; AAA+ protein, hex 52.0 7.6 0.00026 38.9 2.9 17 70-86 65-81 (499)
470 1ypw_A Transitional endoplasmi 51.9 7.9 0.00027 41.5 3.2 19 68-86 237-255 (806)
471 2ghi_A Transport protein; mult 51.7 6.5 0.00022 35.5 2.2 18 68-85 45-62 (260)
472 3iwh_A Rhodanese-like domain p 51.7 13 0.00045 27.9 3.6 36 332-370 56-91 (103)
473 4edh_A DTMP kinase, thymidylat 51.7 15 0.00052 31.9 4.5 28 68-96 5-32 (213)
474 2og2_A Putative signal recogni 51.5 16 0.00054 34.7 4.9 36 69-108 157-192 (359)
475 2v6i_A RNA helicase; membrane, 51.5 26 0.00089 34.2 6.7 33 102-138 172-204 (431)
476 2xxa_A Signal recognition part 51.3 15 0.00051 36.0 4.9 43 70-115 101-145 (433)
477 1vht_A Dephospho-COA kinase; s 50.9 8.3 0.00029 33.5 2.7 17 70-86 5-21 (218)
478 2grj_A Dephospho-COA kinase; T 50.7 9.1 0.00031 32.7 2.8 39 71-119 14-52 (192)
479 2ff7_A Alpha-hemolysin translo 50.6 7.6 0.00026 34.8 2.4 18 68-85 34-51 (247)
480 3gfo_A Cobalt import ATP-bindi 50.4 7.4 0.00025 35.5 2.4 18 68-85 33-50 (275)
481 2pze_A Cystic fibrosis transme 50.3 7.7 0.00026 34.2 2.4 18 68-85 33-50 (229)
482 1rz3_A Hypothetical protein rb 50.2 8.2 0.00028 33.1 2.5 18 69-86 22-39 (201)
483 4eaq_A DTMP kinase, thymidylat 50.0 9.7 0.00033 33.5 3.0 19 68-86 25-43 (229)
484 3e70_C DPA, signal recognition 49.5 16 0.00054 34.3 4.6 18 69-86 129-146 (328)
485 1b0u_A Histidine permease; ABC 49.2 7.5 0.00026 35.2 2.2 18 68-85 31-48 (262)
486 1mv5_A LMRA, multidrug resista 49.1 6.4 0.00022 35.1 1.7 18 68-85 27-44 (243)
487 1ls1_A Signal recognition part 49.1 17 0.00059 33.4 4.7 36 69-108 98-133 (295)
488 1j8m_F SRP54, signal recogniti 49.0 15 0.00052 33.8 4.3 35 70-108 99-133 (297)
489 3tqf_A HPR(Ser) kinase; transf 49.0 8.1 0.00028 32.4 2.1 18 69-86 16-33 (181)
490 1vpl_A ABC transporter, ATP-bi 48.9 7.7 0.00026 35.0 2.2 18 68-85 40-57 (256)
491 2zu0_C Probable ATP-dependent 48.8 9.7 0.00033 34.5 2.9 18 68-85 45-62 (267)
492 1odf_A YGR205W, hypothetical 3 48.7 9.5 0.00032 35.1 2.8 17 70-86 32-48 (290)
493 1ji0_A ABC transporter; ATP bi 48.6 8.5 0.00029 34.2 2.4 18 68-85 31-48 (240)
494 2ixe_A Antigen peptide transpo 48.5 7.9 0.00027 35.2 2.2 18 68-85 44-61 (271)
495 1g6h_A High-affinity branched- 48.4 8.5 0.00029 34.6 2.4 18 68-85 32-49 (257)
496 3fmp_B ATP-dependent RNA helic 48.2 3.8 0.00013 40.9 0.0 73 101-202 333-406 (479)
497 2pcj_A ABC transporter, lipopr 48.1 7.8 0.00027 34.1 2.1 18 68-85 29-46 (224)
498 4g1u_C Hemin import ATP-bindin 48.0 8.5 0.00029 34.9 2.4 18 68-85 36-53 (266)
499 2yz2_A Putative ABC transporte 47.8 8.2 0.00028 35.0 2.2 18 68-85 32-49 (266)
500 2jeo_A Uridine-cytidine kinase 47.8 9.9 0.00034 33.8 2.8 18 69-86 25-42 (245)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.7e-60 Score=477.94 Aligned_cols=364 Identities=25% Similarity=0.411 Sum_probs=312.0
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc
Q 009641 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (530)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~ 97 (530)
|....+|+++ +|++.+.+.|+++||..|+|+|++||+.++. ++|++++||||||||++|++|+++.+...
T Consensus 52 p~~~~~f~~~------~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 52 PQPIQHFTSA------DLRDIIIDNVNKSGYKIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp CCCCCCGGGS------CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred CCCcCChhhc------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 4455677777 4999999999999999999999999998764 89999999999999999999999998764
Q ss_pred C----CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCC
Q 009641 98 A----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (530)
Q Consensus 98 ~----~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (530)
. ..++++||++||++|+.|+++.+++++...++++..++|+.....+.. .+..++
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~~~ 180 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---------------------CITRGC 180 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---------------------HHTTCC
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---------------------HhhcCC
Confidence 3 236789999999999999999999999888899999999988766543 234678
Q ss_pred cEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhcc
Q 009641 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (530)
Q Consensus 174 ~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (530)
+|+|+||++|.+++.+ ....+.++++||+||||++++.+|...+..++..+...
T Consensus 181 ~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~------------------------- 234 (434)
T 2db3_A 181 HVVIATPGRLLDFVDR-TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR------------------------- 234 (434)
T ss_dssp SEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC-------------------------
T ss_pred CEEEEChHHHHHHHHh-CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC-------------------------
Confidence 9999999999999987 45678899999999999999999999999888764321
Q ss_pred ccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCC
Q 009641 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333 (530)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 333 (530)
+..+++++|||++..+..+...++.++..+....... ....+.+....+....|...+..++.....
T Consensus 235 -----------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~- 301 (434)
T 2db3_A 235 -----------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG-ACSDVKQTIYEVNKYAKRSKLIEILSEQAD- 301 (434)
T ss_dssp -----------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC-CCTTEEEEEEECCGGGHHHHHHHHHHHCCT-
T ss_pred -----------CCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc-cccccceEEEEeCcHHHHHHHHHHHHhCCC-
Confidence 2338999999999888888888888888877654432 234455666667777888888888887654
Q ss_pred cEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC
Q 009641 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (530)
Q Consensus 334 ~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p 413 (530)
++||||++++.|+.+++.|...+ +.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p 378 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKE---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMP 378 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTT---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCC
Confidence 49999999999999999999876 889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhhhhcCCCCccEEEEeecc-hHHHHHHHHHHh
Q 009641 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKA 454 (530)
Q Consensus 414 ~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~-~~~~~~~~~~~~ 454 (530)
.+..+|+||+||+||.|+.|.+++|++++ +......+.+.+
T Consensus 379 ~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 379 SKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp SSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred CCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 99999999999999999999999999954 444444444444
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3e-56 Score=451.74 Aligned_cols=369 Identities=28% Similarity=0.427 Sum_probs=310.2
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc
Q 009641 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (530)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~ 97 (530)
|.+..+|+++. |++.+.++|..+||..|+|+|.++++.++. ++|+++.||||||||++|++|+++.+...
T Consensus 11 p~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~ 80 (417)
T 2i4i_A 11 PPHIESFSDVE------MGEIIMGNIELTRYTRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSD 80 (417)
T ss_dssp CCCCSSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CcccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhc
Confidence 56667788884 999999999999999999999999998764 89999999999999999999999888653
Q ss_pred CC-----------------CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccC
Q 009641 98 AV-----------------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 160 (530)
Q Consensus 98 ~~-----------------~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (530)
.. .++++||++||++|+.|+++.+++++...++++..++|+.....+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------- 147 (417)
T 2i4i_A 81 GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD------------- 147 (417)
T ss_dssp CCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH-------------
T ss_pred cccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH-------------
Confidence 21 235799999999999999999999988888999999999876665432
Q ss_pred CchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccc
Q 009641 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240 (530)
Q Consensus 161 ~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 240 (530)
+..+++|+|+||++|.+++.. ..+.+..+++||+||||++.+.++...+..++.......
T Consensus 148 --------~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~----------- 207 (417)
T 2i4i_A 148 --------LERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP----------- 207 (417)
T ss_dssp --------HTTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC-----------
T ss_pred --------hhCCCCEEEEChHHHHHHHHc-CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC-----------
Confidence 335679999999999999887 456788999999999999999888888888776422110
Q ss_pred cccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcH
Q 009641 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320 (530)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 320 (530)
....+++++|||++..+..+....+..+..+...... .....+.+.........+.
T Consensus 208 -----------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~ 263 (417)
T 2i4i_A 208 -----------------------KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKR 263 (417)
T ss_dssp -----------------------BTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGGHH
T ss_pred -----------------------cCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccHhHH
Confidence 0123789999999888887777777887766554332 2234455556666677788
Q ss_pred HHHHHHHHhc-CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCC
Q 009641 321 LYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399 (530)
Q Consensus 321 ~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi 399 (530)
..+..+++.. .++++||||++++.++.+++.|...+ +.+..+||++++.+|.++++.|++|+.+|||||+++++|+
T Consensus 264 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 340 (417)
T 2i4i_A 264 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGL 340 (417)
T ss_dssp HHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTS
T ss_pred HHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC---CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCC
Confidence 8888888876 56789999999999999999999865 8899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcC
Q 009641 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (530)
Q Consensus 400 Dip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 456 (530)
|+|++++||++++|.+..+|+||+||+||.|+.|.+++|+++.|...+.++.+.+..
T Consensus 341 dip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 341 DISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp CCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888887776643
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.7e-56 Score=448.05 Aligned_cols=360 Identities=24% Similarity=0.429 Sum_probs=309.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCc
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~ 101 (530)
.+|+++ +|++.+.+.|.++||..|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+... ..+
T Consensus 37 ~~f~~~------~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~ 105 (410)
T 2j0s_A 37 PTFDTM------GLREDLLRGIYAYGFEKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRE 105 (410)
T ss_dssp CSGGGG------CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCS
T ss_pred CCHhhc------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhc-cCC
Confidence 456666 4999999999999999999999999998775 78999999999999999999999887543 245
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~ 181 (530)
.++||++||++|+.|+++.+++++...++.+....|+.....+... +..+++|+|+||+
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~ivv~Tp~ 164 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---------------------LDYGQHVVAGTPG 164 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---------------------HHHCCSEEEECHH
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---------------------hhcCCCEEEcCHH
Confidence 6899999999999999999999998889999999999887665433 2346799999999
Q ss_pred HHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCC
Q 009641 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (530)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (530)
++.+++.+ ..+.+..+++||+||||++.+.++...+..++..++.
T Consensus 165 ~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~---------------------------------- 209 (410)
T 2j0s_A 165 RVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP---------------------------------- 209 (410)
T ss_dssp HHHHHHHT-TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCT----------------------------------
T ss_pred HHHHHHHh-CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCcc----------------------------------
Confidence 99999987 4567788999999999999998888888777765432
Q ss_pred CCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeecc-CCCcHHHHHHHHHhcCCCcEEEEcC
Q 009641 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTS 340 (530)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~iVf~~ 340 (530)
..+++++|||++.....+....+.++..+......... ..+.++..... ...+...+..++.....+++||||+
T Consensus 210 ----~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~ 284 (410)
T 2j0s_A 210 ----ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCN 284 (410)
T ss_dssp ----TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSC-TTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECS
T ss_pred ----CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccC-CCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEc
Confidence 23789999999888777777788888777654433332 33444444444 3448888888888888889999999
Q ss_pred ChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHH
Q 009641 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (530)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~ 420 (530)
+++.++.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+...|+
T Consensus 285 ~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~ 361 (410)
T 2j0s_A 285 TKRKVDWLTEKMREAN---FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYI 361 (410)
T ss_dssp SHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHH
T ss_pred CHHHHHHHHHHHHhCC---CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHH
Confidence 9999999999999865 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcC
Q 009641 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (530)
Q Consensus 421 Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 456 (530)
||+||+||.|++|.+++|+.++|...++++.+.++.
T Consensus 362 Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 362 HRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 397 (410)
T ss_dssp HHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred HhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999988877753
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.1e-54 Score=437.79 Aligned_cols=360 Identities=28% Similarity=0.468 Sum_probs=309.4
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC
Q 009641 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (530)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~ 100 (530)
..+|+++ +|++.+.++|.++||.+|+|+|.++++.++. ++++++.+|||+|||++|++|++..+.... .
T Consensus 20 ~~~f~~~------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~-~ 88 (400)
T 1s2m_A 20 GNTFEDF------YLKRELLMGIFEAGFEKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKL-N 88 (400)
T ss_dssp -CCGGGG------CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTS-C
T ss_pred cCChhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhcc-C
Confidence 3457777 4999999999999999999999999988774 789999999999999999999998876532 4
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||++|+++|+.|+++.+++++...++++....|+.....+... +...++|+|+||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~Ivv~T~ 147 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR---------------------LNETVHILVGTP 147 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH---------------------TTSCCSEEEECH
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH---------------------hcCCCCEEEEch
Confidence 55899999999999999999999998889999999998876655322 335679999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (530)
++|.+.+.+ ....+.++++||+||||++.+.++...+..++..++.
T Consensus 148 ~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~--------------------------------- 193 (400)
T 1s2m_A 148 GRVLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP--------------------------------- 193 (400)
T ss_dssp HHHHHHHHT-TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCS---------------------------------
T ss_pred HHHHHHHHh-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCc---------------------------------
Confidence 999998876 4566888999999999999988888888877765432
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcC
Q 009641 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (530)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~ 340 (530)
..+.+++|||++..........+..+..+..... .....+.++........+...+..++.....+++||||+
T Consensus 194 -----~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~ 266 (400)
T 1s2m_A 194 -----THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCN 266 (400)
T ss_dssp -----SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECS
T ss_pred -----CceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEe
Confidence 2378999999988877777777777766544332 223345566666667778888888888888899999999
Q ss_pred ChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHH
Q 009641 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (530)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~ 420 (530)
+++.++.+++.|...+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|+
T Consensus 267 ~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~ 343 (400)
T 1s2m_A 267 STNRVELLAKKITDLG---YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYL 343 (400)
T ss_dssp SHHHHHHHHHHHHHHT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHH
T ss_pred cHHHHHHHHHHHHhcC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHH
Confidence 9999999999999876 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcC
Q 009641 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (530)
Q Consensus 421 Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 456 (530)
||+||+||.|++|.+++|++++|...+.++.+.++.
T Consensus 344 Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 379 (400)
T 1s2m_A 344 HRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGT 379 (400)
T ss_dssp HHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred HhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCC
Confidence 999999999999999999999999999998888753
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.2e-54 Score=432.24 Aligned_cols=361 Identities=25% Similarity=0.359 Sum_probs=305.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCc
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~ 101 (530)
..|+++ +|++.+.++|.++||..|+|+|.++++.++. ++++++.+|||+|||++|++|++..+... ..+
T Consensus 8 ~~f~~~------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~ 76 (391)
T 1xti_A 8 SGFRDF------LLKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQ 76 (391)
T ss_dssp -CGGGG------CCCHHHHHHHHHHSCCSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCC-TTC
T ss_pred CChhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhccc-CCC
Confidence 457777 4999999999999999999999999988764 78999999999999999999999887653 245
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
.++||++||++|+.|+++.++++.... ++++..++|+.........+. ...++|+|+||
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------~~~~~iiv~T~ 136 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTP 136 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH--------------------HSCCSEEEECH
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh--------------------cCCCCEEEECH
Confidence 689999999999999999999998766 789999999987665543321 23469999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhh-HhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (530)
+++...+.+ ....+.++++||+||||++.+ .++...+..++...+.
T Consensus 137 ~~l~~~~~~-~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~-------------------------------- 183 (391)
T 1xti_A 137 GRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH-------------------------------- 183 (391)
T ss_dssp HHHHHHHHT-TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS--------------------------------
T ss_pred HHHHHHHHc-CCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC--------------------------------
Confidence 999998877 456688999999999999977 4666666666654331
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEc
Q 009641 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (530)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~ 339 (530)
..+++++|||++..........+..+..+............+.++........+...+..++.....+++||||
T Consensus 184 ------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~ 257 (391)
T 1xti_A 184 ------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV 257 (391)
T ss_dssp ------SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEEC
T ss_pred ------CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEe
Confidence 23789999999999888888888888777655443334455666666777778888899999888889999999
Q ss_pred CChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHH
Q 009641 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (530)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y 419 (530)
++++.++.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|
T Consensus 258 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~ 334 (391)
T 1xti_A 258 KSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334 (391)
T ss_dssp SCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHH
T ss_pred CcHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999875 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCccEEEEeecchH-HHHHHHHHHhc
Q 009641 420 IHRAGRTARAGQLGRCFTLLHKDEV-KRFKKLLQKAD 455 (530)
Q Consensus 420 ~Qr~GR~gR~g~~g~~i~~~~~~~~-~~~~~~~~~~~ 455 (530)
+||+||+||.|++|.+++|+++.+. ..+..+.+.+.
T Consensus 335 ~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 371 (391)
T 1xti_A 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 371 (391)
T ss_dssp HHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTT
T ss_pred HHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhc
Confidence 9999999999999999999998754 44565655543
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6.5e-55 Score=441.56 Aligned_cols=356 Identities=25% Similarity=0.404 Sum_probs=293.0
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
++++.+.+.|.++||..|+++|.++++.++. ++++++.+|||||||++|++|+++.+.... .+.++||++||++|
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L 120 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDL-KATQALVLAPTREL 120 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTS-CSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcC-CceeEEEEeChHHH
Confidence 4999999999999999999999999988775 889999999999999999999998886532 45689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCC
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~ 193 (530)
+.|+++.+++++...+..+....|+.........+ ....++|+|+||++|.+.+.+ ..+
T Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~iiv~T~~~l~~~l~~-~~~ 179 (414)
T 3eiq_A 121 AQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL--------------------QMEAPHIIVGTPGRVFDMLNR-RYL 179 (414)
T ss_dssp HHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHH--------------------TTTCCSEEEECHHHHHHHHHH-TSS
T ss_pred HHHHHHHHHHHhcccCceEEEEECCcchHHHHHHH--------------------hcCCCCEEEECHHHHHHHHHc-CCc
Confidence 99999999999988899999999988766654332 125679999999999999887 556
Q ss_pred CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEe
Q 009641 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (530)
Q Consensus 194 ~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (530)
.+..+++||+||||++.+.++...+..++..++. ..+++++|
T Consensus 180 ~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~i~~S 221 (414)
T 3eiq_A 180 SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS--------------------------------------NTQVVLLS 221 (414)
T ss_dssp CSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCT--------------------------------------TCEEEEEC
T ss_pred ccccCcEEEEECHHHhhccCcHHHHHHHHHhCCC--------------------------------------CCeEEEEE
Confidence 7788999999999999988888888877765532 23789999
Q ss_pred EeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHH
Q 009641 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (530)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~ 353 (530)
||++..........+.++..+...............+........+...+..++.....+++||||++++.++.+++.|.
T Consensus 222 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 301 (414)
T 3eiq_A 222 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMH 301 (414)
T ss_dssp SCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHH
Confidence 99998888888888888887766554433333333344444455688889999998888999999999999999999998
Q ss_pred hcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCc
Q 009641 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (530)
Q Consensus 354 ~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g 433 (530)
..+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|++|
T Consensus 302 ~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g 378 (414)
T 3eiq_A 302 ARD---FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 378 (414)
T ss_dssp TTT---CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------
T ss_pred hcC---CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc
Confidence 765 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeecchHHHHHHHHHHhcC
Q 009641 434 RCFTLLHKDEVKRFKKLLQKADN 456 (530)
Q Consensus 434 ~~i~~~~~~~~~~~~~~~~~~~~ 456 (530)
.+++|+++.+...+.++.+.++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~ 401 (414)
T 3eiq_A 379 VAINMVTEEDKRTLRDIETFYNT 401 (414)
T ss_dssp CEEEEECSTHHHHHHHHHHHTTC
T ss_pred eEEEEEcHHHHHHHHHHHHHHcC
Confidence 99999999999999988777653
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.2e-54 Score=433.72 Aligned_cols=381 Identities=22% Similarity=0.325 Sum_probs=305.1
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC
Q 009641 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (530)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~ 100 (530)
.++|+++ +|++.+.++|.++||..|+|+|.++++.++.. .++++++.+|||+|||++|++|++..+.... .
T Consensus 4 ~~~f~~~------~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~ 74 (395)
T 3pey_A 4 AKSFDEL------GLAPELLKGIYAMKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-A 74 (395)
T ss_dssp CCSSTTS------CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-C
T ss_pred ccCHhhC------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCC-C
Confidence 4678888 49999999999999999999999999988762 2389999999999999999999998876543 4
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||++||++|+.|+++.+++++...++.+....++..... ...+++|+|+||
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~iiv~T~ 129 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN-------------------------KQINAQVIVGTP 129 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT-------------------------SCBCCSEEEECH
T ss_pred CccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh-------------------------ccCCCCEEEEcH
Confidence 5689999999999999999999998888888888887654221 123579999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhh-HhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (530)
+++.+.+.+ ....+.++++||+||||++.+ .++...+..+...++.
T Consensus 130 ~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~-------------------------------- 176 (395)
T 3pey_A 130 GTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK-------------------------------- 176 (395)
T ss_dssp HHHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT--------------------------------
T ss_pred HHHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC--------------------------------
Confidence 999999876 556788999999999999977 5666666666654432
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEc
Q 009641 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (530)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~ 339 (530)
..+++++|||++..+..........+..+...............+........+...+..++.....+++||||
T Consensus 177 ------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~ 250 (395)
T 3pey_A 177 ------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFV 250 (395)
T ss_dssp ------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEEC
T ss_pred ------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEe
Confidence 23789999999888788877777777766555443333322223333334456777777778777889999999
Q ss_pred CChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC-----
Q 009641 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA----- 414 (530)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~----- 414 (530)
++++.++.+++.|...+ +.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++|+|.
T Consensus 251 ~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~ 327 (395)
T 3pey_A 251 ATKKTANVLYGKLKSEG---HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQ 327 (395)
T ss_dssp SCHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSS
T ss_pred CCHHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCC
Confidence 99999999999999875 7899999999999999999999999999999999999999999999999999998
Q ss_pred -ChhHHHHHHhhhhcCCCCccEEEEeecchHHH-HHHHHHHhcCCCCCCcCCChhHHhhhHHHHHHH
Q 009641 415 -YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR-FKKLLQKADNDSCPIHSIPSSLIESLRPVYKSV 479 (530)
Q Consensus 415 -s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (530)
++.+|+||+||+||.|+.|.+++|+.+.+... +..+.+.... .+...++....+.+....+++
T Consensus 328 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 392 (395)
T 3pey_A 328 ADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGD--IEMTRVPTDDWDEVEKIVKKV 392 (395)
T ss_dssp BCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTS--CCCEECCSSCHHHHHHHHHHH
T ss_pred CCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCC--ceeecCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999765444 4444444431 233445554455555544444
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.8e-54 Score=435.71 Aligned_cols=362 Identities=23% Similarity=0.361 Sum_probs=299.6
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC
Q 009641 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (530)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~ 98 (530)
.+..+|+++ ++++.+.++|.++||..|+|+|.++++.++.. .++++++.||||+|||++|++|+++.+....
T Consensus 22 ~~~~~f~~~------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~ 93 (412)
T 3fht_A 22 YSVKSFEEL------RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN 93 (412)
T ss_dssp CCSSCTGGG------TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTS
T ss_pred cccCCHhhC------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcC
Confidence 345667777 49999999999999999999999999988762 2489999999999999999999999887643
Q ss_pred CCcccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 009641 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (530)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 177 (530)
.+.++||++||++|+.|+++.++++.... ++.+....++...... ....++|+|
T Consensus 94 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ivv 148 (412)
T 3fht_A 94 -KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVI 148 (412)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT------------------------CCCCCSEEE
T ss_pred -CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh------------------------hcCCCCEEE
Confidence 45689999999999999999999997764 6777777776653221 124569999
Q ss_pred eCChHHHHHHhcCCCCCCCCccEEEEechhHhhh-HhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccc
Q 009641 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (530)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (530)
+||+++.+++.+.+.+.+.++++||+||||++.+ .++...+..+...++.
T Consensus 149 ~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~----------------------------- 199 (412)
T 3fht_A 149 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR----------------------------- 199 (412)
T ss_dssp ECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCT-----------------------------
T ss_pred ECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCC-----------------------------
Confidence 9999999999775667788999999999999976 5666666666655432
Q ss_pred cCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEee-ccCCCcHHHHHHHHHhcCCCcE
Q 009641 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKC 335 (530)
Q Consensus 257 ~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~l~~~l~~~~~~~~ 335 (530)
..+++++|||++.....+....+.++..+.......... .+.+.... .....+...+..++.....+++
T Consensus 200 ---------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 269 (412)
T 3fht_A 200 ---------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-TIKQYYVLCSSRDEKFQALCNLYGAITIAQA 269 (412)
T ss_dssp ---------TCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCT-TEEEEEEECSSHHHHHHHHHHHHHHHSSSEE
T ss_pred ---------CceEEEEEeecCHHHHHHHHHhcCCCeEEeecccccccc-CceEEEEEcCChHHHHHHHHHHHhhcCCCCE
Confidence 237999999999888888888888888776655443333 33333333 3345677788888888888999
Q ss_pred EEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC--
Q 009641 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-- 413 (530)
Q Consensus 336 iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p-- 413 (530)
||||++++.++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 270 lvf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~ 346 (412)
T 3fht_A 270 MIFCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 346 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBC
T ss_pred EEEeCCHHHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCC
Confidence 999999999999999999875 789999999999999999999999999999999999999999999999999999
Q ss_pred ----CChhHHHHHHhhhhcCCCCccEEEEeecch-HHHHHHHHHHhc
Q 009641 414 ----AYIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKLLQKAD 455 (530)
Q Consensus 414 ----~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~-~~~~~~~~~~~~ 455 (530)
.+..+|+||+||+||.|+.|.+++++++.+ ...+..+.+...
T Consensus 347 ~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 393 (412)
T 3fht_A 347 KDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 393 (412)
T ss_dssp SSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHT
T ss_pred CCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHC
Confidence 467899999999999999999999999775 566666666654
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.4e-53 Score=445.31 Aligned_cols=369 Identities=28% Similarity=0.420 Sum_probs=295.3
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC---CCcccEEEEcCc
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPT 110 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~---~~~~~~lil~Pt 110 (530)
.|++.+.++|.++||..|+|+|.++++.++.. .++++++.||||+|||++|++|+++.+.... ..+.++|||+||
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcch
Confidence 49999999999999999999999999888731 3789999999999999999999999987753 235689999999
Q ss_pred HHHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHH
Q 009641 111 RDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (530)
Q Consensus 111 ~~L~~Q~~~~l~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~ 186 (530)
++|+.|+++.+++++.. ....+....|+.........+. ...++|+|+||++|.++
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--------------------~~~~~IlV~Tp~~l~~~ 164 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN--------------------KLRPNIVIATPGRLIDV 164 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHH--------------------HHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHh--------------------cCCCCEEEECHHHHHHH
Confidence 99999999999998632 2467888888887665544322 24579999999999998
Q ss_pred HhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCc
Q 009641 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (530)
Q Consensus 187 l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (530)
+.+.....++.+++||+||||++++++|...+..++..++.... ...+.
T Consensus 165 l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~-------------------------------~~~~~ 213 (579)
T 3sqw_A 165 LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-------------------------------KSADN 213 (579)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS-------------------------------SCTTC
T ss_pred HHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc-------------------------------ccccC
Confidence 87632345778999999999999999999999888877653211 01123
Q ss_pred eeeEEEeEeecCChhhhhhhccCCceEEecCC---ccccCcccceeeEeeccCC-CcHH----HHHHHHHh-cCCCcEEE
Q 009641 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESK-LKPL----YLVALLQS-LGEEKCIV 337 (530)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~k~~----~l~~~l~~-~~~~~~iV 337 (530)
.+++++|||+++.+..+....+..+..+.... ........+.+........ .+.. .+...+.. ..+.++||
T Consensus 214 ~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 293 (579)
T 3sqw_A 214 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 293 (579)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 48999999999888888888887765543322 1222223333433333322 2222 22222332 45679999
Q ss_pred EcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChh
Q 009641 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (530)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~ 417 (530)
||+++..|+.+++.|......++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.++.
T Consensus 294 F~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~ 373 (579)
T 3sqw_A 294 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 373 (579)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTT
T ss_pred ECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHH
Confidence 99999999999999987633348899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 418 ~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
.|+||+||+||.|+.|.+++|+.+.|...++.+.+...
T Consensus 374 ~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 374 NYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 99999999999999999999999999998888877653
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.2e-52 Score=441.11 Aligned_cols=369 Identities=28% Similarity=0.422 Sum_probs=293.9
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC---CcccEEEEcCc
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPT 110 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~---~~~~~lil~Pt 110 (530)
.|++.+.++|.++||..|+|+|.++++.++.. .++|+++.||||||||++|++|+++.+..... .+.++|||+||
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Pt 155 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 155 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCc
Confidence 49999999999999999999999999888731 37899999999999999999999999877532 24589999999
Q ss_pred HHHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHH
Q 009641 111 RDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (530)
Q Consensus 111 ~~L~~Q~~~~l~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~ 186 (530)
++|+.|+++.++++... ....+....|+.........+. ..+++|+|+||++|.++
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------~~~~~Iiv~Tp~~l~~~ 215 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN--------------------KLRPNIVIATPGRLIDV 215 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHH--------------------HHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHh--------------------cCCCCEEEECcHHHHHH
Confidence 99999999999997542 2466788888877665543321 24679999999999998
Q ss_pred HhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCc
Q 009641 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (530)
Q Consensus 187 l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (530)
+.+.....++.+++|||||||++++++|...+..++..++.... ...+.
T Consensus 216 l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~-------------------------------~~~~~ 264 (563)
T 3i5x_A 216 LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-------------------------------KSADN 264 (563)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS-------------------------------SCTTC
T ss_pred HHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccc-------------------------------cCccC
Confidence 87633345778999999999999999999999888877653211 01124
Q ss_pred eeeEEEeEeecCChhhhhhhccCCceEEecCC---ccccCcccceeeEeeccCC-CcHHH----HHHHHHh-cCCCcEEE
Q 009641 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESK-LKPLY----LVALLQS-LGEEKCIV 337 (530)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~k~~~----l~~~l~~-~~~~~~iV 337 (530)
.+++++|||++..+..+....+..+..+.... ........+.+........ .+... +...+.. ....++||
T Consensus 265 ~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 344 (563)
T 3i5x_A 265 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 344 (563)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 48999999999888888888877765543321 1122223333333333322 22222 2222222 45779999
Q ss_pred EcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChh
Q 009641 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (530)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~ 417 (530)
||+++..|+.+++.|......++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.++.
T Consensus 345 F~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~ 424 (563)
T 3i5x_A 345 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 424 (563)
T ss_dssp ECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTT
T ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchh
Confidence 99999999999999987633348899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 418 ~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
+|+||+||+||.|+.|.+++|+.+.|...++.+.+...
T Consensus 425 ~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 425 NYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred hhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999998888876653
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-52 Score=415.44 Aligned_cols=353 Identities=28% Similarity=0.466 Sum_probs=299.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCc
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~ 101 (530)
.+|+++ +|++.+.++|+++||.+|+|+|+++++.++. .++++++.+|||+|||+++++|++..+... .+
T Consensus 6 ~~f~~~------~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~ 74 (367)
T 1hv8_A 6 MNFNEL------NLSDNILNAIRNKGFEKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN--NG 74 (367)
T ss_dssp CCGGGS------SCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SS
T ss_pred Cchhhc------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc--CC
Confidence 457777 4999999999999999999999999998774 237999999999999999999999877653 45
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~ 181 (530)
.++||++|+++|+.|+++.++++....++.+....|+.........+ .+++|+|+||+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~iiv~T~~ 132 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL----------------------KNANIVVGTPG 132 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH----------------------HTCSEEEECHH
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc----------------------CCCCEEEecHH
Confidence 68999999999999999999999888888999999988766553321 25699999999
Q ss_pred HHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCC
Q 009641 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (530)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (530)
++.+.+.. ....+.++++||+||||++.+.++...+..++...+.
T Consensus 133 ~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~---------------------------------- 177 (367)
T 1hv8_A 133 RILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK---------------------------------- 177 (367)
T ss_dssp HHHHHHHT-TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCS----------------------------------
T ss_pred HHHHHHHc-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCC----------------------------------
Confidence 99999886 4566888999999999999888887777777665432
Q ss_pred CCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCC
Q 009641 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (530)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s 341 (530)
..+.+++|||++..........+.++..+.... ...+.+.........+...+..++. ..+.++||||++
T Consensus 178 ----~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~ 247 (367)
T 1hv8_A 178 ----DKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKT 247 (367)
T ss_dssp ----SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSS
T ss_pred ----CceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECC
Confidence 227899999998777666666666665554332 2244555556666777888877776 456789999999
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHH
Q 009641 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (530)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Q 421 (530)
++.++.+++.|...+ +.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.++.+|+|
T Consensus 248 ~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q 324 (367)
T 1hv8_A 248 KRDTKELASMLRDIG---FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMH 324 (367)
T ss_dssp HHHHHHHHHHHHHTT---CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHhcC---CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhh
Confidence 999999999999875 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 422 r~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
|+||+||.|++|.+++++++.|...+..+.+.++
T Consensus 325 ~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 358 (367)
T 1hv8_A 325 RIGRTGRAGKKGKAISIINRREYKKLRYIERAMK 358 (367)
T ss_dssp HSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHT
T ss_pred cccccccCCCccEEEEEEcHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999998877765
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3e-54 Score=433.73 Aligned_cols=359 Identities=26% Similarity=0.446 Sum_probs=172.1
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC
Q 009641 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (530)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~ 100 (530)
..+|++++ |++.+.+.|.++||.+|+|+|+++++.++. ++++++.+|||+|||++|++|+++.+... ..
T Consensus 20 ~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-~~ 88 (394)
T 1fuu_A 20 VYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VK 88 (394)
T ss_dssp CCSSGGGC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-CC
T ss_pred cCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhcc-CC
Confidence 34577774 999999999999999999999999988775 78999999999999999999999887653 24
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||++|+++|+.|+++.+++++...++++..++|+.........+ .+++|+|+||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------~~~~i~v~T~ 146 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----------------------RDAQIVVGTP 146 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH----------------------HHCSEEEECH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc----------------------CCCCEEEECH
Confidence 568999999999999999999999888889999999998766553321 1459999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (530)
+++.+.+.+ ..+.+.++++||+||||++.+.++...+..++..++.
T Consensus 147 ~~l~~~~~~-~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~--------------------------------- 192 (394)
T 1fuu_A 147 GRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP--------------------------------- 192 (394)
T ss_dssp HHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT---------------------------------
T ss_pred HHHHHHHHh-CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCC---------------------------------
Confidence 999999886 4566788999999999999888888888877766542
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeec-cCCCcHHHHHHHHHhcCCCcEEEEc
Q 009641 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVFT 339 (530)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~iVf~ 339 (530)
..+.+++|||++..........+..+..+......... ..+.++.... ....+...+..++.....+++||||
T Consensus 193 -----~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~ 266 (394)
T 1fuu_A 193 -----TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL-EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFC 266 (394)
T ss_dssp -----TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------------------
T ss_pred -----CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccC-CCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEE
Confidence 22789999999887777777777777766554433222 2223333322 3334666777777777778999999
Q ss_pred CChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHH
Q 009641 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (530)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y 419 (530)
++++.++.+++.|...+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++.+|
T Consensus 267 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~ 343 (394)
T 1fuu_A 267 NTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENY 343 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHcC---CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999998765 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 420 ~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
+||+||+||.|++|.+++|++++|...+..+.+.++
T Consensus 344 ~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 379 (394)
T 1fuu_A 344 IHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 379 (394)
T ss_dssp ------------------------------------
T ss_pred HHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999887777766543
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.5e-54 Score=446.40 Aligned_cols=358 Identities=24% Similarity=0.379 Sum_probs=166.5
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC
Q 009641 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (530)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~ 100 (530)
..+|+++ +|++.+.+.|.++||..|+|+|.+|++.++.. .++++++.||||||||++|++|+++.+.... .
T Consensus 91 ~~~f~~~------~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-~ 161 (479)
T 3fmp_B 91 VKSFEEL------RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-K 161 (479)
T ss_dssp CCCSGGG------TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-C
T ss_pred cCCHHHc------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-C
Confidence 3456665 49999999999999999999999999988752 2489999999999999999999998886643 4
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
++++||++||++|+.|+++.++++.... ++.+....++...... ....++|+|+|
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~Ivv~T 217 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGT 217 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEEC
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc------------------------ccCCCCEEEEC
Confidence 5589999999999999999999987764 5777777776643221 12346999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHhhh-HhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccC
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (530)
|++|.+++.+.+.+.+.++++||+||||++.+ .++...+..+...++.
T Consensus 218 p~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~------------------------------- 266 (479)
T 3fmp_B 218 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR------------------------------- 266 (479)
T ss_dssp HHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCT-------------------------------
T ss_pred chHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCc-------------------------------
Confidence 99999999876667789999999999999986 5666666666654432
Q ss_pred CCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeec-cCCCcHHHHHHHHHhcCCCcEEE
Q 009641 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIV 337 (530)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~iV 337 (530)
..+++++|||++.....+....+..+..+......... ..+.+....+ ....+...+..++.....+++||
T Consensus 267 -------~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lv 338 (479)
T 3fmp_B 267 -------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL-DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMI 338 (479)
T ss_dssp -------TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------------------
T ss_pred -------cceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCc-CCceEEEEEeCCHHHHHHHHHHHHhhccCCceEE
Confidence 23899999999988888888888888877665543333 2333333333 34567777778777777889999
Q ss_pred EcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC---
Q 009641 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA--- 414 (530)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~--- 414 (530)
||+++..++.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.
T Consensus 339 F~~s~~~~~~l~~~L~~~~---~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~ 415 (479)
T 3fmp_B 339 FCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD 415 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCcHHHHHHHHHHHHhCC---ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCc
Confidence 9999999999999998765 8899999999999999999999999999999999999999999999999999994
Q ss_pred ---ChhHHHHHHhhhhcCCCCccEEEEeecch-HHHHHHHHHH
Q 009641 415 ---YIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKLLQK 453 (530)
Q Consensus 415 ---s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~-~~~~~~~~~~ 453 (530)
+..+|+||+||+||.|+.|.+++|+++.+ ...+..+.+.
T Consensus 416 ~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~ 458 (479)
T 3fmp_B 416 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEH 458 (479)
T ss_dssp -------------------------------------------
T ss_pred cCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHH
Confidence 66899999999999999999999998775 4444444333
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6e-51 Score=400.77 Aligned_cols=334 Identities=28% Similarity=0.429 Sum_probs=274.1
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
|++.+.++|+++||..|+|+|+++++.++. ++++++.+|||+|||++|++|+++. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHH
Confidence 578999999999999999999999988774 7899999999999999999998863 34799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCC
Q 009641 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
.|+++.+++++...+.++..++|+.........+ ..++|+|+||++|.+.+.+ ....
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~i~v~T~~~l~~~~~~-~~~~ 126 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV----------------------RNADIVVATPGRLLDLWSK-GVID 126 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH----------------------TTCSEEEECHHHHHHHHHT-TSCC
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc----------------------CCCCEEEECHHHHHHHHHc-CCcc
Confidence 9999999999888889999999988766553321 3479999999999998876 4566
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
+.++++||+||||++.+.++...+..++...+. ..+.+++||
T Consensus 127 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~SA 168 (337)
T 2z0m_A 127 LSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN--------------------------------------RKITGLFSA 168 (337)
T ss_dssp GGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT--------------------------------------CSEEEEEES
T ss_pred hhhCcEEEEEChHHhhccccHHHHHHHHhhCCc--------------------------------------ccEEEEEeC
Confidence 788999999999999988888888777765432 126788999
Q ss_pred eecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHh
Q 009641 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (530)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~ 354 (530)
|++..........+..+..+..... ...+.......... .......+....++++||||++++.++.+++.|.
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~- 241 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYEEIEACIG----LANVEHKFVHVKDD--WRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD- 241 (337)
T ss_dssp CCCHHHHHHHHHHSCSCEEEECSGG----GGGEEEEEEECSSS--SHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-
T ss_pred cCCHHHHHHHHHhcCCceeeecccc----cCCceEEEEEeChH--HHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-
Confidence 9988877777666666655533211 12222333333322 2233456666778899999999999999988775
Q ss_pred cCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCcc
Q 009641 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (530)
Q Consensus 355 ~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~ 434 (530)
.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|++|.
T Consensus 242 ------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~ 315 (337)
T 2z0m_A 242 ------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGE 315 (337)
T ss_dssp ------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEE
T ss_pred ------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecchHHHHHHHHHHh
Q 009641 435 CFTLLHKDEVKRFKKLLQKA 454 (530)
Q Consensus 435 ~i~~~~~~~~~~~~~~~~~~ 454 (530)
+++|+. .|...++++.+.+
T Consensus 316 ~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 316 AITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp EEEEES-SCHHHHHHHC---
T ss_pred EEEEEe-CcHHHHHHHHHHh
Confidence 999999 7767677665443
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.7e-50 Score=415.30 Aligned_cols=348 Identities=22% Similarity=0.301 Sum_probs=272.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~ 100 (530)
.+|++++ |++.+.+.|++ +||..|+|+|.++++.++. ++|+++.+|||+|||++|++|++..
T Consensus 2 ~~fe~l~------L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~~------- 64 (523)
T 1oyw_A 2 AQAEVLN------LESGAKQVLQETFGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALLL------- 64 (523)
T ss_dssp CCCCCSS------HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHS-------
T ss_pred CChhhCC------CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHHh-------
Confidence 5677774 89999999999 8999999999999998875 8899999999999999999998842
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
..++||++|+++|+.|+.+.++.+ ++.+..++|+.......... .......++|+|+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVM-----------------TGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHH-----------------HHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHH-----------------HHHhcCCCCEEEECH
Confidence 236999999999999999999886 77888888887655442211 111234579999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhhHh--hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (530)
++|...... ..+...++++|||||||++.+++ |...+..+......
T Consensus 124 e~l~~~~~~-~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------- 171 (523)
T 1oyw_A 124 ERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------------- 171 (523)
T ss_dssp HHHTSTTHH-HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH-------------------------------
T ss_pred HHHhChHHH-HHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh-------------------------------
Confidence 998532111 11234679999999999997765 33322222111100
Q ss_pred CCCCCCCceeeEEEeEeecCChhh-hh-hhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEE
Q 009641 259 FKDKPYPRLVKMVLSATLTQDPNK-LA-QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336 (530)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~i 336 (530)
.+..+++++|||++..... +. ...+.++..+.......+ ..+.......+...+..++....+.++|
T Consensus 172 -----~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~------l~~~v~~~~~~~~~l~~~l~~~~~~~~I 240 (523)
T 1oyw_A 172 -----FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN------IRYMLMEKFKPLDQLMRYVQEQRGKSGI 240 (523)
T ss_dssp -----CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTT------EEEEEEECSSHHHHHHHHHHHTTTCCEE
T ss_pred -----CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCc------eEEEEEeCCCHHHHHHHHHHhcCCCcEE
Confidence 1234789999999876544 22 234455655543332221 1222333456777888888877788999
Q ss_pred EEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCCh
Q 009641 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416 (530)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~ 416 (530)
|||+|++.++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.|.
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~ 317 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKG---ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSH
T ss_pred EEeCCHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCH
Confidence 99999999999999999876 889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHH
Q 009641 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (530)
Q Consensus 417 ~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~ 453 (530)
++|+||+||+||.|.+|.+++|+++.|...++.++..
T Consensus 318 ~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 318 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999998877777654
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.9e-50 Score=418.90 Aligned_cols=336 Identities=20% Similarity=0.284 Sum_probs=262.9
Q ss_pred CCCHHHHHHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 34 CLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 34 ~l~~~i~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
++++.+.+.|++ |||..|+|+|.++++.++. |+|+++.+|||+|||++|++|++.. ..++|||+|+++
T Consensus 27 ~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~~-------~g~~lVisP~~~ 95 (591)
T 2v1x_A 27 PWSGKVKDILQNVFKLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALCS-------DGFTLVICPLIS 95 (591)
T ss_dssp TTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHTS-------SSEEEEECSCHH
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHHc-------CCcEEEEeCHHH
Confidence 388999999998 7999999999999998875 8999999999999999999999742 337999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh---cCCCcEEEeCChHHH-----
Q 009641 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL---QSAVDILVATPGRLM----- 184 (530)
Q Consensus 113 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ili~Tp~~l~----- 184 (530)
|+.|+.+.++++ ++++..++|+....+.... +..+ ...++|+|+||++|.
T Consensus 96 L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~------------------~~~l~~~~~~~~Ilv~Tpe~L~~~~~~ 153 (591)
T 2v1x_A 96 LMEDQLMVLKQL----GISATMLNASSSKEHVKWV------------------HAEMVNKNSELKLIYVTPEKIAKSKMF 153 (591)
T ss_dssp HHHHHHHHHHHH----TCCEEECCSSCCHHHHHHH------------------HHHHHCTTCCCCEEEECHHHHHSCHHH
T ss_pred HHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHH------------------HHHhhcccCCCCEEEEChhHhhccHHH
Confidence 999999999987 7889999998876554321 1222 356899999999874
Q ss_pred -HHHhcCCCCCCCCccEEEEechhHhhhHh--hhhHHHH---HHhhcccCcccccccccccccccccchhhhhccccccC
Q 009641 185 -DHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPT---VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (530)
Q Consensus 185 -~~l~~~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (530)
+.+.+ ...+..+++|||||||++.+++ |...+.. +...
T Consensus 154 ~~~l~~--~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~---------------------------------- 197 (591)
T 2v1x_A 154 MSRLEK--AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ---------------------------------- 197 (591)
T ss_dssp HHHHHH--HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH----------------------------------
T ss_pred HHHHHh--hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh----------------------------------
Confidence 23332 2345679999999999998765 3332221 1111
Q ss_pred CCCCCCCceeeEEEeEeecCChhhhhhhcc--CCceEEecCCccccCcccceeeEeeccCC---CcHHHHHHHHHh-cCC
Q 009641 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVALLQS-LGE 332 (530)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~-~~~ 332 (530)
.+..+++++|||++..+.......+ ..+..+.......++ .+....... .+...+..++.. ..+
T Consensus 198 -----~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl-----~~~v~~~~~~~~~~~~~l~~~l~~~~~~ 267 (591)
T 2v1x_A 198 -----FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNL-----YYEVRQKPSNTEDFIEDIVKLINGRYKG 267 (591)
T ss_dssp -----CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTE-----EEEEEECCSSHHHHHHHHHHHHTTTTTT
T ss_pred -----CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCccc-----EEEEEeCCCcHHHHHHHHHHHHHHhccC
Confidence 1234789999999877655444333 344444433322211 222222222 234455566653 367
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC
Q 009641 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412 (530)
Q Consensus 333 ~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~ 412 (530)
.++||||++++.++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++++
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~ 344 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNLG---IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM 344 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC
T ss_pred CCeEEEeCcHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC
Confidence 899999999999999999999876 89999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHH
Q 009641 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451 (530)
Q Consensus 413 p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~ 451 (530)
|.|.+.|+||+||+||.|++|.|++|+++.|...+..++
T Consensus 345 p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 345 SKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999887766654
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-51 Score=422.51 Aligned_cols=352 Identities=22% Similarity=0.318 Sum_probs=246.7
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
++++.+.+.+.+.||..|+++|.+|++.++.. .++++++.||||||||++|+++++..+.... .+.++||++|+++|
T Consensus 125 ~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~-~~~~vLvl~P~~~L 201 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASV-PKPQAICLAPSREL 201 (508)
T ss_dssp --------------CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-CSCCEEEECSCHHH
T ss_pred ccccccccccccccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCC-CCceEEEEECcHHH
Confidence 58889999999999999999999999988762 2489999999999999999999999886643 45689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCC
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~ 193 (530)
+.|+++.+++++...++.+....++..... ....++|+|+||+++.+.+.+ ..+
T Consensus 202 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~Ivv~T~~~l~~~l~~-~~~ 255 (508)
T 3fho_A 202 ARQIMDVVTEMGKYTEVKTAFGIKDSVPKG-------------------------AKIDAQIVIGTPGTVMDLMKR-RQL 255 (508)
T ss_dssp HHHHHHHHHHHSTTSSCCEEC-----------------------------------CCCCSEEEECHHHHHHHHHT-TCS
T ss_pred HHHHHHHHHHhCCccCeeEEEEeCCccccc-------------------------ccCCCCEEEECHHHHHHHHHc-CCc
Confidence 999999999998777666665555433211 123579999999999998887 456
Q ss_pred CCCCccEEEEechhHhhh-HhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 009641 194 TLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (530)
Q Consensus 194 ~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (530)
.+.++++||+||||++.+ .++...+..+...++. ..+++++
T Consensus 256 ~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~i~l 297 (508)
T 3fho_A 256 DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR--------------------------------------NTQIVLF 297 (508)
T ss_dssp CCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT--------------------------------------TCEEEEE
T ss_pred cccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc--------------------------------------CCeEEEE
Confidence 788999999999999977 5666666666665432 2378999
Q ss_pred eEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHH
Q 009641 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (530)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L 352 (530)
|||++.....+.......+..+...............+........+...+..++.....+++||||+++.+++.+++.|
T Consensus 298 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 298 SATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp ESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred eCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 99999888888888877777765554433332222333333345567777888888778899999999999999999999
Q ss_pred HhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC------CChhHHHHHHhhh
Q 009641 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRT 426 (530)
Q Consensus 353 ~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p------~s~~~y~Qr~GR~ 426 (530)
...+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++| .+...|+||+||+
T Consensus 378 ~~~~---~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRa 454 (508)
T 3fho_A 378 TADG---HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 454 (508)
T ss_dssp TTTT---CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCC
T ss_pred HhCC---CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhc
Confidence 8765 789999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred hcCCCCccEEEEeecc-hHHHHHHHHHHhc
Q 009641 427 ARAGQLGRCFTLLHKD-EVKRFKKLLQKAD 455 (530)
Q Consensus 427 gR~g~~g~~i~~~~~~-~~~~~~~~~~~~~ 455 (530)
||.|+.|.+++|+.+. +...+..+.+...
T Consensus 455 gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~ 484 (508)
T 3fho_A 455 GRFGRVGVSINFVHDKKSWEEMNAIQEYFQ 484 (508)
T ss_dssp C-----CEEEEEECTTTSSSSHHHHHHHSC
T ss_pred CCCCCCcEEEEEEeChHHHHHHHHHHHHHC
Confidence 9999999999999854 4555666655543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.6e-48 Score=392.51 Aligned_cols=340 Identities=18% Similarity=0.264 Sum_probs=251.4
Q ss_pred HHHHHHHHH-CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHH
Q 009641 37 PRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (530)
Q Consensus 37 ~~i~~~l~~-~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~ 115 (530)
..+.+.+++ +|| +|+|+|.++++.++. ++|+++.||||||||++|++|++..+. .+.++||++||++|+.
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHH
Confidence 345566666 687 899999999988764 789999999999999999998887662 3558999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCChHHHHHHhcCCCCC
Q 009641 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 116 Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
|+++.+++++. .++++..++|+.+..+.... +..+.. .++|+|+||++|.+++.. +.
T Consensus 79 q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~------------------~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~ 136 (414)
T 3oiy_A 79 QTLERLQKLAD-EKVKIFGFYSSMKKEEKEKF------------------EKSFEEDDYHILVFSTQFVSKNREK---LS 136 (414)
T ss_dssp HHHHHHHHHCC-SSCCEEECCTTSCHHHHHHH------------------HHHHHHTCCSEEEEEHHHHHHCHHH---HT
T ss_pred HHHHHHHHHcc-CCceEEEEECCCChhhHHHH------------------HHHhhcCCCCEEEECHHHHHHHHHH---hc
Confidence 99999999988 78999999999987443211 122333 389999999999888764 45
Q ss_pred CCCccEEEEechhHhhh-----------HhhhhH-HHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCC
Q 009641 195 LEHLCYLVVDETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~-----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (530)
+.++++||+||||++.. .+|... +..++..++..... ....
T Consensus 137 ~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~---------------------------~~l~ 189 (414)
T 3oiy_A 137 QKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIY---------------------------ERPK 189 (414)
T ss_dssp TCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCC---------------------------CCCT
T ss_pred cccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhh---------------------------hhcc
Confidence 66899999999998764 344444 56666655411000 0000
Q ss_pred CCCceeeEEEeEe-ecCChhh-hhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcC
Q 009641 263 PYPRLVKMVLSAT-LTQDPNK-LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (530)
Q Consensus 263 ~~~~~~~i~~SaT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~ 340 (530)
..+..+++++||| .+..... +...... +..... ......+.+..... .+...+..+++.. ++++||||+
T Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~ 260 (414)
T 3oiy_A 190 NLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL-VSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQ 260 (414)
T ss_dssp TCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCC-CCCCCSEEEEEESS---CCHHHHHHHHHHH-CSSEEEEES
T ss_pred cCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcc-ccccccchheeecc---CHHHHHHHHHHHc-CCCEEEEEC
Confidence 0133489999999 4444432 2221111 111111 11222333443333 5677778877773 589999999
Q ss_pred ChHHHHHHHHHHHhcCCCcceEE-EccccCCHHHHHHHHHHHhcCCccEEEE----ecccccCCCCCC-CCEEEEccCC-
Q 009641 341 SVESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKP- 413 (530)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~-~~h~~~~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiDip~-~~~VI~~~~p- 413 (530)
++..|+.+++.|...+ +.+. .+||. +|. ++.|++|+.+|||| |+++++|+|+|+ +++||+||+|
T Consensus 261 ~~~~~~~l~~~L~~~~---~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~ 331 (414)
T 3oiy_A 261 TEEEGKELYEYLKRFK---FNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 331 (414)
T ss_dssp SHHHHHHHHHHHHHTT---CCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCT
T ss_pred CHHHHHHHHHHHHHcC---CceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCC
Confidence 9999999999999876 7887 88985 344 99999999999999 999999999999 9999999999
Q ss_pred -CChhHHHHHHhhhhcCC----CCccEEEEeecchHHHHHHHHHHh
Q 009641 414 -AYIKTYIHRAGRTARAG----QLGRCFTLLHKDEVKRFKKLLQKA 454 (530)
Q Consensus 414 -~s~~~y~Qr~GR~gR~g----~~g~~i~~~~~~~~~~~~~~~~~~ 454 (530)
.+..+|+||+||+||.| +.|.+++|+ +|...+..+.+.+
T Consensus 332 ~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~ 375 (414)
T 3oiy_A 332 GPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRL 375 (414)
T ss_dssp TTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHh
Confidence 99999999999999987 579999999 4445555554444
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.5e-45 Score=393.85 Aligned_cols=337 Identities=21% Similarity=0.276 Sum_probs=259.5
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
+|++.+.+.++++||..|+|+|.++++.++ ..+++++++||||||||+++.+|+++.+... +.+++|++|+++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raL 80 (720)
T 2zj8_A 7 RVDERIKSTLKERGIESFYPPQAEALKSGI---LEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKAL 80 (720)
T ss_dssp CSCHHHHHHHHHTTCCBCCHHHHHHHTTTG---GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGG
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh---cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHH
Confidence 399999999999999999999999977622 3489999999999999999999999888742 3589999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCC
Q 009641 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (530)
Q Consensus 114 ~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~ 193 (530)
+.|+++.++++.. .|++++..+|+...... ....++|+|+||+++..++.+ ...
T Consensus 81 a~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~~~~-~~~ 134 (720)
T 2zj8_A 81 AEEKFQEFQDWEK-IGLRVAMATGDYDSKDE------------------------WLGKYDIIIATAEKFDSLLRH-GSS 134 (720)
T ss_dssp HHHHHHHTGGGGG-GTCCEEEECSCSSCCCG------------------------GGGGCSEEEECHHHHHHHHHH-TCT
T ss_pred HHHHHHHHHHHHh-cCCEEEEecCCCCcccc------------------------ccCCCCEEEECHHHHHHHHHc-Chh
Confidence 9999999976544 48999999997653321 113569999999999998887 344
Q ss_pred CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEe
Q 009641 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (530)
Q Consensus 194 ~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (530)
.++++++||+||||++.+.+++..++.++..++. ..+++++|
T Consensus 135 ~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~--------------------------------------~~~ii~lS 176 (720)
T 2zj8_A 135 WIKDVKILVADEIHLIGSRDRGATLEVILAHMLG--------------------------------------KAQIIGLS 176 (720)
T ss_dssp TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT--------------------------------------TBEEEEEE
T ss_pred hhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc--------------------------------------CCeEEEEc
Confidence 5788999999999999888888888888887652 12799999
Q ss_pred EeecCChhhhhhhccCCceEEecCCccccCcccc--eeeEeecc-----CCCcHHHHHHHHHhcCCCcEEEEcCChHHHH
Q 009641 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICE-----SKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (530)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~ 346 (530)
||+++ ...+..+..... +.......++.... ........ ...+...+...+. .++++||||++++.++
T Consensus 177 ATl~n-~~~~~~~l~~~~--~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~ 251 (720)
T 2zj8_A 177 ATIGN-PEELAEWLNAEL--IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAE 251 (720)
T ss_dssp CCCSC-HHHHHHHTTEEE--EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHH
T ss_pred CCcCC-HHHHHHHhCCcc--cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHH
Confidence 99974 444444332111 11111111110000 00001111 2344555555554 4689999999999999
Q ss_pred HHHHHHHhcCCC------------------------------cceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccc
Q 009641 347 RLCTLLNHFGEL------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (530)
Q Consensus 347 ~l~~~L~~~~~~------------------------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~ 396 (530)
.++..|.+.... ..++..+||+|++.+|..+++.|++|..+|||||++++
T Consensus 252 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~ 331 (720)
T 2zj8_A 252 RVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLS 331 (720)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTG
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhh
Confidence 999998753110 12488999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEE----cc----CCCChhHHHHHHhhhhcCC--CCccEEEEeecchHH
Q 009641 397 RGMDVEGVNNVVN----YD----KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEVK 445 (530)
Q Consensus 397 ~GiDip~~~~VI~----~~----~p~s~~~y~Qr~GR~gR~g--~~g~~i~~~~~~~~~ 445 (530)
+|||+|++++||+ || .|.+..+|+||+||+||.| ..|.|++++++.+..
T Consensus 332 ~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 332 AGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp GGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred ccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9999999999998 66 5889999999999999988 468999999988743
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-44 Score=389.89 Aligned_cols=342 Identities=21% Similarity=0.274 Sum_probs=256.7
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC
Q 009641 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (530)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~ 99 (530)
....|++++ |++.+.+.++++||..|+|+|.++++.++ ..+++++++||||||||+++.+++++.+...
T Consensus 6 ~~~~~~~l~------l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-- 74 (715)
T 2va8_A 6 EWMPIEDLK------LPSNVIEIIKKRGIKKLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-- 74 (715)
T ss_dssp CCCBGGGSS------SCHHHHHHHHTTSCCBCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--
T ss_pred ccCcHHHcC------CCHHHHHHHHhCCCCCCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--
Confidence 334577774 99999999999999999999999987633 3589999999999999999999999887742
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
+.+++|++|+++|+.|+++.++.+. ..|++++..+|+....+. . ...++|+|+|
T Consensus 75 -~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~-----------------------~-~~~~~Iiv~T 128 (715)
T 2va8_A 75 -GGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA-----------------------W-LKNYDIIITT 128 (715)
T ss_dssp -CSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG-----------------------G-GGGCSEEEEC
T ss_pred -CCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh-----------------------h-cCCCCEEEEc
Confidence 4589999999999999999996554 348999999998653321 0 1356999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCC
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (530)
|+++...+.+ ....++++++||+||||.+.+..++..++.++..++
T Consensus 129 pe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~--------------------------------- 174 (715)
T 2va8_A 129 YEKLDSLWRH-RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK--------------------------------- 174 (715)
T ss_dssp HHHHHHHHHH-CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHhC-ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc---------------------------------
Confidence 9999998887 334478899999999999987788888888877654
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccce-------e-eEeecc--------CCCcHHHH
Q 009641 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE-------S-YKLICE--------SKLKPLYL 323 (530)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~--------~~~k~~~l 323 (530)
..+++++|||+++ ...+..+.. .+. +.......++..... . .....+ ...+...+
T Consensus 175 ------~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (715)
T 2va8_A 175 ------RRNLLALSATISN-YKQIAKWLG-AEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYT 245 (715)
T ss_dssp ------TSEEEEEESCCTT-HHHHHHHHT-CEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHH
T ss_pred ------cCcEEEEcCCCCC-HHHHHHHhC-CCc-cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHH
Confidence 1279999999964 444444332 211 111111111100000 0 000011 12223333
Q ss_pred HHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCC---------------------------------cceEEEccccCC
Q 009641 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------------------RIKIKEYSGLQR 370 (530)
Q Consensus 324 ~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~---------------------------------~~~v~~~h~~~~ 370 (530)
...+. .++++||||++++.++.+++.|...... ...+..+||+|+
T Consensus 246 ~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~ 323 (715)
T 2va8_A 246 LDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLS 323 (715)
T ss_dssp HHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCC
Confidence 33332 5689999999999999999999864211 135889999999
Q ss_pred HHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEE----cc-------CCCChhHHHHHHhhhhcCCC--CccEEE
Q 009641 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD-------KPAYIKTYIHRAGRTARAGQ--LGRCFT 437 (530)
Q Consensus 371 ~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~----~~-------~p~s~~~y~Qr~GR~gR~g~--~g~~i~ 437 (530)
..+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.|..+|.||+||+||.|. .|.|++
T Consensus 324 ~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 403 (715)
T 2va8_A 324 KALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIV 403 (715)
T ss_dssp HHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 999999999999999999999999999999999999999 98 79999999999999999884 699999
Q ss_pred Eeecch
Q 009641 438 LLHKDE 443 (530)
Q Consensus 438 ~~~~~~ 443 (530)
++++.+
T Consensus 404 l~~~~~ 409 (715)
T 2va8_A 404 VVRDKE 409 (715)
T ss_dssp ECSCGG
T ss_pred EeCCch
Confidence 998876
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.8e-45 Score=395.08 Aligned_cols=336 Identities=24% Similarity=0.293 Sum_probs=254.8
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
|++.+.+.++++||.+|+|+|.++++.+. .+++++++||||||||+++.+++++.+.. +.+++|++|+++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La 81 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALA 81 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHH
Confidence 88999999999999999999999998854 48999999999999999999999988764 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCC
Q 009641 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
.|+++.++.+.. .|++++..+|+...... ....++|+|+||+++...+.+ ....
T Consensus 82 ~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~l~~-~~~~ 135 (702)
T 2p6r_A 82 GEKYESFKKWEK-IGLRIGISTGDYESRDE------------------------HLGDCDIIVTTSEKADSLIRN-RASW 135 (702)
T ss_dssp HHHHHHHTTTTT-TTCCEEEECSSCBCCSS------------------------CSTTCSEEEEEHHHHHHHHHT-TCSG
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCCCcchh------------------------hccCCCEEEECHHHHHHHHHc-ChhH
Confidence 999999965543 48899999998753221 113579999999999998887 3344
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
++++++||+||||.+.+.+++..++.++..+.... +..+++++||
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~-----------------------------------~~~~ii~lSA 180 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-----------------------------------KALRVIGLSA 180 (702)
T ss_dssp GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC-----------------------------------TTCEEEEEEC
T ss_pred HhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC-----------------------------------cCceEEEECC
Confidence 78899999999999988888888888877654211 2348999999
Q ss_pred eecCChhhhhhhccCCceEEecCCccccCcccc--eeeEeeccCC-------CcHHHHHHHHHhcCCCcEEEEcCChHHH
Q 009641 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESK-------LKPLYLVALLQSLGEEKCIVFTSSVEST 345 (530)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~k~~~l~~~l~~~~~~~~iVf~~s~~~~ 345 (530)
|+++ ...+..+.. .+. +.......++.... .......... .+...+...+. .++++||||++++.+
T Consensus 181 Tl~n-~~~~~~~l~-~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~ 255 (702)
T 2p6r_A 181 TAPN-VTEIAEWLD-ADY-YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGA 255 (702)
T ss_dssp CCTT-HHHHHHHTT-CEE-EECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHH
T ss_pred CcCC-HHHHHHHhC-CCc-ccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHH
Confidence 9974 455554432 222 11111111111000 0000001111 13344444443 478999999999999
Q ss_pred HHHHHHHHhcCC---------------------------CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccC
Q 009641 346 HRLCTLLNHFGE---------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398 (530)
Q Consensus 346 ~~l~~~L~~~~~---------------------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~G 398 (530)
+.+++.|..... .+.++..+||+|++.+|..+++.|++|..+|||||+++++|
T Consensus 256 ~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~G 335 (702)
T 2p6r_A 256 EKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAG 335 (702)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSS
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhcc
Confidence 999998875310 01357889999999999999999999999999999999999
Q ss_pred CCCCCCCEEEE----cc---CCCChhHHHHHHhhhhcCC--CCccEEEEeecchH
Q 009641 399 MDVEGVNNVVN----YD---KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEV 444 (530)
Q Consensus 399 iDip~~~~VI~----~~---~p~s~~~y~Qr~GR~gR~g--~~g~~i~~~~~~~~ 444 (530)
||+|++++||+ || .|.+..+|+||+||+||.| ..|.|++++++.+.
T Consensus 336 idip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 336 VNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp SCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred CCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999 66 7889999999999999988 46899999998874
No 22
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.3e-44 Score=399.26 Aligned_cols=362 Identities=17% Similarity=0.248 Sum_probs=261.5
Q ss_pred HCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.+|| +|+|+|.+|++.++. |+|++++||||||||++++++++..+. .+.++||++||++|+.|+++.++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHHHHHHh
Confidence 4899 799999999988764 899999999999999988888877763 4558999999999999999999998
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC-CcEEEeCChHHHHHHhcCCCCCCCCccEEEE
Q 009641 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
+ ..++++..++|+.+..+... .+..+..+ ++|+|+||++|.+++.. +.+.++++|||
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~------------------~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lVi 202 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEK------------------FEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFV 202 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHH------------------HHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEE
T ss_pred h-CCCCeEEEEeCCCCHHHHHH------------------HHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEE
Confidence 7 67899999999988633211 12233344 89999999999888764 55678999999
Q ss_pred echhHhhh-----------HhhhhH-HHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 009641 204 DETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (530)
Q Consensus 204 DEah~~~~-----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (530)
||||++.. .+|... +..++..++.... .. .....+..++++
T Consensus 203 DEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~--~~-------------------------~~~~~~~~q~ll 255 (1104)
T 4ddu_A 203 DDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI--YE-------------------------RPKNLKPGILVV 255 (1104)
T ss_dssp SCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSC--CC-------------------------CCSSCCCCEEEE
T ss_pred eCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchh--hh-------------------------hhccCCCceEEE
Confidence 99987654 455555 6777776541100 00 000003348999
Q ss_pred EeEe-ecCChhh-hhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHH
Q 009641 272 LSAT-LTQDPNK-LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (530)
Q Consensus 272 ~SaT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~ 349 (530)
+||| .+..+.. +....+. +...... .....+.+.+..+ .+...+..++... ++++||||++++.++.++
T Consensus 256 ~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~ 326 (1104)
T 4ddu_A 256 SSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELY 326 (1104)
T ss_dssp ECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHH
T ss_pred EcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHH
Confidence 9999 4444432 2221111 1111111 1233344444433 5777778888774 489999999999999999
Q ss_pred HHHHhcCCCcceEE-EccccCCHHHHHHHHHHHhcCCccEEEE----ecccccCCCCCC-CCEEEEccCCC---------
Q 009641 350 TLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA--------- 414 (530)
Q Consensus 350 ~~L~~~~~~~~~v~-~~h~~~~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiDip~-~~~VI~~~~p~--------- 414 (530)
..|...+ +.+. .+||. |.+ ++.|++|+.+|||| |+++++|||+|+ +++||+||+|.
T Consensus 327 ~~L~~~g---~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~ 397 (1104)
T 4ddu_A 327 EYLKRFK---FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDK 397 (1104)
T ss_dssp HHHHHTT---CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSS
T ss_pred HHHHhCC---CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCccccc
Confidence 9999876 7887 89983 556 99999999999999 999999999999 99999999998
Q ss_pred ---------------------------------------------------------------ChhHHHHHHhhhhcCCC
Q 009641 415 ---------------------------------------------------------------YIKTYIHRAGRTARAGQ 431 (530)
Q Consensus 415 ---------------------------------------------------------------s~~~y~Qr~GR~gR~g~ 431 (530)
++.+|+||+||+||.|.
T Consensus 398 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~ 477 (1104)
T 4ddu_A 398 APRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILN 477 (1104)
T ss_dssp CCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEET
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccC
Confidence 77899999999999654
Q ss_pred C--ccEEEEeecchHHHHHHHHHHhcC-CCCCCcCCChhHHhhhHHHHHHHHhc
Q 009641 432 L--GRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIESLRPVYKSVRGG 482 (530)
Q Consensus 432 ~--g~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (530)
. +.+++++..+|...+..+.+.+.. ...+..++.+..++.+...+.+.++.
T Consensus 478 gg~~~Glsi~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~ 531 (1104)
T 4ddu_A 478 GVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRR 531 (1104)
T ss_dssp TEECCEEEEEECCCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHHHHHHHHH
T ss_pred CCcccceEEEEEecHHHHHHHHHHHhhhcccccccccccCHHHHHHHHhHHHHH
Confidence 3 244544445666777776666531 23344455555555555555555544
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.5e-44 Score=379.80 Aligned_cols=340 Identities=19% Similarity=0.204 Sum_probs=199.0
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC-CcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~-~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
++..+|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+..... .+.++||++||++|+.|+.+.++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3455899999999998864 7899999999999999999999998876432 1568999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEe
Q 009641 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (530)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViD 204 (530)
+...++++..++|+......... +..+++|+|+||++|.+++.......+.++++||+|
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEK---------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 137 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHH---------------------HHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEE
T ss_pred hcccCceEEEEeCCCCcchhHHH---------------------hhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEE
Confidence 98889999999998864443222 224569999999999999987433378899999999
Q ss_pred chhHhhhHhhhhHH-HHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChh-h
Q 009641 205 ETDRLLREAYQAWL-PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-K 282 (530)
Q Consensus 205 Eah~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~-~ 282 (530)
|||++.+.+....+ ..++...... ..+..+++++|||+..... .
T Consensus 138 Eah~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~l~lSAT~~~~~~~~ 183 (556)
T 4a2p_A 138 ECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAKN 183 (556)
T ss_dssp TGGGCSTTSHHHHHHHHHHHHHHCC-------------------------------------CCEEEEEESCCCCTTCSS
T ss_pred CCcccCCcchHHHHHHHHHHhhhcc----------------------------------cCCCCeEEEEeCCcccCchhh
Confidence 99999776543222 2222111000 0123478999999954210 0
Q ss_pred ----------hhhh------------------ccCCceEEe--cCCccccC-c-------ccc----ee-----------
Q 009641 283 ----------LAQL------------------DLHHPLFLT--TGETRYKL-P-------ERL----ES----------- 309 (530)
Q Consensus 283 ----------~~~~------------------~~~~~~~~~--~~~~~~~~-~-------~~~----~~----------- 309 (530)
+... +...+.... ........ . ..+ ..
T Consensus 184 ~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (556)
T 4a2p_A 184 IEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNS 263 (556)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 0000 001111100 00000000 0 000 00
Q ss_pred -----------e--------------------------------------------------------------------
Q 009641 310 -----------Y-------------------------------------------------------------------- 310 (530)
Q Consensus 310 -----------~-------------------------------------------------------------------- 310 (530)
+
T Consensus 264 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 343 (556)
T 4a2p_A 264 KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT 343 (556)
T ss_dssp -CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred ccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 0
Q ss_pred ---------------------EeeccCCCcHHHHHHHHHh----cCCCcEEEEcCChHHHHHHHHHHHhcCC--------
Q 009641 311 ---------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE-------- 357 (530)
Q Consensus 311 ---------------------~~~~~~~~k~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~L~~~~~-------- 357 (530)
........|...|..++.. ..+.++||||+++.+++.+++.|...+.
T Consensus 344 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~ 423 (556)
T 4a2p_A 344 ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGV 423 (556)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC
T ss_pred HHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeE
Confidence 0000124466666666653 4678999999999999999999986511
Q ss_pred -CcceEEEccccCCHHHHHHHHHHHhc-CCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccE
Q 009641 358 -LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (530)
Q Consensus 358 -~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~ 435 (530)
.+.....+||+|++.+|.++++.|++ |+.+|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. ++|.+
T Consensus 424 ~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~ 501 (556)
T 4a2p_A 424 LMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKC 501 (556)
T ss_dssp ------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCE
T ss_pred EEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceE
Confidence 12455567888999999999999999 999999999999999999999999999999999999999999 999 78999
Q ss_pred EEEeecchHHH
Q 009641 436 FTLLHKDEVKR 446 (530)
Q Consensus 436 i~~~~~~~~~~ 446 (530)
++|+++.+...
T Consensus 502 ~~l~~~~~~~~ 512 (556)
T 4a2p_A 502 ILVTSKTEVVE 512 (556)
T ss_dssp EEEESCHHHHH
T ss_pred EEEEeCcchHH
Confidence 99999886543
No 24
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.7e-44 Score=374.81 Aligned_cols=357 Identities=18% Similarity=0.197 Sum_probs=254.9
Q ss_pred HCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.+|| .|+|+|..+++.++. |+ |+.|+||+|||++|.+|++..... +..++||+||++||.|.++++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~----G~--Iaea~TGeGKTlaf~LP~~l~aL~----g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHD----GN--IAEMKTGEGKTLTSTLPVYLNALT----GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TS--EEECCTTSCHHHHHHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhC----CC--EEEccCCcHHHHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 5899 999999999988764 66 999999999999999999854433 447999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcC-----CCCCCCCc
Q 009641 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHL 198 (530)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~-----~~~~~~~~ 198 (530)
..++|+++++++|+.+...+.. ..+++|+|+||++| ++++... ....++.+
T Consensus 148 ~~~lgl~v~~i~gg~~~~~r~~-----------------------~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~ 204 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDEKRE-----------------------AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPL 204 (844)
T ss_dssp HHHTTCCEEECCTTSCHHHHHH-----------------------HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHHHH-----------------------hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCC
Confidence 9999999999999987544321 23579999999999 6665542 13557889
Q ss_pred cEEEEechhHhh-hHh---------------hhhHHHHHHhhcccC-------cccccc--cc----------ccccccc
Q 009641 199 CYLVVDETDRLL-REA---------------YQAWLPTVLQLTRSD-------NENRFS--DA----------STFLPSA 243 (530)
Q Consensus 199 ~~lViDEah~~~-~~~---------------~~~~~~~i~~~~~~~-------~~~~~~--~~----------~~~~~~~ 243 (530)
.++|+||||+|+ +.+ +...+..++..++.. ...... +. ...+.++
T Consensus 205 ~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsa 284 (844)
T 1tf5_A 205 HFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDV 284 (844)
T ss_dssp CEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSG
T ss_pred CEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCC
Confidence 999999999998 553 567778888777531 000000 00 0001111
Q ss_pred cc-----chh----h---hhc-----------------ccc---ccCCC------------CCCCCc-------------
Q 009641 244 FG-----SLK----T---IRR-----------------CGV---ERGFK------------DKPYPR------------- 266 (530)
Q Consensus 244 ~~-----~~~----~---~~~-----------------~~~---~~~~~------------~~~~~~------------- 266 (530)
.. .+. . +.+ ++. .+.+. -...+.
T Consensus 285 t~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~f 364 (844)
T 1tf5_A 285 KHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYF 364 (844)
T ss_dssp GGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHH
Confidence 00 000 0 000 000 00000 000000
Q ss_pred ---eeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh--cCCCcEEEEcCC
Q 009641 267 ---LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (530)
Q Consensus 267 ---~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVf~~s 341 (530)
.+...+|+|.......+...+..+.+.+.+.. +....-....+......|...+...+.. ..+.++||||+|
T Consensus 365 r~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~---p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s 441 (844)
T 1tf5_A 365 RMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNR---PVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441 (844)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSS---CCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHhhhccCCcccchhHHHHHHHhCCceEEecCCC---CcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 13456788887766666665544443332221 1111111223344566788888877754 356789999999
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCC--------CCCEEEEccCC
Q 009641 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKP 413 (530)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip--------~~~~VI~~~~p 413 (530)
++.++.++..|...+ +++..+||++.+.+|..+.+.|+.| .|+|||++++||+||+ ++.+||+|+.|
T Consensus 442 ~~~se~Ls~~L~~~g---i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 442 VETSELISKLLKNKG---IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp HHHHHHHHHHHHTTT---CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred HHHHHHHHHHHHHCC---CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC
Confidence 999999999999876 8899999999888887666666665 6999999999999999 78899999999
Q ss_pred CChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 414 ~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
.|.+.|+||+||+||.|.+|.+++|++.+|
T Consensus 517 ~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 517 ESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999999999999999999876
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-45 Score=401.06 Aligned_cols=335 Identities=19% Similarity=0.196 Sum_probs=249.1
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
+++.+...+...++-.|+|+|.+|++.+. .+++++++||||||||++|.+|++..+.. +.++||++||++|+
T Consensus 169 l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~----g~rvlvl~PtraLa 240 (1108)
T 3l9o_A 169 IAEHKRVNEARTYPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALS 240 (1108)
T ss_dssp TTTTCCCSCSSCCSSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT----TCEEEEEESSHHHH
T ss_pred CChhhhHHHHHhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEcCcHHHH
Confidence 44444444445555589999999998864 48999999999999999999999988854 44899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCC
Q 009641 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
.|+++.+.+++. .++.++|+... ...++|+|+||++|.+++.+ ....
T Consensus 241 ~Q~~~~l~~~~~----~VglltGd~~~----------------------------~~~~~IlV~Tpe~L~~~L~~-~~~~ 287 (1108)
T 3l9o_A 241 NQKYRELLAEFG----DVGLMTGDITI----------------------------NPDAGCLVMTTEILRSMLYR-GSEV 287 (1108)
T ss_dssp HHHHHHHHHHTS----SEEEECSSCBC----------------------------CCSCSEEEEEHHHHHHHHHH-CSSH
T ss_pred HHHHHHHHHHhC----CccEEeCcccc----------------------------CCCCCEEEeChHHHHHHHHc-Cccc
Confidence 999999999864 57778887752 24469999999999999887 3455
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
+.++++|||||||++.+.+++..+..++..++. ..+++++||
T Consensus 288 l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~--------------------------------------~~qvl~lSA 329 (1108)
T 3l9o_A 288 MREVAWVIFDEVHYMRDKERGVVWEETIILLPD--------------------------------------KVRYVFLSA 329 (1108)
T ss_dssp HHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCT--------------------------------------TSEEEEEEC
T ss_pred cccCCEEEEhhhhhccccchHHHHHHHHHhcCC--------------------------------------CceEEEEcC
Confidence 778999999999999999999999988877642 238999999
Q ss_pred eecCChh--hhhhhccCCceEEec-CCccccCcccceeeEee---------ccC--------------------------
Q 009641 275 TLTQDPN--KLAQLDLHHPLFLTT-GETRYKLPERLESYKLI---------CES-------------------------- 316 (530)
Q Consensus 275 T~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~-------------------------- 316 (530)
|+++... .+.......+..+.. .....+ +.++... .+.
T Consensus 330 Tipn~~e~a~~l~~~~~~~~~vi~~~~rp~p----l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (1108)
T 3l9o_A 330 TIPNAMEFAEWICKIHSQPCHIVYTNFRPTP----LQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 405 (1108)
T ss_dssp SCSSCHHHHHHHHHHTCSCEEEEEECCCSSC----EEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------
T ss_pred CCCCHHHHHHHHHhhcCCCeEEEecCCCccc----ceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccc
Confidence 9876533 333333333333322 111111 1111110 000
Q ss_pred --------------------CCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCC-------------------
Q 009641 317 --------------------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE------------------- 357 (530)
Q Consensus 317 --------------------~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~------------------- 357 (530)
..+...+...+......++||||+++..|+.++..|...+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~ 485 (1108)
T 3l9o_A 406 TDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIAL 485 (1108)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTH
T ss_pred cccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 11122234444455677999999999999999998864320
Q ss_pred -----------------CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCC-------
Q 009641 358 -----------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------- 413 (530)
Q Consensus 358 -----------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p------- 413 (530)
...++..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+++.|
T Consensus 486 l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r 565 (1108)
T 3l9o_A 486 LPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFR 565 (1108)
T ss_dssp HHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEE
T ss_pred cchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccc
Confidence 01127899999999999999999999999999999999999999999999977653
Q ss_pred -CChhHHHHHHhhhhcCC--CCccEEEEeecc-hHHHHHHHHH
Q 009641 414 -AYIKTYIHRAGRTARAG--QLGRCFTLLHKD-EVKRFKKLLQ 452 (530)
Q Consensus 414 -~s~~~y~Qr~GR~gR~g--~~g~~i~~~~~~-~~~~~~~~~~ 452 (530)
.|+.+|+||+||+||.| ..|.+++++.+. +...+..++.
T Consensus 566 ~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 566 WVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp ECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred cCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 36778999999999999 568888888776 3444555544
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.3e-45 Score=394.39 Aligned_cols=349 Identities=17% Similarity=0.160 Sum_probs=214.8
Q ss_pred HHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC-CcccEEEEcCcHHHHHHH
Q 009641 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQV 117 (530)
Q Consensus 39 i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~-~~~~~lil~Pt~~L~~Q~ 117 (530)
+..++..+||.+|+|+|.++++.++. ++|+++.+|||+|||++|++|+++.+..... .+.++||++||++|+.|+
T Consensus 2 ~~~~l~~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 2 EVSDTNLYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp -----CTTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHH
T ss_pred CCCcccccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHH
Confidence 34577889999999999999988764 8999999999999999999999988876431 235899999999999999
Q ss_pred HHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCC
Q 009641 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 197 (530)
Q Consensus 118 ~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~ 197 (530)
.+.+++++...++++..++|+........ .+..+++|+|+||++|.+.+.......+.+
T Consensus 78 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~ 136 (696)
T 2ykg_A 78 KSVFSKYFERHGYRVTGISGATAENVPVE---------------------QIVENNDIIILTPQILVNNLKKGTIPSLSI 136 (696)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCSSSCHH---------------------HHHHTCSEEEECHHHHHHHHHTTSSCCGGG
T ss_pred HHHHHHHhccCCceEEEEeCCccccccHH---------------------HhccCCCEEEECHHHHHHHHhcCccccccc
Confidence 99999999888899999999875433221 222457999999999999998733226888
Q ss_pred ccEEEEechhHhhhHhh-hhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEee
Q 009641 198 LCYLVVDETDRLLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (530)
Q Consensus 198 ~~~lViDEah~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 276 (530)
+++|||||||++..... ...+...+...-. ....+..+++++|||+
T Consensus 137 ~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~---------------------------------~~~~~~~~il~LTATp 183 (696)
T 2ykg_A 137 FTLMIFDECHNTSKQHPYNMIMFNYLDQKLG---------------------------------GSSGPLPQVIGLTASV 183 (696)
T ss_dssp CSEEEEETGGGCSTTCHHHHHHHHHHHHHHT---------------------------------TCCSCCCEEEEEESCC
T ss_pred ccEEEEeCCCcccCcccHHHHHHHHHHHhhc---------------------------------ccCCCCCeEEEEeCcc
Confidence 99999999999864432 1222212211000 0011233788999998
Q ss_pred cCC--------hhhhhhh---------------------ccCCceEEe--cCCcccc-----C-----------------
Q 009641 277 TQD--------PNKLAQL---------------------DLHHPLFLT--TGETRYK-----L----------------- 303 (530)
Q Consensus 277 ~~~--------~~~~~~~---------------------~~~~~~~~~--~~~~~~~-----~----------------- 303 (530)
... ...+... +...|.... ....... .
T Consensus 184 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~ 263 (696)
T 2ykg_A 184 GVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKD 263 (696)
T ss_dssp CCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 621 1111100 000111000 0000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 009641 304 -------------------------------------------------------------------------------- 303 (530)
Q Consensus 304 -------------------------------------------------------------------------------- 303 (530)
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~ 343 (696)
T 2ykg_A 264 LENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFS 343 (696)
T ss_dssp GGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHH
Confidence
Q ss_pred ------cccceeeEe---------------e-ccCCCcHHHHHHHHHhc----CCCcEEEEcCChHHHHHHHHHHHhcCC
Q 009641 304 ------PERLESYKL---------------I-CESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE 357 (530)
Q Consensus 304 ------~~~~~~~~~---------------~-~~~~~k~~~l~~~l~~~----~~~~~iVf~~s~~~~~~l~~~L~~~~~ 357 (530)
...+.+... . .....|...+..++... .++++||||+++..++.+++.|...+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~ 423 (696)
T 2ykg_A 344 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 423 (696)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTT
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCC
Confidence 000000000 0 01345677777777654 678999999999999999999987642
Q ss_pred -CcceEEEc--------cccCCHHHHHHHHHHHhc-CCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhh
Q 009641 358 -LRIKIKEY--------SGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (530)
Q Consensus 358 -~~~~v~~~--------h~~~~~~~R~~~~~~f~~-g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~g 427 (530)
..+.+..+ ||+|++.+|.+++++|++ |+.+|||||+++++|||+|++++||+||+|.++.+|+||+|| |
T Consensus 424 ~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-G 502 (696)
T 2ykg_A 424 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 502 (696)
T ss_dssp CCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC--------
T ss_pred ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-C
Confidence 11466666 669999999999999998 999999999999999999999999999999999999999999 9
Q ss_pred cCCCCccEEEEeecchHHHH
Q 009641 428 RAGQLGRCFTLLHKDEVKRF 447 (530)
Q Consensus 428 R~g~~g~~i~~~~~~~~~~~ 447 (530)
|. +.|.+++++++.+....
T Consensus 503 R~-~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 503 RA-RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ---CCCEEEEEESCHHHHHH
T ss_pred cC-CCceEEEEecCCCHHHH
Confidence 98 78999999998876443
No 27
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.8e-45 Score=402.50 Aligned_cols=364 Identities=20% Similarity=0.286 Sum_probs=266.8
Q ss_pred HHHH-HCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH
Q 009641 41 VALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (530)
Q Consensus 41 ~~l~-~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (530)
+.+. .+||. | ++|.++++.++. |+|+++.||||||||+ |.+|++..+.. .+.++||++||++|+.|+++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILR----KESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHT----TCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHh----CCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHHH
Confidence 4444 48998 9 999999998874 8999999999999998 88998888765 45689999999999999999
Q ss_pred HHHHhccccCc----eEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCC
Q 009641 120 VFAAIAPAVGL----SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195 (530)
Q Consensus 120 ~l~~~~~~~~~----~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~ 195 (530)
.+++++...++ ++..++|+.+...+... ...+.. ++|+|+||++|.+++.+ +
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~------------------~~~l~~-~~IlV~TP~~L~~~l~~-----L 173 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENF------------------MQNLRN-FKIVITTTQFLSKHYRE-----L 173 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHH------------------HHSGGG-CSEEEEEHHHHHHCSTT-----S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHH------------------HhhccC-CCEEEEcHHHHHHHHHH-----h
Confidence 99999988888 89999999887664221 223334 79999999999987765 5
Q ss_pred CCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEe
Q 009641 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (530)
Q Consensus 196 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 275 (530)
+++++||+||||++++ ++..+..++..+....... . .......+.+++|||
T Consensus 174 ~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~--------~-------------------~~~~~~~q~~l~SAT 224 (1054)
T 1gku_B 174 GHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLK--------T-------------------KSWVGEARGCLMVST 224 (1054)
T ss_dssp CCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETT--------T-------------------TEEEECCSSEEEECC
T ss_pred ccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhh--------h-------------------hhcccCCceEEEEec
Confidence 6899999999999987 5667777776553211000 0 000123378999999
Q ss_pred ecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhc
Q 009641 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355 (530)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~ 355 (530)
++.. ..+......++..+........ ...+.+... ...+...+..+++.. ++++||||++++.|+.+++.|...
T Consensus 225 ~t~~-~~~~~~~~~~~~~i~v~~~~~~-~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 225 ATAK-KGKKAELFRQLLNFDIGSSRIT-VRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp CCSC-CCTTHHHHHHHHCCCCSCCEEC-CCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS
T ss_pred CCCc-hhHHHHHhhcceEEEccCcccC-cCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc
Confidence 9887 5444433333333332222211 222333333 355666777777765 578999999999999999999864
Q ss_pred CCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEE----ecccccCCCCCCC-CEEEEccCC-----------------
Q 009641 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEGV-NNVVNYDKP----------------- 413 (530)
Q Consensus 356 ~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiDip~~-~~VI~~~~p----------------- 413 (530)
+.+..+||++. .+++.|++|+.+|||| |+++++|||+|+| ++||++|+|
T Consensus 299 ----~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~ 369 (1054)
T 1gku_B 299 ----FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMV 369 (1054)
T ss_dssp ----SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHH
T ss_pred ----cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHH
Confidence 78999999983 7889999999999999 8999999999995 999999999
Q ss_pred ------------------------------------------------------CChhHHHHHHhhhhcCCCCc--cEEE
Q 009641 414 ------------------------------------------------------AYIKTYIHRAGRTARAGQLG--RCFT 437 (530)
Q Consensus 414 ------------------------------------------------------~s~~~y~Qr~GR~gR~g~~g--~~i~ 437 (530)
.+..+|+||+||+||.|..| .+++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~ 449 (1054)
T 1gku_B 370 KLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGAS 449 (1054)
T ss_dssp HHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEE
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEE
Confidence 78999999999999987775 5888
Q ss_pred EeecchHHHHHHHHHHhcCCCCCCcCCChhHHhhhHHHHHHHHhc
Q 009641 438 LLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRGG 482 (530)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (530)
|+..+|...+..+.+.+.....+...+++...+.+...+...++.
T Consensus 450 ~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~i~~~r~~ 494 (1054)
T 1gku_B 450 FLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDESRDR 494 (1054)
T ss_dssp EEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHhhccchHh
Confidence 888888888887777765422333444444444444444444443
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.9e-44 Score=378.95 Aligned_cols=338 Identities=18% Similarity=0.200 Sum_probs=224.1
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC-CCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~-~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
+|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+.... ..+.++||++||++|+.|+.+.+++++...
T Consensus 4 ~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 799999999998764 789999999999999999999999887642 125689999999999999999999999888
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
++++..++|+........ .+..+++|+|+||++|..++.......+.++++||+||||+
T Consensus 80 ~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 138 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQ---------------------HIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN 138 (555)
T ss_dssp TCCEEEECTTTGGGSCHH---------------------HHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG
T ss_pred CcEEEEEcCCCcchhhHH---------------------HHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc
Confidence 999999999986443322 22245799999999999999874333688899999999999
Q ss_pred hhhHh-hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCCh-------
Q 009641 209 LLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP------- 280 (530)
Q Consensus 209 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~------- 280 (530)
+.+.+ +...+..++..... ....+..+.+++|||+....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~lSAT~~~~~~~~~~~~ 185 (555)
T 3tbk_A 139 TSKNHPYNQIMFRYLDHKLG---------------------------------ESRDPLPQVVGLTASVGVGDAKTAEEA 185 (555)
T ss_dssp CSTTCHHHHHHHHHHHHHTS---------------------------------SCCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred cCCcchHHHHHHHHHHhhhc---------------------------------cccCCCCeEEEEecCcccCccccHHHH
Confidence 97763 22222222222110 01113347999999996532
Q ss_pred -hhhhh--hccCCceEEecCCccc----cCcccceee-------------------------------------------
Q 009641 281 -NKLAQ--LDLHHPLFLTTGETRY----KLPERLESY------------------------------------------- 310 (530)
Q Consensus 281 -~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~------------------------------------------- 310 (530)
..+.. ..+....+........ ........+
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 265 (555)
T 3tbk_A 186 MQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNRE 265 (555)
T ss_dssp HHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCC
T ss_pred HHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 11000 0011011100000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009641 311 -------------------------------------------------------------------------------- 310 (530)
Q Consensus 311 -------------------------------------------------------------------------------- 310 (530)
T Consensus 266 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (555)
T 3tbk_A 266 FGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETE 345 (555)
T ss_dssp SSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HH
T ss_pred ccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHH
Confidence
Q ss_pred ------------------EeeccCCCcHHHHHHHHHh----cCCCcEEEEcCChHHHHHHHHHHHhcCC---------Cc
Q 009641 311 ------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LR 359 (530)
Q Consensus 311 ------------------~~~~~~~~k~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~L~~~~~---------~~ 359 (530)
........|...+..++.. ....++||||+++.+++.+++.|...+. .+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g 425 (555)
T 3tbk_A 346 RELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTG 425 (555)
T ss_dssp HHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC
T ss_pred HHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEe
Confidence 0000124456666666654 3568999999999999999999987531 12
Q ss_pred ceEEEccccCCHHHHHHHHHHHhc-CCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEE
Q 009641 360 IKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (530)
Q Consensus 360 ~~v~~~h~~~~~~~R~~~~~~f~~-g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~ 438 (530)
.....+||+|++.+|.++++.|++ |+.+|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. +.|.+++|
T Consensus 426 ~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l 503 (555)
T 3tbk_A 426 RGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLL 503 (555)
T ss_dssp --------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEE
T ss_pred cCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEE
Confidence 344556779999999999999999 999999999999999999999999999999999999999999 998 88999999
Q ss_pred eecchHHHH
Q 009641 439 LHKDEVKRF 447 (530)
Q Consensus 439 ~~~~~~~~~ 447 (530)
+++.+....
T Consensus 504 ~~~~~~~~~ 512 (555)
T 3tbk_A 504 TSSADVIEK 512 (555)
T ss_dssp ESCHHHHHH
T ss_pred EcCCCHHHH
Confidence 998876544
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.1e-43 Score=383.59 Aligned_cols=340 Identities=18% Similarity=0.186 Sum_probs=205.5
Q ss_pred HCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC-CcccEEEEcCcHHHHHHHHHHHHH
Q 009641 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~-~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
-+|+.+|+|+|.++++.++. ++++++.+|||+|||++|++|++..+..... .+.++|||+||++|+.|+.+.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 46899999999999988764 7899999999999999999999998876421 256899999999999999999999
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEE
Q 009641 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
+++..++++..++|+........ .+..+++|+|+||++|.+.+.+.....+.++++|||
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHH---------------------HHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred hcccCCceEEEEeCCcchhhhHH---------------------HhhCCCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 99888999999999986444322 223467999999999999998733337889999999
Q ss_pred echhHhhhHhhh-hHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCCh--
Q 009641 204 DETDRLLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-- 280 (530)
Q Consensus 204 DEah~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-- 280 (530)
||||++...+.. ..+..++..... ...+..+++++|||+....
T Consensus 378 DEaH~~~~~~~~~~i~~~~~~~~~~----------------------------------~~~~~~~~l~lSATp~~~~~~ 423 (797)
T 4a2q_A 378 DECHNTTGNHPYNVLMTRYLEQKFN----------------------------------SASQLPQILGLTASVGVGNAK 423 (797)
T ss_dssp TTGGGCSTTSHHHHHHHHHHHHHHT----------------------------------TCCCCCEEEEEESCCCCTTCC
T ss_pred ECccccCCCccHHHHHHHHHHHhhc----------------------------------cCCCCCeEEEEcCCccccccc
Confidence 999998765332 222222221100 0113347899999995321
Q ss_pred ------hhhhh---------------------hccCCce--EEecCCcc-cc---------------------------C
Q 009641 281 ------NKLAQ---------------------LDLHHPL--FLTTGETR-YK---------------------------L 303 (530)
Q Consensus 281 ------~~~~~---------------------~~~~~~~--~~~~~~~~-~~---------------------------~ 303 (530)
..+.. .+...+. ........ .. .
T Consensus 424 ~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~ 503 (797)
T 4a2q_A 424 NIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQN 503 (797)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC---------
T ss_pred cHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Confidence 10000 0001111 00000000 00 0
Q ss_pred c---ccc-------e------------------------------------------------------ee---------
Q 009641 304 P---ERL-------E------------------------------------------------------SY--------- 310 (530)
Q Consensus 304 ~---~~~-------~------------------------------------------------------~~--------- 310 (530)
+ ... . .+
T Consensus 504 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 583 (797)
T 4a2q_A 504 SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPY 583 (797)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCc
Confidence 0 000 0 00
Q ss_pred ----------------------EeeccCCCcHHHHHHHHHh----cCCCcEEEEcCChHHHHHHHHHHHhcCC-------
Q 009641 311 ----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------- 357 (530)
Q Consensus 311 ----------------------~~~~~~~~k~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~L~~~~~------- 357 (530)
........|...|..++.. ..+.++||||+++..++.+++.|...+.
T Consensus 584 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~ 663 (797)
T 4a2q_A 584 TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG 663 (797)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccce
Confidence 0000024456666666654 4678999999999999999999986421
Q ss_pred --CcceEEEccccCCHHHHHHHHHHHhc-CCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCcc
Q 009641 358 --LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (530)
Q Consensus 358 --~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~ 434 (530)
.+.....+||+|++.+|.++++.|++ |+.+|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. +.|.
T Consensus 664 ~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~ 741 (797)
T 4a2q_A 664 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSK 741 (797)
T ss_dssp EC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCC
T ss_pred EEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCce
Confidence 23456677999999999999999999 999999999999999999999999999999999999999999 999 8999
Q ss_pred EEEEeecchHH
Q 009641 435 CFTLLHKDEVK 445 (530)
Q Consensus 435 ~i~~~~~~~~~ 445 (530)
+++|+++.+..
T Consensus 742 ~i~l~~~~~~e 752 (797)
T 4a2q_A 742 CILVTSKTEVV 752 (797)
T ss_dssp EEEEECCHHHH
T ss_pred EEEEEeCCcHH
Confidence 99999987654
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-43 Score=383.37 Aligned_cols=327 Identities=19% Similarity=0.219 Sum_probs=249.2
Q ss_pred HHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHH
Q 009641 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (530)
Q Consensus 43 l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~ 122 (530)
...++| +|+|+|.+|++.+.. +++++++||||||||++|.++++..+.. +.++||++||++|+.|+++.+.
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~----g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc----CCeEEEECChHHHHHHHHHHHH
Confidence 456788 599999999988754 8899999999999999999998887754 4589999999999999999999
Q ss_pred HhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEE
Q 009641 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (530)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lV 202 (530)
+++. .++.++|+.... ..++|+|+||++|.+++.+ ....+.++++||
T Consensus 151 ~~~~----~vglltGd~~~~----------------------------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVV 197 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITIN----------------------------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVI 197 (1010)
T ss_dssp HHHS----CEEEECSSCEEC----------------------------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred HHhC----CEEEEeCCCccC----------------------------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEE
Confidence 8764 678888887532 3459999999999998876 445678999999
Q ss_pred EechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChh-
Q 009641 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN- 281 (530)
Q Consensus 203 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~- 281 (530)
|||||++.+.+++..++.++..++. ..+++++|||+++...
T Consensus 198 iDEaH~l~d~~rg~~~e~il~~l~~--------------------------------------~~~il~LSATi~n~~e~ 239 (1010)
T 2xgj_A 198 FDEVHYMRDKERGVVWEETIILLPD--------------------------------------KVRYVFLSATIPNAMEF 239 (1010)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHSCT--------------------------------------TCEEEEEECCCTTHHHH
T ss_pred EechhhhcccchhHHHHHHHHhcCC--------------------------------------CCeEEEEcCCCCCHHHH
Confidence 9999999988888888888776542 2389999999875432
Q ss_pred -hhhhhccCCceEEecCCccccCcccceeeEee---------ccC-----------------------------------
Q 009641 282 -KLAQLDLHHPLFLTTGETRYKLPERLESYKLI---------CES----------------------------------- 316 (530)
Q Consensus 282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----------------------------------- 316 (530)
.+.......+..+...... +..+.++... .+.
T Consensus 240 a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 316 (1010)
T 2xgj_A 240 AEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQ 316 (1010)
T ss_dssp HHHHHHHHTSCEEEEEECCC---SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------
T ss_pred HHHHHhhcCCCeEEEecCCC---cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccccc
Confidence 1221122223322211111 0011111110 000
Q ss_pred -----------CCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCC---------------------------
Q 009641 317 -----------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL--------------------------- 358 (530)
Q Consensus 317 -----------~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~--------------------------- 358 (530)
......+...+......++||||+++..|+.+++.|...+..
T Consensus 317 ~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~ 396 (1010)
T 2xgj_A 317 TYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELP 396 (1010)
T ss_dssp ------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCH
T ss_pred ccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcch
Confidence 112233444455556679999999999999999988753210
Q ss_pred ---------cceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEE----ccC----CCChhHHHH
Q 009641 359 ---------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK----PAYIKTYIH 421 (530)
Q Consensus 359 ---------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~----~~~----p~s~~~y~Q 421 (530)
..++..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+ ||. |.++.+|+|
T Consensus 397 ~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Q 476 (1010)
T 2xgj_A 397 QIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQ 476 (1010)
T ss_dssp HHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHH
T ss_pred hHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhH
Confidence 124889999999999999999999999999999999999999999999999 998 889999999
Q ss_pred HHhhhhcCCCC--ccEEEEeecc-hHHHHHHHHH
Q 009641 422 RAGRTARAGQL--GRCFTLLHKD-EVKRFKKLLQ 452 (530)
Q Consensus 422 r~GR~gR~g~~--g~~i~~~~~~-~~~~~~~~~~ 452 (530)
|+||+||.|.+ |.+++++++. +...+.+++.
T Consensus 477 r~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 477 MSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp HHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred hhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 99999999974 9999999876 5555555543
No 31
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-42 Score=394.32 Aligned_cols=355 Identities=19% Similarity=0.180 Sum_probs=263.1
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
.|.+...+.+...+|..++|+|.+|++.++. .++|++++||||||||+++.+|+++.+... ++.++||++|+++|
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliaelail~~l~~~--~~~kavyi~P~raL 984 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAEFAILRMLLQS--SEGRCVYITPMEAL 984 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHHHHHHHHHHHC--TTCCEEEECSCHHH
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHHHHHHHHHHhC--CCCEEEEEcChHHH
Confidence 4667777888888999999999999998875 568899999999999999999999999874 34589999999999
Q ss_pred HHHHHHHHHH-hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCC
Q 009641 114 ALQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (530)
Q Consensus 114 ~~Q~~~~l~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~ 192 (530)
+.|.++.+++ +.+..|++|+.++|+...+... ...++|+|+|||++..++++...
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~------------------------~~~~~IiV~TPEkld~llr~~~~ 1040 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL------------------------LGKGNIIISTPEKWDILSRRWKQ 1040 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH------------------------HHHCSEEEECHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchhh------------------------cCCCCEEEECHHHHHHHHhCccc
Confidence 9999999876 5566799999999987644331 13459999999999888776433
Q ss_pred C-CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 009641 193 F-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (530)
Q Consensus 193 ~-~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (530)
. .++++++||+||+|.+.+ .++..++.++..+..... ...+..|+++
T Consensus 1041 ~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~-------------------------------~~~~~~riI~ 1088 (1724)
T 4f92_B 1041 RKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISS-------------------------------QIERPIRIVA 1088 (1724)
T ss_dssp CHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHH-------------------------------TTSSCCEEEE
T ss_pred ccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHh-------------------------------hcCCCceEEE
Confidence 2 367899999999998865 467777777765532100 0113458999
Q ss_pred EeEeecCChhhhhhhcc-CCceEEecCCccccCcccceeeEeeccCCCc-------HHHHHHHH-HhcCCCcEEEEcCCh
Q 009641 272 LSATLTQDPNKLAQLDL-HHPLFLTTGETRYKLPERLESYKLICESKLK-------PLYLVALL-QSLGEEKCIVFTSSV 342 (530)
Q Consensus 272 ~SaT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-------~~~l~~~l-~~~~~~~~iVf~~s~ 342 (530)
+|||++ +...+..+.. .............+. .++.+......... ...+...+ +....+++||||+|+
T Consensus 1089 lSATl~-N~~dla~WL~~~~~~~~~~~~~~RPv--pL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR 1165 (1724)
T 4f92_B 1089 LSSSLS-NAKDVAHWLGCSATSTFNFHPNVRPV--PLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSR 1165 (1724)
T ss_dssp EESCBT-THHHHHHHHTCCSTTEEECCGGGCSS--CEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSH
T ss_pred EeCCCC-CHHHHHHHhCCCCCCeEEeCCCCCCC--CeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCH
Confidence 999997 4555555432 222222222221121 22222211111111 11222333 344678999999999
Q ss_pred HHHHHHHHHHHhcC-------------------------------CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEE
Q 009641 343 ESTHRLCTLLNHFG-------------------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (530)
Q Consensus 343 ~~~~~l~~~L~~~~-------------------------------~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVa 391 (530)
+.|+.++..|.... ....+++.+||+|++.+|..+++.|++|.++||||
T Consensus 1166 ~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLva 1245 (1724)
T 4f92_B 1166 KQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVA 1245 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEE
T ss_pred HHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 99999887764310 01246889999999999999999999999999999
Q ss_pred ecccccCCCCCCCCEEEE----cc------CCCChhHHHHHHhhhhcCCC--CccEEEEeecchHHHHHHHHH
Q 009641 392 SDAMTRGMDVEGVNNVVN----YD------KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVKRFKKLLQ 452 (530)
Q Consensus 392 T~~~~~GiDip~~~~VI~----~~------~p~s~~~y~Qr~GR~gR~g~--~g~~i~~~~~~~~~~~~~~~~ 452 (530)
|+++++|||+|..++||. || .|.++.+|+||+|||||.|. .|.+++++.+.+...+++++.
T Consensus 1246 T~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~ 1318 (1724)
T 4f92_B 1246 SRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY 1318 (1724)
T ss_dssp EGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT
T ss_pred ChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhC
Confidence 999999999999888883 22 35689999999999999987 499999999998888877654
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-42 Score=355.24 Aligned_cols=323 Identities=24% Similarity=0.283 Sum_probs=240.6
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
+|+|+|.+++..++. + ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.|+.+.+++++...+
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 799999999988765 4 99999999999999999998887763 345899999999999999999999875445
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
.++..++|+......... ...++|+|+||+++...+.. ..+.+.++++||+||||++
T Consensus 81 ~~v~~~~g~~~~~~~~~~----------------------~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKA----------------------WARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp GGEEEECSCSCHHHHHHH----------------------HHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGC
T ss_pred hheEEeeCCcchhhhhhh----------------------ccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCccc
Confidence 588999998875543221 13469999999999998876 4566788999999999998
Q ss_pred hhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhh---h
Q 009641 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ---L 286 (530)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~---~ 286 (530)
.+......+...+.... +..+.+++|||+..+...+.. .
T Consensus 138 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~l~lTaTp~~~~~~~~~l~~~ 179 (494)
T 1wp9_A 138 VGNYAYVFIAREYKRQA--------------------------------------KNPLVIGLTASPGSTPEKIMEVINN 179 (494)
T ss_dssp STTCHHHHHHHHHHHHC--------------------------------------SSCCEEEEESCSCSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhcC--------------------------------------CCCeEEEEecCCCCCcHHHHHHHHh
Confidence 75433333332222211 122689999999855333222 1
Q ss_pred ccCCceEEecCCccc---------------cCcccc--------------------------------------------
Q 009641 287 DLHHPLFLTTGETRY---------------KLPERL-------------------------------------------- 307 (530)
Q Consensus 287 ~~~~~~~~~~~~~~~---------------~~~~~~-------------------------------------------- 307 (530)
............... ..+...
T Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
T 1wp9_A 180 LGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIIN 259 (494)
T ss_dssp TTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHH
T ss_pred cChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHH
Confidence 111111100000000 000000
Q ss_pred --------------------------------------eee-----------------------------------Eeec
Q 009641 308 --------------------------------------ESY-----------------------------------KLIC 314 (530)
Q Consensus 308 --------------------------------------~~~-----------------------------------~~~~ 314 (530)
..+ ....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (494)
T 1wp9_A 260 EEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIG 339 (494)
T ss_dssp HHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 000 0000
Q ss_pred cCCCcHHHHHHHHHh----cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccc--------cCCHHHHHHHHHHHh
Q 009641 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFR 382 (530)
Q Consensus 315 ~~~~k~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~--------~~~~~~R~~~~~~f~ 382 (530)
....|...+..++.. ..+.++||||+++..++.+++.|...+ +.+..+|| +|+..+|.++++.|+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 416 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG---IKAKRFVGQASKENDRGLSQREQKLILDEFA 416 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT---CCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC---CCcEEEeccccccccccCCHHHHHHHHHHHh
Confidence 334466667777765 468899999999999999999999875 88999999 999999999999999
Q ss_pred cCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHH
Q 009641 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (530)
Q Consensus 383 ~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~ 445 (530)
+|+.+|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+ |.++.|+.+++.+
T Consensus 417 ~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 417 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred cCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999998 9999999998654
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1e-42 Score=381.65 Aligned_cols=341 Identities=18% Similarity=0.198 Sum_probs=205.1
Q ss_pred HHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC-CcccEEEEcCcHHHHHHHHHHHH
Q 009641 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFA 122 (530)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~-~~~~~lil~Pt~~L~~Q~~~~l~ 122 (530)
.-.|+.+|+|+|.++++.++. |+++++.+|||+|||++|++|++..+..... .+.++|||+||++|+.|+++.++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ------CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 345788999999999988864 8899999999999999999999988766421 15689999999999999999999
Q ss_pred HhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEE
Q 009641 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (530)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lV 202 (530)
++++..++++..++|+.....+.. .+..+++|+|+||++|.+++.+.....+.++++||
T Consensus 318 ~~~~~~~~~v~~~~G~~~~~~~~~---------------------~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liV 376 (936)
T 4a2w_A 318 HHFERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 376 (936)
T ss_dssp HHHHTTTCCEEEECCC-----CCH---------------------HHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEE
T ss_pred HHhcccCceEEEEECCcchhhHHH---------------------HhccCCCEEEecHHHHHHHHHcCccccccCCCEEE
Confidence 999888999999999885443321 12234699999999999999874333688899999
Q ss_pred EechhHhhhHhh-hhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCCh-
Q 009641 203 VDETDRLLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP- 280 (530)
Q Consensus 203 iDEah~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~- 280 (530)
+||||++...+. ...+..++..... ...+..+.+++|||+....
T Consensus 377 iDEaH~~~~~~~~~~i~~~~~~~~~~----------------------------------~~~~~~~~l~LSATp~~~~~ 422 (936)
T 4a2w_A 377 FDECHNTTGNHPYNVLMTRYLEQKFN----------------------------------SASQLPQILGLTASVGVGNA 422 (936)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHT----------------------------------TCSCCCEEEEEESCCCCTTC
T ss_pred EECccccCCCccHHHHHHHHHHHhhc----------------------------------cCCCcCeEEEecCCcccccc
Confidence 999999876532 2222222221100 0112347899999995321
Q ss_pred -------hhhhh---------------------hccCCceEEe--cCCccc-c---------------------------
Q 009641 281 -------NKLAQ---------------------LDLHHPLFLT--TGETRY-K--------------------------- 302 (530)
Q Consensus 281 -------~~~~~---------------------~~~~~~~~~~--~~~~~~-~--------------------------- 302 (530)
..+.. .+...|.... ...... .
T Consensus 423 ~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~ 502 (936)
T 4a2w_A 423 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQ 502 (936)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------
T ss_pred hhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 00000 0111111110 000000 0
Q ss_pred Cccc---c-------------------------------------------------------------eee--------
Q 009641 303 LPER---L-------------------------------------------------------------ESY-------- 310 (530)
Q Consensus 303 ~~~~---~-------------------------------------------------------------~~~-------- 310 (530)
.+.. . ..+
T Consensus 503 ~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~ 582 (936)
T 4a2w_A 503 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGP 582 (936)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc
Confidence 0000 0 000
Q ss_pred -----------------------EeeccCCCcHHHHHHHHHh----cCCCcEEEEcCChHHHHHHHHHHHhcCC------
Q 009641 311 -----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------ 357 (530)
Q Consensus 311 -----------------------~~~~~~~~k~~~l~~~l~~----~~~~~~iVf~~s~~~~~~l~~~L~~~~~------ 357 (530)
........|...|..++.. ..+.++||||+++.+++.+++.|.....
T Consensus 583 ~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~ 662 (936)
T 4a2w_A 583 YTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 662 (936)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccce
Confidence 0000124466666667764 3568999999999999999999987521
Q ss_pred ---CcceEEEccccCCHHHHHHHHHHHhc-CCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCc
Q 009641 358 ---LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (530)
Q Consensus 358 ---~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g 433 (530)
.+.....+||+|++.+|.+++++|++ |+.+|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. +.|
T Consensus 663 ~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g 740 (936)
T 4a2w_A 663 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGS 740 (936)
T ss_dssp EEC----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CC
T ss_pred eEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCC
Confidence 12455567899999999999999999 999999999999999999999999999999999999999999 998 789
Q ss_pred cEEEEeecchHH
Q 009641 434 RCFTLLHKDEVK 445 (530)
Q Consensus 434 ~~i~~~~~~~~~ 445 (530)
.++.+++..+..
T Consensus 741 ~vi~Li~~~t~e 752 (936)
T 4a2w_A 741 KCILVTSKTEVV 752 (936)
T ss_dssp CEEEEESCHHHH
T ss_pred EEEEEEeCCCHH
Confidence 999999887543
No 34
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.6e-43 Score=398.00 Aligned_cols=354 Identities=18% Similarity=0.242 Sum_probs=258.3
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC-------CCcccEEE
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALV 106 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~-------~~~~~~li 106 (530)
.|++....++ .||++|+++|.++++.++. .++|++++||||||||+++.++++..+.... .++.++||
T Consensus 65 ~Lp~~~~~~f--~g~~~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~ly 139 (1724)
T 4f92_B 65 KLPKYAQAGF--EGFKTLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY 139 (1724)
T ss_dssp TSCGGGSTTC--TTCSBCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEE
T ss_pred hcCHHHHHhc--CCCCCCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEE
Confidence 3555544333 2899999999999998875 5789999999999999999999999987532 24668999
Q ss_pred EcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHH
Q 009641 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (530)
Q Consensus 107 l~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~ 186 (530)
++|+++|+.|+++.+++.+...|++|..++|+....+. ....++|+|+|||++..+
T Consensus 140 iaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~------------------------~~~~~~IlVtTpEkld~l 195 (1724)
T 4f92_B 140 IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE------------------------EISATQIIVCTPEKWDII 195 (1724)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT------------------------TGGGCSEEEECHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc------------------------ccCCCCEEEECHHHHHHH
Confidence 99999999999999999888889999999998864322 113579999999998766
Q ss_pred HhcCCC-CCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCC
Q 009641 187 INATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (530)
Q Consensus 187 l~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (530)
+++... ..++.+++|||||+|.+.+ .++..++.++..+..... ...+
T Consensus 196 lr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~-------------------------------~~~~ 243 (1724)
T 4f92_B 196 TRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIE-------------------------------MTQE 243 (1724)
T ss_dssp TTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHH-------------------------------HHTC
T ss_pred HcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHH-------------------------------hCCC
Confidence 665322 1367899999999997754 677778777764321000 0012
Q ss_pred ceeeEEEeEeecCChhhhhhhccCCc----eEEecCCccccCcccceeeEeeccCCCc---HH----HHHHHHH-hcCCC
Q 009641 266 RLVKMVLSATLTQDPNKLAQLDLHHP----LFLTTGETRYKLPERLESYKLICESKLK---PL----YLVALLQ-SLGEE 333 (530)
Q Consensus 266 ~~~~i~~SaT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~----~l~~~l~-~~~~~ 333 (530)
.+|+|++|||++ +...++.+....+ ..+..... |..+.+.......... .. .+...+. ...++
T Consensus 244 ~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~~~~R----PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (1724)
T 4f92_B 244 DVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFDNSFR----PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKN 318 (1724)
T ss_dssp CCEEEEEECSCT-THHHHHHHTTCCHHHHEEECCGGGC----SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred CCcEEEEecccC-CHHHHHHHhCCCCCCCeEEECCCCc----cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCC
Confidence 348999999996 4555555433221 11111111 1122332222222211 11 1222222 23567
Q ss_pred cEEEEcCChHHHHHHHHHHHhcC----------------------------------CCcceEEEccccCCHHHHHHHHH
Q 009641 334 KCIVFTSSVESTHRLCTLLNHFG----------------------------------ELRIKIKEYSGLQRQSVRSKTLK 379 (530)
Q Consensus 334 ~~iVf~~s~~~~~~l~~~L~~~~----------------------------------~~~~~v~~~h~~~~~~~R~~~~~ 379 (530)
++||||+|++.|+.+++.|.+.. ....+++.+||+|++.+|..+++
T Consensus 319 ~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~ 398 (1724)
T 4f92_B 319 QVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVED 398 (1724)
T ss_dssp CEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHH
Confidence 99999999999999988875320 02346889999999999999999
Q ss_pred HHhcCCccEEEEecccccCCCCCCCCEEEE----ccC------CCChhHHHHHHhhhhcCCC--CccEEEEeecchHHHH
Q 009641 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK------PAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVKRF 447 (530)
Q Consensus 380 ~f~~g~~~iLVaT~~~~~GiDip~~~~VI~----~~~------p~s~~~y~Qr~GR~gR~g~--~g~~i~~~~~~~~~~~ 447 (530)
.|++|..+|||||+++++|||+|..++||. |++ |-++.+|.||+|||||.|. .|.+++++.+++...+
T Consensus 399 ~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~ 478 (1724)
T 4f92_B 399 LFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478 (1724)
T ss_dssp HHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHH
T ss_pred HHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHH
Confidence 999999999999999999999999998885 443 4579999999999999875 4999999999988877
Q ss_pred HHHHHH
Q 009641 448 KKLLQK 453 (530)
Q Consensus 448 ~~~~~~ 453 (530)
..++..
T Consensus 479 ~~ll~~ 484 (1724)
T 4f92_B 479 LSLLNQ 484 (1724)
T ss_dssp HHHTTT
T ss_pred HHHHcC
Confidence 776544
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-42 Score=366.81 Aligned_cols=330 Identities=17% Similarity=0.211 Sum_probs=240.9
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCC--CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~--~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
-.+.+.+.++.+|| +||++|.+|++.+...+..+ .+++++||||||||++|++|++..+.. +.+++|++||++
T Consensus 354 ~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----g~qvlvlaPtr~ 428 (780)
T 1gm5_A 354 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----GFQTAFMVPTSI 428 (780)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----TSCEEEECSCHH
T ss_pred chHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHH
Confidence 34667777889999 99999999999887643333 589999999999999999999988865 348999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCChHHHHHHhcCC
Q 009641 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATR 191 (530)
Q Consensus 113 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~Tp~~l~~~l~~~~ 191 (530)
|+.|+++.+++++...++++..++|+....+... .+..+.. .++|+|+||+.+.+
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~------------------~~~~l~~g~~~IvVgT~~ll~~------ 484 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEK------------------IKSGLRNGQIDVVIGTHALIQE------ 484 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHH------------------HHHHHHSSCCCEEEECTTHHHH------
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHhh------
Confidence 9999999999999888999999999987665432 2233334 48999999998754
Q ss_pred CCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 009641 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (530)
Q Consensus 192 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (530)
...+.++++||+||+|++..... ..+.. .....++++
T Consensus 485 ~~~~~~l~lVVIDEaHr~g~~qr--------~~l~~-----------------------------------~~~~~~vL~ 521 (780)
T 1gm5_A 485 DVHFKNLGLVIIDEQHRFGVKQR--------EALMN-----------------------------------KGKMVDTLV 521 (780)
T ss_dssp CCCCSCCCEEEEESCCCC-------------CCCCS-----------------------------------SSSCCCEEE
T ss_pred hhhccCCceEEecccchhhHHHH--------HHHHH-----------------------------------hCCCCCEEE
Confidence 24577899999999998622110 00000 002347899
Q ss_pred EeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh--cCCCcEEEEcCChH------
Q 009641 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE------ 343 (530)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVf~~s~~------ 343 (530)
+|||+.+...........+...+..... ....+. .......+...+...+.. ..+.+++|||++++
T Consensus 522 mSATp~p~tl~~~~~g~~~~s~i~~~p~---~r~~i~---~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~ 595 (780)
T 1gm5_A 522 MSATPIPRSMALAFYGDLDVTVIDEMPP---GRKEVQ---TMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLN 595 (780)
T ss_dssp EESSCCCHHHHHHHTCCSSCEEECCCCS---SCCCCE---ECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC-------
T ss_pred EeCCCCHHHHHHHHhCCcceeeeeccCC---CCcceE---EEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhh
Confidence 9999866543333222222222211110 001111 111223344445555542 24678999999764
Q ss_pred --HHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCC-ChhHHH
Q 009641 344 --STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYI 420 (530)
Q Consensus 344 --~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~-s~~~y~ 420 (530)
.++.+++.|....-.++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||+|++++||++++|. +...|.
T Consensus 596 ~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~ 675 (780)
T 1gm5_A 596 VKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLH 675 (780)
T ss_dssp -CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHH
Confidence 46777777765111247889999999999999999999999999999999999999999999999999996 688899
Q ss_pred HHHhhhhcCCCCccEEEEeecc
Q 009641 421 HRAGRTARAGQLGRCFTLLHKD 442 (530)
Q Consensus 421 Qr~GR~gR~g~~g~~i~~~~~~ 442 (530)
||+||+||.|+.|.|++++++.
T Consensus 676 Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 676 QLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp HHHHTSCCSSTTCEEECCCCSC
T ss_pred HHhcccCcCCCCCEEEEEECCC
Confidence 9999999999999999999853
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7.7e-42 Score=374.21 Aligned_cols=329 Identities=17% Similarity=0.162 Sum_probs=244.3
Q ss_pred HHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 44 ~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
..++| +|+++|.++++.+.. ++++++.||||||||++|++++...+.. +.++||++|+++|+.|+++.+++
T Consensus 34 ~~~~f-~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~----g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 34 RSWPF-ELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN----MTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCCSS-CCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHT
T ss_pred HhCCC-CCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHH
Confidence 35788 699999999988764 8999999999999999999988876543 44899999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEE
Q 009641 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
++. ++.++.++|+.... ..++|+|+||++|.+++.. ....+.++++|||
T Consensus 105 ~~~--~~~v~~l~G~~~~~----------------------------~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvVi 153 (997)
T 4a4z_A 105 TFD--DVNIGLITGDVQIN----------------------------PDANCLIMTTEILRSMLYR-GADLIRDVEFVIF 153 (997)
T ss_dssp TC----CCEEEECSSCEEC----------------------------TTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEE
T ss_pred HcC--CCeEEEEeCCCccC----------------------------CCCCEEEECHHHHHHHHHh-CchhhcCCCEEEE
Confidence 754 67889999987522 3459999999999998876 3455788999999
Q ss_pred echhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhh
Q 009641 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283 (530)
Q Consensus 204 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 283 (530)
||||++.+++++..++.++..++. ..+++++|||+++.. .+
T Consensus 154 DEaH~l~d~~~g~~~e~ii~~l~~--------------------------------------~v~iIlLSAT~~n~~-ef 194 (997)
T 4a4z_A 154 DEVHYVNDQDRGVVWEEVIIMLPQ--------------------------------------HVKFILLSATVPNTY-EF 194 (997)
T ss_dssp CCTTCCCTTCTTCCHHHHHHHSCT--------------------------------------TCEEEEEECCCTTHH-HH
T ss_pred ECcccccccchHHHHHHHHHhccc--------------------------------------CCCEEEEcCCCCChH-HH
Confidence 999999999888888888876542 237899999987543 22
Q ss_pred hhhc---c-CCceEEecCCccccCccc-----------------------------------------------------
Q 009641 284 AQLD---L-HHPLFLTTGETRYKLPER----------------------------------------------------- 306 (530)
Q Consensus 284 ~~~~---~-~~~~~~~~~~~~~~~~~~----------------------------------------------------- 306 (530)
..+. . .....+.......++...
T Consensus 195 ~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 274 (997)
T 4a4z_A 195 ANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGG 274 (997)
T ss_dssp HHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------------------
T ss_pred HHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccc
Confidence 2221 1 111111111110000000
Q ss_pred ------------------------------------ceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHH
Q 009641 307 ------------------------------------LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (530)
Q Consensus 307 ------------------------------------~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~ 350 (530)
...+........+...+...+......++||||++++.|+.++.
T Consensus 275 ~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~ 354 (997)
T 4a4z_A 275 RGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYAD 354 (997)
T ss_dssp ------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHH
Confidence 00011111233445667777777778899999999999999999
Q ss_pred HHHhcCCC------------------------------------cceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc
Q 009641 351 LLNHFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (530)
Q Consensus 351 ~L~~~~~~------------------------------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~ 394 (530)
.|...+.. ..++..+||+|++.+|..+++.|++|..+|||||++
T Consensus 355 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~ 434 (997)
T 4a4z_A 355 WLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATET 434 (997)
T ss_dssp TTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchH
Confidence 98654311 125789999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCCC---------ChhHHHHHHhhhhcCCC--CccEEEEee--cchHHHHHHHHH
Q 009641 395 MTRGMDVEGVNNVVNYDKPA---------YIKTYIHRAGRTARAGQ--LGRCFTLLH--KDEVKRFKKLLQ 452 (530)
Q Consensus 395 ~~~GiDip~~~~VI~~~~p~---------s~~~y~Qr~GR~gR~g~--~g~~i~~~~--~~~~~~~~~~~~ 452 (530)
+++|||+|+ ..||+++.|. |+.+|+||+|||||.|. .|.+++++. +.+...++.++.
T Consensus 435 ~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~ 504 (997)
T 4a4z_A 435 FAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTM 504 (997)
T ss_dssp HHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhc
Confidence 999999999 5566655555 99999999999999984 467777773 334555555544
No 37
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=5.2e-42 Score=355.12 Aligned_cols=356 Identities=17% Similarity=0.137 Sum_probs=244.3
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|..+++.++. |+ ++.++||+|||++|++|++..... +..++|++||++||.|+++++..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~----G~--Iaem~TGsGKTlaf~LP~l~~~l~----g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNE----RC--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHS----SE--EEECCTTSCHHHHHHHHHHHHHTT----SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccC----Ce--eeeecCCchHHHHHHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 675 999999999887764 65 999999999999999999865543 4479999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcCC-----CCCCCCcc
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (530)
.++++++++++|+.+..... +..+++|+|+||++| +++++..- ...++.+.
T Consensus 140 ~~lgl~v~~i~GG~~~~~r~-----------------------~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~ 196 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPAKR-----------------------EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLH 196 (853)
T ss_dssp HHTTCCEEECCTTCCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCC
T ss_pred HhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCc
Confidence 99999999999998754321 123579999999999 78776532 24568899
Q ss_pred EEEEechhHhh-hHh---------------hhhHHHHHHhhcccCc------------------ccccc-----------
Q 009641 200 YLVVDETDRLL-REA---------------YQAWLPTVLQLTRSDN------------------ENRFS----------- 234 (530)
Q Consensus 200 ~lViDEah~~~-~~~---------------~~~~~~~i~~~~~~~~------------------~~~~~----------- 234 (530)
++|+||||+|+ +.+ +...+..++..++... .....
T Consensus 197 ~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~ 276 (853)
T 2fsf_A 197 YALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEE 276 (853)
T ss_dssp EEEESCHHHHTTTTTTCEEEEEEC--------------------------------------------------------
T ss_pred EEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHH
Confidence 99999999998 432 4456666666664310 00000
Q ss_pred -------------cccccccccccchh-------hhh----------------c-cc-------cccCCCCC--------
Q 009641 235 -------------DASTFLPSAFGSLK-------TIR----------------R-CG-------VERGFKDK-------- 262 (530)
Q Consensus 235 -------------~~~~~~~~~~~~~~-------~~~----------------~-~~-------~~~~~~~~-------- 262 (530)
.++...+.....+. .+. . ++ ...+..+.
T Consensus 277 ~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~ 356 (853)
T 2fsf_A 277 LLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQ 356 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccce
Confidence 00000000000000 000 0 00 00000000
Q ss_pred CCC----------------ceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHH
Q 009641 263 PYP----------------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (530)
Q Consensus 263 ~~~----------------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (530)
..+ -.+...+|+|.......+...+--+.+.+++.. +....-....+......|...+...
T Consensus 357 I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~---p~~R~d~~d~v~~~~~~K~~al~~~ 433 (853)
T 2fsf_A 357 IQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNR---PMIRKDLPDLVYMTEAEKIQAIIED 433 (853)
T ss_dssp CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSS---CCCCEECCCEEESSHHHHHHHHHHH
T ss_pred ecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCC---CceeecCCcEEEeCHHHHHHHHHHH
Confidence 000 013456788877766666665544433333221 1111112223445567788888887
Q ss_pred HHh--cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCC
Q 009641 327 LQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404 (530)
Q Consensus 327 l~~--~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~ 404 (530)
+.. ..+.++||||+|++.++.+++.|...+ +++..+||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 434 i~~~~~~gqpvLVft~sie~se~Ls~~L~~~g---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 508 (853)
T 2fsf_A 434 IKERTAKGQPVLVGTISIEKSELVSNELTKAG---IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLG 508 (853)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHHTT---CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTT
T ss_pred HHHHhcCCCCEEEEECcHHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCC
Confidence 754 356799999999999999999999877 8899999999888888888889888 699999999999999963
Q ss_pred -------------------------------------CEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecch
Q 009641 405 -------------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (530)
Q Consensus 405 -------------------------------------~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~ 443 (530)
.+||+++.|.|.+.|.||+||+||.|.+|.+++|++.+|
T Consensus 509 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 509 GSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp CCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999999876
No 38
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.7e-41 Score=348.24 Aligned_cols=369 Identities=17% Similarity=0.150 Sum_probs=261.5
Q ss_pred HCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.+|+ .|+++|..+++.++. |+ |+.++||+|||++|.+|++..... +..++||+||++||.|.++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~----G~--Iaem~TGeGKTLa~~LP~~l~aL~----g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHL----GN--VAEMKTGEGKTLTCVLPAYLNALA----GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TE--EEECCTTSCHHHHTHHHHHHHHTT----TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhc----CC--EEEecCCCccHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3898 999999999987763 55 999999999999999999755443 347999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcCC-----CCCCCCc
Q 009641 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHL 198 (530)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~~~ 198 (530)
..++|+++++++|+.+...... ..+++|+|+||++| +++++..- ...++.+
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r~~-----------------------~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l 232 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDERRV-----------------------AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGH 232 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHHHH-----------------------HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHHHH-----------------------hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCC
Confidence 9999999999999987543321 23579999999999 77776531 3557789
Q ss_pred cEEEEechhHhh-h---------------HhhhhHHHHHHhhcccC---------cccccc---------------cccc
Q 009641 199 CYLVVDETDRLL-R---------------EAYQAWLPTVLQLTRSD---------NENRFS---------------DAST 238 (530)
Q Consensus 199 ~~lViDEah~~~-~---------------~~~~~~~~~i~~~~~~~---------~~~~~~---------------~~~~ 238 (530)
.++|+||||+|+ + .++...+..++..++.. ..-.+. .+..
T Consensus 233 ~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsa 312 (922)
T 1nkt_A 233 HYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEA 312 (922)
T ss_dssp CEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCS
T ss_pred CEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCC
Confidence 999999999998 3 35777888888887621 000000 0000
Q ss_pred cccccccchh----h---hhcc-------c---cccCCCC----------------------CCCC--------------
Q 009641 239 FLPSAFGSLK----T---IRRC-------G---VERGFKD----------------------KPYP-------------- 265 (530)
Q Consensus 239 ~~~~~~~~~~----~---~~~~-------~---~~~~~~~----------------------~~~~-------------- 265 (530)
..+.....+. . +.+. + +.+.+.. ...+
T Consensus 313 t~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyf 392 (922)
T 1nkt_A 313 ANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYF 392 (922)
T ss_dssp TTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHH
Confidence 0000000000 0 0000 0 0000000 0000
Q ss_pred --ceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh--cCCCcEEEEcCC
Q 009641 266 --RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (530)
Q Consensus 266 --~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~iVf~~s 341 (530)
-.+...+|+|.......+...+-.+.+.+++... ....-....+......|...+...+.. ..+.++||||+|
T Consensus 393 r~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p---~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~S 469 (922)
T 1nkt_A 393 RLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMP---MIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTS 469 (922)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSC---CCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCC---cccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 0135677888876666666655444333333221 111111223344556788888877753 356799999999
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCC-----------------
Q 009641 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV----------------- 404 (530)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~----------------- 404 (530)
++.++.+++.|...+ +++..+||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 470 ie~sE~Ls~~L~~~G---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~ 544 (922)
T 1nkt_A 470 VERSEYLSRQFTKRR---IPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLD 544 (922)
T ss_dssp HHHHHHHHHHHHHTT---CCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhcccc
Confidence 999999999999877 8899999998887877777888887 699999999999999965
Q ss_pred -----------------------------------CEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchH-----
Q 009641 405 -----------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV----- 444 (530)
Q Consensus 405 -----------------------------------~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~----- 444 (530)
.+||+++.|.|.+.|.||+||+||.|.+|.++.|++.+|.
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f 624 (922)
T 1nkt_A 545 PVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRF 624 (922)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHT
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHh
Confidence 4999999999999999999999999999999999998764
Q ss_pred --HHHHHHHHHhc
Q 009641 445 --KRFKKLLQKAD 455 (530)
Q Consensus 445 --~~~~~~~~~~~ 455 (530)
..+..++..+.
T Consensus 625 ~~~~~~~~~~~~~ 637 (922)
T 1nkt_A 625 NGAALETLLTRLN 637 (922)
T ss_dssp THHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhC
Confidence 22445555543
No 39
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=365.63 Aligned_cols=337 Identities=18% Similarity=0.239 Sum_probs=219.5
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC--CcccEEEEcCcHHHHHHH-HHHHHHhcc
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQV-KDVFAAIAP 126 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~--~~~~~lil~Pt~~L~~Q~-~~~l~~~~~ 126 (530)
+|+|+|.++++.++. ++++++.+|||+|||++|++|++..+..... .+.++||++|+++|+.|+ .+.+++++.
T Consensus 7 ~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 899999999998875 7899999999999999999999988766421 225899999999999999 999999876
Q ss_pred ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhc-----CCCCCCCCccEE
Q 009641 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-----TRGFTLEHLCYL 201 (530)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~-----~~~~~~~~~~~l 201 (530)
. ++++..++|+....... ..+...++|+|+||++|.+.+.+ ...+.+..+++|
T Consensus 83 ~-~~~v~~~~g~~~~~~~~---------------------~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISF---------------------PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 140 (699)
T ss_dssp T-TSCEEEEC----CCCCH---------------------HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEE
T ss_pred c-CceEEEEeCCcchhhHH---------------------HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEE
Confidence 5 58899999987543321 12235679999999999988842 134567889999
Q ss_pred EEechhHhhhHhhh-hHHHHHHhhc-ccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCC
Q 009641 202 VVDETDRLLREAYQ-AWLPTVLQLT-RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (530)
Q Consensus 202 ViDEah~~~~~~~~-~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 279 (530)
||||||++...... ..+..++... .... . ........+..+++++|||+...
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~-----------------------~---~~~~~~~~~~~~il~lTATp~~~ 194 (699)
T 4gl2_A 141 IIDECHHTNKEAVYNNIMRHYLMQKLKNNR-----------------------L---KKENKPVIPLPQILGLTASPGVG 194 (699)
T ss_dssp EEESGGGCBTTBSSCSHHHHHHHHHHHHHH-----------------------H---HC----CCCCCEEEEECSCCCCC
T ss_pred EEECccccCccchHHHHHHHHHHhhhcccc-----------------------c---ccccccCCCCCEEEEeccccccc
Confidence 99999998554322 2222222210 0000 0 00000111233789999999874
Q ss_pred h--------hhhh---hhc------------------cCCceE-Ee-cCCccc---------------------cCcc-c
Q 009641 280 P--------NKLA---QLD------------------LHHPLF-LT-TGETRY---------------------KLPE-R 306 (530)
Q Consensus 280 ~--------~~~~---~~~------------------~~~~~~-~~-~~~~~~---------------------~~~~-~ 306 (530)
. ..+. ... ...|.. +. ...... +... .
T Consensus 195 ~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g 274 (699)
T 4gl2_A 195 GATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFG 274 (699)
T ss_dssp SCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSS
T ss_pred ccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhcc
Confidence 1 1111 100 011110 00 000000 0000 0
Q ss_pred c-------------------------------------------------------------------------------
Q 009641 307 L------------------------------------------------------------------------------- 307 (530)
Q Consensus 307 ~------------------------------------------------------------------------------- 307 (530)
.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (699)
T 4gl2_A 275 TQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDET 354 (699)
T ss_dssp SHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchh
Confidence 0
Q ss_pred ---------------eeeEe-eccCCCcHHHHHHHHHh----cC-CCcEEEEcCChHHHHHHHHHHHhcC---CCcceEE
Q 009641 308 ---------------ESYKL-ICESKLKPLYLVALLQS----LG-EEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIK 363 (530)
Q Consensus 308 ---------------~~~~~-~~~~~~k~~~l~~~l~~----~~-~~~~iVf~~s~~~~~~l~~~L~~~~---~~~~~v~ 363 (530)
..... ......|...|..++.. .+ ++++||||++++.++.+++.|.... ..++.+.
T Consensus 355 ~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~ 434 (699)
T 4gl2_A 355 DRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAH 434 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CE
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceE
Confidence 00000 00012333334444432 23 7899999999999999999998751 1148899
Q ss_pred Ecccc--------CCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccE
Q 009641 364 EYSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (530)
Q Consensus 364 ~~h~~--------~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~ 435 (530)
.+||+ |++.+|.++++.|++|+.+|||||+++++|||+|++++||+||+|+|+.+|+||+||+||.| .+
T Consensus 435 ~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~ 511 (699)
T 4gl2_A 435 HLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---ST 511 (699)
T ss_dssp ECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CE
T ss_pred EEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ce
Confidence 99999 99999999999999999999999999999999999999999999999999999999976544 55
Q ss_pred EEEeec
Q 009641 436 FTLLHK 441 (530)
Q Consensus 436 i~~~~~ 441 (530)
++++.+
T Consensus 512 ~~l~~~ 517 (699)
T 4gl2_A 512 YVLVAH 517 (699)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555544
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.4e-40 Score=367.71 Aligned_cols=330 Identities=18% Similarity=0.187 Sum_probs=247.9
Q ss_pred CCHHHHHHH-HHCCCCccchhhHHHHHHhcCCCCCCC--cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcH
Q 009641 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (530)
Q Consensus 35 l~~~i~~~l-~~~g~~~~~~~Q~~a~~~~~~~~~~~~--~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~ 111 (530)
+++...+.+ ..+|| ++||+|.+|++.++..+..++ ++++++|||+|||.+++.+++..+.. +.+++|++||+
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~ 662 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTT 662 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSH
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechH
Confidence 455555555 45899 579999999998876443454 89999999999999999888876653 44899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCChHHHHHHhcC
Q 009641 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINAT 190 (530)
Q Consensus 112 ~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~Tp~~l~~~l~~~ 190 (530)
+|+.|+++.+++.+...++++..++|.....+... .+..+.. .++|+|+||+.+.
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~------------------~~~~l~~g~~dIvV~T~~ll~------ 718 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ------------------ILAEVAEGKIDILIGTHKLLQ------ 718 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHH------------------HHHHHHTTCCSEEEECTHHHH------
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHh------
Confidence 99999999999988877889999888776554422 2233333 4899999998663
Q ss_pred CCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeE
Q 009641 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (530)
Q Consensus 191 ~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (530)
....+.++++|||||||++... ....+..+.. ..+++
T Consensus 719 ~~~~~~~l~lvIiDEaH~~g~~-----~~~~l~~l~~--------------------------------------~~~vl 755 (1151)
T 2eyq_A 719 SDVKFKDLGLLIVDEEHRFGVR-----HKERIKAMRA--------------------------------------NVDIL 755 (1151)
T ss_dssp SCCCCSSEEEEEEESGGGSCHH-----HHHHHHHHHT--------------------------------------TSEEE
T ss_pred CCccccccceEEEechHhcChH-----HHHHHHHhcC--------------------------------------CCCEE
Confidence 2356788999999999996322 2223332221 12789
Q ss_pred EEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHh-cCCCcEEEEcCChHHHHHHH
Q 009641 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLC 349 (530)
Q Consensus 271 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~iVf~~s~~~~~~l~ 349 (530)
++|||+.+.........+.++..+...... ...+..+... ..+......+++. ..+++++|||++++.++.++
T Consensus 756 ~lSATp~p~~l~~~~~~~~~~~~i~~~~~~---r~~i~~~~~~---~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~ 829 (1151)
T 2eyq_A 756 TLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVRE---YDSMVVREAILREILRGGQVYYLYNDVENIQKAA 829 (1151)
T ss_dssp EEESSCCCHHHHHHHTTTSEEEECCCCCCB---CBCEEEEEEE---CCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHH
T ss_pred EEcCCCChhhHHHHHhcCCCceEEecCCCC---ccccEEEEec---CCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHH
Confidence 999999876665555555544443322111 1112222221 1222333333332 35789999999999999999
Q ss_pred HHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccC-CCChhHHHHHHhhhhc
Q 009641 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-PAYIKTYIHRAGRTAR 428 (530)
Q Consensus 350 ~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~-p~s~~~y~Qr~GR~gR 428 (530)
+.|.... .+..+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++. +.+..+|+||+||+||
T Consensus 830 ~~L~~~~-p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR 908 (1151)
T 2eyq_A 830 ERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 908 (1151)
T ss_dssp HHHHHHC-TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCB
T ss_pred HHHHHhC-CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCc
Confidence 9998762 2378999999999999999999999999999999999999999999999999988 5688999999999999
Q ss_pred CCCCccEEEEeecch
Q 009641 429 AGQLGRCFTLLHKDE 443 (530)
Q Consensus 429 ~g~~g~~i~~~~~~~ 443 (530)
.|+.|.|++++.+++
T Consensus 909 ~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 909 SHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTBCEEEEEEECCGG
T ss_pred CCCceEEEEEECCcc
Confidence 999999999998754
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=7.1e-41 Score=349.29 Aligned_cols=311 Identities=14% Similarity=0.094 Sum_probs=225.7
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
+++.+.+++.+. +..++|+|+.++ +.+..++++++.||||||||++|++|+++.+.. .+.++||++||++||
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i----~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa 228 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDE----DIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVA 228 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCG----GGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCH----HHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHH
Confidence 566666666554 478999998764 444569999999999999999999999998876 356899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCC
Q 009641 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~ 194 (530)
.|+++.++. ..+.. .+... . .....+..+.++|.+.+...+... ..
T Consensus 229 ~Qi~~~l~~------~~v~~-~~~~l-~------------------------~~~tp~~~i~~~t~~~l~~~l~~~--~~ 274 (618)
T 2whx_A 229 AEMEEALRG------LPIRY-QTPAV-K------------------------SDHTGREIVDLMCHATFTTRLLSS--TR 274 (618)
T ss_dssp HHHHHHTTT------SCEEE-CCTTS-S------------------------CCCCSSSCEEEEEHHHHHHHHHHC--SS
T ss_pred HHHHHHhcC------CceeE-ecccc-e------------------------eccCCCceEEEEChHHHHHHHhcc--cc
Confidence 999988762 33332 11110 0 001123467788888887766652 45
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeE
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (530)
+.++++||+||||++ +.++...+..+...++. +..+++++||
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-------------------------------------~~~q~il~SA 316 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTA 316 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-------------------------------------TSCEEEEECS
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-------------------------------------cCccEEEEEC
Confidence 788999999999998 77777777777765432 1238999999
Q ss_pred eecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHh
Q 009641 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (530)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~ 354 (530)
|++.....+.. .++..+...... + . .+...+...+.. ..+++||||++++.|+.+++.|..
T Consensus 317 T~~~~~~~~~~---~~~~~~~v~~~~---~-----------~-~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~ 377 (618)
T 2whx_A 317 TPPGSTDPFPQ---SNSPIEDIEREI---P-----------E-RSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRK 377 (618)
T ss_dssp SCTTCCCSSCC---CSSCEEEEECCC---C-----------S-SCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCchhhhhhhc---cCCceeeecccC---C-----------H-HHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHH
Confidence 99877654443 222222221110 0 0 011112222333 367999999999999999999998
Q ss_pred cCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEE--------------------EEccCCC
Q 009641 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV--------------------VNYDKPA 414 (530)
Q Consensus 355 ~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~V--------------------I~~~~p~ 414 (530)
.+ +.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++| |+++.|.
T Consensus 378 ~g---~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~ 449 (618)
T 2whx_A 378 SG---KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPV 449 (618)
T ss_dssp TT---CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred cC---CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccC
Confidence 75 889999984 688899999999999999999999999998 8888 7778899
Q ss_pred ChhHHHHHHhhhhcCCC-CccEEEEee---cchHHHHHHHHH
Q 009641 415 YIKTYIHRAGRTARAGQ-LGRCFTLLH---KDEVKRFKKLLQ 452 (530)
Q Consensus 415 s~~~y~Qr~GR~gR~g~-~g~~i~~~~---~~~~~~~~~~~~ 452 (530)
+..+|+||+||+||.|. .|.+++|++ ++|...+..+.+
T Consensus 450 s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 450 TPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 99999999999999965 899999997 666555554444
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.2e-40 Score=341.55 Aligned_cols=310 Identities=18% Similarity=0.196 Sum_probs=226.1
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
+|+|+|.+|++.++. ++++++++|||+|||++++.++...+... +.++|||+||++|+.|+++.++++....+
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC---SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC---CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 899999999998774 68999999999999999999888877653 33899999999999999999999876666
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
..+..++|+.....+ +...++|+|+||+.+... ....+.++++||+||||++
T Consensus 186 ~~v~~~~~~~~~~~~------------------------~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~ 237 (510)
T 2oca_A 186 AMIKKIGGGASKDDK------------------------YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLA 237 (510)
T ss_dssp GGEEECGGGCCTTGG------------------------GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGC
T ss_pred cceEEEecCCccccc------------------------cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCC
Confidence 788888887653321 235679999999976532 2244678999999999998
Q ss_pred hhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhh-hcc
Q 009641 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDL 288 (530)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~~ 288 (530)
.... +..++..+. +..+.+++|||++........ ...
T Consensus 238 ~~~~----~~~il~~~~--------------------------------------~~~~~l~lSATp~~~~~~~~~~~~~ 275 (510)
T 2oca_A 238 TGKS----ISSIISGLN--------------------------------------NCMFKFGLSGSLRDGKANIMQYVGM 275 (510)
T ss_dssp CHHH----HHHHGGGCT--------------------------------------TCCEEEEEESCGGGCSSCHHHHHHH
T ss_pred Cccc----HHHHHHhcc--------------------------------------cCcEEEEEEeCCCCCcccHHHhHHh
Confidence 6532 334433321 122688999999766433221 112
Q ss_pred CCceEEecCCccc-----cCccccee---------------------eEeeccCCCcHHHHHHHHHhc---CCCcEEEEc
Q 009641 289 HHPLFLTTGETRY-----KLPERLES---------------------YKLICESKLKPLYLVALLQSL---GEEKCIVFT 339 (530)
Q Consensus 289 ~~~~~~~~~~~~~-----~~~~~~~~---------------------~~~~~~~~~k~~~l~~~l~~~---~~~~~iVf~ 339 (530)
..+.......... ..+..... +........+...+..++... .+.++||||
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~ 355 (510)
T 2oca_A 276 FGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFK 355 (510)
T ss_dssp HCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred hCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 2222222211100 00000000 001111122334455555443 455667777
Q ss_pred CChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEe-cccccCCCCCCCCEEEEccCCCChhH
Q 009641 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKT 418 (530)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT-~~~~~GiDip~~~~VI~~~~p~s~~~ 418 (530)
+ +++++.+++.|...+ ..+..+||+++..+|.++++.|++|+.+||||| +++++|+|+|++++||++++|.++..
T Consensus 356 ~-~~~~~~l~~~L~~~~---~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~ 431 (510)
T 2oca_A 356 H-VSHGKAIFDLIKNEY---DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKII 431 (510)
T ss_dssp S-HHHHHHHHHHHHTTC---SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCH
T ss_pred c-HHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHH
Confidence 6 899999999999765 588999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCccEEEEee
Q 009641 419 YIHRAGRTARAGQLGRCFTLLH 440 (530)
Q Consensus 419 y~Qr~GR~gR~g~~g~~i~~~~ 440 (530)
|+||+||+||.|+.|..+++++
T Consensus 432 ~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 432 VLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHhcccccCCCCceEEEEE
Confidence 9999999999998875555554
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.6e-40 Score=334.41 Aligned_cols=289 Identities=16% Similarity=0.186 Sum_probs=208.9
Q ss_pred CCCccchhhHHHHHHhcCCCCCCCcE-EEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 47 GISSLFPVQVAVWQETIGPGLFERDL-CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~-li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
|+.+|+|+|+ +++.++ .++++ ++.||||||||++|++|++..+.. .+.++||++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIF----RKKRLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGG----STTCEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHH----hcCCeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc---
Confidence 7889999995 555554 46665 999999999999999999987765 34589999999999999998875
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEec
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDE 205 (530)
+..+....+.... ....+..|.++|++.+.+.+.+. ..+.++++||+||
T Consensus 70 ---g~~v~~~~~~~~~--------------------------~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDE 118 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS--------------------------DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDE 118 (451)
T ss_dssp ---TSCEEECCTTCSC--------------------------CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEET
T ss_pred ---Cceeeeeeccccc--------------------------cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeC
Confidence 3333322211100 01234579999999998887753 4577899999999
Q ss_pred hhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhh
Q 009641 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (530)
Q Consensus 206 ah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 285 (530)
||++ +..+...+..+...... +..+++++|||++........
T Consensus 119 ah~~-~~~~~~~~~~~~~~~~~-------------------------------------~~~~~i~~SAT~~~~~~~~~~ 160 (451)
T 2jlq_A 119 AHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTATPPGSTDPFPQ 160 (451)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCC
T ss_pred CccC-CcchHHHHHHHHHhhcC-------------------------------------CCceEEEEccCCCccchhhhc
Confidence 9977 44333322222221110 234899999999875544322
Q ss_pred hccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEc
Q 009641 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (530)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~ 365 (530)
..+..+.... ..+. ..+ .. +...+.. ..+++||||++++.++.+++.|...+ +.+..+
T Consensus 161 ---~~~~~~~~~~---~~p~--~~~------~~----~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g---~~~~~l 218 (451)
T 2jlq_A 161 ---SNSPIEDIER---EIPE--RSW------NT----GFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQL 218 (451)
T ss_dssp ---CSSCEEEEEC---CCCS--SCC------SS----SCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTT---CCEEEE
T ss_pred ---CCCceEecCc---cCCc--hhh------HH----HHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcC---CeEEEC
Confidence 2222222211 1110 001 01 1222333 35699999999999999999999765 788899
Q ss_pred cccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEcc--------------------CCCChhHHHHHHhh
Q 009641 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--------------------KPAYIKTYIHRAGR 425 (530)
Q Consensus 366 h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~--------------------~p~s~~~y~Qr~GR 425 (530)
||++. .++++.|++|+.+|||||+++++|+|+|+ ++||++| .|.+..+|+||+||
T Consensus 219 h~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GR 293 (451)
T 2jlq_A 219 SRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGR 293 (451)
T ss_dssp CTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTT
T ss_pred CHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccc
Confidence 99764 57899999999999999999999999999 9999998 99999999999999
Q ss_pred hhcCCC-CccEEEEeecc
Q 009641 426 TARAGQ-LGRCFTLLHKD 442 (530)
Q Consensus 426 ~gR~g~-~g~~i~~~~~~ 442 (530)
+||.|. .|.+++|+..+
T Consensus 294 aGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 294 IGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp SSCCTTCCCEEEEECSCC
T ss_pred cCCCCCCCccEEEEeCCc
Confidence 999998 78888887543
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.7e-40 Score=337.77 Aligned_cols=293 Identities=25% Similarity=0.321 Sum_probs=218.3
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
+|+|+|.+|++.++. ++++++.+|||+|||++++.++... +.++||++|+++|+.||.+.++++ +
T Consensus 93 ~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 799999999988764 5789999999999999998887754 347999999999999999999884 6
Q ss_pred ce-EEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 130 ~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
++ +..++|+.. ...+|+|+||+.+...+... ..++++||+||||+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (472)
T ss_dssp GGGEEEBSSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGG
T ss_pred CcceEEECCCcC------------------------------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcC
Confidence 77 888888764 23599999999998766531 23589999999999
Q ss_pred hhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCC---------
Q 009641 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD--------- 279 (530)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~--------- 279 (530)
+.+..+.. ++..++ ..+.+++|||+...
T Consensus 204 ~~~~~~~~----~~~~~~---------------------------------------~~~~l~lSATp~~~~~~~~~l~~ 240 (472)
T 2fwr_A 204 LPAESYVQ----IAQMSI---------------------------------------APFRLGLTATFEREDGRHEILKE 240 (472)
T ss_dssp TTSTTTHH----HHHTCC---------------------------------------CSEEEEEESCCCCTTSGGGSHHH
T ss_pred CCChHHHH----HHHhcC---------------------------------------CCeEEEEecCccCCCCHHHHHHH
Confidence 97766543 333221 12678899998732
Q ss_pred ----------hhhhhhhccCCceEEe--cCCccc-----------------------cCcccceee--------------
Q 009641 280 ----------PNKLAQLDLHHPLFLT--TGETRY-----------------------KLPERLESY-------------- 310 (530)
Q Consensus 280 ----------~~~~~~~~~~~~~~~~--~~~~~~-----------------------~~~~~~~~~-------------- 310 (530)
...+...++..+.... ...... ........+
T Consensus 241 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (472)
T 2fwr_A 241 VVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEAL 320 (472)
T ss_dssp HTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTT
T ss_pred HhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHH
Confidence 2222111222221110 000000 000000000
Q ss_pred -------EeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhc
Q 009641 311 -------KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (530)
Q Consensus 311 -------~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 383 (530)
...+....|...+..++....++++||||++++.++.+++.|. +..+||+++..+|.++++.|++
T Consensus 321 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 321 RAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhC
Confidence 0112344566778888888788999999999999999998873 4468999999999999999999
Q ss_pred CCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCC-ccEE--EEeecc
Q 009641 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL-GRCF--TLLHKD 442 (530)
Q Consensus 384 g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~-g~~i--~~~~~~ 442 (530)
|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+. +.++ .+++.+
T Consensus 393 g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 393 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999855 4444 456554
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.5e-40 Score=335.64 Aligned_cols=279 Identities=15% Similarity=0.155 Sum_probs=189.4
Q ss_pred CCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHH
Q 009641 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (530)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~ 145 (530)
+..++|++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.++.+ .+....+..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~------ 69 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF------ 69 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC------
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc------
Confidence 4568999999999999999999999988766 3458999999999999999988743 222211110
Q ss_pred HHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhc-------CCCCCCCCccEEEEechhHhhhHhhhhHH
Q 009641 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-------TRGFTLEHLCYLVVDETDRLLREAYQAWL 218 (530)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~-------~~~~~~~~~~~lViDEah~~~~~~~~~~~ 218 (530)
. .++||+++..++.+ .....+.++++||+||||++ +.++...+
T Consensus 70 ----------------------------~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~ 119 (440)
T 1yks_A 70 ----------------------------S-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAAR 119 (440)
T ss_dssp ----------------------------C-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHH
T ss_pred ----------------------------e-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHH
Confidence 0 25566544322211 01234778999999999998 44443322
Q ss_pred HHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCC
Q 009641 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (530)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (530)
..+...... +..+++++|||+++....+.... .+....
T Consensus 120 ~~~~~~~~~-------------------------------------~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~--- 157 (440)
T 1yks_A 120 GWAAHRARA-------------------------------------NESATILMTATPPGTSDEFPHSN--GEIEDV--- 157 (440)
T ss_dssp HHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCCCS--SCEEEE---
T ss_pred HHHHHHhcc-------------------------------------CCceEEEEeCCCCchhhhhhhcC--CCeeEe---
Confidence 222222211 12389999999987765544321 111110
Q ss_pred ccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHH
Q 009641 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378 (530)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 378 (530)
........+... ...+.. .++++||||++++.++.+++.|...+ +.+..+|| .+|.+++
T Consensus 158 ------------~~~~~~~~~~~~-~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~---~~v~~lhg----~~R~~~~ 216 (440)
T 1yks_A 158 ------------QTDIPSEPWNTG-HDWILA-DKRPTAWFLPSIRAANVMAASLRKAG---KSVVVLNR----KTFEREY 216 (440)
T ss_dssp ------------ECCCCSSCCSSS-CHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT---CCEEECCS----SSCC---
T ss_pred ------------eeccChHHHHHH-HHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcC---CCEEEecc----hhHHHHH
Confidence 000111111111 122222 26799999999999999999999865 88999999 3588999
Q ss_pred HHHhcCCccEEEEecccccCCCCCCCCEEEE-------------------ccCCCChhHHHHHHhhhhcC-CCCccEEEE
Q 009641 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------YDKPAYIKTYIHRAGRTARA-GQLGRCFTL 438 (530)
Q Consensus 379 ~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~-------------------~~~p~s~~~y~Qr~GR~gR~-g~~g~~i~~ 438 (530)
+.|++|+.+|||||+++++|||+| +++||+ ++.|.+..+|+||+||+||. |++|.|++|
T Consensus 217 ~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 217 PTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp -----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred hhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 999999999999999999999999 999996 88999999999999999997 688999999
Q ss_pred e---ecchHHHHHHHHHH
Q 009641 439 L---HKDEVKRFKKLLQK 453 (530)
Q Consensus 439 ~---~~~~~~~~~~~~~~ 453 (530)
+ ++++...+..+...
T Consensus 296 ~~~~~~~~~~~l~~l~~~ 313 (440)
T 1yks_A 296 SEPTSENNAHHVCWLEAS 313 (440)
T ss_dssp CSCCCCCCTTBHHHHHHH
T ss_pred eccCChhhhhhhhhhhHH
Confidence 6 56665555544443
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.9e-38 Score=334.87 Aligned_cols=330 Identities=18% Similarity=0.213 Sum_probs=236.1
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc-CCCcccEEEEcCcHH
Q 009641 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRD 112 (530)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~-~~~~~~~lil~Pt~~ 112 (530)
++++.+.+.+.+.| ..|++.|++++..++. .++++++.||||||||. ++|++...... ...+.+++|++|+++
T Consensus 78 ~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 78 EFTPKYVDILKIRR-ELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp BCCHHHHHHHHHHT-TSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred CCCHHHHHHHHHhh-cCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHH
Confidence 48999999999988 7999999999887764 46789999999999998 35554221111 112457999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCC
Q 009641 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (530)
Q Consensus 113 L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~ 192 (530)
|+.|+++.+.... +..++..+|.....+ .......+|+++||+++...+...
T Consensus 152 La~q~~~~l~~~~---~~~v~~~vG~~i~~~-----------------------~~~~~~~~I~v~T~G~l~r~l~~~-- 203 (773)
T 2xau_A 152 AAMSVAQRVAEEM---DVKLGEEVGYSIRFE-----------------------NKTSNKTILKYMTDGMLLREAMED-- 203 (773)
T ss_dssp HHHHHHHHHHHHT---TCCBTTTEEEEETTE-----------------------EECCTTCSEEEEEHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHh---CCchhheecceeccc-----------------------cccCCCCCEEEECHHHHHHHHhhC--
Confidence 9999998776543 222222222110000 001235699999999999877652
Q ss_pred CCCCCccEEEEechhH-hhhHh-hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeE
Q 009641 193 FTLEHLCYLVVDETDR-LLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (530)
Q Consensus 193 ~~~~~~~~lViDEah~-~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (530)
..+.++++||+||+|. .++.. ....+..+.... +..+++
T Consensus 204 ~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---------------------------------------~~~~iI 244 (773)
T 2xau_A 204 HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---------------------------------------PDLKII 244 (773)
T ss_dssp TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---------------------------------------TTCEEE
T ss_pred ccccCCCEEEecCccccccchHHHHHHHHHHHHhC---------------------------------------CCceEE
Confidence 4578899999999996 44432 223334433321 123799
Q ss_pred EEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHH----HHHHHHhcCCCcEEEEcCChHHHH
Q 009641 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY----LVALLQSLGEEKCIVFTSSVESTH 346 (530)
Q Consensus 271 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----l~~~l~~~~~~~~iVf~~s~~~~~ 346 (530)
++|||++ ...+.......++ +...... ..+..++........... +..+.....++++||||++++.++
T Consensus 245 l~SAT~~--~~~l~~~~~~~~v-i~v~gr~----~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~ 317 (773)
T 2xau_A 245 IMSATLD--AEKFQRYFNDAPL-LAVPGRT----YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIE 317 (773)
T ss_dssp EEESCSC--CHHHHHHTTSCCE-EECCCCC----CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHH
T ss_pred EEecccc--HHHHHHHhcCCCc-ccccCcc----cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHH
Confidence 9999994 4445444433443 3322221 123333333333333322 333333446889999999999999
Q ss_pred HHHHHHHhc--------CCCcceEEEccccCCHHHHHHHHHHHh-----cCCccEEEEecccccCCCCCCCCEEEEccC-
Q 009641 347 RLCTLLNHF--------GELRIKIKEYSGLQRQSVRSKTLKAFR-----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDK- 412 (530)
Q Consensus 347 ~l~~~L~~~--------~~~~~~v~~~h~~~~~~~R~~~~~~f~-----~g~~~iLVaT~~~~~GiDip~~~~VI~~~~- 412 (530)
.+++.|... ...++.+..+||+|++.+|.++++.|+ +|..+|||||+++++|||+|++++||+++.
T Consensus 318 ~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 318 DAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEE
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCc
Confidence 999999741 123578999999999999999999999 999999999999999999999999999887
Q ss_pred -----------------CCChhHHHHHHhhhhcCCCCccEEEEeecchH
Q 009641 413 -----------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (530)
Q Consensus 413 -----------------p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~ 444 (530)
|.|..+|+||+||+||. .+|.|+.|+++.+.
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred cceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 88999999999999999 78999999988765
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.3e-38 Score=328.63 Aligned_cols=280 Identities=18% Similarity=0.262 Sum_probs=206.0
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
.++++|+. +...+..++++++.||||||||.+|.+|+++ ++.++||++|||+||.|+++.+.+.. +
T Consensus 217 P~~~~q~~----i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSS----PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCS----CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHH----HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 45566655 3555556789999999999999999988875 24489999999999999998776653 4
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
..+...+|+.. ...+++|+|+||++|+ .+ ..+.++++++|||||||+
T Consensus 283 ~~vg~~vG~~~----------------------------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~- 329 (666)
T 3o8b_A 283 IDPNIRTGVRT----------------------------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHS- 329 (666)
T ss_dssp CCCEEECSSCE----------------------------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTC-
T ss_pred CCeeEEECcEe----------------------------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccchh-
Confidence 56666777643 1255799999999984 33 456788899999999974
Q ss_pred hhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccC
Q 009641 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (530)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 289 (530)
++.++...+..++..++.... ...+++|||++..+.. .
T Consensus 330 l~~~~~~~l~~Il~~l~~~~~------------------------------------~llil~SAT~~~~i~~------~ 367 (666)
T 3o8b_A 330 TDSTTILGIGTVLDQAETAGA------------------------------------RLVVLATATPPGSVTV------P 367 (666)
T ss_dssp CSHHHHHHHHHHHHHTTTTTC------------------------------------SEEEEEESSCTTCCCC------C
T ss_pred cCccHHHHHHHHHHhhhhcCC------------------------------------ceEEEECCCCCccccc------C
Confidence 577777778888777653221 1357779999874321 1
Q ss_pred CceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccC
Q 009641 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369 (530)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~ 369 (530)
.+......... ...+..+ ..... +.....+++||||++++.++.+++.|...+ +.+..+||+|
T Consensus 368 ~p~i~~v~~~~---~~~i~~~----~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g---~~v~~lHG~l 430 (666)
T 3o8b_A 368 HPNIEEVALSN---TGEIPFY----GKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLG---INAVAYYRGL 430 (666)
T ss_dssp CTTEEEEECBS---CSSEEET----TEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECTTS
T ss_pred CcceEEEeecc---cchhHHH----Hhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCC---CcEEEecCCC
Confidence 11111110000 0000000 00000 123357899999999999999999999765 8999999999
Q ss_pred CHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEE----------Ecc-----------CCCChhHHHHHHhhhhc
Q 009641 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV----------NYD-----------KPAYIKTYIHRAGRTAR 428 (530)
Q Consensus 370 ~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI----------~~~-----------~p~s~~~y~Qr~GR~gR 428 (530)
++.+ |+++..+|||||+++++|||+| +++|| ||| .|.+.++|+||+||+||
T Consensus 431 ~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 431 DVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp CGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred CHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC
Confidence 9865 4566779999999999999997 99988 677 89999999999999999
Q ss_pred CCCCccEEEEeecchHH
Q 009641 429 AGQLGRCFTLLHKDEVK 445 (530)
Q Consensus 429 ~g~~g~~i~~~~~~~~~ 445 (530)
|++|. +.|+++.|..
T Consensus 503 -g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 503 -GRRGI-YRFVTPGERP 517 (666)
T ss_dssp -SSCEE-EEESCCCCBC
T ss_pred -CCCCE-EEEEecchhh
Confidence 89999 9999887644
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.3e-38 Score=334.22 Aligned_cols=304 Identities=14% Similarity=0.165 Sum_probs=207.7
Q ss_pred HHHHCCCC-----ccchhhH-----HHHHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 42 ALQNMGIS-----SLFPVQV-----AVWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 42 ~l~~~g~~-----~~~~~Q~-----~a~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
+|..+||. .|+++|+ ++++.++. .+..++|++++||||||||++|++|+++.+.. .+.++||++|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaP 278 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAP 278 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEES
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEcc
Confidence 45567777 9999999 77554431 11268999999999999999999999988765 3468999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhc
Q 009641 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (530)
Q Consensus 110 t~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~ 189 (530)
|++||.|+++.++.+ ++. ...+... .....+.-+-+.+.+.+...+..
T Consensus 279 Tr~La~Q~~~~l~~~----~i~--~~~~~l~--------------------------~v~tp~~ll~~l~~~~l~~~l~~ 326 (673)
T 2wv9_A 279 TRVVAAEMAEALRGL----PVR--YLTPAVQ--------------------------REHSGNEIVDVMCHATLTHRLMS 326 (673)
T ss_dssp SHHHHHHHHHHTTTS----CCE--ECCC-----------------------------CCCCSCCCEEEEEHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC----Cee--eeccccc--------------------------ccCCHHHHHHHHHhhhhHHHHhc
Confidence 999999999888754 221 1111000 00001113334454555444443
Q ss_pred CCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceee
Q 009641 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (530)
Q Consensus 190 ~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (530)
...+.++++||+||||++ +..+...+..+...... +..++
T Consensus 327 --~~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-------------------------------------~~~~v 366 (673)
T 2wv9_A 327 --PLRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-------------------------------------GEAAA 366 (673)
T ss_dssp --SSCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-------------------------------------TSCEE
T ss_pred --ccccccceEEEEeCCccc-CccHHHHHHHHHHhccc-------------------------------------cCCcE
Confidence 245788999999999998 22222222222222110 12389
Q ss_pred EEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHH
Q 009641 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (530)
Q Consensus 270 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~ 349 (530)
+++|||++..+..+... ..++..... ......... +...+.. ..+++||||++++.++.++
T Consensus 367 l~~SAT~~~~i~~~~~~--~~~i~~v~~---------------~~~~~~~~~-~l~~l~~-~~~~~lVF~~s~~~~e~la 427 (673)
T 2wv9_A 367 IFMTATPPGTSDPFPDT--NSPVHDVSS---------------EIPDRAWSS-GFEWITD-YAGKTVWFVASVKMSNEIA 427 (673)
T ss_dssp EEECSSCTTCCCSSCCC--SSCEEEEEC---------------CCCSSCCSS-CCHHHHS-CCSCEEEECSSHHHHHHHH
T ss_pred EEEcCCCChhhhhhccc--CCceEEEee---------------ecCHHHHHH-HHHHHHh-CCCCEEEEECCHHHHHHHH
Confidence 99999998776544332 112111000 001111111 1122222 4789999999999999999
Q ss_pred HHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEE--------------------
Q 009641 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------- 409 (530)
Q Consensus 350 ~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~-------------------- 409 (530)
+.|...+ +.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++||+
T Consensus 428 ~~L~~~g---~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll 499 (673)
T 2wv9_A 428 QCLQRAG---KRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILS 499 (673)
T ss_dssp HHHHTTT---CCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEEC
T ss_pred HHHHhCC---CeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceec
Confidence 9999765 889999994 699999999999999999999999999999 999998
Q ss_pred ccCCCChhHHHHHHhhhhcC-CCCccEEEEe---ecchHHHH
Q 009641 410 YDKPAYIKTYIHRAGRTARA-GQLGRCFTLL---HKDEVKRF 447 (530)
Q Consensus 410 ~~~p~s~~~y~Qr~GR~gR~-g~~g~~i~~~---~~~~~~~~ 447 (530)
|+.|.+..+|+||+||+||. |+.|.+++|+ ++.|...+
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l 541 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLA 541 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBH
T ss_pred ccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHH
Confidence 66899999999999999998 7889999996 45554333
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5e-38 Score=319.18 Aligned_cols=269 Identities=18% Similarity=0.229 Sum_probs=193.3
Q ss_pred CCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHH
Q 009641 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (530)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~ 146 (530)
..++++++.||||||||++|++|+++.+.. .+.++||++||++|+.|+++.++ +..+....+.....
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~---- 85 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE---- 85 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC----------
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC----
Confidence 357899999999999999999999988865 34589999999999999999886 33333322211100
Q ss_pred HHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh-----hhHhhhhHHHHH
Q 009641 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-----LREAYQAWLPTV 221 (530)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~-----~~~~~~~~~~~i 221 (530)
...+..+.++|.+.+...+... ..+.++++|||||||++ ...++.. ..
T Consensus 86 ----------------------~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~---~~ 138 (459)
T 2z83_A 86 ----------------------HQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIA---TK 138 (459)
T ss_dssp ------------------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHH---HH
T ss_pred ----------------------CCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHH---HH
Confidence 0123367788888887766652 45788999999999983 3333211 11
Q ss_pred HhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccc
Q 009641 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301 (530)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (530)
... +..+++++|||++..+..+... ..|+......
T Consensus 139 ~~~----------------------------------------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~~--- 173 (459)
T 2z83_A 139 VEL----------------------------------------GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQDE--- 173 (459)
T ss_dssp HHT----------------------------------------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC---
T ss_pred hcc----------------------------------------CCccEEEEEcCCCcchhhhccC--CCCeEEeccc---
Confidence 100 2238999999998776544332 2333221100
Q ss_pred cCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHH
Q 009641 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (530)
Q Consensus 302 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f 381 (530)
.+ ..+...+...+... .+++||||++++.++.+++.|...+ +.+..+||+ +|.++++.|
T Consensus 174 -~~------------~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g---~~v~~lh~~----~R~~~~~~f 232 (459)
T 2z83_A 174 -IP------------DRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAG---KKVIQLNRK----SYDTEYPKC 232 (459)
T ss_dssp -CC------------SSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT---CCEEEESTT----CCCCCGGGS
T ss_pred -CC------------cchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcC---CcEEecCHH----HHHHHHhhc
Confidence 00 00011112223333 6799999999999999999999875 889999985 688899999
Q ss_pred hcCCccEEEEecccccCCCCCCCCEEEE--------------------ccCCCChhHHHHHHhhhhcCCC-CccEEEEee
Q 009641 382 REGKIQVLVSSDAMTRGMDVEGVNNVVN--------------------YDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLH 440 (530)
Q Consensus 382 ~~g~~~iLVaT~~~~~GiDip~~~~VI~--------------------~~~p~s~~~y~Qr~GR~gR~g~-~g~~i~~~~ 440 (530)
++|+.+|||||+++++|||+|+ ++||+ |+.|.|..+|+||+||+||.|. +|.+++|+.
T Consensus 233 ~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~ 311 (459)
T 2z83_A 233 KNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGG 311 (459)
T ss_dssp SSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEc
Confidence 9999999999999999999999 99999 7799999999999999999997 899999998
Q ss_pred cc
Q 009641 441 KD 442 (530)
Q Consensus 441 ~~ 442 (530)
+.
T Consensus 312 ~~ 313 (459)
T 2z83_A 312 AT 313 (459)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.2e-36 Score=306.55 Aligned_cols=269 Identities=13% Similarity=0.122 Sum_probs=190.4
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (530)
+++++++||||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+. ++.+....|.....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~---~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~~------ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK---KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQSE------ 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcccc------
Confidence 7899999999999999999999976655 34589999999999999988775 45566555542110
Q ss_pred hhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccC
Q 009641 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228 (530)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~ 228 (530)
...+..+.++|.+.+...+.. ...+.++++||+||||++ ...+......+......
T Consensus 67 --------------------~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~- 122 (431)
T 2v6i_A 67 --------------------RTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM- 122 (431)
T ss_dssp ----------------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT-
T ss_pred --------------------CCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC-
Confidence 012336777888888766655 345778999999999997 43333333333322110
Q ss_pred cccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccce
Q 009641 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308 (530)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (530)
+..+++++|||+++....+... ..++.....
T Consensus 123 ------------------------------------~~~~~l~~SAT~~~~~~~~~~~--~~~i~~~~~----------- 153 (431)
T 2v6i_A 123 ------------------------------------GDAGAIFMTATPPGTTEAFPPS--NSPIIDEET----------- 153 (431)
T ss_dssp ------------------------------------TSCEEEEEESSCTTCCCSSCCC--SSCCEEEEC-----------
T ss_pred ------------------------------------CCCcEEEEeCCCCcchhhhcCC--CCceeeccc-----------
Confidence 1238999999998765443321 111111000
Q ss_pred eeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccE
Q 009641 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388 (530)
Q Consensus 309 ~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~i 388 (530)
.. ...+...+...+.. ..+++||||++++.++.+++.|...+ +.+..+||+ +|.++++.|++|+.+|
T Consensus 154 ----~~-~~~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~---~~v~~lhg~----~r~~~~~~f~~g~~~v 220 (431)
T 2v6i_A 154 ----RI-PDKAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAG---KKVLYLNRK----TFESEYPKCKSEKWDF 220 (431)
T ss_dssp ----CC-CSSCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTT---CCEEEESTT----THHHHTTHHHHSCCSE
T ss_pred ----cC-CHHHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcC---CeEEEeCCc----cHHHHHHhhcCCCCeE
Confidence 00 01111122233433 35789999999999999999999864 889999997 4788999999999999
Q ss_pred EEEecccccCCCCCCCCE-----------------EEEccCCCChhHHHHHHhhhhcCCCC-ccEEEEe
Q 009641 389 LVSSDAMTRGMDVEGVNN-----------------VVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLL 439 (530)
Q Consensus 389 LVaT~~~~~GiDip~~~~-----------------VI~~~~p~s~~~y~Qr~GR~gR~g~~-g~~i~~~ 439 (530)
||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+||.|.. |.+++|.
T Consensus 221 LVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 221 VITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999 655 57888999999999999999999854 5666665
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.7e-36 Score=319.40 Aligned_cols=308 Identities=17% Similarity=0.157 Sum_probs=185.1
Q ss_pred ccchhhHHHHHHhcCCCCCC-CcEEEECCCCchHHHHHHHHHHHHhhhc-----CCCcccEEEEcCcHHHHHHHH-HHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVK-DVFA 122 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~-~~~li~apTGsGKT~~~~~~~l~~l~~~-----~~~~~~~lil~Pt~~L~~Q~~-~~l~ 122 (530)
.|+++|.+|++.++..+..+ +++++++|||||||++++..+...+..+ ...+.++|||+||++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 79999999999877544445 5699999999999999655444433332 114568999999999999998 7776
Q ss_pred HhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcC---CCCCCCCcc
Q 009641 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT---RGFTLEHLC 199 (530)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~---~~~~~~~~~ 199 (530)
.+. ..+..+.++. .....+|+|+||++|....... ..+....++
T Consensus 258 ~~~----~~~~~~~~~~-----------------------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~ 304 (590)
T 3h1t_A 258 PFG----DARHKIEGGK-----------------------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFD 304 (590)
T ss_dssp TTC----SSEEECCC-------------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCS
T ss_pred hcc----hhhhhhhccC-----------------------------CCCCCcEEEEEhhhhccccccccccccCCCCccC
Confidence 653 3333333321 1245699999999998876421 224566799
Q ss_pred EEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCC
Q 009641 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (530)
Q Consensus 200 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 279 (530)
+||+||||++.... ...+..++..++. .+.+++|||+...
T Consensus 305 lvIiDEaH~~~~~~-~~~~~~il~~~~~---------------------------------------~~~l~lTATP~~~ 344 (590)
T 3h1t_A 305 LIIIDECHRGSARD-NSNWREILEYFEP---------------------------------------AFQIGMTATPLRE 344 (590)
T ss_dssp EEEESCCC----------CHHHHHHSTT---------------------------------------SEEEEEESSCSCT
T ss_pred EEEEECCccccccc-hHHHHHHHHhCCc---------------------------------------ceEEEeccccccc
Confidence 99999999986532 1233444444321 1689999998754
Q ss_pred hhhhhhhccCCceE------------------EecCCcc--ccC---cccc-------eeeEeeccC-------CCcHHH
Q 009641 280 PNKLAQLDLHHPLF------------------LTTGETR--YKL---PERL-------ESYKLICES-------KLKPLY 322 (530)
Q Consensus 280 ~~~~~~~~~~~~~~------------------~~~~~~~--~~~---~~~~-------~~~~~~~~~-------~~k~~~ 322 (530)
........+..++. ....... ... .... ......... ..+...
T Consensus 345 ~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 424 (590)
T 3h1t_A 345 DNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDA 424 (590)
T ss_dssp TTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHH
T ss_pred cchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHH
Confidence 33222111121111 1100000 000 0000 000000000 011112
Q ss_pred ----HHHHHHh-cCCCcEEEEcCChHHHHHHHHHHHhcCC-----CcceEEEccccCCHHHHHHHHHHHhcCCcc---EE
Q 009641 323 ----LVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE-----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VL 389 (530)
Q Consensus 323 ----l~~~l~~-~~~~~~iVf~~s~~~~~~l~~~L~~~~~-----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~---iL 389 (530)
+...+.. ...+++||||+++++|+.+++.|...+. .+..+..+||+++. +|.+++++|++|+.+ ||
T Consensus 425 i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~il 503 (590)
T 3h1t_A 425 FAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVIL 503 (590)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEE
T ss_pred HHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEE
Confidence 2223333 3457999999999999999999986531 11237788998764 799999999998766 88
Q ss_pred EEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCC
Q 009641 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (530)
Q Consensus 390 VaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~ 431 (530)
|||+++++|+|+|++++||++++|.+...|+||+||+||.+.
T Consensus 504 vtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 504 TTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 999999999999999999999999999999999999999875
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=8.4e-36 Score=327.29 Aligned_cols=327 Identities=17% Similarity=0.146 Sum_probs=218.7
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
.+|+|+|.+++..++... +.++++.++||+|||++++..+...+..+ ...++|||||+ .|+.||.+++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~--~~~~LLad~tGlGKTi~Ai~~i~~l~~~g--~~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRH--APRVLLADEVGLGKTIEAGMILHQQLLSG--AAERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSS--SCEEEECCCTTSCHHHHHHHHHHHHHHTS--SCCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHhc--CCCEEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 379999999998877532 56799999999999999887776666543 23479999999 99999999997654
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
++++..+.|+....... . . .......+|+|+|++.+.........+....+++||+||||+
T Consensus 224 ~l~v~v~~~~~~~~~~~-~-~-----------------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQH-D-A-----------------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp CCCCEECCHHHHHHHHH-T-T-----------------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred CCCEEEEccchhhhhhh-h-c-----------------ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh
Confidence 56777766544221110 0 0 011134699999999886432221113345799999999999
Q ss_pred hhhHhhhh-HHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCC-hhh----
Q 009641 209 LLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD-PNK---- 282 (530)
Q Consensus 209 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~---- 282 (530)
+...+... .....+..+..... ..+++|||+..+ ...
T Consensus 285 ~kn~~~~~s~~~~~l~~L~~~~~-------------------------------------~~L~LTATPi~n~~~el~sl 327 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQLAEHVP-------------------------------------GVLLLTATPEQLGMESHFAR 327 (968)
T ss_dssp CCCBTTBCCHHHHHHHHHHTTCS-------------------------------------SEEESCSSCSSSCSSCTHHH
T ss_pred hcCCCCcchHHHHHHHHHhhcCC-------------------------------------cEEEEEcCCccCCHHHHHHH
Confidence 86433211 11112222211111 123333333210 000
Q ss_pred -------------------------------------------------------------------------------h
Q 009641 283 -------------------------------------------------------------------------------L 283 (530)
Q Consensus 283 -------------------------------------------------------------------------------~ 283 (530)
+
T Consensus 328 l~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~l 407 (968)
T 3dmq_A 328 LRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSML 407 (968)
T ss_dssp HHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHH
T ss_pred HHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHH
Confidence 0
Q ss_pred hhhccCCceEEecCC-ccccCcccc-e---------------------------------------------eeEeeccC
Q 009641 284 AQLDLHHPLFLTTGE-TRYKLPERL-E---------------------------------------------SYKLICES 316 (530)
Q Consensus 284 ~~~~~~~~~~~~~~~-~~~~~~~~~-~---------------------------------------------~~~~~~~~ 316 (530)
..........+.... .....+... . ........
T Consensus 408 ld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~ 487 (968)
T 3dmq_A 408 MDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNF 487 (968)
T ss_dssp GGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTT
T ss_pred HHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCc
Confidence 000000000000000 000000000 0 00012234
Q ss_pred CCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCC--ccEEEEecc
Q 009641 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDA 394 (530)
Q Consensus 317 ~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~iLVaT~~ 394 (530)
..|...+..++....+.++||||+++..++.+++.|... .++++..+||+|++.+|..+++.|++|+ .+|||||++
T Consensus 488 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v 565 (968)
T 3dmq_A 488 DPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI 565 (968)
T ss_dssp SHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch
Confidence 567888888888888899999999999999999999853 1388999999999999999999999998 999999999
Q ss_pred cccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeec
Q 009641 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441 (530)
Q Consensus 395 ~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~ 441 (530)
+++|+|+|++++||++|+|+++..|.||+||+||.|+.|.++++...
T Consensus 566 ~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 566 GSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp TTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred hhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEec
Confidence 99999999999999999999999999999999999999876666443
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.6e-35 Score=306.97 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=203.2
Q ss_pred CCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHH
Q 009641 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (530)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~ 146 (530)
+.+++++++||||||||. +++..+...+ .++|++||++||.|+++.+++. ++++..++|+......
T Consensus 153 l~rk~vlv~apTGSGKT~----~al~~l~~~~----~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~-- 218 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTY----HAIQKYFSAK----SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ-- 218 (677)
T ss_dssp SCCEEEEEECCTTSSHHH----HHHHHHHHSS----SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS--
T ss_pred cCCCEEEEEcCCCCCHHH----HHHHHHHhcC----CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec--
Confidence 468899999999999998 3445554432 4699999999999999999886 7889999988653100
Q ss_pred HHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcc
Q 009641 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (530)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~ 226 (530)
. -....+++++|++.+. ....+++|||||||++.+.+++..+..++..++
T Consensus 219 ----T-----------------pGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~ 268 (677)
T 3rc3_A 219 ----P-----------------NGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC 268 (677)
T ss_dssp ----T-----------------TCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC
T ss_pred ----C-----------------CCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccC
Confidence 0 0012578888875431 235689999999999998888888887776654
Q ss_pred cCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCccc
Q 009641 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 306 (530)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (530)
. +.++++++|||.+ .+..+.... .....+........
T Consensus 269 ~-------------------------------------~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~~~---- 305 (677)
T 3rc3_A 269 A-------------------------------------EEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKRLTP---- 305 (677)
T ss_dssp E-------------------------------------EEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCCSSC----
T ss_pred c-------------------------------------cceEEEeccchHH-HHHHHHHhc-CCceEEEEeeecch----
Confidence 2 2347788889852 233333222 22222211111000
Q ss_pred ceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhc--C
Q 009641 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--G 384 (530)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g 384 (530)
.......-. .+... ..+.+|||++++.++.+++.|...+ +.+..+||+|++.+|.++++.|++ |
T Consensus 306 ---l~~~~~~l~-------~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g---~~v~~lHG~L~~~~R~~~~~~F~~~~g 371 (677)
T 3rc3_A 306 ---ISVLDHALE-------SLDNL-RPGDCIVCFSKNDIYSVSRQIEIRG---LESAVIYGSLPPGTKLAQAKKFNDPND 371 (677)
T ss_dssp ---EEECSSCCC-------SGGGC-CTTEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHCTTS
T ss_pred ---HHHHHHHHH-------HHHhc-CCCCEEEEcCHHHHHHHHHHHHhcC---CCeeeeeccCCHHHHHHHHHHHHccCC
Confidence 000000000 11122 3455899999999999999999865 889999999999999999999999 8
Q ss_pred CccEEEEecccccCCCCCCCCEEEEccC--------------CCChhHHHHHHhhhhcCCCC---ccEEEEeecchHHHH
Q 009641 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDK--------------PAYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVKRF 447 (530)
Q Consensus 385 ~~~iLVaT~~~~~GiDip~~~~VI~~~~--------------p~s~~~y~Qr~GR~gR~g~~---g~~i~~~~~~~~~~~ 447 (530)
..+|||||+++++|||+ ++++||+++. |.+..+|+||+||+||.|.. |.++ ++.+++...+
T Consensus 372 ~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~-~l~~~d~~~~ 449 (677)
T 3rc3_A 372 PCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVT-TMNHEDLSLL 449 (677)
T ss_dssp SCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEE-ESSTTHHHHH
T ss_pred CeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEE-EEecchHHHH
Confidence 89999999999999999 8999999999 77899999999999999975 4444 4445565666
Q ss_pred HHHHHHh
Q 009641 448 KKLLQKA 454 (530)
Q Consensus 448 ~~~~~~~ 454 (530)
.++....
T Consensus 450 ~~~~~~~ 456 (677)
T 3rc3_A 450 KEILKRP 456 (677)
T ss_dssp HHHHHSC
T ss_pred HHHHhcC
Confidence 6665543
No 54
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.7e-33 Score=285.55 Aligned_cols=386 Identities=18% Similarity=0.200 Sum_probs=243.8
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|. .|+++|.-..-.+. .|+ |+.+.||+|||+++.+|++-+... |..+.|++||..||.|-++++..+.
T Consensus 72 lg~-r~~dvQligg~~L~----~G~--iaEM~TGEGKTLva~lp~~lnAL~----G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALH----EGK--VAEMKTGEGKTLAATMPIYLNALI----GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHH----TTC--EEECCTTSCHHHHTHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHh----CCC--hhhccCCCCccHHHHHHHHHHHhc----CCceEEEeccHHHHHhHHHHHHHHH
Confidence 787 89999987754432 344 999999999999999998755444 3479999999999999999999999
Q ss_pred cccCceEEEeecCCc-------hHHHH-HHHhh----cCccccC-----------------ccCCchhHHHhhcCCCcEE
Q 009641 126 PAVGLSVGLAVGQSS-------IADEI-SELIK----RPKLEAG-----------------ICYDPEDVLQELQSAVDIL 176 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~-------~~~~~-~~~~~----~~~~~~~-----------------~~~~~~~~~~~~~~~~~Il 176 (530)
.++|++++++..... ..+-. ..... -|....+ ...++.+ +.....+||+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCCCE
Confidence 999999999887310 00000 00000 0000000 0011111 1222357999
Q ss_pred EeCChHH-HHHHhcC-----CCCCCCCccEEEEechhHhhhH-h---------------hhhHHHHHHhhcccCcc----
Q 009641 177 VATPGRL-MDHINAT-----RGFTLEHLCYLVVDETDRLLRE-A---------------YQAWLPTVLQLTRSDNE---- 230 (530)
Q Consensus 177 i~Tp~~l-~~~l~~~-----~~~~~~~~~~lViDEah~~~~~-~---------------~~~~~~~i~~~~~~~~~---- 230 (530)
++|..-| ++.|+.. .....+.+.+.||||+|.++=+ . ....+..+...+.....
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 9999766 4455432 1123466899999999997421 1 11222223222221100
Q ss_pred -----------------------ccccccc-cc---ccccccchhhhhc-----------------ccc-------cc--
Q 009641 231 -----------------------NRFSDAS-TF---LPSAFGSLKTIRR-----------------CGV-------ER-- 257 (530)
Q Consensus 231 -----------------------~~~~~~~-~~---~~~~~~~~~~~~~-----------------~~~-------~~-- 257 (530)
+.+.... .. ...++.....+.+ +|. ..
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 0000000 00 0000000000000 000 00
Q ss_pred --------C-----------------CCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCccccCcccceeeEe
Q 009641 258 --------G-----------------FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 312 (530)
Q Consensus 258 --------~-----------------~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (530)
+ +...+ .+...||+|.......+...+..+.+.++.... ....-....+
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y---~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp---~~R~d~~d~v 452 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMY---EKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKP---MIRKDHDDLV 452 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTS---SEEEEEESSCGGGHHHHHHHSCCCEEECCCSSC---CCCEECCCEE
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHh---hHHeEECCCCchHHHHHHHHhCCeEEEECCCCC---cceeecCcEE
Confidence 0 00000 136789999987777676666444333322211 1111122234
Q ss_pred eccCCCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEE
Q 009641 313 ICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (530)
Q Consensus 313 ~~~~~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLV 390 (530)
......|...+...+... .+.++||||+|++.++.+++.|...+ +++..+||+..+.+|..+.+.|+.| .|+|
T Consensus 453 y~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G---i~~~vLhgkq~~rE~~ii~~ag~~g--~VtV 527 (822)
T 3jux_A 453 FRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG---IPHQVLNAKYHEKEAEIVAKAGQKG--MVTI 527 (822)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT---CCCEEECSCHHHHHHHHHHHHHSTT--CEEE
T ss_pred EecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEeeCCchHHHHHHHHhCCCCC--eEEE
Confidence 455667888888877643 57899999999999999999999876 8889999997666666666666666 6999
Q ss_pred EecccccCCCCC--------CCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchH-------HHHHHHHHHhc
Q 009641 391 SSDAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 455 (530)
Q Consensus 391 aT~~~~~GiDip--------~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~-------~~~~~~~~~~~ 455 (530)
||++++||+||+ +..+||+++.|.+.+.|+||+||+||.|.+|.+++|++.+|. +.+..+++.++
T Consensus 528 ATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~ 607 (822)
T 3jux_A 528 ATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILK 607 (822)
T ss_dssp EETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSS
T ss_pred EcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcC
Confidence 999999999998 567999999999999999999999999999999999999872 34566666654
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.3e-34 Score=295.65 Aligned_cols=314 Identities=16% Similarity=0.221 Sum_probs=211.2
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
.|+|||.+++..+......++++++.++||+|||++++..+. .+.... ...++|||||+ .|+.||.++++++++ +
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~~-~~~~~LIv~P~-~l~~qw~~e~~~~~~--~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKEN-ELTPSLVICPL-SVLKNWEEELSKFAP--H 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHTT-CCSSEEEEECS-TTHHHHHHHHHHHCT--T
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhcC-CCCCEEEEccH-HHHHHHHHHHHHHCC--C
Confidence 799999999876643223467899999999999998755444 443322 34579999995 689999999999875 4
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
.++..++|+... .....++|+|+||+++..... +....+++||+||||++
T Consensus 112 ~~v~~~~g~~~~--------------------------~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~ 161 (500)
T 1z63_A 112 LRFAVFHEDRSK--------------------------IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNI 161 (500)
T ss_dssp SCEEECSSSTTS--------------------------CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGG
T ss_pred ceEEEEecCchh--------------------------ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCcccc
Confidence 567777776421 011346999999999865432 22336899999999998
Q ss_pred hhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCC-hhhhhh---
Q 009641 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD-PNKLAQ--- 285 (530)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~~~~--- 285 (530)
.+... .....+..++ ....+++|||+..+ ..++..
T Consensus 162 kn~~~--~~~~~l~~l~---------------------------------------~~~~l~LTaTP~~n~~~el~~ll~ 200 (500)
T 1z63_A 162 KNPQT--KIFKAVKELK---------------------------------------SKYRIALTGTPIENKVDDLWSIMT 200 (500)
T ss_dssp SCTTS--HHHHHHHTSC---------------------------------------EEEEEEECSSCSTTCHHHHHHHHH
T ss_pred CCHhH--HHHHHHHhhc---------------------------------------cCcEEEEecCCCCCCHHHHHHHHH
Confidence 55421 1222222221 11568888888543 111100
Q ss_pred ---------------------------------hccCCceEEecCCc----cccCcccceeeEe----------------
Q 009641 286 ---------------------------------LDLHHPLFLTTGET----RYKLPERLESYKL---------------- 312 (530)
Q Consensus 286 ---------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------------- 312 (530)
..+ .+..+..... ...++........
T Consensus 201 ~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~ 279 (500)
T 1z63_A 201 FLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVE 279 (500)
T ss_dssp HHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHH
T ss_pred HhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHH
Confidence 000 1111111000 0011111100000
Q ss_pred ----------------------------------------eccCCCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHH
Q 009641 313 ----------------------------------------ICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCT 350 (530)
Q Consensus 313 ----------------------------------------~~~~~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~ 350 (530)
......|...+..++... .+.++||||+++..++.+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~ 359 (500)
T 1z63_A 280 NLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 359 (500)
T ss_dssp HHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHH
Confidence 011234555666666543 57799999999999999999
Q ss_pred HHHhc-CCCcceEEEccccCCHHHHHHHHHHHhcC-Ccc-EEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhh
Q 009641 351 LLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (530)
Q Consensus 351 ~L~~~-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~-iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~g 427 (530)
.|... + +.+..+||+++..+|.++++.|++| ..+ +|++|+++++|+|+|.+++||++|+|+|+..|.||+||++
T Consensus 360 ~l~~~~~---~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~ 436 (500)
T 1z63_A 360 IIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVY 436 (500)
T ss_dssp HHHHHHT---CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTT
T ss_pred HHHHhhC---CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHH
Confidence 99874 4 7788999999999999999999998 454 7999999999999999999999999999999999999999
Q ss_pred cCCCCccE--EEEeecch
Q 009641 428 RAGQLGRC--FTLLHKDE 443 (530)
Q Consensus 428 R~g~~g~~--i~~~~~~~ 443 (530)
|.|+.+.+ +.++..+.
T Consensus 437 R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 437 RIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp TTTTTSCEEEEEEEETTS
T ss_pred HcCCCCeeEEEEEEeCCC
Confidence 99988765 44566553
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=7.8e-34 Score=264.38 Aligned_cols=212 Identities=28% Similarity=0.413 Sum_probs=183.3
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
.|....+|+++ ++++.+.+.+.++||..|+++|.++++.++. |+|+++.||||||||++|++|++..+..
T Consensus 24 ~p~~~~~f~~~------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 24 CPKPVLNFYEA------NFPANVMDVIARQNFTEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp CCCCCSSTTTT------TCCHHHHHHHHTTTCCSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccCCHhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 45666778888 4999999999999999999999999988764 8999999999999999999999998875
Q ss_pred cC----CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC
Q 009641 97 RA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (530)
Q Consensus 97 ~~----~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (530)
.. ..+.++||++||++|+.|+++.+++++...++++..++|+.....+... +..+
T Consensus 94 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~ 152 (242)
T 3fe2_A 94 QPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD---------------------LERG 152 (242)
T ss_dssp SCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH---------------------HHHC
T ss_pred ccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---------------------hcCC
Confidence 32 2467899999999999999999999998889999999999887666433 2346
Q ss_pred CcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhc
Q 009641 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (530)
Q Consensus 173 ~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (530)
++|+|+||+++.+++.+ ....+.++++||+||||++.+.+|...+..++..++.
T Consensus 153 ~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~------------------------- 206 (242)
T 3fe2_A 153 VEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP------------------------- 206 (242)
T ss_dssp CSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS-------------------------
T ss_pred CCEEEECHHHHHHHHHc-CCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc-------------------------
Confidence 79999999999999987 4567889999999999999999999999988876542
Q ss_pred cccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCC
Q 009641 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (530)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (530)
..|++++|||+++.+..+...++.+|+.+..+.
T Consensus 207 -------------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 207 -------------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp -------------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred -------------cceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 238999999999999999999999999887764
No 57
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=259.64 Aligned_cols=207 Identities=32% Similarity=0.507 Sum_probs=178.2
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC
Q 009641 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (530)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~ 99 (530)
...+|+++ ++++.+.++|+++||..|+++|.++++.++. ++++++.||||||||++|++|+++.+....
T Consensus 41 ~~~~f~~l------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~- 109 (249)
T 3ber_A 41 ETKTFKDL------GVTDVLCEACDQLGWTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETP- 109 (249)
T ss_dssp HHCCTGGG------TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSC-
T ss_pred ccCCHHHc------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCC-
Confidence 34567777 4999999999999999999999999988774 799999999999999999999999887753
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
.+.++||++||++|+.|+++.+++++...++++..++|+.....+... +..+++|+|+|
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~I~v~T 168 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---------------------LAKKPHIIIAT 168 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---------------------HHTCCSEEEEC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---------------------hcCCCCEEEEC
Confidence 456899999999999999999999988889999999998876554322 33568999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCC
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (530)
|+++.+.+.+.+.+.+.++++||+||||++.+.++...+..++..++.
T Consensus 169 p~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~-------------------------------- 216 (249)
T 3ber_A 169 PGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR-------------------------------- 216 (249)
T ss_dssp HHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS--------------------------------
T ss_pred HHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC--------------------------------
Confidence 999999988755667889999999999999999998888888876542
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhhccCCceEEec
Q 009641 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (530)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 296 (530)
..+++++|||++..+..+...++.+|..+..
T Consensus 217 ------~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 217 ------DRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp ------SSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ------CCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 2278999999999999999999999987754
No 58
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=262.41 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=172.2
Q ss_pred cccCCccC-CCCCCcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHH
Q 009641 6 KKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84 (530)
Q Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~ 84 (530)
...+|..| |+........|+++. +.+++.+.++|+++||.+|+++|.++++.++. ++|++++||||||||+
T Consensus 35 ~~~~~~~p~~~~~~~~~~~f~~l~----~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~ 106 (262)
T 3ly5_A 35 ESEVPSLPLGLTGAFEDTSFASLC----NLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTL 106 (262)
T ss_dssp -----------CCBSGGGCC---------CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHH
T ss_pred cccCCCCccccccccccCChhHhc----cccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchH
Confidence 33455555 444443333344432 24899999999999999999999999988775 7899999999999999
Q ss_pred HHHHHHHHHhhhcC---CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCC
Q 009641 85 SYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161 (530)
Q Consensus 85 ~~~~~~l~~l~~~~---~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 161 (530)
+|++|+++.+.... ..+.++||++||++|+.|+++.+++++...+..+...+|+.........
T Consensus 107 ~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------- 172 (262)
T 3ly5_A 107 AFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK-------------- 172 (262)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH--------------
T ss_pred HHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH--------------
Confidence 99999999887632 2356899999999999999999999998888999999998876655432
Q ss_pred chhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCccccccccccccc
Q 009641 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241 (530)
Q Consensus 162 ~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 241 (530)
+..+++|+|+||+++..++.....+.+.++++||+||||++.+.+|...+..++..++.
T Consensus 173 -------~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~-------------- 231 (262)
T 3ly5_A 173 -------LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT-------------- 231 (262)
T ss_dssp -------HHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS--------------
T ss_pred -------hcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC--------------
Confidence 23457999999999999988765677889999999999999999999999999887653
Q ss_pred ccccchhhhhccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCc
Q 009641 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291 (530)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 291 (530)
..+++++|||+++.+..+....+..+
T Consensus 232 ------------------------~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 232 ------------------------RRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp ------------------------SSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred ------------------------CCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 22799999999999999888777644
No 59
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=5.7e-33 Score=265.79 Aligned_cols=207 Identities=21% Similarity=0.305 Sum_probs=174.0
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC
Q 009641 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (530)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~ 99 (530)
...+|+++ +|++.+.++|.++||..|+++|.+|++.++.. .++|++++||||||||++|++|+++.+....
T Consensus 90 ~~~~f~~l------~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~- 160 (300)
T 3fmo_B 90 SVKSFEEL------RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN- 160 (300)
T ss_dssp CCCCSGGG------TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-
T ss_pred CcCCHhhc------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhccC-
Confidence 34567776 49999999999999999999999999988751 1389999999999999999999999987643
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (530)
.++++||++||++||.|+++.++.++... ++.+....|+...... ...+++|+|+
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~IlV~ 216 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIG 216 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh------------------------hcCCCCEEEE
Confidence 56689999999999999999999998765 6888888887653321 1245799999
Q ss_pred CChHHHHHHhcCCCCCCCCccEEEEechhHhhh-HhhhhHHHHHHhhcccCcccccccccccccccccchhhhhcccccc
Q 009641 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (530)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (530)
||++|++++.+.+.+.+.++++|||||||++++ .++...+..++..++.
T Consensus 217 TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~------------------------------ 266 (300)
T 3fmo_B 217 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR------------------------------ 266 (300)
T ss_dssp CHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT------------------------------
T ss_pred CHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC------------------------------
Confidence 999999999775667889999999999999987 6888888888766542
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecC
Q 009641 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (530)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (530)
..|++++|||++..+..+...++.+|..+...
T Consensus 267 --------~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 267 --------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp --------TCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred --------CCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 23899999999999999999999999887654
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=252.84 Aligned_cols=209 Identities=29% Similarity=0.465 Sum_probs=175.9
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC
Q 009641 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (530)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~ 98 (530)
....+|++++ +++.+.+.|.++||..|+++|.++++.++. ++++++.+|||||||++|++|+++.+....
T Consensus 22 ~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~ 91 (236)
T 2pl3_A 22 NEITRFSDFP------LSKKTLKGLQEAQYRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQ 91 (236)
T ss_dssp GGCSBGGGSC------CCHHHHHHHHHTTCCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred cccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhc
Confidence 3455688874 999999999999999999999999988764 899999999999999999999998886521
Q ss_pred ---CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcE
Q 009641 99 ---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (530)
Q Consensus 99 ---~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 175 (530)
..+.++||++||++|+.|+++.+++++...++++..++|+.....+... ..+++|
T Consensus 92 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~i 149 (236)
T 2pl3_A 92 WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER----------------------INNINI 149 (236)
T ss_dssp CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH----------------------HTTCSE
T ss_pred ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh----------------------CCCCCE
Confidence 2456899999999999999999999988888999999998876554322 145799
Q ss_pred EEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhcccc
Q 009641 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (530)
Q Consensus 176 li~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (530)
+|+||+++.+.+.+...+.+.++++||+||||++.+.++...+..++..++.
T Consensus 150 iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~---------------------------- 201 (236)
T 2pl3_A 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK---------------------------- 201 (236)
T ss_dssp EEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT----------------------------
T ss_pred EEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC----------------------------
Confidence 9999999999887754567789999999999999999988888888876542
Q ss_pred ccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecC
Q 009641 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (530)
Q Consensus 256 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (530)
..+++++|||++..+..+....+.+|..+...
T Consensus 202 ----------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 202 ----------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp ----------TSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ----------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 22789999999999999999999999887654
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3e-32 Score=247.53 Aligned_cols=202 Identities=27% Similarity=0.469 Sum_probs=172.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCc
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~ 101 (530)
.+|++++ |++.+.+.|.++||.+|+|+|.++++.++. ++++++.+|||+|||++|++|++..+... ..+
T Consensus 3 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~ 71 (206)
T 1vec_A 3 NEFEDYC------LKRELLMGIFEMGWEKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLK-KDN 71 (206)
T ss_dssp SSGGGSC------CCHHHHHHHHTTTCCSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCS
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhccc-CCC
Confidence 3577774 999999999999999999999999998775 78999999999999999999999887653 245
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
.++||++||++|+.|+++.++++.... ++.+...+|+.....+... +..+++|+|+||
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~i~v~T~ 130 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---------------------LDDTVHVVIATP 130 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---------------------TTSCCSEEEECH
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---------------------cCCCCCEEEeCH
Confidence 689999999999999999999998776 7889999998876655332 335679999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (530)
+++.+.+.+ ....+.+++++|+||||++.+.++...+..++..++.
T Consensus 131 ~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~--------------------------------- 176 (206)
T 1vec_A 131 GRILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK--------------------------------- 176 (206)
T ss_dssp HHHHHHHHT-TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT---------------------------------
T ss_pred HHHHHHHHc-CCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc---------------------------------
Confidence 999998886 4566889999999999999998888888888876542
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhhccCCceEE
Q 009641 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294 (530)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 294 (530)
..+++++|||++..+..+...++.+|..+
T Consensus 177 -----~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 177 -----NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp -----TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred -----cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 22789999999998888888888888754
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-32 Score=251.98 Aligned_cols=207 Identities=23% Similarity=0.358 Sum_probs=173.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCc
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~ 101 (530)
.+|++++ +++.+.++|.++||.+|+++|.++++.++. ++++++.+|||||||++|++|+++.+.... .+
T Consensus 4 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-~~ 72 (219)
T 1q0u_A 4 TQFTRFP------FQPFIIEAIKTLRFYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPER-AE 72 (219)
T ss_dssp CCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTS-CS
T ss_pred CCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCc-CC
Confidence 4577774 999999999999999999999999988774 789999999999999999999999886532 45
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhcccc----CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 177 (530)
.++||++||++|+.|+++.++++.... ++.+..++|+....... ..+..+++|+|
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~Iiv 131 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---------------------EKLNVQPHIVI 131 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---------------------CCCSSCCSEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---------------------HHcCCCCCEEE
Confidence 689999999999999999999998766 68888888887644321 12234679999
Q ss_pred eCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhcccccc
Q 009641 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (530)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (530)
+||+++.+.+.+ ....+.+++++|+||||++.+.++...+..++..++.
T Consensus 132 ~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------------------------------ 180 (219)
T 1q0u_A 132 GTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK------------------------------ 180 (219)
T ss_dssp ECHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT------------------------------
T ss_pred eCHHHHHHHHHc-CCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCc------------------------------
Confidence 999999999886 4567888999999999999998888888888876542
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCc
Q 009641 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (530)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (530)
..+++++|||++..+..+...++.+|..+.....
T Consensus 181 --------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 181 --------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp --------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred --------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 2379999999999999999999999988766543
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.6e-32 Score=254.55 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=168.8
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC
Q 009641 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (530)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~ 98 (530)
....+|++++ |++.+.++|.++||..|+++|.++++.++. ++|+++.+|||||||++|++|+++.+...
T Consensus 27 ~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~- 95 (237)
T 3bor_A 27 EIVDNFDDMN------LKESLLRGIYAYGFEKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIE- 95 (237)
T ss_dssp CCCCSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-
T ss_pred CccCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhc-
Confidence 3456688884 999999999999999999999999988774 78999999999999999999999987653
Q ss_pred CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEE
Q 009641 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILV 177 (530)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili 177 (530)
..+.++||++||++|+.|+++.+++++...++.+....|+.....+... +. ..++|+|
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------l~~~~~~Ilv 154 (237)
T 3bor_A 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQK---------------------LQAEAPHIVV 154 (237)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------------------------CCCSEEE
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHH---------------------HhcCCCCEEE
Confidence 2456899999999999999999999988888889888888765444322 22 2379999
Q ss_pred eCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhcccccc
Q 009641 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (530)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (530)
+||+++.+.+.+ ....+..+++||+||||++.+.++...+..++..++.
T Consensus 155 ~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------------------------------ 203 (237)
T 3bor_A 155 GTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT------------------------------ 203 (237)
T ss_dssp ECHHHHHHHHHT-TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT------------------------------
T ss_pred ECHHHHHHHHHh-CCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCC------------------------------
Confidence 999999999886 4566888999999999999998888888888776532
Q ss_pred CCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecC
Q 009641 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (530)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (530)
..+++++|||++..+..+...++.+|..+..+
T Consensus 204 --------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 204 --------SIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp --------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred --------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 23789999999999999999899888877543
No 64
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.3e-32 Score=251.36 Aligned_cols=204 Identities=22% Similarity=0.330 Sum_probs=171.6
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCC
Q 009641 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (530)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~ 100 (530)
..+|+++ +|++.+.++|+++||..|+++|.++++.++. ++|+++.+|||+|||++|++|++..+.... .
T Consensus 23 ~~~f~~l------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-~ 91 (230)
T 2oxc_A 23 PADFESL------LLSRPVLEGLRAAGFERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLEN-L 91 (230)
T ss_dssp -CCGGGG------TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTS-C
T ss_pred CCCHhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcC-C
Confidence 3457777 4999999999999999999999999988764 789999999999999999999999886532 4
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
+.++||++||++|+.|+++.+++++... ++++..++|+.....+... ..+++|+|+|
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~Iiv~T 149 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR----------------------LKKCHIAVGS 149 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH----------------------TTSCSEEEEC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh----------------------ccCCCEEEEC
Confidence 5689999999999999999999998665 7899999998876554322 2457999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHhhhHh-hhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccC
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (530)
|+++.+++.. ..+.+.++++||+||||++.+.+ |...+..++..++.
T Consensus 150 p~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~------------------------------- 197 (230)
T 2oxc_A 150 PGRIKQLIEL-DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA------------------------------- 197 (230)
T ss_dssp HHHHHHHHHT-TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS-------------------------------
T ss_pred HHHHHHHHhc-CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC-------------------------------
Confidence 9999999876 45677889999999999999887 88888888876542
Q ss_pred CCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEec
Q 009641 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (530)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 296 (530)
..+++++|||++..+..+...++.+|..+..
T Consensus 198 -------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 198 -------SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp -------SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred -------CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 2278999999998888888888888877654
No 65
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=253.05 Aligned_cols=207 Identities=30% Similarity=0.436 Sum_probs=168.5
Q ss_pred CcccCCCCC-CCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 18 PVDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
|....+|++ . ++++.+.++|.++||.+|+++|.++++.++. ++|+++.||||||||++|++|++..+..
T Consensus 15 p~p~~~f~~~~------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~ 84 (228)
T 3iuy_A 15 PKPTCRFKDAF------QQYPDLLKSIIRVGILKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDS 84 (228)
T ss_dssp CCCCCSHHHHH------TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC-
T ss_pred CCChhhHhhhh------ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 445556666 4 4999999999999999999999999988764 8999999999999999999999988764
Q ss_pred c-----CCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 009641 97 R-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (530)
Q Consensus 97 ~-----~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (530)
. ...+.++||++||++|+.|+++.++++. ..++++..++|+.....+.. .+..
T Consensus 85 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 142 (228)
T 3iuy_A 85 QPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIE---------------------DISK 142 (228)
T ss_dssp --------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHH---------------------HHHS
T ss_pred ccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHH---------------------HhcC
Confidence 2 1256789999999999999999999986 34788888888876544332 2346
Q ss_pred CCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhh
Q 009641 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (530)
Q Consensus 172 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (530)
+++|+|+||+++.+++.. ....+.++++||+||||++.+.++...+..++..++.
T Consensus 143 ~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~------------------------ 197 (228)
T 3iuy_A 143 GVDIIIATPGRLNDLQMN-NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP------------------------ 197 (228)
T ss_dssp CCSEEEECHHHHHHHHHT-TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCS------------------------
T ss_pred CCCEEEECHHHHHHHHHc-CCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCc------------------------
Confidence 689999999999998876 5567889999999999999999999999988876542
Q ss_pred ccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEe
Q 009641 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (530)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 295 (530)
..+++++|||+++.+..+...++.+|..+.
T Consensus 198 --------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 198 --------------DRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp --------------SCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred --------------CCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 238999999999999999999998887653
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-31 Score=245.09 Aligned_cols=204 Identities=25% Similarity=0.367 Sum_probs=170.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCc
Q 009641 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (530)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~ 101 (530)
..|+++ +|++.+.++|.++||..|+++|.++++.++. ++++++.+|||+|||++|++|++..+.... .+
T Consensus 14 ~~f~~~------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~-~~ 82 (220)
T 1t6n_A 14 SGFRDF------LLKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVT-GQ 82 (220)
T ss_dssp CCSTTS------CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCT-TC
T ss_pred CCHhhc------CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccC-CC
Confidence 457777 4999999999999999999999999988875 789999999999999999999998876532 44
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
.++||++||++|+.|+++.++++.... ++++..++|+.....+...+. ...++|+|+||
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--------------------~~~~~i~v~T~ 142 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTP 142 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH--------------------HSCCSEEEECH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh--------------------cCCCCEEEeCH
Confidence 589999999999999999999998776 789999999987665543322 23569999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhh-HhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (530)
+++.+.+.+ ....+.+++++|+||||++.+ .++...+..++...+.
T Consensus 143 ~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~-------------------------------- 189 (220)
T 1t6n_A 143 GRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH-------------------------------- 189 (220)
T ss_dssp HHHHHHHHT-TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS--------------------------------
T ss_pred HHHHHHHHh-CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC--------------------------------
Confidence 999999887 456788999999999999986 5777777777765432
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhhccCCceEEe
Q 009641 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (530)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 295 (530)
..+++++|||++..+..+...++.+|..+.
T Consensus 190 ------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 190 ------EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ------SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred ------cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 237999999999999999998998887654
No 67
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.5e-32 Score=256.16 Aligned_cols=214 Identities=27% Similarity=0.430 Sum_probs=178.0
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC-
Q 009641 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA- 98 (530)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~- 98 (530)
...+|++++ |++.+.++|.++||..|+++|.++++.++. ++|+++.+|||||||++|++|++..+....
T Consensus 21 ~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~ 90 (253)
T 1wrb_A 21 VIENFDELK------LDPTIRNNILLASYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDL 90 (253)
T ss_dssp CCCSSGGGS------CCCSTTTTTTTTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhcc
Confidence 445677774 889999999999999999999999998775 789999999999999999999999886532
Q ss_pred -------CCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 009641 99 -------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (530)
Q Consensus 99 -------~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (530)
..+.++||++||++|+.|+++.+++++...++.+..++|+.....+.. .+..
T Consensus 91 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~ 149 (253)
T 1wrb_A 91 NQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---------------------EVQM 149 (253)
T ss_dssp ------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---------------------HHSS
T ss_pred ccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhCC
Confidence 234689999999999999999999998888899999999887665533 2345
Q ss_pred CCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhh
Q 009641 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (530)
Q Consensus 172 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (530)
+++|+|+||++|.+++.+ ....+.++++||+||||++.+.+|...+..++..+....
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~---------------------- 206 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEK-NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS---------------------- 206 (253)
T ss_dssp CCSEEEECHHHHHHHHHT-TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC----------------------
T ss_pred CCCEEEECHHHHHHHHHc-CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC----------------------
Confidence 689999999999999887 456788999999999999999999998988887532210
Q ss_pred ccccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCc
Q 009641 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (530)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (530)
....+++++|||++..+..+...++.+|..+..+..
T Consensus 207 ------------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 207 ------------GINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp ------------GGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred ------------CCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 012389999999999999999999999988876654
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.98 E-value=1e-31 Score=247.38 Aligned_cols=207 Identities=25% Similarity=0.418 Sum_probs=169.1
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC
Q 009641 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (530)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~ 99 (530)
....|++++ +++.+.+.|.++||..|+++|.++++.++. ++++++.+|||+|||++|++|+++.+....
T Consensus 12 ~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~- 80 (224)
T 1qde_A 12 VVYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSV- 80 (224)
T ss_dssp CCCCGGGGT------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTC-
T ss_pred ccCChhhcC------CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccC-
Confidence 345688884 999999999999999999999999988775 789999999999999999999999886543
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
.+.++||++||++|+.|+++.+++++...++++...+|+.....+... ...++|+|+|
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~iiv~T 138 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG----------------------LRDAQIVVGT 138 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC--------------------------------CTTCSEEEEC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc----------------------CCCCCEEEEC
Confidence 456899999999999999999999988888999999998765544221 1237999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCC
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (530)
|+++.+.+.+ ....+.++++||+||||++.+.++...+..++..++.
T Consensus 139 p~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~-------------------------------- 185 (224)
T 1qde_A 139 PGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP-------------------------------- 185 (224)
T ss_dssp HHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT--------------------------------
T ss_pred HHHHHHHHHh-CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc--------------------------------
Confidence 9999998887 4567889999999999999998888888888776542
Q ss_pred CCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCC
Q 009641 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (530)
Q Consensus 260 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (530)
..+++++|||++..+..+...++.+|..+....
T Consensus 186 ------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 186 ------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp ------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred ------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 237899999999999999999999998876543
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.98 E-value=2.9e-32 Score=254.49 Aligned_cols=220 Identities=27% Similarity=0.464 Sum_probs=174.1
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
.|.+..+|+++. .. .++++.+.++|.++||..|+|+|.++++.++. ++++++.||||||||++|++|++..+..
T Consensus 20 ~p~~~~~f~~l~-~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 20 LPDPIATFQQLD-QE-YKINSRLLQNILDAGFQMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp CCCCCSSHHHHH-HH-HCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred CCCcccCHHHhh-hc-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 345556666651 00 14999999999999999999999999988775 7899999999999999999999999876
Q ss_pred cCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEE
Q 009641 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (530)
Q Consensus 97 ~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 176 (530)
....+.++||++||++|+.|+++.+++++...++.+...+|+....... ......+++|+
T Consensus 94 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~I~ 153 (245)
T 3dkp_A 94 PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKF--------------------GPKSSKKFDIL 153 (245)
T ss_dssp CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTT--------------------STTSCCCCCEE
T ss_pred cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHh--------------------hhhhcCCCCEE
Confidence 5556778999999999999999999999888888888877764322110 01123568999
Q ss_pred EeCChHHHHHHhcCC-CCCCCCccEEEEechhHhhhH---hhhhHHHHHHhhcccCcccccccccccccccccchhhhhc
Q 009641 177 VATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (530)
Q Consensus 177 i~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (530)
|+||+++..++.+.. .+.+.++++||+||||++.++ ++...+..++.....
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~------------------------- 208 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS------------------------- 208 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-------------------------
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC-------------------------
Confidence 999999999997743 467889999999999999885 455555555544321
Q ss_pred cccccCCCCCCCCceeeEEEeEeecCChhhhhhhccCCceEEecCCc
Q 009641 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (530)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (530)
+..+++++|||++..+..+....+.+|+.+..+..
T Consensus 209 ------------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 209 ------------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp ------------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ------------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 22378999999999999999999999998877643
No 70
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=6.9e-31 Score=277.43 Aligned_cols=378 Identities=18% Similarity=0.177 Sum_probs=218.7
Q ss_pred ccchhhHHHHHHhcCCC-----CCCCcEEEECCCCchHHHHHHHHHHHHhhhcCC---CcccEEEEcCcHHHHHHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPG-----LFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVKDVF 121 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~-----~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~---~~~~~lil~Pt~~L~~Q~~~~l 121 (530)
.|+|||.+++..+.... ..+..+|+..+||+|||+.++..+...+..... ...++|||+|+ .|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 79999999998765321 345779999999999999987766655544321 22469999997 8999999999
Q ss_pred HHhccccCceEEEeecCCchHHH--HHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCcc
Q 009641 122 AAIAPAVGLSVGLAVGQSSIADE--ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (530)
Q Consensus 122 ~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~ 199 (530)
.++++. .+.+..++|+...... ...+.... ......+|+|+|++.+...... +....++
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~---------------~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~ 194 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQ---------------GMRIPTPILIISYETFRLHAEV---LHKGKVG 194 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCC---------------SSCCSCCEEEEEHHHHHHHTTT---TTTSCCC
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhc---------------CCCCCCcEEEeeHHHHHhhHHH---hhcCCcc
Confidence 998765 4566666665432211 11111000 0012368999999999765432 3345689
Q ss_pred EEEEechhHhhhHhhhhHHHHHHhhcccCccccccccccccccc---------------ccchhhhhc-c----------
Q 009641 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA---------------FGSLKTIRR-C---------- 253 (530)
Q Consensus 200 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~---------- 253 (530)
+||+||||++.+... .....+..+... .++...++..... ++....+.. +
T Consensus 195 ~vI~DEaH~ikn~~~--~~~~al~~l~~~--~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~ 270 (644)
T 1z3i_X 195 LVICDEGHRLKNSDN--QTYLALNSMNAQ--RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDA 270 (644)
T ss_dssp EEEETTGGGCCTTCH--HHHHHHHHHCCS--EEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHST
T ss_pred EEEEECceecCChhh--HHHHHHHhcccC--cEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCc
Confidence 999999999854321 111222222211 1111111111000 000000000 0
Q ss_pred ------------------------cc--ccCCCCCCCCceeeEEEeEeecCChhhhhhhcc-------------------
Q 009641 254 ------------------------GV--ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL------------------- 288 (530)
Q Consensus 254 ------------------------~~--~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~------------------- 288 (530)
-+ .+.......|..........+++....+.....
T Consensus 271 ~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l 350 (644)
T 1z3i_X 271 DASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSL 350 (644)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHH
Confidence 00 000000111111111111111111000000000
Q ss_pred ----------CCceEEec----CCcc-----ccCcccceeeEeeccCCCcHHHHHHHHHh---cCCCcEEEEcCChHHHH
Q 009641 289 ----------HHPLFLTT----GETR-----YKLPERLESYKLICESKLKPLYLVALLQS---LGEEKCIVFTSSVESTH 346 (530)
Q Consensus 289 ----------~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~~iVf~~s~~~~~ 346 (530)
.+|..+.. .... ...+..............|...+..++.. ..+.++||||+++..++
T Consensus 351 ~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~ 430 (644)
T 1z3i_X 351 SSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLD 430 (644)
T ss_dssp HHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHH
Confidence 00000000 0000 00000000000001123445555555543 35789999999999999
Q ss_pred HHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCcc---EEEEecccccCCCCCCCCEEEEccCCCChhHHHHHH
Q 009641 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (530)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~---iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~ 423 (530)
.+...|...+ +.+..+||+++..+|.+++++|++|... +|++|+++++|+|++++++||+||+|+|+..|.|++
T Consensus 431 ~l~~~l~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~ 507 (644)
T 1z3i_X 431 LFEKLCRNRR---YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAM 507 (644)
T ss_dssp HHHHHHHHHT---CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHH
T ss_pred HHHHHHHHCC---CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHH
Confidence 9999998776 8889999999999999999999998754 899999999999999999999999999999999999
Q ss_pred hhhhcCCCCccEE--EEeecc--hHHHHHHHHHHh
Q 009641 424 GRTARAGQLGRCF--TLLHKD--EVKRFKKLLQKA 454 (530)
Q Consensus 424 GR~gR~g~~g~~i--~~~~~~--~~~~~~~~~~~~ 454 (530)
||++|.|+...+. .|+..+ |...+.....+.
T Consensus 508 gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~ 542 (644)
T 1z3i_X 508 ARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKK 542 (644)
T ss_dssp TTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHH
T ss_pred HhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHH
Confidence 9999999886544 456665 333444444443
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.1e-31 Score=285.46 Aligned_cols=345 Identities=20% Similarity=0.201 Sum_probs=227.2
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
+|+|||.+++..++.....++++|+..+||+|||++++..+...+.... ...++||||| ..|+.||.+++.++++ +
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-~~~~~LIV~P-~sll~qW~~E~~~~~p--~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-QNGPHIIVVP-LSTMPAWLDTFEKWAP--D 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-CCSCEEEECC-TTTHHHHHHHHHHHST--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-CCCCEEEEEC-chHHHHHHHHHHHHCC--C
Confidence 7999999999876644556889999999999999987665544443322 3446999999 6889999999999875 5
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
+++.+++|+............... ..........++|+|+|++.+...... +....+++||+||||++
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~---------~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTN---------PRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSC---------C-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGG
T ss_pred ceEEEEeCCHHHHHHHHHHHhhcc---------ccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhh
Confidence 788888888765544332211000 000001123579999999999765433 11235899999999998
Q ss_pred hhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCCCCCCCceeeEEEeEeecCCh-hhhhh---
Q 009641 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-NKLAQ--- 285 (530)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-~~~~~--- 285 (530)
.+.. ......+..+.. ...+++||||..+- .++..
T Consensus 380 kn~~--s~~~~~l~~l~~---------------------------------------~~rl~LTgTPiqN~l~el~~ll~ 418 (800)
T 3mwy_W 380 KNAE--SSLYESLNSFKV---------------------------------------ANRMLITGTPLQNNIKELAALVN 418 (800)
T ss_dssp CCSS--SHHHHHHTTSEE---------------------------------------EEEEEECSCCCSSCSHHHHHHHH
T ss_pred cCch--hHHHHHHHHhhh---------------------------------------ccEEEeeCCcCCCCHHHHHHHHH
Confidence 4321 122222222211 13455666653221 00000
Q ss_pred hc-----------------------------cCCceEEecCCcc--ccCcccceeeE-----------------------
Q 009641 286 LD-----------------------------LHHPLFLTTGETR--YKLPERLESYK----------------------- 311 (530)
Q Consensus 286 ~~-----------------------------~~~~~~~~~~~~~--~~~~~~~~~~~----------------------- 311 (530)
.. .-.|.++...... ..+|.......
T Consensus 419 fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l 498 (800)
T 3mwy_W 419 FLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSAL 498 (800)
T ss_dssp HHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC--
T ss_pred HhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0001110000000 00000000000
Q ss_pred ---------------------------------------------------eeccCCCcHHHHHHHHHhc--CCCcEEEE
Q 009641 312 ---------------------------------------------------LICESKLKPLYLVALLQSL--GEEKCIVF 338 (530)
Q Consensus 312 ---------------------------------------------------~~~~~~~k~~~l~~~l~~~--~~~~~iVf 338 (530)
.......|...+..++... .+.++|||
T Consensus 499 ~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIF 578 (800)
T 3mwy_W 499 TAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIF 578 (800)
T ss_dssp --------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEE
T ss_pred hhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEE
Confidence 0011344666677777654 56799999
Q ss_pred cCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCc---cEEEEecccccCCCCCCCCEEEEccCCCC
Q 009641 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415 (530)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~---~iLVaT~~~~~GiDip~~~~VI~~~~p~s 415 (530)
|..+..++.+...|...+ +.+..+||+++..+|.++++.|+++.. .+|++|.++++|||++.+++||+||+|+|
T Consensus 579 sq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wn 655 (800)
T 3mwy_W 579 SQMVRMLDILGDYLSIKG---INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWN 655 (800)
T ss_dssp ESCHHHHHHHHHHHHHHT---CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSC
T ss_pred echHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCC
Confidence 999999999999998776 888999999999999999999998654 48999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcCCCCccE--EEEeecc--hHHHHHHHHHHh
Q 009641 416 IKTYIHRAGRTARAGQLGRC--FTLLHKD--EVKRFKKLLQKA 454 (530)
Q Consensus 416 ~~~y~Qr~GR~gR~g~~g~~--i~~~~~~--~~~~~~~~~~~~ 454 (530)
+..+.||+||++|.|+...+ +.|++.+ |...+....++.
T Consensus 656 p~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 656 PQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp SHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999999999999988554 4466665 445555555554
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=1.5e-31 Score=290.91 Aligned_cols=332 Identities=17% Similarity=0.171 Sum_probs=213.5
Q ss_pred HHHHHHHHHCC-------CCccchhhHHHHHHhcCCCC----------CCCcEEEECCCCchHHHHHHHHHHHHhhhcCC
Q 009641 37 PRLKVALQNMG-------ISSLFPVQVAVWQETIGPGL----------FERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (530)
Q Consensus 37 ~~i~~~l~~~g-------~~~~~~~Q~~a~~~~~~~~~----------~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~ 99 (530)
+.+++.+..+- ...|+|+|..|++.++..+. .+++++++++||||||+++ ++++..+... .
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-~ 328 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-D 328 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-T
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-C
Confidence 44556666642 23699999999998775321 2368999999999999997 5666555432 2
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEe
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~ 178 (530)
...++|||||+++|+.|+.+.+..++.. .+.++.+..... ..+ ..+++|+|+
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~---------------------~~L~~~~~~IiVt 381 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLK---------------------RNLDKDDNKIIVT 381 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHH---------------------HHHHCSSCCEEEE
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHH---------------------HHhcCCCCCEEEE
Confidence 3358999999999999999999987643 122333322222 122 245799999
Q ss_pred CChHHHHHHhcCCCC-CCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhcccccc
Q 009641 179 TPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (530)
Q Consensus 179 Tp~~l~~~l~~~~~~-~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (530)
||++|..++...... .+..+.+||+||||++...+ ....+...++
T Consensus 382 Tiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~---~~~~I~~~~p------------------------------- 427 (1038)
T 2w00_A 382 TIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGE---AQKNLKKKFK------------------------------- 427 (1038)
T ss_dssp EHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHH---HHHHHHHHCS-------------------------------
T ss_pred EHHHHHHHHhcccchhccccccEEEEEccchhcchH---HHHHHHHhCC-------------------------------
Confidence 999999887653222 35578999999999986433 2344444432
Q ss_pred CCCCCCCCceeeEEEeEeecCChh-----hhhh----------------hccCCceEEecCCccccC-----c-c-----
Q 009641 258 GFKDKPYPRLVKMVLSATLTQDPN-----KLAQ----------------LDLHHPLFLTTGETRYKL-----P-E----- 305 (530)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~-----~~~~----------------~~~~~~~~~~~~~~~~~~-----~-~----- 305 (530)
..+.++||||+..... .... ....-|+.+......... . .
T Consensus 428 --------~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 428 --------RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp --------SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred --------cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHH
Confidence 2278999999975421 1111 011112221111000000 0 0
Q ss_pred cceeeEeeccCCCcHHHHHH-HHHhc-----------CCCcEEEEcCChHHHHHHHHHHHhcCC---------CcceE-E
Q 009641 306 RLESYKLICESKLKPLYLVA-LLQSL-----------GEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKI-K 363 (530)
Q Consensus 306 ~~~~~~~~~~~~~k~~~l~~-~l~~~-----------~~~~~iVf~~s~~~~~~l~~~L~~~~~---------~~~~v-~ 363 (530)
.+...... ....+...+.. ++... .+.++||||+|+.+|..+++.|...+. .++++ .
T Consensus 500 ~i~~~~~l-~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 500 AAENQQAF-LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HTCSTTTT-TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHh-cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 00000000 01112222222 22211 245899999999999999999976531 12344 4
Q ss_pred Ecccc----------C----------CH-----------------------------HHHHHHHHHHhcCCccEEEEecc
Q 009641 364 EYSGL----------Q----------RQ-----------------------------SVRSKTLKAFREGKIQVLVSSDA 394 (530)
Q Consensus 364 ~~h~~----------~----------~~-----------------------------~~R~~~~~~f~~g~~~iLVaT~~ 394 (530)
++||+ + ++ ..|..++++|++|+.+|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 55642 2 22 24788999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCC----ccEEEEeec
Q 009641 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL----GRCFTLLHK 441 (530)
Q Consensus 395 ~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~----g~~i~~~~~ 441 (530)
+.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 659 lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred HHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 9999999999 688999999999999999999998753 667777654
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.98 E-value=3.6e-31 Score=240.58 Aligned_cols=202 Identities=33% Similarity=0.482 Sum_probs=169.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc--CCC
Q 009641 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVR 100 (530)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~--~~~ 100 (530)
+|+++ +|++.+.+.|.++||..|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+... ...
T Consensus 2 ~f~~~------~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~ 71 (207)
T 2gxq_A 2 EFKDF------PLKPEILEALHGRGLTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGR 71 (207)
T ss_dssp CGGGS------CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTC
T ss_pred Chhhc------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCC
Confidence 46666 4999999999999999999999999998775 78999999999999999999999988642 124
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||++||++|+.|+++.+++++.. +++...+|+......... +..+++|+|+||
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------------~~~~~~i~v~T~ 128 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEA---------------------LLRGADAVVATP 128 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHH---------------------HHHCCSEEEECH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHH---------------------hhCCCCEEEECH
Confidence 668999999999999999999998764 678888888775554332 234679999999
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEechhHhhhHhhhhHHHHHHhhcccCcccccccccccccccccchhhhhccccccCCC
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (530)
+++.+.+.+ ..+.+.++++||+||||++.+.++...+..++..++.
T Consensus 129 ~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~--------------------------------- 174 (207)
T 2gxq_A 129 GRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP--------------------------------- 174 (207)
T ss_dssp HHHHHHHHH-TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCT---------------------------------
T ss_pred HHHHHHHHc-CCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCc---------------------------------
Confidence 999999887 5567889999999999999998888888888766432
Q ss_pred CCCCCceeeEEEeEeecCChhhhhhhccCCceEEec
Q 009641 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (530)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 296 (530)
..+++++|||++..+..+...++.+|..+..
T Consensus 175 -----~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 175 -----SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp -----TSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred -----cCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 2278999999998898999888888887654
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=2.5e-28 Score=257.43 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=110.0
Q ss_pred CcHHHHHHHHHh--cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEeccc
Q 009641 318 LKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (530)
Q Consensus 318 ~k~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~ 395 (530)
.+...+...+.. ..+.++||||+|+..++.+++.|...+ +.+..+||++++.+|.++++.|+.|+.+|||||+++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l 499 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHG---IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 499 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC---CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChh
Confidence 444555444443 257799999999999999999999876 788999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccC-----CCChhHHHHHHhhhhcCCCCccEEEEeecchHH
Q 009641 396 TRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (530)
Q Consensus 396 ~~GiDip~~~~VI~~~~-----p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~ 445 (530)
++|+|+|++++||++|. |.+..+|+||+||+||.| .|.+++|+++.+..
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~ 553 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEA 553 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHH
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHH
Confidence 99999999999999997 899999999999999995 89999999886543
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=3.6e-27 Score=243.79 Aligned_cols=131 Identities=25% Similarity=0.295 Sum_probs=110.3
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|+ .|+++|..+++.++. |+ ++.++||+|||++|.+|++..... +..++|++||++||.|.++++..+.
T Consensus 76 lG~-~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 899 999999999887764 66 999999999999999999654443 3479999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHH-HHHHhcCC-----CCCCC---
Q 009641 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLE--- 196 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~~~--- 196 (530)
.++|+++++++|+.+...... ..+++|+|+||++| +++++..- ...++
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~-----------------------ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~ 201 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRK-----------------------AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDH 201 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHH-----------------------HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSS
T ss_pred HhcCCeEEEEeCCCCHHHHHH-----------------------HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCC
Confidence 999999999999987443321 24579999999999 78887632 24567
Q ss_pred CccEEEEechhHhh
Q 009641 197 HLCYLVVDETDRLL 210 (530)
Q Consensus 197 ~~~~lViDEah~~~ 210 (530)
.+.++|+||+|+|+
T Consensus 202 ~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 202 PLHYAIIDEVDSIL 215 (997)
T ss_dssp SSCEEEETTHHHHT
T ss_pred CcceEEEechHHHH
Confidence 89999999999986
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=5.2e-27 Score=247.31 Aligned_cols=124 Identities=24% Similarity=0.298 Sum_probs=110.2
Q ss_pred CcHHHHHHHHHh--cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEeccc
Q 009641 318 LKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (530)
Q Consensus 318 ~k~~~l~~~l~~--~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~ 395 (530)
.+...+...+.. ..+.++||||+|+..++.+++.|...+ +.+..+||++++.+|.++++.|++|+.+|||||+++
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l 505 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG---IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 505 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC---CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchh
Confidence 344445444443 256799999999999999999999876 788999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccC-----CCChhHHHHHHhhhhcCCCCccEEEEeecchHH
Q 009641 396 TRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (530)
Q Consensus 396 ~~GiDip~~~~VI~~~~-----p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~ 445 (530)
++|+|+|++++||+++. |.+..+|+||+||+||. ..|.+++|+++.+..
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~ 559 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKS 559 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHH
Confidence 99999999999999997 99999999999999998 789999999987543
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.1e-27 Score=208.02 Aligned_cols=149 Identities=26% Similarity=0.458 Sum_probs=139.9
Q ss_pred cccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhc
Q 009641 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (530)
Q Consensus 304 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~ 383 (530)
+..+.+++..+....|...|..++....++++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG---YPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34577888888889999999999998888999999999999999999999865 889999999999999999999999
Q ss_pred CCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 384 g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|++|.+++|+.+.+...+.++.+..+
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999999999998887764
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3.5e-27 Score=206.43 Aligned_cols=148 Identities=26% Similarity=0.395 Sum_probs=135.8
Q ss_pred ccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcC
Q 009641 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (530)
Q Consensus 305 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 384 (530)
..+.+++..+....|...|..+++....+++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC---CCEEEEECCCCHHHHHHHHHHHHCC
Confidence 4577888888889999999999998888999999999999999999999875 8899999999999999999999999
Q ss_pred CccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecc-hHHHHHHHHHHhc
Q 009641 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKAD 455 (530)
Q Consensus 385 ~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~-~~~~~~~~~~~~~ 455 (530)
+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...++.+.+...
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999986 4566676666553
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=208.54 Aligned_cols=150 Identities=29% Similarity=0.501 Sum_probs=134.4
Q ss_pred cccceeeEeeccCCC-cHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHh
Q 009641 304 PERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382 (530)
Q Consensus 304 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~ 382 (530)
+..+.+++..++... |...|..+++....+++||||+++..++.++..|...+ +.+..+||+|++.+|..+++.|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG---HQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECSSCCHHHHHHHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHH
Confidence 456777777777655 99999999998888999999999999999999999765 88999999999999999999999
Q ss_pred cCCccEEEEecccccCCCCCCCCEEEEccCC------CChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcC
Q 009641 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (530)
Q Consensus 383 ~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p------~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 456 (530)
+|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+.+.+...+.++.+.++.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 8999999999999999999999999999999888888877653
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=3.5e-27 Score=209.63 Aligned_cols=164 Identities=26% Similarity=0.349 Sum_probs=128.9
Q ss_pred hccCCceEEecCCccccCcccceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEc
Q 009641 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (530)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~ 365 (530)
.++.+|..+..+... .....+.+++..+....|...|..++... ++++||||+++..++.+++.|...+ +.+..+
T Consensus 10 ~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g---~~~~~l 84 (191)
T 2p6n_A 10 GVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKG---VEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHT---CCEEEE
T ss_pred cccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcC---CcEEEE
Confidence 345667666655443 33456777777888889999999988865 4689999999999999999998776 889999
Q ss_pred cccCCHHHHHHHHHHHhcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecc-hH
Q 009641 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EV 444 (530)
Q Consensus 366 h~~~~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~-~~ 444 (530)
||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 55
Q ss_pred HHHHHHHHHh
Q 009641 445 KRFKKLLQKA 454 (530)
Q Consensus 445 ~~~~~~~~~~ 454 (530)
..+..+.+.+
T Consensus 165 ~~~~~l~~~l 174 (191)
T 2p6n_A 165 SVLMDLKALL 174 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=1.7e-26 Score=209.33 Aligned_cols=147 Identities=30% Similarity=0.445 Sum_probs=135.4
Q ss_pred ceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCc
Q 009641 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (530)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 386 (530)
..+....+....|...|..++....++++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDLSQGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---CCEEEECSSSCHHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 34566667788999999999998889999999999999999999999876 889999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcC
Q 009641 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (530)
Q Consensus 387 ~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 456 (530)
+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.+++|+++.+...+..+.+..+.
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999988888777653
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=4.1e-27 Score=208.39 Aligned_cols=150 Identities=29% Similarity=0.489 Sum_probs=124.7
Q ss_pred CcccceeeEeeccCCCcHHHHHHHHHhc-CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHH
Q 009641 303 LPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (530)
Q Consensus 303 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f 381 (530)
.+..+.+++..++...|...|..++... .+.++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT---CCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC---CceEEEeCCCCHHHHHHHHHHH
Confidence 3456778888888889999999999876 57899999999999999999999765 8899999999999999999999
Q ss_pred hcCCccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhc
Q 009641 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (530)
Q Consensus 382 ~~g~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~ 455 (530)
++|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++.+...+.++.+.+.
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888887777664
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=4.9e-27 Score=204.44 Aligned_cols=148 Identities=27% Similarity=0.447 Sum_probs=131.3
Q ss_pred cceeeEeeccCCC-cHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcC
Q 009641 306 RLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (530)
Q Consensus 306 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g 384 (530)
.+.+++..++... |...|..+++....+++||||++++.++.+++.|...+ +.+..+||+|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4556666666666 99999999998888999999999999999999999765 7899999999999999999999999
Q ss_pred CccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcC
Q 009641 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (530)
Q Consensus 385 ~~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 456 (530)
+.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+++.+...+.++.+.++.
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 151 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSC
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999999888888776643
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=3.2e-26 Score=216.96 Aligned_cols=147 Identities=29% Similarity=0.445 Sum_probs=133.4
Q ss_pred ceeeEeeccCCCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCc
Q 009641 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (530)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 386 (530)
+.++++.+....|...|..+++...++++||||++++.++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT---CCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 46777888889999999999998889999999999999999999998765 889999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHhcC
Q 009641 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (530)
Q Consensus 387 ~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 456 (530)
+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+..+.
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999998888888777653
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=2.9e-27 Score=206.94 Aligned_cols=145 Identities=32% Similarity=0.496 Sum_probs=131.6
Q ss_pred ceeeEeeccC-CCcHHHHHHHHHhcCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCC
Q 009641 307 LESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (530)
Q Consensus 307 ~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 385 (530)
+.+++..++. ..|...|..+++...++++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++|+
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 4455555565 7888889898888778899999999999999999998765 88999999999999999999999999
Q ss_pred ccEEEEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccEEEEeecchHHHHHHHHHHh
Q 009641 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (530)
Q Consensus 386 ~~iLVaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~~ 454 (530)
.+|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++|+.+.+...+.++.+.+
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYI 149 (170)
Confidence 999999999999999999999999999999999999999999999999999999999888777776654
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.92 E-value=1.8e-24 Score=223.70 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=92.6
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
+|| +|+|+|.+++..+...+..++++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc-
Confidence 578 99999999988776666678999999999999999999998753 347999999999999999888774
Q ss_pred cccCceEEEeecCCch--HHHHHH-----------Hhh-------c---Ccccc---CccCCchhHHHhhcCCCcEEEeC
Q 009641 126 PAVGLSVGLAVGQSSI--ADEISE-----------LIK-------R---PKLEA---GICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 126 ~~~~~~v~~~~g~~~~--~~~~~~-----------~~~-------~---~~~~~---~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
++++..+.|.... ...... +.. . ..+.. .....+....+.....++|+|+|
T Consensus 75 ---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n 151 (540)
T 2vl7_A 75 ---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMT 151 (540)
T ss_dssp ---TCCEEEC---------------------------------------------------------CTTGGGCSEEEEE
T ss_pred ---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEC
Confidence 5666665553310 000000 000 0 00000 00001111122334567999999
Q ss_pred ChHHHHHHhcCC-C-----CCCCCccEEEEechhHhh
Q 009641 180 PGRLMDHINATR-G-----FTLEHLCYLVVDETDRLL 210 (530)
Q Consensus 180 p~~l~~~l~~~~-~-----~~~~~~~~lViDEah~~~ 210 (530)
++.|++...... . -.+...+++||||||++.
T Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 152 YPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp THHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999987543211 0 023567899999999983
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.90 E-value=1.5e-22 Score=210.22 Aligned_cols=153 Identities=20% Similarity=0.141 Sum_probs=111.0
Q ss_pred CCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
|| +++|+|.+++..+...+..++++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++..+..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 56 8999999998877766667899999999999999999999997 234899999999999999999999887
Q ss_pred ccCceEEEeecCCch---------------------------------HHHHHHHhhcCccccCccCCchhHHHhhcCCC
Q 009641 127 AVGLSVGLAVGQSSI---------------------------------ADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (530)
Q Consensus 127 ~~~~~v~~~~g~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (530)
..++++..+.|..+. ........+. . ......+....+.....+
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~-G--~~~~~Cpy~~ar~~~~~a 149 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKD-G--LQDKFCPYYSLLNSLYKA 149 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHH-H--HHHTCCHHHHHHHHGGGC
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHc-C--CcCCcCccHHHHhhhhcC
Confidence 778888888774321 0000000000 0 000112222334455678
Q ss_pred cEEEeCChHHHHHHhcCCCCCC-CCccEEEEechhHhhh
Q 009641 174 DILVATPGRLMDHINATRGFTL-EHLCYLVVDETDRLLR 211 (530)
Q Consensus 174 ~Ili~Tp~~l~~~l~~~~~~~~-~~~~~lViDEah~~~~ 211 (530)
+|+|+||..|++...+.. +.+ ....++||||||++.+
T Consensus 150 dIVV~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 150 DVIALTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp SEEEEETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG
T ss_pred CEEEeCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH
Confidence 999999999998754422 222 4678999999999977
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=183.22 Aligned_cols=144 Identities=21% Similarity=0.230 Sum_probs=104.0
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC--CCcccEEEEcCcHHHHHH-HHHHHH
Q 009641 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQ-VKDVFA 122 (530)
Q Consensus 46 ~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~--~~~~~~lil~Pt~~L~~Q-~~~~l~ 122 (530)
.+...|+++|.++++.++. ++++++.+|||+|||++++++++..+.... ..+.++||++|+++|+.| +.+.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 3445899999999988774 789999999999999999999987775531 235589999999999999 778888
Q ss_pred HhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCC-----CCCCC
Q 009641 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-----FTLEH 197 (530)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-----~~~~~ 197 (530)
++... ++++..+.|+........ .+...++|+|+||++|...+..... ..+.+
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~ 162 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISFP---------------------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSD 162 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCHH---------------------HHHHHCSEEEEEHHHHHHHHHC-------CCCGGG
T ss_pred HHhcc-CceEEEEeCCcccchhHH---------------------hhccCCCEEEECHHHHHHHHhccCcccccccchhc
Confidence 88665 678888888764332211 1123469999999999998876432 45778
Q ss_pred ccEEEEechhHhhhHhhh
Q 009641 198 LCYLVVDETDRLLREAYQ 215 (530)
Q Consensus 198 ~~~lViDEah~~~~~~~~ 215 (530)
+++||+||||++.+.++.
T Consensus 163 ~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 163 FSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp CSEEEETTC-------CH
T ss_pred ccEEEEECchhhccCCcH
Confidence 999999999999776443
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=179.29 Aligned_cols=180 Identities=21% Similarity=0.263 Sum_probs=122.5
Q ss_pred ccCCCCCCcccCCCCCCCCCCCC--C-----CCHHHHHHHH--------------HCCCCccchhhHHHHHHhcCCCCCC
Q 009641 11 VLPWMRSPVDVSLFEDCPLDHLP--C-----LDPRLKVALQ--------------NMGISSLFPVQVAVWQETIGPGLFE 69 (530)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--~-----l~~~i~~~l~--------------~~g~~~~~~~Q~~a~~~~~~~~~~~ 69 (530)
|++|..+...++.|...+++..+ . +++.+.+.+. ..+...++++|.++++.+.. |
T Consensus 1 ~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~----g 76 (235)
T 3llm_A 1 VVPWSPPQSNWNPWTSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQ----N 76 (235)
T ss_dssp CCCCCCCCTTEETTTTEECCSSTTTTSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGGGHHHHHHHHHH----C
T ss_pred CcCCCCCCCCCCCCcCCccCCCCcccCChhhhcHHHHHHHHHHhhcCHHHHHHHHHHhcCChHHHHHHHHHHHhc----C
Confidence 56788888888888766654332 1 1122222222 22233689999999888764 8
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcC-CCcccEEEEcCcHHHHHHHHHHHHHhccc-cCceEEEeecCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISE 147 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~-~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~-~~~~v~~~~g~~~~~~~~~~ 147 (530)
+++++.||||||||.++.+++++...... ..+.++++++|+++|+.|+++.+...... .+..++.......
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~------- 149 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES------- 149 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-------
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-------
Confidence 89999999999999999888888766532 23458999999999999999888765432 2333332111100
Q ss_pred HhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh-hhHhhh-hHHHHHHhh
Q 009641 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAYQ-AWLPTVLQL 224 (530)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~-~~~~~~-~~~~~i~~~ 224 (530)
......++|+|+||+++.+++.+ .++++++||+||||.+ ++.++. ..+..++..
T Consensus 150 -------------------~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 150 -------------------ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp -------------------ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred -------------------ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 00113468999999999999876 2778999999999985 666665 455555544
No 90
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.85 E-value=1.7e-20 Score=195.97 Aligned_cols=87 Identities=22% Similarity=0.168 Sum_probs=74.9
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
+|||.|.+.+.++...+..++++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.++.+....+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 689999999988777666799999999999999999999999988652 45899999999999999999999877667
Q ss_pred ceEEEeecCC
Q 009641 130 LSVGLAVGQS 139 (530)
Q Consensus 130 ~~v~~~~g~~ 139 (530)
+++..+.|..
T Consensus 80 ~~~~~l~gr~ 89 (620)
T 4a15_A 80 IRAIPMQGRV 89 (620)
T ss_dssp CCEEECCCHH
T ss_pred eEEEEEECCC
Confidence 8888877764
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=9.9e-21 Score=179.95 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=100.4
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
+|+++|.++++.++. +++.++.+|||+|||+++++++...+..+ ..++||++||++|+.|+.+.+++++...+
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC---CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 899999999988765 56789999999999999988887766542 23799999999999999999999976656
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
..+..+.|+..... ......+|+|+||+.+.... ...+.++++||+||||++
T Consensus 186 ~~~~~~~~~~~~~~------------------------~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------------------KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLA 237 (282)
T ss_dssp GGEEECSTTCSSTT------------------------CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGC
T ss_pred ceEEEEeCCCcchh------------------------hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccC
Confidence 67777777654221 11245699999999875431 234668999999999999
Q ss_pred hhH
Q 009641 210 LRE 212 (530)
Q Consensus 210 ~~~ 212 (530)
...
T Consensus 238 ~~~ 240 (282)
T 1rif_A 238 TGK 240 (282)
T ss_dssp CHH
T ss_pred Ccc
Confidence 653
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=6.5e-19 Score=162.17 Aligned_cols=116 Identities=28% Similarity=0.307 Sum_probs=93.4
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccC
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~ 129 (530)
.|+++|.+++..++. ++++++.+|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 799999999887664 5679999999999999987766542 347999999999999999998884 6
Q ss_pred ce-EEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechhH
Q 009641 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (530)
Q Consensus 130 ~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 208 (530)
+. +..+.|+.. ...+|+|+||+.+....... ...+++|||||||+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~ 203 (237)
T 2fz4_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (237)
T ss_dssp GGGEEEESSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSC
T ss_pred CCeEEEEeCCCC------------------------------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCcc
Confidence 67 777777653 23599999999987766531 23589999999999
Q ss_pred hhhHhh
Q 009641 209 LLREAY 214 (530)
Q Consensus 209 ~~~~~~ 214 (530)
+.+..+
T Consensus 204 l~~~~~ 209 (237)
T 2fz4_A 204 LPAESY 209 (237)
T ss_dssp CCTTTH
T ss_pred CCChHH
Confidence 976554
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=6.4e-19 Score=164.92 Aligned_cols=125 Identities=15% Similarity=0.230 Sum_probs=98.2
Q ss_pred cCCCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhc-CCCcceEEEccccCCHHHHHHHHHHHhcC-Ccc-EE
Q 009641 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VL 389 (530)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~-iL 389 (530)
....|...+..++... .+.++||||++...++.+...|... + +.+..+||++++.+|.++++.|++| ... +|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC---SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 4567888888888765 6789999999999999999999874 5 7788999999999999999999998 677 78
Q ss_pred EEecccccCCCCCCCCEEEEccCCCChhHHHHHHhhhhcCCCCccE--EEEeecc
Q 009641 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKD 442 (530)
Q Consensus 390 VaT~~~~~GiDip~~~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~--i~~~~~~ 442 (530)
++|+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+ +.|+..+
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999999988765 4566665
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.60 E-value=8.5e-08 Score=100.12 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=60.5
Q ss_pred HHHHHHHHC-CCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHH--HHHHHHHHHHhhhcCCCcccEEEEcCcHHHH
Q 009641 38 RLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT--LSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (530)
Q Consensus 38 ~i~~~l~~~-g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT--~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~ 114 (530)
.+...|.++ +-..-.+.|+.|+..++ .++.+++.|++|+||| ++++++++..+.. ..+.++++++||..++
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--~~~~~vll~APTg~AA 209 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCS--SCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--cCCCeEEEEeCChhHH
Confidence 344455543 11223788999988776 3789999999999999 5555555554422 2355899999999999
Q ss_pred HHHHHHHHHhccccC
Q 009641 115 LQVKDVFAAIAPAVG 129 (530)
Q Consensus 115 ~Q~~~~l~~~~~~~~ 129 (530)
.++.+.+...+..++
T Consensus 210 ~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 210 ARLTESLGKALRQLP 224 (608)
T ss_dssp HHHHHHHTHHHHHSS
T ss_pred HHHHHHHHHHHhcCC
Confidence 999888776654433
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.27 E-value=1.7e-06 Score=91.34 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=53.2
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
..+++-|++|+..++. ...-.||+||+|||||.+..-.+.+.+.. +.++|+++||..-++++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3589999999887763 12347999999999999865544444432 458999999999999999888765
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.17 E-value=1.2e-05 Score=84.31 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=54.0
Q ss_pred CCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
+..+++.|.+|+..++. +.-++|.||+|+|||.+... ++..+... .+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHH-HHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45689999999887764 45689999999999987544 44444432 3458999999999999998888764
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=2.3e-05 Score=84.08 Aligned_cols=70 Identities=24% Similarity=0.246 Sum_probs=53.7
Q ss_pred CCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
+..+++.|.+|+..++. +.-++|.||+|||||.+... ++..+... .+.++++++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~-~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHH-HHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHH-HHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 35688999999887753 45689999999999987544 33333321 2347999999999999999988875
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.09 E-value=5e-06 Score=83.98 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=52.6
Q ss_pred HCCCCccchhhHHHHHHhcCCCCCCC-cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHH
Q 009641 45 NMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (530)
Q Consensus 45 ~~g~~~~~~~Q~~a~~~~~~~~~~~~-~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l 121 (530)
-+.|..|++-|++|+..++..+..++ .+++.|+.|||||.+. ..++..+.... ...+++++||...+..+.+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~--~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG--ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT--CCCEEEEESSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC--CceEEEecCcHHHHHHHHhhh
Confidence 36788999999999987654332333 8999999999999764 34555555432 136999999988776655443
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.05 E-value=2.8e-05 Score=83.26 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=53.7
Q ss_pred CCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
...+++.|.+|+..++. +.-.+|.||+|+|||.+... ++..+... .+.++++++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHH-HHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHH-HHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 34689999999887764 45689999999999987543 44444432 3458999999999999988887764
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.83 E-value=4.7e-05 Score=78.59 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=49.3
Q ss_pred CCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHH
Q 009641 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (530)
Q Consensus 47 g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (530)
++ .+++.|++|+..++. ++.+++.||+|+|||.+. ..++..+.. .+.++++++||...+..+.+.
T Consensus 187 ~~-~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i-~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 187 RK-GLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTT-KAVADLAES---LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TT-TCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHH-HHHHHHHHH---TTCCEEEEESSHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHH-HHHHHHHHh---cCCeEEEecCcHHHHHHhHhh
Confidence 44 789999999887653 678999999999999764 334444444 345799999999988766554
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.60 E-value=0.00088 Score=62.64 Aligned_cols=126 Identities=14% Similarity=0.077 Sum_probs=90.2
Q ss_pred cCCCcHHHHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEe
Q 009641 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (530)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT 392 (530)
..+.|+..|..++... .+.+++||+......+.+..++...+ ++...+.|.... .+.+ -.++...+.+.|
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~---~~y~RlDG~~~~-~~~k----~~~~~~~i~Llt 177 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNK---VHIKRYDGHSIK-SAAA----ANDFSCTVHLFS 177 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSS---CEEEESSSCCC------------CCSEEEEEEE
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCC---CceEeCCCCchh-hhhh----cccCCceEEEEE
Confidence 3678888888888743 56799999999999999999998655 888899988543 2221 124556666667
Q ss_pred cccccCCC-----CCCCCEEEEccCCCChhHH-HHHHhhhhcCC----CCccEEEEeecchHHHHH
Q 009641 393 DAMTRGMD-----VEGVNNVVNYDKPAYIKTY-IHRAGRTARAG----QLGRCFTLLHKDEVKRFK 448 (530)
Q Consensus 393 ~~~~~GiD-----ip~~~~VI~~~~p~s~~~y-~Qr~GR~gR~g----~~g~~i~~~~~~~~~~~~ 448 (530)
...+-|+| +...+.||.||..+++..- +|.+-|+.|.| +.-.++-+++..-.+...
T Consensus 178 sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHH
T ss_pred CCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHH
Confidence 76677786 5679999999999999875 99998888863 345677788887655444
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.47 E-value=0.00024 Score=75.21 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=61.7
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc-
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~- 127 (530)
..+++-|++|+.. .+..++|.|+.|||||.+.+.-+...+.....+..++|++++|+..+.++.+.+.++...
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 4789999998542 256799999999999998666555555544444568999999999999999999887543
Q ss_pred -cCceEEEeec
Q 009641 128 -VGLSVGLAVG 137 (530)
Q Consensus 128 -~~~~v~~~~g 137 (530)
.++.+..+++
T Consensus 82 ~~~~~v~Tfhs 92 (647)
T 3lfu_A 82 QGGMWVGTFHG 92 (647)
T ss_dssp CTTCEEEEHHH
T ss_pred cCCcEEEcHHH
Confidence 2455555443
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.26 E-value=0.00052 Score=72.83 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=62.1
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc-
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV- 128 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~- 128 (530)
.+++-|++|+.. .+..++|.|+.|||||.+..--+...+...+....++|+|+.|+..+.++.+.+.......
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 578999998653 2568999999999999986655555555433345689999999999999999998875432
Q ss_pred --CceEEEeec
Q 009641 129 --GLSVGLAVG 137 (530)
Q Consensus 129 --~~~v~~~~g 137 (530)
++.+.++++
T Consensus 76 ~~~~~v~Tfhs 86 (673)
T 1uaa_A 76 ARGLMISTFHT 86 (673)
T ss_dssp TTTSEEEEHHH
T ss_pred ccCCEEEeHHH
Confidence 466666554
No 104
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.18 E-value=0.00086 Score=71.61 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=62.2
Q ss_pred CccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc-
Q 009641 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (530)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~- 127 (530)
..+++-|++|+.. .+..++|.|+.|||||.+...-+...+........++|+++.|+..|.++.+.+..+...
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4789999998653 256899999999999998665555555543444568999999999999999998887432
Q ss_pred -cCceEEEeec
Q 009641 128 -VGLSVGLAVG 137 (530)
Q Consensus 128 -~~~~v~~~~g 137 (530)
.++.+.++++
T Consensus 84 ~~~~~v~Tfhs 94 (724)
T 1pjr_A 84 AEDVWISTFHS 94 (724)
T ss_dssp GTTSEEEEHHH
T ss_pred ccCcEEeeHHH
Confidence 2466666554
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.03 E-value=0.00084 Score=65.91 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=33.2
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
+-.++.|+.|+|||... .+.+.. .+.+|++||++++.++.+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~~-----~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVNF-----EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCCT-----TTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHH----HHHhcc-----CCeEEEeCCHHHHHHHHHHhhh
Confidence 34789999999999853 333221 2579999999999887777643
No 106
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.89 E-value=0.013 Score=56.84 Aligned_cols=71 Identities=14% Similarity=0.016 Sum_probs=53.8
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcc
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~ 126 (530)
.|+|+|+..+..+. ..+-+++..+-+.|||.+....++..+... ++..+++++|++..|..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~--~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSS--SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 78999999876542 135588999999999988766665544432 455799999999999888887777654
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.75 E-value=0.00071 Score=58.71 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=26.8
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~ 111 (530)
++-.++.+|+|+|||..++- ++.++.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~---~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKL---GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHH---TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHH---CCCeEEEEeecc
Confidence 55678999999999987543 3333333 244789988884
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.75 E-value=0.0057 Score=52.69 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.++.+++.||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36789999999999997643
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.61 E-value=0.0053 Score=54.71 Aligned_cols=39 Identities=23% Similarity=0.162 Sum_probs=27.4
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~ 111 (530)
|.-.++.+|+|+|||.+.+- ++.++.. .+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~-~~~r~~~---~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR-RLHRLEY---ADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHH---TTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHH-HHHHHHh---cCCEEEEEEecc
Confidence 55688899999999986544 4444443 345788887764
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.58 E-value=0.0094 Score=51.72 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=28.2
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~ 111 (530)
.|+-.++.+|+|+|||.+.+- ++.++.. .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~-~a~r~~~---~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR-RIRRAKI---AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHHH---TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHH-HHHHHHH---CCCEEEEEEecc
Confidence 355678899999999986543 4444443 456899999884
No 111
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.36 E-value=0.0061 Score=63.31 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=55.6
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhcccc
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~ 128 (530)
.|+|+|+..+..+- ..+.+++..+-|+|||.+....++..+... ++..+++++|+...|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999876542 245689999999999988765555554443 35579999999999999888888776543
No 112
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.34 E-value=0.0067 Score=68.67 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=54.7
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC--CCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~--~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
.+++-|.+++.. .+++++|.|+.|||||.+.+--++..+..+. ....+++++++|+..+.++.+.+...
T Consensus 10 ~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 789999998542 3779999999999999986666666665532 24458999999999999998888763
No 113
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.23 E-value=0.0046 Score=54.15 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=27.4
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
|.-.++.+|+|+|||... +-.+.++.. .+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~L-lr~~~r~~~---~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEEL-IRRLRRGIY---AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHH---TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHHHH---cCCceEEEEeccC
Confidence 556789999999999754 334455444 3457999999754
No 114
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.17 E-value=0.0054 Score=52.94 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=27.2
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
++-.++.+|+|||||.-. +-++.+... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~L-l~~i~n~~~---~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL-MRRVRRFQI---AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHH---TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHH---cCCeEEEEccc
Confidence 566889999999999643 334444443 34689999887
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.17 E-value=0.015 Score=55.67 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=28.0
Q ss_pred cchhhHHHHHHhcCCCCCC---CcEEEECCCCchHHHHHHH
Q 009641 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~li~apTGsGKT~~~~~ 88 (530)
++|+|.+++..+...+..+ +.+++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 4789988887665443333 3489999999999986554
No 116
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.03 E-value=0.014 Score=51.12 Aligned_cols=40 Identities=23% Similarity=0.051 Sum_probs=27.0
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
|+-.++.+|+|+|||.+++- .+.++.. .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~-~a~r~~~---~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIR-RVRRTQF---AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHH---TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHHH---CCCEEEEEEeccC
Confidence 45567899999999986544 3444433 4558999998864
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.91 E-value=0.055 Score=51.42 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+..+++.||+|+|||..+-. +...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~---~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR---GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT---TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC---CCEEEEEE
Confidence 46899999999999976433 33333332 33455554
No 118
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.041 Score=51.78 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=20.8
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
.+.++++.||+|+|||.+.-. ++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHH
Confidence 457899999999999987543 4555543
No 119
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.27 E-value=0.028 Score=58.15 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=41.7
Q ss_pred ccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHH
Q 009641 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (530)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (530)
.+|.-|.+|+..++... . .-.++.|+-|.|||.+..+.+ ..+.. .++|.+|+.+-+..
T Consensus 175 ~~T~dQ~~al~~~~~~~-~-~~~vlta~RGRGKSa~lG~~~-a~~~~------~~~vtAP~~~a~~~ 232 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP-P-GVAAVTAARGRGKSALAGQLI-SRIAG------RAIVTAPAKASTDV 232 (671)
T ss_dssp SCCHHHHHHHHHHTTCC-S-EEEEEEECTTSSHHHHHHHHH-HHSSS------CEEEECSSCCSCHH
T ss_pred CCCHHHHHHHHHHHHhh-h-CeEEEecCCCCCHHHHHHHHH-HHHHh------CcEEECCCHHHHHH
Confidence 67889999998877633 2 347899999999997655543 33321 36888999875543
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.13 E-value=0.021 Score=50.66 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=28.1
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
|+-.++.+++|+|||..++- .+.+... .+.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~-~~~r~~~---~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMR-RVRRFQI---AQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHH-HHHHHHT---TTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHH-HHHHHHH---CCCeEEEEeecCC
Confidence 55678899999999976443 3333332 4568999988753
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.00 E-value=0.14 Score=50.84 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=24.0
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
...+++.||+|+|||..+-. +...+... ..+..++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~-~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHH-CCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEeeH
Confidence 46799999999999986443 33333322 12335565543
No 122
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.87 E-value=0.14 Score=44.99 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.7
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999754
No 123
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.68 E-value=0.33 Score=41.43 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.9
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
...+++.||+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 124
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.62 E-value=0.089 Score=56.08 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-cccCCCCCCCCEEE
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiDip~~~~VI 408 (530)
.+.+++|.+|++..+...++.+.+.. ..++.+..+||+++..+|...++.+.+|..+|+|+|.. +...+++.++++||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 35799999999999999988887542 34588999999999999999999999999999999964 44557788888777
Q ss_pred E
Q 009641 409 N 409 (530)
Q Consensus 409 ~ 409 (530)
.
T Consensus 496 I 496 (780)
T 1gm5_A 496 I 496 (780)
T ss_dssp E
T ss_pred e
Confidence 5
No 125
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.38 E-value=0.31 Score=44.71 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.1
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
...+++.||+|+|||..+.
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3679999999999998654
No 126
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.25 E-value=0.16 Score=49.95 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=65.6
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----cccCCCCCCC
Q 009641 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRGMDVEGV 404 (530)
Q Consensus 330 ~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~GiDip~~ 404 (530)
..+.++||.+|++..+..+++.+...+..++.+..+||+.+..++....+.+..|..+|+|+|+- +.. ++...+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~ 140 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 140 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccc
Confidence 35678999999999999999999886545579999999999999999999999999999999973 222 455567
Q ss_pred CEEEEc
Q 009641 405 NNVVNY 410 (530)
Q Consensus 405 ~~VI~~ 410 (530)
++||.=
T Consensus 141 ~~iViD 146 (414)
T 3oiy_A 141 DFVFVD 146 (414)
T ss_dssp SEEEES
T ss_pred cEEEEe
Confidence 777653
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.19 E-value=0.22 Score=47.15 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=17.2
Q ss_pred CccEEEEechhHhhhHhhhhHHHHHHh
Q 009641 197 HLCYLVVDETDRLLREAYQAWLPTVLQ 223 (530)
Q Consensus 197 ~~~~lViDEah~~~~~~~~~~~~~i~~ 223 (530)
..++++|||+|.+........+..++.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le 131 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFME 131 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHH
Confidence 578999999999862323333444443
No 128
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.04 E-value=0.095 Score=46.99 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.6
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.++.+++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999997643
No 129
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.04 E-value=0.12 Score=48.38 Aligned_cols=19 Identities=16% Similarity=-0.165 Sum_probs=15.5
Q ss_pred CcEEEECCCCchHHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~ 88 (530)
...++.||.|+|||.++..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999976543
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.82 E-value=0.21 Score=48.45 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.6
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.+..+++.||+|+|||..+-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 35689999999999998643
No 131
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.38 E-value=0.69 Score=38.56 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=55.9
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||.++++.-+..+++.+... ++.+..++|+.+..+....+. +.-....+|+|+|.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMN-----------------EFKRGEYRYLVATD 93 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEECG
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEECC
Confidence 347999999999999999888875 788999999987665533221 11224578999992
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEech
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDEa 206 (530)
.+. .++++..+++||.-+.
T Consensus 94 -----~~~--~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 94 -----VAA--RGIDIENISLVINYDL 112 (163)
T ss_dssp -----GGT--TTCCCSCCSEEEESSC
T ss_pred -----hhh--cCCchhcCCEEEEeCC
Confidence 222 4677888898886443
No 132
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.23 E-value=0.39 Score=47.91 Aligned_cols=50 Identities=6% Similarity=-0.142 Sum_probs=33.1
Q ss_pred HHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
.++.++..+..|.-+++.|++|+|||..++-.+...... .+.+++|+..-
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~Vl~~s~E 241 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENVAIFSLE 241 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCEEEEESS
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEEECC
Confidence 456666666667789999999999997654444433332 23368887643
No 133
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.23 E-value=0.095 Score=49.60 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.7
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.||+|+|||..+-
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999998643
No 134
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.16 E-value=0.89 Score=45.41 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=40.2
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccc
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~ 127 (530)
.+....+.+-||||||++..- +... .+..+|||+|+...|.|+++.++.+.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER------HAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 356789999999999985322 2221 1225999999999999999999998653
No 135
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.99 E-value=0.42 Score=46.97 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=22.8
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
.-+++.+|+|+|||.+....+ ..+.. .+.+++++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~---~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK---RGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH---cCCeEEEEe
Confidence 457889999999998755433 33333 344676665
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.98 E-value=0.67 Score=44.28 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.4
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.||+|+|||..+-
T Consensus 38 ~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999997643
No 137
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.70 E-value=0.76 Score=43.40 Aligned_cols=67 Identities=12% Similarity=-0.046 Sum_probs=35.9
Q ss_pred HHHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc--CCCcccEEEEcCcHHH-HHHHHHHHHHh
Q 009641 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDL-ALQVKDVFAAI 124 (530)
Q Consensus 58 a~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~--~~~~~~~lil~Pt~~L-~~Q~~~~l~~~ 124 (530)
.++.++. .+..|.-+++.||+|+|||..+...+....... ...+.+++|+.-...+ ..++.+.++.+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444553 333456789999999999986544443322110 0013468888654322 33444444443
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.69 E-value=0.23 Score=48.12 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.9
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999998653
No 139
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.49 E-value=0.85 Score=38.50 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=54.7
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
.+.++||.++++..+..+++.+... ++.+..++|+.+..+....+. ..-....+|+|+|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~-----------------~f~~g~~~vLvaT 91 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQ-----------------RFRDGKEKVLITT 91 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHH-----------------HHHTTSCSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEe
Confidence 3458999999999999888888764 788999999987666543221 1123457999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEE
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
. .+ ..++++..+++||.
T Consensus 92 ~-----~~--~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 92 N-----VC--ARGIDVKQVTIVVN 108 (175)
T ss_dssp C-----SC--CTTTCCTTEEEEEE
T ss_pred c-----ch--hcCCCcccCCEEEE
Confidence 2 12 24677888998885
No 140
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.44 E-value=1.2 Score=37.06 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=54.9
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||.++++.-+..+++.++.. ++.+..++|+.+..+....+. ..-....+|+|+|.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMK-----------------EFRSGSSRILISTD 88 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEEG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHH-----------------HHHcCCCEEEEEcC
Confidence 347999999999999988888875 678999999987665543221 11224578999992
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEec
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDE 205 (530)
.+. .++++..+++||.-+
T Consensus 89 -----~~~--~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 89 -----LLA--RGIDVQQVSLVINYD 106 (165)
T ss_dssp -----GGT--TTCCCCSCSEEEESS
T ss_pred -----hhh--cCCCcccCCEEEEeC
Confidence 222 467777888888643
No 141
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.42 E-value=0.48 Score=47.00 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.4
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
.++++.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 579999999999997643
No 142
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.29 E-value=1.8 Score=37.21 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=55.2
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~ 181 (530)
.++||.++++.-+..+++.++.. ++.+..++|+.+..+....+. ..-....+|+|+|
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLvaT-- 111 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIE-----------------AFREGKKDVLVAT-- 111 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTSCSEEEEC--
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCEEEEEc--
Confidence 47999999999999999888876 788999999987665543221 1223457899999
Q ss_pred HHHHHHhcCCCCCCCCccEEEEec
Q 009641 182 RLMDHINATRGFTLEHLCYLVVDE 205 (530)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~lViDE 205 (530)
+.+. .++++..+++||.-+
T Consensus 112 ---~~~~--~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 112 ---DVAS--KGLDFPAIQHVINYD 130 (191)
T ss_dssp ---HHHH--TTCCCCCCSEEEESS
T ss_pred ---Cchh--cCCCcccCCEEEEeC
Confidence 2333 357788888888633
No 143
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.26 E-value=1.7 Score=43.02 Aligned_cols=60 Identities=13% Similarity=-0.110 Sum_probs=36.4
Q ss_pred HHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHH
Q 009641 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (530)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l 121 (530)
.++.++..+..|.-+++.|++|+|||..++-.+...... .+.+++|++.-.. ..|+...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~slE~~-~~~l~~R~ 248 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSLEMP-AAQLTLRM 248 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEESSSC-HHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEECCCC-HHHHHHHH
Confidence 355566656667779999999999997554444443332 2346888764322 33444443
No 144
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.18 E-value=0.95 Score=39.78 Aligned_cols=75 Identities=8% Similarity=0.246 Sum_probs=55.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCC--cceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----c-ccCCCCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEG 403 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~-~~GiDip~ 403 (530)
..++||.+++++.+..+++.+...... +..+..++|+.+...+. +.+..+..+|+|+|.- + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999999888775322 47888999998865544 3445677899999962 1 23467777
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887775
No 145
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.10 E-value=0.54 Score=52.66 Aligned_cols=79 Identities=11% Similarity=0.246 Sum_probs=65.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhc-CCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-ccccCCCCCCCCEEE
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-~~~~GiDip~~~~VI 408 (530)
.+.+++|.++++..+...++.+.+. ...+..+..+++..+..++...++.+.+|..+|+|+|. .+...+.+.++++||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999999999999888753 33457888999999999999999999999999999995 455567777777766
Q ss_pred E
Q 009641 409 N 409 (530)
Q Consensus 409 ~ 409 (530)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 5
No 146
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.10 E-value=0.22 Score=47.56 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.4
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
++++.||+|+|||..+.
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999997644
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.05 E-value=1 Score=39.90 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
+.+++.||+|+|||....
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 148
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.90 E-value=1 Score=39.43 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=54.9
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||.++++.-+..+++.+... ++.+..++|+.+..++...+. ..-....+|+|+|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~-----------------~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLG-----------------AFRQGEVRVLVATD 89 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHH-----------------HHHSSSCCEEEECT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHH-----------------HHHCCCCeEEEecC
Confidence 348999999999999988888875 788999999988666543321 12234578999992
Q ss_pred hHHHHHHhcCCCCCCCCccEEEE
Q 009641 181 GRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
.+. .++++..+++||.
T Consensus 90 -----~~~--~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 90 -----VAA--RGLDIPQVDLVVH 105 (212)
T ss_dssp -----TTT--CSSSCCCBSEEEE
T ss_pred -----hhh--cCCCCccCcEEEE
Confidence 222 4677888998884
No 149
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.83 E-value=0.27 Score=54.80 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=66.4
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----cccCCCCCCC
Q 009641 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRGMDVEGV 404 (530)
Q Consensus 330 ~~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~GiDip~~ 404 (530)
..+.++||.+|+++.+..+++.+...+..++.+..+||+++..+|...++.+..|..+|+|+|+- +.. +++.++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 35678999999999999999999986655679999999999989999999999999999999962 222 455678
Q ss_pred CEEEEc
Q 009641 405 NNVVNY 410 (530)
Q Consensus 405 ~~VI~~ 410 (530)
++||.=
T Consensus 198 ~~lViD 203 (1104)
T 4ddu_A 198 DFVFVD 203 (1104)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 877763
No 150
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.28 E-value=1.6 Score=36.78 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=55.4
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||.|+++.-+..+++.+... ++.+..++|+.+..+....+. ..-....+|+|+|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQ-----------------QFKDFQRRILVATN 89 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEESS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHH-----------------HHHCCCCcEEEECC
Confidence 347999999999999999888875 788999999987665533221 12234579999993
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEec
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViDE 205 (530)
- + ..++++..+++||.-+
T Consensus 90 ~-----~--~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 90 L-----F--GRGMDIERVNIAFNYD 107 (172)
T ss_dssp C-----C--STTCCGGGCSEEEESS
T ss_pred c-----h--hcCcchhhCCEEEEEC
Confidence 2 1 2467777888888644
No 151
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.99 E-value=1.1 Score=38.39 Aligned_cols=93 Identities=23% Similarity=0.167 Sum_probs=52.6
Q ss_pred CchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCc
Q 009641 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158 (530)
Q Consensus 79 GsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 158 (530)
.+.|... +.-++... ..+.++||.++++.-+..+++.++.. ++.+..++|+.+..+....+
T Consensus 29 ~~~K~~~-L~~ll~~~----~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~---------- 89 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNAT----GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEAL---------- 89 (185)
T ss_dssp GGGHHHH-HHHHHHHC-----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHH----------
T ss_pred cHHHHHH-HHHHHHhc----CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHH----------
Confidence 4667653 23333322 13458999999999999988888775 78899999987654432211
Q ss_pred cCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEe
Q 009641 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (530)
Q Consensus 159 ~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViD 204 (530)
...-....+|+|+|. .+. .++++..+++||.=
T Consensus 90 -------~~f~~g~~~vLvaT~-----~~~--~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 90 -------HQFRSGKSPILVATA-----VAA--RGLDISNVKHVINF 121 (185)
T ss_dssp -------HHHHHTSSSEEEEEC-------------CCCSBSEEEES
T ss_pred -------HHHHcCCCeEEEEcC-----hhh--cCCCcccCCEEEEe
Confidence 112234578999992 122 35677788888863
No 152
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.97 E-value=1.3 Score=41.60 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=35.6
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhc--------CCCc----ccEEEEcCcHHH-HHHHHHHHHHh
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--------AVRC----LRALVVLPTRDL-ALQVKDVFAAI 124 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~--------~~~~----~~~lil~Pt~~L-~~Q~~~~l~~~ 124 (530)
++.++. .+..|.-+++.+|+|+|||..++-.+.+..... -..+ .+++|+.-...+ ..++.+.++.+
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 344442 233456689999999999986554444322110 0112 478888754332 34445444444
No 153
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.33 E-value=0.23 Score=43.17 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=18.3
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhh
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLS 95 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~ 95 (530)
+.+++.||+|+|||..+.. +...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 6899999999999986433 344443
No 154
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.29 E-value=0.68 Score=41.05 Aligned_cols=75 Identities=9% Similarity=0.158 Sum_probs=50.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec------ccccCCCCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD------AMTRGMDVEGV 404 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~------~~~~GiDip~~ 404 (530)
.+.++||.+++++.+..+.+.+......+..+..++|+.+...+... +. ...+|+|+|. .....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 45689999999999999999998876556788888888765444332 33 3488999996 12234667778
Q ss_pred CEEEE
Q 009641 405 NNVVN 409 (530)
Q Consensus 405 ~~VI~ 409 (530)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87665
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.82 E-value=1.1 Score=42.08 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.6
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.||+|+|||..+.
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999997643
No 156
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.82 E-value=1.4 Score=43.29 Aligned_cols=59 Identities=22% Similarity=0.081 Sum_probs=35.0
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc--CcHHHHHHHHHHHHHhccccCceEEEe
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~--Pt~~L~~Q~~~~l~~~~~~~~~~v~~~ 135 (530)
.-+++.+++|+|||.+..-.+ ..+.. .+.+++++. |.|.-+ .+.++.++...++.+...
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~---~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~ 161 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQK---RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGN 161 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHT---TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECC
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHH---CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEec
Confidence 357889999999998755433 33333 344676665 444443 334445555556665543
No 157
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.42 E-value=0.93 Score=40.25 Aligned_cols=74 Identities=11% Similarity=0.155 Sum_probs=53.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC--CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----c-ccCCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVE 402 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~-~~GiDip 402 (530)
...++||.+++++.+..+.+.+...+. .+..+..++|+.+..++...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 356899999999999999999887642 257888899998876554433 35789999972 1 2245666
Q ss_pred CCCEEEE
Q 009641 403 GVNNVVN 409 (530)
Q Consensus 403 ~~~~VI~ 409 (530)
.+++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6776665
No 158
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.39 E-value=0.24 Score=40.54 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=16.9
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.+.++++.+|+|+|||..+-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 46789999999999997643
No 159
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.02 E-value=4.1 Score=36.53 Aligned_cols=75 Identities=13% Similarity=0.266 Sum_probs=53.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----cc--cCCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT--RGMDVE 402 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~--~GiDip 402 (530)
...++||.++++..+..+++.+.... ..++.+..++|+.+...+...+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 34579999999999999998887652 2247788899988765544333 256899999952 22 356777
Q ss_pred CCCEEEE
Q 009641 403 GVNNVVN 409 (530)
Q Consensus 403 ~~~~VI~ 409 (530)
.+++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 7887765
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.93 E-value=0.83 Score=43.93 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
+.+++.||+|+|||..+.
T Consensus 39 ~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457999999999998653
No 161
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.70 E-value=0.51 Score=40.91 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=30.2
Q ss_pred HHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHH
Q 009641 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 37 ~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (530)
..|.+.|+--|+ .+-.+ ..++..++..+-..+.+++.+|+|+|||..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 456666665453 44444 4445555554333345899999999999754
No 162
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.66 E-value=0.39 Score=44.75 Aligned_cols=45 Identities=11% Similarity=-0.129 Sum_probs=29.4
Q ss_pred CCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHH
Q 009641 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (530)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L 113 (530)
+..| -+++.+|+|+|||...+-.+.+..... .+.+++|+..-..+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~ 70 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGI 70 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchh
Confidence 3346 689999999999986555444443321 23478888765444
No 163
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=88.61 E-value=5.3 Score=40.77 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=66.5
Q ss_pred chHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCcc
Q 009641 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (530)
Q Consensus 80 sGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (530)
..+....+..+...+... ..+.++||.|+++.-+..+++.+...... ++.+..++|+.+..+....+.
T Consensus 319 ~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~---------- 386 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVK---------- 386 (563)
T ss_dssp THHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHH----------
T ss_pred HhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHH----------
Confidence 344443333344444332 24558999999999999999999886442 688999999987665543211
Q ss_pred CCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEech
Q 009641 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (530)
Q Consensus 160 ~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 206 (530)
.......+|+|+|. .+. .++++..+++||.-..
T Consensus 387 -------~f~~g~~~vLvaT~-----~~~--~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 387 -------RFKKDESGILVCTD-----VGA--RGMDFPNVHEVLQIGV 419 (563)
T ss_dssp -------HHHHCSSEEEEECG-----GGT--SSCCCTTCCEEEEESC
T ss_pred -------HHhcCCCCEEEEcc-----hhh--cCCCcccCCEEEEECC
Confidence 12234579999993 233 4688888998886543
No 164
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.29 E-value=0.42 Score=55.78 Aligned_cols=50 Identities=18% Similarity=0.089 Sum_probs=34.0
Q ss_pred HHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 59 ~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
++.++. .+..++++++.+|+|+|||..+...+.+... .+.+++|+...-.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~----~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEEcccc
Confidence 444444 2345788999999999999877665554443 3447888876533
No 165
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.08 E-value=4.1 Score=39.58 Aligned_cols=76 Identities=24% Similarity=0.207 Sum_probs=55.8
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
.+.++||.++++.-+..+++.+.+. ++.+..++|+.+..++...+. +.-....+|+|+|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~-----------------~f~~g~~~vlvaT 333 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALH-----------------QFRSGKSPILVAT 333 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTSSCEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHH-----------------HHHcCCCCEEEEC
Confidence 4558999999999999998888875 788999999988665533221 1123457899999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEE
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
+.+. .++++..+++||.
T Consensus 334 -----~~~~--~Gidip~v~~Vi~ 350 (417)
T 2i4i_A 334 -----AVAA--RGLDISNVKHVIN 350 (417)
T ss_dssp -----HHHH--TTSCCCCEEEEEE
T ss_pred -----Chhh--cCCCcccCCEEEE
Confidence 3344 4678888998885
No 166
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.49 E-value=1.5 Score=39.23 Aligned_cols=74 Identities=11% Similarity=0.215 Sum_probs=53.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----cccc-CCCCCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEGV 404 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiDip~~ 404 (530)
+.++||.+++++.+..+.+.+.... ..++.+..++|+.+.......+. . ..+|+|+|. .+.. .+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 5679999999999999988776542 22478888999988766554443 2 478999996 2222 3577778
Q ss_pred CEEEE
Q 009641 405 NNVVN 409 (530)
Q Consensus 405 ~~VI~ 409 (530)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87765
No 167
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.46 E-value=0.44 Score=42.89 Aligned_cols=55 Identities=18% Similarity=0.071 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
+..|.-+++.|++|+|||..++-.+.+..... +..++|++-. .-..++.+.+..+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeeccc-CCHHHHHHHHHHc
Confidence 33467799999999999976554444444432 2357777643 2244555555443
No 168
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=87.43 E-value=4.4 Score=34.82 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=52.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----ccc-cCCCCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGV 404 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~-~GiDip~~ 404 (530)
.+.++||.++++..+..+++.+...... ..+..++|+.+.......+. ...+|+|+|. .+. ..+++..+
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 145 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPH-LKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRV 145 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTT-SCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhc-ceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhc
Confidence 3568999999999999999999876432 67788888877654443332 2578999996 222 24667777
Q ss_pred CEEEE
Q 009641 405 NNVVN 409 (530)
Q Consensus 405 ~~VI~ 409 (530)
++||.
T Consensus 146 ~~iVi 150 (207)
T 2gxq_A 146 EVAVL 150 (207)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 77665
No 169
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.35 E-value=7.1 Score=40.04 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=59.3
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
.+.++||.|+|+.-+..+++.+++.... ++.+..++|+.+..+....+. +......+|+|+|
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~-----------------~F~~g~~~vLVaT 348 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVK-----------------RFKKDESGILVCT 348 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHH-----------------HHHHCSSEEEEEC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHH-----------------HhhcCCCeEEEEc
Confidence 4558999999999999999999886542 678999999987665543221 1223457899999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEech
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEa 206 (530)
. .+. .++++..+++||.-..
T Consensus 349 ~-----~~~--~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 349 D-----VGA--RGMDFPNVHEVLQIGV 368 (579)
T ss_dssp G-----GGT--SSCCCTTCCEEEEESC
T ss_pred c-----hhh--cCCCcccCCEEEEcCC
Confidence 3 233 4678888999886554
No 170
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=86.80 E-value=1.4 Score=39.30 Aligned_cols=76 Identities=11% Similarity=0.216 Sum_probs=46.6
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC-CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----cccc-CCCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 403 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiDip~ 403 (530)
.+.++||.+++++.+..+++.+...+. .+..+..++|+.+.. ...+.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 356899999999999999998887642 245677777776533 334455667789999994 3333 356667
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777665
No 171
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=86.52 E-value=4.9 Score=34.52 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=51.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCC--cceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----ccccC-CCCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEG 403 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iDip~ 403 (530)
..++||.++++..+..+.+.+...... +..+..++|+.+..+.... + .+..+|+|+|. .+..+ +++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999998888765321 4678888998876543322 2 35678999996 22233 46667
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777665
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.52 E-value=0.75 Score=41.17 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=32.0
Q ss_pred CCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
..|.-+++.||+|+|||..+...+...... +.+++++.-.. -..++.+.+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e~-~~~~~~~~~~~ 72 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALEE-HPVQVRQNMAQ 72 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESSS-CHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccC-CHHHHHHHHHH
Confidence 356778999999999998654434433322 33678776432 23455555543
No 173
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.46 E-value=0.76 Score=43.03 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=23.4
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhh-hcCCCcccEEEEc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVL 108 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~-~~~~~~~~~lil~ 108 (530)
+.++++.||+|+|||..+.. +...+. . .+..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~~~---~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELSEK---KGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHHHH---SCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHHHh---cCCcEEEEE
Confidence 57899999999999986543 333343 3 233455543
No 174
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.43 E-value=0.9 Score=40.18 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=28.3
Q ss_pred HHHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 58 a~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+++.++. .+..|.-+++.+|+|+|||......+...... +.+++++.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~----~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD----GDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH----TCCEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC----CCeEEEEE
Confidence 3444453 44457789999999999997544433222222 22567665
No 175
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=86.37 E-value=2.7 Score=43.97 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=59.8
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
.+.++||.|+|+.-+..+++.+.+. ++++..++|+.+..+....+. ..-....+|+|+|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~-----------------~f~~g~~~VLVaT 502 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIR-----------------DLRLGKYDVLVGI 502 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHH-----------------HHHHTSCSEEEES
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHH-----------------HHhcCCeEEEEec
Confidence 3458999999999999888888876 788888898877655533211 1112457999998
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
- .+. .++++..+++||+-+++..
T Consensus 503 ~-----~l~--~GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 503 N-----LLR--EGLDIPEVSLVAILDADKE 525 (661)
T ss_dssp C-----CCS--TTCCCTTEEEEEETTTTCC
T ss_pred c-----hhh--CCcccCCCCEEEEeCcccc
Confidence 3 222 4688889999999998754
No 176
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.29 E-value=0.26 Score=40.21 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=15.6
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.+.++++.+|+|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 357899999999999975
No 177
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.21 E-value=0.43 Score=43.54 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.5
Q ss_pred CCCCcEEEECCCCchHHHHH
Q 009641 67 LFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~ 86 (530)
..|.-+++.+|||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35677999999999999753
No 178
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=86.14 E-value=1.3 Score=49.91 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=43.8
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhc--------CCCcccEEEEcCcHHHHHHHHHHHHHhc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNR--------AVRCLRALVVLPTRDLALQVKDVFAAIA 125 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~--------~~~~~~~lil~Pt~~L~~Q~~~~l~~~~ 125 (530)
...+|.|.-|||||.+...-++..+... ...-.++|+|+=|+.-+.++.+.+++..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 3459999999999998777777777532 1234479999999999999998888754
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.08 E-value=0.97 Score=42.15 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.6
Q ss_pred CCcEEEECCCCchHHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~ 88 (530)
+.++++.||+|+|||..+-.
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999986543
No 180
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.94 E-value=1.5 Score=41.17 Aligned_cols=61 Identities=8% Similarity=-0.243 Sum_probs=38.1
Q ss_pred HHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHH
Q 009641 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (530)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~ 123 (530)
.++.++..+..|.-+++.|++|+|||..++-.+...... +.+++|++-- .-..|+...+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~----g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT----TCEEEEEESS-SCHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEECC-CCHHHHHHHHHH
Confidence 455566666667789999999999997554444443332 2468888743 334444544443
No 181
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.73 E-value=1.3 Score=44.70 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=24.8
Q ss_pred HHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHH
Q 009641 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (530)
Q Consensus 41 ~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (530)
..|.++|. +.+.+..-+...+. .|..+++.||||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~---~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIE---HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHH---TTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHH
Confidence 34556662 33333333332333 477899999999999974
No 182
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=85.61 E-value=3.6 Score=38.15 Aligned_cols=75 Identities=21% Similarity=0.190 Sum_probs=54.2
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||.|+++.-++.+++.+... ++.+..++|+.+..++...+. ..-....+|+|+|.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~-----------------~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMG-----------------AFRQGEVRVLVATD 86 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHH-----------------HHHHTSCCEEEECS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHH-----------------HhhcCCceEEEEec
Confidence 447999999999988888877664 788999999987666543321 12234579999992
Q ss_pred hHHHHHHhcCCCCCCCCccEEEE
Q 009641 181 GRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
.+. .++++..+++||.
T Consensus 87 -----va~--~Gidi~~v~~VI~ 102 (300)
T 3i32_A 87 -----VAA--RGLDIPQVDLVVH 102 (300)
T ss_dssp -----TTT--CSTTCCCCSEEEE
T ss_pred -----hhh--cCccccceeEEEE
Confidence 222 4677888998884
No 183
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.50 E-value=0.69 Score=45.80 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=31.2
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~ 115 (530)
..+++|.|+||||||... ..++..+.. .+..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~---~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL---RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH---TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH---CCCcEEEEeCCCchhH
Confidence 468999999999999864 445555444 2346888889888754
No 184
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=85.47 E-value=1.7 Score=44.08 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=53.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~ 393 (530)
.+.+||.+|++..+....+.|...+ ..+..+||+.+..++......+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG---VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4789999999999999999998765 7888999999999999999999999999999996
No 185
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.45 E-value=0.72 Score=40.46 Aligned_cols=44 Identities=16% Similarity=-0.061 Sum_probs=28.7
Q ss_pred HHHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 58 a~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
.++.++. .+..|.-+++.+|+|+|||..+...+. .. +.+++++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~----~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LS----GKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HH----CSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---Hc----CCcEEEEE
Confidence 3455554 455677799999999999976544333 22 23577765
No 186
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=85.20 E-value=2.8 Score=43.12 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=53.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHH--hcCCccEEEEec
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF--REGKIQVLVSSD 393 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f--~~g~~~iLVaT~ 393 (530)
.+.+||.+|++..+....+.|...+ +.+..++|+++..++..++..+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG---ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT---CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5789999999999999999998875 8899999999999998888888 578899999997
No 187
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.83 E-value=6.6 Score=37.62 Aligned_cols=75 Identities=8% Similarity=0.260 Sum_probs=55.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCC--cceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-c-----ccCCCCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEG 403 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-~-----~~GiDip~ 403 (530)
..++||.|+++..+..+++.+...... +..+..++|+.+...... .+..+..+|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999998888765321 478889999988655543 345677899999962 1 23456777
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 887775
No 188
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.72 E-value=1.2 Score=54.45 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~ 88 (530)
|...+.+.+.++|+ ++.+.+..=+-++.+.....+.+++.||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 44566777778998 777777655545555555577899999999999998653
No 189
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=84.59 E-value=13 Score=32.98 Aligned_cols=74 Identities=12% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----cc-cCCCCCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT-RGMDVEGV 404 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~-~GiDip~~ 404 (530)
..++||.+++++.+..+.+.+.... ..+..+..++|+.+.......+ ....+|+|+|.- +. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 3589999999999999988887653 2346777888887765443322 346789999972 22 23567777
Q ss_pred CEEEE
Q 009641 405 NNVVN 409 (530)
Q Consensus 405 ~~VI~ 409 (530)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77665
No 190
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=84.47 E-value=2.5 Score=37.46 Aligned_cols=74 Identities=12% Similarity=0.189 Sum_probs=50.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----ccc--CCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR--GMDVE 402 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~--GiDip 402 (530)
.+.++||.++++..+..+++.+...+ ..++.+..++|+.+.......+ +..+|+|+|.- +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 35689999999999999999888764 2346788889987755443332 46799999962 222 35666
Q ss_pred CCCEEEE
Q 009641 403 GVNNVVN 409 (530)
Q Consensus 403 ~~~~VI~ 409 (530)
.+++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7776665
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.28 E-value=1.1 Score=37.82 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
...+++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999997644
No 192
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.06 E-value=0.3 Score=46.30 Aligned_cols=32 Identities=19% Similarity=0.054 Sum_probs=21.2
Q ss_pred hHHHHHHhcCCCCCCCcEEEECCCCchHHHHH
Q 009641 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (530)
|..++..+...+..+.++++.||+|+|||..+
T Consensus 32 ~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 32 QKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 33333333333334789999999999999754
No 193
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=84.06 E-value=6.4 Score=38.66 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=54.3
Q ss_pred cEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChH
Q 009641 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (530)
Q Consensus 103 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~ 182 (530)
++||.|+++.-+..+++.+... ++.+..++|+....++...+. +.-....+|+|+|.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLvaT~-- 358 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALR-----------------DFKNGSMKVLIATS-- 358 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHH-----------------HHHTSSCSEEEECG--
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHH-----------------HHHcCCCcEEEEch--
Confidence 4999999999999988888875 788999999987665543321 12224579999993
Q ss_pred HHHHHhcCCCCCCCCccEEEE
Q 009641 183 LMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 183 l~~~l~~~~~~~~~~~~~lVi 203 (530)
.+. .++++.++++||.
T Consensus 359 ---v~~--rGlDi~~v~~VI~ 374 (434)
T 2db3_A 359 ---VAS--RGLDIKNIKHVIN 374 (434)
T ss_dssp ---GGT--SSCCCTTCCEEEE
T ss_pred ---hhh--CCCCcccCCEEEE
Confidence 233 4688888999885
No 194
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=83.74 E-value=13 Score=38.69 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=58.6
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~T 179 (530)
+.++||.|+|+.-+..+.+.+.+. ++++..++|+.+..+.... .+.+. ...+|+|+|
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~------------------~~~f~~g~~~VLvaT 496 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQAL------------------IRDLRLGHYDCLVGI 496 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHH------------------HHHHHTTSCSEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHH------------------HHHhhcCCceEEEcc
Confidence 448999999999999988888876 6788888988776555332 12222 457999998
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
- .+. .++++..+++||+=+++..
T Consensus 497 ~-----~l~--~GlDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 497 N-----LLR--EGLDIPEVSLVAILDADKE 519 (664)
T ss_dssp C-----CCC--TTCCCTTEEEEEETTTTSC
T ss_pred C-----hhh--cCccCCCCCEEEEeCCccc
Confidence 2 222 4688888999998887653
No 195
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=82.97 E-value=4.4 Score=39.19 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=54.9
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||.++++.-+..+++.+... +..+..++|+.+..++...+. ..-....+|+|+|.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIE-----------------RFREGKEKVLVTTN 324 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHH-----------------HHHCCCCcEEEEcC
Confidence 347999999999999999988876 678899999987666533221 11224578999993
Q ss_pred hHHHHHHhcCCCCCCCCccEEEE
Q 009641 181 GRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
.+. .++++..+++||.
T Consensus 325 -----~~~--~Gidip~~~~Vi~ 340 (412)
T 3fht_A 325 -----VCA--RGIDVEQVSVVIN 340 (412)
T ss_dssp -----GGT--SSCCCTTEEEEEE
T ss_pred -----ccc--cCCCccCCCEEEE
Confidence 333 4678888999884
No 196
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=82.94 E-value=1.7 Score=38.11 Aligned_cols=74 Identities=11% Similarity=0.218 Sum_probs=46.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc------cccCCCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA------MTRGMDVEG 403 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~------~~~GiDip~ 403 (530)
...++||.++++..+..+.+.+.... ..+..+..++|+.+..+.... +. ..+|+|+|.- ....+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 35689999999999999998887653 235678888888765443322 22 3789999962 123456667
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777665
No 197
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=82.64 E-value=4.8 Score=38.64 Aligned_cols=78 Identities=13% Similarity=0.226 Sum_probs=57.0
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~T 179 (530)
+.++||.++++.-+..+++.++.. +..+..++|+.+..++...+ +.+ ....+|+|+|
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~------------------~~f~~g~~~vlv~T 300 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLI------------------DDFREGRSKVLITT 300 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHH------------------HHHHTTSCCEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHH------------------HHHHCCCCCEEEEC
Confidence 457999999999999999888875 67889999998766553322 222 2357899999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechh
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah 207 (530)
. .+. .++++..+++||.-+..
T Consensus 301 ~-----~~~--~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 301 N-----VLA--RGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp G-----GGS--SSCCCTTEEEEEESSCC
T ss_pred C-----hhh--cCCCcccCCEEEEcCCC
Confidence 3 233 46888889999875543
No 198
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.57 E-value=0.59 Score=44.99 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.+..+++.+|+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999998643
No 199
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.38 E-value=0.77 Score=43.29 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.1
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999998643
No 200
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=82.17 E-value=2.5 Score=38.35 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCCccchhhHHH-HHHhcCCCCCCC-cEEEECCCCchHHHHHH
Q 009641 37 PRLKVALQNMGISSLFPVQVAV-WQETIGPGLFER-DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 37 ~~i~~~l~~~g~~~~~~~Q~~a-~~~~~~~~~~~~-~~li~apTGsGKT~~~~ 87 (530)
..|.+.|+-.|+. +.+-.. +..++......+ .+++.||+|+|||..+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4788888887874 444332 233444321223 48999999999998654
No 201
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=82.08 E-value=1.5 Score=43.29 Aligned_cols=49 Identities=10% Similarity=-0.216 Sum_probs=33.1
Q ss_pred HHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
.++.++..+..|.-+++.|++|+|||..++-.+.+.... +.+++|++--
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSlE 234 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE 234 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEECC
Confidence 355566656667779999999999998655444444332 3468888743
No 202
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=82.01 E-value=4.4 Score=38.44 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=54.9
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (530)
.+.++||.++++.-+..+++.+++. +..+..++|+.+..+....+. ..-....+|+|+|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~~~~~vlv~T 295 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIR-----------------LFKQKKIRILIAT 295 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHH-----------------HHHTTSSSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEC
Confidence 4457999999999999999888876 678899999887665533211 1122457899999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEec
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDE 205 (530)
. .+. .++++..+++||.-.
T Consensus 296 ~-----~~~--~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 296 D-----VMS--RGIDVNDLNCVINYH 314 (367)
T ss_dssp T-----THH--HHCCCSCCSEEEESS
T ss_pred C-----hhh--cCCCcccCCEEEEec
Confidence 3 222 246677788888643
No 203
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=81.21 E-value=1.8 Score=40.85 Aligned_cols=59 Identities=14% Similarity=-0.116 Sum_probs=36.2
Q ss_pred HHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHH
Q 009641 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (530)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l 121 (530)
.++.++..+..|.-+++.|++|+|||..++-.+..... .+.+++|++.-. -..|+...+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEESSS-CHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeCCC-CHHHHHHHH
Confidence 34555665666777999999999999755444443333 234688886432 234444444
No 204
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=81.08 E-value=1.1 Score=54.30 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHHHH
Q 009641 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~~ 88 (530)
+...+.+.+.+.|+ .+.+.+..-+.++.+.+..++.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 45667778888888 667766443333333333467899999999999987654
No 205
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.03 E-value=0.76 Score=43.31 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=14.9
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
++-++|.||||+|||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346889999999999754
No 206
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=80.85 E-value=1.5 Score=35.85 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=16.4
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.+..+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999753
No 207
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.78 E-value=1.6 Score=41.69 Aligned_cols=48 Identities=19% Similarity=0.080 Sum_probs=30.6
Q ss_pred HHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 59 ~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
++.++. .+..|.-+++.+|+|+|||..++..+...... +.+++|+.-.
T Consensus 49 LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~----g~~vlyi~~E 98 (349)
T 2zr9_A 49 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA----GGIAAFIDAE 98 (349)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 444554 34456779999999999998655544433322 3367887643
No 208
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.65 E-value=2 Score=39.73 Aligned_cols=49 Identities=8% Similarity=-0.069 Sum_probs=30.1
Q ss_pred HHHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 58 a~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
+++.+.-.+..|.-+++.||+|+|||..... +...+... .+.+++++..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~-ia~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQ-QALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHH-HHHHHHHT--SCCCEEEEES
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHH-HHHHHHHH--cCCeEEEEeC
Confidence 4455555556678899999999999975443 33333221 2335767653
No 209
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=80.49 E-value=1.1 Score=38.07 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.9
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999753
No 210
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=80.49 E-value=0.35 Score=48.63 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCCCCCcEEEECCCCchHHHHH
Q 009641 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 56 ~~a~~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (530)
..++..+...+..+.++++.||+|+|||..+
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3333333333345789999999999999753
No 211
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=80.21 E-value=6.1 Score=38.10 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=54.6
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||.++++.-+..+++.++.. ++.+..++|+.+..++...+. ..-....+|+|+|.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFH-----------------EFRQGKVRTLVCSD 316 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSSSEEEESS
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHH-----------------HHhcCCCcEEEEcC
Confidence 348999999999999999888876 678899999987665533211 11224578999993
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEe
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVD 204 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViD 204 (530)
.+. .++++..+++||.-
T Consensus 317 -----~~~--~Gidip~~~~Vi~~ 333 (400)
T 1s2m_A 317 -----LLT--RGIDIQAVNVVINF 333 (400)
T ss_dssp -----CSS--SSCCCTTEEEEEES
T ss_pred -----ccc--cCCCccCCCEEEEe
Confidence 222 46778888888853
No 212
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.00 E-value=1.5 Score=43.65 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.9
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.++.+++.+|+|+|||..+-
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 45789999999999998654
No 213
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=79.77 E-value=1.9 Score=41.12 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=31.7
Q ss_pred HHHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 58 a~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
.++.++. .+..+.-+++.+++|+|||..++..+...... +.+++|+..-
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~----g~~vlyid~E 100 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 100 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeCC
Confidence 3455553 34456779999999999998765544443332 3368888753
No 214
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.73 E-value=1.5 Score=42.44 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
.+.+|+.||+|+|||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 578999999999999864
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.71 E-value=1.3 Score=40.29 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.+..+++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3578999999999999754
No 216
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.64 E-value=0.83 Score=39.11 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.7
Q ss_pred CcEEEECCCCchHHHH
Q 009641 70 RDLCINSPTGSGKTLS 85 (530)
Q Consensus 70 ~~~li~apTGsGKT~~ 85 (530)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 217
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.52 E-value=1.4 Score=43.05 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=24.3
Q ss_pred HHHCCCCccchhhHHHHHHhcCCCCCCCcEEEECCCCchHHHH
Q 009641 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (530)
Q Consensus 43 l~~~g~~~~~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (530)
+.++|+ .+-+..++..++. ..+.-+++.+|||||||..
T Consensus 146 l~~Lg~---~~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 146 LHSLGM---TAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp GGGSCC---CHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHH
T ss_pred HHHcCC---CHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHH
Confidence 344554 2334555555542 2455689999999999975
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.50 E-value=1.4 Score=43.16 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.9
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
.+.+|+.||+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 578999999999999864
No 219
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=79.45 E-value=1.6 Score=42.33 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=28.5
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
.+.+++|.||||+|||...-. ++..+.. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH---CCCEEEEEeCCcC
Confidence 467899999999999976544 3333332 3447888878765
No 220
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=79.32 E-value=2.3 Score=42.63 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=26.8
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
.+..++|.++||||||.+.-..+...+........+.+++=|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 3578999999999999865444444444433333444444444
No 221
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=79.25 E-value=1.9 Score=41.41 Aligned_cols=49 Identities=16% Similarity=0.005 Sum_probs=31.1
Q ss_pred HHHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 58 a~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
.++.++. .+..|.-++|.+|+|+|||..++-.+.+.... +.+++|+..-
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~----g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA----GGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC----CCeEEEEECC
Confidence 3455554 44456778999999999997654444433322 3368887644
No 222
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.21 E-value=2.2 Score=43.01 Aligned_cols=59 Identities=5% Similarity=-0.124 Sum_probs=35.9
Q ss_pred HHHhcCCCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHH
Q 009641 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (530)
Q Consensus 59 ~~~~~~~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l 121 (530)
++.++..+..|.-++|.|++|+|||...+-.+.+.... .+.+++|++--. -..|+...+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEESSS-CHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEeccC-CHHHHHHHH
Confidence 34455556667779999999999998654444443322 144688886432 234555444
No 223
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.13 E-value=1.2 Score=41.37 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.++.+++.||+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 46789999999999998643
No 224
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=79.11 E-value=0.46 Score=45.03 Aligned_cols=34 Identities=26% Similarity=0.165 Sum_probs=23.1
Q ss_pred chhhHHHHHHhc----CCCCCCCc--EEEECCCCchHHHH
Q 009641 52 FPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 52 ~~~Q~~a~~~~~----~~~~~~~~--~li~apTGsGKT~~ 85 (530)
..-|.+++..+. ..++.|.| +++.++||||||.+
T Consensus 72 ~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 72 TISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp TCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred CCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeE
Confidence 345666665532 33345766 67899999999987
No 225
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=79.07 E-value=6 Score=38.29 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=54.4
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~ 181 (530)
.++||.|+++.-+..+++.+.+. ++.+..++|+.+..++...+. ..-....+|+|+|.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~- 334 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMK-----------------EFRSGASRVLISTD- 334 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHH-----------------HHHHTSSCEEEECG-
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHH-----------------HHHCCCCCEEEECC-
Confidence 37999999999999988888875 678899999987665533211 11224578999993
Q ss_pred HHHHHHhcCCCCCCCCccEEEEe
Q 009641 182 RLMDHINATRGFTLEHLCYLVVD 204 (530)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~lViD 204 (530)
.+. .++++..+++||.-
T Consensus 335 ----~~~--~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 335 ----VWA--RGLDVPQVSLIINY 351 (410)
T ss_dssp ----GGS--SSCCCTTEEEEEES
T ss_pred ----hhh--CcCCcccCCEEEEE
Confidence 233 46788889988853
No 226
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=79.07 E-value=1 Score=41.93 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.1
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
+-++|.||||||||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34788999999999754
No 227
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.00 E-value=0.96 Score=38.98 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.1
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
++-+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 566899999999999653
No 228
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.98 E-value=1.3 Score=40.76 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.++.+++.||+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4578999999999999754
No 229
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=78.96 E-value=0.6 Score=44.38 Aligned_cols=35 Identities=29% Similarity=0.193 Sum_probs=23.5
Q ss_pred cchhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
+..-|.+++..+ +..++.|.| ++..++||||||.+
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEe
Confidence 334566665543 333445766 67899999999986
No 230
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.89 E-value=1.6 Score=41.86 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.++.+++.||+|+|||..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35689999999999998654
No 231
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=78.85 E-value=1.2 Score=38.64 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=15.0
Q ss_pred cEEEECCCCchHHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~ 88 (530)
-.++.|++|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 578999999999986544
No 232
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=78.83 E-value=8.1 Score=34.85 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=52.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----ccc--cCCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT--RGMDVE 402 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~--~GiDip 402 (530)
.+.++||.++++..+..+++.+.... ..+..+..++|+........ .+..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 35679999999999999999888753 23456777888877554433 33344 89999995 122 246777
Q ss_pred CCCEEEE
Q 009641 403 GVNNVVN 409 (530)
Q Consensus 403 ~~~~VI~ 409 (530)
.+++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7887765
No 233
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=78.78 E-value=0.76 Score=44.22 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=24.9
Q ss_pred cchhhHHHHHHhc----CCCCCCCc--EEEECCCCchHHHH
Q 009641 51 LFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 51 ~~~~Q~~a~~~~~----~~~~~~~~--~li~apTGsGKT~~ 85 (530)
+..-|.+++..+. ..++.|.| +++.|+||||||.+
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeE
Confidence 4456777776533 33456766 67799999999986
No 234
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=78.70 E-value=1.3 Score=40.02 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 235
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=78.43 E-value=1.3 Score=38.35 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.++.+++.||+|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998643
No 236
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.33 E-value=1.7 Score=36.62 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.++.+++.|++|||||...-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 46789999999999998643
No 237
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.31 E-value=1.1 Score=41.60 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.0
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
+-++|.||||||||..+
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 34788999999999754
No 238
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=78.20 E-value=0.82 Score=43.59 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=22.6
Q ss_pred hhhHHHHHH----hcCCCCCCCc--EEEECCCCchHHHH
Q 009641 53 PVQVAVWQE----TIGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 53 ~~Q~~a~~~----~~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
.-|.+++.. ++..++.|.| +++.|+||||||.+
T Consensus 59 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 59 CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp CCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceE
Confidence 356655553 2334456766 77899999999986
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=78.18 E-value=17 Score=33.64 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=21.3
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+-+++.+|+|+|||......+ ..+.. .+.+++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA-~~l~~---~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA-KMFVD---EGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHH-HHHHh---cCCEEEEEc
Confidence 347789999999997654433 22322 233566654
No 240
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=78.13 E-value=1.7 Score=41.46 Aligned_cols=49 Identities=16% Similarity=-0.059 Sum_probs=30.1
Q ss_pred HHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcH
Q 009641 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (530)
Q Consensus 59 ~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~ 111 (530)
++.++. .+..|.-++|.+|+|+|||..++. +...+.. .+.+++|+..-.
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~-la~~~~~---~gg~VlyId~E~ 99 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALH-AIAEAQK---MGGVAAFIDAEH 99 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHH-HHHHHHH---TTCCEEEEESSC
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHH-HHHHHHh---cCCeEEEEeccc
Confidence 344444 333466789999999999975443 4433333 233688886543
No 241
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=78.07 E-value=2.6 Score=42.76 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=28.9
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~ 111 (530)
..+++|.+.||||||.+.-..+...+........+.+++=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 3679999999999998765545555444443445566665653
No 242
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.05 E-value=1.5 Score=43.00 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
..+.+|+.||+|+|||+.+
T Consensus 205 ~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCCEEEEESCTTTTHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999864
No 243
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=78.02 E-value=2 Score=40.03 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=14.6
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997643
No 244
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=77.69 E-value=1.6 Score=37.79 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.5
Q ss_pred CCCCCcEEEECCCCchHHHHH
Q 009641 66 GLFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~ 86 (530)
+..++-+++.||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 446788999999999999753
No 245
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=77.55 E-value=1.4 Score=38.46 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.7
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.|.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999753
No 246
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=77.51 E-value=1.4 Score=37.47 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998654
No 247
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.50 E-value=0.96 Score=43.09 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.1
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
.++++.||+|+|||..+-
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 459999999999997643
No 248
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.43 E-value=1.8 Score=42.51 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.3
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
..+.+|+.||+|+|||+.+
T Consensus 214 ~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3578999999999999864
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=77.42 E-value=1.6 Score=37.66 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.|+-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5777899999999999753
No 250
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=77.35 E-value=20 Score=26.65 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=40.9
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccE
Q 009641 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388 (530)
Q Consensus 335 ~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~i 388 (530)
.+||.+.-+-...+...+...| ..+..+.++...+.|.+-++.|...-.++
T Consensus 5 fvvfssdpeilkeivreikrqg---vrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG---VRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT---CEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCC---eEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 4677777777788888888766 88999999999999999999998754443
No 251
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=77.34 E-value=5 Score=37.20 Aligned_cols=71 Identities=10% Similarity=0.181 Sum_probs=48.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCC--CcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----c-c-cCCCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-T-RGMDVE 402 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~-~-~GiDip 402 (530)
..++||.+++++.|..+++.+...+. .+..+...+|+.....+ .....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999999999888876543 24566666666543211 1356789999972 1 2 357787
Q ss_pred CCCEEEE
Q 009641 403 GVNNVVN 409 (530)
Q Consensus 403 ~~~~VI~ 409 (530)
.+.++|.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888776
No 252
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=77.12 E-value=0.7 Score=44.30 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=22.5
Q ss_pred hhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
.-|.+++..+ +..++.|.| +++.|+||||||.+
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 3466666543 233445766 77899999999976
No 253
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=77.07 E-value=1.3 Score=40.97 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=15.8
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
++.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999764
No 254
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.95 E-value=1.5 Score=40.65 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.1
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
..+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568899999999998643
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=76.93 E-value=1.3 Score=37.39 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.2
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
++-+++.|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=76.90 E-value=2.5 Score=39.19 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=22.8
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
++.+++.+|+|+|||......+. .+... .|.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~-~l~~~--~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA-ISMLE--KHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH-HHHHT--TCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-HHHHh--cCCEEEEEe
Confidence 45688999999999986544332 22211 233566654
No 257
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.74 E-value=1.5 Score=40.72 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.2
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997643
No 258
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=76.58 E-value=1.8 Score=37.87 Aligned_cols=74 Identities=9% Similarity=0.134 Sum_probs=48.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCC-----cceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----cccc-CCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMD 400 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD 400 (530)
+.++||.+++++.+..+.+.+...... +..+..++|+.+.....+ .+ .+..+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 468999999999999998887664321 467778888875432211 11 23578999995 2222 345
Q ss_pred CCCCCEEEE
Q 009641 401 VEGVNNVVN 409 (530)
Q Consensus 401 ip~~~~VI~ 409 (530)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 666676654
No 259
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=76.09 E-value=2.6 Score=37.57 Aligned_cols=25 Identities=28% Similarity=0.103 Sum_probs=18.9
Q ss_pred CCCCCcEEEECCCCchHHHHHHHHH
Q 009641 66 GLFERDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~~~~ 90 (530)
+..|.-+.+.+|+|+|||..+...+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3457789999999999997654433
No 260
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=75.81 E-value=10 Score=36.96 Aligned_cols=43 Identities=26% Similarity=0.171 Sum_probs=24.9
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc--CcHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLAL 115 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~--Pt~~L~~ 115 (530)
++-+.+.+++|+|||......+ ..+.. .+.+++++. +.+..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA-~~l~~---~g~~Vllvd~D~~r~aa~ 142 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA-LYYKG---KGRRPLLVAADTQRPAAR 142 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH-HHHHT---TTCCEEEEECCSSCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHH---cCCeEEEeeccccCchhH
Confidence 3447778999999998654433 22322 234666664 4444443
No 261
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=75.79 E-value=1.8 Score=40.36 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.+.++++.||+|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3578999999999999764
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.76 E-value=1.6 Score=37.62 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=14.9
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3677999999999999753
No 263
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.68 E-value=17 Score=35.66 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=61.3
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeec--------CCchHHHHHHHh
Q 009641 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELI 149 (530)
Q Consensus 78 TGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~~~ 149 (530)
..++|.... .-++...... ..+.++||.++++.-+..+++.+... ++.+..++| +.+..++...+
T Consensus 340 ~~~~k~~~l-~~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~- 412 (494)
T 1wp9_A 340 LDHPKMDKL-KEIIREQLQR-KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLIL- 412 (494)
T ss_dssp CSCHHHHHH-HHHHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHH-
T ss_pred CCChHHHHH-HHHHHHHhcc-CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHH-
Confidence 456676543 3344333211 13458999999999999888888876 788889998 44433332211
Q ss_pred hcCccccCccCCchhHHHhhcCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechh
Q 009641 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (530)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 207 (530)
.+.-....+|+|+|. .+. .++++..+++||+-+..
T Consensus 413 ----------------~~F~~~~~~vLv~T~-----~~~--~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 413 ----------------DEFARGEFNVLVATS-----VGE--EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp ----------------HHHHHTSCSEEEECG-----GGG--GGGGSTTCCEEEESSCC
T ss_pred ----------------HHHhcCCceEEEECC-----ccc--cCCCchhCCEEEEeCCC
Confidence 112224578999992 222 35778888888865543
No 264
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.56 E-value=0.51 Score=44.17 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.2
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999998654
No 265
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=75.49 E-value=0.72 Score=43.50 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCCCc--EEEECCCCchHHHHH
Q 009641 67 LFERD--LCINSPTGSGKTLSY 86 (530)
Q Consensus 67 ~~~~~--~li~apTGsGKT~~~ 86 (530)
+.|.| +++.++||||||.+.
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred hCCCEEEEEeECCCCCCCcEEE
Confidence 34766 778999999999863
No 266
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.47 E-value=1.5 Score=41.34 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4679999999999997643
No 267
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=75.42 E-value=2.3 Score=47.91 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=34.4
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
-+|.|..|||||.+.+--+...+..+ ..+.++|+|||... .-++.+.+...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~-~~~~~il~lVP~q~-TFt~~~rl~~~ 54 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA-PFGKPIIFLVPDQM-TFLMEYELAKT 54 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC-TTSSCEEEECCGGG-HHHHHHHHTCC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEecCcc-cHHHHHHHHHh
Confidence 37889999999998766666555553 34468999999864 33344444443
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=75.23 E-value=1.4 Score=37.51 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.6
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+++.||+|||||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467789999999999974
No 269
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=75.21 E-value=2 Score=36.42 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.+..+++.|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999764
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=75.05 E-value=1.6 Score=39.53 Aligned_cols=16 Identities=44% Similarity=0.223 Sum_probs=13.5
Q ss_pred cEEEECCCCchHHHHH
Q 009641 71 DLCINSPTGSGKTLSY 86 (530)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (530)
-+++.||||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999754
No 271
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.02 E-value=1.6 Score=39.40 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4569999999999997543
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=74.96 E-value=1.3 Score=37.07 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.0
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
-+++.||+|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 273
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=74.90 E-value=1.3 Score=42.14 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=18.4
Q ss_pred cCCCCCCCc--EEEECCCCchHHHHH
Q 009641 63 IGPGLFERD--LCINSPTGSGKTLSY 86 (530)
Q Consensus 63 ~~~~~~~~~--~li~apTGsGKT~~~ 86 (530)
+..++.|.| +++.++||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEec
Confidence 444556776 678999999999873
No 274
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=74.88 E-value=8.4 Score=36.89 Aligned_cols=74 Identities=11% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----cc-cCCCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT-RGMDVEG 403 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~-~GiDip~ 403 (530)
...++||.|+++..+..+.+.+.... ..+..+..++|+.+..+....+. ..+|+|+|.- +. ..+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 45689999999999999988887643 34578888999988766554443 4689999952 12 2355666
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777665
No 275
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.59 E-value=2.5 Score=41.19 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=15.9
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
.+.+|+.+|+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 578999999999999864
No 276
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=74.50 E-value=0.93 Score=44.59 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=23.8
Q ss_pred hhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHHH
Q 009641 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (530)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~~ 86 (530)
.-|.++++.+ +..++.|.| +++.|.||||||.+.
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4577766554 333446766 778999999999863
No 277
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=74.24 E-value=0.84 Score=42.92 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=22.8
Q ss_pred chhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 52 ~~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
..-|.+++..+ +..++.|.| +++.++||||||.+
T Consensus 55 ~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceE
Confidence 33466655543 233445766 77899999999987
No 278
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.10 E-value=2.1 Score=42.10 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.4
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
..+.+|+.||+|+|||+.+
T Consensus 242 pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCSEEEECSCTTSSHHHHH
T ss_pred CCCceEeeCCCCCcHHHHH
Confidence 3578999999999999864
No 279
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=73.98 E-value=0.89 Score=43.21 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=22.5
Q ss_pred hhhHHHHHHhc----CCCCCCCc--EEEECCCCchHHHHH
Q 009641 53 PVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (530)
Q Consensus 53 ~~Q~~a~~~~~----~~~~~~~~--~li~apTGsGKT~~~ 86 (530)
.-|.+++..+. ..++.|.| +++.|+||||||.+.
T Consensus 56 ~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 56 ETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp SCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34666555432 33445766 778999999999863
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=73.96 E-value=2.2 Score=35.64 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.3
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+..+++.||+|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999753
No 281
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=73.88 E-value=1.4 Score=41.90 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=18.4
Q ss_pred cCCCCCCCc--EEEECCCCchHHHHH
Q 009641 63 IGPGLFERD--LCINSPTGSGKTLSY 86 (530)
Q Consensus 63 ~~~~~~~~~--~li~apTGsGKT~~~ 86 (530)
+..++.|.| +++.++||||||.+.
T Consensus 78 v~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 78 VQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHCCcceeEEEeCCCCCCCceEe
Confidence 444556877 677999999999874
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=73.87 E-value=2.1 Score=36.99 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.9
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.|.-+.+.||+|||||...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999753
No 283
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=73.84 E-value=0.84 Score=43.58 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=14.6
Q ss_pred CCc--EEEECCCCchHHHH
Q 009641 69 ERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 69 ~~~--~li~apTGsGKT~~ 85 (530)
|.+ +++.|+||||||.+
T Consensus 83 G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp CCEEEEEEECCTTSSHHHH
T ss_pred CceeEEEeeCCCCCCCCEE
Confidence 666 68899999999986
No 284
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=73.84 E-value=0.92 Score=43.65 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=23.0
Q ss_pred chhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHHH
Q 009641 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (530)
Q Consensus 52 ~~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~~ 86 (530)
..-|.+++..+ +..++.|.| +++.++||||||.+.
T Consensus 112 ~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred CCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 34566655543 233445766 778999999999873
No 285
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=73.66 E-value=1.9 Score=41.21 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.2
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999998654
No 286
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=73.66 E-value=2.8 Score=36.36 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=37.5
Q ss_pred CCcEEEEcCChHHHHH-HHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec
Q 009641 332 EEKCIVFTSSVESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~-l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~ 393 (530)
..++||+|+++..+.. +.+.+......++.+..++|+.....+...+. +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 6789999999999888 66666665444578888888765432221111 2468899985
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=73.56 E-value=2.1 Score=36.89 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.7
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999753
No 288
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=73.38 E-value=3.8 Score=36.04 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.0
Q ss_pred cEEEECCCCchHHHHHHHHHHHHh
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l 94 (530)
++++.++.|+|||..++-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999987655444333
No 289
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=75.59 E-value=0.7 Score=38.86 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=49.9
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||.++++.-+..+++.++.. ++.+..++|+.+..+....+. +.-....+|+|+|.
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~-----------------~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIK-----------------RLTEGRVNVLVATD 88 (170)
Confidence 447999999999988888887765 678888888876544422211 11123468999992
Q ss_pred hHHHHHHhcCCCCCCCCccEEEEe
Q 009641 181 GRLMDHINATRGFTLEHLCYLVVD 204 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lViD 204 (530)
.+. .++++..+++||.-
T Consensus 89 -----~~~--~Gid~~~~~~Vi~~ 105 (170)
T 2yjt_D 89 -----VAA--RGIDIPDVSHVFNF 105 (170)
Confidence 222 35666677777753
No 290
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.00 E-value=2.2 Score=41.09 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=16.1
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 291
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=72.92 E-value=1.1 Score=42.70 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=23.9
Q ss_pred chhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 52 ~~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
..-|.+++..+ +..++.|.| +++.|+||||||.+
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceee
Confidence 34577666543 344556776 77899999999986
No 292
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=72.83 E-value=2.1 Score=38.06 Aligned_cols=33 Identities=12% Similarity=-0.139 Sum_probs=22.1
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHH
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIV 91 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l 91 (530)
++.++. .+..|.-+++.+|+|+|||..+...+.
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 344442 334567789999999999986544333
No 293
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=72.83 E-value=2.5 Score=43.60 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=13.9
Q ss_pred cEEEECCCCchHHHH
Q 009641 71 DLCINSPTGSGKTLS 85 (530)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (530)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 294
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.77 E-value=1.9 Score=40.45 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.8
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
+.+++.||||||||....
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999997543
No 295
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.76 E-value=1.9 Score=41.30 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|..+++.+|||||||..
T Consensus 174 ~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TTCCEEEEESSSSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 578999999999999974
No 296
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=72.64 E-value=1.8 Score=41.71 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.+..+++.+|||||||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999753
No 297
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=72.46 E-value=4.8 Score=34.53 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=28.5
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
...+++..++|.|||.+++-.++..+.. |.+|+|+-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~----G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH----GKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEE
Confidence 3579999999999999988777777654 44788883
No 298
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=72.32 E-value=2.2 Score=40.69 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=22.7
Q ss_pred hhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 54 VQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 54 ~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
-|.++++.+ +..++.|.| +++.++||||||.+
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 366666544 234456766 77899999999986
No 299
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=72.23 E-value=8.8 Score=40.75 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=54.8
Q ss_pred HhcCCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-c---------c
Q 009641 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M---------T 396 (530)
Q Consensus 328 ~~~~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-~---------~ 396 (530)
....+..++|.++|++.|.+.++.+.... ..++.+.++.|+++..+|.... ..+|+++|+- + .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 44567789999999999999988876542 2458899999999987665442 3789999971 1 1
Q ss_pred ---cCCCCCCCCEEEE
Q 009641 397 ---RGMDVEGVNNVVN 409 (530)
Q Consensus 397 ---~GiDip~~~~VI~ 409 (530)
..++...+.++|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 1356667776664
No 300
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.18 E-value=10 Score=38.27 Aligned_cols=74 Identities=11% Similarity=0.176 Sum_probs=48.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----cccC-C-CCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 403 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-i-Dip~ 403 (530)
..++||.+|++..+..+.+.+.... ..++.+..+||+.+...+...+. ...+|+|+|.- +..| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 6789999999999999988887642 12478999999986655433222 23789999962 2233 3 5667
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 887775
No 301
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=72.06 E-value=1 Score=43.08 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=23.6
Q ss_pred cchhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
+..-|.+++..+ +..++.|.| +++.|+||||||.+
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceE
Confidence 344566666543 233445766 77899999999986
No 302
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=71.94 E-value=1.9 Score=41.21 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.7
Q ss_pred CCcEEEECCCCchHHHH
Q 009641 69 ERDLCINSPTGSGKTLS 85 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~ 85 (530)
+..+++.||||||||..
T Consensus 123 ~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45789999999999975
No 303
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.93 E-value=0.97 Score=43.30 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=22.7
Q ss_pred chhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 52 ~~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
..-|.+++..+ +..++.|.| +++.|+||||||.+
T Consensus 79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34566655543 233445766 77899999999986
No 304
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=71.79 E-value=3.4 Score=38.93 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.9
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|..+++.+|||||||..
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999973
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=71.76 E-value=2.5 Score=35.95 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=13.9
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999753
No 306
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=71.58 E-value=0.99 Score=42.90 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=23.6
Q ss_pred cchhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
+..-|.+++..+ +..++.|.| +++.|+||||||.+
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEE
Confidence 344566666543 233445766 77899999999986
No 307
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=71.54 E-value=2.1 Score=40.39 Aligned_cols=16 Identities=44% Similarity=0.403 Sum_probs=13.9
Q ss_pred cEEEECCCCchHHHHH
Q 009641 71 DLCINSPTGSGKTLSY 86 (530)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (530)
-++|.||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999754
No 308
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=71.45 E-value=3.1 Score=39.27 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.9
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
...+++.||+|+|||..+.
T Consensus 55 ~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3579999999999998643
No 309
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=71.29 E-value=1.5 Score=39.83 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=15.8
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4569999999999998643
No 310
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.20 E-value=2.3 Score=40.66 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.1
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 311
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=71.02 E-value=3.9 Score=47.22 Aligned_cols=52 Identities=17% Similarity=0.035 Sum_probs=34.8
Q ss_pred CCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
+-+|+-+.+.+|.|||||..++..+.+.-. .+..++++.+-.+|-... ++++
T Consensus 1428 ~prg~~iei~g~~~sGkttl~~~~~a~~~~----~g~~~~~i~~e~~~~~~~---~~~~ 1479 (1706)
T 3cmw_A 1428 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHALDPIY---ARKL 1479 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEECTTSCCCHHH---HHHT
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHh----cCCeEEEEecCCCCCHHH---HHHc
Confidence 334577999999999999876554444333 344789998876665443 4554
No 312
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=70.95 E-value=5.1 Score=44.45 Aligned_cols=77 Identities=8% Similarity=0.264 Sum_probs=56.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CCcc----eEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-cccCC-CCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRI----KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGM-DVEG 403 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~----~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-~~~Gi-Dip~ 403 (530)
.+.++||.+|++..+..+++.+.... ..+. .+..+||+.+...+....+.++. .+|+|+|+- +..-+ .+..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 45789999999999999999887653 2345 78899999999888877777777 899999971 11111 1445
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 666554
No 313
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=70.80 E-value=3.6 Score=39.05 Aligned_cols=53 Identities=11% Similarity=-0.101 Sum_probs=30.5
Q ss_pred HHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcC--CCcccEEEEcCcH
Q 009641 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTR 111 (530)
Q Consensus 59 ~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~--~~~~~~lil~Pt~ 111 (530)
++.++. .+..|.-+++.||+|+|||..+...+........ ..+.+++|+.-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 445553 3444566899999999999865443333222100 0234688886543
No 314
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=70.76 E-value=2.3 Score=35.30 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.1
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.|++|||||.+.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 315
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=70.60 E-value=1.1 Score=42.87 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=22.7
Q ss_pred chhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 52 ~~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
..-|.+++..+ +..++.|.| +++.++||||||.+
T Consensus 66 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred cCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceE
Confidence 34466655543 233445766 77899999999986
No 316
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=70.28 E-value=2.4 Score=35.51 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.6
Q ss_pred cEEEECCCCchHHHHH
Q 009641 71 DLCINSPTGSGKTLSY 86 (530)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (530)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999754
No 317
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=70.26 E-value=1.2 Score=42.47 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=22.6
Q ss_pred hhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
.-|.+++..+ +..++.|.| +++.++||||||.+
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred ccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceE
Confidence 3466655443 334446766 67899999999987
No 318
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=69.91 E-value=2.1 Score=41.37 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=13.9
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
-++|.||||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 46889999999997643
No 319
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=69.90 E-value=3 Score=36.56 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.7
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477899999999999974
No 320
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=69.85 E-value=1.1 Score=43.56 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=22.5
Q ss_pred chhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 52 ~~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
..-|.+++..+ +..++.|.| +++.|.||||||.+
T Consensus 132 ~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred CCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeE
Confidence 34566655543 233445766 77899999999987
No 321
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=69.68 E-value=2.8 Score=36.10 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.8
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.+..+++.||+|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999754
No 322
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=69.61 E-value=1.7 Score=41.62 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=23.3
Q ss_pred chhhHHHHHH---hcCCCCCCCc--EEEECCCCchHHHH
Q 009641 52 FPVQVAVWQE---TIGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 52 ~~~Q~~a~~~---~~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
..-|.+++.. ++..++.|.| +++.++||||||.+
T Consensus 94 ~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 94 GSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp TCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred cccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceE
Confidence 3456655543 3344556766 77799999999986
No 323
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=69.57 E-value=9.6 Score=40.44 Aligned_cols=60 Identities=8% Similarity=-0.042 Sum_probs=45.9
Q ss_pred HhcCCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec
Q 009641 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (530)
Q Consensus 328 ~~~~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~ 393 (530)
....+.+++|.++|++.|...++.+.... ..++.+..+.|+++...|.... .++|+|+|+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 34456789999999999999988876542 2357899999999876554433 379999997
No 324
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=69.52 E-value=1.1 Score=42.62 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=21.9
Q ss_pred hhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 54 VQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 54 ~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
-|.+++..+ +..++.|.| +++.++||||||.+
T Consensus 83 sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 83 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceE
Confidence 466655543 233445766 67799999999986
No 325
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=69.43 E-value=2.7 Score=35.63 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.2
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+..+++.|++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 326
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=69.27 E-value=5.6 Score=33.23 Aligned_cols=25 Identities=20% Similarity=-0.017 Sum_probs=17.0
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
-+.+.++.|||||... .-++..+..
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhHh
Confidence 4678999999999743 334444443
No 327
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=69.25 E-value=3.2 Score=37.29 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.4
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
+.+++.+|+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999753
No 328
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=69.10 E-value=3.7 Score=35.75 Aligned_cols=31 Identities=23% Similarity=-0.012 Sum_probs=22.0
Q ss_pred chhhHHHHHHhcCCCCCCCcEEEECCCCchHHHHH
Q 009641 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (530)
+.-|..++..+ ..|.-+.+.+|.|+|||..+
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHH
Confidence 33455665554 24777889999999999754
No 329
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=69.06 E-value=1.1 Score=42.90 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=22.1
Q ss_pred hhhHHHHHHh----cCCCCCCCc--EEEECCCCchHHHH
Q 009641 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~li~apTGsGKT~~ 85 (530)
.-|.+++..+ +..++.|.| +++.++||||||.+
T Consensus 79 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 79 SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCccee
Confidence 3466665543 233345766 77899999999986
No 330
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=69.02 E-value=18 Score=36.46 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeec--------CCchHHHHHHHhhc
Q 009641 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELIKR 151 (530)
Q Consensus 80 sGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~~~~~ 151 (530)
++|..... -++....... .+.++||.|+++.-+..+++.++......++.+..++| +.+..++.
T Consensus 370 ~~k~~~l~-~~l~~~~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~------ 441 (555)
T 3tbk_A 370 NPKLRDLY-LVLQEEYHLK-PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQK------ 441 (555)
T ss_dssp CHHHHHHH-HHHHHHHHHC-TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred CHHHHHHH-HHHHHHhccC-CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHH------
Confidence 67765433 3333332211 34589999999999999999999875444466666666 33222221
Q ss_pred CccccCccCCchhHHHhhc--CCCcEEEeCChHHHHHHhcCCCCCCCCccEEEE
Q 009641 152 PKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~--~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
.....+. ...+|+|+|. .+. .++++..+++||.
T Consensus 442 ------------~~~~~F~~~g~~~vLvaT~-----~~~--~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 442 ------------CVLEAFRASGDNNILIATS-----VAD--EGIDIAECNLVIL 476 (555)
T ss_dssp ----------------------CCSEEEECC-----CTT--CCEETTSCSEEEE
T ss_pred ------------HHHHHHhcCCCeeEEEEcc-----hhh--cCCccccCCEEEE
Confidence 1222223 3478999993 222 4678888998885
No 331
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=68.88 E-value=12 Score=40.05 Aligned_cols=77 Identities=9% Similarity=0.089 Sum_probs=55.4
Q ss_pred HHhcCCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-c-----c---
Q 009641 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T--- 396 (530)
Q Consensus 327 l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-~-----~--- 396 (530)
+....+.+++|.++|+..|.+.++.+.... .+++.+.++.|+++..+|.... .++|+++|+- + .
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhh
Confidence 445567789999999999999988876542 2458899999999987665543 3789999962 1 1
Q ss_pred ----cCCCCCCCCEEEE
Q 009641 397 ----RGMDVEGVNNVVN 409 (530)
Q Consensus 397 ----~GiDip~~~~VI~ 409 (530)
..++...+.++|.
T Consensus 221 ~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp CSSGGGCCCCCCCEEEE
T ss_pred hccHhhhccCCCCEEEE
Confidence 1355666776664
No 332
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=68.87 E-value=2.6 Score=40.86 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=16.2
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998643
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=68.72 E-value=2.7 Score=36.42 Aligned_cols=21 Identities=33% Similarity=0.164 Sum_probs=16.2
Q ss_pred CCCCCcEEEECCCCchHHHHH
Q 009641 66 GLFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~ 86 (530)
+..+.-+.+.|++|||||..+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 334566889999999999753
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=68.69 E-value=2.1 Score=36.22 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
|..+++.|++|||||...-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5568999999999997643
No 335
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=68.58 E-value=3.4 Score=35.49 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.+..+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999764
No 336
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=68.27 E-value=2 Score=36.01 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=15.5
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.|.-+.+.||+|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3566889999999999754
No 337
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.25 E-value=1.8 Score=44.73 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.1
Q ss_pred CCCCcEEEECCCCchHHHHH
Q 009641 67 LFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 67 ~~~~~~li~apTGsGKT~~~ 86 (530)
..+..+++.+|+|+|||..+
T Consensus 58 ~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEEeCCCCCHHHHH
Confidence 35789999999999999754
No 338
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=68.23 E-value=2.6 Score=37.08 Aligned_cols=22 Identities=23% Similarity=-0.064 Sum_probs=17.0
Q ss_pred CCCCCcEEEECCCCchHHHHHH
Q 009641 66 GLFERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 66 ~~~~~~~li~apTGsGKT~~~~ 87 (530)
+..|.-+.+.+|+|+|||....
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 3346678899999999997543
No 339
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=68.17 E-value=11 Score=37.18 Aligned_cols=69 Identities=19% Similarity=0.066 Sum_probs=46.8
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||+||++.-+.++++.++.. ++++..++|.... ... ...-....+|+|+|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~--------------------~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REY--------------------PTIKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC-----------------------------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHH--------------------hhhcCCCceEEEECC
Confidence 347999999999999999998876 6889999983211 110 111224579999993
Q ss_pred hHHHHHHhcCCCCCCCCccEEE
Q 009641 181 GRLMDHINATRGFTLEHLCYLV 202 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lV 202 (530)
.+. .++++. +++||
T Consensus 232 -----v~e--~GiDip-v~~VI 245 (440)
T 1yks_A 232 -----IAE--MGANLC-VERVL 245 (440)
T ss_dssp -----STT--CCTTCC-CSEEE
T ss_pred -----hhh--eeeccC-ceEEE
Confidence 222 457777 88877
No 340
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=68.17 E-value=16 Score=35.18 Aligned_cols=76 Identities=9% Similarity=0.162 Sum_probs=53.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----cccc-CCCCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 403 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiDip~ 403 (530)
...++||.++++..+..+++.+...+ ..+..+...+|+.... ...+.+..+..+|+|+|. .+.. .++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR---AEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHH---HHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchH---HHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45689999999999999999887653 2345677777776543 334556668889999995 2222 355666
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 776665
No 341
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=68.15 E-value=11 Score=34.93 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=51.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----ccc-CCCCCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR-GMDVEGV 404 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~-GiDip~~ 404 (530)
+.++||.+|++..+..+++.+...+ ..+..+..++|+.+....... +. ..+|+|+|.- +.. .+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 6789999999999999999988653 335678889998886554333 22 3789999952 122 3456666
Q ss_pred CEEEE
Q 009641 405 NNVVN 409 (530)
Q Consensus 405 ~~VI~ 409 (530)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 76664
No 342
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=67.77 E-value=2.7 Score=35.16 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.2
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+..+++.+|+|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556889999999999754
No 343
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=67.76 E-value=3.4 Score=40.11 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=16.5
Q ss_pred CCCCCc--EEEECCCCchHHHHH
Q 009641 66 GLFERD--LCINSPTGSGKTLSY 86 (530)
Q Consensus 66 ~~~~~~--~li~apTGsGKT~~~ 86 (530)
++.|.| +++.|+||||||.+.
T Consensus 136 ~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 136 SLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHTTCCEEEEEESCTTSSHHHHH
T ss_pred HhCCcceEEEEECCCCCCCceEe
Confidence 345766 678999999999874
No 344
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=67.65 E-value=5.8 Score=41.73 Aligned_cols=78 Identities=14% Similarity=0.289 Sum_probs=50.1
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHh--ccccCceEEEeecC--------CchHHHHHHHhhcCccccCccCCchhHHHhhc
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAI--APAVGLSVGLAVGQ--------SSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~--~~~~~~~v~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (530)
+.++||.++++..+..+++.|... +...|+++..++|+ .+..++... .+.+.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~------------------~~~F~ 461 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEV------------------ISKFR 461 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHH------------------HHHHC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHH------------------HHHHh
Confidence 558999999999999999988865 22336888999998 655544322 22222
Q ss_pred -CCCcEEEeCChHHHHHHhcCCCCCCCCccEEEE
Q 009641 171 -SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 171 -~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
...+|+|+|- .+. .++++..+++||.
T Consensus 462 ~g~~~VLVaT~-----~~~--~GIDip~v~~VI~ 488 (699)
T 4gl2_A 462 TGKINLLIATT-----VAE--EGLDIKECNIVIR 488 (699)
T ss_dssp C---CCSEEEC-----SCC--TTSCCCSCCCCEE
T ss_pred cCCCcEEEEcc-----ccc--cCCccccCCEEEE
Confidence 3478999993 222 4678888888884
No 345
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=67.45 E-value=3.7 Score=37.54 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.4
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
+.+++.+|+|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45999999999999753
No 346
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=67.42 E-value=3.6 Score=34.80 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=21.6
Q ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHH
Q 009641 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~ 112 (530)
++|.+++|||||.-+.- +... +.+++|++....
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~---~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD---APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS---CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHH-----HHhc---CCCeEEEecCCC
Confidence 68999999999964322 2221 336888887544
No 347
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=67.38 E-value=2.9 Score=41.38 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
.+.+++.||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 348
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=67.35 E-value=3.4 Score=36.26 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=15.6
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
+.+-+++.+|+||||+..+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34567889999999987643
No 349
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=67.13 E-value=4 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=14.6
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.|.+|+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678999999999964
No 350
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=67.04 E-value=3.2 Score=34.40 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.5
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
+++++.++.|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999998654
No 351
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=66.99 E-value=6.6 Score=33.12 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.+..+++.+++|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35568899999999997644
No 352
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.80 E-value=2.5 Score=39.52 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=16.0
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
...+++.||+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 353
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=66.76 E-value=3.1 Score=35.34 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.5
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
+.-+++.|++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 354
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=66.69 E-value=3.5 Score=36.22 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.8
Q ss_pred CCCCcEEEECCCCchHHHH
Q 009641 67 LFERDLCINSPTGSGKTLS 85 (530)
Q Consensus 67 ~~~~~~li~apTGsGKT~~ 85 (530)
..|.-+++.||+|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3577889999999999974
No 355
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=66.07 E-value=3.4 Score=39.01 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.8
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999754
No 356
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=66.06 E-value=3.7 Score=35.53 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.5
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|+|||..
T Consensus 19 ~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477788999999999974
No 357
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=65.85 E-value=3.2 Score=35.74 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.+.-+.+.+|+|||||..+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678899999999997643
No 358
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=65.80 E-value=1.8 Score=39.75 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=19.6
Q ss_pred CCCCCCcEEEECCCCchHHHHHHHHH
Q 009641 65 PGLFERDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~~~~~~ 90 (530)
.+..|.-+++.+|+|+|||..+...+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 33457789999999999998654433
No 359
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.76 E-value=4.6 Score=38.63 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=18.4
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHh
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l 94 (530)
+..+++.||+|+|||...-. +...+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~-l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF-VLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH-HHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 56899999999999976433 33333
No 360
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=65.57 E-value=3.8 Score=34.27 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.5
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.+++|||||..+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68999999999997643
No 361
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=65.56 E-value=3.6 Score=39.97 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=15.6
Q ss_pred CCCCc--EEEECCCCchHHHH
Q 009641 67 LFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 67 ~~~~~--~li~apTGsGKT~~ 85 (530)
+.|.| +++.|+||||||.+
T Consensus 135 l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 135 LDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HTTCCEEEEEESSTTSSHHHH
T ss_pred HCCCceEEEEecCCCCCCeeE
Confidence 35766 67899999999987
No 362
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.47 E-value=3.3 Score=36.50 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.3
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
...+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999754
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=65.01 E-value=3.9 Score=35.73 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
+..+++.|++|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4678999999999997643
No 364
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=64.94 E-value=4.4 Score=36.99 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.5
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
+.+++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 45999999999999753
No 365
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=64.92 E-value=2.6 Score=42.07 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.6
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
...++++.||+|+|||..+-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34689999999999998654
No 366
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=64.91 E-value=15 Score=39.35 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=48.0
Q ss_pred HHhcCCCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec
Q 009641 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (530)
Q Consensus 327 l~~~~~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~ 393 (530)
+....+.+++|.++|+..|...++.+.... ..++.+..+.|+++..+|.... .++|+++|+
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 445567789999999999999988876542 3458899999999987766654 379999996
No 367
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=64.72 E-value=4.3 Score=34.20 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
..+++.+++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999998643
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=64.59 E-value=3.6 Score=35.00 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.+..+++.|++|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999998643
No 369
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.54 E-value=4.3 Score=39.87 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999754
No 370
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=64.53 E-value=4.3 Score=40.64 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=16.6
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
....+++.||+|+|||..+-
T Consensus 237 ~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHH
Confidence 35679999999999998643
No 371
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=64.47 E-value=3.7 Score=35.33 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.1
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
.-+++.|++|||||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 372
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=64.16 E-value=49 Score=29.80 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=42.6
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHH
Q 009641 77 PTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (530)
Q Consensus 77 pTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~ 145 (530)
...+||..+ +.-++..+.. .+.++||.+.++..+..+.+.+... .++.+..++|+.+..+..
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERD 153 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHH
Confidence 356888764 3334444433 3448999999999888888877763 257778889988765553
No 373
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=64.15 E-value=3.3 Score=39.53 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.5
Q ss_pred CCCCc--EEEECCCCchHHHH
Q 009641 67 LFERD--LCINSPTGSGKTLS 85 (530)
Q Consensus 67 ~~~~~--~li~apTGsGKT~~ 85 (530)
+.|.| +++.|+||||||.+
T Consensus 76 l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 76 VDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HTTCEEEEEEEECTTSSHHHH
T ss_pred hcCCceEEEEECCCCCCCeEe
Confidence 35766 67799999999986
No 374
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=64.04 E-value=3.1 Score=36.82 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=11.6
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.|.-+.+.||+|||||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667889999999999753
No 375
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=63.81 E-value=4.5 Score=34.72 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.5
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
+..+++.+++|||||..+-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 376
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=63.72 E-value=3.9 Score=35.58 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.2
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.||+|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 377
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=63.60 E-value=4 Score=34.61 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=14.3
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
.-+++.+|+|+|||...-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 346889999999997543
No 378
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.53 E-value=2.7 Score=39.80 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.6
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
...+++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3569999999999997543
No 379
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=63.47 E-value=8.8 Score=35.56 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=21.1
Q ss_pred HHHHHhcCCCCCCCcEEEECCCCchHHHH
Q 009641 57 AVWQETIGPGLFERDLCINSPTGSGKTLS 85 (530)
Q Consensus 57 ~a~~~~~~~~~~~~~~li~apTGsGKT~~ 85 (530)
.++..+--.+..|.-+.|.+|+|+|||..
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHH
Confidence 45544444455678899999999999964
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=63.43 E-value=4.5 Score=35.42 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.8
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
...+++.|++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 381
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=63.39 E-value=3.6 Score=34.97 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.3
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
+..+++.|++|||||..+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999997643
No 382
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.21 E-value=4.9 Score=35.77 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=49.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----ccc---CCCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR---GMDVE 402 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~---GiDip 402 (530)
+.++||.+++++.+..+++.+.... ..++.+..++|+.....+ ......+..+|+|+|.- +.. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 4479999999999999999887653 234667777765322111 11223556789999951 212 47777
Q ss_pred CCCEEEE
Q 009641 403 GVNNVVN 409 (530)
Q Consensus 403 ~~~~VI~ 409 (530)
++++||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8887765
No 383
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=63.07 E-value=4.3 Score=34.29 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.3
Q ss_pred cEEEECCCCchHHHHH
Q 009641 71 DLCINSPTGSGKTLSY 86 (530)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (530)
.+.+.+|+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999753
No 384
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.07 E-value=4.6 Score=32.87 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=13.1
Q ss_pred cEEEECCCCchHHHH
Q 009641 71 DLCINSPTGSGKTLS 85 (530)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (530)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999975
No 385
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=63.06 E-value=4.6 Score=33.51 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=14.8
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
+.+++.+++|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999997643
No 386
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.05 E-value=7.4 Score=44.98 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=33.2
Q ss_pred HHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCc
Q 009641 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (530)
Q Consensus 59 ~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt 110 (530)
++.++. .+..+..+++.+|+|+|||..++..+.+.+.. +.+++|++-.
T Consensus 22 LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~----G~~vlYI~te 71 (1706)
T 3cmw_A 22 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 71 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTT
T ss_pred HHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC----CCceEEEEec
Confidence 444443 34457889999999999998766655555543 3468888744
No 387
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=63.02 E-value=6.1 Score=35.45 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.9
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+..+++.|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999754
No 388
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=62.78 E-value=2.8 Score=38.64 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.8
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+.-+++.||+|||||..+
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999754
No 389
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=62.65 E-value=4.3 Score=35.25 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=13.9
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.+|+||||+..+-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997643
No 390
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=62.56 E-value=4.2 Score=35.37 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.1
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.||+|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 391
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=62.44 E-value=7 Score=37.52 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCCCCCcEEEECCCCchHHHHHH
Q 009641 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 56 ~~a~~~~~~~~~~~~~~li~apTGsGKT~~~~ 87 (530)
.++++- +-++-+|+.+.+.+|+|+|||....
T Consensus 162 iraID~-~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 162 ARVLDL-ASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHH-HSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ceeeee-eeeecCCcEEEEecCCCCChhHHHH
Confidence 345554 4456679999999999999997654
No 392
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=62.39 E-value=33 Score=36.41 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=54.0
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhc-------cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIA-------PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (530)
+.++||.+|++.-+.++++.+.+.+ ...++.+..++|+.+..++...+..-+.. ..-....
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~------------~~~~g~~ 370 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES------------HNGRPGR 370 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC------------SSSSCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc------------cCCCCce
Confidence 4489999999999999999888632 22478899999998876653322110000 0001346
Q ss_pred cEEEeCChHHHHHHhcCCCCCCCCccEEEE
Q 009641 174 DILVATPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 174 ~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
.|+|+|. .+.. ++++..+++||-
T Consensus 371 kVlVAT~-----iae~--GidIp~v~~VId 393 (773)
T 2xau_A 371 KVVISTN-----IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp EEEEECT-----HHHH--TCCCTTEEEEEE
T ss_pred EEEEeCc-----HHHh--CcCcCCeEEEEe
Confidence 8999993 3332 467777887773
No 393
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=61.83 E-value=5.8 Score=37.12 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.9
Q ss_pred cEEEECCCCchHHHH
Q 009641 71 DLCINSPTGSGKTLS 85 (530)
Q Consensus 71 ~~li~apTGsGKT~~ 85 (530)
-+++.++.|||||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 468899999999974
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=61.69 E-value=5.2 Score=35.92 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=16.7
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
+..+++.+++|||||.+.-
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 7889999999999997643
No 395
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=61.63 E-value=4.9 Score=35.52 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.8
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
+..+++.+++|||||...-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 396
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=61.27 E-value=5.5 Score=38.60 Aligned_cols=42 Identities=10% Similarity=-0.164 Sum_probs=24.8
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhhc--CCCcccEEEEcC
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLP 109 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~~--~~~~~~~lil~P 109 (530)
.|.-+.|.+|+|+|||......++..+... ...+.+++|+.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 456688999999999976543333322211 002345777754
No 397
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=60.94 E-value=4.2 Score=34.43 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.0
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.|++|||||...-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 398
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.89 E-value=4.4 Score=40.94 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.5
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
+.+++.||+|+|||..+.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 579999999999998643
No 399
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=60.87 E-value=5 Score=34.65 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.5
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.+.-+++.|+.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46678999999999998654
No 400
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=60.73 E-value=4.4 Score=34.95 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
+.-+++.|++|||||...-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 5568899999999998643
No 401
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=60.61 E-value=8.4 Score=36.03 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=21.7
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+-+.+.+++|+|||......+. .+.. .+.+++++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~-~l~~---~g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMAN-YYAE---LGYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH---CCCeEEEEe
Confidence 4577899999999976544332 2322 233666663
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=60.54 E-value=4.6 Score=33.88 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.6
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.|..+++.+++|||||.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566889999999999754
No 403
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=60.47 E-value=7.8 Score=45.55 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=37.4
Q ss_pred HHHHhcC--CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHH
Q 009641 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (530)
Q Consensus 58 a~~~~~~--~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (530)
.++.++. .+..+.++++.+|+|+|||..+...+.+.... +.+++|++-. ++.+++.
T Consensus 1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~----Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTT-SCCCHHH
T ss_pred HHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEcc-ccHHHHH
Confidence 3445553 45567899999999999998776666655544 4468888643 4444444
No 404
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=60.34 E-value=4.6 Score=34.43 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+.-+++.|++|||||...
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456889999999999764
No 405
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=60.33 E-value=12 Score=33.64 Aligned_cols=61 Identities=8% Similarity=-0.079 Sum_probs=34.1
Q ss_pred HHHhcCC-CCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHh
Q 009641 59 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (530)
Q Consensus 59 ~~~~~~~-~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~ 124 (530)
+++++.. +.+|..+++.+.+|+|||...+-.+.+.+.. +-+++|++-. +-..++.+.++.+
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~----Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS----DNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT----TCEEEEEECS-SCHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC----CCcEEEEEEe-CCHHHHHHHHHHc
Confidence 3445543 3456778888777777773333334444433 3368887753 3344456666665
No 406
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=60.31 E-value=18 Score=38.63 Aligned_cols=74 Identities=11% Similarity=0.176 Sum_probs=48.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcC-CCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEecc-----cccC-C-CCCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 403 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-i-Dip~ 403 (530)
+.++||.||++..+..+.+.+.... ..++.+..+||+.+...+...+. +..+|+|+|.- +..+ + ++..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 6789999999999999888887652 12488999999987655433222 35789999952 2223 3 5566
Q ss_pred CCEEEE
Q 009641 404 VNNVVN 409 (530)
Q Consensus 404 ~~~VI~ 409 (530)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 407
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=60.19 E-value=4.5 Score=34.23 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.7
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
..+++.|++|||||.+.-
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999998643
No 408
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=59.77 E-value=5 Score=35.15 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.8
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
..+.+.||+|||||..+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997543
No 409
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=59.67 E-value=4.5 Score=33.98 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=11.6
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
+..+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 410
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=59.55 E-value=5.9 Score=39.41 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=15.4
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
.+.+++.+|+|+|||..+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999864
No 411
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=59.55 E-value=31 Score=34.37 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=50.5
Q ss_pred cEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCChH
Q 009641 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (530)
Q Consensus 103 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~ 182 (530)
..++++.+..-+..+.+.+.+. +.++..++|+.+..+....+ ........+|+|+|+..
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~-----------------~~f~~g~~~vLv~T~~~ 407 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMK-----------------TLAENGKGIIIVASYGV 407 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHH-----------------HHHHHCCSCEEEEEHHH
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHH-----------------HHHhCCCCCEEEEEcCh
Confidence 4445555566565566666554 45889999988765543221 11223557899999666
Q ss_pred HHHHHhcCCCCCCCCccEEEEechh
Q 009641 183 LMDHINATRGFTLEHLCYLVVDETD 207 (530)
Q Consensus 183 l~~~l~~~~~~~~~~~~~lViDEah 207 (530)
+- .++++..+++||+..+.
T Consensus 408 ~~------~GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 408 FS------TGISVKNLHHVVLAHGV 426 (510)
T ss_dssp HH------HSCCCCSEEEEEESSCC
T ss_pred hh------cccccccCcEEEEeCCC
Confidence 53 35778889999988776
No 412
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=59.50 E-value=6.1 Score=33.72 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=14.5
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
.-+.+.+|+|+|||...-
T Consensus 2 ~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCEEEESCCSSCHHHHHH
T ss_pred CEEEEECCCCChHHHHHH
Confidence 457899999999997543
No 413
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=59.47 E-value=7 Score=37.54 Aligned_cols=22 Identities=27% Similarity=0.125 Sum_probs=17.4
Q ss_pred CCCCCCcEEEECCCCchHHHHH
Q 009641 65 PGLFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 65 ~~~~~~~~li~apTGsGKT~~~ 86 (530)
.+..++.+++.||+|+|||...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3445678999999999999753
No 414
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=59.16 E-value=2.1 Score=45.73 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.8
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998654
No 415
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=58.94 E-value=5.5 Score=32.85 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.1
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.+++|||||.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 416
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=58.78 E-value=8.1 Score=39.24 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.6
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.+..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999754
No 417
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=58.60 E-value=5.3 Score=33.54 Aligned_cols=16 Identities=31% Similarity=0.189 Sum_probs=13.5
Q ss_pred cEEEECCCCchHHHHH
Q 009641 71 DLCINSPTGSGKTLSY 86 (530)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (530)
-.+|.+|+|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5789999999999753
No 418
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=58.45 E-value=5.8 Score=34.26 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=16.5
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.+.-+++.|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998654
No 419
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=58.36 E-value=5.6 Score=34.13 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.2
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
..+++.|++|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999754
No 420
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=58.26 E-value=4.7 Score=34.86 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=14.4
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+.-+.+.||+|||||..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445779999999999753
No 421
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=58.25 E-value=5.4 Score=38.26 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.5
Q ss_pred cEEEECCCCchHHHHH
Q 009641 71 DLCINSPTGSGKTLSY 86 (530)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (530)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 422
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=58.07 E-value=5 Score=34.99 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.4
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
+..+++.+++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3568999999999997643
No 423
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=58.01 E-value=46 Score=33.22 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=22.9
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcC
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~P 109 (530)
.+++.+++|+|||..+...+ ..+.. .+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~---~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQR---KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH---TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHh---CCCeEEEEec
Confidence 57889999999998654433 33333 2446777663
No 424
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=57.89 E-value=11 Score=35.30 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=12.8
Q ss_pred EEEECCCCchHHHHH
Q 009641 72 LCINSPTGSGKTLSY 86 (530)
Q Consensus 72 ~li~apTGsGKT~~~ 86 (530)
+.+.||+|||||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 668999999999753
No 425
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=57.85 E-value=5.6 Score=34.01 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.5
Q ss_pred cEEEECCCCchHHHHH
Q 009641 71 DLCINSPTGSGKTLSY 86 (530)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (530)
.+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999754
No 426
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=57.85 E-value=9.1 Score=37.50 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=23.0
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
..+++.+++|+|||..+...+.. +.. .+.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~-l~~---~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY-IQK---RGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH-HHH---HHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH---cCCeEEEEe
Confidence 46889999999999865543332 322 234677765
No 427
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=57.83 E-value=9.7 Score=40.50 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.6
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
.+.+|+.+|+|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 467999999999999754
No 428
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=57.78 E-value=4.3 Score=34.02 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=13.1
Q ss_pred cEEEECCCCchHHHHH
Q 009641 71 DLCINSPTGSGKTLSY 86 (530)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (530)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999754
No 429
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=57.49 E-value=4.7 Score=35.84 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=15.0
Q ss_pred CCCcEEEECCCCchHHH
Q 009641 68 FERDLCINSPTGSGKTL 84 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~ 84 (530)
.|.-+.+.+|+|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778899999999996
No 430
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=57.47 E-value=5.4 Score=35.61 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~ 87 (530)
+..+++.||+|||||..+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 431
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=57.45 E-value=7.7 Score=39.21 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=30.2
Q ss_pred HHHHhcC-CCCCCCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 58 a~~~~~~-~~~~~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+++.+.- .+..|.-+++.+|+|||||......++.-+... +...+++.
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~---~~g~i~v~ 75 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF---DEPGVFVT 75 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH---CCCEEEEE
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEEE
Confidence 4555444 455678899999999999986554334444431 11356664
No 432
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=57.28 E-value=12 Score=31.30 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=16.8
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhh
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLS 95 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~ 95 (530)
.-+++.++.|+|||.. +..++..+.
T Consensus 7 ~~i~i~G~sGsGKTTl-~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL-LKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHH-HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHH-HHHHHHhcc
Confidence 3578899999999974 333444443
No 433
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=57.26 E-value=5.9 Score=34.10 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.4
Q ss_pred cEEEECCCCchHHHHH
Q 009641 71 DLCINSPTGSGKTLSY 86 (530)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (530)
.+.+.||.|||||.+.
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999754
No 434
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=57.14 E-value=12 Score=34.76 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=22.1
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+.-+.+.+|+|+|||...- .+..+... .+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~--~Lagll~~--~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA--KLGRYYQN--LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH--HHHHHHHT--TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHH--HHHHHHHh--cCCEEEEEe
Confidence 4557789999999997543 34334332 233555553
No 435
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=56.95 E-value=35 Score=35.60 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=54.2
Q ss_pred cEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc---CCCcEEEeC
Q 009641 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ---SAVDILVAT 179 (530)
Q Consensus 103 ~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Ili~T 179 (530)
..+|+++++.-+.++++.+.+. ++.+..++|+.+..+..... +.+. ...+|+|+|
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~------------------~~F~~~~g~~~VLVAT 379 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQA------------------KKFNDPNDPCKILVAT 379 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHH------------------HHHHCTTSSCCEEEEC
T ss_pred CCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHH------------------HHHHccCCCeEEEEeC
Confidence 3577799998888888888874 68899999999866543221 1122 347999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEEEechhHh
Q 009641 180 PGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lViDEah~~ 209 (530)
- .+. .++++ .+++||+-.....
T Consensus 380 d-----i~e--~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 380 D-----AIG--MGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp G-----GGG--SSCCC-CBSEEEESCSBC-
T ss_pred c-----HHH--CCcCc-CccEEEECCcccc
Confidence 3 333 45778 8999998777543
No 436
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=56.95 E-value=18 Score=37.80 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=43.1
Q ss_pred CcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeec--------CCchHHHHHHHhhcCccccCccCCchhHHHhhc-
Q 009641 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELIKRPKLEAGICYDPEDVLQELQ- 170 (530)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (530)
.+.++||.++++.-+..+++.++......++++..++| +.+..++. ...+.+.
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~------------------~v~~~F~~ 458 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK------------------CILDAFKA 458 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------------------------
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHH------------------HHHHHHHh
Confidence 34589999999999999999998864333467777765 33322221 1122222
Q ss_pred -CCCcEEEeCChHHHHHHhcCCCCCCCCccEEEE
Q 009641 171 -SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 171 -~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
...+|+|+|- .+. .++++..+++||.
T Consensus 459 ~g~~~vLVaT~-----v~~--~GiDip~v~~VI~ 485 (696)
T 2ykg_A 459 SGDHNILIATS-----VAD--EGIDIAQCNLVIL 485 (696)
T ss_dssp --CCSCSEEEE-----SSC--CC---CCCSEEEE
T ss_pred cCCccEEEEec-----hhh--cCCcCccCCEEEE
Confidence 3568999992 222 4678888898885
No 437
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=56.81 E-value=5.9 Score=36.98 Aligned_cols=23 Identities=17% Similarity=-0.034 Sum_probs=17.3
Q ss_pred CCCcEEEECCCCchHHHHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYALPI 90 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~ 90 (530)
.+..+++.+|+|+|||..+...+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34567999999999997654433
No 438
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=56.56 E-value=12 Score=34.56 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
|.-+.+.+|+|+|||...-. +..+... .+.++++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~--Lag~l~~--~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGK--LAHRLKN--EGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHH--HHHHHHH--TTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHH--HHHHHHH--cCCeEEEEe
Confidence 44577999999999976433 3333332 233566654
No 439
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=56.54 E-value=11 Score=27.88 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=30.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~ 370 (530)
..++++||.+-..+...+..|...| +++..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNG---VNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCC---CCEEEecccHH
Confidence 5689999999988999999998776 68888888864
No 440
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=56.54 E-value=11 Score=28.59 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=31.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~ 370 (530)
...++++||.+-..+...+..|...| +++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G---~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLG---LNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTT---CCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcC---CCEEEEcCcHH
Confidence 35689999999888999999998776 68889999864
No 441
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=56.47 E-value=5.6 Score=34.54 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.1
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.|++|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 442
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=56.45 E-value=26 Score=38.46 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccC
Q 009641 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157 (530)
Q Consensus 78 TGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~ 157 (530)
..+.|... +.-++.. ..+.++||.|+++.-+..+.+.+... .|+++..++|+.+..+....+
T Consensus 486 ~~~~K~~~-L~~ll~~-----~~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l--------- 547 (968)
T 3dmq_A 486 NFDPRVEW-LMGYLTS-----HRSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAA--------- 547 (968)
T ss_dssp TTSHHHHH-HHHHHHH-----TSSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHH---------
T ss_pred CccHHHHH-HHHHHHh-----CCCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHH---------
Confidence 45666653 2223322 24558999999999988888877742 278999999998765553322
Q ss_pred ccCCchhHHHhhcC---CCcEEEeCChHHHHHHhcCCCCCCCCccEEEEechh
Q 009641 158 ICYDPEDVLQELQS---AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (530)
Q Consensus 158 ~~~~~~~~~~~~~~---~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 207 (530)
..+.. ..+|+|+| ..+ ..++++..++.||+-+..
T Consensus 548 ---------~~F~~g~~~~~vLvaT-~v~------~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 548 ---------AWFAEEDTGAQVLLCS-EIG------SEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp ---------HHHHSTTSSCEEEECS-CCT------TCSSCCTTCCEEECSSCC
T ss_pred ---------HHHhCCCCcccEEEec-chh------hcCCCcccCcEEEEecCC
Confidence 22222 27999999 221 256888889999987665
No 443
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=56.40 E-value=6.2 Score=33.37 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.9
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997643
No 444
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=56.34 E-value=13 Score=38.69 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=47.5
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 180 (530)
+.++||.+|++.-++++++.+++. ++++..++|+.+..+. ...+.+|+|+|.
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er------------------------~~~~~~VLVATd 447 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI------------------------PTIGDVVVVATD 447 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS------------------------CSSSCEEEEECT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH------------------------HhCCCcEEEECC
Confidence 457999999999999998888864 7889999998864321 113348999993
Q ss_pred hHHHHHHhcCCCCCCCCccEEE
Q 009641 181 GRLMDHINATRGFTLEHLCYLV 202 (530)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~lV 202 (530)
.+.+ ++++. +++||
T Consensus 448 -----Vaer--GIDId-V~~VI 461 (666)
T 3o8b_A 448 -----ALMT--GYTGD-FDSVI 461 (666)
T ss_dssp -----THHH--HCCCC-BSEEE
T ss_pred -----hHHc--cCCCC-CcEEE
Confidence 3333 35554 77777
No 445
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=56.30 E-value=6.2 Score=37.76 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.2
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
-.+|.+|||+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57799999999997643
No 446
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=56.19 E-value=6.9 Score=34.88 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.0
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+..+++.||+|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999754
No 447
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=56.02 E-value=6.8 Score=35.16 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=15.2
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+..+.+.+|+|||||...
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 566889999999999754
No 448
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=55.81 E-value=5.8 Score=34.03 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.5
Q ss_pred cEEEECCCCchHHHHH
Q 009641 71 DLCINSPTGSGKTLSY 86 (530)
Q Consensus 71 ~~li~apTGsGKT~~~ 86 (530)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999753
No 449
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=55.74 E-value=6.6 Score=33.35 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=15.9
Q ss_pred EEEECCCCchHHHHHHHHHHHHh
Q 009641 72 LCINSPTGSGKTLSYALPIVQTL 94 (530)
Q Consensus 72 ~li~apTGsGKT~~~~~~~l~~l 94 (530)
+++.|+.|||||...-. +.+.+
T Consensus 3 I~l~G~~GsGKsT~~~~-L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL-LAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 67899999999986543 33444
No 450
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=55.58 E-value=6.3 Score=35.54 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=14.9
Q ss_pred CcEEEECCCCchHHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~ 87 (530)
.-+++.|++|||||..+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 468899999999998643
No 451
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=55.46 E-value=27 Score=36.41 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=46.8
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~T 179 (530)
+.++||+||++.-++.+++.|+.. ++++..++|.. ... ..+.+ ....+|+|+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e--R~~--------------------v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS--YDT--------------------EYPKCKNGDWDFVITT 463 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS--HHH--------------------HGGGGGTCCCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH--HHH--------------------HHHHHHCCCceEEEEC
Confidence 457999999999999988888765 78899999842 111 11112 2457999999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEE
Q 009641 180 PGRLMDHINATRGFTLEHLCYLV 202 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lV 202 (530)
+.+. .++++. +++||
T Consensus 464 -----dv~e--~GIDip-v~~VI 478 (673)
T 2wv9_A 464 -----DISE--MGANFG-ASRVI 478 (673)
T ss_dssp -----GGGG--TTCCCC-CSEEE
T ss_pred -----chhh--cceeeC-CcEEE
Confidence 2333 356776 77766
No 452
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=55.36 E-value=6.5 Score=34.47 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.0
Q ss_pred cEEEECCCCchHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYA 87 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~ 87 (530)
.+++.|++|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 453
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=55.25 E-value=5.4 Score=35.50 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.5
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|||||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577789999999999963
No 454
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=55.02 E-value=31 Score=33.92 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=46.2
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCCh
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~ 181 (530)
.++||.+|++.-++++++.++.. ++++..++|..... . + ...-....+|+|+|
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~-~---~-----------------~~f~~g~~~vLVaT-- 241 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDT-E---Y-----------------PKTKLTDWDFVVTT-- 241 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHH-H---G-----------------GGGGSSCCSEEEEC--
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHH-H---H-----------------HhhccCCceEEEEC--
Confidence 37999999999999988888765 67888888865411 1 0 01112457999999
Q ss_pred HHHHHHhcCCCCCCCCccEEE
Q 009641 182 RLMDHINATRGFTLEHLCYLV 202 (530)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~lV 202 (530)
+.+. .++++.. ++||
T Consensus 242 ---~v~~--~GiDip~-~~VI 256 (451)
T 2jlq_A 242 ---DISE--MGANFRA-GRVI 256 (451)
T ss_dssp ---GGGG--SSCCCCC-SEEE
T ss_pred ---CHHH--hCcCCCC-CEEE
Confidence 2333 3567766 6666
No 455
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=54.86 E-value=43 Score=35.17 Aligned_cols=78 Identities=19% Similarity=0.130 Sum_probs=52.2
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccc--------------------------------cCceEEEeecCCchHHHHHHH
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPA--------------------------------VGLSVGLAVGQSSIADEISEL 148 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~--------------------------------~~~~v~~~~g~~~~~~~~~~~ 148 (530)
+.++||.+|++.-+...++.+.+.... ....+..++|+.+..++...
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v- 330 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI- 330 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH-
Confidence 457999999999999999988875422 01247788888876555322
Q ss_pred hhcCccccCccCCchhHHHhh-cCCCcEEEeCChHHHHHHhcCCCCCCCCccEEEE
Q 009641 149 IKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (530)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lVi 203 (530)
.+.+ ....+|+|+|. .+. .++++..+++||-
T Consensus 331 -----------------~~~f~~g~~~vlvaT~-----~l~--~Gidip~~~~VI~ 362 (715)
T 2va8_A 331 -----------------EEGFRQRKIKVIVATP-----TLA--AGVNLPARTVIIG 362 (715)
T ss_dssp -----------------HHHHHTTCSCEEEECG-----GGG--GSSCCCBSEEEEC
T ss_pred -----------------HHHHHcCCCeEEEECh-----HHh--cccCCCceEEEEe
Confidence 1222 24579999992 233 3577777877664
No 456
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=54.40 E-value=7 Score=33.83 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCchHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYA 87 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~ 87 (530)
.+..+++.|++|||||...-
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999997543
No 457
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=54.08 E-value=11 Score=28.08 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~ 370 (530)
..++++||.+-..+...+..|...| +.+..+.|++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC---CCeEEeCCCHH
Confidence 5689999999888889999998776 68888888864
No 458
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=53.69 E-value=26 Score=38.23 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=51.1
Q ss_pred CchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeec--------CCchHHHHHHHhh
Q 009641 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELIK 150 (530)
Q Consensus 79 GsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~~~~ 150 (530)
.++|.... .-++...... ..+.++||.++++..+..+.+.+.......++++..+.| +.+..++.
T Consensus 611 ~~~K~~~L-~~lL~~~~~~-~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~----- 683 (936)
T 4a2w_A 611 ENPKLEEL-VCILDDAYRY-NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQK----- 683 (936)
T ss_dssp CCHHHHHH-HHHHHHTTTS-CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------
T ss_pred CCHHHHHH-HHHHHHHhcc-CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHH-----
Confidence 46776542 2233322211 245689999999999999999998863333445444444 33333221
Q ss_pred cCccccCccCCchhHHHhhc--CCCcEEEeCChHHHHHHhcCCCCCCCCccEEEEech
Q 009641 151 RPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (530)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~--~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 206 (530)
+..+.+. ...+|+|+|- .+. .++++..+++||.=+.
T Consensus 684 -------------~il~~Fr~~g~~~VLVaT~-----~~~--eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 684 -------------GVLDAFKTSKDNRLLIATS-----VAD--EGIDIVQCNLVVLYEY 721 (936)
T ss_dssp -----------------------CCSEEEEEC-----C--------CCCCSEEEEESC
T ss_pred -------------HHHHHhhccCCeeEEEEeC-----chh--cCCcchhCCEEEEeCC
Confidence 1222222 3478999992 222 4678888999986443
No 459
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=53.63 E-value=8.4 Score=31.71 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=14.8
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|.|+|||..
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999963
No 460
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=53.20 E-value=6.7 Score=33.48 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.1
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
..+.+.+++|||||.+.
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34789999999999754
No 461
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=53.17 E-value=7.2 Score=34.04 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=20.4
Q ss_pred CCCccEEEEechhHhhhHhhhhHHHHHHhhc
Q 009641 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (530)
Q Consensus 195 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 225 (530)
+.+.+++++||--.-++......+..++..+
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 3456788888888777766555555555443
No 462
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=53.13 E-value=15 Score=26.74 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCC
Q 009641 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (530)
Q Consensus 333 ~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~ 370 (530)
.+++|||.+-..+...+..|...| +.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEG---YEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHT---CCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcC---CcEEEEcccHH
Confidence 689999999888888999999876 66778888875
No 463
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=53.09 E-value=23 Score=37.23 Aligned_cols=72 Identities=10% Similarity=0.153 Sum_probs=52.6
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCCHHHHHHHHHHHhcCCccEEEEec-----ccccCCC-CCCC
Q 009641 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRGMD-VEGV 404 (530)
Q Consensus 331 ~~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~GiD-ip~~ 404 (530)
.+.++++.+|++..+...++.++.....+..+..++|+....++ ..+..+|+|+|+ .+..+.. +.++
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 36799999999999999999986555556888999998765432 134789999996 2333333 5567
Q ss_pred CEEEE
Q 009641 405 NNVVN 409 (530)
Q Consensus 405 ~~VI~ 409 (530)
++||.
T Consensus 140 ~~vIi 144 (702)
T 2p6r_A 140 SCLVV 144 (702)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77775
No 464
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=52.90 E-value=6.7 Score=41.79 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.1
Q ss_pred CCCcEEEECCCCchHHHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSYAL 88 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~ 88 (530)
...++++.||+|+|||..+-.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 346899999999999986543
No 465
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=52.90 E-value=6.5 Score=36.50 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.0
Q ss_pred CCCCcEEEECCCCchHHHH
Q 009641 67 LFERDLCINSPTGSGKTLS 85 (530)
Q Consensus 67 ~~~~~~li~apTGsGKT~~ 85 (530)
..|.-+.+.+|+|||||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3577899999999999964
No 466
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=52.50 E-value=92 Score=30.86 Aligned_cols=30 Identities=20% Similarity=0.004 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCCCCCcEEEECCCCchHHHHH
Q 009641 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 56 ~~a~~~~~~~~~~~~~~li~apTGsGKT~~~ 86 (530)
.++++.++ ++-+|+...|.++.|+|||...
T Consensus 150 ikaID~l~-PigrGQR~~Ifg~~g~GKT~l~ 179 (513)
T 3oaa_A 150 YKAVDSMI-PIGRGQRELIIGDRQTGKTALA 179 (513)
T ss_dssp CHHHHHHS-CCBTTCBCEEEESSSSSHHHHH
T ss_pred eeeecccc-ccccCCEEEeecCCCCCcchHH
Confidence 36777654 4667999999999999999763
No 467
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=52.49 E-value=5.3 Score=38.31 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.1
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
.-.++.|+||+|||...
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44789999999999763
No 468
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=52.05 E-value=8.7 Score=33.12 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=13.9
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
.-.+|.+|+|+|||...
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 34788999999999753
No 469
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=52.02 E-value=7.6 Score=38.86 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.7
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
+.+++.+|+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999754
No 470
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=51.87 E-value=7.9 Score=41.51 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.3
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.+..+++.+|+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999754
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=51.75 E-value=6.5 Score=35.51 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.6
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|||||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577789999999999964
No 472
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=51.69 E-value=13 Score=27.89 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=29.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCCcceEEEccccCC
Q 009641 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (530)
Q Consensus 332 ~~~~iVf~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~ 370 (530)
..+++|+|.+-..+...+..|...| +.+..+.|++.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G---~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcC---CCEEEecChHH
Confidence 5689999999888888999999876 77777788763
No 473
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=51.68 E-value=15 Score=31.89 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=19.9
Q ss_pred CCCcEEEECCCCchHHHHHHHHHHHHhhh
Q 009641 68 FERDLCINSPTGSGKTLSYALPIVQTLSN 96 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~~~~~l~~l~~ 96 (530)
.|.-+++.|+.|+|||...-. +.+.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~-l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDY-LAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHH-HHHHHHH
Confidence 466788999999999986533 4445543
No 474
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=51.48 E-value=16 Score=34.73 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
+.-+.+.+|+|+|||...-. +..+... .+.++++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~--Lag~l~~--~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGK--LAHRLKN--EGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHH--HHHHHHH--TTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHH--HHhhccc--cCCEEEEec
Confidence 44578999999999976433 3333332 233566554
No 475
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=51.46 E-value=26 Score=34.19 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=29.2
Q ss_pred ccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecC
Q 009641 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (530)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~ 138 (530)
.++||++|++.-++.+++.+++. +.++..++|+
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~ 204 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK 204 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc
Confidence 37999999999999999998876 6889999986
No 476
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=51.34 E-value=15 Score=35.96 Aligned_cols=43 Identities=26% Similarity=0.184 Sum_probs=26.2
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc--CcHHHHH
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLAL 115 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~--Pt~~L~~ 115 (530)
+.+++.+++|+|||.+..-.+. .+... .+.+++++. |.+..+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~-~l~~~--~G~kVllvd~D~~r~~a~ 145 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGK-FLREK--HKKKVLVVSADVYRPAAI 145 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-HHHHT--SCCCEEEEECCCSSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHHh--cCCeEEEEecCCCCccHH
Confidence 3577789999999987654333 33331 144677765 4444443
No 477
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=50.86 E-value=8.3 Score=33.48 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.2
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
..+.+.+++|||||.+.
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 478
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=50.65 E-value=9.1 Score=32.70 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=23.5
Q ss_pred cEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEcCcHHHHHHHHH
Q 009641 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (530)
Q Consensus 71 ~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (530)
.+.+.|++|||||.+.-. +.... .+.+..+-.++.+.+.
T Consensus 14 iIgltG~~GSGKSTva~~--L~~~l--------g~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEI--LKNKY--------GAHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHH--HHHHH--------CCEEEEHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH--HHHhc--------CCEEEECcHHHHHHHH
Confidence 477899999999976433 22211 2334556666665544
No 479
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=50.55 E-value=7.6 Score=34.76 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.5
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|||||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999963
No 480
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=50.39 E-value=7.4 Score=35.49 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=15.3
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|||||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999963
No 481
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=50.28 E-value=7.7 Score=34.23 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.4
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|.|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477788999999999963
No 482
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=50.18 E-value=8.2 Score=33.12 Aligned_cols=18 Identities=33% Similarity=0.206 Sum_probs=14.5
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+.-+.+.+++|||||..+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999754
No 483
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=50.04 E-value=9.7 Score=33.55 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.9
Q ss_pred CCCcEEEECCCCchHHHHH
Q 009641 68 FERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~~ 86 (530)
.|.-+++.||.|||||...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4667889999999999754
No 484
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=49.50 E-value=16 Score=34.25 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=14.7
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+.-+.+.+|+|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455789999999999754
No 485
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=49.25 E-value=7.5 Score=35.16 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.3
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|+|||..
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999963
No 486
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=49.10 E-value=6.4 Score=35.15 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.3
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999963
No 487
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=49.05 E-value=17 Score=33.41 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=21.5
Q ss_pred CCcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
++-+.+.+++|+|||......+. .+.. .+.+++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~-~~~~---~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL-YYKG---KGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH---cCCeEEEec
Confidence 45577789999999976543322 2222 233566654
No 488
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=49.05 E-value=15 Score=33.79 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=21.5
Q ss_pred CcEEEECCCCchHHHHHHHHHHHHhhhcCCCcccEEEEc
Q 009641 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~~~~~l~~l~~~~~~~~~~lil~ 108 (530)
.-+++.+++|+|||......+. .+.. .+.+++++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~-~~~~---~g~~v~l~~ 133 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAY-FYKK---KGFKVGLVG 133 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH---CCCeEEEEe
Confidence 4577889999999976544332 2222 233566664
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=49.00 E-value=8.1 Score=32.36 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=15.7
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
|+-+++.++.|+|||..+
T Consensus 16 G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELS 33 (181)
T ss_dssp TEEEEEEESSSSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 677999999999999754
No 490
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=48.95 E-value=7.7 Score=34.95 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.4
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|||||..
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567788999999999963
No 491
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=48.78 E-value=9.7 Score=34.51 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.5
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|+|||..
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999964
No 492
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=48.68 E-value=9.5 Score=35.08 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=13.7
Q ss_pred CcEEEECCCCchHHHHH
Q 009641 70 RDLCINSPTGSGKTLSY 86 (530)
Q Consensus 70 ~~~li~apTGsGKT~~~ 86 (530)
.-+.|.||+|||||..+
T Consensus 32 ~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34678999999999754
No 493
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=48.61 E-value=8.5 Score=34.24 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.3
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|.|+|||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999963
No 494
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=48.53 E-value=7.9 Score=35.23 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.4
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|.|||||..
T Consensus 44 ~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999963
No 495
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=48.41 E-value=8.5 Score=34.65 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.2
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|||||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999963
No 496
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=48.21 E-value=3.8 Score=40.89 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=0.0
Q ss_pred cccEEEEcCcHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeC
Q 009641 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (530)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~T 179 (530)
..++||.||++.-+..+++.+... +..+..++|+.+..++... .+.+ ....+|+|+|
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~------------------~~~f~~g~~~iLv~T 390 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAV------------------IERFREGKEKVLVTT 390 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHH------------------HHHHHcCCCcEEEEc
Confidence 347999999999988888887765 6778888888765444221 1112 2346899999
Q ss_pred ChHHHHHHhcCCCCCCCCccEEE
Q 009641 180 PGRLMDHINATRGFTLEHLCYLV 202 (530)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~lV 202 (530)
. .+. .++++.++++||
T Consensus 391 ~-----~~~--~GlDip~v~~VI 406 (479)
T 3fmp_B 391 N-----VCA--RGIDVEQVSVVI 406 (479)
T ss_dssp -----------------------
T ss_pred c-----ccc--cCCccccCCEEE
Confidence 2 333 457777888876
No 497
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=48.12 E-value=7.8 Score=34.05 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.1
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|.|||||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999963
No 498
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=48.00 E-value=8.5 Score=34.87 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.3
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|||||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467788999999999963
No 499
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=47.83 E-value=8.2 Score=34.99 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.4
Q ss_pred CCCcEEEECCCCchHHHH
Q 009641 68 FERDLCINSPTGSGKTLS 85 (530)
Q Consensus 68 ~~~~~li~apTGsGKT~~ 85 (530)
.|.-+.+.+|+|||||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999963
No 500
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=47.78 E-value=9.9 Score=33.82 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.5
Q ss_pred CCcEEEECCCCchHHHHH
Q 009641 69 ERDLCINSPTGSGKTLSY 86 (530)
Q Consensus 69 ~~~~li~apTGsGKT~~~ 86 (530)
+.-+-+.||.|||||..+
T Consensus 25 g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp SEEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 445778999999999754
Done!