BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009645
         (530 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K3C|A Chain A, Structural And Functional Characterization Of Tm Ix Of The
           Nhe1 Isoform Of The Na+H+ EXCHANGER
          Length = 33

 Score = 30.8 bits (68), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 20/26 (76%)

Query: 257 AYLSYVMADLFQLSGILTVFFCGIVM 282
           +Y++Y+ A+LF LSGI+ +   G+VM
Sbjct: 3   SYMAYLSAELFHLSGIMALIASGVVM 28


>pdb|2HTG|A Chain A, Structural And Functional Characterization Of Tm Vii Of
           The Nhe1 Isoform Of The Na+H+ EXCHANGER
          Length = 28

 Score = 29.3 bits (64), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 18/21 (85%)

Query: 172 LLYSLVFGEGVVNDATSIVLF 192
           LL+ LVFGE ++NDA ++VL+
Sbjct: 5   LLHILVFGESLLNDAVTVVLY 25


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,241,473
Number of Sequences: 62578
Number of extensions: 391172
Number of successful extensions: 1045
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 4
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)