Query 009642
Match_columns 530
No_of_seqs 190 out of 1355
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 15:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 3E-140 5E-145 1105.6 43.7 478 42-523 31-512 (524)
2 PLN02849 beta-glucosidase 100.0 5E-133 1E-137 1079.2 48.0 481 9-521 3-484 (503)
3 PLN02998 beta-glucosidase 100.0 1E-131 2E-136 1067.8 46.1 460 43-520 26-488 (497)
4 PLN02814 beta-glucosidase 100.0 2E-131 3E-136 1068.0 46.7 465 43-526 23-489 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 4E-130 8E-135 1022.8 39.3 449 46-521 2-454 (460)
6 PRK13511 6-phospho-beta-galact 100.0 1E-128 3E-133 1042.4 44.2 450 46-522 3-468 (469)
7 TIGR01233 lacG 6-phospho-beta- 100.0 5E-128 1E-132 1036.3 45.7 448 46-523 2-467 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 2E-127 4E-132 1033.4 45.9 450 45-524 3-477 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 3E-127 8E-132 1030.7 45.7 447 47-522 3-474 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 7E-129 2E-133 1044.5 31.0 449 46-522 3-455 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 3E-126 7E-131 1022.6 46.2 449 44-522 2-475 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 8E-126 2E-130 1017.7 45.9 447 47-523 3-472 (474)
13 TIGR03356 BGL beta-galactosida 100.0 3E-122 7E-127 983.0 42.7 427 48-513 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 4.4E-13 9.5E-18 134.4 24.1 251 123-512 1-253 (254)
15 PF00150 Cellulase: Cellulase 99.4 5.7E-11 1.2E-15 119.3 21.0 109 103-216 22-134 (281)
16 PF02449 Glyco_hydro_42: Beta- 99.3 2E-12 4.3E-17 136.8 8.9 109 102-216 10-141 (374)
17 PF07745 Glyco_hydro_53: Glyco 99.2 7.4E-09 1.6E-13 107.2 24.4 249 105-480 27-299 (332)
18 PRK10150 beta-D-glucuronidase; 99.0 6.2E-08 1.3E-12 108.9 24.6 264 102-520 313-595 (604)
19 PF00331 Glyco_hydro_10: Glyco 99.0 4.9E-08 1.1E-12 101.3 21.3 274 116-515 35-318 (320)
20 PF01229 Glyco_hydro_39: Glyco 98.9 4.1E-08 8.9E-13 107.5 19.4 292 103-516 40-359 (486)
21 COG3693 XynA Beta-1,4-xylanase 98.8 2.8E-07 6E-12 93.2 17.3 85 123-215 67-153 (345)
22 COG1874 LacA Beta-galactosidas 98.8 1.4E-08 3E-13 113.1 8.5 119 103-227 31-176 (673)
23 PF02836 Glyco_hydro_2_C: Glyc 98.1 0.00015 3.3E-09 74.3 17.7 93 100-213 34-132 (298)
24 COG3867 Arabinogalactan endo-1 97.9 0.0035 7.5E-08 63.2 22.2 319 46-516 33-394 (403)
25 PF01301 Glyco_hydro_35: Glyco 97.7 0.00012 2.7E-09 76.0 9.6 109 103-214 25-151 (319)
26 COG2730 BglC Endoglucanase [Ca 97.6 0.00029 6.2E-09 75.7 9.8 111 105-215 76-193 (407)
27 PLN03059 beta-galactosidase; P 97.0 0.004 8.6E-08 71.4 11.3 112 102-216 59-190 (840)
28 PF14587 Glyco_hydr_30_2: O-Gl 96.9 0.0023 4.9E-08 67.3 7.1 102 112-215 57-185 (384)
29 PF01373 Glyco_hydro_14: Glyco 96.7 0.0025 5.5E-08 67.3 5.5 106 101-214 15-151 (402)
30 PLN02161 beta-amylase 96.6 0.0063 1.4E-07 65.6 8.4 110 98-214 113-261 (531)
31 PLN02803 beta-amylase 96.6 0.0066 1.4E-07 65.8 8.3 108 101-215 106-252 (548)
32 PLN00197 beta-amylase; Provisi 96.5 0.011 2.4E-07 64.3 9.2 107 101-214 126-271 (573)
33 PF13204 DUF4038: Protein of u 96.2 0.032 7E-07 57.2 10.7 105 104-213 32-156 (289)
34 PF11790 Glyco_hydro_cc: Glyco 96.2 0.025 5.4E-07 56.4 9.4 67 406-482 151-217 (239)
35 PLN02905 beta-amylase 96.2 0.024 5.2E-07 62.5 9.5 102 98-204 282-422 (702)
36 PLN02801 beta-amylase 96.1 0.033 7.2E-07 60.2 10.3 100 100-204 35-173 (517)
37 PLN02705 beta-amylase 96.0 0.03 6.5E-07 61.6 9.3 100 100-204 266-404 (681)
38 PF14488 DUF4434: Domain of un 95.6 0.098 2.1E-06 49.3 10.0 105 102-214 20-131 (166)
39 KOG0496 Beta-galactosidase [Ca 95.3 0.074 1.6E-06 59.2 9.3 109 103-214 50-176 (649)
40 PRK09525 lacZ beta-D-galactosi 94.5 0.15 3.2E-06 61.1 9.6 91 100-214 369-464 (1027)
41 PRK10340 ebgA cryptic beta-D-g 93.6 0.29 6.3E-06 58.7 9.8 91 100-214 353-451 (1021)
42 COG3250 LacZ Beta-galactosidas 93.2 0.36 7.8E-06 56.2 9.3 90 98-214 317-408 (808)
43 PF02055 Glyco_hydro_30: O-Gly 89.9 19 0.00041 40.0 17.8 99 411-518 319-421 (496)
44 PF12891 Glyco_hydro_44: Glyco 89.6 0.92 2E-05 45.1 6.7 114 144-281 24-179 (239)
45 COG3934 Endo-beta-mannanase [C 88.7 0.23 4.9E-06 53.5 1.8 109 104-215 28-150 (587)
46 PF14871 GHL6: Hypothetical gl 86.0 3.4 7.3E-05 37.4 7.6 94 106-200 4-123 (132)
47 PF03198 Glyco_hydro_72: Gluca 85.7 4.7 0.0001 41.7 9.2 90 103-213 54-145 (314)
48 PF07488 Glyco_hydro_67M: Glyc 85.2 8.9 0.00019 39.5 10.8 87 101-202 56-150 (328)
49 COG3664 XynB Beta-xylosidase [ 80.3 2.5 5.4E-05 45.0 4.9 99 111-216 14-117 (428)
50 smart00642 Aamy Alpha-amylase 77.8 6.2 0.00014 37.0 6.4 66 99-164 16-90 (166)
51 PF02638 DUF187: Glycosyl hydr 75.6 12 0.00025 38.9 8.2 98 100-201 17-154 (311)
52 PF00332 Glyco_hydro_17: Glyco 75.0 4.1 8.8E-05 42.3 4.7 83 407-498 211-302 (310)
53 KOG2233 Alpha-N-acetylglucosam 65.7 16 0.00036 39.8 6.7 113 101-213 77-248 (666)
54 PLN02361 alpha-amylase 62.5 16 0.00034 39.5 6.0 68 99-166 26-100 (401)
55 cd06543 GH18_PF-ChiA-like PF-C 62.5 33 0.00072 35.3 8.2 84 109-201 19-104 (294)
56 TIGR00433 bioB biotin syntheta 60.4 21 0.00045 36.2 6.3 53 105-163 123-177 (296)
57 PRK12313 glycogen branching en 60.2 34 0.00073 39.1 8.6 98 101-208 169-307 (633)
58 cd07939 DRE_TIM_NifV Streptomy 59.9 28 0.0006 34.9 7.0 59 105-164 72-130 (259)
59 TIGR03581 EF_0839 conserved hy 59.3 32 0.0007 33.8 6.9 78 97-189 130-230 (236)
60 PF00128 Alpha-amylase: Alpha 57.7 9.3 0.0002 38.2 3.2 58 104-164 6-72 (316)
61 PF10566 Glyco_hydro_97: Glyco 57.4 71 0.0015 32.6 9.4 101 96-199 26-149 (273)
62 TIGR02402 trehalose_TreZ malto 57.0 40 0.00086 37.8 8.3 60 100-167 109-185 (542)
63 cd03174 DRE_TIM_metallolyase D 56.8 32 0.0007 34.0 6.9 80 105-197 77-156 (265)
64 PLN02447 1,4-alpha-glucan-bran 56.5 57 0.0012 38.1 9.5 94 100-201 248-383 (758)
65 PRK05402 glycogen branching en 55.7 50 0.0011 38.4 9.1 99 101-209 264-403 (726)
66 PF03659 Glyco_hydro_71: Glyco 55.5 54 0.0012 35.2 8.6 51 102-164 17-67 (386)
67 cd07948 DRE_TIM_HCS Saccharomy 54.6 48 0.001 33.5 7.7 61 105-166 74-134 (262)
68 PF12876 Cellulase-like: Sugar 54.4 7.4 0.00016 32.3 1.5 19 196-214 1-22 (88)
69 PRK12581 oxaloacetate decarbox 54.2 43 0.00093 36.8 7.7 97 53-171 54-159 (468)
70 cd06593 GH31_xylosidase_YicI Y 54.1 85 0.0018 32.2 9.7 106 103-213 25-160 (308)
71 cd07945 DRE_TIM_CMS Leptospira 53.4 93 0.002 31.8 9.7 65 105-170 77-141 (280)
72 TIGR02090 LEU1_arch isopropylm 53.0 40 0.00086 35.8 7.1 62 104-166 73-134 (363)
73 PF13200 DUF4015: Putative gly 52.8 46 0.00099 34.7 7.3 98 101-199 12-136 (316)
74 COG5309 Exo-beta-1,3-glucanase 52.5 36 0.00079 34.5 6.2 52 95-164 56-107 (305)
75 PRK05799 coproporphyrinogen II 52.2 62 0.0014 34.2 8.5 94 105-216 99-195 (374)
76 cd02874 GH18_CFLE_spore_hydrol 52.0 41 0.0009 34.5 7.0 84 108-201 16-103 (313)
77 PRK05692 hydroxymethylglutaryl 50.2 55 0.0012 33.5 7.5 86 104-199 81-167 (287)
78 PRK12568 glycogen branching en 49.8 68 0.0015 37.3 8.7 93 101-201 268-401 (730)
79 PLN00196 alpha-amylase; Provis 49.7 36 0.00078 37.0 6.3 68 100-167 42-117 (428)
80 PRK04161 tagatose 1,6-diphosph 47.8 87 0.0019 32.8 8.3 93 106-209 111-206 (329)
81 PLN02746 hydroxymethylglutaryl 47.5 62 0.0013 34.2 7.4 85 104-198 123-208 (347)
82 PRK14040 oxaloacetate decarbox 47.4 62 0.0014 36.7 7.9 93 105-216 100-212 (593)
83 TIGR02660 nifV_homocitr homoci 47.3 53 0.0012 34.8 7.0 79 105-198 75-153 (365)
84 TIGR01515 branching_enzym alph 47.2 1.1E+02 0.0025 34.7 10.1 93 101-201 155-288 (613)
85 PRK14706 glycogen branching en 47.2 80 0.0017 36.2 8.8 58 144-201 217-299 (639)
86 TIGR01210 conserved hypothetic 47.2 82 0.0018 32.7 8.2 108 105-228 117-229 (313)
87 TIGR02403 trehalose_treC alpha 47.0 31 0.00067 38.7 5.4 58 99-164 24-95 (543)
88 PRK12399 tagatose 1,6-diphosph 46.9 91 0.002 32.5 8.3 92 107-209 110-204 (324)
89 PRK14041 oxaloacetate decarbox 46.6 67 0.0015 35.4 7.8 56 100-170 88-148 (467)
90 cd07941 DRE_TIM_LeuA3 Desulfob 46.0 1.7E+02 0.0036 29.7 10.1 61 106-167 82-142 (273)
91 PRK09441 cytoplasmic alpha-amy 45.5 44 0.00094 36.8 6.2 70 99-168 19-107 (479)
92 PRK12858 tagatose 1,6-diphosph 45.4 85 0.0018 33.1 8.0 56 108-168 112-167 (340)
93 PRK11858 aksA trans-homoaconit 45.3 67 0.0015 34.2 7.4 59 105-164 78-136 (378)
94 PRK10933 trehalose-6-phosphate 45.3 35 0.00076 38.3 5.5 60 99-166 30-105 (551)
95 cd07943 DRE_TIM_HOA 4-hydroxy- 45.2 1.4E+02 0.003 29.9 9.4 47 105-166 88-134 (263)
96 cd07944 DRE_TIM_HOA_like 4-hyd 44.8 84 0.0018 31.8 7.7 65 105-198 85-149 (266)
97 TIGR00612 ispG_gcpE 1-hydroxy- 43.6 1.5E+02 0.0032 31.2 9.2 88 93-196 73-160 (346)
98 TIGR02635 RhaI_grampos L-rhamn 43.1 1.5E+02 0.0032 31.8 9.4 87 96-202 35-130 (378)
99 cd07938 DRE_TIM_HMGL 3-hydroxy 42.6 90 0.0019 31.7 7.6 84 105-198 76-160 (274)
100 PF02065 Melibiase: Melibiase; 42.2 2.1E+02 0.0046 30.8 10.6 93 102-201 58-183 (394)
101 cd06598 GH31_transferase_CtsZ 42.1 1.7E+02 0.0036 30.4 9.6 110 104-216 26-168 (317)
102 cd06592 GH31_glucosidase_KIAA1 41.9 1.5E+02 0.0032 30.5 9.1 107 103-214 31-167 (303)
103 PRK14511 maltooligosyl trehalo 41.2 81 0.0018 37.4 7.7 59 101-167 19-94 (879)
104 PRK12331 oxaloacetate decarbox 40.5 1.1E+02 0.0024 33.5 8.2 52 104-170 98-149 (448)
105 PLN02389 biotin synthase 40.4 82 0.0018 33.7 7.1 57 103-164 176-233 (379)
106 TIGR00539 hemN_rel putative ox 40.1 1.3E+02 0.0028 31.7 8.5 92 105-214 100-194 (360)
107 PF05089 NAGLU: Alpha-N-acetyl 40.0 72 0.0016 33.5 6.4 76 101-176 18-127 (333)
108 PLN02784 alpha-amylase 39.5 82 0.0018 37.2 7.3 68 99-166 518-592 (894)
109 PRK08599 coproporphyrinogen II 39.5 1.2E+02 0.0026 32.1 8.2 96 104-216 99-196 (377)
110 TIGR03234 OH-pyruv-isom hydrox 39.0 96 0.0021 30.5 7.1 69 99-170 81-150 (254)
111 PRK14705 glycogen branching en 38.9 1.7E+02 0.0036 36.3 10.1 89 105-201 768-897 (1224)
112 TIGR03217 4OH_2_O_val_ald 4-hy 38.3 1.3E+02 0.0029 31.5 8.2 54 105-173 90-145 (333)
113 PRK09058 coproporphyrinogen II 38.0 1.1E+02 0.0024 33.4 7.9 105 105-227 163-270 (449)
114 TIGR02456 treS_nterm trehalose 37.8 48 0.001 37.1 5.1 58 101-166 27-100 (539)
115 cd07937 DRE_TIM_PC_TC_5S Pyruv 37.5 2E+02 0.0042 29.2 9.1 69 104-199 93-161 (275)
116 PRK09505 malS alpha-amylase; R 37.1 71 0.0015 37.0 6.4 65 104-168 232-318 (683)
117 PF03511 Fanconi_A: Fanconi an 37.1 24 0.00051 27.6 1.7 39 126-168 19-57 (64)
118 PF05968 Bacillus_PapR: Bacill 36.7 29 0.00063 25.3 2.0 13 7-19 3-15 (48)
119 cd06591 GH31_xylosidase_XylS X 36.7 2.2E+02 0.0047 29.5 9.5 70 146-216 68-163 (319)
120 cd06602 GH31_MGAM_SI_GAA This 36.2 2.1E+02 0.0046 29.9 9.4 68 147-215 69-168 (339)
121 PRK08195 4-hyroxy-2-oxovalerat 35.9 81 0.0018 33.1 6.2 67 105-201 91-157 (337)
122 cd06545 GH18_3CO4_chitinase Th 35.3 1.2E+02 0.0025 30.2 7.0 74 121-201 26-99 (253)
123 cd06542 GH18_EndoS-like Endo-b 35.3 1.1E+02 0.0025 30.1 6.9 55 143-201 50-104 (255)
124 PRK07094 biotin synthase; Prov 34.9 65 0.0014 33.2 5.3 56 103-163 127-184 (323)
125 PF04914 DltD_C: DltD C-termin 32.9 56 0.0012 29.5 3.8 67 144-214 36-103 (130)
126 TIGR01108 oadA oxaloacetate de 32.5 1.7E+02 0.0036 33.3 8.3 94 104-216 93-206 (582)
127 COG0821 gcpE 1-hydroxy-2-methy 32.4 3.5E+02 0.0075 28.6 9.7 88 94-197 76-163 (361)
128 cd06603 GH31_GANC_GANAB_alpha 32.2 2.1E+02 0.0046 29.9 8.6 71 147-217 67-167 (339)
129 cd06599 GH31_glycosidase_Aec37 31.7 3.8E+02 0.0083 27.6 10.4 69 146-215 75-171 (317)
130 TIGR01232 lacD tagatose 1,6-di 31.5 1.8E+02 0.0039 30.4 7.6 92 106-208 110-204 (325)
131 PRK06294 coproporphyrinogen II 30.6 2.2E+02 0.0047 30.2 8.5 93 105-216 103-199 (370)
132 PRK12677 xylose isomerase; Pro 30.5 4.5E+02 0.0098 28.1 10.8 71 104-183 33-104 (384)
133 PTZ00445 p36-lilke protein; Pr 30.4 95 0.0021 30.6 5.1 58 106-166 33-100 (219)
134 PRK03705 glycogen debranching 30.4 1.2E+02 0.0026 35.0 6.8 56 108-166 185-266 (658)
135 TIGR02401 trehalose_TreY malto 29.8 1.3E+02 0.0029 35.4 7.1 60 101-168 15-91 (825)
136 COG3534 AbfA Alpha-L-arabinofu 29.7 69 0.0015 34.9 4.4 85 106-213 53-174 (501)
137 cd06600 GH31_MGAM-like This fa 29.7 3.5E+02 0.0075 28.0 9.6 70 146-216 66-164 (317)
138 TIGR03471 HpnJ hopanoid biosyn 29.5 1.8E+02 0.0038 31.9 7.7 76 105-195 287-364 (472)
139 PRK13398 3-deoxy-7-phosphohept 29.2 2.1E+02 0.0046 29.0 7.7 73 97-174 36-108 (266)
140 PRK10785 maltodextrin glucosid 29.2 1E+02 0.0022 35.0 6.0 56 103-166 180-250 (598)
141 cd06601 GH31_lyase_GLase GLase 29.1 2.3E+02 0.005 29.7 8.2 70 147-219 67-140 (332)
142 PRK06256 biotin synthase; Vali 28.8 88 0.0019 32.5 5.0 56 103-163 150-206 (336)
143 PF00682 HMGL-like: HMGL-like 28.7 3.7E+02 0.008 26.1 9.2 106 105-214 66-193 (237)
144 cd00311 TIM Triosephosphate is 28.5 1.5E+02 0.0033 29.6 6.4 48 108-164 77-124 (242)
145 COG1523 PulA Type II secretory 28.2 1.2E+02 0.0026 35.2 6.2 59 108-166 206-289 (697)
146 PRK14510 putative bifunctional 28.0 73 0.0016 39.4 4.8 61 100-166 183-271 (1221)
147 cd02803 OYE_like_FMN_family Ol 27.6 4.2E+02 0.0092 27.1 9.9 40 126-167 61-100 (327)
148 PRK10426 alpha-glucosidase; Pr 27.3 4.7E+02 0.01 30.1 10.8 107 103-213 222-364 (635)
149 PLN02960 alpha-amylase 27.2 1.3E+02 0.0027 35.9 6.2 95 99-201 413-549 (897)
150 COG1501 Alpha-glucosidases, fa 27.2 2.2E+02 0.0048 33.5 8.3 100 115-219 295-422 (772)
151 cd06525 GH25_Lyc-like Lyc mura 27.0 4.4E+02 0.0095 24.7 9.1 51 106-170 12-62 (184)
152 cd07947 DRE_TIM_Re_CS Clostrid 26.9 2.2E+02 0.0049 29.0 7.5 60 104-164 76-135 (279)
153 cd02742 GH20_hexosaminidase Be 26.9 1.9E+02 0.0042 29.6 7.1 66 102-173 16-98 (303)
154 cd07940 DRE_TIM_IPMS 2-isoprop 26.4 2E+02 0.0043 28.9 7.0 79 105-198 72-154 (268)
155 cd06565 GH20_GcnA-like Glycosy 26.4 2.6E+02 0.0057 28.7 8.0 65 103-174 18-87 (301)
156 TIGR02100 glgX_debranch glycog 26.2 91 0.002 36.1 4.9 24 143-166 244-269 (688)
157 PRK14507 putative bifunctional 26.1 1.7E+02 0.0036 37.5 7.4 66 101-174 757-844 (1693)
158 PF04055 Radical_SAM: Radical 25.8 1.6E+02 0.0035 25.8 5.6 52 105-160 90-143 (166)
159 TIGR02631 xylA_Arthro xylose i 25.7 4.8E+02 0.01 27.9 10.0 72 103-183 33-105 (382)
160 PRK05628 coproporphyrinogen II 25.3 2.9E+02 0.0062 29.2 8.2 95 105-217 108-205 (375)
161 PRK09856 fructoselysine 3-epim 24.8 1.2E+02 0.0027 30.1 5.1 61 99-162 87-147 (275)
162 COG3589 Uncharacterized conser 24.5 1.6E+02 0.0036 30.9 5.9 72 105-192 19-90 (360)
163 PRK09997 hydroxypyruvate isome 23.8 2.5E+02 0.0055 27.6 7.2 67 102-171 85-152 (258)
164 cd07938 DRE_TIM_HMGL 3-hydroxy 23.8 7.5E+02 0.016 25.0 10.7 91 101-212 113-203 (274)
165 TIGR00419 tim triosephosphate 23.7 2E+02 0.0044 28.0 6.1 44 108-164 74-117 (205)
166 cd06568 GH20_SpHex_like A subg 23.7 3.1E+02 0.0067 28.7 7.9 74 95-174 9-102 (329)
167 PRK11572 copper homeostasis pr 23.7 1.9E+02 0.0042 29.1 6.1 43 100-153 71-113 (248)
168 PRK08446 coproporphyrinogen II 23.6 3.7E+02 0.0081 28.1 8.6 92 105-214 98-192 (350)
169 PRK09936 hypothetical protein; 23.4 5.9E+02 0.013 26.3 9.5 99 103-214 39-145 (296)
170 TIGR02351 thiH thiazole biosyn 23.3 4.9E+02 0.011 27.5 9.5 98 102-214 159-260 (366)
171 PF01261 AP_endonuc_2: Xylose 23.2 88 0.0019 29.1 3.5 63 99-162 68-130 (213)
172 PRK14567 triosephosphate isome 23.0 2E+02 0.0043 29.0 6.1 49 108-165 78-126 (253)
173 TIGR00423 radical SAM domain p 22.9 1.3E+02 0.0027 31.0 4.9 53 104-164 106-165 (309)
174 cd06419 GH25_muramidase_2 Unch 22.9 2.6E+02 0.0056 26.8 6.6 24 183-206 109-132 (190)
175 PRK08508 biotin synthase; Prov 22.8 1.7E+02 0.0036 29.8 5.6 56 104-164 101-157 (279)
176 TIGR00542 hxl6Piso_put hexulos 22.6 1.7E+02 0.0037 29.2 5.7 62 99-163 91-152 (279)
177 PRK10340 ebgA cryptic beta-D-g 22.5 3E+02 0.0065 33.5 8.5 80 421-522 505-604 (1021)
178 cd00927 Cyt_c_Oxidase_VIc Cyto 22.3 45 0.00099 26.8 1.1 20 97-116 45-66 (70)
179 PF04551 GcpE: GcpE protein; 22.3 5.5E+02 0.012 27.3 9.3 57 105-175 34-91 (359)
180 COG0366 AmyA Glycosidases [Car 22.2 1.1E+02 0.0024 33.1 4.5 54 106-167 33-102 (505)
181 PRK09240 thiH thiamine biosynt 22.1 6.6E+02 0.014 26.6 10.2 94 103-214 161-261 (371)
182 PF09585 Lin0512_fam: Conserve 22.1 70 0.0015 28.2 2.3 32 424-466 2-33 (113)
183 PRK05660 HemN family oxidoredu 22.0 3.7E+02 0.008 28.5 8.3 94 105-215 107-202 (378)
184 smart00729 Elp3 Elongator prot 21.7 4.8E+02 0.01 23.7 8.3 58 102-164 97-157 (216)
185 PRK13209 L-xylulose 5-phosphat 21.7 7.4E+02 0.016 24.5 10.2 52 104-161 23-74 (283)
186 PRK15492 triosephosphate isome 21.7 2.2E+02 0.0047 28.9 6.1 48 108-164 87-134 (260)
187 PRK09432 metF 5,10-methylenete 21.6 2E+02 0.0044 29.5 6.0 97 104-216 162-283 (296)
188 PF11997 DUF3492: Domain of un 21.6 88 0.0019 31.7 3.3 27 407-436 185-211 (268)
189 PRK09249 coproporphyrinogen II 21.6 2.7E+02 0.0058 30.3 7.3 63 104-171 150-214 (453)
190 PRK01060 endonuclease IV; Prov 21.3 4.4E+02 0.0095 26.2 8.4 50 104-160 14-63 (281)
191 PRK09282 pyruvate carboxylase 20.9 3.4E+02 0.0075 30.9 8.1 93 104-215 98-210 (592)
192 PRK00042 tpiA triosephosphate 20.9 2.3E+02 0.005 28.5 6.1 48 108-164 79-126 (250)
193 PRK08208 coproporphyrinogen II 20.8 3.2E+02 0.0069 29.6 7.6 60 105-171 141-204 (430)
194 PRK05904 coproporphyrinogen II 20.6 3.9E+02 0.0086 28.1 8.1 94 105-215 103-198 (353)
195 PTZ00333 triosephosphate isome 20.5 2.6E+02 0.0057 28.2 6.4 48 109-165 83-130 (255)
196 PRK00366 ispG 4-hydroxy-3-meth 20.3 2.9E+02 0.0062 29.4 6.7 54 144-197 117-170 (360)
197 TIGR01211 ELP3 histone acetylt 20.3 3.5E+02 0.0075 30.3 7.9 107 105-229 206-317 (522)
198 PLN02925 4-hydroxy-3-methylbut 20.1 3E+02 0.0065 31.9 7.3 54 145-199 211-264 (733)
199 PLN02561 triosephosphate isome 20.1 2.7E+02 0.0058 28.1 6.3 48 108-164 81-128 (253)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-140 Score=1105.57 Aligned_cols=478 Identities=58% Similarity=1.078 Sum_probs=443.2
Q ss_pred CCCcCCCCCCCeeeeeeccccccCCCCCCCCCCcccccccccCCCcccCCCCCccccchhhchHHHHHHHHHcCCCeEEe
Q 009642 42 PINRSNFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKIHDGSNANVAIDFYHRYKEDIKLMKETGLDSFRF 121 (530)
Q Consensus 42 ~~~~~~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~r~~eDi~l~k~lG~~~~R~ 121 (530)
.+++..||+||+||+||||||+|||+++|||++|+||.|+|..|+++.++.++|+|||+||||+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 46678999999999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHhc
Q 009642 122 SISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFG 201 (530)
Q Consensus 122 si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 201 (530)
||+||||+|.|...+.+|++||+||+++|++|+++||+|+|||+|||+|++|+++||||+|+++++.|.+||+.||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999755779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCccEEEE
Q 009642 202 DRVKQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKYQGHQKGEIGIT 281 (530)
Q Consensus 202 d~V~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~ 281 (530)
|+||+|+|||||++++..||..|..|||+|+... .+|..|+|.+++|.|+||||+|||+||++||+.++..|+|+|||+
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~-~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~ 269 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYV-GNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIA 269 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCccc-ccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEE
Confidence 9999999999999999999999999999998766 889999999999999999999999999999999988899999999
Q ss_pred eeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCCCCCCChhHHhhhcCCccEEEEecCCCceec
Q 009642 282 IVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSRLPNFSKTESEMLKGSYDFLGINYYAPMYAE 361 (530)
Q Consensus 282 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYt~~~v~ 361 (530)
+...|++|.+++++|++||+|+.+|..+||++|++.|+||..|++.+++|||.||++|.+.+||+.||+|||||++.+|+
T Consensus 270 ~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~ 349 (524)
T KOG0626|consen 270 LSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVK 349 (524)
T ss_pred EeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhh
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCccCCCCCcceecccCCC-CCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEEEEcCCCCCCcc--cc
Q 009642 362 DSSSSTSNSDTISYSTDSRVTLSTHKDG-NPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIYITENGVADAKD--VE 438 (530)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~~~--~~ 438 (530)
+...+... ..+.+..|.++.. ..++ .+++..+.+.|..++|+||+++|++++++|++|||||||||+++.+. .+
T Consensus 350 ~~~~~~~~-~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~ 426 (524)
T KOG0626|consen 350 HLKPPPDP-SQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKS 426 (524)
T ss_pred ccCCCCCC-CCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccc
Confidence 86532110 1234444554443 2233 45666667889999999999999999999999999999999999754 24
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHH-cCCceEEEEEecccccccccCCCccceeEEEEeCCCCccccccchHHHHHHhh
Q 009642 439 QAQARKDDLRIKCYQEHLWYLLEAIK-EGVHVKGYYAWSFLDNFEWDAGFTVGFGMVYVDHKDNLQRYPKDSFFWYKSFL 517 (530)
Q Consensus 439 ~~g~i~D~~Ri~yl~~hL~~v~~Ai~-dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii 517 (530)
....++|+.||+|++.||++|++||. +||||+|||+|||||||||..||+.|||||+|||+|.++|+||.|++||++++
T Consensus 427 ~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl 506 (524)
T KOG0626|consen 427 LEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFL 506 (524)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHH
Confidence 45677999999999999999999996 99999999999999999999999999999999999889999999999999999
Q ss_pred cCCCCC
Q 009642 518 APPKSP 523 (530)
Q Consensus 518 ~~~~~~ 523 (530)
+.+..|
T Consensus 507 ~~~~~~ 512 (524)
T KOG0626|consen 507 KGKVKP 512 (524)
T ss_pred cCCCCC
Confidence 998865
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=5.4e-133 Score=1079.19 Aligned_cols=481 Identities=46% Similarity=0.859 Sum_probs=420.9
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhHhhhhhcCCCCcCCCCCCCeeeeeeccccccCCCCCCCCCCcccccccccCCCcc
Q 009642 9 LICSIGALAGLLVLATSRSCRADAAAEAEEIQMPINRSNFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKI 88 (530)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~ 88 (530)
||.||.+.-.||++.+.. |+ .++.+.+||+||+||+|||||||||++++||||+|+||.|++ .|
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~-~~--- 66 (503)
T PLN02849 3 LILSLFTIFLLLALSSGK-CS-----------SDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLH-SR--- 66 (503)
T ss_pred hHHHHHHHHHHHhccccc-cc-----------CCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeec-cC---
Confidence 567777777666654433 32 224456799999999999999999999999999999999987 33
Q ss_pred cCCCCCccccchhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 009642 89 HDGSNANVAIDFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWD 168 (530)
Q Consensus 89 ~~~~~~~~a~d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~ 168 (530)
++.++++||||||||+|||+|||+||+|+|||||+||||+|++. |.+|++||+||+++|++|+++||+|||||+|||
T Consensus 67 -~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~--g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~d 143 (503)
T PLN02849 67 -NMSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGR--GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYD 143 (503)
T ss_pred -CCCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCC--CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCC
Confidence 34578999999999999999999999999999999999999985 889999999999999999999999999999999
Q ss_pred CchhHHhhhCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChH
Q 009642 169 LPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEP 248 (530)
Q Consensus 169 ~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~ 248 (530)
+|+||++++|||.|++++++|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+.... ..|..+++.++.
T Consensus 144 lP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~-~~~~~~~~~~~~ 222 (503)
T PLN02849 144 HPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPG-RNCSSGNSSTEP 222 (503)
T ss_pred CcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCcccccc-ccccccchhHHH
Confidence 9999999889999999999999999999999999999999999999999999999999999743100 124444555678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCccEEEEeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhh
Q 009642 249 YIVSHNLLLSHATAVKLYKEKYQGHQKGEIGITIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLV 328 (530)
Q Consensus 249 ~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l 328 (530)
++++||+++|||+||+++|+++...++++||++++..+++|.+++++|++||++.+++.++||+||+++|+||+.|++.+
T Consensus 223 ~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l 302 (503)
T PLN02849 223 YIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTI 302 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHH
Confidence 99999999999999999999754446799999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHhhhcCCccEEEEecCCCceeccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHH
Q 009642 329 GSRLPNFSKTESEMLKGSYDFLGINYYAPMYAEDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGI 408 (530)
Q Consensus 329 ~~~lp~ft~ed~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL 408 (530)
++++|.|+++|+++|++++||+|||||++.+|+...........+.+... . +.+....+++|| +|+|+||
T Consensus 303 ~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~gw-~i~P~Gl 372 (503)
T PLN02849 303 GSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSD--------M-GVSLGKFSAFEY-AVAPWAM 372 (503)
T ss_pred hcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccc--------c-CCCCCccCCCCC-eEChHHH
Confidence 98999999999999999999999999999999753210000000011000 0 112223457889 9999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCCcccccccccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCCCc
Q 009642 409 KDFMLYIKSKYNNPAIYITENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAGFT 488 (530)
Q Consensus 409 ~~~L~~i~~rY~~ppI~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~ 488 (530)
+++|+++++||++|||||||||++..++ .+++++|++||+||++||++|++||+|||||+|||+|||||||||.+||+
T Consensus 373 ~~~L~~~~~rY~~pPi~ITENG~~~~d~--~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~ 450 (503)
T PLN02849 373 ESVLEYIKQSYGNPPVYILENGTPMKQD--LQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYE 450 (503)
T ss_pred HHHHHHHHHhcCCCCEEEeCCCCCccCC--CCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhcccc
Confidence 9999999999999889999999998764 45689999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeCCC-CccccccchHHHHHHhhcCCC
Q 009642 489 VGFGMVYVDHKD-NLQRYPKDSFFWYKSFLAPPK 521 (530)
Q Consensus 489 ~rfGL~~VD~~~-~~~R~pK~S~~~y~~ii~~~~ 521 (530)
+|||||+||++| +++|+||+|++||+++|++|+
T Consensus 451 ~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~~ 484 (503)
T PLN02849 451 FSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGNS 484 (503)
T ss_pred CccceEEECCCCCCcceecccHHHHHHHHHHhCC
Confidence 999999999997 469999999999999999986
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1e-131 Score=1067.83 Aligned_cols=460 Identities=49% Similarity=0.932 Sum_probs=406.2
Q ss_pred CCcCCCCCCCeeeeeeccccccCCCCCCCCCCcccccccccCCCcccCCCCCccccchhhchHHHHHHHHHcCCCeEEec
Q 009642 43 INRSNFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKIHDGSNANVAIDFYHRYKEDIKLMKETGLDSFRFS 122 (530)
Q Consensus 43 ~~~~~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~r~~eDi~l~k~lG~~~~R~s 122 (530)
+.+.+||++|+||+|||||||||++++||||+|+||.|++ ++ ..+..++++||||||||+|||+|||+||+|+||||
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~--~~-~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfS 102 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH--AG-HSGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFS 102 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc--cC-cCCCCCCcccccHHHhhHHHHHHHHHcCCCeEEee
Confidence 3346799999999999999999999999999999999987 34 22224789999999999999999999999999999
Q ss_pred ccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHhcC
Q 009642 123 ISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFGD 202 (530)
Q Consensus 123 i~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~d 202 (530)
|+||||+|+|+ |.+|++||+||+++|++|+++||+|||||+|||+|+||++++|||+|+++++.|++||++|+++|||
T Consensus 103 IsWsRI~P~G~--g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgd 180 (497)
T PLN02998 103 ISWSRLLPSGR--GPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGD 180 (497)
T ss_pred ccHHhcCcCCC--CCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 99999999985 8899999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCccEEEEe
Q 009642 203 RVKQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKYQGHQKGEIGITI 282 (530)
Q Consensus 203 ~V~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~~ 282 (530)
+|++|+|||||++++..||..|.+|||.+.......|..+++.++.++++||+++|||+||+++|+.++..|+++||+++
T Consensus 181 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~ 260 (497)
T PLN02998 181 RVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISV 260 (497)
T ss_pred cCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence 99999999999999999999999999964421111255556666789999999999999999999986555789999999
Q ss_pred eCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCCCCCCChhHHhhhcCCccEEEEecCCCceecc
Q 009642 283 VTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSRLPNFSKTESEMLKGSYDFLGINYYAPMYAED 362 (530)
Q Consensus 283 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYt~~~v~~ 362 (530)
+..+++|.+++++|++||++.+++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||+|||||++.+|+.
T Consensus 261 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~ 340 (497)
T PLN02998 261 YTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKD 340 (497)
T ss_pred eCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCccccc
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999975
Q ss_pred CCCC-CCCCCCccCCCCCcceecccCCCCCCCCCC-CCCCcccChHHHHHHHHHHHHhcCCCcEEEEcCCCCCCcccccc
Q 009642 363 SSSS-TSNSDTISYSTDSRVTLSTHKDGNPIGTPT-TLPWIFLYPKGIKDFMLYIKSKYNNPAIYITENGVADAKDVEQA 440 (530)
Q Consensus 363 ~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~w~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~~~~~~~ 440 (530)
.... .+. ...+..+..... .+.+..+ .++| +|+|+||+++|+++++||++|||||||||+++.+ +
T Consensus 341 ~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~ 407 (497)
T PLN02998 341 NSSSLKPN--LQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPH----S 407 (497)
T ss_pred CCCcCCCC--cccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC----C
Confidence 3211 000 011101100000 0111223 3667 9999999999999999999988999999999764 4
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCCCccceeEEEEeCCC-CccccccchHHHHHHhhcC
Q 009642 441 QARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAGFTVGFGMVYVDHKD-NLQRYPKDSFFWYKSFLAP 519 (530)
Q Consensus 441 g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~~R~pK~S~~~y~~ii~~ 519 (530)
++++|++||+||++||.+|++||+|||||+|||+|||+|||||.+||++|||||+||++| +++|+||+|++||+++|++
T Consensus 408 g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~ 487 (497)
T PLN02998 408 SSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKG 487 (497)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHhc
Confidence 789999999999999999999999999999999999999999999999999999999997 4799999999999999997
Q ss_pred C
Q 009642 520 P 520 (530)
Q Consensus 520 ~ 520 (530)
+
T Consensus 488 ~ 488 (497)
T PLN02998 488 T 488 (497)
T ss_pred c
Confidence 5
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.6e-131 Score=1068.04 Aligned_cols=465 Identities=44% Similarity=0.815 Sum_probs=411.0
Q ss_pred CCcCCCCCCCeeeeeeccccccCCCCCCCCCCcccccccccCCCcccCCCCCccccchhhchHHHHHHHHHcCCCeEEec
Q 009642 43 INRSNFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKIHDGSNANVAIDFYHRYKEDIKLMKETGLDSFRFS 122 (530)
Q Consensus 43 ~~~~~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~r~~eDi~l~k~lG~~~~R~s 122 (530)
+.+.+||++|+||+|||||||||++++||||+|+||.|++. .++.++++||||||||+|||+|||+||+|+||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~-----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfS 97 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC-----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFS 97 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec-----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEe
Confidence 33467999999999999999999999999999999999872 2346889999999999999999999999999999
Q ss_pred ccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHhcC
Q 009642 123 ISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFGD 202 (530)
Q Consensus 123 i~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~d 202 (530)
|+||||+|+|+ |.+|++||+||+++||+|+++||+|||||+|||+|+||++++|||.|+++++.|++||+.|+++|||
T Consensus 98 IsWsRI~P~G~--g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgd 175 (504)
T PLN02814 98 ISWSRLIPNGR--GLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGE 175 (504)
T ss_pred ccHhhcCcCCC--CCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCC
Confidence 99999999985 8999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCccEEEEe
Q 009642 203 RVKQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKYQGHQKGEIGITI 282 (530)
Q Consensus 203 ~V~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~~ 282 (530)
+|++|+|||||++++..||..|.. ||.++......|.++++.++.++++||+++|||+||+++|+.++..++++||+++
T Consensus 176 rVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~ 254 (504)
T PLN02814 176 DVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSI 254 (504)
T ss_pred cCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 999999999999999999999985 8864421011354455556789999999999999999999986656789999999
Q ss_pred eCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCCCCCCChhHHhhhcCCccEEEEecCCCceecc
Q 009642 283 VTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSRLPNFSKTESEMLKGSYDFLGINYYAPMYAED 362 (530)
Q Consensus 283 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYt~~~v~~ 362 (530)
+..+++|.+++++|++||++.+++.++||+||+++|+||+.|++++++++|.|+++|+++|++++||||||||++.+|+.
T Consensus 255 ~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~ 334 (504)
T PLN02814 255 FAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTN 334 (504)
T ss_pred eCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCC-CCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccccccc
Q 009642 363 SSSSTS-NSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIYITENGVADAKDVEQAQ 441 (530)
Q Consensus 363 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~~~~~~~g 441 (530)
...... .+....+..+.+. . ..+..+.+++|| +|+|+||+.+|+++++||++|||||||||++..+ ++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~g 403 (504)
T PLN02814 335 RPAPSIFPSMNEGFFTDMGA----Y--IISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKH----DS 403 (504)
T ss_pred CCCCCcccccCCCccccccc----c--cCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC----CC
Confidence 321100 0000011000000 0 012235677899 8999999999999999999988999999999764 57
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCCCccceeEEEEeCCC-CccccccchHHHHHHhhcCC
Q 009642 442 ARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAGFTVGFGMVYVDHKD-NLQRYPKDSFFWYKSFLAPP 520 (530)
Q Consensus 442 ~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~~R~pK~S~~~y~~ii~~~ 520 (530)
+++|++||+||++||++|++||+|||||+|||+|||||||||.+||++|||||+||++| +++|+||+|++||+++|+++
T Consensus 404 ~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~ 483 (504)
T PLN02814 404 TLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGT 483 (504)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999997 46999999999999999999
Q ss_pred CCCCCC
Q 009642 521 KSPANA 526 (530)
Q Consensus 521 ~~~~~~ 526 (530)
+.|++-
T Consensus 484 ~~~~~~ 489 (504)
T PLN02814 484 IDVASQ 489 (504)
T ss_pred CChhcc
Confidence 988854
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-130 Score=1022.79 Aligned_cols=449 Identities=39% Similarity=0.745 Sum_probs=406.3
Q ss_pred CCCCCCCeeeeeeccccccCCCCCCCCCCcccccccccC-CCcccCCCCCccccchhhchHHHHHHHHHcCCCeEEeccc
Q 009642 46 SNFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNH-PEKIHDGSNANVAIDFYHRYKEDIKLMKETGLDSFRFSIS 124 (530)
Q Consensus 46 ~~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~-~~~~~~~~~~~~a~d~y~r~~eDi~l~k~lG~~~~R~si~ 124 (530)
.+||++|+||+||||+|+||++++||||+|+||+|.+.. |+++..+..+++||||||||+|||+|||+||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 479999999999999999999999999999999999854 6777788899999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHhcCcc
Q 009642 125 WPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFGDRV 204 (530)
Q Consensus 125 W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V 204 (530)
||||+|+++ .+.+|++||+||+++||+|+++||+|+|||+|||+|+||++++|||.|++++++|++||++||++|||+|
T Consensus 82 WsRIfP~g~-~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkV 160 (460)
T COG2723 82 WSRIFPNGD-GGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKV 160 (460)
T ss_pred EEEeecCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999985 1389999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred cEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCccEEEEeeC
Q 009642 205 KQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKYQGHQKGEIGITIVT 284 (530)
Q Consensus 205 ~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~~~~ 284 (530)
++|+||||||+++..||+.|.+||+..+. +..+||+||+++|||+||+++|+..++ .+||++++.
T Consensus 161 k~W~TFNE~n~~~~~~y~~~~~~p~~~~~------------~~~~qa~hh~~lA~A~avk~~~~~~~~---~kIG~~~~~ 225 (460)
T COG2723 161 KYWFTFNEPNVVVELGYLYGGHPPGIVDP------------KAAYQVAHHMLLAHALAVKAIKKINPK---GKVGIILNL 225 (460)
T ss_pred eEEEEecchhhhhcccccccccCCCccCH------------HHHHHHHHHHHHHHHHHHHHHHhhCCc---CceEEEecc
Confidence 99999999999999999999999997653 677999999999999999999998662 399999999
Q ss_pred cccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCC--CCCCChhHHhhhcC-CccEEEEecCCCceec
Q 009642 285 QWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSR--LPNFSKTESEMLKG-SYDFLGINYYAPMYAE 361 (530)
Q Consensus 285 ~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~--lp~ft~ed~~~ikg-~~DFiGiNyYt~~~v~ 361 (530)
.+.||.+++|+|+.||+..+.+.|++|+||+++|+||..+.+.+++. +|.++++|+++||. ++||||||||++..|.
T Consensus 226 ~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~ 305 (460)
T COG2723 226 TPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVK 305 (460)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEe
Confidence 99999999999999999999999999999999999999999999875 79999999999995 7999999999954444
Q ss_pred cCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccccccc
Q 009642 362 DSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIYITENGVADAKDVEQAQ 441 (530)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~~~~~~~g 441 (530)
....... ..+.... .....-.|..+.+++|| +|||+||+.+|+++++||+ +||||||||++..++.+.++
T Consensus 306 ~~~~~~~----~~~~~~~----~~~~~~~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~~~~~ 375 (460)
T COG2723 306 AAEPRYV----SGYGPGG----FFTSVPNPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKDEVDFDG 375 (460)
T ss_pred eccCCcC----Ccccccc----cccccCCCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCcccccccCC
Confidence 3221100 0110000 00111135556778999 9999999999999999999 56999999999988865555
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCCCccceeEEEEeCCCCccccccchHHHHHHhhcCCC
Q 009642 442 ARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAGFTVGFGMVYVDHKDNLQRYPKDSFFWYKSFLAPPK 521 (530)
Q Consensus 442 ~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~~ 521 (530)
|+|++||+||++||.+|++||+|||+|+||++||+|||+||.+||++||||++||++|+++|+||+|++|||+||++||
T Consensus 376 -i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~sng 454 (460)
T COG2723 376 -INDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIESNG 454 (460)
T ss_pred -cCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999998569999999999999999998
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.4e-128 Score=1042.39 Aligned_cols=450 Identities=36% Similarity=0.665 Sum_probs=395.9
Q ss_pred CCCCCCCeeeeeeccccccCCCCCCCCCCcccccccccCCCcccCCCCCccccchhhchHHHHHHHHHcCCCeEEecccC
Q 009642 46 SNFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKIHDGSNANVAIDFYHRYKEDIKLMKETGLDSFRFSISW 125 (530)
Q Consensus 46 ~~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~r~~eDi~l~k~lG~~~~R~si~W 125 (530)
.+||+||+||+|||||||||++++||||+|+||.|++ .|+++ ++++||||||||+|||+|||+||+|+|||||+|
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~-~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsW 77 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLE-ENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAW 77 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccc-cCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccH
Confidence 3699999999999999999999999999999999987 45653 688999999999999999999999999999999
Q ss_pred CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHhcCccc
Q 009642 126 PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFGDRVK 205 (530)
Q Consensus 126 ~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~ 205 (530)
|||+|+++ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |+
T Consensus 78 sRI~P~G~--g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk 153 (469)
T PRK13511 78 SRIFPDGY--GEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VK 153 (469)
T ss_pred hhcCcCCC--CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 99999986 88999999999999999999999999999999999999986 9999999999999999999999999 99
Q ss_pred EEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCccEEEEeeCc
Q 009642 206 QWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKYQGHQKGEIGITIVTQ 285 (530)
Q Consensus 206 ~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~~~~~ 285 (530)
+|+|||||++++..||..|.+|||++.. .++.++++||+++|||+||++||+.. |+++||++++..
T Consensus 154 ~W~T~NEP~~~~~~gy~~G~~~Pg~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~ 219 (469)
T PRK13511 154 YWTTFNEIGPIGDGQYLVGKFPPGIKYD-----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALP 219 (469)
T ss_pred EEEEccchhhhhhcchhhcccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCc
Confidence 9999999999999999999999997421 13679999999999999999999864 579999999999
Q ss_pred ccccCC-CCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhc----C--CCCCCChhHHhhhcC---CccEEEEecC
Q 009642 286 WFIPKT-ESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVG----S--RLPNFSKTESEMLKG---SYDFLGINYY 355 (530)
Q Consensus 286 ~~~P~~-~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~----~--~lp~ft~ed~~~ikg---~~DFiGiNyY 355 (530)
+++|.+ ++++|++||++.+++.++||+||+++|+||+.|++.++ + ..|.||++|++.|++ ++||||||||
T Consensus 220 ~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyY 299 (469)
T PRK13511 220 TKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYY 299 (469)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechh
Confidence 999998 88999999999999999999999999999999998774 1 124899999999974 6899999999
Q ss_pred CCceeccCCCCCCCCCCccCCCCCcce---ec--ccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCC-CcEEEEcC
Q 009642 356 APMYAEDSSSSTSNSDTISYSTDSRVT---LS--THKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNN-PAIYITEN 429 (530)
Q Consensus 356 t~~~v~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~-ppI~ITEN 429 (530)
++.+|+......+ +..... ...... .. ......+..+.++++| +|+|+||+++|++++++|++ ||||||||
T Consensus 300 t~~~v~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITEN 376 (469)
T PRK13511 300 MSDWMRAYDGETE-IIHNGT-GEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITEN 376 (469)
T ss_pred hcceeecCCCccc-cccCCC-CccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecC
Confidence 9999975321100 000000 000000 00 0000112224567899 89999999999999999997 67999999
Q ss_pred CCCCCcccccccccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCCCccceeEEEEeCCCCccccccch
Q 009642 430 GVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAGFTVGFGMVYVDHKDNLQRYPKDS 509 (530)
Q Consensus 430 G~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S 509 (530)
|++..++.+.+++++|++||+||++||++|++||++||||+|||+|||+|||||.+||++|||||+||++| ++|+||+|
T Consensus 377 G~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~-~~R~pK~S 455 (469)
T PRK13511 377 GLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFET-QERYPKKS 455 (469)
T ss_pred CcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCc-CccccccH
Confidence 99987765556789999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHhhcCCCC
Q 009642 510 FFWYKSFLAPPKS 522 (530)
Q Consensus 510 ~~~y~~ii~~~~~ 522 (530)
++||+++|++|++
T Consensus 456 ~~wy~~~i~~~~~ 468 (469)
T PRK13511 456 AYWYKKLAETKVI 468 (469)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999986
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=4.5e-128 Score=1036.25 Aligned_cols=448 Identities=37% Similarity=0.655 Sum_probs=394.9
Q ss_pred CCCCCCCeeeeeeccccccCCCCCCCCCCcccccccccCCCcccCCCCCccccchhhchHHHHHHHHHcCCCeEEecccC
Q 009642 46 SNFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKIHDGSNANVAIDFYHRYKEDIKLMKETGLDSFRFSISW 125 (530)
Q Consensus 46 ~~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~r~~eDi~l~k~lG~~~~R~si~W 125 (530)
.+||+||+||+|||||||||++++||||+|+||.+.+ .|++ .++++||||||||+|||+|||+||+|+|||||+|
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~-~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsW 76 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLE-DNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAW 76 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhcccc-CCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecch
Confidence 3599999999999999999999999999999999887 4554 2678999999999999999999999999999999
Q ss_pred CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHhcCccc
Q 009642 126 PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFGDRVK 205 (530)
Q Consensus 126 ~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~ 205 (530)
|||+|++. |.+|++||+||+++|++|+++||+|||||+|||+|+||+++ |||.|+++++.|++||+.||++||+ |+
T Consensus 77 sRI~P~g~--~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk 152 (467)
T TIGR01233 77 SRIFPTGY--GEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VN 152 (467)
T ss_pred hhccCCCC--CCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 99999985 88999999999999999999999999999999999999986 9999999999999999999999998 99
Q ss_pred EEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCccEEEEeeCc
Q 009642 206 QWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKYQGHQKGEIGITIVTQ 285 (530)
Q Consensus 206 ~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~~~~~ 285 (530)
+|+|||||++++..||+.|.+|||.+.. .++.++++||+++|||+||+++|++. ++++||++++..
T Consensus 153 ~WiT~NEP~~~~~~gy~~G~~~Pg~~~~-----------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~ 218 (467)
T TIGR01233 153 YWTTFNEIGPIGDGQYLVGKFPPGIKYD-----------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALP 218 (467)
T ss_pred EEEEecchhhhhhccchhcccCCCccch-----------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCc
Confidence 9999999999999999999999996321 13579999999999999999999864 479999999999
Q ss_pred ccccCC-CCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcC----C--CCCCChhHHhhh---cCCccEEEEecC
Q 009642 286 WFIPKT-ESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGS----R--LPNFSKTESEML---KGSYDFLGINYY 355 (530)
Q Consensus 286 ~~~P~~-~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~----~--lp~ft~ed~~~i---kg~~DFiGiNyY 355 (530)
+++|.+ ++++|++||++.+.+.++||+||+++|+||+.|++.++. + +|.||++|+++| ++++||||||||
T Consensus 219 ~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyY 298 (467)
T TIGR01233 219 TKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYY 298 (467)
T ss_pred eeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccc
Confidence 999998 889999999999999999999999999999999998753 2 378999999999 489999999999
Q ss_pred CCceeccCCCCCC---CCCC---ccCCCCCcceecccCCCCC-CCCCCCCCCcccChHHHHHHHHHHHHhcCC-CcEEEE
Q 009642 356 APMYAEDSSSSTS---NSDT---ISYSTDSRVTLSTHKDGNP-IGTPTTLPWIFLYPKGIKDFMLYIKSKYNN-PAIYIT 427 (530)
Q Consensus 356 t~~~v~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~g~~-~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~-ppI~IT 427 (530)
++.+|+....... .+.. .......++. ....+ ..+.+++|| +|+|+||+++|+++++||++ ||||||
T Consensus 299 t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~It 373 (467)
T TIGR01233 299 MSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYIT 373 (467)
T ss_pred cceeeccCCCccccccCCccccCcccccCCCcc----cccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEe
Confidence 9999975311100 0000 0000000000 00011 124567899 89999999999999999997 779999
Q ss_pred cCCCCCCcccccccccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCCCccceeEEEEeCCCCcccccc
Q 009642 428 ENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAGFTVGFGMVYVDHKDNLQRYPK 507 (530)
Q Consensus 428 ENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK 507 (530)
|||++..++.+ +++++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++| ++|+||
T Consensus 374 ENG~~~~d~~~-~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t-~~R~~K 451 (467)
T TIGR01233 374 ENGLGYKDEFV-DNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDT-QERYPK 451 (467)
T ss_pred CCCCCCCCCCC-CCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCC-Cccccc
Confidence 99999877653 6889999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred chHHHHHHhhcCCCCC
Q 009642 508 DSFFWYKSFLAPPKSP 523 (530)
Q Consensus 508 ~S~~~y~~ii~~~~~~ 523 (530)
+|++||+++|++|-+|
T Consensus 452 ~S~~wy~~ii~~~~~~ 467 (467)
T TIGR01233 452 KSAHWYKKLAETQVIE 467 (467)
T ss_pred cHHHHHHHHHHhcCCC
Confidence 9999999999998765
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.8e-127 Score=1033.39 Aligned_cols=450 Identities=29% Similarity=0.537 Sum_probs=395.5
Q ss_pred cCCCCCCCeeeeeeccccccCCCCCCCCCCcccccccccCCCccc--C----------C--CCCccccchhhchHHHHHH
Q 009642 45 RSNFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKIH--D----------G--SNANVAIDFYHRYKEDIKL 110 (530)
Q Consensus 45 ~~~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~--~----------~--~~~~~a~d~y~r~~eDi~l 110 (530)
..+||++|+||+|||||||||++++||||+|+||.|++ .|+++. + + .++++||||||||+|||+|
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~L 81 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPI-GEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIAL 81 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-CcCcccccccccccccccccccCCCCcccchHHhhHHHHHH
Confidence 35799999999999999999999999999999999987 455541 1 1 1578999999999999999
Q ss_pred HHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHH
Q 009642 111 MKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFG 190 (530)
Q Consensus 111 ~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~ 190 (530)
||+||+|+|||||+||||+|+|. .|.+|++||+||+++|++|+++||+|||||+|||+|+||++++|||+|++++++|+
T Consensus 82 m~~lG~~aYRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~ 160 (478)
T PRK09593 82 FAEMGFKTYRMSIAWTRIFPKGD-ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYE 160 (478)
T ss_pred HHHcCCCEEEEecchhhcccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHH
Confidence 99999999999999999999974 25699999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHhcCcccEEEeccCCccccccccc-ccc-cCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 009642 191 DYADFCFKTFGDRVKQWVTMAEPNSISIGGYA-IGV-YAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKE 268 (530)
Q Consensus 191 ~ya~~~~~~~~d~V~~W~t~NEp~~~~~~~y~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~ 268 (530)
+||+.|+++|||+|++|+|||||++++..||. .|. +|||... ..+.++++||+++|||+||++||+
T Consensus 161 ~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~------------~~~~~~a~h~~llAHa~A~~~~~~ 228 (478)
T PRK09593 161 RLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK------------EQVKYQAAHHELVASAIATKIAHE 228 (478)
T ss_pred HHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch------------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888876 454 3676421 245799999999999999999998
Q ss_pred hccCCCCccEEEEeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcC--CCCCCChhHHhhhc-C
Q 009642 269 KYQGHQKGEIGITIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGS--RLPNFSKTESEMLK-G 345 (530)
Q Consensus 269 ~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~--~lp~ft~ed~~~ik-g 345 (530)
.. |+++||++++..+++|.+++++|++||++.+ +.++||+||+++|+||+.|++.+++ .+|.|+++|+++|+ +
T Consensus 229 ~~---~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g 304 (478)
T PRK09593 229 VD---PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKEN 304 (478)
T ss_pred hC---CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcC
Confidence 64 4789999999999999999999999999887 5588999999999999999999975 46889999999997 8
Q ss_pred CccEEEEecCCCceeccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEE
Q 009642 346 SYDFLGINYYAPMYAEDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIY 425 (530)
Q Consensus 346 ~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~ 425 (530)
++||||||||++.+|+........ . ... .+ ...+ .|..+.+++|| +|+|+||+++|+++++||++| ||
T Consensus 305 ~~DFlGiNyYt~~~v~~~~~~~~~----~-~~~-~~--~~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ 372 (478)
T PRK09593 305 TVDFISFSYYSSRVASGDPKVNEK----T-AGN-IF--ASLK--NPYLKASEWGW-QIDPLGLRITLNTIWDRYQKP-MF 372 (478)
T ss_pred CCCEEEEecccCcccccCCCCCCC----C-CCC-cc--cccc--CCCcccCCCCC-EECHHHHHHHHHHHHHHcCCC-EE
Confidence 999999999999999753211010 0 000 00 0001 14445677899 899999999999999999985 99
Q ss_pred EEcCCCCCCcccccccccCChHHHHHHHHHHHHHHHHHH-cCCceEEEEEecccccccccCC-CccceeEEEEeCCC---
Q 009642 426 ITENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIK-EGVHVKGYYAWSFLDNFEWDAG-FTVGFGMVYVDHKD--- 500 (530)
Q Consensus 426 ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~--- 500 (530)
|||||++..++.+.+++++|++||+||++||++|++||+ +||||+|||+|||+|||||.+| |++|||||+||++|
T Consensus 373 ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~ 452 (478)
T PRK09593 373 IVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGK 452 (478)
T ss_pred EEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCC
Confidence 999999988766667899999999999999999999995 9999999999999999999999 99999999999996
Q ss_pred -CccccccchHHHHHHhhcCCCCCC
Q 009642 501 -NLQRYPKDSFFWYKSFLAPPKSPA 524 (530)
Q Consensus 501 -~~~R~pK~S~~~y~~ii~~~~~~~ 524 (530)
+++|+||+|++||+++|++|+.|-
T Consensus 453 ~~~~R~pK~S~~wy~~ii~~~~~~~ 477 (478)
T PRK09593 453 GTLKRSKKKSFDWYKKVIASNGEDL 477 (478)
T ss_pred cccceecccHHHHHHHHHHhCCcCC
Confidence 379999999999999999988753
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=3.5e-127 Score=1030.67 Aligned_cols=447 Identities=30% Similarity=0.582 Sum_probs=389.5
Q ss_pred CCCCCCeeeeeeccccccCCCCCCCCCCccccccc---ccCCCccc----CCC--CCccccchhhchHHHHHHHHHcCCC
Q 009642 47 NFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFA---NNHPEKIH----DGS--NANVAIDFYHRYKEDIKLMKETGLD 117 (530)
Q Consensus 47 ~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~---~~~~~~~~----~~~--~~~~a~d~y~r~~eDi~l~k~lG~~ 117 (530)
+||++|+||+|||||||||++++||||+|+||.|+ +..|+++. ++. ++++||||||||+|||+|||+||+|
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 42355553 222 5789999999999999999999999
Q ss_pred eEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHH
Q 009642 118 SFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCF 197 (530)
Q Consensus 118 ~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~ 197 (530)
+|||||+||||+|+|. .|.+|++||+||+++|++|+++||+|||||+|||+|+||++++|||+|+++++.|++||+.||
T Consensus 83 ~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f 161 (476)
T PRK09589 83 CFRTSIAWTRIFPQGD-ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVF 161 (476)
T ss_pred EEEeccchhhcCcCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHH
Confidence 9999999999999975 256899999999999999999999999999999999999998999999999999999999999
Q ss_pred HHhcCcccEEEeccCCcccccc-----ccc-ccc-cCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 009642 198 KTFGDRVKQWVTMAEPNSISIG-----GYA-IGV-YAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKY 270 (530)
Q Consensus 198 ~~~~d~V~~W~t~NEp~~~~~~-----~y~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~ 270 (530)
++|||+|++|+|||||++++.. ||. .|. +|||... ....++++||+++|||+||+++|+..
T Consensus 162 ~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~------------~~~~~~~~h~~llAha~A~~~~~~~~ 229 (476)
T PRK09589 162 TRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR------------EQIMYQAAHYELVASALAVKTGHEIN 229 (476)
T ss_pred HHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch------------hHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998766 444 343 3565321 13468999999999999999999875
Q ss_pred cCCCCccEEEEeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCC--CCCCChhHHhhh-cCCc
Q 009642 271 QGHQKGEIGITIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSR--LPNFSKTESEML-KGSY 347 (530)
Q Consensus 271 ~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~--lp~ft~ed~~~i-kg~~ 347 (530)
+ +++||++++..+++|.+++++|++||++.+.+ +.||+||+++|+||+.|++.++++ .|.||++|++.| ++++
T Consensus 230 ~---~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~ 305 (476)
T PRK09589 230 P---DFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCV 305 (476)
T ss_pred C---CCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCC
Confidence 4 68999999999999999899999999998854 679999999999999999999864 488999999999 5899
Q ss_pred cEEEEecCCCceeccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEEEE
Q 009642 348 DFLGINYYAPMYAEDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIYIT 427 (530)
Q Consensus 348 DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~IT 427 (530)
||||||||++.+|+..... + ...+..+. ....+ |..+.++++| +|+|+||+++|+++++||++| ||||
T Consensus 306 DFlGiNyYts~~v~~~~~~-~---~~~~~~~~----~~~~~--~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~~P-i~It 373 (476)
T PRK09589 306 DYIGFSYYMSFATKFHEDN-P---QLDYVETR----DLVSN--PYVKASEWGW-QIDPAGLRYSLNWFWDHYQLP-LFIV 373 (476)
T ss_pred CEEEEecccCcccccCCCC-C---CCCccccc----ccccC--CCcccCCCCC-ccCcHHHHHHHHHHHHhcCCC-EEEE
Confidence 9999999999999752110 0 00000000 00111 3345567899 899999999999999999975 9999
Q ss_pred cCCCCCCcccccccccCChHHHHHHHHHHHHHHHHH-HcCCceEEEEEecccccccccCC-CccceeEEEEeCCC----C
Q 009642 428 ENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAI-KEGVHVKGYYAWSFLDNFEWDAG-FTVGFGMVYVDHKD----N 501 (530)
Q Consensus 428 ENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai-~dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~----~ 501 (530)
|||++..++.+.+++++|++||+||++||.+|++|| +|||||+|||+|||||||||.+| |++|||||+||++| +
T Consensus 374 ENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t 453 (476)
T PRK09589 374 ENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGT 453 (476)
T ss_pred eCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcc
Confidence 999998887667789999999999999999999999 89999999999999999999999 99999999999996 3
Q ss_pred ccccccchHHHHHHhhcCCCC
Q 009642 502 LQRYPKDSFFWYKSFLAPPKS 522 (530)
Q Consensus 502 ~~R~pK~S~~~y~~ii~~~~~ 522 (530)
++|+||+|++||+++|++|+.
T Consensus 454 ~~R~pK~S~~wy~~~i~~ng~ 474 (476)
T PRK09589 454 LERSRKKSFYWYRDVIANNGE 474 (476)
T ss_pred cccccccHHHHHHHHHHhcCC
Confidence 699999999999999998764
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=7.2e-129 Score=1044.50 Aligned_cols=449 Identities=51% Similarity=0.948 Sum_probs=390.2
Q ss_pred CCCCCCCeeeeeeccccccCCCCCCCCCCcccccccccCCCcccCCCCCccccchhhchHHHHHHHHHcCCCeEEecccC
Q 009642 46 SNFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKIHDGSNANVAIDFYHRYKEDIKLMKETGLDSFRFSISW 125 (530)
Q Consensus 46 ~~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~r~~eDi~l~k~lG~~~~R~si~W 125 (530)
.+||++|+||+|||||||||++++||||+|+||.|++ .|+++.++.++++||||||||+|||+|||+||+++|||||+|
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~-~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCH-EPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHH-STTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCccccccccc-ccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 5799999999999999999999999999999999999 588888899999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHhcCccc
Q 009642 126 PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFGDRVK 205 (530)
Q Consensus 126 ~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~ 205 (530)
+||+|+|. .|.+|++|++||+++|++|+++||+|||||+|||+|+||++ +|||.|+++++.|++||++|+++|||+|+
T Consensus 82 ~Ri~P~g~-~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~ 159 (455)
T PF00232_consen 82 SRIFPDGF-EGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVK 159 (455)
T ss_dssp HHHSTTSS-SSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBS
T ss_pred hheeeccc-ccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999972 29999999999999999999999999999999999999998 79999999999999999999999999999
Q ss_pred EEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCccEEEEeeCc
Q 009642 206 QWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKYQGHQKGEIGITIVTQ 285 (530)
Q Consensus 206 ~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~~~~~ 285 (530)
+|+|||||++++..||+.|.+|||..+ ..+.++++||+++||++||+++|+++ ++++||++++..
T Consensus 160 ~w~T~NEp~~~~~~~y~~g~~~p~~~~------------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~ 224 (455)
T PF00232_consen 160 YWITFNEPNVFALLGYLYGGFPPGRDS------------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFS 224 (455)
T ss_dssp EEEEEETHHHHHHHHHTSSSSTTCSST------------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEE
T ss_pred eEEeccccceeeccccccccccccccc------------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEecccccc
Confidence 999999999999999999999999654 26789999999999999999999987 479999999999
Q ss_pred ccccCCCCHHHH-HHHHHHHhhhcccccchhccCCCchHHHhhhcCC--CCCCChhHHhhhcCCccEEEEecCCCceecc
Q 009642 286 WFIPKTESPADQ-ETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSR--LPNFSKTESEMLKGSYDFLGINYYAPMYAED 362 (530)
Q Consensus 286 ~~~P~~~~~~D~-~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~--lp~ft~ed~~~ikg~~DFiGiNyYt~~~v~~ 362 (530)
+++|.++++.|. +||++.+++.|+||+||+++|+||..|+++++++ +|.||++|++.|++++||+|||||++.+|+.
T Consensus 225 ~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~ 304 (455)
T PF00232_consen 225 PFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRA 304 (455)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEE
T ss_pred ccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeecc
Confidence 999999987766 8999999999999999999999999999999987 9999999999999999999999999999998
Q ss_pred CCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEEEEcCCCCCCcccccccc
Q 009642 363 SSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIYITENGVADAKDVEQAQA 442 (530)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~~~~~~~g~ 442 (530)
....... . ......... ... .+.++.++++| +++|+||+++|++++++|++|||||||||+++.++... ++
T Consensus 305 ~~~~~~~--~-~~~~~~~~~--~~~--~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~-~~ 375 (455)
T PF00232_consen 305 DPNPSSP--P-SYDSDAPFG--QPY--NPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDD-GK 375 (455)
T ss_dssp SSSSTSS--T-THEEEESEE--EEC--ETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTT-SH
T ss_pred Ccccccc--c-cccCCcccc--ccc--cccccccccCc-ccccchHhhhhhhhccccCCCcEEEecccccccccccc-cC
Confidence 6532111 0 110000000 000 23445688999 89999999999999999998999999999999876544 89
Q ss_pred cCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCCCccceeEEEEe-CCCCccccccchHHHHHHhhcCCC
Q 009642 443 RKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAGFTVGFGMVYVD-HKDNLQRYPKDSFFWYKSFLAPPK 521 (530)
Q Consensus 443 i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD-~~~~~~R~pK~S~~~y~~ii~~~~ 521 (530)
++|.+||+||++||.+|++||+|||||+|||+|||||||||.+||++|||||+|| +.| ++|+||+|++||+++|++||
T Consensus 376 v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~-~~R~pK~S~~~y~~~i~~ng 454 (455)
T PF00232_consen 376 VDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDT-LKRTPKKSAYWYKDFIRSNG 454 (455)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTT-TEEEEBHHHHHHHHHHHHTE
T ss_pred cCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCC-cCeeeccHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999 555 99999999999999999987
Q ss_pred C
Q 009642 522 S 522 (530)
Q Consensus 522 ~ 522 (530)
+
T Consensus 455 ~ 455 (455)
T PF00232_consen 455 F 455 (455)
T ss_dssp E
T ss_pred C
Confidence 4
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=3.1e-126 Score=1022.63 Aligned_cols=449 Identities=29% Similarity=0.557 Sum_probs=391.2
Q ss_pred CcCCCCCCCeeeeeeccccccCCCCCCCCCCccccccc---ccCCCccc----CC--CCCccccchhhchHHHHHHHHHc
Q 009642 44 NRSNFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFA---NNHPEKIH----DG--SNANVAIDFYHRYKEDIKLMKET 114 (530)
Q Consensus 44 ~~~~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~---~~~~~~~~----~~--~~~~~a~d~y~r~~eDi~l~k~l 114 (530)
++.+||++|+||+|||||||||++++||||+|+||.|+ +..|+++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 35679999999999999999999999999999999998 42355542 22 26789999999999999999999
Q ss_pred CCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHH
Q 009642 115 GLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYAD 194 (530)
Q Consensus 115 G~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~ 194 (530)
|+|+|||||+||||+|+|. .|.+|++|++||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++||+
T Consensus 82 G~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGD-EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred CCCEEEecccceeeccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 9999999999999999975 256899999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHhcCcccEEEeccCCccc-----ccccccc-ccc-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 009642 195 FCFKTFGDRVKQWVTMAEPNSI-----SIGGYAI-GVY-APGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYK 267 (530)
Q Consensus 195 ~~~~~~~d~V~~W~t~NEp~~~-----~~~~y~~-G~~-~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r 267 (530)
.||++|||+|++|+|||||+++ +..||.. |.+ ||+.. +....++|+||+++|||+||+++|
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~------------~~~~~~~~~h~~llAHa~A~~~~~ 228 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN------------PEETMYQVLHHQFVASALAVKAAR 228 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 6678874 765 45421 114579999999999999999999
Q ss_pred HhccCCCCccEEEEeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCCC--CCCChhHHhhh-c
Q 009642 268 EKYQGHQKGEIGITIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSRL--PNFSKTESEML-K 344 (530)
Q Consensus 268 ~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~l--p~ft~ed~~~i-k 344 (530)
+..+ +++||++++..+++|.+++++|++||++.+. ...+|+||+++|+||+.|++.++++. |.++++|+++| +
T Consensus 229 ~~~~---~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~ 304 (477)
T PRK15014 229 RINP---EMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLRE 304 (477)
T ss_pred HhCC---CCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhc
Confidence 9754 6899999999999999989999999998773 22359999999999999999998764 78999999999 4
Q ss_pred CCccEEEEecCCCceeccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcE
Q 009642 345 GSYDFLGINYYAPMYAEDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAI 424 (530)
Q Consensus 345 g~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI 424 (530)
+++||||||||+|.+|+........ ...+. ...++ |..+.+++|| +|+|+||+.+|+++++||++| |
T Consensus 305 ~~~DFlGiNyYt~~~v~~~~~~~~~--~~~~~-------~~~~~--~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i 371 (477)
T PRK15014 305 GTCDYLGFSYYMTNAVKAEGGTGDA--ISGFE-------GSVPN--PYVKASDWGW-QIDPVGLRYALCELYERYQKP-L 371 (477)
T ss_pred CCCCEEEEcceeCeeeccCCCCCCC--ccccc-------cccCC--CCcccCCCCC-ccCcHHHHHHHHHHHHhcCCC-E
Confidence 8999999999999999753210000 00000 00111 3334567899 899999999999999999985 9
Q ss_pred EEEcCCCCCCcccccccccCChHHHHHHHHHHHHHHHHHH-cCCceEEEEEecccccccccCC-CccceeEEEEeCCC--
Q 009642 425 YITENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIK-EGVHVKGYYAWSFLDNFEWDAG-FTVGFGMVYVDHKD-- 500 (530)
Q Consensus 425 ~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~-- 500 (530)
||||||++..++.+.+++++|++||+||++||++|++||+ |||||+|||+|||||||||.+| |++|||||+||++|
T Consensus 372 ~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~ 451 (477)
T PRK15014 372 FIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDG 451 (477)
T ss_pred EEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCC
Confidence 9999999998776678899999999999999999999995 9999999999999999999999 99999999999996
Q ss_pred --CccccccchHHHHHHhhcCCCC
Q 009642 501 --NLQRYPKDSFFWYKSFLAPPKS 522 (530)
Q Consensus 501 --~~~R~pK~S~~~y~~ii~~~~~ 522 (530)
+++|+||+|++||+++|++|+.
T Consensus 452 ~~~~~R~pK~S~~wy~~ii~~ng~ 475 (477)
T PRK15014 452 TGDMSRSRKKSFNWYKEVIASNGE 475 (477)
T ss_pred CcccceecccHHHHHHHHHHhcCC
Confidence 3799999999999999998864
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=8.2e-126 Score=1017.73 Aligned_cols=447 Identities=31% Similarity=0.569 Sum_probs=397.2
Q ss_pred CCCCCCeeeeeeccccccCCCCCCCCCCcccccccccCCCccc------------CCC--CCccccchhhchHHHHHHHH
Q 009642 47 NFPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKIH------------DGS--NANVAIDFYHRYKEDIKLMK 112 (530)
Q Consensus 47 ~fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~------------~~~--~~~~a~d~y~r~~eDi~l~k 112 (530)
+||++|+||+|||||||||++++||||+|+||.|++ .|+++. ++. ++++||||||||+|||+|||
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~ 81 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPH-GEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMA 81 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhcccc-CCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHH
Confidence 599999999999999999999999999999999998 466552 221 57899999999999999999
Q ss_pred HcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHH
Q 009642 113 ETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDY 192 (530)
Q Consensus 113 ~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~y 192 (530)
+||+|+|||||+|+||+|+++ .+.+|++|++||+++|++|+++||+|||||+|||+|+||++++|||+|+++++.|++|
T Consensus 82 ~lG~~~yR~si~WsRi~P~g~-~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~y 160 (474)
T PRK09852 82 EMGFKVFRTSIAWSRLFPQGD-ELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRY 160 (474)
T ss_pred HcCCCeEEeeceeeeeeeCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999975 2568999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHhcCcccEEEeccCCccccccccc-ccc-cCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 009642 193 ADFCFKTFGDRVKQWVTMAEPNSISIGGYA-IGV-YAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKY 270 (530)
Q Consensus 193 a~~~~~~~~d~V~~W~t~NEp~~~~~~~y~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~ 270 (530)
|+.|+++|||+|++|+|||||++++..||. .|. +|||... ....++++||+++|||+||+++|+..
T Consensus 161 a~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~------------~~~~~~~~hn~llAHa~A~~~~~~~~ 228 (474)
T PRK09852 161 ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ------------DQVKYQAAHHELVASALATKIAHEVN 228 (474)
T ss_pred HHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc------------hHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999996 665 5887422 14579999999999999999999875
Q ss_pred cCCCCccEEEEeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCC--CCCCChhHHhhhcCCcc
Q 009642 271 QGHQKGEIGITIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSR--LPNFSKTESEMLKGSYD 348 (530)
Q Consensus 271 ~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~--lp~ft~ed~~~ikg~~D 348 (530)
+ +++||++++..+++|.+++++|++||++.+ +.++||+||+++|+||+.|++.++++ +|.|+++|+++|++++|
T Consensus 229 ~---~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~D 304 (474)
T PRK09852 229 P---QNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVD 304 (474)
T ss_pred C---CCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCC
Confidence 4 689999999999999999999999998877 55889999999999999999999864 79999999999999999
Q ss_pred EEEEecCCCceeccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEEEEc
Q 009642 349 FLGINYYAPMYAEDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIYITE 428 (530)
Q Consensus 349 FiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~ITE 428 (530)
|||||||++.+|+........ . ....+. ... .|..+.+++|| +|+|+||+++|+++++||++| |||||
T Consensus 305 FlGiNyYt~~~v~~~~~~~~~----~--~~~~~~--~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItE 372 (474)
T PRK09852 305 FVSFSYYASRCASAEMNANNS----S--AANVVK--SLR--NPYLQVSDWGW-GIDPLGLRITMNMMYDRYQKP-LFLVE 372 (474)
T ss_pred EEEEccccCeecccCCCCCCC----C--cCCcee--ccc--CCCcccCCCCC-eeChHHHHHHHHHHHHhcCCC-EEEeC
Confidence 999999999999753210000 0 000000 011 14445677999 899999999999999999986 99999
Q ss_pred CCCCCCcccccccccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCC-CccceeEEEEeCCC----Ccc
Q 009642 429 NGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAG-FTVGFGMVYVDHKD----NLQ 503 (530)
Q Consensus 429 NG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~----~~~ 503 (530)
||++..++.+.+++++|.+||+||++||++|++||++||||+|||+|||||||||.+| |++|||||+||++| +++
T Consensus 373 NG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~ 452 (474)
T PRK09852 373 NGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLT 452 (474)
T ss_pred CCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccc
Confidence 9999887766788999999999999999999999999999999999999999999999 99999999999996 379
Q ss_pred ccccchHHHHHHhhcCCCCC
Q 009642 504 RYPKDSFFWYKSFLAPPKSP 523 (530)
Q Consensus 504 R~pK~S~~~y~~ii~~~~~~ 523 (530)
|+||+|++||+++|++|+.|
T Consensus 453 R~pK~S~~wy~~ii~~ng~~ 472 (474)
T PRK09852 453 RTRKKSFWWYKKVIASNGED 472 (474)
T ss_pred eecccHHHHHHHHHHhCCcc
Confidence 99999999999999999875
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=3.2e-122 Score=983.03 Aligned_cols=427 Identities=43% Similarity=0.824 Sum_probs=393.0
Q ss_pred CCCCCeeeeeeccccccCCCCCCCCCCcccccccccCCCcccCCCCCccccchhhchHHHHHHHHHcCCCeEEecccCCc
Q 009642 48 FPPGFIFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKIHDGSNANVAIDFYHRYKEDIKLMKETGLDSFRFSISWPR 127 (530)
Q Consensus 48 fP~~FlwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~r~~eDi~l~k~lG~~~~R~si~W~r 127 (530)
||++|+||+|||||||||+++++|||+|+||.+.+ .|+++.++.++++||||||||+|||+|||+||+++|||||+|+|
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~-~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsr 79 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSH-TPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPR 79 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheecc-CCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhh
Confidence 89999999999999999999999999999999988 57877677788999999999999999999999999999999999
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHhcCcccEE
Q 009642 128 LLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFGDRVKQW 207 (530)
Q Consensus 128 i~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~W 207 (530)
|+|++. |.+|+++++||+++|++|+++||+|||||+|||+|+||+++ |||.|+++++.|++||+.|+++|||+|++|
T Consensus 80 i~p~g~--~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w 156 (427)
T TIGR03356 80 IFPEGT--GPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHW 156 (427)
T ss_pred cccCCC--CCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEE
Confidence 999975 88999999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred EeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCccEEEEeeCccc
Q 009642 208 VTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKYQGHQKGEIGITIVTQWF 287 (530)
Q Consensus 208 ~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~~~~~~~ 287 (530)
+|||||++++..||..|.+||+.++. ...++++||+++|||+||+++|++.+ +++||++++..++
T Consensus 157 ~t~NEp~~~~~~~y~~G~~~P~~~~~------------~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~ 221 (427)
T TIGR03356 157 ITLNEPWCSAFLGYGLGVHAPGLRDL------------RAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPV 221 (427)
T ss_pred EEecCcceecccchhhccCCCCCccH------------HHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCee
Confidence 99999999999999999999985431 34689999999999999999999754 7999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCCCCCCChhHHhhhcCCccEEEEecCCCceeccCCCCC
Q 009642 288 IPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSRLPNFSKTESEMLKGSYDFLGINYYAPMYAEDSSSST 367 (530)
Q Consensus 288 ~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYt~~~v~~~~~~~ 367 (530)
+|.+++++|+.||++.+++.++||+||++.|+||..|++.++. +|.||++|++.+++++||||||||++.+|+......
T Consensus 222 ~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~ 300 (427)
T TIGR03356 222 YPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG 300 (427)
T ss_pred eeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC
Confidence 9999999999999999999999999999999999999999974 699999999999999999999999999997532110
Q ss_pred CCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEEEEcCCCCCCcccccccccCChH
Q 009642 368 SNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIYITENGVADAKDVEQAQARKDDL 447 (530)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~~~~~~~g~i~D~~ 447 (530)
... . .. .+..+.++++| +|+|+||+++|+++++||++|||||||||++..++.+ +++++|++
T Consensus 301 -----~~~--~-------~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~-~g~~~D~~ 362 (427)
T TIGR03356 301 -----AGF--V-------EV--PEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVT-DGEVHDPE 362 (427)
T ss_pred -----CCc--c-------cc--CCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCc-CCCcCCHH
Confidence 000 0 00 12224567899 9999999999999999999988999999999887655 78899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCCCccceeEEEEeCCCCccccccchHHHH
Q 009642 448 RIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAGFTVGFGMVYVDHKDNLQRYPKDSFFWY 513 (530)
Q Consensus 448 Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y 513 (530)
||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++| ++|+||+|++||
T Consensus 363 Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~-~~R~~K~S~~wy 427 (427)
T TIGR03356 363 RIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYET-QKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEECCCC-CcccccceeeeC
Confidence 99999999999999999999999999999999999999999999999999998 999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.58 E-value=4.4e-13 Score=134.45 Aligned_cols=251 Identities=15% Similarity=0.157 Sum_probs=159.3
Q ss_pred ccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHh
Q 009642 123 ISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKP--FVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTF 200 (530)
Q Consensus 123 i~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p--~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~ 200 (530)
+.|++|+|++ |.+|+ +..+++++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||
T Consensus 1 ~kW~~~ep~~---G~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry 70 (254)
T smart00633 1 MKWDSTEPSR---GQFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRY 70 (254)
T ss_pred CCcccccCCC---CccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHh
Confidence 3699999998 99999 45668999999999995 4467788999998742 2 5577899999999999999
Q ss_pred cCcccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCccEEE
Q 009642 201 GDRVKQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKYQGHQKGEIGI 280 (530)
Q Consensus 201 ~d~V~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi 280 (530)
+++|..|-++|||...... |... ...+++.-.-. -..|+++.|+..| +.++-+
T Consensus 71 ~g~i~~wdV~NE~~~~~~~---------~~~~-------------~~w~~~~G~~~--i~~af~~ar~~~P---~a~l~~ 123 (254)
T smart00633 71 KGKIYAWDVVNEALHDNGS---------GLRR-------------SVWYQILGEDY--IEKAFRYAREADP---DAKLFY 123 (254)
T ss_pred CCcceEEEEeeecccCCCc---------cccc-------------chHHHhcChHH--HHHHHHHHHHhCC---CCEEEE
Confidence 9999999999999853111 1110 01111110011 2246677777655 344433
Q ss_pred EeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCCCCCCChhHHhhhcCCccEEEEecCCCcee
Q 009642 281 TIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSRLPNFSKTESEMLKGSYDFLGINYYAPMYA 360 (530)
Q Consensus 281 ~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYt~~~v 360 (530)
. ......+ . .. ......+ .+.| ..-..++|-||++....
T Consensus 124 N-dy~~~~~---~-~k---~~~~~~~------------------v~~l------------~~~g~~iDgiGlQ~H~~--- 162 (254)
T smart00633 124 N-DYNTEEP---N-AK---RQAIYEL------------------VKKL------------KAKGVPIDGIGLQSHLS--- 162 (254)
T ss_pred e-ccCCcCc---c-HH---HHHHHHH------------------HHHH------------HHCCCccceeeeeeeec---
Confidence 2 1111111 0 00 0111111 1111 11123578899853210
Q ss_pred ccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEEEEcCCCCCCcccccc
Q 009642 361 EDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIYITENGVADAKDVEQA 440 (530)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~~~~~~~ 440 (530)
. . ...|..|...|+.+.+. +. ||+|||.++....
T Consensus 163 -~-~-------------------------------------~~~~~~~~~~l~~~~~~-g~-pi~iTE~dv~~~~----- 196 (254)
T smart00633 163 -L-G-------------------------------------SPNIAEIRAALDRFASL-GL-EIQITELDISGYP----- 196 (254)
T ss_pred -C-C-------------------------------------CCCHHHHHHHHHHHHHc-CC-ceEEEEeecCCCC-----
Confidence 0 0 01245789999998764 66 5999999998643
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCCCccceeEEEEeCCCCccccccchHHH
Q 009642 441 QARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAGFTVGFGMVYVDHKDNLQRYPKDSFFW 512 (530)
Q Consensus 441 g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~ 512 (530)
....+.+++++++..+.+- . .|.|.++|.+.|..+|..+ .+.||+. ..-.|||++++
T Consensus 197 ---~~~~qA~~~~~~l~~~~~~---p-~v~gi~~Wg~~d~~~W~~~--~~~~L~d------~~~~~kpa~~~ 253 (254)
T smart00633 197 ---NPQAQAADYEEVFKACLAH---P-AVTGVTVWGVTDKYSWLDG--GAPLLFD------ANYQPKPAYWA 253 (254)
T ss_pred ---cHHHHHHHHHHHHHHHHcC---C-CeeEEEEeCCccCCcccCC--CCceeEC------CCCCCChhhhc
Confidence 1156667777777666542 2 7899999999999999875 5678873 23457887754
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.37 E-value=5.7e-11 Score=119.35 Aligned_cols=109 Identities=19% Similarity=0.292 Sum_probs=91.4
Q ss_pred chHHHHHHHHHcCCCeEEecccCCccc-cCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCC
Q 009642 103 RYKEDIKLMKETGLDSFRFSISWPRLL-PKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFL 181 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si~W~ri~-P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~ 181 (530)
..++|++.||++|+|++|+-|.|..++ |.+. +.++...++.++++|+.+.++||.+||+|++. |.|.... ++..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~--~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~ 96 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPG--YNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYG 96 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTT--TSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCC--ccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccc
Confidence 578999999999999999999998888 5663 56899999999999999999999999999886 7774332 2333
Q ss_pred -ChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCccc
Q 009642 182 -SSEIVKDFGDYADFCFKTFGD--RVKQWVTMAEPNSI 216 (530)
Q Consensus 182 -~~~~~~~f~~ya~~~~~~~~d--~V~~W~t~NEp~~~ 216 (530)
.....+.|.++.+.++++|++ .|..|.++|||...
T Consensus 97 ~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 97 NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 345678899999999999954 68899999999864
No 16
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.34 E-value=2e-12 Score=136.76 Aligned_cols=109 Identities=26% Similarity=0.429 Sum_probs=88.8
Q ss_pred hchHHHHHHHHHcCCCeEEe-cccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhh----
Q 009642 102 HRYKEDIKLMKETGLDSFRF-SISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDE---- 176 (530)
Q Consensus 102 ~r~~eDi~l~k~lG~~~~R~-si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~---- 176 (530)
.++++|+++||++|+|++|+ .++|++|||++ |++|+ .++|++|+.+.++||++++.+.+...|.||.++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e---G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~ 83 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE---GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEI 83 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT---TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC---Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccc
Confidence 56999999999999999997 56999999999 99999 668899999999999999999999999999864
Q ss_pred -----------hCCC-----CChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCccc
Q 009642 177 -----------YGGF-----LSSEIVKDFGDYADFCFKTFGD--RVKQWVTMAEPNSI 216 (530)
Q Consensus 177 -----------~ggw-----~~~~~~~~f~~ya~~~~~~~~d--~V~~W~t~NEp~~~ 216 (530)
.|+. .+|.+.+.+.++++.++++|++ .|..|.+.|||...
T Consensus 84 ~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 84 LPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp C-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 1222 2467788899999999999998 48999999999864
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.18 E-value=7.4e-09 Score=107.16 Aligned_cols=249 Identities=18% Similarity=0.277 Sum_probs=141.6
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCC---CchhHHhhhCCCC
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWD---LPQVLEDEYGGFL 181 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~---~P~wl~~~~ggw~ 181 (530)
++=+++||+.|+|++|+-+ | +-|.. .|.-|. +.-.++..+.+++||+.+|++|--| =|.--. ...+|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~--~g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~-~P~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD--GGYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN-KPAAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT--TTTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc--cccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-CCccCC
Confidence 4567999999999999977 3 33443 155554 7788999999999999999987523 333211 136898
Q ss_pred C---hHHHHHHHHHHHHHHHHhcC---cccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 009642 182 S---SEIVKDFGDYADFCFKTFGD---RVKQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNL 255 (530)
Q Consensus 182 ~---~~~~~~f~~ya~~~~~~~~d---~V~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~ 255 (530)
+ .+..+.-.+|.+.+.+.+++ .++++++-||.+.-. .||-|... -+.-.-.+
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gm-------lwp~g~~~---------------~~~~~a~l 155 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGM-------LWPDGKPS---------------NWDNLAKL 155 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGES-------TBTTTCTT----------------HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccc-------cCcCCCcc---------------CHHHHHHH
Confidence 8 57778888999999998855 589999999987321 24555421 14444455
Q ss_pred HHHHHHHHHHHHHhccCCCCccEEEEeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCCCCCC
Q 009642 256 LLSHATAVKLYKEKYQGHQKGEIGITIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSRLPNF 335 (530)
Q Consensus 256 l~AHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~lp~f 335 (530)
+.|=.+| +|+..+ ..+|.+-+.. | .|... ..||.|-+..
T Consensus 156 l~ag~~A---Vr~~~p---~~kV~lH~~~----~-----~~~~~--------~~~~f~~l~~------------------ 194 (332)
T PF07745_consen 156 LNAGIKA---VREVDP---NIKVMLHLAN----G-----GDNDL--------YRWFFDNLKA------------------ 194 (332)
T ss_dssp HHHHHHH---HHTHSS---TSEEEEEES-----T-----TSHHH--------HHHHHHHHHH------------------
T ss_pred HHHHHHH---HHhcCC---CCcEEEEECC----C-----CchHH--------HHHHHHHHHh------------------
Confidence 5555555 455544 4565444332 1 12111 1223333221
Q ss_pred ChhHHhhhcCCccEEEEecCCCceeccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHH
Q 009642 336 SKTESEMLKGSYDFLGINYYAPMYAEDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYI 415 (530)
Q Consensus 336 t~ed~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i 415 (530)
-....|.||++||.- | .-....|+..|+.+
T Consensus 195 -------~g~d~DviGlSyYP~------------------------------------------w-~~~l~~l~~~l~~l 224 (332)
T PF07745_consen 195 -------AGVDFDVIGLSYYPF------------------------------------------W-HGTLEDLKNNLNDL 224 (332)
T ss_dssp -------TTGG-SEEEEEE-ST------------------------------------------T-ST-HHHHHHHHHHH
T ss_pred -------cCCCcceEEEecCCC------------------------------------------C-cchHHHHHHHHHHH
Confidence 112459999999930 1 11446899999999
Q ss_pred HHhcCCCcEEEEcCCCCCCcc-cc-ccccc-----------CChHHHHHHHHHHHHHHHHHHc--CCceEEEEEeccccc
Q 009642 416 KSKYNNPAIYITENGVADAKD-VE-QAQAR-----------KDDLRIKCYQEHLWYLLEAIKE--GVHVKGYYAWSFLDN 480 (530)
Q Consensus 416 ~~rY~~ppI~ITENG~~~~~~-~~-~~g~i-----------~D~~Ri~yl~~hL~~v~~Ai~d--Gv~V~GY~~WSl~Dn 480 (530)
.+||++ ||+|+|.|++...+ .+ ....+ .-.-...| |..+.+++.+ +-...|.|+|-..-.
T Consensus 225 ~~ry~K-~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~----l~~l~~~v~~~p~~~g~GvfYWeP~w~ 299 (332)
T PF07745_consen 225 ASRYGK-PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADF----LRDLINAVKNVPNGGGLGVFYWEPAWI 299 (332)
T ss_dssp HHHHT--EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHH----HHHHHHHHHTS--TTEEEEEEE-TT-G
T ss_pred HHHhCC-eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHH----HHHHHHHHHHhccCCeEEEEeeccccc
Confidence 999987 59999999887621 00 00000 01123344 4555555653 678999999965544
No 18
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.01 E-value=6.2e-08 Score=108.90 Aligned_cols=264 Identities=19% Similarity=0.146 Sum_probs=151.9
Q ss_pred hchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHh------
Q 009642 102 HRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLED------ 175 (530)
Q Consensus 102 ~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~------ 175 (530)
..+..|+++||++|+|++|+|- .|.. + ++++.|=+.||-++.=+.-+....|+..
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~-------~-------~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS-------E-------EMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC-------H-------HHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 4578999999999999999951 3332 2 6788999999987764433222222210
Q ss_pred -hhCCCC----ChHHHHHHHHHHHHHHHHhcCc--ccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChH
Q 009642 176 -EYGGFL----SSEIVKDFGDYADFCFKTFGDR--VKQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEP 248 (530)
Q Consensus 176 -~~ggw~----~~~~~~~f~~ya~~~~~~~~d~--V~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~ 248 (530)
....|. +++..+.+.+-++.+++++.+. |..|.+.||+..- .++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~----------~~~------------------- 424 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR----------EQG------------------- 424 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc----------chh-------------------
Confidence 001222 3567788999999999999885 8899999997310 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCccEEEEeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhh
Q 009642 249 YIVSHNLLLSHATAVKLYKEKYQGHQKGEIGITIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLV 328 (530)
Q Consensus 249 ~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l 328 (530)
.... +...++.+|+..+. -.|..+.+... .+. .
T Consensus 425 ~~~~------~~~l~~~~k~~Dpt---R~vt~~~~~~~-~~~--------------------------~----------- 457 (604)
T PRK10150 425 AREY------FAPLAELTRKLDPT---RPVTCVNVMFA-TPD--------------------------T----------- 457 (604)
T ss_pred HHHH------HHHHHHHHHhhCCC---CceEEEecccC-Ccc--------------------------c-----------
Confidence 1111 12334556766442 22322221100 000 0
Q ss_pred cCCCCCCChhHHhhhcCCccEEEEecCCCceeccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHH
Q 009642 329 GSRLPNFSKTESEMLKGSYDFLGINYYAPMYAEDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGI 408 (530)
Q Consensus 329 ~~~lp~ft~ed~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL 408 (530)
..+...+|++|+|.|..-+.... .. .-.-..+
T Consensus 458 ------------~~~~~~~Dv~~~N~Y~~wy~~~~----------~~--------------------------~~~~~~~ 489 (604)
T PRK10150 458 ------------DTVSDLVDVLCLNRYYGWYVDSG----------DL--------------------------ETAEKVL 489 (604)
T ss_pred ------------ccccCcccEEEEcccceecCCCC----------CH--------------------------HHHHHHH
Confidence 00112459999998854321100 00 0000124
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCCcc--cccccccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCC
Q 009642 409 KDFMLYIKSKYNNPAIYITENGVADAKD--VEQAQARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAG 486 (530)
Q Consensus 409 ~~~L~~i~~rY~~ppI~ITENG~~~~~~--~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~G 486 (530)
...+....+.|++ ||+|||.|.+.... ...+..-..+++..|+.+|+..+. +-=-|.|-|.|.+.|- .+..|
T Consensus 490 ~~~~~~~~~~~~k-P~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~----~~p~~~G~~iW~~~D~-~~~~g 563 (604)
T PRK10150 490 EKELLAWQEKLHK-PIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD----RVPAVVGEQVWNFADF-ATSQG 563 (604)
T ss_pred HHHHHHHHHhcCC-CEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEEEeeecc-CCCCC
Confidence 4555555666755 59999999644211 000112234566777777776443 3347999999999992 22222
Q ss_pred C----ccceeEEEEeCCCCccccccchHHHHHHhhcCC
Q 009642 487 F----TVGFGMVYVDHKDNLQRYPKDSFFWYKSFLAPP 520 (530)
Q Consensus 487 y----~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~ 520 (530)
. ....||+. ..|+||+++++||++.+..
T Consensus 564 ~~~~~g~~~Gl~~------~dr~~k~~~~~~k~~~~~~ 595 (604)
T PRK10150 564 ILRVGGNKKGIFT------RDRQPKSAAFLLKKRWTGI 595 (604)
T ss_pred CcccCCCcceeEc------CCCCChHHHHHHHHHhhcC
Confidence 1 13567763 5688999999999998543
No 19
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.99 E-value=4.9e-08 Score=101.31 Aligned_cols=274 Identities=17% Similarity=0.167 Sum_probs=159.9
Q ss_pred CCeEEe--cccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE--EecCCCCchhHHhhhCCCCChH---HHHH
Q 009642 116 LDSFRF--SISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFV--TLFHWDLPQVLEDEYGGFLSSE---IVKD 188 (530)
Q Consensus 116 ~~~~R~--si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~v--tL~H~~~P~wl~~~~ggw~~~~---~~~~ 188 (530)
+|..-. .+-|..++|.. |.+|++ -.+++++-++++||++-- .+.|--.|.|+... .-+...+ ..+.
T Consensus 35 Fn~~t~eN~~Kw~~~e~~~---g~~~~~---~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~ 107 (320)
T PF00331_consen 35 FNSVTPENEMKWGSIEPEP---GRFNFE---SADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRAR 107 (320)
T ss_dssp -SEEEESSTTSHHHHESBT---TBEE-H---HHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHH
T ss_pred CCeeeeccccchhhhcCCC---CccCcc---chhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHH
Confidence 444444 36899999998 999994 467999999999999873 45577899999763 1223233 7889
Q ss_pred HHHHHHHHHHHhcC--cccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 009642 189 FGDYADFCFKTFGD--RVKQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLY 266 (530)
Q Consensus 189 f~~ya~~~~~~~~d--~V~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~ 266 (530)
..+|.+.+++||++ +|..|=+.|||..... .+-|..+ ...++++=. ---..|++.-
T Consensus 108 l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r~-------------~~~~~~lG~--~yi~~aF~~A 165 (320)
T PF00331_consen 108 LENHIKTVVTRYKDKGRIYAWDVVNEAIDDDG-------NPGGLRD-------------SPWYDALGP--DYIADAFRAA 165 (320)
T ss_dssp HHHHHHHHHHHTTTTTTESEEEEEES-B-TTS-------SSSSBCT-------------SHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHhHhccccceEEEEEeeecccCCC-------ccccccC-------------ChhhhcccH--hHHHHHHHHH
Confidence 99999999999995 8999999999964321 0111111 122332210 0123445555
Q ss_pred HHhccCCCCccEEEEeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCCCCCCChhHHhhhcCC
Q 009642 267 KEKYQGHQKGEIGITIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSRLPNFSKTESEMLKGS 346 (530)
Q Consensus 267 r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~ 346 (530)
|+..| +.+.=+ .......+ +. + ..+. .+.+.| ..-.-+
T Consensus 166 ~~~~P---~a~L~~-NDy~~~~~------~k----~-~~~~---------------~lv~~l------------~~~gvp 203 (320)
T PF00331_consen 166 READP---NAKLFY-NDYNIESP------AK----R-DAYL---------------NLVKDL------------KARGVP 203 (320)
T ss_dssp HHHHT---TSEEEE-EESSTTST------HH----H-HHHH---------------HHHHHH------------HHTTHC
T ss_pred HHhCC---CcEEEe-ccccccch------HH----H-HHHH---------------HHHHHH------------HhCCCc
Confidence 66655 333222 12211111 11 1 0010 011111 100125
Q ss_pred ccEEEEecCCCceeccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEEE
Q 009642 347 YDFLGINYYAPMYAEDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIYI 426 (530)
Q Consensus 347 ~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~I 426 (530)
+|=||++-.-. . +. . |..+...|+++.+ .+. ||.|
T Consensus 204 IdgIG~Q~H~~----~------------------------------------~~-~--~~~i~~~l~~~~~-~Gl-~i~I 238 (320)
T PF00331_consen 204 IDGIGLQSHFD----A------------------------------------GY-P--PEQIWNALDRFAS-LGL-PIHI 238 (320)
T ss_dssp S-EEEEEEEEE----T------------------------------------TS-S--HHHHHHHHHHHHT-TTS-EEEE
T ss_pred cceechhhccC----C------------------------------------CC-C--HHHHHHHHHHHHH-cCC-ceEE
Confidence 78888864411 0 00 1 7899999999854 575 5999
Q ss_pred EcCCCCCCcccccccccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccccccCCCccce-eEEEEeCCCCcccc
Q 009642 427 TENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWDAGFTVGF-GMVYVDHKDNLQRY 505 (530)
Q Consensus 427 TENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rf-GL~~VD~~~~~~R~ 505 (530)
||..+...+.... .-.+..+.+++++++..+.+.-.+ .|.|.+.|.+.|+.+|.....+.+ +|+. ..-.
T Consensus 239 TElDv~~~~~~~~--~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd------~~~~ 308 (320)
T PF00331_consen 239 TELDVRDDDNPPD--AEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLFD------EDYQ 308 (320)
T ss_dssp EEEEEESSSTTSC--HHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB-------TTSB
T ss_pred EeeeecCCCCCcc--hHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeEC------CCcC
Confidence 9998877542100 112456777777777666654222 799999999999999987633333 4552 4456
Q ss_pred ccchHHHHHH
Q 009642 506 PKDSFFWYKS 515 (530)
Q Consensus 506 pK~S~~~y~~ 515 (530)
|||+++.+.+
T Consensus 309 ~Kpa~~~~~~ 318 (320)
T PF00331_consen 309 PKPAYDAIVD 318 (320)
T ss_dssp B-HHHHHHHH
T ss_pred CCHHHHHHHh
Confidence 8999887765
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.94 E-value=4.1e-08 Score=107.51 Aligned_cols=292 Identities=23% Similarity=0.381 Sum_probs=140.9
Q ss_pred chHHHHHHHH-HcCCCeEEec--c--cCCcccc-CCCCCCC--CChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHH
Q 009642 103 RYKEDIKLMK-ETGLDSFRFS--I--SWPRLLP-KGKISGG--VNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLE 174 (530)
Q Consensus 103 r~~eDi~l~k-~lG~~~~R~s--i--~W~ri~P-~~~~~g~--~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~ 174 (530)
.+++.++.++ ++|++.+||- + +..-..+ ++. |. +|+ ...|+++|.|+++||+|+|.|.. +|.++.
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~--~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~ 112 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDED--GIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALA 112 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETT--EEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGB
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccC--CCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhc
Confidence 3677777776 9999999985 2 2222222 221 32 798 77889999999999999999977 676664
Q ss_pred hh------hCCCCC-hHHHHHHHHHHHHHHHHhcC-----ccc--EEEeccCCcccccccccccccCCCCCCCCCCCCCC
Q 009642 175 DE------YGGFLS-SEIVKDFGDYADFCFKTFGD-----RVK--QWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCA 240 (530)
Q Consensus 175 ~~------~ggw~~-~~~~~~f~~ya~~~~~~~~d-----~V~--~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~ 240 (530)
.. +.|+.+ |+..+.+.++++.+++|+-+ .|. +|.+||||++... |..|.
T Consensus 113 ~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~---------- 175 (486)
T PF01229_consen 113 SGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT---------- 175 (486)
T ss_dssp SS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-----------
T ss_pred CCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC----------
Confidence 31 123333 46677787777666665533 466 5689999997421 11111
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCccEEEEeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCC
Q 009642 241 AGDSATEPYIVSHNLLLSHATAVKLYKEKYQGHQKGEIGITIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEY 320 (530)
Q Consensus 241 ~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~y 320 (530)
.+.|- .+ ...+++++|+..| ..+||-.-.. ... + .... .|
T Consensus 176 -----~~ey~---~l---y~~~~~~iK~~~p---~~~vGGp~~~-------~~~-~-~~~~---~~-------------- 215 (486)
T PF01229_consen 176 -----PEEYF---EL---YDATARAIKAVDP---ELKVGGPAFA-------WAY-D-EWCE---DF-------------- 215 (486)
T ss_dssp -----HHHHH---HH---HHHHHHHHHHH-T---TSEEEEEEEE-------TT--T-HHHH---HH--------------
T ss_pred -----HHHHH---HH---HHHHHHHHHHhCC---CCcccCcccc-------ccH-H-HHHH---HH--------------
Confidence 11122 12 2335666777765 5788854100 000 0 0001 11
Q ss_pred chHHHhhhcCCCCCCChhHHhhhcCCccEEEEecCCCceeccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCC
Q 009642 321 PEVMTTLVGSRLPNFSKTESEMLKGSYDFLGINYYAPMYAEDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPW 400 (530)
Q Consensus 321 P~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w 400 (530)
+++++.+ ...+|||.+..|.......... .. .. .+ .. .
T Consensus 216 ----l~~~~~~------------~~~~DfiS~H~y~~~~~~~~~~--------~~-----~~--------~~---~~--~ 253 (486)
T PF01229_consen 216 ----LEFCKGN------------NCPLDFISFHSYGTDSAEDINE--------NM-----YE--------RI---ED--S 253 (486)
T ss_dssp ----HHHHHHC------------T---SEEEEEEE-BESESE-SS---------E-----EE--------EB-------H
T ss_pred ----HHHHhcC------------CCCCCEEEEEecccccccccch--------hH-----Hh--------hh---hh--H
Confidence 1111111 1356999999997532211000 00 00 00 00 0
Q ss_pred cccChHHHHHHHHHHHHh-cCCCcEEEEcCCCCCCcccccccccCCh-HHHHHHHHHHHHHHHHHHcCCceEEEEEeccc
Q 009642 401 IFLYPKGIKDFMLYIKSK-YNNPAIYITENGVADAKDVEQAQARKDD-LRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFL 478 (530)
Q Consensus 401 ~~i~P~GL~~~L~~i~~r-Y~~ppI~ITENG~~~~~~~~~~g~i~D~-~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~ 478 (530)
..+. ..+..+.+.+.+. +++.|+++||-...... ...++|+ ++..|+... ++.. +|..+-++.+|++.
T Consensus 254 ~~~~-~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~----~~~~~dt~~~aA~i~k~---lL~~--~~~~l~~~sywt~s 323 (486)
T PF01229_consen 254 RRLF-PELKETRPIINDEADPNLPLYITEWNASISP----RNPQHDTCFKAAYIAKN---LLSN--DGAFLDSFSYWTFS 323 (486)
T ss_dssp HHHH-HHHHHHHHHHHTSSSTT--EEEEEEES-SST----T-GGGGSHHHHHHHHH----HHHH--GGGT-SEEEES-SB
T ss_pred HHHH-HHHHHHHHHHhhccCCCCceeecccccccCC----CcchhccccchhhHHHH---HHHh--hhhhhhhhhccchh
Confidence 0122 2344444444443 45557999996554432 2344453 444444332 2222 46667778899999
Q ss_pred ccccccCC----CccceeEEEEeCCCCccccccchHHHHHHh
Q 009642 479 DNFEWDAG----FTVGFGMVYVDHKDNLQRYPKDSFFWYKSF 516 (530)
Q Consensus 479 Dn~EW~~G----y~~rfGL~~VD~~~~~~R~pK~S~~~y~~i 516 (530)
|.||=..- +---|||+.. ..++|+|++.|.=+
T Consensus 324 D~Fee~~~~~~pf~ggfGLlt~------~gI~KPa~~A~~~L 359 (486)
T PF01229_consen 324 DRFEENGTPRKPFHGGFGLLTK------LGIPKPAYYAFQLL 359 (486)
T ss_dssp S---TTSS-SSSSSS-S-SEEC------CCEE-HHHHHHHHH
T ss_pred hhhhccCCCCCceecchhhhhc------cCCCchHHHHHHHH
Confidence 99983221 4456899974 36899998887643
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=2.8e-07 Score=93.24 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=70.4
Q ss_pred ccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE--EecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHh
Q 009642 123 ISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFV--TLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTF 200 (530)
Q Consensus 123 i~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~v--tL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~ 200 (530)
+-|.-|+|+. |.+|+++- |.+.+-++++||.--- -+.|--.|.||.. --+..+...+...++...|++||
T Consensus 67 mKwe~i~p~~---G~f~Fe~A---D~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 67 MKWEAIEPER---GRFNFEAA---DAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccCCC---CccCccch---HHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 4688999987 99999664 5888999999997543 2456678999854 23677899999999999999999
Q ss_pred cCcccEEEeccCCcc
Q 009642 201 GDRVKQWVTMAEPNS 215 (530)
Q Consensus 201 ~d~V~~W~t~NEp~~ 215 (530)
.+.|..|=+.|||--
T Consensus 139 kg~~~sWDVVNE~vd 153 (345)
T COG3693 139 KGSVASWDVVNEAVD 153 (345)
T ss_pred cCceeEEEecccccC
Confidence 999999999999853
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=1.4e-08 Score=113.06 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=95.5
Q ss_pred chHHHHHHHHHcCCCeEEecc-cCCccccCCCCCCCCChHHHHHHHHH-HHHHHHCCCeEEEEe-cCCCCchhHHhh---
Q 009642 103 RYKEDIKLMKETGLDSFRFSI-SWPRLLPKGKISGGVNPLGVQFYNNL-IDELIANGIKPFVTL-FHWDLPQVLEDE--- 176 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si-~W~ri~P~~~~~g~~n~~gl~~y~~~-i~~l~~~GI~p~vtL-~H~~~P~wl~~~--- 176 (530)
-|++|+++||++|+|++|.++ +|++++|+. |++|+. +.|.. |+.+.+.||..|+.. .....|.|+.++
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e---G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pe 104 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE---GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPE 104 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc---cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChh
Confidence 478999999999999999966 999999999 999995 67777 999999999999998 889999999885
Q ss_pred ------------hCCCCChHHH-HHHHHHHHH----HHHH-hcC--cccEEEeccCCcc-cccccccccccC
Q 009642 177 ------------YGGFLSSEIV-KDFGDYADF----CFKT-FGD--RVKQWVTMAEPNS-ISIGGYAIGVYA 227 (530)
Q Consensus 177 ------------~ggw~~~~~~-~~f~~ya~~----~~~~-~~d--~V~~W~t~NEp~~-~~~~~y~~G~~~ 227 (530)
.|+|.+-... ..|.+|++. +.+| |++ .|..|++-||... .+...|+...|+
T Consensus 105 iL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 105 ILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred heEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 5778554333 236666665 7788 776 5899999999887 444445555544
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.10 E-value=0.00015 Score=74.29 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=62.8
Q ss_pred hhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCC
Q 009642 100 FYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGG 179 (530)
Q Consensus 100 ~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~gg 179 (530)
....++.|+++||+||+|++|++- .|. ++ ++++.|-+.||-++.-+.....-.|-. .|-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~-------~~-------~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~ 92 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPP-------SP-------RFYDLCDELGILVWQEIPLEGHGSWQD--FGN 92 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S---------SH-------HHHHHHHHHT-EEEEE-S-BSCTSSSS--TSC
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccC-------cH-------HHHHHHhhcCCEEEEeccccccCcccc--CCc
Confidence 357889999999999999999942 222 22 677889999998887553322111210 110
Q ss_pred ----CCChHHHHHHHHHHHHHHHHhcCc--ccEEEeccCC
Q 009642 180 ----FLSSEIVKDFGDYADFCFKTFGDR--VKQWVTMAEP 213 (530)
Q Consensus 180 ----w~~~~~~~~f~~ya~~~~~~~~d~--V~~W~t~NEp 213 (530)
-.+++..+.+.+-++.+++++.+. |-.|.+.||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 93 CNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 135788888989999999999874 9999999998
No 24
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0035 Score=63.19 Aligned_cols=319 Identities=17% Similarity=0.293 Sum_probs=175.1
Q ss_pred CCCCCCCeeeeeecc-ccccCCCCCCCCCCcccccccccCCCcccCCCCCccccchhhchHHHHHHHHHcCCCeEEeccc
Q 009642 46 SNFPPGFIFGAGTSA-YAAEGNVNIDGKSPSIWDTFANNHPEKIHDGSNANVAIDFYHRYKEDIKLMKETGLDSFRFSIS 124 (530)
Q Consensus 46 ~~fP~~FlwG~atsa-~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~r~~eDi~l~k~lG~~~~R~si~ 124 (530)
...|+||.-|+-.|. +|+|-. .+++.+ .++- -++=++.+|+.|+|.+|+-|
T Consensus 33 ~~~~~dFikGaDis~l~~lE~~------------------Gvkf~d-~ng~--------~qD~~~iLK~~GvNyvRlRv- 84 (403)
T COG3867 33 ENSPNDFIKGADISSLIELENS------------------GVKFFD-TNGV--------RQDALQILKNHGVNYVRLRV- 84 (403)
T ss_pred cCChHHhhccccHHHHHHHHHc------------------CceEEc-cCCh--------HHHHHHHHHHcCcCeEEEEE-
Confidence 358999998886554 455542 122221 1221 13446889999999999965
Q ss_pred CCccccCCC----CCCCCChHHHHHHHHHHHHHHHCCCeEEEEecC---CCCchhHHhhhCCCCCh---HHHHHHHHHHH
Q 009642 125 WPRLLPKGK----ISGGVNPLGVQFYNNLIDELIANGIKPFVTLFH---WDLPQVLEDEYGGFLSS---EIVKDFGDYAD 194 (530)
Q Consensus 125 W~ri~P~~~----~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H---~~~P~wl~~~~ggw~~~---~~~~~f~~ya~ 194 (530)
|-. |..+ ..|.-|. ++---.+-.+.+.+||++++..|- |.=|..- ++.-.|.+- +.-.+--+|.+
T Consensus 85 wnd--P~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk 159 (403)
T COG3867 85 WND--PYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTK 159 (403)
T ss_pred ecC--CccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHH
Confidence 211 2211 1122332 233456777888999999988753 5556542 234567763 33344455666
Q ss_pred HHHHHh---cCcccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 009642 195 FCFKTF---GDRVKQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHATAVKLYKEKYQ 271 (530)
Q Consensus 195 ~~~~~~---~d~V~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~ 271 (530)
.+...+ |-..++-++=||-+- |+ .||-|... -+.-+-.++.+ +++++|+..|
T Consensus 160 ~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~---------------~f~k~a~L~n~---g~~avrev~p 214 (403)
T COG3867 160 YVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR---------------NFDKMAALLNA---GIRAVREVSP 214 (403)
T ss_pred HHHHHHHHcCCCccceEeccccCC----ce---eccCCCCc---------------ChHHHHHHHHH---HhhhhhhcCC
Confidence 666666 446889999999762 11 25545321 13333334443 3455666544
Q ss_pred CCCCccEEEEeeCcccccCCCCHHHHHHHHHHHhhhcccccchhccCCCchHHHhhhcCCCCCCChhHHhhhcCCccEEE
Q 009642 272 GHQKGEIGITIVTQWFIPKTESPADQETASRMLDFLFGWFAHPITYGEYPEVMTTLVGSRLPNFSKTESEMLKGSYDFLG 351 (530)
Q Consensus 272 ~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldpi~~G~yP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiG 351 (530)
.-+ ++++.. .|..++ ..+|+.|-+.+- .-..|.||
T Consensus 215 ---~ik--v~lHla--~g~~n~-------------~y~~~fd~ltk~-------------------------nvdfDVig 249 (403)
T COG3867 215 ---TIK--VALHLA--EGENNS-------------LYRWIFDELTKR-------------------------NVDFDVIG 249 (403)
T ss_pred ---Cce--EEEEec--CCCCCc-------------hhhHHHHHHHHc-------------------------CCCceEEe
Confidence 233 444432 333321 112333322211 12458999
Q ss_pred EecCCCceeccCCCCCCCCCCccCCCCCcceecccCCCCCCCCCCCCCCcccChHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 009642 352 INYYAPMYAEDSSSSTSNSDTISYSTDSRVTLSTHKDGNPIGTPTTLPWIFLYPKGIKDFMLYIKSKYNNPAIYITENGV 431 (530)
Q Consensus 352 iNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~i~P~GL~~~L~~i~~rY~~ppI~ITENG~ 431 (530)
.+||.- +. | .=..|...|..|..||++. ++|.|.+-
T Consensus 250 ~SyYpy--Wh---------------------------g--------------tl~nL~~nl~dia~rY~K~-VmV~Etay 285 (403)
T COG3867 250 SSYYPY--WH---------------------------G--------------TLNNLTTNLNDIASRYHKD-VMVVETAY 285 (403)
T ss_pred eecccc--cc---------------------------C--------------cHHHHHhHHHHHHHHhcCe-EEEEEecc
Confidence 999931 10 0 1125788899999999874 99998877
Q ss_pred CCCcc--------ccc-------ccccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEeccccccc-ccCCCccceeEEE
Q 009642 432 ADAKD--------VEQ-------AQARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFE-WDAGFTVGFGMVY 495 (530)
Q Consensus 432 ~~~~~--------~~~-------~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~E-W~~Gy~~rfGL~~ 495 (530)
+..-+ .+. ..++ +-+..++++-|+.|..- -+.+=.|.|+|-.-=+-. -.+|+...||.-|
T Consensus 286 ~yTlEdgDg~~Nt~~~~~~t~~ypitV--QGQat~vrDvie~V~nv--p~~~GlGvFYWEp~wipv~~g~gwat~~~~~y 361 (403)
T COG3867 286 TYTLEDGDGHENTFPSSEQTGGYPITV--QGQATFVRDVIEAVKNV--PKSNGLGVFYWEPAWIPVVLGSGWATSYAAKY 361 (403)
T ss_pred eeeeccCCCCCCcCCcccccCCCceEE--echhhHHHHHHHHHHhC--CCCCceEEEEecccceeccCCCccccchhhcc
Confidence 33211 111 1122 23567888877766553 355678999997544333 2344555554443
Q ss_pred EeCCC-------------CccccccchHHHHHHh
Q 009642 496 VDHKD-------------NLQRYPKDSFFWYKSF 516 (530)
Q Consensus 496 VD~~~-------------~~~R~pK~S~~~y~~i 516 (530)
|.++ +..-.|-||...|.-+
T Consensus 362 -~~e~w~~gsavdNqaLfdf~G~~LPSl~vFn~v 394 (403)
T COG3867 362 -DPENWGEGSAVDNQALFDFNGHPLPSLNVFNYV 394 (403)
T ss_pred -CcccccCCCccchhhhhhccCCcCcchhhhhhh
Confidence 2222 2345667777777543
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.75 E-value=0.00012 Score=75.98 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=76.1
Q ss_pred chHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecC--------CCCchhHH
Q 009642 103 RYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFH--------WDLPQVLE 174 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H--------~~~P~wl~ 174 (530)
.|++-++.||++|+|++-+-|.|.-.||.+ |++|+.|..-.+++|+.++++|+.+++-.-= -.+|.||.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC---CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 488999999999999999999999999998 9999999988999999999999997774321 24999998
Q ss_pred hhhCCCC---ChHHHHHHHHHHHHHHHHhcC-------cccEEEeccCCc
Q 009642 175 DEYGGFL---SSEIVKDFGDYADFCFKTFGD-------RVKQWVTMAEPN 214 (530)
Q Consensus 175 ~~~ggw~---~~~~~~~f~~ya~~~~~~~~d-------~V~~W~t~NEp~ 214 (530)
.+.+... ++.+.++-.+|.+.+++...+ -|..-++=||..
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 7633322 345666666666666666644 367788888864
No 26
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.00029 Score=75.71 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCC-hHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhh---CCC
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVN-PLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEY---GGF 180 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n-~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~---ggw 180 (530)
++|+..||++|+|++|.-|.|..+.+.+.....+. ...+.+.+++|+..++.||.+++.||+..-+.-=.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 89999999999999999998665554320002222 33445899999999999999999999976322212211 112
Q ss_pred C-ChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCcc
Q 009642 181 L-SSEIVKDFGDYADFCFKTFGD--RVKQWVTMAEPNS 215 (530)
Q Consensus 181 ~-~~~~~~~f~~ya~~~~~~~~d--~V~~W~t~NEp~~ 215 (530)
. ..+.++.|.+--+.++.+|++ .|....++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 356779999999999999987 4667899999985
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=97.03 E-value=0.004 Score=71.44 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=91.3
Q ss_pred hchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe--------cCCCCchhH
Q 009642 102 HRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL--------FHWDLPQVL 173 (530)
Q Consensus 102 ~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL--------~H~~~P~wl 173 (530)
..|++=++.||.+|+|++-.=|.|...||.+ |++|++|..=..++|+.+.+.|+-+|+-. -.-.+|.||
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~---G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL 135 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP---GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWL 135 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC---CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhh
Confidence 4588999999999999999999999999998 99999999999999999999999888753 234799999
Q ss_pred HhhhC-CC--CChHHHHHHHHHHHHHHHHhc---------CcccEEEeccCCccc
Q 009642 174 EDEYG-GF--LSSEIVKDFGDYADFCFKTFG---------DRVKQWVTMAEPNSI 216 (530)
Q Consensus 174 ~~~~g-gw--~~~~~~~~f~~ya~~~~~~~~---------d~V~~W~t~NEp~~~ 216 (530)
....| -. .++.+.++-.+|.+.+++.++ .-|...++=||...+
T Consensus 136 ~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~ 190 (840)
T PLN03059 136 KYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPV 190 (840)
T ss_pred hcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccce
Confidence 85423 11 256777777788888888774 237888999997644
No 28
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.87 E-value=0.0023 Score=67.34 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=59.6
Q ss_pred HHcCCCeEEecc---cC------------CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhh
Q 009642 112 KETGLDSFRFSI---SW------------PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDE 176 (530)
Q Consensus 112 k~lG~~~~R~si---~W------------~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~ 176 (530)
+.+|++.+||.| ++ .|.+--...+|.+|+.+=+-=+.++++.+++|++-++ ++-+..|.|+...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 469999999998 43 3332111123788886655566799999999999655 8888999999764
Q ss_pred hC----C-----CCChHHHHHHHHHHHHHHHHhcC---cccEEEeccCCcc
Q 009642 177 YG----G-----FLSSEIVKDFGDYADFCFKTFGD---RVKQWVTMAEPNS 215 (530)
Q Consensus 177 ~g----g-----w~~~~~~~~f~~ya~~~~~~~~d---~V~~W~t~NEp~~ 215 (530)
| + =+.++..+.|++|-..|+++|.+ .+++-.++|||+.
T Consensus 136 -G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 -GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp -SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred -CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 2 1 14568899999999999999943 5999999999984
No 29
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.65 E-value=0.0025 Score=67.29 Aligned_cols=106 Identities=20% Similarity=0.365 Sum_probs=80.6
Q ss_pred hhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe-cC-----------CC
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL-FH-----------WD 168 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL-~H-----------~~ 168 (530)
+.-.+.+++.+|++|+..+-+.+=|..+|+.+. +++|+ ..|+++.+.+++.|++..+.| +| .-
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p--~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGP--QQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSST--TB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCC--CccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 347899999999999999999999999999964 89999 559999999999999998876 34 36
Q ss_pred CchhHHhh-----------hCC--------CCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009642 169 LPQVLEDE-----------YGG--------FLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPN 214 (530)
Q Consensus 169 ~P~wl~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~ 214 (530)
||.|+.+. .|. |....+++.|.+|-+-..++|.+.. -|+-|..
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred CCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 89998752 233 4444559999999999999998865 5565543
No 30
>PLN02161 beta-amylase
Probab=96.64 E-value=0.0063 Score=65.61 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=86.9
Q ss_pred cchhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCC----------
Q 009642 98 IDFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHW---------- 167 (530)
Q Consensus 98 ~d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---------- 167 (530)
.++..-.+..++.+|.+|+..+-+.+=|.-+|+.+. +++|| ..|+++++.+++.|++..+.|.-.
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p--~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSP--LEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCC--CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 466777889999999999999999999999999875 99999 559999999999999988876433
Q ss_pred --CCchhHHhh-----------hCCCCC----------------hHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009642 168 --DLPQVLEDE-----------YGGFLS----------------SEIVKDFGDYADFCFKTFGDRVKQWVTMAEPN 214 (530)
Q Consensus 168 --~~P~wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~ 214 (530)
.+|.|+.+. .-|..| +.-++.|.+|-+-..++|.+... -|+.|..
T Consensus 188 ~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~ 261 (531)
T PLN02161 188 GISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEIS 261 (531)
T ss_pred CccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 499998762 112222 22457899999988888888664 3666654
No 31
>PLN02803 beta-amylase
Probab=96.60 E-value=0.0066 Score=65.83 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=84.3
Q ss_pred hhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCC------------C
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHW------------D 168 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~------------~ 168 (530)
-.-.+..++.+|++|+..+-+.+=|..+|+.+. +++|| ..|+++++.+++.|++..+.|.-. -
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p--~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 180 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGP--MKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCC--CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 344788999999999999999999999999874 99999 559999999999999988876433 5
Q ss_pred CchhHHhh-----------hCCCCC----------------hHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009642 169 LPQVLEDE-----------YGGFLS----------------SEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNS 215 (530)
Q Consensus 169 ~P~wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~ 215 (530)
+|.|+.+. .-|..| +.-++.|.+|-+-..++|.+... -|+.|..+
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 99998762 112222 23457788898888888888664 46666543
No 32
>PLN00197 beta-amylase; Provisional
Probab=96.50 E-value=0.011 Score=64.32 Aligned_cols=107 Identities=19% Similarity=0.258 Sum_probs=84.2
Q ss_pred hhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCC------------C
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHW------------D 168 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~------------~ 168 (530)
-.-.+..++.+|.+|+..+-+.+=|..+|+.+. +++|| ..|+++++.+++.|++..+.|.-. -
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p--~~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~Ip 200 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESP--GVYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIP 200 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 345789999999999999999999999999875 99999 559999999999999988876433 5
Q ss_pred CchhHHhh-----------hCCCCC----------------hHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009642 169 LPQVLEDE-----------YGGFLS----------------SEIVKDFGDYADFCFKTFGDRVKQWVTMAEPN 214 (530)
Q Consensus 169 ~P~wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~ 214 (530)
+|.|+.+. ..|..| +.-++.|.+|-+-..++|.+... -|+.|..
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~ 271 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQ 271 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEE
Confidence 99998762 112222 22368899999998888888665 3566654
No 33
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.25 E-value=0.032 Score=57.20 Aligned_cols=105 Identities=14% Similarity=0.258 Sum_probs=63.9
Q ss_pred hHHHHHHHHHcCCCeEEecc--cCCcc-c----cCCCC----C-----CCCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Q 009642 104 YKEDIKLMKETGLDSFRFSI--SWPRL-L----PKGKI----S-----GGVNPLGVQFYNNLIDELIANGIKPFVTLFHW 167 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si--~W~ri-~----P~~~~----~-----g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~ 167 (530)
++.=++..|+-|+|.+|+.+ .|... . |.... . ..+|.+=.++.+++|+.|.+.||+|.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34457778999999999999 55543 1 11100 0 1378888999999999999999999887666
Q ss_pred CCchhHHhhhCCCCC---hHHHHHHHHHHHHHHHHhcCc-ccEEEeccCC
Q 009642 168 DLPQVLEDEYGGFLS---SEIVKDFGDYADFCFKTFGDR-VKQWVTMAEP 213 (530)
Q Consensus 168 ~~P~wl~~~~ggw~~---~~~~~~f~~ya~~~~~~~~d~-V~~W~t~NEp 213 (530)
..|. .+ |.|-. .-..+.-.+|.++|++||+.. =..|++-||-
T Consensus 111 g~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCcc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 2222 11 44543 334677888999999999998 3779999885
No 34
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.21 E-value=0.025 Score=56.37 Aligned_cols=67 Identities=22% Similarity=0.389 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCCCcccccccccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEeccccccc
Q 009642 406 KGIKDFMLYIKSKYNNPAIYITENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFE 482 (530)
Q Consensus 406 ~GL~~~L~~i~~rY~~ppI~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~E 482 (530)
.++...|..++++|++| |.|||-|+.... ..-.+....+|+++-+..+.+ ---|.+|+..+.++..+
T Consensus 151 ~~~~~~i~~~~~~~~kP-IWITEf~~~~~~-----~~~~~~~~~~fl~~~~~~ld~----~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYGKP-IWITEFGCWNGG-----SQGSDEQQASFLRQALPWLDS----QPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHHhCCC-EEEEeecccCCC-----CCCCHHHHHHHHHHHHHHHhc----CCCeeEEEecccccccC
Confidence 36788999999999965 999999986521 122345566776666655543 46799999988555433
No 35
>PLN02905 beta-amylase
Probab=96.16 E-value=0.024 Score=62.50 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=80.7
Q ss_pred cchhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCC----------
Q 009642 98 IDFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHW---------- 167 (530)
Q Consensus 98 ~d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---------- 167 (530)
..+..-.+..++.+|.+|+..+-+.+=|..+|+.+. +++|| ..|+++++.+++.|++..+.|.-.
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP--~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAP--QEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCC--CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 356667889999999999999999999999999875 99999 559999999999999988876433
Q ss_pred --CCchhHHhh-----------hCCCCC----------------hHHHHHHHHHHHHHHHHhcCcc
Q 009642 168 --DLPQVLEDE-----------YGGFLS----------------SEIVKDFGDYADFCFKTFGDRV 204 (530)
Q Consensus 168 --~~P~wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~d~V 204 (530)
-||.|+.+. .-|..| +.-++.|.+|.+-..++|.+.+
T Consensus 357 ~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl 422 (702)
T PLN02905 357 CIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFF 422 (702)
T ss_pred cccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 599998762 112222 2345888888888888887753
No 36
>PLN02801 beta-amylase
Probab=96.13 E-value=0.033 Score=60.24 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=79.4
Q ss_pred hhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCC------------
Q 009642 100 FYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHW------------ 167 (530)
Q Consensus 100 ~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~------------ 167 (530)
+-.-.+..++.+|++|+..+-+.+=|..+|..+. +++|| ..|+++++.+++.|++..+.|.-.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P--~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~I 109 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGP--KQYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNI 109 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--CccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3445789999999999999999999999999874 99999 559999999999999987776433
Q ss_pred CCchhHHhh-----------hCCCCC----------------hHHHHHHHHHHHHHHHHhcCcc
Q 009642 168 DLPQVLEDE-----------YGGFLS----------------SEIVKDFGDYADFCFKTFGDRV 204 (530)
Q Consensus 168 ~~P~wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~d~V 204 (530)
-+|.|+.+. .-|..| +.-++.|.+|-+-..++|.+..
T Consensus 110 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 110 PIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 599998762 112111 2346889999999888888754
No 37
>PLN02705 beta-amylase
Probab=95.99 E-value=0.03 Score=61.57 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=78.8
Q ss_pred hhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCC------------
Q 009642 100 FYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHW------------ 167 (530)
Q Consensus 100 ~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~------------ 167 (530)
+-.-.+..++.+|.+|+..+-+.+=|..+|..+. +++|| ..|+++++.+++.|++..+.|.-.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P--~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 340 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNP--QKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMI 340 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCC--CcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccc
Confidence 4455889999999999999999999999999874 99999 559999999999999987776433
Q ss_pred CCchhHHhh-----------hCCCCC----------------hHHHHHHHHHHHHHHHHhcCcc
Q 009642 168 DLPQVLEDE-----------YGGFLS----------------SEIVKDFGDYADFCFKTFGDRV 204 (530)
Q Consensus 168 ~~P~wl~~~-----------~ggw~~----------------~~~~~~f~~ya~~~~~~~~d~V 204 (530)
-||.|+.+. .-|..| +.-++.|.+|.+-.-++|.+.+
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl 404 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLF 404 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 599998762 112221 2335888888888888887753
No 38
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.60 E-value=0.098 Score=49.26 Aligned_cols=105 Identities=21% Similarity=0.386 Sum_probs=70.0
Q ss_pred hchHHHHHHHHHcCCCeEEecccCCcc-----ccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhh
Q 009642 102 HRYKEDIKLMKETGLDSFRFSISWPRL-----LPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDE 176 (530)
Q Consensus 102 ~r~~eDi~l~k~lG~~~~R~si~W~ri-----~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~ 176 (530)
.+|+++++.||++||+++=+- |+.. .|..-..+.+.....+....+++++.++||+++|.|+.. |.|....
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~--~~~w~~~ 95 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD--PDYWDQG 95 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC--chhhhcc
Confidence 469999999999999987432 4443 233200122333455789999999999999999999863 3454421
Q ss_pred hCCCCChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCc
Q 009642 177 YGGFLSSEIVKDFGDYADFCFKTFGD--RVKQWVTMAEPN 214 (530)
Q Consensus 177 ~ggw~~~~~~~~f~~ya~~~~~~~~d--~V~~W~t~NEp~ 214 (530)
.-.| -++.=..-++.+.++||. .+..|-+-.|+.
T Consensus 96 ~~~~----~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 96 DLDW----EAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred CHHH----HHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 0112 233334567788888887 477888888875
No 39
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.33 E-value=0.074 Score=59.19 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=90.7
Q ss_pred chHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe--------cCCCCchhHH
Q 009642 103 RYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL--------FHWDLPQVLE 174 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL--------~H~~~P~wl~ 174 (530)
.|++=|+.+|++|+|+.-.=+-|.-.||.+ |++|++|.--..++|..+.++|+-+++-+ .+-.+|.||.
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~---g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP---GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC---CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 478889999999999999999999999999 99999999889999999999998766643 4567999998
Q ss_pred hhhCCC---CChHHHHHHHHHHHHHHHHhc-------CcccEEEeccCCc
Q 009642 175 DEYGGF---LSSEIVKDFGDYADFCFKTFG-------DRVKQWVTMAEPN 214 (530)
Q Consensus 175 ~~~ggw---~~~~~~~~f~~ya~~~~~~~~-------d~V~~W~t~NEp~ 214 (530)
...|.- .|+.+-.++.+|.+.++...+ .=|..-++=||..
T Consensus 127 ~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 127 NVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 764432 267888999999999998543 2377888899976
No 40
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.50 E-value=0.15 Score=61.15 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=65.0
Q ss_pred hhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEec---CCCCchhHHhh
Q 009642 100 FYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLF---HWDLPQVLEDE 176 (530)
Q Consensus 100 ~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~---H~~~P~wl~~~ 176 (530)
...+++.||++||++|+|++|+| ..|.. . ++.+.|=+.||-++--.. |.-.|. .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------p-------~fydlcDe~GilV~dE~~~e~hg~~~~---~- 425 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------P-------LWYELCDRYGLYVVDEANIETHGMVPM---N- 425 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------H-------HHHHHHHHcCCEEEEecCccccCCccc---c-
Confidence 45678999999999999999995 24432 1 566888899997765432 211111 0
Q ss_pred hCCCCChHHHHHHHHHHHHHHHHhcCc--ccEEEeccCCc
Q 009642 177 YGGFLSSEIVKDFGDYADFCFKTFGDR--VKQWVTMAEPN 214 (530)
Q Consensus 177 ~ggw~~~~~~~~f~~ya~~~~~~~~d~--V~~W~t~NEp~ 214 (530)
-...+++..+.+.+=++.+++|..+. |..|...||+.
T Consensus 426 -~~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 426 -RLSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 01124667778888899999999885 89999999975
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.62 E-value=0.29 Score=58.71 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=64.6
Q ss_pred hhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEec---C-CCCchhHHh
Q 009642 100 FYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLF---H-WDLPQVLED 175 (530)
Q Consensus 100 ~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~---H-~~~P~wl~~ 175 (530)
....++.||++||++|+|++|+| ..|.. . .+.+.|=+.||-++--.. | |.....+
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~-------~-------~fydlcDe~GllV~dE~~~e~~g~~~~~~~-- 411 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND-------P-------RFYELCDIYGLFVMAETDVESHGFANVGDI-- 411 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------H-------HHHHHHHHCCCEEEECCcccccCccccccc--
Confidence 35778999999999999999996 24543 1 677889999997666331 1 1111000
Q ss_pred hhCCC--CChHHHHHHHHHHHHHHHHhcCc--ccEEEeccCCc
Q 009642 176 EYGGF--LSSEIVKDFGDYADFCFKTFGDR--VKQWVTMAEPN 214 (530)
Q Consensus 176 ~~ggw--~~~~~~~~f~~ya~~~~~~~~d~--V~~W~t~NEp~ 214 (530)
.+ .++...+.|.+=++.+++|.++. |-.|..-||..
T Consensus 412 ---~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 ---SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred ---ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 11 23456677888899999999885 89999999973
No 42
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=93.18 E-value=0.36 Score=56.16 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=67.8
Q ss_pred cchhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhh
Q 009642 98 IDFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEY 177 (530)
Q Consensus 98 ~d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ 177 (530)
+-.+..++.|++|||++|+|++|.| -.|.. ..+.+.|-+.||=++=-..+ +- .
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~--------------~~~ydLcDelGllV~~Ea~~-----~~---~ 369 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS--------------EEFYDLCDELGLLVIDEAMI-----ET---H 369 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC--------------HHHHHHHHHhCcEEEEecch-----hh---c
Confidence 4456679999999999999999998 55554 15667777889976653322 21 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCc--ccEEEeccCCc
Q 009642 178 GGFLSSEIVKDFGDYADFCFKTFGDR--VKQWVTMAEPN 214 (530)
Q Consensus 178 ggw~~~~~~~~f~~ya~~~~~~~~d~--V~~W~t~NEp~ 214 (530)
|...+++..+...+=++.+++|-++. |..|..-||.+
T Consensus 370 ~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 370 GMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 44456677778888899999999874 89999999966
No 43
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=89.87 E-value=19 Score=39.96 Aligned_cols=99 Identities=14% Similarity=0.212 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCcccccccccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEeccc-c---cccccCC
Q 009642 411 FMLYIKSKYNNPAIYITENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFL-D---NFEWDAG 486 (530)
Q Consensus 411 ~L~~i~~rY~~ppI~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~-D---n~EW~~G 486 (530)
.|..++++|+...|+-||...+..... .....-.-.|.. ++...+...+..| +.||..|.|+ | ..-|..+
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~-~~~~~g~w~~~~---~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~~n 392 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWD-TSVDLGSWDRAE---RYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWVGN 392 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS--SS-TTHHHHHH---HHHHHHHHHHHTT--EEEEEEEESEBETTS---TT--
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCcc-cccccccHHHHH---HHHHHHHHHHHhh--ceeeeeeeeecCCCCCCcccCC
Confidence 467889999887899999866543210 000011123332 3344455566666 5799999985 3 2224433
Q ss_pred CccceeEEEEeCCCCccccccchHHHHHHhhc
Q 009642 487 FTVGFGMVYVDHKDNLQRYPKDSFFWYKSFLA 518 (530)
Q Consensus 487 y~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~ 518 (530)
+.. ..+-||.++ .+-+..+.++.++++-|
T Consensus 393 ~~d--~~iivd~~~-~~~~~~p~yY~~gHfSK 421 (496)
T PF02055_consen 393 FCD--APIIVDSDT-GEFYKQPEYYAMGHFSK 421 (496)
T ss_dssp -B----SEEEEGGG-TEEEE-HHHHHHHHHHT
T ss_pred CCC--ceeEEEcCC-CeEEEcHHHHHHHHHhc
Confidence 333 335578876 66666777876666543
No 44
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=89.63 E-value=0.92 Score=45.08 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCC--------------CCchhHHhh----------------h-CC---CCChH---HH
Q 009642 144 QFYNNLIDELIANGIKPFVTLFHW--------------DLPQVLEDE----------------Y-GG---FLSSE---IV 186 (530)
Q Consensus 144 ~~y~~~i~~l~~~GI~p~vtL~H~--------------~~P~wl~~~----------------~-gg---w~~~~---~~ 186 (530)
+.++.+|+.-+++|.++|+||.=- ..|.|-..+ . |. ..+|. ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 678999999999999999998532 122221111 0 11 11333 01
Q ss_pred HHHHHHHHHHHHHhcCc-----ccEEEeccCCcccccccccccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 009642 187 KDFGDYADFCFKTFGDR-----VKQWVTMAEPNSISIGGYAIGVYAPGRCSSSLGSNCAAGDSATEPYIVSHNLLLSHAT 261 (530)
Q Consensus 187 ~~f~~ya~~~~~~~~d~-----V~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~ 261 (530)
..-.+++..+..+||.. |++|..-|||.+-..- -..+||-+ ..+.-+.....+.|+
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~T--H~dVHP~~-----------------~t~~El~~r~i~~Ak 164 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHST--HRDVHPEP-----------------VTYDELRDRSIEYAK 164 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHH--TTTT--S--------------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhccc--ccccCCCC-----------------CCHHHHHHHHHHHHH
Confidence 22334477777888775 9999999999864210 01223322 124455666777888
Q ss_pred HHHHHHHhccCCCCccEEEE
Q 009642 262 AVKLYKEKYQGHQKGEIGIT 281 (530)
Q Consensus 262 A~~~~r~~~~~~~~g~IGi~ 281 (530)
|+| +..|. .-.+|-+
T Consensus 165 aiK---~~DP~--a~v~GP~ 179 (239)
T PF12891_consen 165 AIK---AADPD--AKVFGPV 179 (239)
T ss_dssp HHH---HH-TT--SEEEEEE
T ss_pred HHH---hhCCC--CeEeech
Confidence 755 45553 2235555
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=88.69 E-value=0.23 Score=53.49 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=80.1
Q ss_pred hHHHHHHHHHcCCCeEEecccC-CccccCCCCCCCCChHH-HHHHHHHHHHHHHCCCeEEEEec----CCCCchhHHhhh
Q 009642 104 YKEDIKLMKETGLDSFRFSISW-PRLLPKGKISGGVNPLG-VQFYNNLIDELIANGIKPFVTLF----HWDLPQVLEDEY 177 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W-~ri~P~~~~~g~~n~~g-l~~y~~~i~~l~~~GI~p~vtL~----H~~~P~wl~~~~ 177 (530)
.+.|++.|+.+|++..|.+|.= .. .-+. .|..|.+. +.+.+.+++.+...+|+.++||. |+.--.|-..=.
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEd-c~d~--~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwa 104 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGED-CRDK--EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWA 104 (587)
T ss_pred hhcccccccCccceeEEEEEecCcc-hhhh--hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecC
Confidence 4578999999999999999632 22 1222 27777776 88999999999999999999975 433222221101
Q ss_pred CC------CCChHHHHHHHHHHHHHHHHhcC--cccEEEeccCCcc
Q 009642 178 GG------FLSSEIVKDFGDYADFCFKTFGD--RVKQWVTMAEPNS 215 (530)
Q Consensus 178 gg------w~~~~~~~~f~~ya~~~~~~~~d--~V~~W~t~NEp~~ 215 (530)
|+ ...+.+...|.+|++.+++.|+. .+--|..-|||.+
T Consensus 105 g~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 105 GEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 22 33567788899999999998886 5788999999766
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=86.00 E-value=3.4 Score=37.41 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCeEEeccc--CCcc-ccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecC-C------CCchhHHh
Q 009642 106 EDIKLMKETGLDSFRFSIS--WPRL-LPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFH-W------DLPQVLED 175 (530)
Q Consensus 106 eDi~l~k~lG~~~~R~si~--W~ri-~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H-~------~~P~wl~~ 175 (530)
+=++.||++|+|+.-+... +.-. .|...-.-.+..+ -+...++|++|+++||++++=+.. + ..|.|+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~ 82 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVR 82 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeE
Confidence 4468899999999999443 2211 2332200112333 488999999999999999985443 2 47888764
Q ss_pred hhC------------CCC----ChHHHHHHHHHHHHHHHHh
Q 009642 176 EYG------------GFL----SSEIVKDFGDYADFCFKTF 200 (530)
Q Consensus 176 ~~g------------gw~----~~~~~~~f~~ya~~~~~~~ 200 (530)
... ||. |....+...+-.+.++++|
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 83 DADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred CCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 322 243 4566677777777777777
No 47
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=85.67 E-value=4.7 Score=41.66 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=51.3
Q ss_pred chHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCC
Q 009642 103 RYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLS 182 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~ 182 (530)
-.+.||.+||+||+|+.|+= -|-|.. | .+.-++.|.++||-+++.|... ..-+ ++...|.+
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~------n------Hd~CM~~~~~aGIYvi~Dl~~p--~~sI-~r~~P~~s 114 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK------N------HDECMSAFADAGIYVILDLNTP--NGSI-NRSDPAPS 114 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS--------------HHHHHHHHHTT-EEEEES-BT--TBS---TTS----
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC------C------HHHHHHHHHhCCCEEEEecCCC--Cccc-cCCCCcCC
Confidence 57899999999999999973 233443 2 6788999999999999999543 1111 11111111
Q ss_pred hHHHHHHHHHHHHHHHHhcC--cccEEEeccCC
Q 009642 183 SEIVKDFGDYADFCFKTFGD--RVKQWVTMAEP 213 (530)
Q Consensus 183 ~~~~~~f~~ya~~~~~~~~d--~V~~W~t~NEp 213 (530)
- ....|.+| ..+++.|.. .|-....=||-
T Consensus 115 w-~~~l~~~~-~~vid~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 115 W-NTDLLDRY-FAVIDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp ---HHHHHHH-HHHHHHHTT-TTEEEEEEEESS
T ss_pred C-CHHHHHHH-HHHHHHhccCCceEEEEeccee
Confidence 1 12344444 445667765 36666666764
No 48
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=85.23 E-value=8.9 Score=39.48 Aligned_cols=87 Identities=24% Similarity=0.394 Sum_probs=61.2
Q ss_pred hhchHHHHHHHHHcCCCeEEecc---cCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhh
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSI---SWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEY 177 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si---~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ 177 (530)
..||.+-.+++++.|||..-+.= .-.++-|+ -++-+.++-+.++..||++.+++. |.-|.-+
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~~----------~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l---- 120 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTPE----------YLDKVARLADVFRPYGIKVYLSVN-FASPIEL---- 120 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGSTT----------THHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCHH----------HHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----
Confidence 46889999999999999976542 22222222 256677999999999999999984 5677654
Q ss_pred CCC-----CChHHHHHHHHHHHHHHHHhcC
Q 009642 178 GGF-----LSSEIVKDFGDYADFCFKTFGD 202 (530)
Q Consensus 178 ggw-----~~~~~~~~f~~ya~~~~~~~~d 202 (530)
||. ++++++.++.+=++.+.++..|
T Consensus 121 ggL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 121 GGLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp TS-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CCcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 554 4689999999999999999887
No 49
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=80.35 E-value=2.5 Score=45.00 Aligned_cols=99 Identities=14% Similarity=0.207 Sum_probs=70.7
Q ss_pred HHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCC-h-HHHHH
Q 009642 111 MKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLS-S-EIVKD 188 (530)
Q Consensus 111 ~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~-~-~~~~~ 188 (530)
-+|+|+|..|.---|.-++-. =-+++ .++++++|.+...|+.=+.+-.||+.+.=-...+.+=.. + ...+.
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~----~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK----LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhceeeehhcceeeeeecc----ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 368899999888888833333 23666 889999999999995555566777777544332223222 2 47799
Q ss_pred HHHHHHHHHHHhcCc---ccEEEeccCCccc
Q 009642 189 FGDYADFCFKTFGDR---VKQWVTMAEPNSI 216 (530)
Q Consensus 189 f~~ya~~~~~~~~d~---V~~W~t~NEp~~~ 216 (530)
++.+++.|+.++|-+ .-....+||||..
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCcc
Confidence 999999999999953 3445788999865
No 50
>smart00642 Aamy Alpha-amylase domain.
Probab=77.80 E-value=6.2 Score=37.01 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=43.5
Q ss_pred chhhchHHHHHHHHHcCCCeEEecccCCcccc--CCC-CC----CCCC--hHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 99 DFYHRYKEDIKLMKETGLDSFRFSISWPRLLP--KGK-IS----GGVN--PLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 99 d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P--~~~-~~----g~~n--~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
..+....+-+.-+++||++++-++=-+..... ... .. -.++ .-..+-++++|++|+++||++|+.+
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44566778888999999999988765444421 100 00 0111 1123558899999999999999864
No 51
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=75.60 E-value=12 Score=38.94 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=66.4
Q ss_pred hhhchHHHHHHHHHcCCCeEEeccc-------------CCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe--
Q 009642 100 FYHRYKEDIKLMKETGLDSFRFSIS-------------WPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL-- 164 (530)
Q Consensus 100 ~y~r~~eDi~l~k~lG~~~~R~si~-------------W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL-- 164 (530)
+-...++=++.|+++|+|++=+-+. |++..+... |. + .|.+-...+|++++++||+...-+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~--~~-~-pg~DpL~~~I~eaHkrGlevHAW~~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQ--GK-D-PGFDPLEFMIEEAHKRGLEVHAWFRV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCC--CC-C-CCccHHHHHHHHHHHcCCEEEEEEEe
Confidence 3455788899999999998665553 443332211 11 1 245678899999999999988544
Q ss_pred --cC-------CCCchhHHhh-------h----C--CCCC---hHHHHHHHHHHHHHHHHhc
Q 009642 165 --FH-------WDLPQVLEDE-------Y----G--GFLS---SEIVKDFGDYADFCFKTFG 201 (530)
Q Consensus 165 --~H-------~~~P~wl~~~-------~----g--gw~~---~~~~~~f~~ya~~~~~~~~ 201 (530)
.. -..|.|+..+ . | .|.| |++.+...+-++.|+++|.
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 11 1357775521 1 2 2565 5899999999999999995
No 52
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=74.96 E-value=4.1 Score=42.32 Aligned_cols=83 Identities=20% Similarity=0.381 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHh--cCCCcEEEEcCCCCCCcccccccccCChHHHHHHHHHHHHHHHHHHcCCceE-----EEEEecccc
Q 009642 407 GIKDFMLYIKSK--YNNPAIYITENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIKEGVHVK-----GYYAWSFLD 479 (530)
Q Consensus 407 GL~~~L~~i~~r--Y~~ppI~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~-----GY~~WSl~D 479 (530)
.+.+.+...-++ +++.+|+|||.||+..... ..+. .==+.+.+.+.+.+.+|.+.+ -+++-++.|
T Consensus 211 a~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~--~a~~------~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~Fd 282 (310)
T PF00332_consen 211 AMVDAVYAAMEKLGFPNVPVVVGETGWPSAGDP--GATP------ENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFD 282 (310)
T ss_dssp HHHHHHHHHHHTTT-TT--EEEEEE---SSSST--TCSH------HHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB-
T ss_pred HHHHHHHHHHHHhCCCCceeEEeccccccCCCC--CCCc------chhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEec
Confidence 345566666565 4566899999999987630 0011 111334445555555666643 467777777
Q ss_pred cccccCC--CccceeEEEEeC
Q 009642 480 NFEWDAG--FTVGFGMVYVDH 498 (530)
Q Consensus 480 n~EW~~G--y~~rfGL~~VD~ 498 (530)
- .|..| .++.|||++-|.
T Consensus 283 E-~~K~~~~~E~~wGlf~~d~ 302 (310)
T PF00332_consen 283 E-NWKPGPEVERHWGLFYPDG 302 (310)
T ss_dssp --TTSSSSGGGGG--SB-TTS
T ss_pred C-cCCCCCcccceeeeECCCC
Confidence 4 55555 588999998664
No 53
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.71 E-value=16 Score=39.78 Aligned_cols=113 Identities=16% Similarity=0.302 Sum_probs=73.1
Q ss_pred hhchHHHHHHHHHcCCCeEEec----ccCCccccCCC--------------------------CCCCCChH----HHHHH
Q 009642 101 YHRYKEDIKLMKETGLDSFRFS----ISWPRLLPKGK--------------------------ISGGVNPL----GVQFY 146 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~s----i~W~ri~P~~~--------------------------~~g~~n~~----gl~~y 146 (530)
|.||+..|+-|+-.|||..=.- +-|-+|+-.-. -+|..... -+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6899999999999999965433 23455543311 01322221 12223
Q ss_pred HHHHHHHHHCCCeEEEEecCCCCchhHHhh--------hCCCCC---------------hHHHHHHHHHHHHHHHHhcC-
Q 009642 147 NNLIDELIANGIKPFVTLFHWDLPQVLEDE--------YGGFLS---------------SEIVKDFGDYADFCFKTFGD- 202 (530)
Q Consensus 147 ~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~--------~ggw~~---------------~~~~~~f~~ya~~~~~~~~d- 202 (530)
.++|+++++-||+|++..+---.|..|..- .+.|.+ |-+.+-=..|.+...++||.
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 689999999999999999888899988752 233432 33445555677778888985
Q ss_pred -cccEEEeccCC
Q 009642 203 -RVKQWVTMAEP 213 (530)
Q Consensus 203 -~V~~W~t~NEp 213 (530)
.+-.==||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 34344477774
No 54
>PLN02361 alpha-amylase
Probab=62.50 E-value=16 Score=39.45 Aligned_cols=68 Identities=13% Similarity=0.308 Sum_probs=45.7
Q ss_pred chhhchHHHHHHHHHcCCCeEEecccCCccccCCCCC---CCCCh--HHHHHHHHHHHHHHHCCCeEEEE--ecC
Q 009642 99 DFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKIS---GGVNP--LGVQFYNNLIDELIANGIKPFVT--LFH 166 (530)
Q Consensus 99 d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~---g~~n~--~gl~~y~~~i~~l~~~GI~p~vt--L~H 166 (530)
.+|....+-+.-+++||++++=++=...-.-+.|-.. -.+|. -..+=++++|++|+++||++|+. +.|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 4899999999999999999987765433222221100 00010 01244889999999999999985 566
No 55
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=62.50 E-value=33 Score=35.32 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=51.5
Q ss_pred HHHHHcCCCeEEeccc--CCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHH
Q 009642 109 KLMKETGLDSFRFSIS--WPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIV 186 (530)
Q Consensus 109 ~l~k~lG~~~~R~si~--W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~ 186 (530)
..+++.|++.+-++.. -..-.|.-. |.............|..|+++|.+++|.+--+.-.... .+...+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~--g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~-------~~~~~~ 89 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG--GSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLA-------TSCTSA 89 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC--CCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCccc-------cCcccH
Confidence 5677889998887652 222222210 11110012445678999999999999988333221100 034678
Q ss_pred HHHHHHHHHHHHHhc
Q 009642 187 KDFGDYADFCFKTFG 201 (530)
Q Consensus 187 ~~f~~ya~~~~~~~~ 201 (530)
+.|++....+.++|+
T Consensus 90 ~~~~~a~~~~i~~y~ 104 (294)
T cd06543 90 DQLAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888888887
No 56
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=60.37 E-value=21 Score=36.24 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeEEecccCCc--cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009642 105 KEDIKLMKETGLDSFRFSISWPR--LLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT 163 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~r--i~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt 163 (530)
+|.+++||++|++.+-++++ .. +.+.- .+..+. +.+.+.++.++++||.+.++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i--~~~~s~---~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNI--ISTHTY---DDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhc--cCCCCH---HHHHHHHHHHHHcCCEEEEe
Confidence 79999999999999999998 42 33332 122343 66789999999999986544
No 57
>PRK12313 glycogen branching enzyme; Provisional
Probab=60.19 E-value=34 Score=39.10 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=62.4
Q ss_pred hhchHHHH-HHHHHcCCCeEEecc--------cC-------CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE-
Q 009642 101 YHRYKEDI-KLMKETGLDSFRFSI--------SW-------PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT- 163 (530)
Q Consensus 101 y~r~~eDi-~l~k~lG~~~~R~si--------~W-------~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt- 163 (530)
|.-..+.+ .-+|+||++++=+.= +| -.|.|.- |. .+=++++|++|.++||++|+.
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~---Gt-----~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY---GT-----PEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 44455674 889999999986432 22 2233332 43 344889999999999999997
Q ss_pred -ecCCCCch----hHH--------hh----hCCC-------CChHHHHHHHHHHHHHHHHhcCcccEEE
Q 009642 164 -LFHWDLPQ----VLE--------DE----YGGF-------LSSEIVKDFGDYADFCFKTFGDRVKQWV 208 (530)
Q Consensus 164 -L~H~~~P~----wl~--------~~----~ggw-------~~~~~~~~f~~ya~~~~~~~~d~V~~W~ 208 (530)
..|..... ++. +. ...| .|+++.+.+.+-++.-+++|+ |+.|=
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~R 307 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGLR 307 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEEE
Confidence 55643111 110 00 0123 367888888998888888886 44443
No 58
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=59.92 E-value=28 Score=34.95 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
.+|++++.+.|++.+|+.++.|.+.-...+ +.=..++++-..++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 789999999999999999988876433211 33345678889999999999999987665
No 59
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=59.26 E-value=32 Score=33.80 Aligned_cols=78 Identities=21% Similarity=0.431 Sum_probs=52.3
Q ss_pred ccchhhchHHHHHHHHHcCCCeEEe----------------------cccCCccccCCCCCCCCChHHHHHHHHHHHHHH
Q 009642 97 AIDFYHRYKEDIKLMKETGLDSFRF----------------------SISWPRLLPKGKISGGVNPLGVQFYNNLIDELI 154 (530)
Q Consensus 97 a~d~y~r~~eDi~l~k~lG~~~~R~----------------------si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~ 154 (530)
+.+---.-+.=|+|||+||.++..| ++ | +||.| | +|. +.+..+++.++
T Consensus 130 ~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG---G-Idl---~Nf~~I~~i~l 199 (236)
T TIGR03581 130 GKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG---G-IDL---DNFEEIVQIAL 199 (236)
T ss_pred CCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC---C-ccH---HhHHHHHHHHH
Confidence 3344445678899999999998876 33 3 58876 4 775 78899999999
Q ss_pred HCCCeEEEEecC-CCCchhHHhhhCCCCChHHHHHH
Q 009642 155 ANGIKPFVTLFH-WDLPQVLEDEYGGFLSSEIVKDF 189 (530)
Q Consensus 155 ~~GI~p~vtL~H-~~~P~wl~~~~ggw~~~~~~~~f 189 (530)
+.|++-++- | |. -.-|+..|-+.++-+...
T Consensus 200 daGv~kviP--HIYs---siIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 200 DAGVEKVIP--HVYS---SIIDKETGNTRVEDVKQL 230 (236)
T ss_pred HcCCCeecc--ccce---eccccccCCCCHHHHHHH
Confidence 999986652 2 11 112333566666555443
No 60
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=57.67 E-value=9.3 Score=38.16 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCC---------CCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISG---------GVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g---------~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
..+-++-+|+|||+++-++=-+. .|... .| ....-..+=+++||++|+++||++|+.+
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~--~~~~~-~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFE--SPNGY-HGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EE--SSSST-TTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccc--ccccc-ccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 35667889999999988874333 11000 01 0111234568999999999999999975
No 61
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=57.38 E-value=71 Score=32.60 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=64.3
Q ss_pred cccchhhchHHHHHHHHHcCCCeEEecccCCccccCCC--CCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCC-----
Q 009642 96 VAIDFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGK--ISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWD----- 168 (530)
Q Consensus 96 ~a~d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~--~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~----- 168 (530)
.+.-.+.++++=|+.++++|+..+=+.--|+.-..... ....... ....++++-.+++|+.++|-.+|-+
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~ 102 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVDYAKEKGVGIWLWYHSETGGNVA 102 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHHHHHHTT-EEEEEEECCHTTBHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCc---cCHHHHHHHHHHcCCCEEEEEeCCcchhhH
Confidence 35557888999999999999999999999997332211 0011111 4477999999999999999888865
Q ss_pred -CchhHHh------hhC------CC---CChHHHHHHHHHHHHHHHH
Q 009642 169 -LPQVLED------EYG------GF---LSSEIVKDFGDYADFCFKT 199 (530)
Q Consensus 169 -~P~wl~~------~~g------gw---~~~~~~~~f~~ya~~~~~~ 199 (530)
+=.-+.+ +.| ++ .+...++.|.+.++.++++
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 1111211 111 22 3457788888888887754
No 62
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=57.04 E-value=40 Score=37.83 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=41.5
Q ss_pred hhhchHHHHHHHHHcCCCeEEecc--------cC-------CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE-
Q 009642 100 FYHRYKEDIKLMKETGLDSFRFSI--------SW-------PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT- 163 (530)
Q Consensus 100 ~y~r~~eDi~l~k~lG~~~~R~si--------~W-------~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt- 163 (530)
-|.-..+-+.-+|+||++++-+.= .| -.|.|.- |. .+=+++||++|.++||++|+.
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~---G~-----~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY---GG-----PDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 355566778999999999886542 12 1222222 33 345889999999999999986
Q ss_pred -ecCC
Q 009642 164 -LFHW 167 (530)
Q Consensus 164 -L~H~ 167 (530)
..|.
T Consensus 181 V~NH~ 185 (542)
T TIGR02402 181 VYNHF 185 (542)
T ss_pred ccCCC
Confidence 4564
No 63
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=56.76 E-value=32 Score=34.04 Aligned_cols=80 Identities=13% Similarity=-0.031 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChH
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSE 184 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~ 184 (530)
+++++++++.|+..+|++++-+.+.-.... +.=....++...+.++.+++.|+++.+.+.+..-| ..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~ 143 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNL-NKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KT 143 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CC
Confidence 899999999999999999977632111100 11122345778899999999999999999665544 12
Q ss_pred HHHHHHHHHHHHH
Q 009642 185 IVKDFGDYADFCF 197 (530)
Q Consensus 185 ~~~~f~~ya~~~~ 197 (530)
..+.+.++++.+.
T Consensus 144 ~~~~l~~~~~~~~ 156 (265)
T cd03174 144 DPEYVLEVAKALE 156 (265)
T ss_pred CHHHHHHHHHHHH
Confidence 2455666666654
No 64
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=56.50 E-value=57 Score=38.07 Aligned_cols=94 Identities=12% Similarity=0.210 Sum_probs=59.2
Q ss_pred hhhch-HHHHHHHHHcCCCeEEecccCC---------------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009642 100 FYHRY-KEDIKLMKETGLDSFRFSISWP---------------RLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT 163 (530)
Q Consensus 100 ~y~r~-~eDi~l~k~lG~~~~R~si~W~---------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt 163 (530)
.|.-+ ++-+.-+|+||++++-+.=-.. .+.|.- |. .+-++++|++|.++||++|+.
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~---Gt-----p~dlk~LVd~aH~~GI~VilD 319 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS---GT-----PEDLKYLIDKAHSLGLRVLMD 319 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 34443 3448999999999987653211 222222 32 244889999999999999997
Q ss_pred ecC--CC-------------CchhHHhhhCC----C-------CChHHHHHHHHHHHHHHHHhc
Q 009642 164 LFH--WD-------------LPQVLEDEYGG----F-------LSSEIVKDFGDYADFCFKTFG 201 (530)
Q Consensus 164 L~H--~~-------------~P~wl~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~~ 201 (530)
+-+ +. .+.|+.....| | .++++++.+.+-++.-+++|+
T Consensus 320 vV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 320 VVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred eccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 544 21 12343321112 2 246788888888888888874
No 65
>PRK05402 glycogen branching enzyme; Provisional
Probab=55.66 E-value=50 Score=38.42 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=61.8
Q ss_pred hhchHHHH-HHHHHcCCCeEEecc--------cCC-------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE-
Q 009642 101 YHRYKEDI-KLMKETGLDSFRFSI--------SWP-------RLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT- 163 (530)
Q Consensus 101 y~r~~eDi-~l~k~lG~~~~R~si--------~W~-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt- 163 (530)
|.-..+.+ .-+|+||++++=+.= +|. .|.|.- |. .+=++++|++|.++||++|+.
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~---Gt-----~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF---GT-----PDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 33344553 678999999986543 121 233332 43 344889999999999999997
Q ss_pred -ecCCCC-----------chhHHh-----hhC-------CCCChHHHHHHHHHHHHHHHHhcCcccEEEe
Q 009642 164 -LFHWDL-----------PQVLED-----EYG-------GFLSSEIVKDFGDYADFCFKTFGDRVKQWVT 209 (530)
Q Consensus 164 -L~H~~~-----------P~wl~~-----~~g-------gw~~~~~~~~f~~ya~~~~~~~~d~V~~W~t 209 (530)
..|+.. |.+... .+. .+.++++.+.+.+-++.-+++|+ |+.|=.
T Consensus 336 V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~R~ 403 (726)
T PRK05402 336 VPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGLRV 403 (726)
T ss_pred CCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEEEE
Confidence 456521 111110 001 23467888899998888888886 444443
No 66
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=55.46 E-value=54 Score=35.17 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=39.9
Q ss_pred hchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 102 HRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 102 ~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
..|++||++++++||+.|=++|- -+ ...+. +....+++...+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig----~~-----d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG----SS-----DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc----cC-----CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 44899999999999999999886 11 22343 556688899999998888876
No 67
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=54.58 E-value=48 Score=33.51 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecC
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFH 166 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H 166 (530)
.+|++++.+.|++.+|+.++=|...-.... +.=-.+.++...+++..+++.|+++.+++-.
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~-~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASH-GKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 579999999999999999865544333211 2223567889999999999999999998843
No 68
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=54.39 E-value=7.4 Score=32.29 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=14.1
Q ss_pred HHHHhcC--cccEEEeccC-Cc
Q 009642 196 CFKTFGD--RVKQWVTMAE-PN 214 (530)
Q Consensus 196 ~~~~~~d--~V~~W~t~NE-p~ 214 (530)
++++||+ +|.+|-.+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677876 7999999999 66
No 69
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=54.15 E-value=43 Score=36.84 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=61.2
Q ss_pred eeeeeeccccccCCCCCCCCCCcccccccccCCCcccCCC--CCccccc--hhhchHHH-----HHHHHHcCCCeEEecc
Q 009642 53 IFGAGTSAYAAEGNVNIDGKSPSIWDTFANNHPEKIHDGS--NANVAID--FYHRYKED-----IKLMKETGLDSFRFSI 123 (530)
Q Consensus 53 lwG~atsa~QvEG~~~~dgr~~s~Wd~~~~~~~~~~~~~~--~~~~a~d--~y~r~~eD-----i~l~k~lG~~~~R~si 123 (530)
.||.|| |++--.+ -.++.|++...- ...+++-. .--.+.+ -|..|.+| ++++++.|++.+|..-
T Consensus 54 ~wGGAt--fd~~~rf----l~edpwerlr~~-r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd 126 (468)
T PRK12581 54 CWGGAT--FDACIRF----LNEDPWERLRTL-KKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFD 126 (468)
T ss_pred ecCCcc--hhhhhcc----cCCCHHHHHHHH-HHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcc
Confidence 565554 7765554 256778875431 11221100 0001112 37778888 9999999999999875
Q ss_pred cCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCch
Q 009642 124 SWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQ 171 (530)
Q Consensus 124 ~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~ 171 (530)
. .|. ++-....|+.+++.|....+++.+-+-|.
T Consensus 127 ~-------------lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 127 A-------------LND--PRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred c-------------CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Confidence 2 222 34466888899999999888888866663
No 70
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=54.15 E-value=85 Score=32.19 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=65.7
Q ss_pred chHHHHHHHHHcCCC--eEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCC---CCchhHHhh-
Q 009642 103 RYKEDIKLMKETGLD--SFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHW---DLPQVLEDE- 176 (530)
Q Consensus 103 r~~eDi~l~k~lG~~--~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---~~P~wl~~~- 176 (530)
..+|-++.+++.||. ++=+.+.|.+-.-.+. =.+|.+-.---..+|++|+++|+++++.+.-+ +.|..-+-+
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~--f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~ 102 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWCD--FEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAE 102 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCccee--eEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHH
Confidence 357888999999955 5667777874321111 12343333345799999999999988876533 233221110
Q ss_pred --------h------------CC---CCChHHHHHHHHHHHHHHHHhcCccc-EEEeccCC
Q 009642 177 --------Y------------GG---FLSSEIVKDFGDYADFCFKTFGDRVK-QWVTMAEP 213 (530)
Q Consensus 177 --------~------------gg---w~~~~~~~~f~~ya~~~~~~~~d~V~-~W~t~NEp 213 (530)
. ++ +.||++.+.|.+..+.+.+ .| |+ +|+=+||+
T Consensus 103 ~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 103 KGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred CCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 0 11 5688999999888876554 44 44 45557886
No 71
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=53.44 E-value=93 Score=31.76 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCc
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLP 170 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P 170 (530)
+.|++++++.|++..++.++=|...-.... +.--.+.++-..++++.+++.|+++.+++.+|.-|
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~-~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~ 141 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQL-RKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG 141 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 569999999999999999966655443211 33346778889999999999999999999987744
No 72
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=52.98 E-value=40 Score=35.77 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=48.4
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecC
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFH 166 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H 166 (530)
.++|++.+.+.|++.+|+.++-|.+.-...+ +.-..+.++-..+.+..+++.|+++.+++-.
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 4799999999999999999987766543211 3234556788889999999999999888743
No 73
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=52.76 E-value=46 Score=34.72 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=65.0
Q ss_pred hhchHHHHHHHHHcCCCeEEecc--cCCcccc-CCC----CCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCC-----
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSI--SWPRLLP-KGK----ISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWD----- 168 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si--~W~ri~P-~~~----~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~----- 168 (530)
-.+.++=++++++.|+|++=+.+ ++..|-= ... ..|.. ...+.-...+++.|+++||.||--+..|-
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 34678899999999999999999 7777732 211 01221 11134478999999999999998666552
Q ss_pred --CchhHHhh----------hCCCCCh---HHHHHHHHHHHHHHHH
Q 009642 169 --LPQVLEDE----------YGGFLSS---EIVKDFGDYADFCFKT 199 (530)
Q Consensus 169 --~P~wl~~~----------~ggw~~~---~~~~~f~~ya~~~~~~ 199 (530)
.|.|-..+ .-.|.|| ++.+.-.+-|+.+++.
T Consensus 91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 34443311 1138876 6777777777777744
No 74
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=52.51 E-value=36 Score=34.54 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=39.0
Q ss_pred ccccchhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 95 NVAIDFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 95 ~~a~d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
|-+|..=..|..|+++++.-+. ..|. . | -|- .-..++...+.+.|++.++.+
T Consensus 56 dGtCKSa~~~~sDLe~l~~~t~-~IR~-------Y------~-sDC---n~le~v~pAa~~~g~kv~lGi 107 (305)
T COG5309 56 DGTCKSADQVASDLELLASYTH-SIRT-------Y------G-SDC---NTLENVLPAAEASGFKVFLGI 107 (305)
T ss_pred CCCCcCHHHHHhHHHHhccCCc-eEEE-------e------e-ccc---hhhhhhHHHHHhcCceEEEEE
Confidence 3478888889999999999887 4443 1 2 222 125589999999999999988
No 75
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=52.24 E-value=62 Score=34.15 Aligned_cols=94 Identities=14% Similarity=0.280 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCeEEecc-cCC-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCC
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWP-RLLPKGKISGG-VNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFL 181 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~ 181 (530)
+|.+++|+++|++.+.+++ +=+ ++...- |+ .+ .+-+.+.|+.+++.||..+-.-.=+++|.
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l---~R~~~---~~~~~~ai~~l~~~g~~~v~~dli~GlPg---------- 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYL---GRIHT---FEEFLENYKLARKLGFNNINVDLMFGLPN---------- 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHc---CCCCC---HHHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 5889999999999666665 222 222211 22 23 35577889999999997443333456663
Q ss_pred ChHHHHHHHHHHHHHHHHhcCcccEEEeccCCccc
Q 009642 182 SSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSI 216 (530)
Q Consensus 182 ~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~ 216 (530)
++.+.|.+-.+.+.+.=.+.|..+...-+|+..
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 234555555666554333566665555577644
No 76
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=52.04 E-value=41 Score=34.49 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=56.4
Q ss_pred HHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCC----chhHHhhhCCCCCh
Q 009642 108 IKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDL----PQVLEDEYGGFLSS 183 (530)
Q Consensus 108 i~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~----P~wl~~~~ggw~~~ 183 (530)
.+.+++-.-+.-.++..|-.|-|++...+.. ..++++.++++|+++++++..++- +.-+.. --.++
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-------~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~ 85 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADGTLTGLP-------DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNP 85 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-------CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCH
Confidence 5666666666666888999998877433333 358999999999999999976641 111111 12356
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 009642 184 EIVKDFGDYADFCFKTFG 201 (530)
Q Consensus 184 ~~~~~f~~ya~~~~~~~~ 201 (530)
+.++.|++=+...+++++
T Consensus 86 ~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 86 EARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 777778777777777775
No 77
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=50.23 E-value=55 Score=33.52 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=61.9
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecC-CCCchhHHhhhCCCCC
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFH-WDLPQVLEDEYGGFLS 182 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H-~~~P~wl~~~~ggw~~ 182 (530)
-.+|+++..+.|++.+++.++=|...-.... +.=..+.++-..+.|+..+++|+++..++.. |..|. .|..+
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~-~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~~ 153 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNI-NCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEVP 153 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCCC
Confidence 4899999999999999999865544322111 3334567888999999999999999887764 55552 34333
Q ss_pred hHHHHHHHHHHHHHHHH
Q 009642 183 SEIVKDFGDYADFCFKT 199 (530)
Q Consensus 183 ~~~~~~f~~ya~~~~~~ 199 (530)
.+.+.++++.+.+.
T Consensus 154 ---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 154 ---PEAVADVAERLFAL 167 (287)
T ss_pred ---HHHHHHHHHHHHHc
Confidence 56777777777643
No 78
>PRK12568 glycogen branching enzyme; Provisional
Probab=49.85 E-value=68 Score=37.33 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=58.8
Q ss_pred hhchHHH-HHHHHHcCCCeEEec--------ccCC-------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 101 YHRYKED-IKLMKETGLDSFRFS--------ISWP-------RLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 101 y~r~~eD-i~l~k~lG~~~~R~s--------i~W~-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
|.-..+. |.-+|+||++++=+. -+|. .+.|.- |. .+-++.+|++|.++||++|+.+
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~---G~-----~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH---GS-----PDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc---CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 4444444 588999999987543 2352 222222 43 3458899999999999999963
Q ss_pred --cCCCC----------c-hhHHh--hhC---C-------CCChHHHHHHHHHHHHHHHHhc
Q 009642 165 --FHWDL----------P-QVLED--EYG---G-------FLSSEIVKDFGDYADFCFKTFG 201 (530)
Q Consensus 165 --~H~~~----------P-~wl~~--~~g---g-------w~~~~~~~~f~~ya~~~~~~~~ 201 (530)
.|+.- + .+.+. +.| . +.++++.+.+.+=++.-+++|+
T Consensus 340 V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 340 VSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 44321 1 11100 001 2 3467888899999999998886
No 79
>PLN00196 alpha-amylase; Provisional
Probab=49.70 E-value=36 Score=36.99 Aligned_cols=68 Identities=10% Similarity=0.187 Sum_probs=44.4
Q ss_pred hhhchHHHHHHHHHcCCCeEEecccCCccccCCCCC---CCCC---hHHHHHHHHHHHHHHHCCCeEEEE--ecCC
Q 009642 100 FYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKIS---GGVN---PLGVQFYNNLIDELIANGIKPFVT--LFHW 167 (530)
Q Consensus 100 ~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~---g~~n---~~gl~~y~~~i~~l~~~GI~p~vt--L~H~ 167 (530)
+|....+.+.-+|+||+++.=++=......+.|--. -.+| .-..+=++++|++++++||++|+. +.|-
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 466678899999999999988875443322221100 0011 011234889999999999999985 6663
No 80
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.79 E-value=87 Score=32.76 Aligned_cols=93 Identities=23% Similarity=0.262 Sum_probs=66.6
Q ss_pred HHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHH
Q 009642 106 EDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEI 185 (530)
Q Consensus 106 eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~ 185 (530)
-+.+.+|++|.++..|=+=|. |++. -.+|..-.++.+++.++|++++|-=++=+..+|.+.- + =.+++.
T Consensus 111 ws~~rike~GadavK~Llyy~---pD~~--~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~--d----~~~~ey 179 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYD---VDGD--EEINDQKQAYIERIGSECTAEDIPFFLELLTYDERIS--D----NNSAAY 179 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEEC---CCCC--HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCccc--c----cccHHH
Confidence 467889999999999988877 6643 5588888999999999999999999998888765531 1 123343
Q ss_pred HHHHHHHHHHHHHHhcC---cccEEEe
Q 009642 186 VKDFGDYADFCFKTFGD---RVKQWVT 209 (530)
Q Consensus 186 ~~~f~~ya~~~~~~~~d---~V~~W~t 209 (530)
.+..-+.+-..++.|++ .|+.|-+
T Consensus 180 ak~kP~~V~~amkefs~~~~gvDVlKv 206 (329)
T PRK04161 180 AKLKPHKVNGAMKVFSDKRFGVDVLKV 206 (329)
T ss_pred HhhChHHHHHHHHHhccCCCCCcEEEE
Confidence 33333445556677765 3555544
No 81
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=47.48 E-value=62 Score=34.21 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=62.9
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecC-CCCchhHHhhhCCCCC
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFH-WDLPQVLEDEYGGFLS 182 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H-~~~P~wl~~~~ggw~~ 182 (530)
-.+|++++.+.|+..+.+.++=|...-.... +.=-.+.++-+.++++.++++|+++.+++.. |..|. .+..+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~~ 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPVP 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCCC
Confidence 4799999999999999999876666544321 3445778899999999999999999888765 55552 33333
Q ss_pred hHHHHHHHHHHHHHHH
Q 009642 183 SEIVKDFGDYADFCFK 198 (530)
Q Consensus 183 ~~~~~~f~~ya~~~~~ 198 (530)
++.+.++++.+.+
T Consensus 196 ---~~~l~~~~~~~~~ 208 (347)
T PLN02746 196 ---PSKVAYVAKELYD 208 (347)
T ss_pred ---HHHHHHHHHHHHH
Confidence 5667777777654
No 82
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=47.39 E-value=62 Score=36.74 Aligned_cols=93 Identities=16% Similarity=0.065 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCc----hhHHhh----
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLP----QVLEDE---- 176 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P----~wl~~~---- 176 (530)
++|+++.++.|++.+|+..+.+.+ +-....|+.++++|....+++.+-+-| ..+.+.
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~---------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l 164 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDP---------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQL 164 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcH---------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHH
Confidence 444999999999999999754433 234456666677776655555432233 222221
Q ss_pred ------------hCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCccc
Q 009642 177 ------------YGGFLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSI 216 (530)
Q Consensus 177 ------------~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~ 216 (530)
-.|-..|..+ .+.++.+.+++ +..-..++-|-..+-
T Consensus 165 ~~~Gad~i~i~Dt~G~l~P~~~---~~lv~~lk~~~-~~pi~~H~Hnt~GlA 212 (593)
T PRK14040 165 EDMGVDSLCIKDMAGLLKPYAA---YELVSRIKKRV-DVPLHLHCHATTGLS 212 (593)
T ss_pred HHcCCCEEEECCCCCCcCHHHH---HHHHHHHHHhc-CCeEEEEECCCCchH
Confidence 2355555443 33444444555 334466777776643
No 83
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=47.27 E-value=53 Score=34.77 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChH
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSE 184 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~ 184 (530)
++||+.+.+.|++.+|+.++-|.+.-...+ +.=..+.++-..+.|+.++++|+++.++... .+..+
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~~-- 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKL-RKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRAD-- 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCCC--
Confidence 799999999999999999987765433211 2224567888999999999999998776432 33333
Q ss_pred HHHHHHHHHHHHHH
Q 009642 185 IVKDFGDYADFCFK 198 (530)
Q Consensus 185 ~~~~f~~ya~~~~~ 198 (530)
.+.+.++++.+.+
T Consensus 141 -~~~l~~~~~~~~~ 153 (365)
T TIGR02660 141 -PDFLVELAEVAAE 153 (365)
T ss_pred -HHHHHHHHHHHHH
Confidence 4556666666543
No 84
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=47.25 E-value=1.1e+02 Score=34.73 Aligned_cols=93 Identities=13% Similarity=0.170 Sum_probs=60.1
Q ss_pred hhchHHHH-HHHHHcCCCeEEe-cccCC--------------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 101 YHRYKEDI-KLMKETGLDSFRF-SISWP--------------RLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 101 y~r~~eDi-~l~k~lG~~~~R~-si~W~--------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
|.-..+.+ .-+|+||++++=+ .|... .+.|.- |. .+=++++|++|.++||++|+.+
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~---Gt-----~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF---GT-----PDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc---CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 44445664 8899999999877 33221 122221 32 2448899999999999999964
Q ss_pred --cCCC-----------CchhHHhh-----hCC-------CCChHHHHHHHHHHHHHHHHhc
Q 009642 165 --FHWD-----------LPQVLEDE-----YGG-------FLSSEIVKDFGDYADFCFKTFG 201 (530)
Q Consensus 165 --~H~~-----------~P~wl~~~-----~gg-------w~~~~~~~~f~~ya~~~~~~~~ 201 (530)
.|.. .|.+.... ... +.++++.+.+.+-++.-+++|+
T Consensus 227 V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 227 VPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 4542 12221110 011 2457888999999999999986
No 85
>PRK14706 glycogen branching enzyme; Provisional
Probab=47.22 E-value=80 Score=36.24 Aligned_cols=58 Identities=22% Similarity=0.238 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHCCCeEEEE--ecCC----------C-Cchh-HHh-hhC---CC-------CChHHHHHHHHHHHHHHH
Q 009642 144 QFYNNLIDELIANGIKPFVT--LFHW----------D-LPQV-LED-EYG---GF-------LSSEIVKDFGDYADFCFK 198 (530)
Q Consensus 144 ~~y~~~i~~l~~~GI~p~vt--L~H~----------~-~P~w-l~~-~~g---gw-------~~~~~~~~f~~ya~~~~~ 198 (530)
+=++.+|++|.++||++|+. ..|+ | .|.+ ..+ +.| .| .++++.+.+.+=++.-++
T Consensus 217 ~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~ 296 (639)
T PRK14706 217 EDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQ 296 (639)
T ss_pred HHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 44889999999999999986 3443 2 2222 111 001 12 257888888999999999
Q ss_pred Hhc
Q 009642 199 TFG 201 (530)
Q Consensus 199 ~~~ 201 (530)
+|+
T Consensus 297 e~~ 299 (639)
T PRK14706 297 DFH 299 (639)
T ss_pred HhC
Confidence 885
No 86
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=47.17 E-value=82 Score=32.66 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=70.9
Q ss_pred HHHHHHHHHcCCC-eEEecc-cCC-cccc-C-CCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCC
Q 009642 105 KEDIKLMKETGLD-SFRFSI-SWP-RLLP-K-GKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGG 179 (530)
Q Consensus 105 ~eDi~l~k~lG~~-~~R~si-~W~-ri~P-~-~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~gg 179 (530)
+|.+++|+++|++ .+-+++ +-+ ++.- . .. | .+. +-+.+.++.++++||.+.+.+. +.+|..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inK--g-~t~---~~~~~ai~~~~~~Gi~v~~~~i-~G~P~~------- 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINK--G-STF---EDFIRAAELARKYGAGVKAYLL-FKPPFL------- 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCC--C-CCH---HHHHHHHHHHHHcCCcEEEEEE-ecCCCC-------
Confidence 7999999999998 577777 322 2221 1 10 2 333 5678999999999999666553 345521
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcccccccccccccCC
Q 009642 180 FLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSISIGGYAIGVYAP 228 (530)
Q Consensus 180 w~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~~~~~y~~G~~~P 228 (530)
.-.++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 183 -se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 -SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred -ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 112667777777777765 45888887777777765444466677655
No 87
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=46.96 E-value=31 Score=38.67 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=40.8
Q ss_pred chhhchHHHHHHHHHcCCCeEEecccC--------------CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 99 DFYHRYKEDIKLMKETGLDSFRFSISW--------------PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 99 d~y~r~~eDi~l~k~lG~~~~R~si~W--------------~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
.-+.-..+-++-+++||++++=++=-. -+|.|.- | ..+-++++|++++++||++|+.+
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~---G-----t~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF---G-----TMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 345556778889999999998664322 2222322 2 23558899999999999999964
No 88
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=46.87 E-value=91 Score=32.54 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=65.1
Q ss_pred HHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHH
Q 009642 107 DIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIV 186 (530)
Q Consensus 107 Di~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~ 186 (530)
..+.+|++|.++..|=+=|. |++. ..+|..-.++.+++.++|++++|-=++=+..+|.+.- +. .+.++.
T Consensus 110 S~~rike~GadavK~Llyy~---pD~~--~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~--d~----~~~~ya 178 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYD---VDEP--DEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIA--DN----GSVEYA 178 (324)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCC--HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCccc--cc----ccHHHH
Confidence 47889999999999998887 6653 4589989999999999999999998888877765531 11 122333
Q ss_pred HHHHHHHHHHHHHhcC---cccEEEe
Q 009642 187 KDFGDYADFCFKTFGD---RVKQWVT 209 (530)
Q Consensus 187 ~~f~~ya~~~~~~~~d---~V~~W~t 209 (530)
+..-+.+-..++.|++ .|+.|-+
T Consensus 179 k~kP~~V~~a~kefs~~~~gvDVlKv 204 (324)
T PRK12399 179 KVKPHKVNEAMKVFSKPRFGVDVLKV 204 (324)
T ss_pred hhChHHHHHHHHHhccCCCCCcEEEE
Confidence 3334444456677765 3555544
No 89
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=46.59 E-value=67 Score=35.37 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=42.0
Q ss_pred hhhchHHH-----HHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCc
Q 009642 100 FYHRYKED-----IKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLP 170 (530)
Q Consensus 100 ~y~r~~eD-----i~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P 170 (530)
.|..|.+| ++++.+.|++.+|+.++-+.+ +-....++..++.|+....++.+-.-|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI---------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH---------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 35667888 999999999999999865532 335677788888898888777654445
No 90
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=45.98 E-value=1.7e+02 Score=29.66 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Q 009642 106 EDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHW 167 (530)
Q Consensus 106 eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~ 167 (530)
.+++++++.|++.+|+.++=|...-.... |.-..+.++...+.++.+++.|+++.++..+|
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEAL-GTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 78999999999999998865544322110 32345678889999999999999999976665
No 91
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=45.48 E-value=44 Score=36.76 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=44.1
Q ss_pred chhhchHHHHHHHHHcCCCeEEecccCCcc--------ccCCCC-------CCCCCh--HHHHHHHHHHHHHHHCCCeEE
Q 009642 99 DFYHRYKEDIKLMKETGLDSFRFSISWPRL--------LPKGKI-------SGGVNP--LGVQFYNNLIDELIANGIKPF 161 (530)
Q Consensus 99 d~y~r~~eDi~l~k~lG~~~~R~si~W~ri--------~P~~~~-------~g~~n~--~gl~~y~~~i~~l~~~GI~p~ 161 (530)
+.|.-..+-++-+++||+++.=++=...-. -|..-. .|.+|. =..+=+++||++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 456667788899999999998766533221 111100 001111 123458899999999999999
Q ss_pred EE--ecCCC
Q 009642 162 VT--LFHWD 168 (530)
Q Consensus 162 vt--L~H~~ 168 (530)
+. +.|-.
T Consensus 99 ~D~V~NH~~ 107 (479)
T PRK09441 99 ADVVLNHKA 107 (479)
T ss_pred EEECccccc
Confidence 86 56643
No 92
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.39 E-value=85 Score=33.10 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=44.9
Q ss_pred HHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 009642 108 IKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWD 168 (530)
Q Consensus 108 i~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~ 168 (530)
++.++++|.+++-+-+-|. |+.. ..+|..-+++..++.++|.+.||.-++=+.-++
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~--~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~ 167 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDED--DAINDRKHAFVERVGAECRANDIPFFLEPLTYD 167 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcc--hHHHHHHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 5668999999999999888 5531 345788889999999999999999888543333
No 93
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=45.30 E-value=67 Score=34.24 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
++|++.+.+.|++.++++++-|.+.-...+ +.--.+.++-..+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999977776433211 33346678889999999999999988874
No 94
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=45.27 E-value=35 Score=38.34 Aligned_cols=60 Identities=13% Similarity=0.323 Sum_probs=42.3
Q ss_pred chhhchHHHHHHHHHcCCCeEEecccC--------------CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE-
Q 009642 99 DFYHRYKEDIKLMKETGLDSFRFSISW--------------PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT- 163 (530)
Q Consensus 99 d~y~r~~eDi~l~k~lG~~~~R~si~W--------------~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt- 163 (530)
.-+.-..+.++-+++||++++=++=-+ -+|.|.- | ..+-+++||+++.++||++|+.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~---G-----t~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTY---G-----TLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCccc---C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 445556788999999999998664322 1222222 2 2355889999999999999986
Q ss_pred -ecC
Q 009642 164 -LFH 166 (530)
Q Consensus 164 -L~H 166 (530)
+.|
T Consensus 102 V~NH 105 (551)
T PRK10933 102 VFNH 105 (551)
T ss_pred CCCC
Confidence 455
No 95
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.18 E-value=1.4e+02 Score=29.92 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecC
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFH 166 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H 166 (530)
.+|++.+++.|++.+|+.++.+.+. -..+.++.+++.|+++.+++..
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~---------------~~~~~i~~ak~~G~~v~~~~~~ 134 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD---------------VSEQHIGAARKLGMDVVGFLMM 134 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH---------------HHHHHHHHHHHCCCeEEEEEEe
Confidence 6999999999999999987665431 2457888999999999888843
No 96
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.85 E-value=84 Score=31.76 Aligned_cols=65 Identities=11% Similarity=0.074 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChH
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSE 184 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~ 184 (530)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+..- -
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------------~~~~~~~~i~~ak~~G~~v~~~~~~a~~--------------~ 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------------EFDEALPLIKAIKEKGYEVFFNLMAISG--------------Y 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------------cHHHHHHHHHHHHHCCCeEEEEEEeecC--------------C
Confidence 5899999999999999987332 2466789999999999999999876321 1
Q ss_pred HHHHHHHHHHHHHH
Q 009642 185 IVKDFGDYADFCFK 198 (530)
Q Consensus 185 ~~~~f~~ya~~~~~ 198 (530)
..+.+.++++.+.+
T Consensus 136 ~~~~~~~~~~~~~~ 149 (266)
T cd07944 136 SDEELLELLELVNE 149 (266)
T ss_pred CHHHHHHHHHHHHh
Confidence 24667777777654
No 97
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=43.63 E-value=1.5e+02 Score=31.24 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=64.3
Q ss_pred CCccccchhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchh
Q 009642 93 NANVAIDFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQV 172 (530)
Q Consensus 93 ~~~~a~d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~w 172 (530)
.+-+|.=||+ |+.-+. ..+.|+..+|++ + |.+- .-+..+.+++.++++|+-.=+..+|-.++.-
T Consensus 73 iPlVADIHFd-~~lAl~-a~~~g~dkiRIN---------P---GNig--~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~ 136 (346)
T TIGR00612 73 VPLVADIHFD-YRLAAL-AMAKGVAKVRIN---------P---GNIG--FRERVRDVVEKARDHGKAMRIGVNHGSLERR 136 (346)
T ss_pred CCEEEeeCCC-cHHHHH-HHHhccCeEEEC---------C---CCCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCcHH
Confidence 3445666876 444333 346799999874 2 4332 2477899999999999999999999999999
Q ss_pred HHhhhCCCCChHHHHHHHHHHHHH
Q 009642 173 LEDEYGGFLSSEIVKDFGDYADFC 196 (530)
Q Consensus 173 l~~~~ggw~~~~~~~~f~~ya~~~ 196 (530)
+.++||+-.....++.-.++++.+
T Consensus 137 ~~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 137 LLEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999987645556666666666654
No 98
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=43.07 E-value=1.5e+02 Score=31.85 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=59.4
Q ss_pred cccchhhchHHHHHHHHHc-CCCeEEecc--cCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEecCCCCch
Q 009642 96 VAIDFYHRYKEDIKLMKET-GLDSFRFSI--SWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPF-VTLFHWDLPQ 171 (530)
Q Consensus 96 ~a~d~y~r~~eDi~l~k~l-G~~~~R~si--~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~~~P~ 171 (530)
.+.+-.++ .+|++.++.+ ++. .++++ .| + .. ..+.++.+.++++||+.. ++...|..|.
T Consensus 35 ~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~------d---~~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~ 97 (378)
T TIGR02635 35 AARNVFEK-IEDAALVHRLTGIC-PTVALHIPW------D---RV------EDYEELARYAEELGLKIGAINPNLFQDDD 97 (378)
T ss_pred CCCCHHHH-HHHHHHHHhhcCCC-CceeeccCC------c---cc------cCHHHHHHHHHHcCCceeeeeCCccCCcc
Confidence 44444444 6788888887 555 66666 44 2 11 226678888999999998 7888887776
Q ss_pred hHHhhhCCCCCh--HHHHHHHHHHHHHH---HHhcC
Q 009642 172 VLEDEYGGFLSS--EIVKDFGDYADFCF---KTFGD 202 (530)
Q Consensus 172 wl~~~~ggw~~~--~~~~~f~~ya~~~~---~~~~d 202 (530)
+ ++|.+.|+ ++++.-.++++.|. +++|.
T Consensus 98 ~---~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa 130 (378)
T TIGR02635 98 Y---KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS 130 (378)
T ss_pred c---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5 35788876 66666677766655 56665
No 99
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=42.61 E-value=90 Score=31.72 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecC-CCCchhHHhhhCCCCCh
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFH-WDLPQVLEDEYGGFLSS 183 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H-~~~P~wl~~~~ggw~~~ 183 (530)
++|++.+.+.|++.+++.++=|...-.... +.--.+.++...+.++.++++|+++.+++.. |+.|. ++-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~-- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNI-NCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV-- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC--
Confidence 689999999999999999866654322211 3333667888999999999999999988874 66662 3333
Q ss_pred HHHHHHHHHHHHHHH
Q 009642 184 EIVKDFGDYADFCFK 198 (530)
Q Consensus 184 ~~~~~f~~ya~~~~~ 198 (530)
..+.+.++++.+.+
T Consensus 147 -~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 -PPERVAEVAERLLD 160 (274)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35667777777654
No 100
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=42.22 E-value=2.1e+02 Score=30.80 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=61.5
Q ss_pred hchHHHHHHHHHcCCCeEEecccCCc-----------cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEec-----
Q 009642 102 HRYKEDIKLMKETGLDSFRFSISWPR-----------LLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLF----- 165 (530)
Q Consensus 102 ~r~~eDi~l~k~lG~~~~R~si~W~r-----------i~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~----- 165 (530)
....+-++.++++|++.+=+.--|-. .+|+. .++ ..| ...+++.+++.||++=+=+-
T Consensus 58 ~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~---~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 58 EKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP---KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT---TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred HHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh---hhh-CCc---HHHHHHHHHHCCCeEEEEecccccc
Confidence 34567778899999999988889953 44554 222 124 55999999999999866330
Q ss_pred -----CCCCchhHHhhhC-----C-------CCChHHHHHHHHHHHHHHHHhc
Q 009642 166 -----HWDLPQVLEDEYG-----G-------FLSSEIVKDFGDYADFCFKTFG 201 (530)
Q Consensus 166 -----H~~~P~wl~~~~g-----g-------w~~~~~~~~f~~ya~~~~~~~~ 201 (530)
.-.+|.|+....+ | ..+|++.++..+-...+++.+|
T Consensus 131 ~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp SSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 1257888754211 1 3467888888888888888876
No 101
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.09 E-value=1.7e+02 Score=30.35 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=62.9
Q ss_pred hHHHHHHHHHcCCC--eEEecccCCccccCCCCCC--CCChHHHHHHHHHHHHHHHCCCeEEEEecCC---CCchhHHhh
Q 009642 104 YKEDIKLMKETGLD--SFRFSISWPRLLPKGKISG--GVNPLGVQFYNNLIDELIANGIKPFVTLFHW---DLPQVLEDE 176 (530)
Q Consensus 104 ~~eDi~l~k~lG~~--~~R~si~W~ri~P~~~~~g--~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---~~P~wl~~~ 176 (530)
..+-++-+++.||. ++=+++.|.........-| .+|.+-..--.++|+.|+++|++.++.+.-+ +.|..-+-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 44556666666665 4444555643222110001 1222222224589999999999999887654 344431111
Q ss_pred h----------------------C---CCCChHHHHHHHHHHHHHHHHhcCccc-EEEeccCCccc
Q 009642 177 Y----------------------G---GFLSSEIVKDFGDYADFCFKTFGDRVK-QWVTMAEPNSI 216 (530)
Q Consensus 177 ~----------------------g---gw~~~~~~~~f~~ya~~~~~~~~d~V~-~W~t~NEp~~~ 216 (530)
. + -+.||+.++.|.+..+.+ ...| |+ +|+=+|||..+
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G--vdg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG--VTGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC--ccEEEecCCCcccc
Confidence 0 1 255899999998887765 3333 43 58889999754
No 102
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.92 E-value=1.5e+02 Score=30.52 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=70.3
Q ss_pred chHHHHHHHHHcCCC--eEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCC---chhHH---
Q 009642 103 RYKEDIKLMKETGLD--SFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDL---PQVLE--- 174 (530)
Q Consensus 103 r~~eDi~l~k~lG~~--~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~---P~wl~--- 174 (530)
...+-++.+++.||. ++=+.+.|..-. ++ =.+|.+-..--..++++|+++|+++++.+.=+-. +..-+
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~--f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~ 106 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETCY--GD--FDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVE 106 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCccccC--Cc--cccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhh
Confidence 356777888999965 666777785422 11 1234333333679999999999999886654321 22111
Q ss_pred ------hhhC-------------C---CCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009642 175 ------DEYG-------------G---FLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPN 214 (530)
Q Consensus 175 ------~~~g-------------g---w~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~ 214 (530)
++.| + +.||+.++.|.+..+.++...|= =-+|+=+|||.
T Consensus 107 ~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 107 KGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred CCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 1111 1 66899999999999988877763 34677899996
No 103
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=41.19 E-value=81 Score=37.43 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=43.8
Q ss_pred hhchHHHHHHHHHcCCCeEEecc---------------cCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE--
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSI---------------SWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT-- 163 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si---------------~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt-- 163 (530)
+....+-+.-+++|||++.=+|= .+.+|.|.- |. .+=+++++++++++||++|+.
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l---Gt-----~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL---GG-----EEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC---CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45578888999999999875442 455566654 42 245889999999999999986
Q ss_pred ecCC
Q 009642 164 LFHW 167 (530)
Q Consensus 164 L~H~ 167 (530)
++|-
T Consensus 91 ~NH~ 94 (879)
T PRK14511 91 PNHM 94 (879)
T ss_pred cccc
Confidence 5564
No 104
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=40.51 E-value=1.1e+02 Score=33.53 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCc
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLP 170 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P 170 (530)
.++||+.+.+.|++.+|+.++-+.+. -....|+.++++|+++.+++..-+-|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~---------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR---------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH---------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 46778999999999999998655431 15568899999999988887775556
No 105
>PLN02389 biotin synthase
Probab=40.44 E-value=82 Score=33.69 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=42.8
Q ss_pred chHHHHHHHHHcCCCeEEecccCCc-cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 103 RYKEDIKLMKETGLDSFRFSISWPR-LLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si~W~r-i~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
.-+|.++.||++|++.|-.+++=++ ++|.-. ..-++ +.+-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~--~~~s~---e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI--TTRSY---DDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC--CCCCH---HHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999885233 555531 22243 668899999999999987664
No 106
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=40.05 E-value=1.3e+02 Score=31.71 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCeEEecc-cCC-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCC
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWP-RLLPKGKISGG-VNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFL 181 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~ 181 (530)
++.++.|+++|+|.+.+++ +=+ ++...- |. .+. +-+.+.|+.+++.|+.++-.-.-+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~~~~---~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQHSA---KNIAPAIETALKSGIENISLDLMYGLPL---------- 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh---CCCCCH---HHHHHHHHHHHHcCCCeEEEeccCCCCC----------
Confidence 6899999999999777777 443 333222 22 233 5577899999999998654433456664
Q ss_pred ChHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009642 182 SSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPN 214 (530)
Q Consensus 182 ~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~ 214 (530)
++.+.+.+-.+.+.+.=.+.+......=||+
T Consensus 164 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 --QTLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred --CCHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 2334455555554442224444444333443
No 107
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=40.02 E-value=72 Score=33.48 Aligned_cols=76 Identities=17% Similarity=0.405 Sum_probs=44.6
Q ss_pred hhchHHHHHHHHHcCCCeEEecc----cCCccccCCC--------------------------CCCCCC----hHHHHHH
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSI----SWPRLLPKGK--------------------------ISGGVN----PLGVQFY 146 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si----~W~ri~P~~~--------------------------~~g~~n----~~gl~~y 146 (530)
|+||++.|+-|+--|||.-=.-+ -|-|++-+-. -.|... .+-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 68999999999999999643222 2444433320 012222 1123445
Q ss_pred HHHHHHHHHCCCeEEEEecCCCCchhHHhh
Q 009642 147 NNLIDELIANGIKPFVTLFHWDLPQVLEDE 176 (530)
Q Consensus 147 ~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~ 176 (530)
+++++++++.||+|++--+---.|..|.++
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~ 127 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRK 127 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHH
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhc
Confidence 789999999999999998888899988876
No 108
>PLN02784 alpha-amylase
Probab=39.54 E-value=82 Score=37.24 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=46.3
Q ss_pred chhhchHHHHHHHHHcCCCeEEecccCCccccCCCCC---CCCCh--HHHHHHHHHHHHHHHCCCeEEEE--ecC
Q 009642 99 DFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKIS---GGVNP--LGVQFYNNLIDELIANGIKPFVT--LFH 166 (530)
Q Consensus 99 d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~---g~~n~--~gl~~y~~~i~~l~~~GI~p~vt--L~H 166 (530)
.+|....+.+.-+++||++++=++=.-.-..+.|-.. -.+|. -..+=++.+|++|+++||++|+. ++|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 5788999999999999999987765433332222100 00111 01245889999999999999986 566
No 109
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=39.53 E-value=1.2e+02 Score=32.10 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=57.0
Q ss_pred hHHHHHHHHHcCCCeEEecc-cC-CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCC
Q 009642 104 YKEDIKLMKETGLDSFRFSI-SW-PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFL 181 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si-~W-~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~ 181 (530)
=+|.+++|+++|++.+.+++ += .++...-. ...+. +-..+.++.+++.|+..+-.-.=+++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~--r~~~~---~~~~~~i~~l~~~g~~~v~~dli~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKIG--RTHNE---EDVYEAIANAKKAGFDNISIDLIYALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC--CCCCH---HHHHHHHHHHHHcCCCcEEEeeecCCCC---------C
Confidence 36999999999999888887 32 34443321 22343 5577899999999997543333456664 2
Q ss_pred ChHHHHHHHHHHHHHHHHhcCcccEEEeccCCccc
Q 009642 182 SSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSI 216 (530)
Q Consensus 182 ~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~ 216 (530)
+ .+.|.+=.+.+.+.=.+.|......-+|+..
T Consensus 165 t---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 165 T---IEDFKESLAKALALDIPHYSAYSLILEPKTV 196 (377)
T ss_pred C---HHHHHHHHHHHHccCCCEEeeeceeecCCCh
Confidence 2 3444444444433223445455444566644
No 110
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=39.04 E-value=96 Score=30.52 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=43.3
Q ss_pred chhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE-EecCCCCc
Q 009642 99 DFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFV-TLFHWDLP 170 (530)
Q Consensus 99 d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~v-tL~H~~~P 170 (530)
++-+++++=|+++++||.+..++...+ . |...-........++..+++.+.+.+.||...+ +++|++.|
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGK--R-PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 344667788999999999998864432 1 111000112233456678888888999998777 34555555
No 111
>PRK14705 glycogen branching enzyme; Provisional
Probab=38.93 E-value=1.7e+02 Score=36.30 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=56.9
Q ss_pred HHH-HHHHHHcCCCeEEec--------ccCC-------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE--ecC
Q 009642 105 KED-IKLMKETGLDSFRFS--------ISWP-------RLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT--LFH 166 (530)
Q Consensus 105 ~eD-i~l~k~lG~~~~R~s--------i~W~-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt--L~H 166 (530)
.+. |.-+|+||++++=+. -+|. .+.|.- |. .+=++.+|++|.++||.+|+. ..|
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ry---Gt-----~~dfk~lVd~~H~~GI~VILD~V~nH 839 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRF---GH-----PDEFRFLVDSLHQAGIGVLLDWVPAH 839 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCccc---CC-----HHHHHHHHHHHHHCCCEEEEEecccc
Confidence 344 588999999998543 1342 112221 33 344889999999999999986 445
Q ss_pred CCC-----------chhHHhh--hC---C-------CCChHHHHHHHHHHHHHHHHhc
Q 009642 167 WDL-----------PQVLEDE--YG---G-------FLSSEIVKDFGDYADFCFKTFG 201 (530)
Q Consensus 167 ~~~-----------P~wl~~~--~g---g-------w~~~~~~~~f~~ya~~~~~~~~ 201 (530)
+.. |.+.+.. .| . +.++++.+.+.+=+.+-+++|+
T Consensus 840 ~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 840 FPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 421 1111110 00 1 3467888899999999999986
No 112
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=38.33 E-value=1.3e+02 Score=31.50 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe--cCCCCchhH
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL--FHWDLPQVL 173 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL--~H~~~P~wl 173 (530)
.+|++.+.+.|++.+|+....+.. +--.+.|+.+++.|++..+.+ .|...|..+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~---------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l 145 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA---------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKL 145 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH---------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHH
Confidence 689999999999999988754332 224688999999999998887 343344433
No 113
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=38.00 E-value=1.1e+02 Score=33.38 Aligned_cols=105 Identities=14% Similarity=0.149 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCeEEecc-cCCccccCCCCCCC-CChHHHHHHHHHHHHHHHCC-CeEEEEecCCCCchhHHhhhCCCC
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWPRLLPKGKISGG-VNPLGVQFYNNLIDELIANG-IKPFVTLFHWDLPQVLEDEYGGFL 181 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~G-I~p~vtL~H~~~P~wl~~~~ggw~ 181 (530)
+|.+++|+++|+|-+.+++ +-+.-.-+.- |. .+. +-..+.|+.+++.| +.+.+.| =+++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l--gR~~~~---~~~~~~i~~l~~~g~~~v~~Dl-I~GlPg---------- 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA--GRKDDR---EEVLARLEELVARDRAAVVCDL-IFGLPG---------- 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh--CCCCCH---HHHHHHHHHHHhCCCCcEEEEE-EeeCCC----------
Confidence 6899999999999888888 4432211110 22 222 44567889999999 4444444 346663
Q ss_pred ChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcccccccccccccC
Q 009642 182 SSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSISIGGYAIGVYA 227 (530)
Q Consensus 182 ~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~~~~~y~~G~~~ 227 (530)
++.+.|.+=.+.+.+-=-+.|..+...-||+......+..|..+
T Consensus 227 --qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 --QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 23344544455555443478888888888886443333334443
No 114
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=37.80 E-value=48 Score=37.07 Aligned_cols=58 Identities=21% Similarity=0.440 Sum_probs=40.1
Q ss_pred hhchHHHHHHHHHcCCCeEEeccc--------------CCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE--e
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSIS--------------WPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT--L 164 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si~--------------W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt--L 164 (530)
+.-..+-+.-+++||++++=++=- .-+|.|.- | ..+=++++|++++++||++|+. +
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~---G-----t~~df~~Lv~~ah~~Gi~vilD~V~ 98 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF---G-----TIDDFKDFVDEAHARGMRVIIDLVL 98 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh---C-----CHHHHHHHHHHHHHCCCEEEEEecc
Confidence 344566788999999998765421 12233332 2 2355889999999999999985 5
Q ss_pred cC
Q 009642 165 FH 166 (530)
Q Consensus 165 ~H 166 (530)
.|
T Consensus 99 NH 100 (539)
T TIGR02456 99 NH 100 (539)
T ss_pred Cc
Confidence 56
No 115
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=37.46 E-value=2e+02 Score=29.19 Aligned_cols=69 Identities=12% Similarity=0.013 Sum_probs=48.9
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCCh
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSS 183 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~ 183 (530)
-++|+++..+.|++.+|+++..+. ++-....++.++++|+++.+++.--+- ++
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~---------------~~~~~~~i~~ak~~G~~v~~~i~~~~~------------~~ 145 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND---------------VRNLEVAIKAVKKAGKHVEGAICYTGS------------PV 145 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh---------------HHHHHHHHHHHHHCCCeEEEEEEecCC------------CC
Confidence 479999999999999999875443 355678899999999998877632111 12
Q ss_pred HHHHHHHHHHHHHHHH
Q 009642 184 EIVKDFGDYADFCFKT 199 (530)
Q Consensus 184 ~~~~~f~~ya~~~~~~ 199 (530)
...+.+.++++.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~ 161 (275)
T cd07937 146 HTLEYYVKLAKELEDM 161 (275)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 2346667777776543
No 116
>PRK09505 malS alpha-amylase; Reviewed
Probab=37.14 E-value=71 Score=36.96 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=41.2
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccc-----------cCCCCCC-------CCC--hHHHHHHHHHHHHHHHCCCeEEEE
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLL-----------PKGKISG-------GVN--PLGVQFYNNLIDELIANGIKPFVT 163 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~-----------P~~~~~g-------~~n--~~gl~~y~~~i~~l~~~GI~p~vt 163 (530)
..+-+.-+|+||++++=++=-...+. |....-| .+| .-..+=+++||++++++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55667889999999998764333321 1000000 111 113456899999999999999996
Q ss_pred --ecCCC
Q 009642 164 --LFHWD 168 (530)
Q Consensus 164 --L~H~~ 168 (530)
+.|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 56644
No 117
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=37.14 E-value=24 Score=27.64 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=32.5
Q ss_pred CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 009642 126 PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWD 168 (530)
Q Consensus 126 ~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~ 168 (530)
+++-|.. +.-..++++..-+++..|-++|| +.+.|++-+
T Consensus 19 s~l~p~~---~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE---GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc---ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 5778887 66678999999999999999999 677777643
No 118
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=36.68 E-value=29 Score=25.33 Aligned_cols=13 Identities=46% Similarity=0.278 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q 009642 7 LLLICSIGALAGL 19 (530)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (530)
-||||||.++|-+
T Consensus 3 kll~~slltlam~ 15 (48)
T PF05968_consen 3 KLLIGSLLTLAMA 15 (48)
T ss_pred hHHHhHHHHHHHH
Confidence 3799999999844
No 119
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=36.68 E-value=2.2e+02 Score=29.50 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCeEEEEecCC---CCchhHHhh---------h-----------CC---CCChHHHHHHHHHHHHHHHH
Q 009642 146 YNNLIDELIANGIKPFVTLFHW---DLPQVLEDE---------Y-----------GG---FLSSEIVKDFGDYADFCFKT 199 (530)
Q Consensus 146 y~~~i~~l~~~GI~p~vtL~H~---~~P~wl~~~---------~-----------gg---w~~~~~~~~f~~ya~~~~~~ 199 (530)
-.++|+.|+++|++.++.+.-+ +.+.+-+-+ . ++ |.||+.++.|.+..+..+..
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 5689999999999988866333 122211110 0 12 56888888887766655544
Q ss_pred hcCcccEEEeccCCccc
Q 009642 200 FGDRVKQWVTMAEPNSI 216 (530)
Q Consensus 200 ~~d~V~~W~t~NEp~~~ 216 (530)
.|= --+|+=+|||..+
T Consensus 148 ~Gv-dg~w~D~~Ep~~~ 163 (319)
T cd06591 148 KGV-DAWWLDAAEPEYS 163 (319)
T ss_pred CCC-cEEEecCCCCCcc
Confidence 442 4578889999865
No 120
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=36.24 E-value=2.1e+02 Score=29.94 Aligned_cols=68 Identities=22% Similarity=0.170 Sum_probs=47.5
Q ss_pred HHHHHHHHHCCCeEEEEecCCCCc--------hhHHh-h------------------h--C---CCCChHHHHHHHHHHH
Q 009642 147 NNLIDELIANGIKPFVTLFHWDLP--------QVLED-E------------------Y--G---GFLSSEIVKDFGDYAD 194 (530)
Q Consensus 147 ~~~i~~l~~~GI~p~vtL~H~~~P--------~wl~~-~------------------~--g---gw~~~~~~~~f~~ya~ 194 (530)
.++|++|+++|++.++.+.-+-.+ .+-+. + . + -+.||+.++.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 799999999999998887555333 22110 0 0 1 2668999999988888
Q ss_pred HHHHHhcCcccEEEeccCCcc
Q 009642 195 FCFKTFGDRVKQWVTMAEPNS 215 (530)
Q Consensus 195 ~~~~~~~d~V~~W~t~NEp~~ 215 (530)
.++..+|- --+|+=+|||..
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCCC-cEEEecCCCCch
Confidence 77766553 357888999864
No 121
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.93 E-value=81 Score=33.11 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChH
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSE 184 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~ 184 (530)
.+|++.+.+.|++.+|+...+++. +--.+.|+.+++.|++..+++..-. ..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~---------------~~~~~~i~~ak~~G~~v~~~l~~a~--------------~~ 141 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA---------------DVSEQHIGLARELGMDTVGFLMMSH--------------MA 141 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH---------------HHHHHHHHHHHHCCCeEEEEEEecc--------------CC
Confidence 589999999999999998754432 2246899999999999999886531 12
Q ss_pred HHHHHHHHHHHHHHHhc
Q 009642 185 IVKDFGDYADFCFKTFG 201 (530)
Q Consensus 185 ~~~~f~~ya~~~~~~~~ 201 (530)
..+.+++.++.+. .+|
T Consensus 142 ~~e~l~~~a~~~~-~~G 157 (337)
T PRK08195 142 PPEKLAEQAKLME-SYG 157 (337)
T ss_pred CHHHHHHHHHHHH-hCC
Confidence 3466777777754 455
No 122
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=35.32 E-value=1.2e+02 Score=30.17 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=45.9
Q ss_pred ecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHh
Q 009642 121 FSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTF 200 (530)
Q Consensus 121 ~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~ 200 (530)
+.++|..+.++|.+ .... .......+++.++++|+++++.+..+....... -..++..++.|++=+-..+++|
T Consensus 26 v~~~f~~i~~~G~l--~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 26 INLAFANPDANGTL--NANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSY 98 (253)
T ss_pred EEEEEEEECCCCeE--EecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHh
Confidence 44456666666531 1110 123467889999999999999997665443211 1246677777777666666666
Q ss_pred c
Q 009642 201 G 201 (530)
Q Consensus 201 ~ 201 (530)
+
T Consensus 99 ~ 99 (253)
T cd06545 99 N 99 (253)
T ss_pred C
Confidence 4
No 123
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=35.31 E-value=1.1e+02 Score=30.14 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHhc
Q 009642 143 VQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFG 201 (530)
Q Consensus 143 l~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 201 (530)
.+.....|..|+++|+++++++.-+.....+ ....+++.++.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3557789999999999999999765544222 112455666777777766677765
No 124
>PRK07094 biotin synthase; Provisional
Probab=34.88 E-value=65 Score=33.18 Aligned_cols=56 Identities=21% Similarity=0.157 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCCCeEEeccc-C-CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009642 103 RYKEDIKLMKETGLDSFRFSIS-W-PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT 163 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si~-W-~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt 163 (530)
+-+|+++.|+++|++.+-++++ - .++...-. ...+. +.+.+.|+.+++.||.+..+
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~--~~~s~---~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLH--PGMSF---ENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhC--CCCCH---HHHHHHHHHHHHcCCeecce
Confidence 4479999999999999999983 3 24443321 12233 56888999999999975443
No 125
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=32.89 E-value=56 Score=29.50 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHHhcCc-ccEEEeccCCc
Q 009642 144 QFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKTFGDR-VKQWVTMAEPN 214 (530)
Q Consensus 144 ~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~-V~~W~t~NEp~ 214 (530)
+=+.-+|+.|++.|++|++.+.= -.+.|.. +-| .+.+..+.|.+=.+.++++.|=. +++.---+||.
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~v~D~s~~~y~~y 103 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFNVADFSDDEYEPY 103 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--EEE-TTGTTSTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCEEEecccCCCCCc
Confidence 44789999999999999998821 1223332 234 35677888888888888888753 33433344444
No 126
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=32.50 E-value=1.7e+02 Score=33.26 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=61.0
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCc----hhHHhh---
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLP----QVLEDE--- 176 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P----~wl~~~--- 176 (530)
.++|++++.+.|++.+|+..+.+.+ +-....++.++++|+...+++.+.+-| ..+.+-
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~ 157 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP---------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEE 157 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHH
Confidence 4567899999999999999766543 225577788889999888887765555 222210
Q ss_pred -------------hCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCccc
Q 009642 177 -------------YGGFLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSI 216 (530)
Q Consensus 177 -------------~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~ 216 (530)
-.|...|..+ .+.++.+.++++ ..-..++-|-..+-
T Consensus 158 ~~~~Gad~I~i~Dt~G~~~P~~v---~~lv~~lk~~~~-~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 158 LLEMGVDSICIKDMAGILTPKAA---YELVSALKKRFG-LPVHLHSHATTGMA 206 (582)
T ss_pred HHHcCCCEEEECCCCCCcCHHHH---HHHHHHHHHhCC-CceEEEecCCCCcH
Confidence 2456666543 344444455665 33467777776643
No 127
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=32.36 E-value=3.5e+02 Score=28.56 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=64.1
Q ss_pred CccccchhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhH
Q 009642 94 ANVAIDFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVL 173 (530)
Q Consensus 94 ~~~a~d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl 173 (530)
+-+|.=||+ |+- .-...+.|+..+|.+ | |.+-.+ +....+++.++++||-.=+..+|-.+..-+
T Consensus 76 PLVaDiHf~-~rl-a~~~~~~g~~k~RIN-------P-----GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~ 139 (361)
T COG0821 76 PLVADIHFD-YRL-ALEAAECGVDKVRIN-------P-----GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRL 139 (361)
T ss_pred CEEEEeecc-HHH-HHHhhhcCcceEEEC-------C-----cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHH
Confidence 334555776 443 233456779998864 3 433322 368899999999999999999999999999
Q ss_pred HhhhCCCCChHHHHHHHHHHHHHH
Q 009642 174 EDEYGGFLSSEIVKDFGDYADFCF 197 (530)
Q Consensus 174 ~~~~ggw~~~~~~~~f~~ya~~~~ 197 (530)
.++||+-..+..++--.++|+.+-
T Consensus 140 ~~ky~~pt~ealveSAl~~a~~~e 163 (361)
T COG0821 140 LEKYGGPTPEALVESALEHAELLE 163 (361)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999987766666676667776643
No 128
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=32.15 E-value=2.1e+02 Score=29.86 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=49.4
Q ss_pred HHHHHHHHHCCCeEEEEecCCCC-----chhHHhh---------h----------C-----CCCChHHHHHHHHHHHHHH
Q 009642 147 NNLIDELIANGIKPFVTLFHWDL-----PQVLEDE---------Y----------G-----GFLSSEIVKDFGDYADFCF 197 (530)
Q Consensus 147 ~~~i~~l~~~GI~p~vtL~H~~~-----P~wl~~~---------~----------g-----gw~~~~~~~~f~~ya~~~~ 197 (530)
..+|+.|+++|++.++.+.-+-. |..-+-+ . | .+.||+.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 57999999999998887765422 2221111 0 1 3678999999999988876
Q ss_pred HHhc-CcccEEEeccCCcccc
Q 009642 198 KTFG-DRVKQWVTMAEPNSIS 217 (530)
Q Consensus 198 ~~~~-d~V~~W~t~NEp~~~~ 217 (530)
...+ ...-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 6433 2357889999998753
No 129
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.69 E-value=3.8e+02 Score=27.62 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCeEEEEecCCC---CchhHHhhh---------C----------------CCCChHHHHHHHHHHHHHH
Q 009642 146 YNNLIDELIANGIKPFVTLFHWD---LPQVLEDEY---------G----------------GFLSSEIVKDFGDYADFCF 197 (530)
Q Consensus 146 y~~~i~~l~~~GI~p~vtL~H~~---~P~wl~~~~---------g----------------gw~~~~~~~~f~~ya~~~~ 197 (530)
-.+||++|+++|++.++.+.-+- .|..-+-+. | .+.||+.++.|.+..+..+
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 45999999999999998765542 232211110 1 1468899999988776666
Q ss_pred HHhcCcccEEEeccCCcc
Q 009642 198 KTFGDRVKQWVTMAEPNS 215 (530)
Q Consensus 198 ~~~~d~V~~W~t~NEp~~ 215 (530)
...|- --+|+=+|||.+
T Consensus 155 ~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 155 LDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred hcCCC-cEEEecCCCCcc
Confidence 55542 347788999974
No 130
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=31.46 E-value=1.8e+02 Score=30.44 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHH
Q 009642 106 EDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEI 185 (530)
Q Consensus 106 eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~ 185 (530)
-+.+.+|++|.++..|=+=|. |++. -.+|..-.++.+++.++|++++|-=++=+..+|.+. .+. ++ .++
T Consensus 110 ~s~~rike~GadavK~Llyy~---pD~~--~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~--~~~-~~---~~y 178 (325)
T TIGR01232 110 WSAKRLKEQGANAVKFLLYYD---VDDA--EEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI--PDN-GS---VEF 178 (325)
T ss_pred ccHHHHHHhCCCeEEEEEEeC---CCCC--hHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC--CCC-Cc---HHH
Confidence 357889999999999988775 4432 457888899999999999999999999888887664 121 22 223
Q ss_pred HHHHHHHHHHHHHHhcC---cccEEE
Q 009642 186 VKDFGDYADFCFKTFGD---RVKQWV 208 (530)
Q Consensus 186 ~~~f~~ya~~~~~~~~d---~V~~W~ 208 (530)
.+.--+.+-..++.|++ .|+.|-
T Consensus 179 ak~kP~~V~~a~kefs~~~~gvDVlK 204 (325)
T TIGR01232 179 AKVKPRKVNEAMKLFSEPRFNVDVLK 204 (325)
T ss_pred HHhChHHHHHHHHHhccCCCCCcEEE
Confidence 32233444455666665 355554
No 131
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=30.58 E-value=2.2e+02 Score=30.15 Aligned_cols=93 Identities=15% Similarity=0.235 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCCeEEecc-cCCc-cccCCCCCCC-CChHHHHHHHHHHHHHHHCCCeEE-EEecCCCCchhHHhhhCCC
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWPR-LLPKGKISGG-VNPLGVQFYNNLIDELIANGIKPF-VTLFHWDLPQVLEDEYGGF 180 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~r-i~P~~~~~g~-~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~~~P~wl~~~~ggw 180 (530)
++.+++|+++|+|-+.+++ +=+. +.-.- |. .+. +-..+.++.+++.|+..+ +.| =+++|.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l---~R~~~~---~~~~~ai~~~~~~g~~~v~~Dl-i~GlPg--------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLL---GRTHSS---SKAIDAVQECSEHGFSNLSIDL-IYGLPT--------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC---------
Confidence 6889999999999766666 2221 11111 21 222 445678889999999744 443 345663
Q ss_pred CChHHHHHHHHHHHHHHHHhcCcccEEEeccCCccc
Q 009642 181 LSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSI 216 (530)
Q Consensus 181 ~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~ 216 (530)
++.+.|.+-.+.+.+.=-+.|..+...-||+..
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 345667777777665444788888888888754
No 132
>PRK12677 xylose isomerase; Provisional
Probab=30.50 E-value=4.5e+02 Score=28.11 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=47.2
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEecCCCCchhHHhhhCCCCC
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPF-VTLFHWDLPQVLEDEYGGFLS 182 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~~~P~wl~~~~ggw~~ 182 (530)
.+|-++.++++|+..+=+.. ..+.|-.. ..... -...+++-+.+.++||++. +|...|..|.+ +.|++.+
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~~---~~~~~-~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts 103 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFGA---TDAER-DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTS 103 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCCC---Chhhh-HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCC
Confidence 68999999999999986632 23444431 11111 1346788888899999965 56666666654 2488887
Q ss_pred h
Q 009642 183 S 183 (530)
Q Consensus 183 ~ 183 (530)
+
T Consensus 104 ~ 104 (384)
T PRK12677 104 N 104 (384)
T ss_pred C
Confidence 5
No 133
>PTZ00445 p36-lilke protein; Provisional
Probab=30.40 E-value=95 Score=30.59 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCCeEEecccCCcccc-CCCCCCCCChH---------HHHHHHHHHHHHHHCCCeEEEEecC
Q 009642 106 EDIKLMKETGLDSFRFSISWPRLLP-KGKISGGVNPL---------GVQFYNNLIDELIANGIKPFVTLFH 166 (530)
Q Consensus 106 eDi~l~k~lG~~~~R~si~W~ri~P-~~~~~g~~n~~---------gl~~y~~~i~~l~~~GI~p~vtL~H 166 (530)
.=++++++.||+++=+.+.=+-|-- .| |-.+.. +-.-...++.+|+++||..+|.++-
T Consensus 33 ~~v~~L~~~GIk~Va~D~DnTlI~~Hsg---G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 33 KFVDLLNECGIKVIASDFDLTMITKHSG---GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHHHcCCeEEEecchhhhhhhhcc---cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3457899999999988876665541 12 322222 3355778999999999998887754
No 134
>PRK03705 glycogen debranching enzyme; Provisional
Probab=30.39 E-value=1.2e+02 Score=34.98 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=37.4
Q ss_pred HHHHHHcCCCeEEecc--c---------------C-------CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009642 108 IKLMKETGLDSFRFSI--S---------------W-------PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT 163 (530)
Q Consensus 108 i~l~k~lG~~~~R~si--~---------------W-------~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt 163 (530)
|.-+|+|||+++=+.= + | -.+.|.- |.-....++=+++||++|.++||++|+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y---gt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY---ASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc---CCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 8889999999886531 1 2 2233332 2211123566999999999999999986
Q ss_pred --ecC
Q 009642 164 --LFH 166 (530)
Q Consensus 164 --L~H 166 (530)
+.|
T Consensus 262 vV~NH 266 (658)
T PRK03705 262 VVFNH 266 (658)
T ss_pred EcccC
Confidence 445
No 135
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=29.82 E-value=1.3e+02 Score=35.42 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=43.6
Q ss_pred hhchHHHHHHHHHcCCCeEEeccc---------------CCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE--
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSIS---------------WPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT-- 163 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si~---------------W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt-- 163 (530)
+....+-+.-+++||++++=+|=- +.+|.|.- | +.+=+++++++++++||.+|+.
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL---G-----GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 344788889999999998865533 33444443 3 2355889999999999999986
Q ss_pred ecCCC
Q 009642 164 LFHWD 168 (530)
Q Consensus 164 L~H~~ 168 (530)
++|..
T Consensus 87 pNH~a 91 (825)
T TIGR02401 87 PNHMA 91 (825)
T ss_pred ccccc
Confidence 56654
No 136
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=29.72 E-value=69 Score=34.92 Aligned_cols=85 Identities=16% Similarity=0.366 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCeEEe-------------------------cccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 009642 106 EDIKLMKETGLDSFRF-------------------------SISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKP 160 (530)
Q Consensus 106 eDi~l~k~lG~~~~R~-------------------------si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p 160 (530)
+=++++|+|.+...|+ .+.|.-.|+.. -| .+++++-|...|.+|
T Consensus 53 DVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~--------~G---t~EF~~~~e~iGaep 121 (501)
T COG3534 53 DVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNE--------FG---THEFMDWCELIGAEP 121 (501)
T ss_pred HHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccc--------cc---HHHHHHHHHHhCCce
Confidence 3357888888887775 33444333333 22 458999999999999
Q ss_pred EEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHH--------HHHhcC----cccEEEeccCC
Q 009642 161 FVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFC--------FKTFGD----RVKQWVTMAEP 213 (530)
Q Consensus 161 ~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~--------~~~~~d----~V~~W~t~NEp 213 (530)
++++.- |. ...+....|++||..= -...|. .|+||.+=||-
T Consensus 122 ~~avN~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 122 YIAVNL-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred EEEEec-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 999853 21 3335566777777432 222332 49999999995
No 137
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=29.67 E-value=3.5e+02 Score=27.97 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=47.3
Q ss_pred HHHHHHHHHHCCCeEEEEecCCC-----CchhHHhh-------------------hC-----CCCChHHHHHHHHHHHHH
Q 009642 146 YNNLIDELIANGIKPFVTLFHWD-----LPQVLEDE-------------------YG-----GFLSSEIVKDFGDYADFC 196 (530)
Q Consensus 146 y~~~i~~l~~~GI~p~vtL~H~~-----~P~wl~~~-------------------~g-----gw~~~~~~~~f~~ya~~~ 196 (530)
-.++|+.|+++|++.++.+.-+- .|...+.. .| .|.||+.++.|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 45899999999999877664332 12221110 01 267899999999888887
Q ss_pred HHHhcCcccEEEeccCCccc
Q 009642 197 FKTFGDRVKQWVTMAEPNSI 216 (530)
Q Consensus 197 ~~~~~d~V~~W~t~NEp~~~ 216 (530)
....|- --+|+=+|||..+
T Consensus 146 ~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hhcCCC-ceEEeeCCCCccH
Confidence 655553 3478889998643
No 138
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=29.48 E-value=1.8e+02 Score=31.89 Aligned_cols=76 Identities=28% Similarity=0.331 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCeEEecc-cCCc-cccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCC
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWPR-LLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLS 182 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~r-i~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~ 182 (530)
+|.+++|+++|++.+-+++ +-+. +.-.-. -..+ ++.+.+.++.++++||.+.+.+.- ++|. .+
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~--K~~~---~~~~~~~i~~~~~~Gi~v~~~~Ii-GlPg---------et 351 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIK--KGLT---VEIARRFTRDCHKLGIKVHGTFIL-GLPG---------ET 351 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc--CCCC---HHHHHHHHHHHHHCCCeEEEEEEE-eCCC---------CC
Confidence 5778999999999888888 4432 221110 1123 356789999999999998876643 4452 34
Q ss_pred hHHHHHHHHHHHH
Q 009642 183 SEIVKDFGDYADF 195 (530)
Q Consensus 183 ~~~~~~f~~ya~~ 195 (530)
++.+..-.+|+..
T Consensus 352 ~e~~~~ti~~~~~ 364 (472)
T TIGR03471 352 RETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHHHHHh
Confidence 4445555555443
No 139
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.19 E-value=2.1e+02 Score=29.00 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=52.5
Q ss_pred ccchhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHH
Q 009642 97 AIDFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLE 174 (530)
Q Consensus 97 a~d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~ 174 (530)
.....+...+=.+.+|++|+..+|-+..=+|--|.+. .| +-. +.+..+-+.+.+.||..+.+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~-~G-~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSF-QG-LGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCcc-CC-cHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 3456777788889999999999999985577776542 12 224 5566677778999999888887755555544
No 140
>PRK10785 maltodextrin glucosidase; Provisional
Probab=29.17 E-value=1e+02 Score=35.01 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCCCeEEecc-------------cCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE--ecC
Q 009642 103 RYKEDIKLMKETGLDSFRFSI-------------SWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT--LFH 166 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si-------------~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt--L~H 166 (530)
-..+-+.-+|+|||+++=++= .+-+|.|.- | ..+=+++|+++++++||++|+. +.|
T Consensus 180 GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~---G-----t~~df~~Lv~~aH~rGikVilD~V~NH 250 (598)
T PRK10785 180 GISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL---G-----GDAALLRLRHATQQRGMRLVLDGVFNH 250 (598)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 356778889999999877652 223333332 3 2245889999999999999986 456
No 141
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=29.12 E-value=2.3e+02 Score=29.66 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=44.3
Q ss_pred HHHHHHHHHCCCeEEEEecCC-CCchhHHhhhC---CCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcccccc
Q 009642 147 NNLIDELIANGIKPFVTLFHW-DLPQVLEDEYG---GFLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSISIG 219 (530)
Q Consensus 147 ~~~i~~l~~~GI~p~vtL~H~-~~P~wl~~~~g---gw~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~~~~ 219 (530)
+.++++|++.|++.++.+.-+ ..-..+.. .+ -|.||++++.|.+..+.+.+ .|- --+|+=.|||.++...
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~-~~~~pDftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGS-PGLYPDLGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCC-CceeeCCCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCC
Confidence 489999999999977754321 10000000 12 36789999988777655443 232 3489999999977543
No 142
>PRK06256 biotin synthase; Validated
Probab=28.76 E-value=88 Score=32.47 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=39.5
Q ss_pred chHHHHHHHHHcCCCeEEecc-cCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009642 103 RYKEDIKLMKETGLDSFRFSI-SWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT 163 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si-~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt 163 (530)
.-+|.++.||++|++.+-+++ +=.++++.-. ...+ .+.+.+.|+.+++.||++..+
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~--~~~t---~~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVV--TTHT---YEDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcC--CCCC---HHHHHHHHHHHHHcCCeeccC
Confidence 457999999999999998887 4223444321 2223 356778999999999986554
No 143
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=28.66 E-value=3.7e+02 Score=26.11 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=67.5
Q ss_pred HHHHHH----HHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCC--CchhHHhh--
Q 009642 105 KEDIKL----MKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWD--LPQVLEDE-- 176 (530)
Q Consensus 105 ~eDi~l----~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~--~P~wl~~~-- 176 (530)
++|++. +++.|++.+|+.++=+........ +.--.+.++-..++++.+++.|++..+++.+.. .|..+.+-
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNL-NKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHT-CSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhh-cCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 355555 557999999999966654433211 333456678889999999999999999987754 33333221
Q ss_pred --------------hCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009642 177 --------------YGGFLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPN 214 (530)
Q Consensus 177 --------------~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~ 214 (530)
--|...| ....++.+.+.+++++..--++.-|-..
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P---~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTP---EDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-H---HHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred HHHHcCCeEEEeeCccCCcCH---HHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 1244444 3455667777777776555666666544
No 144
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=28.47 E-value=1.5e+02 Score=29.59 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=34.7
Q ss_pred HHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 108 IKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 108 i~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
.+++|++|++..=++=|=.|-.=.. --+...+-+..++++||+|++|+
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~E---------t~~~i~~Kv~~a~~~gl~pIvCi 124 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYFGE---------TDEDVAKKVKAALEAGLTPILCV 124 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCcCCC---------CcHHHHHHHHHHHHCCCEEEEEe
Confidence 4689999998877766433322111 12567788999999999999998
No 145
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=28.24 E-value=1.2e+02 Score=35.21 Aligned_cols=59 Identities=19% Similarity=0.367 Sum_probs=39.6
Q ss_pred HHHHHHcCCCeEEe----cccCCccccCCCCC--------------CCC--C---hHHHHHHHHHHHHHHHCCCeEEEE-
Q 009642 108 IKLMKETGLDSFRF----SISWPRLLPKGKIS--------------GGV--N---PLGVQFYNNLIDELIANGIKPFVT- 163 (530)
Q Consensus 108 i~l~k~lG~~~~R~----si~W~ri~P~~~~~--------------g~~--n---~~gl~~y~~~i~~l~~~GI~p~vt- 163 (530)
|+-+|+|||+++.+ ++.+.+...+.... |.+ | ...+.=++.||++|.++||++|+.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999984 44444444322100 111 1 123666999999999999999986
Q ss_pred -ecC
Q 009642 164 -LFH 166 (530)
Q Consensus 164 -L~H 166 (530)
..|
T Consensus 286 VfNH 289 (697)
T COG1523 286 VFNH 289 (697)
T ss_pred eccC
Confidence 445
No 146
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=28.04 E-value=73 Score=39.44 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=40.2
Q ss_pred hhhchH--HHHHHHHHcCCCeEEeccc------------------------CCccccCCCCCCCCChHHHHHHHHHHHHH
Q 009642 100 FYHRYK--EDIKLMKETGLDSFRFSIS------------------------WPRLLPKGKISGGVNPLGVQFYNNLIDEL 153 (530)
Q Consensus 100 ~y~r~~--eDi~l~k~lG~~~~R~si~------------------------W~ri~P~~~~~g~~n~~gl~~y~~~i~~l 153 (530)
-|.... +.|.-+|+|||+++=+.=- +-.+.|.- |. ..++=+++||++|
T Consensus 183 t~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~y---g~---~~~~efk~lV~~~ 256 (1221)
T PRK14510 183 TFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRL---AP---GGEEEFAQAIKEA 256 (1221)
T ss_pred HHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhh---cc---CcHHHHHHHHHHH
Confidence 344444 6688999999999865421 11122221 21 1345589999999
Q ss_pred HHCCCeEEEE--ecC
Q 009642 154 IANGIKPFVT--LFH 166 (530)
Q Consensus 154 ~~~GI~p~vt--L~H 166 (530)
.++||++|+. ..|
T Consensus 257 H~~GI~VILDvV~NH 271 (1221)
T PRK14510 257 QSAGIAVILDVVFNH 271 (1221)
T ss_pred HHCCCEEEEEEcccc
Confidence 9999999986 445
No 147
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.59 E-value=4.2e+02 Score=27.09 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=33.2
Q ss_pred CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Q 009642 126 PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHW 167 (530)
Q Consensus 126 ~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~ 167 (530)
.+..|... |-++.+-++.++++.+.++++|-+.++=|.|.
T Consensus 61 ~~~~~~~~--~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 61 GKGYPGQL--GIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred ccCCCCCc--CcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 34455542 77899999999999999999999999999994
No 148
>PRK10426 alpha-glucosidase; Provisional
Probab=27.30 E-value=4.7e+02 Score=30.06 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=66.2
Q ss_pred chHHHHHHHHHcCCCeEEecc-cCCccccCCCCCC-------CCChHHHHHHHHHHHHHHHCCCeEEEEecCC---CCch
Q 009642 103 RYKEDIKLMKETGLDSFRFSI-SWPRLLPKGKISG-------GVNPLGVQFYNNLIDELIANGIKPFVTLFHW---DLPQ 171 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si-~W~ri~P~~~~~g-------~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---~~P~ 171 (530)
...+-++.+++.||..==+-| .|.-...... | .+|.+-..--+++|++|++.|++.++.+.-+ +.|.
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~--g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~ 299 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSF--GKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDL 299 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccc--cccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHH
Confidence 355677889999987655534 6764422110 1 2233222224789999999999988766443 3444
Q ss_pred hHHhh---------hC---------------CCCChHHHHHHHHHHHHHHHHhcCcccEE-EeccCC
Q 009642 172 VLEDE---------YG---------------GFLSSEIVKDFGDYADFCFKTFGDRVKQW-VTMAEP 213 (530)
Q Consensus 172 wl~~~---------~g---------------gw~~~~~~~~f~~ya~~~~~~~~d~V~~W-~t~NEp 213 (530)
+-+-+ .| -+.||+.++.|.+..+.-+...| |+.| .=+||+
T Consensus 300 y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 300 CEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 32211 11 16789999999887766555555 6655 778884
No 149
>PLN02960 alpha-amylase
Probab=27.22 E-value=1.3e+02 Score=35.85 Aligned_cols=95 Identities=12% Similarity=0.219 Sum_probs=60.1
Q ss_pred chhhchHHH-HHHHHHcCCCeEEecc--------cCC-------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 009642 99 DFYHRYKED-IKLMKETGLDSFRFSI--------SWP-------RLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFV 162 (530)
Q Consensus 99 d~y~r~~eD-i~l~k~lG~~~~R~si--------~W~-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~v 162 (530)
..|.-..+. |.-+|+||++++-+.= +|. .+.|.- |. .+=++.+|++|.++||.+|+
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y---Gt-----p~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF---GT-----PDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc---CC-----HHHHHHHHHHHHHCCCEEEE
Confidence 355555544 8999999999977642 121 122221 32 24488999999999999999
Q ss_pred Ee--cCCCC--c--h---------hHHh--h-----hC----CCCChHHHHHHHHHHHHHHHHhc
Q 009642 163 TL--FHWDL--P--Q---------VLED--E-----YG----GFLSSEIVKDFGDYADFCFKTFG 201 (530)
Q Consensus 163 tL--~H~~~--P--~---------wl~~--~-----~g----gw~~~~~~~~f~~ya~~~~~~~~ 201 (530)
.+ .|+.. + + ++.. + .| ...++++.+.+.+=++.-+++|+
T Consensus 485 DvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 485 DIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred EecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 76 45421 1 1 1110 0 01 12256888899999999999885
No 150
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.20 E-value=2.2e+02 Score=33.48 Aligned_cols=100 Identities=23% Similarity=0.282 Sum_probs=61.2
Q ss_pred CCCeEEeccc-CCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCC---CCchhHHhh--------------
Q 009642 115 GLDSFRFSIS-WPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHW---DLPQVLEDE-------------- 176 (530)
Q Consensus 115 G~~~~R~si~-W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---~~P~wl~~~-------------- 176 (530)
=+.++++++. |.+ .-+. =++|..-.---+.||+.|++.||+.++.+... |.|+.-+-.
T Consensus 295 P~d~~~lD~~~~~~--~~~~--F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 295 PLDVFVLDIDFWMD--NWGD--FTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred cceEEEEeehhhhc--cccc--eEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 3568999995 886 1110 12222222223499999999999998877652 444332111
Q ss_pred -------hC---CCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcccccc
Q 009642 177 -------YG---GFLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSISIG 219 (530)
Q Consensus 177 -------~g---gw~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~~~~ 219 (530)
.+ -+.||+.++.|.+....-+..+| -.-+|.=+|||.+....
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 01 26789999999973333333333 25689999999977544
No 151
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=26.99 E-value=4.4e+02 Score=24.69 Aligned_cols=51 Identities=18% Similarity=0.389 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCc
Q 009642 106 EDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLP 170 (530)
Q Consensus 106 eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P 170 (530)
-|.+.+|+.|++..=+=+. +|+ +.+| ..|..-++.++++|| .+..|||..|
T Consensus 12 id~~~~k~~gi~fviiKat------eG~--~y~D----~~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 12 INFNAVKDSGVEVVYIKAT------EGT--TFVD----SYFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CCHHHHHhCCCeEEEEEec------CCC--cccC----HhHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 4677788888774333221 332 3456 468888999999998 4788997755
No 152
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=26.92 E-value=2.2e+02 Score=29.00 Aligned_cols=60 Identities=30% Similarity=0.387 Sum_probs=48.3
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
-++|++...++|++..-+.++=|...-.... +.=-++.++.+.++++..+++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~-~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKL-KMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3799999999999999988866655444211 33456788999999999999999999988
No 153
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=26.91 E-value=1.9e+02 Score=29.62 Aligned_cols=66 Identities=18% Similarity=0.362 Sum_probs=47.6
Q ss_pred hchHHHHHHHHHcCCCeEEeccc----CCc---cccCC----------CCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 102 HRYKEDIKLMKETGLDSFRFSIS----WPR---LLPKG----------KISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 102 ~r~~eDi~l~k~lG~~~~R~si~----W~r---i~P~~----------~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
...++-|++|+..++|.+.+-++ |.- ..|.- ..+|.+.. +=++++++.++++||+.|.-+
T Consensus 16 ~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viPEi 92 (303)
T cd02742 16 ESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIPEI 92 (303)
T ss_pred HHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEEec
Confidence 34678899999999999988876 632 22321 01245666 447799999999999988876
Q ss_pred cCCCCchhH
Q 009642 165 FHWDLPQVL 173 (530)
Q Consensus 165 ~H~~~P~wl 173 (530)
|+|...
T Consensus 93 ---D~PGH~ 98 (303)
T cd02742 93 ---DMPGHS 98 (303)
T ss_pred ---cchHHH
Confidence 788765
No 154
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.42 E-value=2e+02 Score=28.86 Aligned_cols=79 Identities=11% Similarity=0.007 Sum_probs=52.8
Q ss_pred HHHHHHHHHcC----CCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCC
Q 009642 105 KEDIKLMKETG----LDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGF 180 (530)
Q Consensus 105 ~eDi~l~k~lG----~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw 180 (530)
.+|++++.+.| ++.+|+.++.|.+.-.... +.=-.+.++-..+.++.+++.|++..++..+ .+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL-KKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 79999999999 9999998876655322110 2223345777889999999999997755422 222
Q ss_pred CChHHHHHHHHHHHHHHH
Q 009642 181 LSSEIVKDFGDYADFCFK 198 (530)
Q Consensus 181 ~~~~~~~~f~~ya~~~~~ 198 (530)
. ..+.+.+.++.+.+
T Consensus 140 ~---~~~~~~~~~~~~~~ 154 (268)
T cd07940 140 T---DLDFLIEVVEAAIE 154 (268)
T ss_pred C---CHHHHHHHHHHHHH
Confidence 2 24556666666643
No 155
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.40 E-value=2.6e+02 Score=28.69 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=46.1
Q ss_pred chHHHHHHHHHcCCCeEEecc----cCCccccCCC-CCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHH
Q 009642 103 RYKEDIKLMKETGLDSFRFSI----SWPRLLPKGK-ISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLE 174 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si----~W~ri~P~~~-~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~ 174 (530)
-.++=|++|+.+|+|.+-+=+ .+.. .|.-. .+|.+.. +=++++++.++++||++|--+ |+|..+.
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 367889999999999887744 2221 22211 0267777 446799999999999988876 6776653
No 156
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=26.24 E-value=91 Score=36.13 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEE--ecC
Q 009642 143 VQFYNNLIDELIANGIKPFVT--LFH 166 (530)
Q Consensus 143 l~~y~~~i~~l~~~GI~p~vt--L~H 166 (530)
++=+++||++|.++||++|+. +.|
T Consensus 244 ~~efk~LV~~~H~~GI~VIlDvV~NH 269 (688)
T TIGR02100 244 VAEFKTMVRALHDAGIEVILDVVYNH 269 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCC
Confidence 455899999999999999996 445
No 157
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=26.10 E-value=1.7e+02 Score=37.46 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=47.7
Q ss_pred hhchHHHHHHHHHcCCCeEEeccc---------------CCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE--
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSIS---------------WPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT-- 163 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si~---------------W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt-- 163 (530)
+....+-+.-+++|||+++=+|=- +.+|.|.- | +.+=+++++++|+++||..|+.
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI---G-----GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 555778889999999999865533 33444443 3 2455889999999999999986
Q ss_pred ecCCC-----CchhHH
Q 009642 164 LFHWD-----LPQVLE 174 (530)
Q Consensus 164 L~H~~-----~P~wl~ 174 (530)
++|.. .|.|..
T Consensus 829 ~NH~~~~~~~n~w~~d 844 (1693)
T PRK14507 829 PNHMGVGGADNPWWLD 844 (1693)
T ss_pred ccccCCCccCCHHHHH
Confidence 56753 666654
No 158
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=25.78 E-value=1.6e+02 Score=25.76 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCeEEecc-cCCcc-ccCCCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWPRL-LPKGKISGGVNPLGVQFYNNLIDELIANGIKP 160 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~ri-~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p 160 (530)
++.++.|+++|++.+++|+ +-..- ..+.. + .....+...+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~--~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRII--N--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHH--S--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhh--c--CCCCHHHHHHHHHHHHHcCCCc
Confidence 8999999999999999999 44432 21110 0 1122366778999999999985
No 159
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=25.66 E-value=4.8e+02 Score=27.89 Aligned_cols=72 Identities=24% Similarity=0.270 Sum_probs=45.9
Q ss_pred chHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE-EecCCCCchhHHhhhCCCC
Q 009642 103 RYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFV-TLFHWDLPQVLEDEYGGFL 181 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~v-tL~H~~~P~wl~~~~ggw~ 181 (530)
...|-++.++++|++.+=| ....+.|-+. ...+.. ...+++-+.|.++||++.. |..-+..|.+ +.|++.
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~~---~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~la 103 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFGA---PPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFT 103 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCCC---ChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCC
Confidence 4689999999999998754 3345566541 111111 3367888889999999654 4433444444 237888
Q ss_pred Ch
Q 009642 182 SS 183 (530)
Q Consensus 182 ~~ 183 (530)
++
T Consensus 104 s~ 105 (382)
T TIGR02631 104 SN 105 (382)
T ss_pred CC
Confidence 75
No 160
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=25.27 E-value=2.9e+02 Score=29.20 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCeEEecc-cCC-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEecCCCCchhHHhhhCCCC
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWP-RLLPKGKISGGVNPLGVQFYNNLIDELIANGIK-PFVTLFHWDLPQVLEDEYGGFL 181 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~-p~vtL~H~~~P~wl~~~~ggw~ 181 (530)
+|.+++|+++|+|.+.+++ +-+ ++.-.- ....+. +-..+.++.+++.||. +.+.| =+++|.
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~~s~---~~~~~a~~~l~~~g~~~v~~dl-i~GlPg---------- 171 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVL--DRTHTP---GRAVAAAREARAAGFEHVNLDL-IYGTPG---------- 171 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCCH---HHHHHHHHHHHHcCCCcEEEEE-eccCCC----------
Confidence 6899999999999777777 433 222221 022233 4567889999999998 43443 345563
Q ss_pred ChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcccc
Q 009642 182 SSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNSIS 217 (530)
Q Consensus 182 ~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~~~ 217 (530)
++.+.|.+=.+.+.+.=-+.|......-||+...
T Consensus 172 --qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l 205 (375)
T PRK05628 172 --ESDDDWRASLDAALEAGVDHVSAYALIVEDGTAL 205 (375)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChH
Confidence 2344555555554443335665555555666443
No 161
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.77 E-value=1.2e+02 Score=30.07 Aligned_cols=61 Identities=11% Similarity=0.009 Sum_probs=40.8
Q ss_pred chhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 009642 99 DFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFV 162 (530)
Q Consensus 99 d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~v 162 (530)
....+++.-|++++.+|.++.++.-......+.. ...-...++.++++.+.+.++||+..+
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP---NVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4567788889999999999999864322111111 111134457788888999999997544
No 162
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=24.47 E-value=1.6e+02 Score=30.90 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChH
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSE 184 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~ 184 (530)
..-|++|.+.|++-.=+|+ +.|++ -+...+..+.++++.++++|+++||.. -|.-|.. -||. .+
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~-----~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~--l~~S-~~ 82 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE-----DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE--LNIS-LD 82 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc-----hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh--cCCC-hH
Confidence 3457888899988666654 34444 234578899999999999999999987 6777755 3443 33
Q ss_pred HHHHHHHH
Q 009642 185 IVKDFGDY 192 (530)
Q Consensus 185 ~~~~f~~y 192 (530)
.++.|.+.
T Consensus 83 ~l~~f~e~ 90 (360)
T COG3589 83 NLSRFQEL 90 (360)
T ss_pred HHHHHHHh
Confidence 34444443
No 163
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.84 E-value=2.5e+02 Score=27.65 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=40.1
Q ss_pred hchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE-ecCCCCch
Q 009642 102 HRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT-LFHWDLPQ 171 (530)
Q Consensus 102 ~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt-L~H~~~P~ 171 (530)
...++=|++++++|.+.+++... .+ |.+......-....+..+++.+.+.++|++..+= +.|++.|.
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g--~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~ 152 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVG--KT-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPG 152 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCC--CC-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCC
Confidence 44678889999999999876432 22 2210001111223455677777778999986663 45665553
No 164
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.83 E-value=7.5e+02 Score=24.96 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=59.7
Q ss_pred hhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCC
Q 009642 101 YHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGF 180 (530)
Q Consensus 101 y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw 180 (530)
-.+..+-++.+|+.|+. ++.+|+.+---|.. +..+. +++.++++.+.+.|.. .++| .| -.|.
T Consensus 113 ~~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~---~~~~~---~~~~~~~~~~~~~Ga~-~i~l---------~D-T~G~ 174 (274)
T cd07938 113 LERFEPVAELAKAAGLR-VRGYVSTAFGCPYE---GEVPP---ERVAEVAERLLDLGCD-EISL---------GD-TIGV 174 (274)
T ss_pred HHHHHHHHHHHHHCCCe-EEEEEEeEecCCCC---CCCCH---HHHHHHHHHHHHcCCC-EEEE---------CC-CCCc
Confidence 35566778999999985 67777666555666 66665 8899999999999986 3443 22 2465
Q ss_pred CChHHHHHHHHHHHHHHHHhcCcccEEEeccC
Q 009642 181 LSSEIVKDFGDYADFCFKTFGDRVKQWVTMAE 212 (530)
Q Consensus 181 ~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NE 212 (530)
..|. .+.++.+.+.+++++..-.+++-|-
T Consensus 175 ~~P~---~v~~lv~~l~~~~~~~~i~~H~Hnd 203 (274)
T cd07938 175 ATPA---QVRRLLEAVLERFPDEKLALHFHDT 203 (274)
T ss_pred cCHH---HHHHHHHHHHHHCCCCeEEEEECCC
Confidence 6654 4555566666677653333444443
No 165
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=23.72 E-value=2e+02 Score=28.02 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=34.2
Q ss_pred HHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 108 IKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 108 i~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
..++|++|++..=++=|=.| +.+. | -.+-+..++++||+|+++.
T Consensus 74 ~~mLkd~G~~~viiGHSERR-f~Et------d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERR-MKLA------D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEECcccCC-CCcc------H------HHHHHHHHHHCCCEEEEEE
Confidence 36899999998877766556 3322 1 4688899999999999999
No 166
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.69 E-value=3.1e+02 Score=28.65 Aligned_cols=74 Identities=22% Similarity=0.397 Sum_probs=50.0
Q ss_pred ccccchh--hchHHHHHHHHHcCCCeEEecc----cC-------CccccCCC-------CCCCCChHHHHHHHHHHHHHH
Q 009642 95 NVAIDFY--HRYKEDIKLMKETGLDSFRFSI----SW-------PRLLPKGK-------ISGGVNPLGVQFYNNLIDELI 154 (530)
Q Consensus 95 ~~a~d~y--~r~~eDi~l~k~lG~~~~R~si----~W-------~ri~P~~~-------~~g~~n~~gl~~y~~~i~~l~ 154 (530)
|+|-.++ ...++-|+.|+..++|.+.+-+ +| +++-..+. .+|.+.. +-++++++-++
T Consensus 9 D~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~ 85 (329)
T cd06568 9 DVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAA 85 (329)
T ss_pred eccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHH
Confidence 4444444 4477889999999999887766 23 33322110 0134555 44779999999
Q ss_pred HCCCeEEEEecCCCCchhHH
Q 009642 155 ANGIKPFVTLFHWDLPQVLE 174 (530)
Q Consensus 155 ~~GI~p~vtL~H~~~P~wl~ 174 (530)
++||++|--+ |+|....
T Consensus 86 ~rgI~vIPEi---D~PGH~~ 102 (329)
T cd06568 86 ERHITVVPEI---DMPGHTN 102 (329)
T ss_pred HcCCEEEEec---CCcHHHH
Confidence 9999988876 8887653
No 167
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=23.68 E-value=1.9e+02 Score=29.07 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=32.5
Q ss_pred hhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHH
Q 009642 100 FYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDEL 153 (530)
Q Consensus 100 ~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l 153 (530)
-....++||++++++|++-+=|++- -|+ |.+|.+. ..++++..
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L----~~d----g~vD~~~---~~~Li~~a 113 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVL----DVD----GHVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE----CCC----CCcCHHH---HHHHHHHh
Confidence 3567889999999999999999874 122 7899854 44666665
No 168
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.64 E-value=3.7e+02 Score=28.14 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCeEEecc-cCC-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCC
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWP-RLLPKGKISGG-VNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFL 181 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~ 181 (530)
+|.+++|+++|+|-+.++| +-+ .+.-.- |+ .+. +-..+.++.+++.|+..+-.=.=+++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~~~---~~~~~ai~~lr~~g~~~v~iDli~GlPg---------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIHSQ---KQIIKAIENAKKAGFENISIDLIYDTPL---------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCEEEEEeecCCCC----------
Confidence 6999999999999888887 554 333222 32 233 4577899999999998653323456663
Q ss_pred ChHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009642 182 SSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPN 214 (530)
Q Consensus 182 ~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~ 214 (530)
++.+.|.+-.+.+.+-=.+.|......=||+
T Consensus 162 --qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 --DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 2345555555555442234454444444444
No 169
>PRK09936 hypothetical protein; Provisional
Probab=23.40 E-value=5.9e+02 Score=26.32 Aligned_cols=99 Identities=17% Similarity=0.348 Sum_probs=60.4
Q ss_pred chHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCC
Q 009642 103 RYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLS 182 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~ 182 (530)
.|++=++.++.+|+++ +=+.|++.--+. . |.-+ .+..+.++...++||+.+|+|+- | |.|++... .+
T Consensus 39 qWq~~~~~~~~~G~~t--LivQWt~yG~~~-f-g~~~----g~La~~l~~A~~~Gl~v~vGL~~-D-p~y~q~~~---~d 105 (296)
T PRK09936 39 QWQGLWSQLRLQGFDT--LVVQWTRYGDAD-F-GGQR----GWLAKRLAAAQQAGLKLVVGLYA-D-PEFFMHQK---QD 105 (296)
T ss_pred HHHHHHHHHHHcCCcE--EEEEeeeccCCC-c-ccch----HHHHHHHHHHHHcCCEEEEcccC-C-hHHHHHHh---cC
Confidence 3677788999999998 456899982211 1 2222 67889999999999999999964 4 45544321 23
Q ss_pred hHHHH-HHHHHH-------HHHHHHhcCcccEEEeccCCc
Q 009642 183 SEIVK-DFGDYA-------DFCFKTFGDRVKQWVTMAEPN 214 (530)
Q Consensus 183 ~~~~~-~f~~ya-------~~~~~~~~d~V~~W~t~NEp~ 214 (530)
+...+ .+.+.+ +...++.+-.|+.|-+==|+.
T Consensus 106 ~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElD 145 (296)
T PRK09936 106 GAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELD 145 (296)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccc
Confidence 22222 233333 344444444556565554543
No 170
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=23.32 E-value=4.9e+02 Score=27.51 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=57.4
Q ss_pred hchHHHHHHHHHcCCCeEEecccC--CccccCCCCCC-CCChHHHHHHHHHHHHHHHCCCeE-EEEecCCCCchhHHhhh
Q 009642 102 HRYKEDIKLMKETGLDSFRFSISW--PRLLPKGKISG-GVNPLGVQFYNNLIDELIANGIKP-FVTLFHWDLPQVLEDEY 177 (530)
Q Consensus 102 ~r~~eDi~l~k~lG~~~~R~si~W--~ri~P~~~~~g-~~n~~gl~~y~~~i~~l~~~GI~p-~vtL~H~~~P~wl~~~~ 177 (530)
..=.|+++.+|++|++.+.++++= ...++.=...| .-+. +.--+.++.+++.||+. -+.+. +++|-|..+.
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~---~~rl~~i~~a~~aG~~~v~~g~i-~Gl~e~~~d~- 233 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDF---RYRLNTPERAAKAGMRKIGIGAL-LGLDDWRTDA- 233 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCH---HHHHHHHHHHHHcCCCeeceeEE-EeCchhHHHH-
Confidence 466899999999999999888832 33444310001 1122 33456788999999983 33322 3456554432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009642 178 GGFLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPN 214 (530)
Q Consensus 178 ggw~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~ 214 (530)
-..+..++.+-.+|.+ ....+.+|+.+
T Consensus 234 ---------~~~a~~l~~L~~~~~~-~~~sv~~~~l~ 260 (366)
T TIGR02351 234 ---------FFTAYHLRYLQKKYWK-TEISISVPRLR 260 (366)
T ss_pred ---------HHHHHHHHHHHHHcCC-CCccccccccc
Confidence 3344445555555554 34557888754
No 171
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.25 E-value=88 Score=29.11 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=41.8
Q ss_pred chhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 009642 99 DFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFV 162 (530)
Q Consensus 99 d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~v 162 (530)
......++-+++++.+|++.+++...+-...+.... ...-...++.++.+.+.+.++|+++.+
T Consensus 68 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 68 EALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDT-EENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSH-HHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCcccccccCCCH-HHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 446778999999999999999999764111111100 011122456778888888899988655
No 172
>PRK14567 triosephosphate isomerase; Provisional
Probab=22.97 E-value=2e+02 Score=29.05 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=34.3
Q ss_pred HHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEec
Q 009642 108 IKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLF 165 (530)
Q Consensus 108 i~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~ 165 (530)
..++|++|++..=++=|=.|..=.+ -| +.-.+-+..++++||+|++++-
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f~E-----td----~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLFAE-----SD----EDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCC-----CH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 3688999998877766433322111 12 4566788899999999999983
No 173
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=22.93 E-value=1.3e+02 Score=31.01 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCeEE-ecc-cC-----CccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 104 YKEDIKLMKETGLDSFR-FSI-SW-----PRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R-~si-~W-----~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
.+|.++.||++|++.+- .+. .- .++.|.. .+. +-+.+.++.+++.||++..++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~-----~t~---~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK-----LSS---DEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC-----CCH---HHHHHHHHHHHHcCCCceeeE
Confidence 47889999999999874 233 12 1222332 333 556799999999999988765
No 174
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=22.87 E-value=2.6e+02 Score=26.78 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccE
Q 009642 183 SEIVKDFGDYADFCFKTFGDRVKQ 206 (530)
Q Consensus 183 ~~~~~~f~~ya~~~~~~~~d~V~~ 206 (530)
.+..+...+|++.|-+++|.++-+
T Consensus 109 ~~~~~~~~~fl~~ve~~~g~~piI 132 (190)
T cd06419 109 KKSTQKLGLLVQLLEQHYNQSVII 132 (190)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEE
Confidence 355577777777777777765433
No 175
>PRK08508 biotin synthase; Provisional
Probab=22.77 E-value=1.7e+02 Score=29.75 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcCCCeEEecc-cCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 104 YKEDIKLMKETGLDSFRFSI-SWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si-~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
.+|.++.||++|++++-.++ .=++++|.-. ..-++ +..-+.++.+++.||++.-++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~--~~~~~---~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKIC--TTHTW---EERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCC--CCCCH---HHHHHHHHHHHHcCCeeccee
Confidence 48999999999999999988 3245676642 22233 445567778999999765443
No 176
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.62 E-value=1.7e+02 Score=29.21 Aligned_cols=62 Identities=6% Similarity=0.021 Sum_probs=40.2
Q ss_pred chhhchHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 009642 99 DFYHRYKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVT 163 (530)
Q Consensus 99 d~y~r~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt 163 (530)
..-.+++.-+++++++|.+.++++- .+..+... ....-...++.++++.+.+.++||+..+=
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 91 QGLEIMEKAIQLARDLGIRTIQLAG--YDVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEecC--cccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 3456788999999999999999852 11111110 01111234567778888899999976663
No 177
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=22.53 E-value=3e+02 Score=33.51 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=48.9
Q ss_pred CCcEEEEcCCCCCCcccccccccCChHHHHHHHHHHHHHHHHHHcCCceEEEEEeccccccccc---C-----CCccce-
Q 009642 421 NPAIYITENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIKEGVHVKGYYAWSFLDNFEWD---A-----GFTVGF- 491 (530)
Q Consensus 421 ~ppI~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~---~-----Gy~~rf- 491 (530)
..|++++|.|.+..+. .|. ++++. .++++-=-+.|=|.|..+|-=-.. + +|.--|
T Consensus 505 ~kP~i~~Ey~hamgn~---~g~---------~~~yw----~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g 568 (1021)
T PRK10340 505 PKPRILCEYAHAMGNG---PGG---------LTEYQ----NVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYG 568 (1021)
T ss_pred CCcEEEEchHhccCCC---CCC---------HHHHH----HHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCCC
Confidence 3469999998664321 111 23333 345555679999999999931110 0 122222
Q ss_pred -----------eEEEEeCCCCccccccchHHHHHHhhcCCCC
Q 009642 492 -----------GMVYVDHKDNLQRYPKDSFFWYKSFLAPPKS 522 (530)
Q Consensus 492 -----------GL~~VD~~~~~~R~pK~S~~~y~~ii~~~~~ 522 (530)
||+. ..|+||++++.||++.+--.+
T Consensus 569 ~~p~~~~f~~~Glv~------~dr~p~p~~~e~k~~~~pv~~ 604 (1021)
T PRK10340 569 DYPNNYNFCIDGLIY------PDQTPGPGLKEYKQVIAPVKI 604 (1021)
T ss_pred CCCCCcCcccceeEC------CCCCCChhHHHHHHhcceEEE
Confidence 4432 458899999999999875443
No 178
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=22.33 E-value=45 Score=26.83 Aligned_cols=20 Identities=40% Similarity=0.841 Sum_probs=16.5
Q ss_pred ccchhhchH--HHHHHHHHcCC
Q 009642 97 AIDFYHRYK--EDIKLMKETGL 116 (530)
Q Consensus 97 a~d~y~r~~--eDi~l~k~lG~ 116 (530)
-.|||..|+ +|.+.|+++|+
T Consensus 45 YadFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 45 YADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHHccChHHHHHHHHHcCC
Confidence 468887775 89999999996
No 179
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=22.31 E-value=5.5e+02 Score=27.28 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEecCCCCchhHHh
Q 009642 105 KEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIK-PFVTLFHWDLPQVLED 175 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~-p~vtL~H~~~P~wl~~ 175 (530)
-+.|..+.++|...+|+++ +|.++.+-..++.+.|++.|.. |+|.=.|||+-..|..
T Consensus 34 v~QI~~L~~aGceivRvav--------------p~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a 91 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAV--------------PDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA 91 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE---------------SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcC--------------CCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH
Confidence 4788999999999999986 4667777788999999988875 8999999999888865
No 180
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=22.17 E-value=1.1e+02 Score=33.09 Aligned_cols=54 Identities=26% Similarity=0.439 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCeEEec-------------c-cCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe--cCC
Q 009642 106 EDIKLMKETGLDSFRFS-------------I-SWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL--FHW 167 (530)
Q Consensus 106 eDi~l~k~lG~~~~R~s-------------i-~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL--~H~ 167 (530)
+-+..+|+||+++.=++ + .+.+|-|. .-.++..+++++++.++||+.|+.+ .|-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~--------~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~ 102 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPH--------FGTEEDFKELVEEAHKRGIKVILDLVFNHT 102 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcc--------cCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 66788999999987332 1 22233332 2235778999999999999999976 663
No 181
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.07 E-value=6.6e+02 Score=26.58 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=58.4
Q ss_pred chHHHHHHHHHcCCCeEEecccC--C----ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEecCCCCchhHHh
Q 009642 103 RYKEDIKLMKETGLDSFRFSISW--P----RLLPKGKISGGVNPLGVQFYNNLIDELIANGIK-PFVTLFHWDLPQVLED 175 (530)
Q Consensus 103 r~~eDi~l~k~lG~~~~R~si~W--~----ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~-p~vtL~H~~~P~wl~~ 175 (530)
.=.++++.||++|++.|-++++= . +|-|.+ ..-+. +.--+-|+.+++.||+ ....+. +.++-|..+
T Consensus 161 lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g---~~h~~---~~rl~~i~~a~~aG~~~v~~g~i-~Glge~~~d 233 (371)
T PRK09240 161 LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRG---PKRDF---EYRLETPERAGRAGIRKIGLGAL-LGLSDWRTD 233 (371)
T ss_pred CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCC---CCCCH---HHHHHHHHHHHHcCCCeeceEEE-ecCCccHHH
Confidence 34788999999999999998843 2 233332 12233 3445678888999996 533332 245544433
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCc
Q 009642 176 EYGGFLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPN 214 (530)
Q Consensus 176 ~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~ 214 (530)
+-.++..++.+-..|++ +..=+.+|+.+
T Consensus 234 ----------~~~~a~~l~~L~~~~~~-~~~sv~~~~l~ 261 (371)
T PRK09240 234 ----------ALMTALHLRYLQRKYWQ-AEYSISFPRLR 261 (371)
T ss_pred ----------HHHHHHHHHHHHHhCCC-CceeeecCccc
Confidence 45566666777767766 33446677755
No 182
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=22.06 E-value=70 Score=28.21 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCcccccccccCChHHHHHHHHHHHHHHHHHHcC
Q 009642 424 IYITENGVADAKDVEQAQARKDDLRIKCYQEHLWYLLEAIKEG 466 (530)
Q Consensus 424 I~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hL~~v~~Ai~dG 466 (530)
.+|+|.||+. |..+.+|-+....+++.||...
T Consensus 2 r~~iE~GmG~-----------DlhGqD~TkAA~RAv~DAI~~n 33 (113)
T PF09585_consen 2 RLFIEMGMGN-----------DLHGQDYTKAAVRAVRDAISHN 33 (113)
T ss_pred eEEEEecccc-----------cccCCcHHHHHHHHHHHHHhhc
Confidence 5899999986 6788889999999999998643
No 183
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.97 E-value=3.7e+02 Score=28.50 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCeEEecc-cCC-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCC
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWP-RLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLS 182 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~ 182 (530)
+|.++.|+++|+|-+.++| +=+ ++.-.- ....+. +-..+.|+.+++.|++++-.-.-+++|.
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l--~r~~~~---~~~~~ai~~~~~~G~~~v~~dli~Glpg----------- 170 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRL--GRIHGP---DEAKRAAKLAQGLGLRSFNLDLMHGLPD----------- 170 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCeEEEEeecCCCC-----------
Confidence 5999999999999887777 333 222221 012232 4456789999999998753323456664
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009642 183 SEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNS 215 (530)
Q Consensus 183 ~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~ 215 (530)
++.+.+.+-.+.+.+.=-+.|..+...=||+.
T Consensus 171 -qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 -QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred -CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23455666666666544577777777767764
No 184
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=21.73 E-value=4.8e+02 Score=23.73 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=39.5
Q ss_pred hchHHHHHHHHHcCCCeEEeccc-CCcc-ccCCCCCCCCChHHHHHHHHHHHHHHHCC-CeEEEEe
Q 009642 102 HRYKEDIKLMKETGLDSFRFSIS-WPRL-LPKGKISGGVNPLGVQFYNNLIDELIANG-IKPFVTL 164 (530)
Q Consensus 102 ~r~~eDi~l~k~lG~~~~R~si~-W~ri-~P~~~~~g~~n~~gl~~y~~~i~~l~~~G-I~p~vtL 164 (530)
..-++.++.|+++|++.+.+|+. ++.= ...-. ...+. +.+.+.|+.++++| +.+.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~--~~~~~---~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN--RGHTV---EDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc--CCCCH---HHHHHHHHHHHHhCCcceEEeE
Confidence 33478999999999999999994 6432 21110 12233 77889999999999 6554433
No 185
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.68 E-value=7.4e+02 Score=24.50 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=34.7
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPF 161 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~ 161 (530)
++|-+++++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||+..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLAR---LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhc---cCCCH---HHHHHHHHHHHHcCCcee
Confidence 78999999999999987754211111111 11233 346688888999999964
No 186
>PRK15492 triosephosphate isomerase; Provisional
Probab=21.66 E-value=2.2e+02 Score=28.86 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=34.6
Q ss_pred HHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 108 IKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 108 i~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
..++|++|++..=++=|=.|..=. .-| +.-.+-+..++++||+|+||.
T Consensus 87 a~mLkd~G~~~viiGHSERR~~f~-----Etd----~~v~~Kv~~a~~~gl~pIvCi 134 (260)
T PRK15492 87 PLMLKEIGTQLVMIGHSERRHKFG-----ETD----QEENAKVLAALKHDFTTLLCV 134 (260)
T ss_pred HHHHHHcCCCEEEECccccccccC-----cch----HHHHHHHHHHHHCCCEEEEEc
Confidence 468999999987776644443211 122 456678899999999999998
No 187
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=21.60 E-value=2e+02 Score=29.54 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=56.6
Q ss_pred hHHHHHHHH---HcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEE----------------E
Q 009642 104 YKEDIKLMK---ETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIK-PFV----------------T 163 (530)
Q Consensus 104 ~~eDi~l~k---~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~-p~v----------------t 163 (530)
.++|++.|| ++|.+. +.... -||. +-|.++++.+++.||+ |++ .
T Consensus 162 ~~~dl~~Lk~K~~aGA~~---------~iTQ~----~Fd~---~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~ 225 (296)
T PRK09432 162 AQADLINLKRKVDAGANR---------AITQF----FFDV---ESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFAD 225 (296)
T ss_pred HHHHHHHHHHHHHcCCCe---------eeccc----ccch---HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHH
Confidence 456666555 566632 33332 2565 6688999999999855 322 2
Q ss_pred ecCCCCchhHHhhhCCCCCh-H-HHHHHHHHHHHHHHHhcCc-c--cEEEeccCCccc
Q 009642 164 LFHWDLPQVLEDEYGGFLSS-E-IVKDFGDYADFCFKTFGDR-V--KQWVTMAEPNSI 216 (530)
Q Consensus 164 L~H~~~P~wl~~~~ggw~~~-~-~~~~f~~ya~~~~~~~~d~-V--~~W~t~NEp~~~ 216 (530)
+.+-.+|.|+.++.-..... + ..+.=.+||....+++-+. | -+..|+|-+...
T Consensus 226 ~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~gv~GvH~yt~n~~~~~ 283 (296)
T PRK09432 226 MTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREGVKDFHFYTLNRAELT 283 (296)
T ss_pred ccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEecCCChHHH
Confidence 46689999999886665433 2 2334445565555554332 2 233357766544
No 188
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=21.59 E-value=88 Score=31.73 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCCCcc
Q 009642 407 GIKDFMLYIKSKYNNPAIYITENGVADAKD 436 (530)
Q Consensus 407 GL~~~L~~i~~rY~~ppI~ITENG~~~~~~ 436 (530)
||--++.. .+|+.| ++|||.|+-..+.
T Consensus 185 gl~g~~~k--~~~g~P-~lLTEHGIY~RER 211 (268)
T PF11997_consen 185 GLLGALAK--YRYGRP-FLLTEHGIYTRER 211 (268)
T ss_pred HHHHHHHH--HHhCCC-EEEecCCccHHHH
Confidence 67766643 467775 9999999977653
No 189
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=21.59 E-value=2.7e+02 Score=30.34 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCCeEEecc-cCC-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCch
Q 009642 104 YKEDIKLMKETGLDSFRFSI-SWP-RLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQ 171 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~ 171 (530)
-+|.+++|+++|++.+.+++ +=+ .+.-.- ....+. +-..+.++.+++.||..+-.-.-+++|.
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l--~r~~~~---~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAV--NRIQPF---EFTFALVEAARELGFTSINIDLIYGLPK 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 46999999999999877777 332 111111 122233 4567889999999995443333445663
No 190
>PRK01060 endonuclease IV; Provisional
Probab=21.29 E-value=4.4e+02 Score=26.16 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=37.2
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKP 160 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p 160 (530)
+++-++.++++|++.+=+.+.-++.+.. +..+. +..+++-+.+.++|++.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~----~~~~~---~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR----KPLEE---LNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC----CCCCH---HHHHHHHHHHHHcCCCC
Confidence 7889999999999999998876655433 23455 33556667788999984
No 191
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=20.95 E-value=3.4e+02 Score=30.86 Aligned_cols=93 Identities=13% Similarity=0.036 Sum_probs=56.3
Q ss_pred hHHHHHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCch----hHHhh---
Q 009642 104 YKEDIKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQ----VLEDE--- 176 (530)
Q Consensus 104 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~----wl~~~--- 176 (530)
.++|++++++.|++.+|+..+-+.+ +-....++..+++|....+++..-.-|. .+.+-
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~ 162 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV---------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKE 162 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHH
Confidence 5678899999999999998765543 1234566777777777776664433341 11110
Q ss_pred -------------hCCCCChHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009642 177 -------------YGGFLSSEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNS 215 (530)
Q Consensus 177 -------------~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~ 215 (530)
-.|-..|.. ..+.++.+.++++ ..-..++-|-..+
T Consensus 163 l~~~Gad~I~i~Dt~G~~~P~~---~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 163 LEEMGCDSICIKDMAGLLTPYA---AYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HHHcCCCEEEECCcCCCcCHHH---HHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 235555543 3445555556664 3456677776654
No 192
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=20.94 E-value=2.3e+02 Score=28.46 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=31.9
Q ss_pred HHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 108 IKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 108 i~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
.+++|++|++.+=++=|=.|.. +++. -+.-.+-+..++++||+|++|+
T Consensus 79 ~~mLkd~G~~~viiGHSERR~~--------f~Et-d~~v~~K~~~a~~~gl~pIvCi 126 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSERRQY--------FGET-DELVNKKVKAALKAGLTPILCV 126 (250)
T ss_pred HHHHHHCCCCEEEeCcccccCc--------cCcC-HHHHHHHHHHHHHCCCEEEEEc
Confidence 4689999998877766433322 2221 0334455555999999999998
No 193
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=20.76 E-value=3.2e+02 Score=29.60 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCeEEecc-cCC-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCeEE-EEecCCCCch
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWP-RLLPKGKISGG-VNPLGVQFYNNLIDELIANGIKPF-VTLFHWDLPQ 171 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~~~P~ 171 (530)
+|.+++|+++|++.+.+++ +=+ ++.-.- |+ .+. +-..+.|+.|++.||..+ +.| =+++|.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~~~---~~~~~ai~~l~~~g~~~i~~dl-I~GlP~ 204 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHAL---HRPQKR---ADVHQALEWIRAAGFPILNIDL-IYGIPG 204 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHh---CCCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC
Confidence 6899999999999777777 432 233222 22 233 557789999999999864 343 345663
No 194
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.64 E-value=3.9e+02 Score=28.10 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCeEEecc-cCC-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCC
Q 009642 105 KEDIKLMKETGLDSFRFSI-SWP-RLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLS 182 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~ 182 (530)
+|.+++|+++|+|.+.+++ +=+ ++.-.- ....+. +-+.+.++.++++|+.++-.-.=+++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l--~R~~~~---~~~~~ai~~lr~~G~~~v~~dlI~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL--NRTHTI---QDSKEAINLLHKNGIYNISCDFLYCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCCH---HHHHHHHHHHHHcCCCcEEEEEeecCCC-----------
Confidence 6999999999999777776 332 333222 022333 4577899999999997443333446663
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccEEEeccCCcc
Q 009642 183 SEIVKDFGDYADFCFKTFGDRVKQWVTMAEPNS 215 (530)
Q Consensus 183 ~~~~~~f~~ya~~~~~~~~d~V~~W~t~NEp~~ 215 (530)
++.+.|.+=.+.+.+-=.+.|..+...=||+.
T Consensus 167 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 -LKLKDLDEVFNFILKHKINHISFYSLEIKEGS 198 (353)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCC
Confidence 33455555555544332355555555545553
No 195
>PTZ00333 triosephosphate isomerase; Provisional
Probab=20.46 E-value=2.6e+02 Score=28.18 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=34.3
Q ss_pred HHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEec
Q 009642 109 KLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLF 165 (530)
Q Consensus 109 ~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~ 165 (530)
++++++|++..=++=|=-|..=.++ | +.-.+-+..++++||+|++++-
T Consensus 83 ~mL~d~G~~~viiGHSERR~~f~Et-----d----~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTILGHSERRQYFGET-----N----EIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEECcccccCcCCCC-----c----HHHHHHHHHHHHCCCEEEEEcC
Confidence 7899999988777664333221111 2 4567888999999999999983
No 196
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.32 E-value=2.9e+02 Score=29.37 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHH
Q 009642 144 QFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCF 197 (530)
Q Consensus 144 ~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~ 197 (530)
+..+.+++.++++|+-.=+..+|-.++.-+.++||+-.....++.-.++++.+-
T Consensus 117 ~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le 170 (360)
T PRK00366 117 ERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILE 170 (360)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999865444566676667776643
No 197
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=20.29 E-value=3.5e+02 Score=30.33 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCCeEEecc--cCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCC
Q 009642 105 KEDIKLMKETGLDSFRFSI--SWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLS 182 (530)
Q Consensus 105 ~eDi~l~k~lG~~~~R~si--~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~ 182 (530)
+|.+++|+++|++.+-+++ --.++.-.-. +| .+. +-..+.++.++++|++..+.| =+++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rg-ht~---~~v~~Ai~~lr~~G~~v~~~L-M~GLPg----------- 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTK-RG-HTV---RDVVEATRLLRDAGLKVVYHI-MPGLPG----------- 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CC-CCH---HHHHHHHHHHHHcCCeEEEEe-ecCCCC-----------
Confidence 6999999999999888887 2233332210 02 232 445678889999999855554 346663
Q ss_pred hHHHHHHHHHHHHHHH--Hhc-CcccEEEeccCCcccccccccccccCCC
Q 009642 183 SEIVKDFGDYADFCFK--TFG-DRVKQWVTMAEPNSISIGGYAIGVYAPG 229 (530)
Q Consensus 183 ~~~~~~f~~ya~~~~~--~~~-d~V~~W~t~NEp~~~~~~~y~~G~~~Pg 229 (530)
++.+.+.+=++.+++ .++ |.|+.+.+.=.|+.....-|..|.|.|.
T Consensus 269 -qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 -SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred -CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 224555666666665 343 6777777776777655555667777664
No 198
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=20.11 E-value=3e+02 Score=31.88 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCchhHHhhhCCCCChHHHHHHHHHHHHHHHH
Q 009642 145 FYNNLIDELIANGIKPFVTLFHWDLPQVLEDEYGGFLSSEIVKDFGDYADFCFKT 199 (530)
Q Consensus 145 ~y~~~i~~l~~~GI~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~~~~~ 199 (530)
....+++.++++|+-.=+..+|-.++.-+..+||. .....++.-.+|++.|-+.
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~~ 264 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKL 264 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHHC
Confidence 34459999999999999999999999999998875 4446667777777766543
No 199
>PLN02561 triosephosphate isomerase
Probab=20.07 E-value=2.7e+02 Score=28.12 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=34.3
Q ss_pred HHHHHHcCCCeEEecccCCccccCCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEe
Q 009642 108 IKLMKETGLDSFRFSISWPRLLPKGKISGGVNPLGVQFYNNLIDELIANGIKPFVTL 164 (530)
Q Consensus 108 i~l~k~lG~~~~R~si~W~ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 164 (530)
.+++|++|++..=++=|=.|..= +.-| +.-++-+..++++||+|++|+
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f-----~Etd----~~v~~Kv~~al~~gl~pIvCv 128 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALL-----GESN----EFVGDKVAYALSQGLKVIACV 128 (253)
T ss_pred HHHHHHcCCCEEEECcccccCcc-----CCCh----HHHHHHHHHHHHCcCEEEEEc
Confidence 46889999988766654333321 2223 556788899999999999998
Done!