Query 009645
Match_columns 530
No_of_seqs 278 out of 1741
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:37:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965 Sodium/hydrogen exchan 100.0 1.6E-81 3.5E-86 647.8 28.3 502 8-523 22-553 (575)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 2.1E-70 4.5E-75 588.8 41.2 466 18-525 6-480 (559)
3 KOG1966 Sodium/hydrogen exchan 100.0 2.2E-72 4.8E-77 575.6 9.1 455 22-519 43-506 (670)
4 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 7.1E-53 1.5E-57 453.5 41.8 397 30-446 7-412 (525)
5 COG0025 NhaP NhaP-type Na+/H+ 100.0 1.2E-50 2.7E-55 424.7 40.1 399 23-445 8-409 (429)
6 PRK05326 potassium/proton anti 100.0 7E-45 1.5E-49 396.6 39.6 386 25-449 10-398 (562)
7 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 8.5E-44 1.8E-48 384.4 39.1 397 19-438 11-436 (810)
8 COG3263 NhaP-type Na+/H+ and K 100.0 3.7E-41 8.1E-46 333.5 32.3 385 19-447 4-394 (574)
9 KOG4505 Na+/H+ antiporter [Ino 100.0 1E-31 2.2E-36 257.9 26.8 381 35-437 27-430 (467)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 1.8E-35 3.8E-40 309.1 -2.2 372 32-440 7-380 (380)
11 COG0475 KefB Kef-type K+ trans 100.0 1.8E-26 3.9E-31 240.4 35.8 374 22-443 7-389 (397)
12 PLN03159 cation/H(+) antiporte 100.0 1.4E-26 3E-31 260.8 35.4 349 27-400 49-403 (832)
13 PRK03562 glutathione-regulated 100.0 3.7E-26 7.9E-31 251.0 36.0 366 22-432 6-374 (621)
14 TIGR00932 2a37 transporter, mo 100.0 6.2E-26 1.3E-30 226.3 29.3 268 32-321 3-272 (273)
15 PRK03659 glutathione-regulated 99.9 9.5E-25 2.1E-29 239.4 37.6 353 28-429 12-368 (601)
16 PRK10669 putative cation:proto 99.9 1.3E-24 2.8E-29 237.5 36.9 368 25-436 10-386 (558)
17 COG4651 RosB Kef-type K+ trans 99.7 1.4E-14 3E-19 138.7 25.6 364 23-435 8-385 (408)
18 KOG1650 Predicted K+/H+-antipo 99.6 9.8E-14 2.1E-18 154.9 18.1 374 36-443 37-422 (769)
19 PRK14853 nhaA pH-dependent sod 99.1 8.6E-08 1.9E-12 99.2 27.1 261 81-383 65-344 (423)
20 TIGR00773 NhaA Na+/H+ antiport 98.4 1.5E-05 3.2E-10 81.3 17.5 256 81-383 55-325 (373)
21 PRK09560 nhaA pH-dependent sod 97.4 0.014 3.1E-07 59.9 18.9 270 80-398 61-345 (389)
22 PRK09561 nhaA pH-dependent sod 97.2 0.031 6.8E-07 57.4 18.9 266 81-397 62-342 (388)
23 PRK14855 nhaA pH-dependent sod 97.1 0.043 9.3E-07 57.1 18.7 255 81-383 66-364 (423)
24 PRK14856 nhaA pH-dependent sod 97.1 0.04 8.6E-07 57.6 18.2 269 81-398 71-390 (438)
25 COG0786 GltS Na+/glutamate sym 97.1 0.33 7.1E-06 49.8 24.0 110 29-152 13-133 (404)
26 PF06965 Na_H_antiport_1: Na+/ 96.8 0.0052 1.1E-07 62.9 8.9 261 80-383 57-332 (378)
27 PRK14854 nhaA pH-dependent sod 96.8 0.11 2.5E-06 53.2 18.2 259 80-383 58-329 (383)
28 PF13593 DUF4137: SBF-like CPA 96.6 0.75 1.6E-05 46.8 22.9 34 76-109 26-59 (313)
29 COG3004 NhaA Na+/H+ antiporter 96.1 0.5 1.1E-05 47.1 17.3 270 86-400 70-352 (390)
30 PF03601 Cons_hypoth698: Conse 95.9 2.2 4.8E-05 43.1 22.8 114 44-168 24-140 (305)
31 PF03616 Glt_symporter: Sodium 95.2 4.7 0.0001 42.0 28.9 83 31-118 13-101 (368)
32 PRK03659 glutathione-regulated 94.9 0.83 1.8E-05 50.9 16.3 73 81-160 265-337 (601)
33 PRK03562 glutathione-regulated 94.9 0.79 1.7E-05 51.2 16.0 71 82-159 269-339 (621)
34 PRK10669 putative cation:proto 94.8 1.1 2.4E-05 49.5 16.7 72 82-160 277-348 (558)
35 TIGR00698 conserved hypothetic 93.5 10 0.00022 38.9 27.3 114 45-168 30-146 (335)
36 PF03956 DUF340: Membrane prot 93.2 0.41 8.9E-06 44.9 8.1 129 51-197 3-136 (191)
37 PF01758 SBF: Sodium Bile acid 93.1 2 4.4E-05 40.0 12.8 107 85-199 2-111 (187)
38 COG2855 Predicted membrane pro 93.0 1.9 4.1E-05 43.7 12.9 139 44-197 35-176 (334)
39 PLN03159 cation/H(+) antiporte 92.9 1.3 2.8E-05 51.3 13.2 71 83-160 324-396 (832)
40 PF06826 Asp-Al_Ex: Predicted 92.9 1.8 4E-05 39.7 11.7 85 45-133 22-109 (169)
41 COG0385 Predicted Na+-dependen 92.4 14 0.0003 37.4 18.3 151 82-239 39-191 (319)
42 COG2431 Predicted membrane pro 91.8 4.3 9.3E-05 39.8 13.1 88 49-153 109-201 (297)
43 COG0475 KefB Kef-type K+ trans 91.6 2 4.2E-05 45.3 11.7 72 80-158 271-343 (397)
44 TIGR00808 malonate_madM malona 91.3 7 0.00015 36.6 13.3 82 44-130 38-128 (254)
45 COG1346 LrgB Putative effector 90.9 15 0.00034 35.1 17.0 73 91-174 74-149 (230)
46 PF05982 DUF897: Domain of unk 90.3 3 6.6E-05 42.0 11.0 141 46-197 176-323 (327)
47 PF03812 KdgT: 2-keto-3-deoxyg 90.3 22 0.00047 35.8 21.2 129 40-171 4-136 (314)
48 PF05145 AmoA: Putative ammoni 87.6 19 0.00041 36.7 14.9 107 28-148 159-267 (318)
49 PRK03818 putative transporter; 87.4 8.2 0.00018 42.5 13.0 77 49-133 33-115 (552)
50 TIGR03082 Gneg_AbrB_dup membra 86.9 23 0.0005 31.9 14.2 104 30-147 4-109 (156)
51 KOG3826 Na+/H+ antiporter [Ino 86.4 1.6 3.5E-05 41.6 5.8 80 82-167 159-238 (252)
52 TIGR03802 Asp_Ala_antiprt aspa 86.0 8 0.00017 42.7 12.0 121 30-169 15-144 (562)
53 PRK12460 2-keto-3-deoxyglucona 85.2 7.1 0.00015 39.3 10.0 58 86-150 197-254 (312)
54 PF03390 2HCT: 2-hydroxycarbox 83.6 24 0.00051 37.1 13.3 152 21-180 246-405 (414)
55 PF03616 Glt_symporter: Sodium 83.4 48 0.001 34.5 15.7 90 29-124 225-322 (368)
56 COG0798 ACR3 Arsenite efflux p 83.2 57 0.0012 33.2 18.0 175 48-239 19-202 (342)
57 TIGR00841 bass bile acid trans 80.9 63 0.0014 32.3 19.7 70 86-164 13-85 (286)
58 PRK04972 putative transporter; 80.6 20 0.00043 39.6 12.3 111 46-169 410-527 (558)
59 PRK12460 2-keto-3-deoxyglucona 80.4 69 0.0015 32.4 17.8 144 43-195 7-154 (312)
60 COG3493 CitS Na+/citrate sympo 80.3 22 0.00048 36.6 11.3 136 27-169 270-410 (438)
61 PRK04972 putative transporter; 79.7 47 0.001 36.7 14.8 118 31-167 18-144 (558)
62 TIGR00210 gltS sodium--glutama 79.5 87 0.0019 33.0 26.8 34 254-287 225-263 (398)
63 PF03601 Cons_hypoth698: Conse 78.8 24 0.00052 35.7 11.3 35 250-284 3-41 (305)
64 COG0786 GltS Na+/glutamate sym 78.8 71 0.0015 33.3 14.5 161 22-192 219-393 (404)
65 PRK04288 antiholin-like protei 77.8 70 0.0015 30.9 23.2 34 97-130 83-116 (232)
66 PRK05326 potassium/proton anti 77.3 13 0.00028 41.1 9.7 32 82-113 275-306 (562)
67 TIGR00832 acr3 arsenical-resis 76.7 94 0.002 31.8 21.6 137 85-229 47-195 (328)
68 PRK04125 murein hydrolase regu 75.8 46 0.00099 29.6 10.8 109 22-133 8-117 (141)
69 COG2985 Predicted permease [Ge 75.8 24 0.00051 37.6 10.3 136 17-168 361-510 (544)
70 TIGR00210 gltS sodium--glutama 75.3 1.1E+02 0.0025 32.1 16.2 156 28-192 222-390 (398)
71 TIGR00698 conserved hypothetic 74.6 53 0.0011 33.7 12.5 36 250-285 7-47 (335)
72 TIGR00783 ccs citrate carrier 71.4 82 0.0018 32.4 12.8 144 27-179 185-337 (347)
73 TIGR01625 YidE_YbjL_dupl AspT/ 71.3 55 0.0012 29.5 10.5 104 47-163 22-133 (154)
74 PRK10711 hypothetical protein; 70.7 84 0.0018 30.4 12.1 33 97-129 78-110 (231)
75 COG2855 Predicted membrane pro 66.0 60 0.0013 33.1 10.5 150 265-445 33-182 (334)
76 TIGR03802 Asp_Ala_antiprt aspa 65.3 94 0.002 34.4 12.9 105 48-165 417-528 (562)
77 PF05684 DUF819: Protein of un 64.5 1.9E+02 0.0041 30.3 28.4 86 44-135 23-108 (378)
78 PRK03818 putative transporter; 64.4 76 0.0017 35.0 11.9 105 49-167 403-515 (552)
79 TIGR00400 mgtE Mg2+ transporte 63.8 82 0.0018 33.8 11.8 16 181-196 428-443 (449)
80 PRK01658 holin-like protein; V 63.1 1E+02 0.0022 26.7 10.7 108 23-133 6-114 (122)
81 COG2985 Predicted permease [Ge 56.1 94 0.002 33.3 10.1 92 75-171 52-147 (544)
82 TIGR00844 c_cpa1 na(+)/h(+) an 54.9 72 0.0016 36.6 9.7 74 252-325 21-94 (810)
83 PRK01821 hypothetical protein; 54.7 1.5E+02 0.0032 26.0 10.7 108 23-133 11-119 (133)
84 TIGR00946 2a69 he Auxin Efflux 53.4 1.5E+02 0.0033 29.9 11.3 45 80-124 210-254 (321)
85 COG3180 AbrB Putative ammonia 49.0 3.2E+02 0.007 28.2 14.4 109 26-148 190-300 (352)
86 PF03818 MadM: Malonate/sodium 48.6 97 0.0021 23.1 6.2 19 44-62 37-55 (60)
87 KOG1650 Predicted K+/H+-antipo 44.8 60 0.0013 37.3 7.3 73 81-161 310-382 (769)
88 PF03812 KdgT: 2-keto-3-deoxyg 44.0 1.8E+02 0.0039 29.4 9.6 37 85-121 201-237 (314)
89 PF04172 LrgB: LrgB-like famil 43.7 3E+02 0.0065 26.3 10.8 33 99-131 69-101 (215)
90 TIGR00793 kdgT 2-keto-3-deoxyg 42.8 1.1E+02 0.0025 30.7 7.9 38 84-121 200-237 (314)
91 TIGR00932 2a37 transporter, mo 41.9 3.4E+02 0.0074 26.5 11.8 61 259-325 6-66 (273)
92 PF03547 Mem_trans: Membrane t 41.7 4.1E+02 0.0089 27.3 16.0 16 271-286 8-23 (385)
93 TIGR00946 2a69 he Auxin Efflux 41.6 3.8E+02 0.0083 27.0 25.0 109 269-399 181-290 (321)
94 COG3329 Predicted permease [Ge 41.1 78 0.0017 31.7 6.4 147 38-193 209-363 (372)
95 KOG2718 Na+-bile acid cotransp 41.1 1.4E+02 0.003 31.1 8.5 107 85-196 117-223 (371)
96 COG3493 CitS Na+/citrate sympo 40.7 4.5E+02 0.0097 27.5 23.5 61 82-149 112-172 (438)
97 PF00999 Na_H_Exchanger: Sodiu 39.1 16 0.00034 38.0 1.5 102 45-160 233-338 (380)
98 PF11286 DUF3087: Protein of u 35.1 96 0.0021 28.3 5.5 67 97-166 5-71 (165)
99 PF05684 DUF819: Protein of un 34.6 2E+02 0.0043 30.1 8.7 46 272-325 243-288 (378)
100 PF06123 CreD: Inner membrane 34.6 3.3E+02 0.007 29.1 10.3 38 25-64 303-340 (430)
101 PF06610 DUF1144: Protein of u 31.7 1.7E+02 0.0038 25.6 6.3 59 181-239 81-140 (143)
102 COG5336 Uncharacterized protei 29.6 2.6E+02 0.0057 23.6 6.8 23 212-234 46-68 (116)
103 PRK09903 putative transporter 29.5 5.5E+02 0.012 25.8 10.9 138 53-200 175-314 (314)
104 PF13194 DUF4010: Domain of un 29.4 5E+02 0.011 24.7 15.7 67 126-194 7-73 (211)
105 PF02667 SCFA_trans: Short cha 28.6 7.6E+02 0.016 26.5 12.7 54 250-321 21-74 (453)
106 PRK11715 inner membrane protei 27.6 4.6E+02 0.0099 28.0 10.0 38 26-65 310-347 (436)
107 COG3329 Predicted permease [Ge 25.6 7.2E+02 0.016 25.2 17.6 97 46-158 16-115 (372)
108 PF06912 DUF1275: Protein of u 25.3 5.6E+02 0.012 23.9 10.1 27 173-199 3-30 (209)
109 TIGR02230 ATPase_gene1 F0F1-AT 25.2 2E+02 0.0043 24.0 5.4 34 28-61 54-89 (100)
110 COG1682 TagG ABC-type polysacc 25.1 6.7E+02 0.015 24.7 13.8 67 163-229 98-166 (263)
111 TIGR00680 kdpA K+-transporting 22.7 7.2E+02 0.016 27.3 10.3 26 338-363 483-508 (563)
112 PF06946 Phage_holin_5: Phage 22.2 3.3E+02 0.0071 22.3 5.9 33 32-66 17-54 (93)
113 PF09527 ATPase_gene1: Putativ 21.8 2.9E+02 0.0063 19.8 5.3 35 28-64 12-46 (55)
114 PRK10263 DNA translocase FtsK; 21.4 6.3E+02 0.014 31.0 10.4 206 263-509 22-256 (1355)
115 COG5336 Uncharacterized protei 21.2 1.9E+02 0.004 24.4 4.4 35 26-62 52-86 (116)
116 COG1380 Putative effector of m 21.0 5.6E+02 0.012 22.3 9.6 35 99-133 81-115 (128)
117 TIGR00659 conserved hypothetic 20.6 7.7E+02 0.017 23.8 20.4 33 98-130 78-110 (226)
118 KOG3762 Predicted transporter 20.4 1.1E+03 0.025 26.1 11.3 59 216-285 375-433 (618)
119 TIGR02454 CbiQ_TIGR cobalt ABC 20.3 6.7E+02 0.015 22.9 9.4 19 153-171 111-129 (198)
120 PF03788 LrgA: LrgA family; I 20.2 4.5E+02 0.0098 21.5 6.7 35 93-127 59-93 (96)
121 PRK01844 hypothetical protein; 20.0 4.1E+02 0.0089 20.7 5.8 15 219-233 11-25 (72)
122 PF15179 Myc_target_1: Myc tar 20.0 2E+02 0.0042 26.7 4.7 30 212-241 19-48 (197)
No 1
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-81 Score=647.80 Aligned_cols=502 Identities=45% Similarity=0.682 Sum_probs=428.7
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHHHHHhcCCCcc---cccccChhHH
Q 009645 8 VSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTR--WMNQSVTALAFGLCTATVIILTTNGKIS---DILLFDEDLF 82 (530)
Q Consensus 8 ~~~~~~~~~~~~~~~i~~~~~ll~~~~~~~~l~~~~~--~lp~~~~~ll~Gil~G~~~~~~~~~~~~---~~~~~~~~~~ 82 (530)
......++||++.+++++++.+|++|++.+|+++++| ++||++..+++|+++|.++++...++.+ +...++||.|
T Consensus 22 ~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~f 101 (575)
T KOG1965|consen 22 SDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLF 101 (575)
T ss_pred cccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHH
Confidence 3344466789999999999999999999999999765 8999999999999999999998888877 6778999999
Q ss_pred HHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHH
Q 009645 83 FICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTL 162 (530)
Q Consensus 83 ~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~ 162 (530)
+.++||||+|++||++++++|+||+.+++.++++||++++.+++.+++++.......++++.+|+++||++||||||+|+
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvL 181 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVL 181 (575)
T ss_pred HHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHH
Confidence 99999999999999999999999999999999999999999999999988554444589999999999999999999999
Q ss_pred HHhcccCC-chhhhhhhhhhhhhhHHHHHHHHHHHHHhh-ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009645 163 QVLNQEDT-PLLYSLVFGEGVVNDATSIVLFNAIQKFSV-HVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELY 240 (530)
Q Consensus 163 ~il~~~~~-~~l~~ll~gEs~lND~~aivlf~~~~~~~~-~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~ 240 (530)
+|++|+++ |++|++++|||++|||++||+|++++.+.. +.+.....+.++.|++.+.+|+.+|++.|.+.++++|+++
T Consensus 182 aIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~ 261 (575)
T KOG1965|consen 182 AIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLY 261 (575)
T ss_pred HHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 589999999999999999999999999876 4444455678999999999999999999999999999998
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc
Q 009645 241 FGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMD 320 (530)
Q Consensus 241 ~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~ 320 (530)
. ++.+..|.+++++++|.+|++||.+|+|||+++++||++|+||+++|.++++|.++||+|+++++++|+++|.|+|+.
T Consensus 262 l-~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~ 340 (575)
T KOG1965|consen 262 L-RRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLS 340 (575)
T ss_pred h-cCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 7 488999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCCCCccceeeeEecCCchhhHHHHhhcc
Q 009645 321 ALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSP-IDKIGFKQQVTIWWAGLMRGAVSVALAYN 399 (530)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~Gl~RGava~aLa~~ 399 (530)
+...++|.+. .+.+.....++++++|++.++|++++.|+.||.+ .++++.|+|.+|||+|++|||+++|||..
T Consensus 341 ~f~~~k~~~~------~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~ 414 (575)
T KOG1965|consen 341 AFDFQKHVYK------SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALG 414 (575)
T ss_pred Hhcccceeee------chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhh
Confidence 9888877653 2344556677899999999999999999998754 56699999999999995599999999997
Q ss_pred ccccCCCCCCcchhHHHHHHHhhhhHhhhhhhhhHHHHHHHhCCCCCCCcCCCC--------------CCC------ccc
Q 009645 400 KFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQPREESSEISS--------------PKS------SSA 459 (530)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~--------------~~~------~~i 459 (530)
...+.+++ .++++.++|+.+|++|+++.|.++.|+++++.++.++..++++ +++ +..
T Consensus 415 ~~~~~~~~---~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 491 (575)
T KOG1965|consen 415 DFTDSPHT---GGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAADEVDESWRLEPGVEFYLVTKLGVLSLTSSA 491 (575)
T ss_pred hccccccc---cccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccccccccccchhhhcccccccccccccccccccccc
Confidence 64433221 5689999999999999999999999999999987655442110 000 001
Q ss_pred cccccccc--ccccccccCCCCCCCCCCCCccchhccCCccccchhHhhhcccccccccCCCCCCC
Q 009645 460 LLPLLANG--QDLASELDSVGGGISIRRPSSLTMLITKPTSTVHYYWRKFDNAVMRPIFGGGGEES 523 (530)
Q Consensus 460 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~d~~~~~p~~~~~~~~~ 523 (530)
+.+..... ..-+|+.. .+..+++.+.+....++++..|.+||++|+..+++.++++|.++
T Consensus 492 ~i~~~~~~~~~~~~e~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (575)
T KOG1965|consen 492 YITILQLRQAELFDEPTR----SSDSRFLLSLGFFQLTYTSLTHLYGRIFSRTSMRHIFGQRGLVP 553 (575)
T ss_pred CcchhhhhhhhhccccCC----ccCccccccccceeeeecccccccccccCcchhcccccccCccc
Confidence 11111110 11112211 22334556677788899999999999999999999999965443
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=2.1e-70 Score=588.79 Aligned_cols=466 Identities=29% Similarity=0.424 Sum_probs=396.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhh
Q 009645 18 APVHSVTLFVALVSACIVIGHLLQKT-RWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGF 96 (530)
Q Consensus 18 ~~~~~i~~~~~ll~~~~~~~~l~~~~-~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~ 96 (530)
+....+.+++.+.+++.+.-|+.+|+ +++|+++..+++|+++|++....... +...+++++|+.++||||+|++|+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~---~~~~l~~~lf~~~~LPpIlFe~g~ 82 (559)
T TIGR00840 6 QSPYEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHI---DPPTLDSSYFFLYLLPPIVLDAGY 82 (559)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCC---ccCCcCHHHHHHHHHHHHHHHHHh
Confidence 34445666666777777777777664 46999999999999999876654321 235789999999999999999999
Q ss_pred cCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC--CCCCCHHHHHHHhcccccccHHHHHHHhcccCCc-hh
Q 009645 97 QVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFG--LTFWDQGDFLALGAILSATDTVCTLQVLNQEDTP-LL 173 (530)
Q Consensus 97 ~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~--~~~l~~~~alllGailsaTdpv~v~~il~~~~~~-~l 173 (530)
++|+|.|++|+++++.+|++|++++++++|..+|++++..+ ..+++|.+|+++||++|||||+++++++++.+.| ++
T Consensus 83 ~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L 162 (559)
T TIGR00840 83 FMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKL 162 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcch
Confidence 99999999999999999999999999999999987755332 2367999999999999999999999999999987 79
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhh-c---cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchH
Q 009645 174 YSLVFGEGVVNDATSIVLFNAIQKFSV-H---VTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDRE 249 (530)
Q Consensus 174 ~~ll~gEs~lND~~aivlf~~~~~~~~-~---~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e 249 (530)
+++++|||++||++|+++|.++.++.. + .+..+....+..++...+||+++|+++|++.++++|+.. +.+..|
T Consensus 163 ~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~---~~~~~e 239 (559)
T TIGR00840 163 YIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTH---HIRQIE 239 (559)
T ss_pred hhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhH
Confidence 999999999999999999999988764 1 122233445567777788899999999999999999873 344678
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhh-hhhh
Q 009645 250 VALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDM-EKWK 328 (530)
Q Consensus 250 ~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~-~~~~ 328 (530)
..++++++|++|.+||.+|+||++|+++||++++||.+.|.+++++...+++|+.+++++|+++|+++|+++... ..|+
T Consensus 240 ~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~ 319 (559)
T TIGR00840 240 PLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWN 319 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 999999999999999999999999999999999999988999888999999999999999999999999987543 2342
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCC
Q 009645 329 IVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQ 408 (530)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~ 408 (530)
+...++.+++++++|++++++++++.|..+ ..++++|||++++|+| +||++++++|+... ...
T Consensus 320 ---------~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~---~~~~~~~e~~il~w~G-lRGaVa~aLAl~l~----~~~ 382 (559)
T TIGR00840 320 ---------WAFVVATLSFCVIYRVLGVRTLSWITNEFR---PVEIPYKDQLVIFYAG-LRGAVAFALALLLD----EKI 382 (559)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCChhhhhheeeec-cccHHHHHHHHhCC----CCC
Confidence 233345567789999999999999988765 4689999999999999 59999999998752 234
Q ss_pred CcchhHHHHHHHhhhhHhhhhhhhhHHHHHHHhCCCCCCCcCCCCCCCcccccccccccccccccccCCCCCCCCCCCCc
Q 009645 409 RPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQPREESSEISSPKSSSALLPLLANGQDLASELDSVGGGISIRRPSS 488 (530)
Q Consensus 409 ~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (530)
.+.++.++++|+.+|++|+++||.+++|++++++.+++++.+++.+|+ +|.+.+||...+.||+| |+
T Consensus 383 ~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~l~~~~~~~~~~~e~--~~~~~~~~~~~~ie~~~----g~------- 449 (559)
T TIGR00840 383 FPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISKTKINEE--LHDREFDHLLPGIEDIC----GQ------- 449 (559)
T ss_pred cchHHHHHHHHHeeehHHHHHHHhhHHHHHHHhCCCCCccchhhHHHH--HHHHHHHHHHhHHHHHh----hh-------
Confidence 678999999999999999999999999999999998877666666777 99999999999999987 44
Q ss_pred cchhccCCccccchhHhhhcccccccccCCCCCCCCC
Q 009645 489 LTMLITKPTSTVHYYWRKFDNAVMRPIFGGGGEESPP 525 (530)
Q Consensus 489 ~~~~~~~~~~~~~~~w~~~d~~~~~p~~~~~~~~~~~ 525 (530)
..+++.++.|++||+||+||++.++..+.+|
T Consensus 450 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 480 (559)
T TIGR00840 450 ------IGHDRAIDKLNGFDIKYLLKPLIRRNSPKSS 480 (559)
T ss_pred ------cchHHHHHHHHHHhhhhChHhhcCCccccch
Confidence 3567888999999999999999998777655
No 3
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-72 Score=575.62 Aligned_cols=455 Identities=28% Similarity=0.471 Sum_probs=401.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-ccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCCh
Q 009645 22 SVTLFVALVSACIVIGHLLQK-TRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKK 100 (530)
Q Consensus 22 ~i~~~~~ll~~~~~~~~l~~~-~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~ 100 (530)
.+.+++++..++.+.=|+..+ ++.+||++.++++|+++|.++....... ...++++.||.++||||+++|||.|+.
T Consensus 43 vi~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~---~~~L~s~vFFlyLLPPIvlDAGYfMp~ 119 (670)
T KOG1966|consen 43 VITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA---PFFLESDVFFLYLLPPIVLDAGYFMPN 119 (670)
T ss_pred hhHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc---cccccccchhhhhcCHHHhcccccCcc
Confidence 456666677777777777766 4559999999999999999888654332 245788999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC--CCHHHHHHHhcccccccHHHHHHHhcccCCc-hhhhhh
Q 009645 101 KQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTF--WDQGDFLALGAILSATDTVCTLQVLNQEDTP-LLYSLV 177 (530)
Q Consensus 101 ~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~--l~~~~alllGailsaTdpv~v~~il~~~~~~-~l~~ll 177 (530)
|+|+.|+++|+++|++||+++++.++...|.+ ...|+.+ .+..+-|+||+++||.|||+|+++++|.++- -++.++
T Consensus 120 r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i-~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~V 198 (670)
T KOG1966|consen 120 RAFFENLGTILLFAVVGTIWNAFTIGASLYAI-SLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIV 198 (670)
T ss_pred HHHHhccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeee
Confidence 99999999999999999999999988777664 4444434 6689999999999999999999999999866 599999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhh-c---cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 009645 178 FGEGVVNDATSIVLFNAIQKFSV-H---VTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALM 253 (530)
Q Consensus 178 ~gEs~lND~~aivlf~~~~~~~~-~---~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e~~l~ 253 (530)
+|||++||++.+|+|+.+.++.. + ....+....+.+|+.+.+||+++|+++|++.++..|+. ++.+..|+.+.
T Consensus 199 FGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft---~~vrviePvfi 275 (670)
T KOG1966|consen 199 FGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFT---KHVRVLEPVFI 275 (670)
T ss_pred ehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhh---cceeeecchhh
Confidence 99999999999999999999876 2 22333444577888889999999999999999999977 57778899999
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhh-hhhhhhcC
Q 009645 254 ILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDM-EKWKIVKG 332 (530)
Q Consensus 254 l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~-~~~~~~~~ 332 (530)
+.++|++|+.||.+|+|||+|+.+||+.|++|...|.++++..+++++.++++...|+++|+++|+++... .+|+
T Consensus 276 f~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd---- 351 (670)
T KOG1966|consen 276 FLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWD---- 351 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceee----
Confidence 99999999999999999999999999999999999999999999999999999999999999999998665 3464
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcch
Q 009645 333 SPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKN 412 (530)
Q Consensus 333 ~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~ 412 (530)
+.++.+.++.|++.|+++++.++++.|.+| ..+++.++|++|+++|| |||+|++|..... .+..|.+
T Consensus 352 -----~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr---~~k~~~~DQfimsyGGL-RGAiaF~LV~lid----~~~vp~K 418 (670)
T KOG1966|consen 352 -----FAFICLTLVFCLIYRAIGVVVLTWFLNKFR---MVKLEFVDQFIMSYGGL-RGAIAFGLVVLID----GAKVPAK 418 (670)
T ss_pred -----hhhhhhHHHHHHHHHHHHhhhhhhhhhhhh---eeeccccceeeeecCCc-chhhheeEEEEec----cccCCcc
Confidence 345567778999999999999999999987 47999999999999998 9999999998752 2568899
Q ss_pred hHHHHHHHhhhhHhhhhhhhhHHHHHHHhCCCCCCCcCCCCCCCcccccccccccccccccccCCCCCCCCCCCCccchh
Q 009645 413 AIMITSTITIVLFSNVVFGLLTKPLVRLMLQPREESSEISSPKSSSALLPLLANGQDLASELDSVGGGISIRRPSSLTML 492 (530)
Q Consensus 413 ~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (530)
++++++|+.||+||+++||+|++|+.++|+.++++..+++..|+ ++.+.+||.+.+.||++ |+
T Consensus 419 ~~Fvttti~VIfFTVflQGiTIkplvk~L~Vk~~~~~~~~m~e~--i~~~~~dhlm~gIEDi~----G~----------- 481 (670)
T KOG1966|consen 419 NMFVTTTIAVIFFTVFLQGITIKPLVKFLKVKRKNKRDPTMNEE--IYNRLLDHLMAGIEDIA----GQ----------- 481 (670)
T ss_pred cceEeeeeEEEeeeeeecccchHHHHHHHccccccccCchhhHH--HHHHHHHHHHHHHHHHh----cc-----------
Confidence 99999999999999999999999999999999988888888888 99999999999999987 43
Q ss_pred ccCCccccchhHhhhcccccccccCCC
Q 009645 493 ITKPTSTVHYYWRKFDNAVMRPIFGGG 519 (530)
Q Consensus 493 ~~~~~~~~~~~w~~~d~~~~~p~~~~~ 519 (530)
.++++.++.|++||++|+||++.++
T Consensus 482 --~gh~~~rdk~~~fn~kylrp~L~r~ 506 (670)
T KOG1966|consen 482 --KGHYYWRDKFERFNNKYLRPLLMRH 506 (670)
T ss_pred --cccchhhhhHHHHHhhhchHHHhhh
Confidence 4578888899999999999999996
No 4
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=7.1e-53 Score=453.54 Aligned_cols=397 Identities=20% Similarity=0.324 Sum_probs=318.4
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHH
Q 009645 30 VSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFII 109 (530)
Q Consensus 30 l~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~ 109 (530)
++.+.....+ .++.++|.+++++++|+++|+.... ....++++.++.++||+++|++|+++|++++|||+++
T Consensus 7 ~~~~~~~~~l-~~r~~lP~~v~lil~Gi~lg~~~~~-------~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~ 78 (525)
T TIGR00831 7 VMLATAVAVT-VKFIRLPYPIALILAGLLLGLAGLL-------PEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRP 78 (525)
T ss_pred HHHHHHHHHH-hcccCCCHHHHHHHHHHHHHhcccc-------CCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3333334444 4456699999999999999964221 1256888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCCc-hhhhhhhhhhhhhhHHH
Q 009645 110 INLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTP-LLYSLVFGEGVVNDATS 188 (530)
Q Consensus 110 il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~~-~l~~ll~gEs~lND~~a 188 (530)
++.++++++++++++++..+|++. +++|..|+++||++|||||+++.+++++.+.| |+.++++|||++||+++
T Consensus 79 i~~la~~~vlit~~~v~~~~~~~~------~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~a 152 (525)
T TIGR00831 79 IALIAFLLVVVTTVVVGFSLNWIL------GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAA 152 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHH
Confidence 999999999999999998888754 89999999999999999999999999999988 79999999999999999
Q ss_pred HHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhc
Q 009645 189 IVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQ 268 (530)
Q Consensus 189 ivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg 268 (530)
+++|.++.+...+.+..+.......+++.+++|+++|+++|++..++.|+. .+++..+..++++++|++|++||.+|
T Consensus 153 lvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~---~~~~~~~~~l~l~~~~~~y~lAe~lg 229 (525)
T TIGR00831 153 LVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK---IDDPLVEIALTILAPFAGFLLAERFH 229 (525)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999887765222234455677888999999999999999998877654 34566788999999999999999999
Q ss_pred cchhHHHHHHHHHhcccccc-cccccchhHHHHHHHHHHHhhhhhhhhhhcccchhh--hhhhhhcCCCc-hHH---HHH
Q 009645 269 LSGILTVFFCGIVMSHYTWH-NITESSRVTTKHTFATLSFISETFIFLYVGMDALDM--EKWKIVKGSPG-TSV---AVS 341 (530)
Q Consensus 269 ~Sgilav~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~--~~~~~~~~~~~-~~~---~~~ 341 (530)
.||++|+++||++++|+.+. +.+++.+...+++|+.+++++|+++|+++|++++.. +.|........ ..+ ...
T Consensus 230 ~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (525)
T TIGR00831 230 FSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNA 309 (525)
T ss_pred CCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999998876 667777888999999999999999999999998753 22321100000 011 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhcccccc-CCCCCCcchhHHHHHHH
Q 009645 342 STLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTS-SGHTQRPKNAIMITSTI 420 (530)
Q Consensus 342 ~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~-~~~~~~~~~~~i~~~t~ 420 (530)
.++...+...|++.++. ...++..++.+.+++||++.+++|+| +||++++|+|+..+.. .+..+.+.++.++..++
T Consensus 310 ~~i~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~r~~~v~~w~G-~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~ 386 (525)
T TIGR00831 310 FVIYPVMTYVRFLWTMK--PFSNRFLKKKPMEFGTRWKHVVSWAG-LRGAIPLALALSFPNQLLSGMAFPARYELVFLAA 386 (525)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhhcccCCCChhhHHHheecc-chHHHHHHHHHHccccccCCCCCchHHHHHHHHH
Confidence 23334455667654433 33343333345678999999999999 6999999999876532 22246788999999999
Q ss_pred hhhhHhhhhhhhhHHHHHHHhCCCCC
Q 009645 421 TIVLFSNVVFGLLTKPLVRLMLQPRE 446 (530)
Q Consensus 421 ~vVl~T~~v~g~~~~~l~~~l~~~~~ 446 (530)
.+|++|+++||.++||+.|+++..+.
T Consensus 387 ~vVl~TllvqG~tlp~l~r~l~~~~~ 412 (525)
T TIGR00831 387 GVILFSLLVQGISLPIFVKRKFVSEH 412 (525)
T ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCC
Confidence 99999999999999999999997653
No 5
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-50 Score=424.68 Aligned_cols=399 Identities=23% Similarity=0.296 Sum_probs=333.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHH
Q 009645 23 VTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQ 102 (530)
Q Consensus 23 i~~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~ 102 (530)
+.....++.++...+.+.+| .++|+....++.|++.|+....... .....++|.+..+++|+++|++|+|+|+++
T Consensus 8 ~~~~~lil~l~~~~~~~~~~-l~~~~i~~~ll~g~i~g~~~l~~~~----~~~~~~~el~~~l~l~ilLf~~g~~l~~~~ 82 (429)
T COG0025 8 LFLLLLILLLGLLVSVLAGR-LLLPEIPLLLLLGLLGGPPGLNLIS----PDLELDPELFLVLFLAILLFAGGLELDLRE 82 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhhhhhcccc----ccccCChHHHHHHHHHHHHHHhHhcCCHHH
Confidence 33344444555556666655 5599999999999999965443211 124678888999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCCc-hhhhhhhhhh
Q 009645 103 FFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTP-LLYSLVFGEG 181 (530)
Q Consensus 103 ~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~~-~l~~ll~gEs 181 (530)
+||+++++..++++++++++++++...|+++| ++++..|+++||++|||||+++.+++++.+.| |+.++++|||
T Consensus 83 l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL~gES 157 (429)
T COG0025 83 LRRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGES 157 (429)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999875 89999999999999999999999999999998 7999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCchHHHHHHHHHHHH
Q 009645 182 VVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGR-HSTDREVALMILMAYLS 260 (530)
Q Consensus 182 ~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~-~~~~~e~~l~l~~~~l~ 260 (530)
++||++++++|.+..+...+....+..+....+++.+.+|+++|.+.|++..++.++...++ .++..+..+++..++.+
T Consensus 158 l~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~ 237 (429)
T COG0025 158 LLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAA 237 (429)
T ss_pred HhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 99999999999999888763222235667889999999999999999999999999986422 13456789999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHhcccccccccc-cchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCchHHH
Q 009645 261 YVMADLFQLSGILTVFFCGIVMSHYTWHNITE-SSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVA 339 (530)
Q Consensus 261 ~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~~~~~ 339 (530)
|.+||.+|.||++|++++|++++++...+.++ +.|.+.+++|+.+++++|.++|+++|++++....+.. .+.
T Consensus 238 ~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-------~~~ 310 (429)
T COG0025 238 YLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-------GLL 310 (429)
T ss_pred HHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-------hHH
Confidence 99999999999999999999998554545554 4478899999999999999999999999976553321 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcchhHHHHHH
Q 009645 340 VSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITST 419 (530)
Q Consensus 340 ~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~~~i~~~t 419 (530)
...++...++++|++++++..+..+ ++.+...+|||+.+++|+| |||++++++|...+..... +.++.+...+
T Consensus 311 ~~l~~~~~~~v~R~~~V~~~~~~~~---~~~~~~~~~~~~~~l~w~G-~RG~vsla~al~~p~~~~~---~~~~~i~~i~ 383 (429)
T COG0025 311 GLLVALVAVLLARPLWVFLSLKGSN---LKLRDPLPWRERLFLSWAG-PRGVVSLALALLIPLELPG---PARELILFIV 383 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc---ccccCCCCHHHHHHHhhcc-cccHHHHHHHHHchhhccc---hhhhHHHHHH
Confidence 5566677899999999999887654 1234678999999999999 7999999999886532221 6789999999
Q ss_pred HhhhhHhhhhhhhhHHHHHHHhCCCC
Q 009645 420 ITIVLFSNVVFGLLTKPLVRLMLQPR 445 (530)
Q Consensus 420 ~~vVl~T~~v~g~~~~~l~~~l~~~~ 445 (530)
..+|++|+++||.+++++.+++...+
T Consensus 384 ~~vIl~Sl~v~g~t~~~l~~~~~~~~ 409 (429)
T COG0025 384 FLVILFSLLVQGLTLPPLAKKLEVSE 409 (429)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhccCc
Confidence 99999999999999999999988744
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=7e-45 Score=396.65 Aligned_cols=386 Identities=20% Similarity=0.225 Sum_probs=308.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHH
Q 009645 25 LFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFF 104 (530)
Q Consensus 25 ~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~ 104 (530)
.+.++++++.+.+.+.+| .++|..++++++|+++|+......+..+ . ...+.+..+++++++|++|+++|++.+|
T Consensus 10 ~~~~ll~l~~~~~~l~~r-~~~P~ll~~il~GillGp~~lg~i~~~~---~-~~~~~i~~l~L~~iLF~~Gl~~~~~~l~ 84 (562)
T PRK05326 10 IGALLLLLSILASRLSSR-LGIPSLLLFLAIGMLAGEDGLGGIQFDN---Y-PLAYLVGNLALAVILFDGGLRTRWSSFR 84 (562)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhCccccCCcccCc---H-HHHHHHHHHHHHHHHHcCccCCCHHHHH
Confidence 344555666666666665 4699999999999999974332111000 0 0124678899999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccC--Cc-hhhhhhhhhh
Q 009645 105 QNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQED--TP-LLYSLVFGEG 181 (530)
Q Consensus 105 ~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~--~~-~l~~ll~gEs 181 (530)
+++++++.++..|+++++++++..+++++ +++|..|+++|+++++|||+++.+++++.+ .+ ++++++++||
T Consensus 85 ~~~~~~~~la~~gv~~t~~~~g~~~~~l~------g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS 158 (562)
T PRK05326 85 PALGPALSLATLGVLITAGLTGLFAHWLL------GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIES 158 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhh
Confidence 99999999999999999988888888887 899999999999999999999999999998 66 7999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHH
Q 009645 182 VVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSY 261 (530)
Q Consensus 182 ~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~ 261 (530)
++||+++++++.++.++....+....+..+..++..+++++++|+++|++..++.++.. .+.+..+..+++++++++|
T Consensus 159 ~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~--~~~~~~~~i~~l~~~l~~~ 236 (562)
T PRK05326 159 GSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIA--LPAEGLYPILVLAGALLIF 236 (562)
T ss_pred hcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHHH
Confidence 99999999999988877652111122334667888899999999999999999888763 1234456788899999999
Q ss_pred HHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCchHHHHH
Q 009645 262 VMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVS 341 (530)
Q Consensus 262 ~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~~~~~~~ 341 (530)
.+||.+|.||++|+|++|++++|... ..+...+++++.+++++++++|+++|+.++.....+. .+...
T Consensus 237 ~~a~~lg~Sg~la~~iaGl~l~n~~~-----~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-------~~~~l 304 (562)
T PRK05326 237 ALTAALGGSGFLAVYLAGLVLGNRPI-----RHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-------ALPAL 304 (562)
T ss_pred HHHHHHCCcHHHHHHHHHHHHhCCcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHH
Confidence 99999999999999999999996542 3445678899999999999999999999865442211 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcchhHHHHHHHh
Q 009645 342 STLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTIT 421 (530)
Q Consensus 342 ~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~~~i~~~t~~ 421 (530)
.+.+++++++|+++++.... ..+++|||+.+++|+| +||++++++|..... ...+..+.++.+++.
T Consensus 305 ~i~~~l~~vaR~l~v~l~~~---------~~~~~~~e~~~i~~~g-~RG~v~i~lA~~~~~----~~~~~~~~~~~~~~~ 370 (562)
T PRK05326 305 LLALFLILVARPLAVFLSLL---------PFRFNLREKLFISWVG-LRGAVPIVLATFPMM----AGLPNAQLIFNVVFF 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHc---------cCCCCHhhhheeeeec-chhHHHHHHHHHHHH----cCCCchhhhhhhhhe
Confidence 23344678999998886542 3478999999999999 699999999976432 234556788899999
Q ss_pred hhhHhhhhhhhhHHHHHHHhCCCCCCCc
Q 009645 422 IVLFSNVVFGLLTKPLVRLMLQPREESS 449 (530)
Q Consensus 422 vVl~T~~v~g~~~~~l~~~l~~~~~~~~ 449 (530)
+|++|+++||.+++|+.|+++.+++++.
T Consensus 371 vvl~S~~i~g~tl~~~a~~l~l~~~~~~ 398 (562)
T PRK05326 371 VVLVSLLLQGTTLPWAARKLGVVVPPEA 398 (562)
T ss_pred eeHHHHHHHHhhHHHHHHHcCCCCCCCC
Confidence 9999999999999999999999765443
No 7
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=8.5e-44 Score=384.44 Aligned_cols=397 Identities=15% Similarity=0.133 Sum_probs=303.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhH---HHHHhhHHHhhhhh
Q 009645 19 PVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDL---FFICLLPPIIFNAG 95 (530)
Q Consensus 19 ~~~~i~~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~---~~~i~L~~ilF~aG 95 (530)
....++.+.+++++..+++.+++++.++|+++.++++|+++||......+.. . ...+..+ +.++.|++++|.+|
T Consensus 11 ~~l~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~--~-~g~~d~i~leIteIvL~I~LFa~G 87 (810)
T TIGR00844 11 AHVAYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPL--S-WGNTDSITLEISRILLCLQVFAVS 87 (810)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChh--h-cccchHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777888899999978889999999999999998654322111 0 1111112 66789999999999
Q ss_pred hcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhc---ccCCc-
Q 009645 96 FQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLN---QEDTP- 171 (530)
Q Consensus 96 ~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~---~~~~~- 171 (530)
+++++++++++++.+..++++++.++++++++++|++++ +++|..|+++||+++||||+++.++++ ..+.|
T Consensus 88 l~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-----GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~ 162 (810)
T TIGR00844 88 VELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-----GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPG 162 (810)
T ss_pred HhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCCh
Confidence 999999999999999999999999999999999998854 899999999999999999999999998 34577
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHhh-c-cCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--
Q 009645 172 LLYSLVFGEGVVNDATSIVLFNAIQKFSV-H-VTP-DTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHST-- 246 (530)
Q Consensus 172 ~l~~ll~gEs~lND~~aivlf~~~~~~~~-~-~~~-~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~-- 246 (530)
++++++.+||++||++|++++.+...+.. . .+. ....+.+..+++.+++|+++|+++|++.+++.++... ++..
T Consensus 163 rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~r-r~~i~~ 241 (810)
T TIGR00844 163 HLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEG-KNIIDR 241 (810)
T ss_pred HHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccch
Confidence 79999999999999999999987766553 1 111 1112346789999999999999999999999998752 2322
Q ss_pred chHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhh
Q 009645 247 DREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEK 326 (530)
Q Consensus 247 ~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~ 326 (530)
+....+.+++++++|..++.+|.||++|+|+||++++|..+. ..+.....+++.++.+++.++|+++|+.++....
T Consensus 242 esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~----~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l 317 (810)
T TIGR00844 242 ESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWF----AQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDF 317 (810)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccch----hhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhc
Confidence 233567788899999999999999999999999999987542 1222345689999999999999999999864321
Q ss_pred hhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCC-
Q 009645 327 WKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSG- 405 (530)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~- 405 (530)
.+. ......+..+++.++++++.|...++.+..+. +...+|+|+.+++|.| |||..|+..+.....+..
T Consensus 318 ~~~--~l~~~~w~~ilLaL~LifVrRPpaVlll~~li-------~~~~s~rErlFigWFG-pRGIGSIyyl~~A~~~~~~ 387 (810)
T TIGR00844 318 NNG--DIGLDVWRLIILSLVVIFLRRIPAVLILKPLI-------PDIKSWREAMFIGHFG-PIGVGAVFAAILSKSQLES 387 (810)
T ss_pred ccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccCCCHHHHHHheeec-cccHHHHHHHHHHHHhhhc
Confidence 000 00011233445556677899988777543322 3456999999999999 799999887755322111
Q ss_pred -CCC---------------CcchhHHHHHHHhhhhHhhhhhhhhHHHHH
Q 009645 406 -HTQ---------------RPKNAIMITSTITIVLFSNVVFGLLTKPLV 438 (530)
Q Consensus 406 -~~~---------------~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~ 438 (530)
... ....+.++..|.++|+.|+++||.+++|+.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l~ 436 (810)
T TIGR00844 388 HLTDEETPLNVTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVIM 436 (810)
T ss_pred ccCcccccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 000 001457899999999999999999999975
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-41 Score=333.45 Aligned_cols=385 Identities=20% Similarity=0.256 Sum_probs=321.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccCh----hHHHHHhhHHHhhhh
Q 009645 19 PVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDE----DLFFICLLPPIIFNA 94 (530)
Q Consensus 19 ~~~~i~~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~----~~~~~i~L~~ilF~a 94 (530)
+...+++...+++...++...+..+...|--+..+.+||+.| .++... +++|. .....++|.+|+|++
T Consensus 4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG------~dGlg~--I~fdNy~~Ay~vg~lALaiILfdg 75 (574)
T COG3263 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAG------VDGLGG--IEFDNYPFAYMVGNLALAIILFDG 75 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcC------CCcccc--cccCccHHHHHHHHHHHHHHhhcC
Confidence 344455555455555555555555567999999999999999 444432 33333 245578999999999
Q ss_pred hhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCCc-hh
Q 009645 95 GFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTP-LL 173 (530)
Q Consensus 95 G~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~~-~l 173 (530)
|+..+.+.+|...++.+.+|.+|++++...++..++|++ +++|.+++++||++.+||.++|.+++++.+.. |+
T Consensus 76 G~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll------~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv 149 (574)
T COG3263 76 GFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL------NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERV 149 (574)
T ss_pred ccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhh
Confidence 999999999999999999999999999999999999998 99999999999999999999999999988865 89
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhh-ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 009645 174 YSLVFGEGVVNDATSIVLFNAIQKFSV-HVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVAL 252 (530)
Q Consensus 174 ~~ll~gEs~lND~~aivlf~~~~~~~~-~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e~~l 252 (530)
.+.++-||.-||.+|+.+.-.+..+.. +.++.++. .+..|+.++..|.++|...|++..++.+|.. -+....+.+
T Consensus 150 ~stLEiESGtNDPmAvfLTitlieli~~get~l~~~-~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n---Ld~GL~pil 225 (574)
T COG3263 150 ASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWG-FLLGFLQQFGLGLLLGLGGGKLLLQLINRIN---LDSGLYPIL 225 (574)
T ss_pred hhhEEeecCCCCceeeehhHHHHHHHhccccccCHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---cccchhHHH
Confidence 999999999999999999988887776 32223333 3445999999999999999999999999873 345567899
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcC
Q 009645 253 MILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKG 332 (530)
Q Consensus 253 ~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~ 332 (530)
.++..++.|.+++.+|.||++|++.||+..+|.. -..|+...++++-+++++...+|..+|+.+.+.+.|.+
T Consensus 226 ~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~-----i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~i--- 297 (574)
T COG3263 226 ALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRP-----IRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPI--- 297 (574)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCc-----chhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHh---
Confidence 9999999999999999999999999999999554 46778889999999999999999999999988887764
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcch
Q 009645 333 SPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKN 412 (530)
Q Consensus 333 ~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~ 412 (530)
.+.-..+.+.+++++|.+.||... .+.+++++|+.+++|.|| |||+++.+|..... ...+..
T Consensus 298 ----avPailL~l~mifvaRP~aV~l~l---------~Pfrf~~~Ek~fvSWvGL-RGAv~IilAifpm~----aglena 359 (574)
T COG3263 298 ----AIPAILLSLWMIFVARPLAVFLGL---------IPFRFNRREKLFVSWVGL-RGAVPIILAIFPMM----AGLENA 359 (574)
T ss_pred ----hHHHHHHHHHHHHHHhHHHHHHhh---------cccccCccchheeehhhc-ccchhhhHhhhHHh----cCCccc
Confidence 344455667788999999988653 235789999999999998 99999999987543 345677
Q ss_pred hHHHHHHHhhhhHhhhhhhhhHHHHHHHhCCCCCC
Q 009645 413 AIMITSTITIVLFSNVVFGLLTKPLVRLMLQPREE 447 (530)
Q Consensus 413 ~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~ 447 (530)
+.++..++.+|+.|.++||.++++..++++....+
T Consensus 360 ~l~FNvAF~VVLvSlliQG~tl~~~a~~l~~i~p~ 394 (574)
T COG3263 360 RLFFNVAFFVVLVSLLIQGSTLPWAAKKLKVIVPP 394 (574)
T ss_pred eEEeehhHHHHHHHHHHccCcchHHHHhcccccCC
Confidence 88999999999999999999999999998875543
No 9
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-31 Score=257.95 Aligned_cols=381 Identities=15% Similarity=0.142 Sum_probs=286.4
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHH
Q 009645 35 VIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFG 114 (530)
Q Consensus 35 ~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la 114 (530)
+.+.++|++..+.|+....+.|+++||......+......-+.-..-+.++.|....|.++.|++.+++.++++++..+-
T Consensus 27 l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vll 106 (467)
T KOG4505|consen 27 LASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLL 106 (467)
T ss_pred HHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 56788888888999999999999999977644322211101111223678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhccc----CCc-hhhhhhhhhhhhhhHHHH
Q 009645 115 VVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQE----DTP-LLYSLVFGEGVVNDATSI 189 (530)
Q Consensus 115 ~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~----~~~-~l~~ll~gEs~lND~~ai 189 (530)
.+.+.+-+++.+..+|.++| ++++..+++++++++||||+...++..+. ++| |+++++.+||..||++|+
T Consensus 107 lpVmi~gwlvs~~fvy~l~p-----~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMai 181 (467)
T KOG4505|consen 107 LPVMIIGWLVSFGFVYALIP-----NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAI 181 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcch
Confidence 99999999888888888876 89999999999999999999999999854 377 799999999999999999
Q ss_pred HHHHHHHHHhhc-cC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHH--HHHHHHHHHHHHHHH
Q 009645 190 VLFNAIQKFSVH-VT-PDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREV--ALMILMAYLSYVMAD 265 (530)
Q Consensus 190 vlf~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e~--~l~l~~~~l~~~lae 265 (530)
.++.....+..+ .. ...--......++....|+++|.++|++.+..+|+.+. ++-.+.|. .+-+.+++++..+.+
T Consensus 182 pflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aek-krlid~eSfl~~~vvl~lfc~gigt 260 (467)
T KOG4505|consen 182 PFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEK-KRLIDRESFLIFYVVLALFCMGIGT 260 (467)
T ss_pred hHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHhhhhh
Confidence 999888877652 11 11111246778999999999999999999999998864 34456664 455677888889999
Q ss_pred hhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhh-hhhhhcCCCchHHHHHHHH
Q 009645 266 LFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDME-KWKIVKGSPGTSVAVSSTL 344 (530)
Q Consensus 266 ~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~ 344 (530)
.+|.+.++..|++|.+.++..|-.. +++..+.-+.++.+++..+|+|.|..++..+ +|. ..+..++...++
T Consensus 261 iiGvddLl~sFfAGi~Fswd~wFsk----~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s----~~gl~vwrlvil 332 (467)
T KOG4505|consen 261 IIGVDDLLVSFFAGIVFSWDEWFSK----KTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLS----VEGLPVWRLVIL 332 (467)
T ss_pred eechhHHHHHHHhhhhcchhHHhhh----hhhhccHHHHHHHHHHHHHHHHhccccchhhcCCc----ccCchHHHHHHH
Confidence 9999999999999999998876422 1122345677888999999999999997654 221 122333433333
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCC----C-----C---cc
Q 009645 345 LGLVLVGR-AASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHT----Q-----R---PK 411 (530)
Q Consensus 345 ~~~~~v~R-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~----~-----~---~~ 411 (530)
-..+++.| ...++.+ |...++-.+|||++++||.| |.|..|+-.|+..-...... . . .-
T Consensus 333 si~iif~RRip~v~l~-------kp~iPdikswkEALFvGhFG-PIGVgAly~allar~~le~~ep~~~i~~~e~~~w~l 404 (467)
T KOG4505|consen 333 SITIIFIRRIPAVYLM-------KPLIPDIKSWKEALFVGHFG-PIGVGALYYALLARKELETLEPEKSIYESETVFWTL 404 (467)
T ss_pred HHHHHHhcccceEEEe-------ccCCcchhhHHHHHHhccCC-CccHHHHHHHHHHHhhhccCCcccccCCccccchhh
Confidence 33444444 4344432 22345677999999999999 99999988776531100000 0 0 12
Q ss_pred hhHHHHHHHhhhhHhhhhhhhhHHHH
Q 009645 412 NAIMITSTITIVLFSNVVFGLLTKPL 437 (530)
Q Consensus 412 ~~~i~~~t~~vVl~T~~v~g~~~~~l 437 (530)
.+.++..+..+|+.|+++||.+++.+
T Consensus 405 i~~iwpivsf~vlsSIiVHG~sv~~~ 430 (467)
T KOG4505|consen 405 IEIIWPIVSFTVLSSIIVHGSSVAMY 430 (467)
T ss_pred hhhhhhhhHHHHHHHHHhccchhhHH
Confidence 34588899999999999999988754
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.8e-35 Score=309.08 Aligned_cols=372 Identities=23% Similarity=0.318 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHHHH
Q 009645 32 ACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIIN 111 (530)
Q Consensus 32 ~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il 111 (530)
.+.+.+.+++| .++|+.++++++|+++|+......+.. ....+.+.++++++++|++|+|+|.+++||++++.+
T Consensus 7 ~~~~~~~l~~r-~~iP~~i~~i~~Gi~lg~~~~~~~~~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~ 80 (380)
T PF00999_consen 7 LAFVAGILFRR-LGIPSIIGYILVGIVLGPSGLGLLEPD-----NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRAL 80 (380)
T ss_dssp -----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----------
T ss_pred hHHHHHHHHHH-hCCCHHHHHHHheeehhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 34444555554 559999999999999998755421111 123356889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhccc-CCc-hhhhhhhhhhhhhhHHHH
Q 009645 112 LFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQE-DTP-LLYSLVFGEGVVNDATSI 189 (530)
Q Consensus 112 ~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~-~~~-~l~~ll~gEs~lND~~ai 189 (530)
..++.++++++.+++..+++.+ ...++++.+++++|+++++|||+.+.++++|. +.+ ++++++.+|+++||..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i 157 (380)
T PF00999_consen 81 ALGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAI 157 (380)
T ss_dssp ------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTT
T ss_pred ccccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchh
Confidence 9999999999887677766411 01189999999999999999999999999665 455 799999999999999999
Q ss_pred HHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhcc
Q 009645 190 VLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQL 269 (530)
Q Consensus 190 vlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~ 269 (530)
+++.++.+........+..+....++.....+.++|...+++..+..++. ++.++.+..+++++++..|+++|.+|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g~ 234 (380)
T PF00999_consen 158 ILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILGL 234 (380)
T ss_dssp TTT-----------------------------------------------------------------------------
T ss_pred hhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccccc
Confidence 99998887763122233444555555555555555655555555444432 245567788999999999999999999
Q ss_pred chhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCchHHHHHHHHHHHHH
Q 009645 270 SGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVL 349 (530)
Q Consensus 270 Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (530)
|+++++|++|+.+++...++ +-+++.+++++ .++++++|+++|+.++.....+ ....+....+....++
T Consensus 235 s~~l~af~~Gl~~~~~~~~~---~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~-----~~~~~~~~~~~~~~~~ 303 (380)
T PF00999_consen 235 SGILGAFIAGLILSNSPFAE---RLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFN-----SPSVIILVLLLLIAIL 303 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccceeeeeehccccccccc---hhhhcccchhh---HHHhhHHhhhhccccccccccc-----chhhhhhHHHHHHHHH
Confidence 99999999999999543321 12222333333 8999999999999996433110 0113344455556677
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcchhHHHHHHHhhhhHhhhh
Q 009645 350 VGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVV 429 (530)
Q Consensus 350 v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl~T~~v 429 (530)
++|.++++..++. .+.++|++..+++++.|||+++++++...... +. ..+.+.+.++.++++|+++
T Consensus 304 ~~k~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~----~~-~~~~~~~~~~~~vl~t~ii 369 (380)
T PF00999_consen 304 LGKFIGVYLASRL---------FGIPWKEALFIGLGMLPRGEVSLALALIALNL----GI-ISEQMFTIIIAAVLLTIII 369 (380)
T ss_dssp ----------------------------HHHHTTTTSS--HHHHHHHHHHHHH---------------------------
T ss_pred Hhhhceeehhhhh---------cccccchhHHHHHhhcCccHHHHHHHHHHHhc----CC-CCHHHHHHheeeeeeHHHH
Confidence 8999888766532 47899999999999988999999999775331 11 2233488888999999999
Q ss_pred hhhhHHHHHHH
Q 009645 430 FGLLTKPLVRL 440 (530)
Q Consensus 430 ~g~~~~~l~~~ 440 (530)
+|.+++|+++|
T Consensus 370 ~~~~~~~l~~~ 380 (380)
T PF00999_consen 370 AGIILSPLLRK 380 (380)
T ss_dssp -----------
T ss_pred HHHHHHHHhcC
Confidence 99999999876
No 11
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-26 Score=240.38 Aligned_cols=374 Identities=16% Similarity=0.191 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccCh--hHHHHHhhHHHhhhhhhcCC
Q 009645 22 SVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDE--DLFFICLLPPIIFNAGFQVK 99 (530)
Q Consensus 22 ~i~~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~--~~~~~i~L~~ilF~aG~~l~ 99 (530)
.+..+.+++..+.+.+++++|. ++|.++++++.|+++||...... .+-++ +.+.++++..++|.+|+|.|
T Consensus 7 ~l~~~~iiL~~a~i~~~l~~rl-~lp~vlg~llaGiilGp~~~~~~-------~~~~~~i~~laelGvi~LlF~~GLE~~ 78 (397)
T COG0475 7 ILLQLLILLLVAVILGPLFKRL-GLPPVLGYLLAGIILGPWGLLLI-------IESSEIIELLAELGVVFLLFLIGLEFD 78 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHhcCccccccc-------CCchHHHHHHHHHhHHHHHHHHHHCcC
Confidence 3445566777888888777774 49999999999999998211111 11111 34778999999999999999
Q ss_pred hHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccC-Cc-hhhhh
Q 009645 100 KKQFFQNFII-INLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQED-TP-LLYSL 176 (530)
Q Consensus 100 ~~~~~~~~~~-il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~-~~-~l~~l 176 (530)
.+++||+.++ ....+..+...++.......+..+ ++++..++++|++++.|+...+.++++|.| .+ +..++
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~ 152 (397)
T COG0475 79 LERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL------GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQL 152 (397)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 9999999999 666666666555333322222224 899999999999999999999999999987 33 79999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhccCchh--hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCchHHHHH
Q 009645 177 VFGEGVVNDATSIVLFNAIQKFSVHVTPDT--VMQFTGSFLYLFSLSTLLGIAVG-LMSAYIIRELYFGRHSTDREVALM 253 (530)
Q Consensus 177 l~gEs~lND~~aivlf~~~~~~~~~~~~~~--~~~~~~~~l~~~~~s~~~G~~~G-~~~~~~~~~~~~~~~~~~~e~~l~ 253 (530)
+.+..+++|..+++++.++..+..+.+... +...+......... -...| ++..++.|+... .+.++.....+
T Consensus 153 ~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~----~l~~g~~l~~~~~r~~~~-~~~~e~~~~~~ 227 (397)
T COG0475 153 ILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLAL----LLLLGRYLLPPLFRRVAK-TESSELFILFV 227 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh-ccchHHHHHHH
Confidence 999999999999999999888865211111 12222221111111 12223 555666666532 24556678889
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHH-hhhhhhhhhhcccchhhhhhhhhcC
Q 009645 254 ILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSF-ISETFIFLYVGMDALDMEKWKIVKG 332 (530)
Q Consensus 254 l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~Fv~~G~~~~~~~~~~~~~~ 332 (530)
+.+++...+++|.+|+|.++++|.+|+++++... .+++.++-.+.+.. ++.++||+.+|++++....++
T Consensus 228 l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~------~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~---- 297 (397)
T COG0475 228 LLLVLGAAYLAELLGLSMILGAFLAGLLLSESEY------RKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE---- 297 (397)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHhccccc------chHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc----
Confidence 9999999999999999999999999999995432 11345555566667 999999999999997654221
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcch
Q 009645 333 SPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKN 412 (530)
Q Consensus 333 ~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~ 412 (530)
..........+.++.|.+..+...+.. +.++|++...++..-+||+.+++++-... +....
T Consensus 298 ----~~~~~l~~~~~~i~~K~~~~~~~~~~~---------g~~~~~~~~~g~~~~~~ge~~~v~~~~~~------~~~i~ 358 (397)
T COG0475 298 ----NLLLILLLVALAILGKILGAYLAARLL---------GFSKRLALGIGLLLRQGGEFAFVLAGIAL------GSAIS 358 (397)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCcHHHHHHHHhhhhhhhHHHHHHHHhcc------cchhH
Confidence 222345556678899998888776554 46677777777766556666666655421 12344
Q ss_pred hHHHHHHHhhhhHhhhhhhhhHHHHHHHhCC
Q 009645 413 AIMITSTITIVLFSNVVFGLLTKPLVRLMLQ 443 (530)
Q Consensus 413 ~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~ 443 (530)
+...+.++.+.++++.+....++++.++...
T Consensus 359 ~~~~~~~v~~smi~t~i~~~~~~~~~~~~~~ 389 (397)
T COG0475 359 EALLTAVVILSMITTPILPLLTPILLKRLLK 389 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555555666666655556666665544
No 12
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.96 E-value=1.4e-26 Score=260.76 Aligned_cols=349 Identities=13% Similarity=0.101 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCccccccc----ChhHHHHHhhHHHhhhhhhcCChHH
Q 009645 27 VALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLF----DEDLFFICLLPPIIFNAGFQVKKKQ 102 (530)
Q Consensus 27 ~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~----~~~~~~~i~L~~ilF~aG~~l~~~~ 102 (530)
.++++++.+++.+++| .++|..++++++|+++||......+......+.. .-+.+..+++.+++|.+|+|+|.+.
T Consensus 49 ~lil~~a~l~~~ll~r-l~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~ 127 (832)
T PLN03159 49 TLVVVTTRLLVFILKP-FRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV 127 (832)
T ss_pred HHHHHHHHHHHHHHHh-cCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 4455666666777765 4599999999999999996654332111111111 1245778999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCC--chhhhhhhhh
Q 009645 103 FFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDT--PLLYSLVFGE 180 (530)
Q Consensus 103 ~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~--~~l~~ll~gE 180 (530)
+||+.++++..++.++++++.+.....++ +............++++|.++|.|+..++.++++|.+. .+++++..+.
T Consensus 128 lr~~~k~a~~ia~~~~ilpf~lg~~~~~~-l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsa 206 (832)
T PLN03159 128 IRRTGKKALAIAIAGMALPFCIGLAFSFI-FHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSA 206 (832)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHH
Confidence 99999999999999999886554433333 32211101123456889999999999999999999984 3799999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHH
Q 009645 181 GVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLS 260 (530)
Q Consensus 181 s~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~ 260 (530)
+++||.++++++.++..+..... .....+..++..++..++..+++..+..|+.++....++..+....+++++++++
T Consensus 207 avv~Dl~~~ilLav~~~l~~~~~--~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~ 284 (832)
T PLN03159 207 ALVNDMCAWILLALAIALAENDS--TSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMIS 284 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHH
Confidence 99999999999988866644111 1111111111111111222233344455555554211122334466777778889
Q ss_pred HHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCchHHHH
Q 009645 261 YVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAV 340 (530)
Q Consensus 261 ~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
.+++|.+|++.++|+|++|+++.+. +..+...+.+-.....++.++||+++|+.++....+ ....+..
T Consensus 285 a~lae~~Gl~~ilGAFlaGl~lp~~------~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~------~~~~~~~ 352 (832)
T PLN03159 285 GFITDAIGTHSVFGAFVFGLVIPNG------PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ------GPATWGL 352 (832)
T ss_pred HHHHHHhCccHHHHHHHHhhccCCc------chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc------CchHHHH
Confidence 9999999999999999999999841 112222333434446689999999999998653311 1123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccc
Q 009645 341 SSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNK 400 (530)
Q Consensus 341 ~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~ 400 (530)
..+++++.+++|+++.+..+++ .++++++++.+|....+||.++++++...
T Consensus 353 ~~~liv~a~~gK~~g~~l~a~~---------~g~~~~eal~lG~lm~~kG~~~Lii~~ig 403 (832)
T PLN03159 353 LVLVIIMASAGKIMGTIIIAFF---------YTMPFREGITLGFLMNTKGLVEMIVLNVG 403 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4455566778888887766543 37899999999999989999999877653
No 13
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.96 E-value=3.7e-26 Score=250.96 Aligned_cols=366 Identities=14% Similarity=0.044 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChH
Q 009645 22 SVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKK 101 (530)
Q Consensus 22 ~i~~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~ 101 (530)
.+...++++..+.+.+.+++| .++|.+++++++|+++||......+ .. . +-+.+.++++.+++|..|+|+|++
T Consensus 6 ~l~~~~~~l~~a~i~~~l~~r-l~lp~vlgyilaGillGP~~lg~i~--~~--~--~i~~laelGvv~LlF~iGLEl~~~ 78 (621)
T PRK03562 6 TLIQALIYLGAAVLIVPIAVR-LGLGSVLGYLIAGCIIGPWGLRLVT--DV--E--SILHFAEFGVVLMLFVIGLELDPQ 78 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHhCcccccCCC--CH--H--HHHHHHHHHHHHHHHHHHhCcCHH
Confidence 344455566666677777766 5599999999999999985432211 00 0 113577899999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCC-c-hhhhhhhh
Q 009645 102 QFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDT-P-LLYSLVFG 179 (530)
Q Consensus 102 ~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~-~-~l~~ll~g 179 (530)
++|+.++.++.++...+++++.+++...+ ++ +++|..++++|++++.|+++.++++++|.+. . +.++...+
T Consensus 79 ~l~~~~~~~~~~g~~qv~~~~~~~~~~~~-~~------g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~ 151 (621)
T PRK03562 79 RLWKLRRSIFGGGALQMVACGGLLGLFCM-LL------GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFA 151 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHH
Confidence 99999999999999998888766654443 44 8899999999999999999999999999873 3 68999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCchHHHHHHHHHH
Q 009645 180 EGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVG-LMSAYIIRELYFGRHSTDREVALMILMAY 258 (530)
Q Consensus 180 Es~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G-~~~~~~~~~~~~~~~~~~~e~~l~l~~~~ 258 (530)
-.++||..+++++.++..+................+ ..++.+++.++.| ++...++++... ++.++.....++.+++
T Consensus 152 ~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~e~~~~~~l~lv~ 229 (621)
T PRK03562 152 ILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSAL-KVAGALALVVLGGRYVTRPALRFVAR-SGLREVFTAVALFLVF 229 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHH
Confidence 999999999999887765533101111111111111 1222222223333 344555555532 2344455666778888
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCchHH
Q 009645 259 LSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSV 338 (530)
Q Consensus 259 l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~~~~ 338 (530)
++.+++|.+|+|..+|+|++|+++++. +.+++.++-.+.+..++.++||+.+|+.++....++ .+
T Consensus 230 ~~a~la~~~Gls~~lGAFlAGl~l~~~-------~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~--------~~ 294 (621)
T PRK03562 230 GFGLLMEEVGLSMALGAFLAGVLLASS-------EYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLE--------NP 294 (621)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH--------HH
Confidence 999999999999999999999999953 223444555555566788999999999986533211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcchhHHHHH
Q 009645 339 AVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITS 418 (530)
Q Consensus 339 ~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~~~i~~~ 418 (530)
.....++++.+++|+++++..++.. +++++++..+++..-+||..++.++..... .+ -..+.....
T Consensus 295 ~~il~~~~~~~~~K~~~~~~~~~~~---------g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~-~~----~i~~~~~~~ 360 (621)
T PRK03562 295 LRILILLLGFLAIKIAMLWLLARPL---------GVPRKQRRWFAVLLGQGGEFAFVVFGAAQM-AN----VLEPEWAKL 360 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHhHHHHHHHHHhccccHHHHHHHHHHH-CC----CCCHHHHHH
Confidence 2223334457788988888766543 778899999998776799999887754321 12 123334444
Q ss_pred HHhhhhHhhhhhhh
Q 009645 419 TITIVLFSNVVFGL 432 (530)
Q Consensus 419 t~~vVl~T~~v~g~ 432 (530)
.+.++++|.++.+.
T Consensus 361 lv~~v~lS~~~tP~ 374 (621)
T PRK03562 361 LTLAVALSMAATPL 374 (621)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566667666443
No 14
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.95 E-value=6.2e-26 Score=226.29 Aligned_cols=268 Identities=17% Similarity=0.172 Sum_probs=207.9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHHHH
Q 009645 32 ACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIIN 111 (530)
Q Consensus 32 ~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il 111 (530)
.+.+.+.+.+| .++|+++++++.|+++||......+ +. ..-+.+.++++.+++|.+|+|+|.+++||+.+.+.
T Consensus 3 ~a~~~~~l~~~-l~lP~~v~~il~GillGp~~lg~i~--~~----~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~ 75 (273)
T TIGR00932 3 AAVLAVPLSRR-LGIPSVLGYLLAGVLIGPSGLGLIS--NV----EGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAF 75 (273)
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHhCcccccCCC--Ch----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34456677666 5699999999999999975332111 10 01235678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCC-c-hhhhhhhhhhhhhhHHHH
Q 009645 112 LFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDT-P-LLYSLVFGEGVVNDATSI 189 (530)
Q Consensus 112 ~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~-~-~l~~ll~gEs~lND~~ai 189 (530)
..+..++++++++++..+++++ ++++.+++++|+++++||+.++.++++|.+. . +..+++.+++++||.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i 149 (273)
T TIGR00932 76 GVGVLQVLVPGVLLGLLLGHLL------GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVV 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHH
Confidence 9999999998777777666666 8999999999999999999999999999984 4 799999999999999999
Q ss_pred HHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhcc
Q 009645 190 VLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQL 269 (530)
Q Consensus 190 vlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~ 269 (530)
+++.+........+ .+.......+...+...++.+++.++...++.|+... ++..+.+...++.+++..+.++|.+|.
T Consensus 150 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~la~~~g~ 227 (273)
T TIGR00932 150 PLLALLPLLATSAS-TEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE-LRPSELFTAGSLLLMFGSAYFADLLGL 227 (273)
T ss_pred HHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHhCC
Confidence 99998877654111 1222223334444555556677777777777777643 234456678888889999999999999
Q ss_pred chhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccc
Q 009645 270 SGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDA 321 (530)
Q Consensus 270 Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~ 321 (530)
|+++|+|++|++++|... +++..+..+.+..++.+++|+++|+++
T Consensus 228 s~~lgaf~aGl~~~~~~~-------~~~l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 228 SMALGAFLAGVVLSESEY-------RHKLESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred cHHHHHHHHHHHHcCCch-------HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence 999999999999996432 223445556666899999999999876
No 15
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.95 E-value=9.5e-25 Score=239.39 Aligned_cols=353 Identities=13% Similarity=0.058 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhh
Q 009645 28 ALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNF 107 (530)
Q Consensus 28 ~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~ 107 (530)
+++..+.+.+.+++| .++|.+++++++|+++||......+ +. . .-+.+.++++.+++|..|+|+|.+++|+..
T Consensus 12 ~~l~~a~~~~~l~~r-l~~p~ilg~ilaGillGP~~lg~i~--~~--~--~i~~laelGvv~LLF~iGLel~~~~l~~~~ 84 (601)
T PRK03659 12 LFLFAAVVAVPLAQR-LGIGAVLGYLLAGIAIGPWGLGFIS--DV--D--EILHFSELGVVFLMFIIGLELNPSKLWQLR 84 (601)
T ss_pred HHHHHHHHHHHHHHH-hCCChHHHHHHHHHHhccccccCCC--cH--H--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344455555666665 5699999999999999985432211 00 0 113577899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCCc--hhhhhhhhhhhhhh
Q 009645 108 IIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTP--LLYSLVFGEGVVND 185 (530)
Q Consensus 108 ~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~~--~l~~ll~gEs~lND 185 (530)
+.++.++..++++++.+++...+ ++ +++|..++++|..++.|+++.+.++++|.+.. +.+++..+..++||
T Consensus 85 ~~~~~~g~~~v~~t~~~~~~~~~-~~------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~D 157 (601)
T PRK03659 85 RSIFGVGAAQVLLSAAVLAGLLM-LT------DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQD 157 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHH
Confidence 99999999999998877665544 34 88999999999999999999999999999843 58899999999999
Q ss_pred HHHHHHHHHHHHHhhccCch-hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHH
Q 009645 186 ATSIVLFNAIQKFSVHVTPD-TVMQFTGSFLYLFSLSTLLGIAVG-LMSAYIIRELYFGRHSTDREVALMILMAYLSYVM 263 (530)
Q Consensus 186 ~~aivlf~~~~~~~~~~~~~-~~~~~~~~~l~~~~~s~~~G~~~G-~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~l 263 (530)
..+++++.++..+....+.. .+... +..+ ..+++.++.| ++...++++... .+.++.....++.+++++.++
T Consensus 158 i~~i~ll~l~~~l~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~~a~l 231 (601)
T PRK03659 158 LAVIPALALVPLLAGSADEHFDWMKI----GMKV-LAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLGSALF 231 (601)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHH
Confidence 99988888765554311111 11111 1111 1111112222 334445554421 233444556667777888889
Q ss_pred HHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCchHHHHHHH
Q 009645 264 ADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSST 343 (530)
Q Consensus 264 ae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (530)
+|.+|+|.++++|++|+++++. +.+++.++-.+.+..++.++||+.+|+.++....++ .+.....
T Consensus 232 ~~~~Gls~~LGAFlaGl~l~~s-------~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~--------~~~~il~ 296 (601)
T PRK03659 232 MDALGLSMALGTFIAGVLLAES-------EYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYT--------HLLWVLI 296 (601)
T ss_pred HHHhCccHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH--------hHHHHHH
Confidence 9999999999999999999953 223333334444556788999999999986543222 1223334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcchhHHHHHHHhhh
Q 009645 344 LLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIV 423 (530)
Q Consensus 344 ~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~~~i~~~t~~vV 423 (530)
+.++.+++|++.++..+.. .+++++++..++...-+||..++.++..... .+. ..+...+..+.++
T Consensus 297 ~~~~~l~~K~~~~~~~~~~---------~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~-~g~----i~~~~~~~lv~~v 362 (601)
T PRK03659 297 SVVVLVAVKGLVLYLLARL---------YGLRSSERMQFAGVLSQGGEFAFVLFSAASS-QRL----LQGDQMALLLVVV 362 (601)
T ss_pred HHHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhccccHHHHHHHHHHh-CCC----CCHHHHHHHHHHH
Confidence 4556788999988876644 3778888887776655899999888765322 222 2223333334555
Q ss_pred hHhhhh
Q 009645 424 LFSNVV 429 (530)
Q Consensus 424 l~T~~v 429 (530)
++|+++
T Consensus 363 ~ls~~~ 368 (601)
T PRK03659 363 TLSMMT 368 (601)
T ss_pred HHHHHH
Confidence 555554
No 16
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.95 E-value=1.3e-24 Score=237.55 Aligned_cols=368 Identities=14% Similarity=0.074 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHH
Q 009645 25 LFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFF 104 (530)
Q Consensus 25 ~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~ 104 (530)
.+.+++..+.+.+++++| .++|..++++++|+++||....... . ....+.+.++++.+++|.+|+|+|.++++
T Consensus 10 ~~~~~l~~a~~~~~l~~r-l~~P~ivg~IlaGillGp~~lg~~~--~----~~~~~~la~lGli~llF~~Gle~d~~~l~ 82 (558)
T PRK10669 10 TIVGGLVLAFILGMLANR-LRISPLVGYLLAGVLAGPFTPGFVA--D----TKLAPELAELGVILLMFGVGLHFSLKDLM 82 (558)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhCcccccccc--c----hHHHHHHHHHHHHHHHHHhHhcCCHHHHH
Confidence 334455666667777766 5699999999999999985432211 0 11134688899999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCC-c-hhhhhhhhhhh
Q 009645 105 QNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDT-P-LLYSLVFGEGV 182 (530)
Q Consensus 105 ~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~-~-~l~~ll~gEs~ 182 (530)
++++.....+..+++++++ ++....+.+ ++++..++++|+++|.|+++.+.++++|.+. . +..+++.+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~ 155 (558)
T PRK10669 83 AVKSIAIPGAIAQIAVATL-LGMALSAVL------GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLI 155 (558)
T ss_pred HHhhHHHHHHHHHHHHHHH-HHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHH
Confidence 9977666666666666544 444445555 8999999999999999999999999999883 3 69999999999
Q ss_pred hhhHHHHHHHHHHHHHhh-c-cCchhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHH
Q 009645 183 VNDATSIVLFNAIQKFSV-H-VTPDTVMQFTGSFLYLFSLS----TLLGIAVGLMSAYIIRELYFGRHSTDREVALMILM 256 (530)
Q Consensus 183 lND~~aivlf~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~s----~~~G~~~G~~~~~~~~~~~~~~~~~~~e~~l~l~~ 256 (530)
+||..+++++.++..+.. . .+..+.........+.++.. ++..++..++..++.++... .+.++......+.+
T Consensus 156 ~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~e~~~l~~l~~ 234 (558)
T PRK10669 156 VEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA-TGSRELFTLSVLAL 234 (558)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHH
Confidence 999999988887665432 1 11111111111122222222 22233344455555555432 12222233334444
Q ss_pred HHHHH-HHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCc
Q 009645 257 AYLSY-VMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPG 335 (530)
Q Consensus 257 ~~l~~-~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~ 335 (530)
+++.. ..+|.+|+|.++|+|++|+++++.. .+++..+-...+..++.++||+.+|++++....++
T Consensus 235 ~l~~a~~~~~~lGls~~lGAflaGl~l~~~~-------~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~------- 300 (558)
T PRK10669 235 ALGIAFGAVELFDVSFALGAFFAGMVLNESE-------LSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQ------- 300 (558)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHhCCh-------hHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHH-------
Confidence 55443 4579999999999999999998521 11112211222445689999999999987654432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcchhHH
Q 009645 336 TSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIM 415 (530)
Q Consensus 336 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~~~i 415 (530)
.......++++.+++|+++++..+.. .+.++|++..++...-+||..++.++..... . ....+..
T Consensus 301 -~~~~~~~~~~~~~v~K~~~~~~~~~~---------~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~-~----gii~~~~ 365 (558)
T PRK10669 301 -QPLAVLATLAIIVFGKSLAAFFLVRL---------FGHSRRTALTIAASLAQIGEFAFILAGLGMA-L----NLLPQAG 365 (558)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCChhhHHHHHHHHhcccchHHHHHHHHHh-C----CCCCHHH
Confidence 11122334455778898888766544 3678999999998887899999988765322 2 2234455
Q ss_pred HHHHHhhhhHhhhhhhhhHHH
Q 009645 416 ITSTITIVLFSNVVFGLLTKP 436 (530)
Q Consensus 416 ~~~t~~vVl~T~~v~g~~~~~ 436 (530)
....+.++++|+++.+...+.
T Consensus 366 ~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 366 QNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566667777888775554443
No 17
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.4e-14 Score=138.68 Aligned_cols=364 Identities=19% Similarity=0.231 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHH
Q 009645 23 VTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQ 102 (530)
Q Consensus 23 i~~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~ 102 (530)
+...++.++++.++|.+..|.| +|.-+++++.|++.||... +...+ ..+.+ .+.++++..++|-.|++.+.|+
T Consensus 8 i~tiv~gl~lAFl~G~lA~rlr-lsPLVGyL~AGv~~gpftp----GFvad-~~La~-~LAelGViLLmFgvGLhfslkd 80 (408)
T COG4651 8 ITTIVGGLVLAFLLGALANRLR-LSPLVGYLLAGVLAGPFTP----GFVAD-QTLAP-ELAELGVILLMFGVGLHFSLKD 80 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHhcCCCCC----Ccccc-hhHHH-HHHHhhHHHHHHhcchheeHHH
Confidence 3445567788888998888755 9999999999999997533 22211 12222 4778999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCC-c-hhhhhh
Q 009645 103 FFQNFIIINLFGVVGTLISFGI---ISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDT-P-LLYSLV 177 (530)
Q Consensus 103 ~~~~~~~il~la~~g~~i~~~~---~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~-~-~l~~ll 177 (530)
+.....- |++|.+..... .+.+.-.++ ||++...+.+|-.+|-.+.|+.+.-++|.+. . +-+++-
T Consensus 81 LLavk~i----AipgAl~qia~at~lg~gL~~~l------gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iA 150 (408)
T COG4651 81 LLAVKAI----AIPGALAQIALATLLGMGLSSLL------GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIA 150 (408)
T ss_pred HhhHHHH----hcchHHHHHHHHHHHHhHHHHHc------CCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEE
Confidence 8866543 34444333222 233333334 8999999999999999999999999998862 2 567777
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhh--c---cCchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCchH--
Q 009645 178 FGEGVVNDATSIVLFNAIQKFSV--H---VTPDTVMQFTGSFLYLFSLSTLLGIAVGL-MSAYIIRELYFGRHSTDRE-- 249 (530)
Q Consensus 178 ~gEs~lND~~aivlf~~~~~~~~--~---~~~~~~~~~~~~~l~~~~~s~~~G~~~G~-~~~~~~~~~~~~~~~~~~e-- 249 (530)
.|--++.|...++.....-++.. + .+..+....++..+.....-+.++.++|. +..|+..+.. +...+|
T Consensus 151 iGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a---~tGsrElf 227 (408)
T COG4651 151 IGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVA---ATGSRELF 227 (408)
T ss_pred EeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCcHHHH
Confidence 88889999777665555444443 1 11112222222223233333445555554 4556666664 233333
Q ss_pred HHHHHHHHH-HHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhh
Q 009645 250 VALMILMAY-LSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWK 328 (530)
Q Consensus 250 ~~l~l~~~~-l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~ 328 (530)
...++.+++ .+|..+|.+|.|--+++|++|++++... .+++..++. -.+-..+...||+-+|+..++...-+
T Consensus 228 ~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~ese------lshraa~~s-lpLrdaFaVlFFvsVGmlf~P~~l~~ 300 (408)
T COG4651 228 TLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESE------LSHRAAEDS-LPLRDAFAVLFFVSVGMLFDPMILIQ 300 (408)
T ss_pred HHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchh------hhHHHHHhc-cCHHHHHHHHHHHHhhhhcCcHHhhc
Confidence 333344433 4566778999999999999999998432 121111111 12333567889999999986543211
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCC
Q 009645 329 IVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQ 408 (530)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~ 408 (530)
.-......+.+++.+|-+..|..... .+.+.+.+..++.+---.|+-++.++-.... .+..+
T Consensus 301 --------~pl~vlatllii~~gKs~aaf~ivr~---------Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~-l~llp 362 (408)
T COG4651 301 --------QPLAVLATLLIILFGKSVAAFFIVRA---------FGHPVRTALTISASLAQIGEFSFILAGLGIK-LNLLP 362 (408)
T ss_pred --------chHHHHHHHHHHHhhhHHHHHHHHHH---------hCCcchHHHHHHHHHHhhhhHHHHHHHHhhh-hccCc
Confidence 11223344556777887766544322 2445555555554432356666666543221 12223
Q ss_pred CcchhHHHHHHHhhhhHhhhhhhhhHH
Q 009645 409 RPKNAIMITSTITIVLFSNVVFGLLTK 435 (530)
Q Consensus 409 ~~~~~~i~~~t~~vVl~T~~v~g~~~~ 435 (530)
...++.+.+.. +.|++.++....
T Consensus 363 ~~gr~Lvlaga----ilsIl~nPllf~ 385 (408)
T COG4651 363 EAGRDLVLAGA----ILSILLNPLLFA 385 (408)
T ss_pred HHHHHHHHHHH----HHHHHHhHHHHH
Confidence 44566665544 455555555443
No 18
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.55 E-value=9.8e-14 Score=154.91 Aligned_cols=374 Identities=14% Similarity=0.164 Sum_probs=237.8
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccCh----hHHHHHhhHHHhhhhhhcCChHHHHHhhHHHH
Q 009645 36 IGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDE----DLFFICLLPPIIFNAGFQVKKKQFFQNFIIIN 111 (530)
Q Consensus 36 ~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~----~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il 111 (530)
+.+++-|..++|..+..++.|+++||..+...+.........+. +.+..++.-..+|..|+++|.+.++|+.++..
T Consensus 37 ~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~ 116 (769)
T KOG1650|consen 37 LLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAI 116 (769)
T ss_pred HHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeE
Confidence 34444455669999999999999998776544322222222111 35667778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhCCC----CCCHHHHHHHhcccccccHHHHHHHhcccC--Cchhhhhhhhhhhhh
Q 009645 112 LFGVVGTLISFGIISIGSAKLFM-KFGLT----FWDQGDFLALGAILSATDTVCTLQVLNQED--TPLLYSLVFGEGVVN 184 (530)
Q Consensus 112 ~la~~g~~i~~~~~~~~~~~l~~-~~~~~----~l~~~~alllGailsaTdpv~v~~il~~~~--~~~l~~ll~gEs~lN 184 (530)
.+++.++++++.. +.+....+. ..... ......-...+...|.|+-..+..++.|.+ .++++.+...++++|
T Consensus 117 ~I~~~~~~~p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~ 195 (769)
T KOG1650|consen 117 VIAIASVVLPFGL-GFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVN 195 (769)
T ss_pred EEEEEEeehhhHh-hhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhh
Confidence 8998888887544 223322221 11110 111224567778889999999999999988 347999999999999
Q ss_pred hHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHH
Q 009645 185 DATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMA 264 (530)
Q Consensus 185 D~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~la 264 (530)
|..++.++.....+...... ........+...++..+..=.++-.+..|+.|+....+...+......+...+.+....
T Consensus 196 dv~~~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~ 274 (769)
T KOG1650|consen 196 DVAGWILLALALAFSSELKL-SPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLT 274 (769)
T ss_pred hHHHHHHHHHHHHHhccCCC-cchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHH
Confidence 99999988877777552211 11111222222222222222233344555555532122233445677788888888888
Q ss_pred Hhhc-cchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCchHHHHHHH
Q 009645 265 DLFQ-LSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSST 343 (530)
Q Consensus 265 e~lg-~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (530)
+.++ .++++++|+.|++.-|..+ -.....+.+-.....++.++.|...|...+..... .+.....
T Consensus 275 ~~~~~i~~~~Gaf~~Gl~iP~~~p-----~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~---------~~~~~~~ 340 (769)
T KOG1650|consen 275 DLIGGIHSIFGAFILGLAIPHGPP-----LGSALIEKLEDLVSGLLLPLYFAISGLKTDISRIN---------KWGALIR 340 (769)
T ss_pred HHhccccccchhheEEEecCCCCc-----hhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHH---------HHHHHHH
Confidence 8777 7889999999999985432 23333333444455688999999999988653211 1233344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcchhHHHHHHHhhh
Q 009645 344 LLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIV 423 (530)
Q Consensus 344 ~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~~~i~~~t~~vV 423 (530)
.+....+++++++...+.. .|++++|.+.++....-||-+.+..-..... . ...++..++..+...
T Consensus 341 ~i~~~~~~K~l~t~~~sl~---------~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~-~----~~~~~~~f~~~vl~a 406 (769)
T KOG1650|consen 341 TILIFGAVKLLSTLGTSLY---------CKLPLRDSLALGLLMSTKGLVELIVLNTGLD-R----KILSDEGFTVMVLMA 406 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH---------hcCchhHHHHHHHHHHhhhHHHHHHHHHHhh-c----CCcccchHHHHHHHH
Confidence 5556778888888776653 3889999999888877788777665443211 1 112223333333333
Q ss_pred hHhhhhhhhhHHHHHHHhCC
Q 009645 424 LFSNVVFGLLTKPLVRLMLQ 443 (530)
Q Consensus 424 l~T~~v~g~~~~~l~~~l~~ 443 (530)
++++ ..++|++..+.+
T Consensus 407 lv~t----~I~~~~l~~~y~ 422 (769)
T KOG1650|consen 407 LVST----FITPPLLMFLYD 422 (769)
T ss_pred HHHH----hhHHHHHHHhcc
Confidence 3443 447777777654
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.08 E-value=8.6e-08 Score=99.20 Aligned_cols=261 Identities=13% Similarity=0.128 Sum_probs=159.1
Q ss_pred HHHHHhhHHHhhhhhhcCChH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhccc
Q 009645 81 LFFICLLPPIIFNAGFQVKKK-------QFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAIL 153 (530)
Q Consensus 81 ~~~~i~L~~ilF~aG~~l~~~-------~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGail 153 (530)
..-+.++.+--|..|+|++.+ ..||...+ ..-|+.|++++.+ .|+.+. ..-..+.-=-++-
T Consensus 65 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPal-----iy~~~n------~~~~~~~~GW~Ip 132 (423)
T PRK14853 65 WAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPAL-----IYVAVN------LAGGGALRGWAIP 132 (423)
T ss_pred HHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHH-----HHHHHh------CCchhhhhhhhhh
Confidence 455677778889999999653 33433333 3556677777643 344442 2112222223567
Q ss_pred ccccHHHHHHHhcccC--Cc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 154 SATDTVCTLQVLNQED--TP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGL 230 (530)
Q Consensus 154 saTdpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~ 230 (530)
+|||.+.++.++...| .| +++..+.+-+++||..++++..++-+ +..++..... .. ...
T Consensus 133 ~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt-----~~i~~~~L~~-------a~------~~~ 194 (423)
T PRK14853 133 TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT-----SELNLEALLL-------AL------VPL 194 (423)
T ss_pred hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC-----CCCCHHHHHH-------HH------HHH
Confidence 8999999999999875 46 79999999999999999998776441 1222211111 10 011
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccc-c----ccchhHHHHHHH-H
Q 009645 231 MSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNI-T----ESSRVTTKHTFA-T 304 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~-~----~~~~~~~~~~~~-~ 304 (530)
...+++++. +... ....+.+.....+..+..|.++.+|.++.|+++-.....+. . ++-.++.+|..+ .
T Consensus 195 ~~l~~l~~~----~V~~--~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~ 268 (423)
T PRK14853 195 ALFWLLVQK----RVRK--WWLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPL 268 (423)
T ss_pred HHHHHHHHc----CCch--hhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHH
Confidence 112223322 2222 22333335577788889999999999999999964222110 0 011233444444 4
Q ss_pred HHHhhhhhh-hhhhcccchhhhhh-hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCCccceee
Q 009645 305 LSFISETFI-FLYVGMDALDMEKW-KIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLAND-SPIDKIGFKQQVT 381 (530)
Q Consensus 305 l~~l~~~~~-Fv~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~ 381 (530)
.+++.-++| |...|+.+.....+ +.. .-.....+.+..+++|.++++..+++.-+.+. +.+.+.+|++..-
T Consensus 269 V~~~ILPLFAFANaGV~l~~~~~~~~~~------~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~g 342 (423)
T PRK14853 269 SAGVAVPVFAFFSAGVAIGGLSGLGAAL------TDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFG 342 (423)
T ss_pred HHHHHHHHHHHHHhhheecCchhHHHHh------hchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH
Confidence 457888999 99999998542211 100 00133345567889999999999998765543 3567788888755
Q ss_pred eE
Q 009645 382 IW 383 (530)
Q Consensus 382 i~ 383 (530)
.+
T Consensus 343 v~ 344 (423)
T PRK14853 343 VA 344 (423)
T ss_pred HH
Confidence 44
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.40 E-value=1.5e-05 Score=81.29 Aligned_cols=256 Identities=16% Similarity=0.172 Sum_probs=153.5
Q ss_pred HHHHHhhHHHhhhhhhcCChHHHH---HhhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhC---CCCCCHHHHHHHhc
Q 009645 81 LFFICLLPPIIFNAGFQVKKKQFF---QNFII---INLFGVVGTLISFGIISIGSAKLFMKFG---LTFWDQGDFLALGA 151 (530)
Q Consensus 81 ~~~~i~L~~ilF~aG~~l~~~~~~---~~~~~---il~la~~g~~i~~~~~~~~~~~l~~~~~---~~~l~~~~alllGa 151 (530)
..-+.++.+--|..|+|++.+-.. ++.++ -..-|+.|++.+.. .|..+..-+ ..|| +
T Consensus 55 wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~-----iy~~~n~~~~~~~~GW---------~ 120 (373)
T TIGR00773 55 WINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPAL-----IYLAFNANDPITREGW---------A 120 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCCcccCcc---------c
Confidence 455667777788999999866442 12222 23345566666643 344443200 1122 4
Q ss_pred ccccccHHHHHHHhccc--CCc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009645 152 ILSATDTVCTLQVLNQE--DTP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAV 228 (530)
Q Consensus 152 ilsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~ 228 (530)
+=.|||.+-++.++.=. +.| .++..+..=+++||..+++.-.++-+ +.-++... . ..+.
T Consensus 121 IP~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt-----~~i~~~~L-------~------~a~~ 182 (373)
T TIGR00773 121 IPAATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT-----NDLSMAAL-------L------VAAV 182 (373)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC-----CCCCHHHH-------H------HHHH
Confidence 55789999999998754 467 69999999999999999987654321 11121111 1 1111
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHH-H
Q 009645 229 GLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLS-F 307 (530)
Q Consensus 229 G~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 307 (530)
+...-+.++|.+ .... ....+....+.+.. ...|.+..+|.+..|+++.++.+.+ ++-.++.+|..+... +
T Consensus 183 ~~~~l~~~~~~~----v~~~-~~y~~lgvllW~~~-~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~~ 254 (373)
T TIGR00773 183 AIAVLAVLNRCG----VRRL-GPYMLVGVILWFAV-LKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVAY 254 (373)
T ss_pred HHHHHHHHHHcC----Cchh-hHHHHHHHHHHHHH-HHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHHH
Confidence 222233445442 1111 22222223333333 7899999999999999998753322 222344566655444 6
Q ss_pred hhhhhh-hhhhcccchhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCCccceeeeE
Q 009645 308 ISETFI-FLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLAND-SPIDKIGFKQQVTIW 383 (530)
Q Consensus 308 l~~~~~-Fv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~ 383 (530)
+.-++| |...|+.+.... .+.. ... ....+.+..+++|.++++..+++.-+.+. +.+++.+|++..-++
T Consensus 255 lilPlFAFanAGv~l~~~~-~~~~-----~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~ 325 (373)
T TIGR00773 255 LILPLFAFANAGVSLQGVS-LNGL-----TSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVG 325 (373)
T ss_pred HHHHHHHHHhcCeeeecCc-chhh-----cCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 788999 999999985432 1100 011 13445567889999999999998877664 456788888875544
No 21
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.42 E-value=0.014 Score=59.94 Aligned_cols=270 Identities=14% Similarity=0.164 Sum_probs=150.3
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHHH---hhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhC---CCCCCHHHHHHHh
Q 009645 80 DLFFICLLPPIIFNAGFQVKKKQFFQ---NFII---INLFGVVGTLISFGIISIGSAKLFMKFG---LTFWDQGDFLALG 150 (530)
Q Consensus 80 ~~~~~i~L~~ilF~aG~~l~~~~~~~---~~~~---il~la~~g~~i~~~~~~~~~~~l~~~~~---~~~l~~~~alllG 150 (530)
+..-+.++.+--|..|+|++.+-..- +.++ -..-|+.|++.++. .|+.+..-+ ..||
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAl-----Iy~~~n~g~~~~~~GW--------- 126 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPAL-----IYAAFNYNNPETLRGW--------- 126 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHheeecCCCcccCcc---------
Confidence 34556777888899999998664421 1222 23345566666643 344443210 0123
Q ss_pred cccccccHHHHHHHhccc--CCc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHH
Q 009645 151 AILSATDTVCTLQVLNQE--DTP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIA 227 (530)
Q Consensus 151 ailsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~ 227 (530)
++=.|||.+-++.++.=. +.| .++..+..=++.||..++++-.++-+ +..++.. .... +
T Consensus 127 gIPmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt-----~~i~~~~-------L~~a------~ 188 (389)
T PRK09560 127 AIPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT-----SDLSLPA-------LALA------A 188 (389)
T ss_pred ccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC-----CCCCHHH-------HHHH------H
Confidence 355789999999998754 467 59999999999999999987654321 1112111 1111 1
Q ss_pred HHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHH
Q 009645 228 VGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSF 307 (530)
Q Consensus 228 ~G~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (530)
.+...-++++|.. .. .....+......++.--.-|.++-+|-+..|+++-.+.+....++--++.+|..+....
T Consensus 189 ~~~~~l~~ln~~~----v~--~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~ 262 (389)
T PRK09560 189 IAIAVLFLLNRLG----VT--KLTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVA 262 (389)
T ss_pred HHHHHHHHHHHcC----Cc--cchHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhh
Confidence 1122223445442 11 12222334444455555668889999999999998743322111112345555554444
Q ss_pred hhhhhhhhh--hcccchhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCCccceeeeEe
Q 009645 308 ISETFIFLY--VGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLAND-SPIDKIGFKQQVTIWW 384 (530)
Q Consensus 308 l~~~~~Fv~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 384 (530)
....-+|.+ .|..+.....-+.. . . ....+.+..+++|.++++..+++.-+++. +.+.+.+|++..-.+
T Consensus 263 ~~IlPlFAlaNAGV~l~~~~~~~~~---~--p--v~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~- 334 (389)
T PRK09560 263 FAILPLFAFANAGVSLAGISLSSLT---S--P--VPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVS- 334 (389)
T ss_pred hhhHHHHHhhcCCeeecCCcHHhcc---C--c--HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH-
Confidence 443344444 56665322110100 1 1 22334556789999999999998876654 456788888865444
Q ss_pred cCCchhhHHHHhhc
Q 009645 385 AGLMRGAVSVALAY 398 (530)
Q Consensus 385 ~Gl~RGava~aLa~ 398 (530)
. -+.+.+-+++
T Consensus 335 -~--L~GIGFTmSL 345 (389)
T PRK09560 335 -V--LCGIGFTMSL 345 (389)
T ss_pred -H--HHHHHHHHHH
Confidence 2 3455444443
No 22
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.23 E-value=0.031 Score=57.37 Aligned_cols=266 Identities=15% Similarity=0.147 Sum_probs=148.3
Q ss_pred HHHHHhhHHHhhhhhhcCChHHHHH---hhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhC---CCCCCHHHHHHHhc
Q 009645 81 LFFICLLPPIIFNAGFQVKKKQFFQ---NFII---INLFGVVGTLISFGIISIGSAKLFMKFG---LTFWDQGDFLALGA 151 (530)
Q Consensus 81 ~~~~i~L~~ilF~aG~~l~~~~~~~---~~~~---il~la~~g~~i~~~~~~~~~~~l~~~~~---~~~l~~~~alllGa 151 (530)
..-+.++.+--|..|+|++.+-..- +.++ -..-|+.|++.++. .|+.+..-+ ..|| +
T Consensus 62 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAl-----iy~~~n~~~~~~~~GW---------a 127 (388)
T PRK09561 62 WINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPAL-----IYLLFNYADPVTREGW---------A 127 (388)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCCcccCcc---------c
Confidence 4556777788889999998664421 1222 23345566666643 344443200 0122 4
Q ss_pred ccccccHHHHHHHhccc--CCc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009645 152 ILSATDTVCTLQVLNQE--DTP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAV 228 (530)
Q Consensus 152 ilsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~ 228 (530)
+=.|||.+-++.++.=. +.| .++..+..=+++||..++++-.++-+ +.-++. +......
T Consensus 128 IP~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt-----~~i~~~-------~L~~a~~------ 189 (388)
T PRK09561 128 IPAATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT-----SDLSMV-------SLGVAAV------ 189 (388)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC-----CCccHH-------HHHHHHH------
Confidence 55789999999998654 466 59999999999999999987654321 111211 1111111
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHh
Q 009645 229 GLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFI 308 (530)
Q Consensus 229 G~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l 308 (530)
....-+.+++... . .....+......++.--.-|.++-+|-+..|+++-.+.++..+ --++.+|..+.....
T Consensus 190 ~~~~l~~ln~~~v----~--~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~--pl~rleh~L~p~v~~ 261 (388)
T PRK09561 190 AIAVLAVLNLCGV----R--RTSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRS--PAERLEHGLHPWVAF 261 (388)
T ss_pred HHHHHHHHHHcCC----c--cchHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCC--HHHHHHHHhhhhhhh
Confidence 1112233444321 1 1222233444555555567888999999999999875432211 123344544444433
Q ss_pred hhhhhhhh--hcccchhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCCccceeeeEec
Q 009645 309 SETFIFLY--VGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLAND-SPIDKIGFKQQVTIWWA 385 (530)
Q Consensus 309 ~~~~~Fv~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 385 (530)
....+|.+ .|..+.... .+.. .. . ....+.+..+++|.++++..+++..+++. +.+.+.+|++..-.+.
T Consensus 262 ~IlPlFAfaNAGV~l~~~~-~~~~--~~--p--v~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~- 333 (388)
T PRK09561 262 LILPLFAFANAGVSLQGVT-LDGL--TS--P--LPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV- 333 (388)
T ss_pred eeHHHHHhhcCCeeeccCc-HHhh--cC--c--HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-
Confidence 33334444 566653221 1110 01 1 22234456789999999999998877664 4567888888755442
Q ss_pred CCchhhHHHHhh
Q 009645 386 GLMRGAVSVALA 397 (530)
Q Consensus 386 Gl~RGava~aLa 397 (530)
-+.+.+-++
T Consensus 334 ---L~GIGFTmS 342 (388)
T PRK09561 334 ---LCGIGFTMS 342 (388)
T ss_pred ---HHHHHHHHH
Confidence 344444444
No 23
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.11 E-value=0.043 Score=57.09 Aligned_cols=255 Identities=15% Similarity=0.129 Sum_probs=142.2
Q ss_pred HHHHHhhHHHhhhhhhcCChHHHHH---hhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHh-ccc
Q 009645 81 LFFICLLPPIIFNAGFQVKKKQFFQ---NFII---INLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALG-AIL 153 (530)
Q Consensus 81 ~~~~i~L~~ilF~aG~~l~~~~~~~---~~~~---il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllG-ail 153 (530)
..-+.++.+--|..|+|++.+-..- +.++ -..-|+.|++++++ .|+.+.. +. + . .=| +|=
T Consensus 66 wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAl-----Iy~~~n~-~~---~--~--~~GWgIP 132 (423)
T PRK14855 66 WVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAA-----LYTALNA-GG---P--G--ASGWGVP 132 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHH-----HHheeec-CC---C--c--cCccccc
Confidence 4556777788889999998664421 2222 23345566666643 3444422 11 1 0 112 466
Q ss_pred ccccHHHHHHHhcccC--Cc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 154 SATDTVCTLQVLNQED--TP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGL 230 (530)
Q Consensus 154 saTdpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~ 230 (530)
.|||.+-++.++.=.| .| .++..+..=+++||..||++-.++-+ +..++.. .... +.+.
T Consensus 133 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt-----~~i~~~~-------L~~a------~~~~ 194 (423)
T PRK14855 133 MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT-----SGLNLLA-------LLLA------ALTW 194 (423)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC-----CCCCHHH-------HHHH------HHHH
Confidence 8899999999987554 67 59999999999999999987554321 1112111 1111 1111
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhccccccccc-------------------
Q 009645 231 MSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNIT------------------- 291 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~------------------- 291 (530)
..-+++++... ......+......++.--.-|.+.-+|-+..|+++-.+.+.+..
T Consensus 195 ~~l~~ln~~~v------~~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (423)
T PRK14855 195 ALALLAGRLGV------TSLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGA 268 (423)
T ss_pred HHHHHHHHcCC------ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhH
Confidence 22233444321 11222233444555555566888999999999999764111110
Q ss_pred -----c------cc-hhHHHHHHHHHHHhhhhhhhhh--hcccchhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHH
Q 009645 292 -----E------SS-RVTTKHTFATLSFISETFIFLY--VGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVF 357 (530)
Q Consensus 292 -----~------~~-~~~~~~~~~~l~~l~~~~~Fv~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~ 357 (530)
+ ++ -++.+|..+........-+|.+ .|+.+.... . . . ....+.+..+++|.++++
T Consensus 269 ~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~------~--p--v~lGI~~GLvvGK~lGI~ 337 (423)
T PRK14855 269 RLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-L------G--T--VSLGVFLGLLLGKPLGVV 337 (423)
T ss_pred HHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-C------C--c--HHHHHHHHHHhcchHHHH
Confidence 0 00 1234444443333333333444 566653211 1 0 1 223345567899999999
Q ss_pred HHHHHhhhhcC-CCCCCCCccceeeeE
Q 009645 358 SVSFLSNLAND-SPIDKIGFKQQVTIW 383 (530)
Q Consensus 358 ~~~~~~~~~~~-~~~~~~~~~~~~~i~ 383 (530)
..+++.-+++. +.+.+.+|++..-.+
T Consensus 338 ~~s~lavkl~~a~lP~g~~w~~l~gv~ 364 (423)
T PRK14855 338 GGAWLAVRLGLASLPRRVNWLHMLGAG 364 (423)
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 99998876654 456788888865444
No 24
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.08 E-value=0.04 Score=57.60 Aligned_cols=269 Identities=14% Similarity=0.123 Sum_probs=147.4
Q ss_pred HHHHHhhHHHhhhhhhcCChHHHHH---hhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHh-ccc
Q 009645 81 LFFICLLPPIIFNAGFQVKKKQFFQ---NFII---INLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALG-AIL 153 (530)
Q Consensus 81 ~~~~i~L~~ilF~aG~~l~~~~~~~---~~~~---il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllG-ail 153 (530)
..-+.++.+--|..|+|++.+-..- +.++ -..-|+.|++++.. .|+.+.. +.+ . .=| +|=
T Consensus 71 wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAl-----IY~~~n~-~~~------~-~~GWgIP 137 (438)
T PRK14856 71 WIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGL-----IYFFLNA-DTP------S-QHGFGIP 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHH-----HHhheec-CCC------c-cCccccc
Confidence 4556777788899999998664321 1122 23345566666643 3444432 100 0 112 456
Q ss_pred ccccHHHHHHHhccc--CCc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 154 SATDTVCTLQVLNQE--DTP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGL 230 (530)
Q Consensus 154 saTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~ 230 (530)
.|||.+-++.++.=. +.| .++..+..=+++||.-||++-.++-+ +..++.. ... .+.+.
T Consensus 138 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt-----~~i~~~~-------L~~------a~~~~ 199 (438)
T PRK14856 138 MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT-----TNLKFAW-------LLG------ALGVV 199 (438)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC-----CCCcHHH-------HHH------HHHHH
Confidence 789999999998654 467 69999999999999999987654321 1112211 111 11122
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhccccccccc-------------------
Q 009645 231 MSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNIT------------------- 291 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~------------------- 291 (530)
..-+++++... . .....+......++.--.=|.++-+|-+..|+++-.+.+.+..
T Consensus 200 ~~l~~ln~~~v----~--~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T PRK14856 200 LVLAVLNRLNV----R--SLIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGAL 273 (438)
T ss_pred HHHHHHHHcCC----c--cccHHHHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccc
Confidence 22334454421 1 1222233444445555556888889999999998754322100
Q ss_pred ---cc---------------c-hhHHHHHHHHHHHhhhhhhhhh--hcccchhhhhhhhhcCCCchHHHHHHHHHHHHHH
Q 009645 292 ---ES---------------S-RVTTKHTFATLSFISETFIFLY--VGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLV 350 (530)
Q Consensus 292 ---~~---------------~-~~~~~~~~~~l~~l~~~~~Fv~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 350 (530)
++ + -++.+|..+.........+|.+ .|+.+... .... .. . ....+.+..++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~-~~~~---~~--p--v~lGI~~GLvv 345 (438)
T PRK14856 274 LTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSS-INLE---VD--K--VLLGVILGLCL 345 (438)
T ss_pred cccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccc-hhhc---cC--c--HHHHHHHHHHh
Confidence 00 0 1234444444333333334444 56665321 1110 01 1 22334556789
Q ss_pred HHHHHHHHHHHHhhhhcC-CCCCCCCccceeeeEecCCchhhHHHHhhc
Q 009645 351 GRAASVFSVSFLSNLAND-SPIDKIGFKQQVTIWWAGLMRGAVSVALAY 398 (530)
Q Consensus 351 ~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~Gl~RGava~aLa~ 398 (530)
+|.++++..+++..+++. +.+.+.+|++..-.+. -+.+.+-+++
T Consensus 346 GK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~----LaGIGFTmSL 390 (438)
T PRK14856 346 GKPLGIFLITFISEKLKITARPKGISWWHILGAGL----LAGIGFTMSM 390 (438)
T ss_pred cchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH----HHHHHHHHHH
Confidence 999999999999877764 4567888888654442 3445444443
No 25
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.06 E-value=0.33 Score=49.84 Aligned_cols=110 Identities=21% Similarity=0.169 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhh------ccccchHHHHHHHHHHHHHHHHHhcCCCcccccccCh---hHHHHHhhHHHhhhhhhcCC
Q 009645 29 LVSACIVIGHLLQK------TRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDE---DLFFICLLPPIIFNAGFQVK 99 (530)
Q Consensus 29 ll~~~~~~~~l~~~------~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~aG~~l~ 99 (530)
+.++..++|+.++| +..+||++..=++..++++..+.... .. .++|. +.|..+ .--..|+..+
T Consensus 13 ~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~-~~---~~fd~~l~~~fmli----FFttiglsa~ 84 (404)
T COG0786 13 LAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGG-VS---LNFDTSLQDVFMLI----FFATIGLSAS 84 (404)
T ss_pred HHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcce-EE---EeCCcccccHHHHH----HHHHhccccc
Confidence 34444567777775 24589998877777777776653321 11 22322 223221 1124799999
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhCCCCCCHHHHHHHhcc
Q 009645 100 KKQFFQNFIIINLFGVVGTLISFGI--ISIGSAKLFMKFGLTFWDQGDFLALGAI 152 (530)
Q Consensus 100 ~~~~~~~~~~il~la~~g~~i~~~~--~~~~~~~l~~~~~~~~l~~~~alllGai 152 (530)
.+.+||-+++..++......+...- ++.....++ +++...+++-|++
T Consensus 85 ~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~l------gidpl~gllagsI 133 (404)
T COG0786 85 FKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLL------GLDPLIGLLAGSI 133 (404)
T ss_pred hhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHc------CccHHHHHHhcce
Confidence 9999999998777665555443321 222222223 5666666666654
No 26
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=96.81 E-value=0.0052 Score=62.93 Aligned_cols=261 Identities=16% Similarity=0.159 Sum_probs=130.9
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHHH---hhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHh-cc
Q 009645 80 DLFFICLLPPIIFNAGFQVKKKQFFQ---NFII---INLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALG-AI 152 (530)
Q Consensus 80 ~~~~~i~L~~ilF~aG~~l~~~~~~~---~~~~---il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllG-ai 152 (530)
+.+-+.++.+--|.+|+|++.+-..- +.++ -..-|+.|++.+.. .|..+.. +-+ + -.=| ++
T Consensus 57 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----Iyl~~n~----~~~--~-~~~GW~I 124 (378)
T PF06965_consen 57 HWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----IYLAFNA----GGP--E-AAHGWAI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----HHGGG------SST--T-HHHHTSS
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----HHheeec----CCC--C-cCceEEe
Confidence 35567788888899999998664321 1121 23345566666533 3444421 111 1 1222 67
Q ss_pred cccccHHHHHHHhccc--CCc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009645 153 LSATDTVCTLQVLNQE--DTP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVG 229 (530)
Q Consensus 153 lsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G 229 (530)
=.+||.+-++.++.=. +.| .++..+..=+++||..+++.-.++-+ +..++ .+.... +.+
T Consensus 125 P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt-----~~i~~-------~~L~~a------~~~ 186 (378)
T PF06965_consen 125 PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT-----DGISL-------LWLLLA------AAA 186 (378)
T ss_dssp SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------H-------HHHHHH------HHH
T ss_pred cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC-----CCCCH-------HHHHHH------HHH
Confidence 7899999999998754 466 59999999999999999988765432 11111 111111 111
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccc--cccchhHHHHHHHHHHH
Q 009645 230 LMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNI--TESSRVTTKHTFATLSF 307 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 307 (530)
...-+.++|.. ... ....+......++.-..-|.++-+|-+..|+++-.+.+.+. .++.-++.+|..+....
T Consensus 187 ~~~l~~l~r~~----v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~ 260 (378)
T PF06965_consen 187 LLLLFVLNRLG----VRS--LWPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVA 260 (378)
T ss_dssp HHHHHHHHHTT---------THHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC----Cce--ehHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhh
Confidence 22223344432 111 22223334445555556788888999999999987765532 11122344555554433
Q ss_pred hhhhhhhh--hhcccchhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCCccceeeeE
Q 009645 308 ISETFIFL--YVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLAND-SPIDKIGFKQQVTIW 383 (530)
Q Consensus 308 l~~~~~Fv--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~ 383 (530)
..-..+|. =.|..+.....-+. .-.....+.+..+++|.++++..+++..+.+. +.+.+.+|++..-++
T Consensus 261 ~~IlPlFAlaNAGV~l~~~~~~~~-------~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~ 332 (378)
T PF06965_consen 261 FVILPLFALANAGVSLSGSSLGDL-------TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVG 332 (378)
T ss_dssp HTHHHHHHHHHS----SSS---TH-------HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHH
T ss_pred hhhHHhHhheeCceEEecCchHhh-------hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 33333344 45666543220000 01111223446789999999988888766553 356778888875554
No 27
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=96.79 E-value=0.11 Score=53.17 Aligned_cols=259 Identities=13% Similarity=0.132 Sum_probs=141.4
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHH---HhhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHh-cc
Q 009645 80 DLFFICLLPPIIFNAGFQVKKKQFF---QNFII---INLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALG-AI 152 (530)
Q Consensus 80 ~~~~~i~L~~ilF~aG~~l~~~~~~---~~~~~---il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllG-ai 152 (530)
+..-+.++.+--|..|+|++.+-.. +++++ -..-|+.|+++++. .|..+.. + ....=| ++
T Consensus 58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAl-----Iy~~~n~------~--~~~~~GW~I 124 (383)
T PRK14854 58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSL-----IYLSINH------D--IKVINGWAI 124 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHHhhcc------C--CcccCcccc
Confidence 3455667777788999999866432 12222 23345566666643 3444422 1 111112 45
Q ss_pred cccccHHHHHHHhccc--CCc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009645 153 LSATDTVCTLQVLNQE--DTP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVG 229 (530)
Q Consensus 153 lsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G 229 (530)
=.+||.+-++.++.=. +.| .++..+..-+++||..++++-.++-+ +.-++.. .......++
T Consensus 125 P~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt-----~~i~~~~-------L~~A~~~~~---- 188 (383)
T PRK14854 125 PSATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT-----KSLSLLS-------LSLGTLFIL---- 188 (383)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC-----CCccHHH-------HHHHHHHHH----
Confidence 5789999999998754 466 69999999999999999987654321 1112111 111111111
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhh
Q 009645 230 LMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFIS 309 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 309 (530)
.-+.++|.+ +... ....+......++.--.-|.+.-+|-+..|+++-.......+ --++.+|..+......
T Consensus 189 --~l~~~nr~~---~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~--pl~rleh~L~p~v~~~ 259 (383)
T PRK14854 189 --AMIICNRIF---KINR--SSVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDS--PANFMEDSLHPWIIYF 259 (383)
T ss_pred --HHHHHHHhc---CCce--ehHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCC--HHHHHHHHhhchHHHh
Confidence 112233321 1111 122233444555555566888999999999999864322111 1223444444333333
Q ss_pred hhhhhhh--hcccchhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCCccceeeeE
Q 009645 310 ETFIFLY--VGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLAND-SPIDKIGFKQQVTIW 383 (530)
Q Consensus 310 ~~~~Fv~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~ 383 (530)
..-+|.+ .|..+.... .+.. .. . ....+.+..+++|.++++..+++.-+.+. +.+.+.+|++..-.+
T Consensus 260 IlPlFA~aNAGV~l~~~~-~~~~--~~--p--v~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~ 329 (383)
T PRK14854 260 ILPVFAFANAGISFSGIS-FSIL--FE--P--ITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGIS 329 (383)
T ss_pred hHHHHHhhcCCeeeccCc-HHhh--cC--c--HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 3334444 566663322 1110 01 1 22234556789999999999998866543 356778888875544
No 28
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.60 E-value=0.75 Score=46.78 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=27.2
Q ss_pred ccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHH
Q 009645 76 LFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFII 109 (530)
Q Consensus 76 ~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~ 109 (530)
..+.|....+++..+.|..|++++.+++++..+.
T Consensus 26 ~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~ 59 (313)
T PF13593_consen 26 VIKPEYVIKYGVALIFFISGLSLPTEELKAALRN 59 (313)
T ss_pred ccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 4555567777888999999999999999887655
No 29
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.5 Score=47.13 Aligned_cols=270 Identities=15% Similarity=0.152 Sum_probs=137.4
Q ss_pred hhHHHhhhhhhcCChHHHHH---hhHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHH
Q 009645 86 LLPPIIFNAGFQVKKKQFFQ---NFIII---NLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTV 159 (530)
Q Consensus 86 ~L~~ilF~aG~~l~~~~~~~---~~~~i---l~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv 159 (530)
+..+.-+..|+|++++-+.- ++++. ..-|..|++.++ ..|.++.. +-+...===++=+|||.+
T Consensus 70 LMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PA-----liy~~~n~------~~p~~~~GWaIP~ATDiA 138 (390)
T COG3004 70 LMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPA-----LIYLALNA------GDPATLEGWAIPMATDIA 138 (390)
T ss_pred HHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhh-----hHhheeec------CChhhhcCcCcccHHHHH
Confidence 34444466899998776643 33332 223334555543 22333321 111111111567899999
Q ss_pred HHHHHhcccC--Cc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 160 CTLQVLNQED--TP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYII 236 (530)
Q Consensus 160 ~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~ 236 (530)
-++.++.-.| +| .++.-+..-+++||.-+++.-.++-+ +.-+... ...+++.+.+ -..+
T Consensus 139 FAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt-----~~Ls~~a-------l~~a~~~i~v------L~~l 200 (390)
T COG3004 139 FALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT-----TDLSMAA-------LGIAALAIAV------LAVL 200 (390)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc-----CCccHHH-------HHHHHHHHHH------HHHH
Confidence 9999988654 67 58888999999999988887664322 1112111 1111111111 1233
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHH-HHHhhhh-hhh
Q 009645 237 RELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFAT-LSFISET-FIF 314 (530)
Q Consensus 237 ~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~-~~F 314 (530)
++.. .+. ....+.+....+..-..=|.+.-+|-++.|+++--.+.+..++ -++.+|..+. ..|..-+ +-|
T Consensus 201 N~~~----v~~--l~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~sp--l~~leh~L~pwvaf~IlPlFaF 272 (390)
T COG3004 201 NRLG----VRR--LSPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGESP--LERLEHALHPWVAFFILPLFAF 272 (390)
T ss_pred HHhC----chh--hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCc--HHHHHHHhhhhHHHHHHHHHHH
Confidence 4432 111 1222222222233323345566666666666665433222222 2234444443 3343333 335
Q ss_pred hhhcccchhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCCccceeeeEe-cCCchhhH
Q 009645 315 LYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLAND-SPIDKIGFKQQVTIWW-AGLMRGAV 392 (530)
Q Consensus 315 v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~-~Gl~RGav 392 (530)
.=.|.++...+.-+. .-.....+....+++|.++++..+|+.-+++- +.+++.+|++..-.+. +|. -=.+
T Consensus 273 aNAGvsl~g~~~~~l-------~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGI-GFTM 344 (390)
T COG3004 273 ANAGVSLQGVSLSGL-------TSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGI-GFTM 344 (390)
T ss_pred ccCCccccccccccc-------ccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhh-hHHH
Confidence 557777654331111 11122233456789999999999998765543 4577889988654332 442 2244
Q ss_pred HHHhhccc
Q 009645 393 SVALAYNK 400 (530)
Q Consensus 393 a~aLa~~~ 400 (530)
++-.+...
T Consensus 345 SlFI~~LA 352 (390)
T COG3004 345 SLFIASLA 352 (390)
T ss_pred HHHHHHHh
Confidence 55555443
No 30
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.93 E-value=2.2 Score=43.12 Aligned_cols=114 Identities=12% Similarity=0.126 Sum_probs=68.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 009645 44 RWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFG 123 (530)
Q Consensus 44 ~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~ 123 (530)
..++.....+++|+++|......++ .-..-..+..+.+.++++ -.-|.+++..++.+...+.+...+..+..+..
T Consensus 24 ~~l~~~~~AillG~~i~n~~~~~~~-~~~~Gi~~~~k~~Lr~gI----VLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNLFFGLPA-RFKPGIKFSSKKLLRLGI----VLLGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred cCccHHHHHHHHHHHHhhhccCCcH-HHHhHHHHHHHHHHHHHH----HHHCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4577888888889888851111111 101112333344555444 45688999999999998877777666655544
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHh---cccccccHHHHHHHhccc
Q 009645 124 IISIGSAKLFMKFGLTFWDQGDFLALG---AILSATDTVCTLQVLNQE 168 (530)
Q Consensus 124 ~~~~~~~~l~~~~~~~~l~~~~alllG---ailsaTdpv~v~~il~~~ 168 (530)
...+...-++ +++...+.++| +|..++.-+++.+++|..
T Consensus 99 ~~~~lg~r~~------~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~ 140 (305)
T PF03601_consen 99 LTYWLGRRLF------GLDRKLAILIAAGTSICGASAIAATAPVIKAK 140 (305)
T ss_pred HHHHHHHHHh------CCCHHHHHHHHhhcccchHHHHHHHcccccCC
Confidence 4333331233 77888888887 455566666666666643
No 31
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=95.20 E-value=4.7 Score=41.98 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhh------ccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHH
Q 009645 31 SACIVIGHLLQK------TRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFF 104 (530)
Q Consensus 31 ~~~~~~~~l~~~------~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~ 104 (530)
++..++|.++++ +..+|+++..=+++.++......... -...+|.+ +...++.+..-..|+..+.+.+|
T Consensus 13 ~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~----~~~~f~~~-l~~~lm~~fF~~igL~~~~~~lk 87 (368)
T PF03616_consen 13 SILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGG----ISISFDTS-LQDFLMIIFFTTIGLGASLKLLK 87 (368)
T ss_pred HHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCc----eEEEechh-HHHHHHHHHHHHHhhccchhhHH
Confidence 334445666663 35589876655555555544443221 11345543 22222222222468888888999
Q ss_pred HhhHHHHHHHHHHH
Q 009645 105 QNFIIINLFGVVGT 118 (530)
Q Consensus 105 ~~~~~il~la~~g~ 118 (530)
|-++.+..+....+
T Consensus 88 kgg~~~~~~~~~~~ 101 (368)
T PF03616_consen 88 KGGKAVLIFLLIAI 101 (368)
T ss_pred hhHHHHHHHHHHHH
Confidence 88887766655543
No 32
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.92 E-value=0.83 Score=50.88 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=51.3
Q ss_pred HHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHH
Q 009645 81 LFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVC 160 (530)
Q Consensus 81 ~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~ 160 (530)
.|..+++|+.-...|+++|.+.+..++..++.+.+..++.-...+...+. .+ ++++.+++.+|..+++.....
T Consensus 265 pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~------g~~~~~al~~g~~L~~~Gef~ 337 (601)
T PRK03659 265 PFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY------GLRSSERMQFAGVLSQGGEFA 337 (601)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHhccccHH
Confidence 36677888888889999999999988776655544444444444333333 33 889999999998887766544
No 33
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.87 E-value=0.79 Score=51.24 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=49.1
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHH
Q 009645 82 FFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTV 159 (530)
Q Consensus 82 ~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv 159 (530)
|..+++|+.-...|+++|...+.+++..++.+.+..++.-.+.+...+.+ + ++++.+++.+|..++.-...
T Consensus 269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-~------g~~~~~a~~~gl~L~~~Gef 339 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-L------GVPRKQRRWFAVLLGQGGEF 339 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHhHHHHHHHHHhccccH
Confidence 56677877777789999999998887766555444444443433333333 3 89999999999888765443
No 34
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.77 E-value=1.1 Score=49.51 Aligned_cols=72 Identities=10% Similarity=-0.018 Sum_probs=45.4
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHH
Q 009645 82 FFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVC 160 (530)
Q Consensus 82 ~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~ 160 (530)
+...++|+.-...|+++|...+.++...++.+.+..++.-.+.....+ ..+ +.++.+++..|..+++.....
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~-~~~------g~~~~~a~~~gl~l~~~Gef~ 348 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLV-RLF------GHSRRTALTIAASLAQIGEFA 348 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh------CCChhhHHHHHHHHhcccchH
Confidence 445677777777999999999988765544433333332322222222 223 789999999998887655533
No 35
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=93.48 E-value=10 Score=38.87 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=64.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHH
Q 009645 45 WMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGI 124 (530)
Q Consensus 45 ~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~ 124 (530)
.++..+..+++|+++|.......+.....-.++..+.+.++++ -.-|.+++.+++.+...+.+......+..+...
T Consensus 30 ~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gI----VLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~ 105 (335)
T TIGR00698 30 ALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGI----TLYGFRLTFPYIADVGPNEIVADTLILTSTFFL 105 (335)
T ss_pred CCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHH----HHHCccccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3667777777777777532100000001112233334555544 346889999999999888776665544433332
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHh---cccccccHHHHHHHhccc
Q 009645 125 ISIGSAKLFMKFGLTFWDQGDFLALG---AILSATDTVCTLQVLNQE 168 (530)
Q Consensus 125 ~~~~~~~l~~~~~~~~l~~~~alllG---ailsaTdpv~v~~il~~~ 168 (530)
......-.+ +++...++++| +|..++.-+++.+++|..
T Consensus 106 ~~~~g~k~l------~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~ 146 (335)
T TIGR00698 106 TVFLGSSRL------KLDKQMSILLGAGSSICGAAAVAAIEPVIKAE 146 (335)
T ss_pred HHHHHHHHh------CCChhHHHHHHcchhHHHHHHHHHhccccCCC
Confidence 222221223 77788888877 556666666666677643
No 36
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=93.19 E-value=0.41 Score=44.89 Aligned_cols=129 Identities=14% Similarity=0.098 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCC-----hHHHHHhhHHHHHHHHHHHHHHHHHH
Q 009645 51 TALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVK-----KKQFFQNFIIINLFGVVGTLISFGII 125 (530)
Q Consensus 51 ~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~-----~~~~~~~~~~il~la~~g~~i~~~~~ 125 (530)
..+++|+++|..... + .... +-...+.|-.++|..|.++- .|++++..++++.+.+.. ++..++.
T Consensus 3 ~~li~Gi~lG~~~~~--~------~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t-IlGSllg 72 (191)
T PF03956_consen 3 IALILGILLGYFLRP--P------FSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT-ILGSLLG 72 (191)
T ss_pred eeHHHHHHHHHHhcc--c------cccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHH
Confidence 456789999854331 1 1111 33666778888999999985 345666667787777544 4445566
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCCchhhhhhhhhhhhhhHHHHHHHHHHHH
Q 009645 126 SIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQK 197 (530)
Q Consensus 126 ~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~ 197 (530)
+..+..++ ++++.+++..|+=+.==+-.. ..+.|.+.|.+.++-+=.-++=+.+++++.-.+..
T Consensus 73 g~l~~~ll------~~~~~~~lav~sG~GwYSlsg--~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 73 GLLASLLL------GLSLKESLAVASGFGWYSLSG--VLITQLYGPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HHHHHHHh------cCCHHHHHHHHccCcHHHhHH--HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 899999999887653322221 22345555566665555555556666666655544
No 37
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.12 E-value=2 Score=40.01 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=49.5
Q ss_pred HhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHH
Q 009645 85 CLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQV 164 (530)
Q Consensus 85 i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~i 164 (530)
+.+..++|..|.+++.+++++..++--.+ +.+.+....+.-+.++.+... -++....+..|.++.+..|....+-
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l-~~~l~~~~~i~Plla~~l~~~----~~~~~~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLL-LIGLLAQFLIMPLLAFGLAWL----LLPLSPALALGLLLVAACPGGPASN 76 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHH-HHHHHHHHHHHHHHHHHHH-H----HTT--HHHHHHHHHHHHS-B-THHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHhcCCcHHHHH
Confidence 35667899999999999998776552211 233333444433333332101 1234445666666655555554443
Q ss_pred hc-cc--CCchhhhhhhhhhhhhhHHHHHHHHHHHHHh
Q 009645 165 LN-QE--DTPLLYSLVFGEGVVNDATSIVLFNAIQKFS 199 (530)
Q Consensus 165 l~-~~--~~~~l~~ll~gEs~lND~~aivlf~~~~~~~ 199 (530)
.- +. |+.. +-.+-..+|...+++..=....+.
T Consensus 77 ~~t~l~~Gd~~---ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 77 VFTYLAGGDVA---LSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp HHHHHTT--HH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcc---cccceeeHHHHHHHHHHHHHHHHH
Confidence 32 21 2222 222334556666666554444443
No 38
>COG2855 Predicted membrane protein [Function unknown]
Probab=93.04 E-value=1.9 Score=43.65 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=79.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 009645 44 RWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFG 123 (530)
Q Consensus 44 ~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~ 123 (530)
..+|....+++.|+++|.... .+.....-.++....+.++++ -.-|++++..++.+...+.+...... +..++
T Consensus 35 ~~l~al~lAIllGi~l~~l~~--~~~~~~~GI~fs~k~LLr~gI----vLlG~~ltl~~i~~~G~~~v~~~~~~-l~~t~ 107 (334)
T COG2855 35 LGLSALTLAILLGILLGILPQ--IPAQTSAGITFSSKKLLRLGI----VLLGFRLTLSDIADVGGSGVLIIAIT-LSSTF 107 (334)
T ss_pred cCchHHHHHHHHHHHHhcccc--chhhhccchhhhHHHHHHHHH----HHHcceeeHHHHHHcCccHHHHHHHH-HHHHH
Confidence 447788999999999993221 111112224555555555554 45688999999998888766555333 33334
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHh---cccccccHHHHHHHhcccCCchhhhhhhhhhhhhhHHHHHHHHHHHH
Q 009645 124 IISIGSAKLFMKFGLTFWDQGDFLALG---AILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQK 197 (530)
Q Consensus 124 ~~~~~~~~l~~~~~~~~l~~~~alllG---ailsaTdpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~ 197 (530)
+.+...--++ ++++..+++.| +|..+..-+++.++.|... ++....+..-.+++- +++.+|=.+-.
T Consensus 108 ~~~~~lg~~l------gld~~~a~Lia~GssICGasAiaA~~pvika~~-~eva~aIa~V~lfgt-ia~llyP~l~~ 176 (334)
T COG2855 108 LFAYFLGKLL------GLDKKLALLIAAGSSICGASAIAATAPVIKAEE-EEVAVAIAVVVLFGT-LAMLLYPLLYP 176 (334)
T ss_pred HHHHHHHHHh------CCCHHHHHHHHccchhhHHHHHHHhCCcCCCCc-cccceehhhHHHHHH-HHHHHHHHHHH
Confidence 4333333344 89999999998 4555555566666666322 123333333333433 44444444333
No 39
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=92.91 E-value=1.3 Score=51.29 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=42.0
Q ss_pred HHHhhHHHhhhhhhcCChHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHH
Q 009645 83 FICLLPPIIFNAGFQVKKKQFFQNF--IIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVC 160 (530)
Q Consensus 83 ~~i~L~~ilF~aG~~l~~~~~~~~~--~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~ 160 (530)
..+++|+-....|+++|.+.+.... ..+..+.+++++.-.+...+.+ .++ ++++.+++.+|.++++---+.
T Consensus 324 ~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a-~~~------g~~~~eal~lG~lm~~kG~~~ 396 (832)
T PLN03159 324 SGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIA-FFY------TMPFREGITLGFLMNTKGLVE 396 (832)
T ss_pred HHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH-HHh------CCCHHHHHHHHHHHhcccHHH
Confidence 4577888888899999998875322 1222222222222212222222 223 899999999999988765433
No 40
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.86 E-value=1.8 Score=39.71 Aligned_cols=85 Identities=15% Similarity=0.091 Sum_probs=56.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCCh---HHHHHhhHHHHHHHHHHHHHH
Q 009645 45 WMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKK---KQFFQNFIIINLFGVVGTLIS 121 (530)
Q Consensus 45 ~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~---~~~~~~~~~il~la~~g~~i~ 121 (530)
++-.+.+.+++|+++|..-...+.. ...--++.+.+++|..-++..|++--. +.++++..+.+.+++.-+.++
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~----~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~ 97 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIF----LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVP 97 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCC----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3556779999999999654322111 011123457788888888888888774 456677677788887777777
Q ss_pred HHHHHHHHHHHH
Q 009645 122 FGIISIGSAKLF 133 (530)
Q Consensus 122 ~~~~~~~~~~l~ 133 (530)
.++.....++++
T Consensus 98 ~~~~~~~~~~~~ 109 (169)
T PF06826_consen 98 LLIALVIGRYLF 109 (169)
T ss_pred HHHHHHHHHHHc
Confidence 666666656555
No 41
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=92.36 E-value=14 Score=37.44 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=80.9
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHH
Q 009645 82 FFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCT 161 (530)
Q Consensus 82 ~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v 161 (530)
....++..|+|--|+.++.+++++..+.-... +.|...++.+.-+.++.+- + -++...-+..|-++-.+-|..+
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~-~----~~~l~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLA-K----LFPLPPELAVGLLLLGCCPGGV 112 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHH-H----HcCCCHHHHHhHHheeeCCCch
Confidence 44788999999999999999998876552221 1233333333322222221 1 2235556777777777777776
Q ss_pred HHHhcccCCc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhc-cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 162 LQVLNQEDTP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVH-VTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIREL 239 (530)
Q Consensus 162 ~~il~~~~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~-~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~ 239 (530)
.+..-..-.+ ++. +-.+...++..+++.+-=....+..+ ....+.++.+.+.+.+.+.-+++|.++-.....+.++.
T Consensus 113 ~S~~~t~lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~ 191 (319)
T COG0385 113 ASNAMTYLAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERL 191 (319)
T ss_pred hHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6643322111 111 11224444555555554444444332 12224556666777777777777766655555444443
No 42
>COG2431 Predicted membrane protein [Function unknown]
Probab=91.81 E-value=4.3 Score=39.79 Aligned_cols=88 Identities=20% Similarity=0.048 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCC-----hHHHHHhhHHHHHHHHHHHHHHHH
Q 009645 49 SVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVK-----KKQFFQNFIIINLFGVVGTLISFG 123 (530)
Q Consensus 49 ~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~-----~~~~~~~~~~il~la~~g~~i~~~ 123 (530)
.++..+.|+++|.+.... ..+++.-.++.|-.++|..|+++. .|+..=| ++.+..++ -++++..
T Consensus 109 ~~~~vl~g~~~G~l~~~~---------~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~-i~ilssl 177 (297)
T COG2431 109 LLGVVLLGLALGLLTGSF---------LNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAF-ITLLSSL 177 (297)
T ss_pred HHHHHHHHHHHHHHhccc---------ccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHH-HHHHHHH
Confidence 466777888888654321 122455667788888999999988 2233333 34455553 4456667
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHhccc
Q 009645 124 IISIGSAKLFMKFGLTFWDQGDFLALGAIL 153 (530)
Q Consensus 124 ~~~~~~~~l~~~~~~~~l~~~~alllGail 153 (530)
+.|....+++ ++|+.+++.+++=.
T Consensus 178 iGG~iaa~~l------~lpl~~~lAmasG~ 201 (297)
T COG2431 178 IGGLIAAFLL------DLPLTTGLAMASGF 201 (297)
T ss_pred HHHHHHHHHH------hccHHHHHHHHhcc
Confidence 7777777777 89999888877654
No 43
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=91.58 E-value=2 Score=45.31 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=47.5
Q ss_pred hHHHH-HhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccH
Q 009645 80 DLFFI-CLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDT 158 (530)
Q Consensus 80 ~~~~~-i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdp 158 (530)
+.+.+ +++|+--...|+++|.+.+.++...++.+....+..-.......++ .+ +++...++..|...++--.
T Consensus 271 ~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~-~~------g~~~~~~~~~g~~~~~~ge 343 (397)
T COG0475 271 EPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAAR-LL------GFSKRLALGIGLLLRQGGE 343 (397)
T ss_pred HhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-HH------cCcHHHHHHHHhhhhhhhH
Confidence 45777 8888888899999999999999988655554444333332222222 23 6677777777766655433
No 44
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=91.31 E-value=7 Score=36.56 Aligned_cols=82 Identities=20% Similarity=0.136 Sum_probs=53.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHhcCCCccccccc---------ChhHHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHH
Q 009645 44 RWMNQSVTALAFGLCTATVIILTTNGKISDILLF---------DEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFG 114 (530)
Q Consensus 44 ~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~---------~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la 114 (530)
.|+|.+...+++|+++..+......++. ...++ .-..+..+. +-..+++.|.++.||....-..--
T Consensus 38 Gr~hgSAIAI~lGL~lAy~gG~~TgG~k-GlaDi~lfsGiglmGGaMlRDfA----IvaTAf~v~~~e~kkaG~~G~vsL 112 (254)
T TIGR00808 38 GKLHGSAIAITMGLVLAYVGGVYTGGEK-GLADIAIFGGFGLMGGAMLRDLA----IVATAFEVDVKEVKKAGKVGMVAL 112 (254)
T ss_pred CCcchhHHHHHHHHHHHHHcccccCCcc-ccchhhhhcchhhhhhHHHHHHH----HHHHhhcCcHHHHHHcchHHHHHH
Confidence 5699999999999999875443332221 11111 111222322 357889999999999998877777
Q ss_pred HHHHHHHHHHHHHHHH
Q 009645 115 VVGTLISFGIISIGSA 130 (530)
Q Consensus 115 ~~g~~i~~~~~~~~~~ 130 (530)
++|+++++.+-...++
T Consensus 113 ~~G~v~~F~~Ga~vA~ 128 (254)
T TIGR00808 113 LLGCVIPFVIGAMVAW 128 (254)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888766544444
No 45
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=90.88 E-value=15 Score=35.08 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=46.5
Q ss_pred hhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhccc--ccccHHHHHHHhccc
Q 009645 91 IFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAIL--SATDTVCTLQVLNQE 168 (530)
Q Consensus 91 lF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGail--saTdpv~v~~il~~~ 168 (530)
-|..-+-=+++.+||||++++.-.+.|.+.........+.++ +++-. +.-+++ |.|.|.+ +.+-++.
T Consensus 74 AlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~-------g~~~~---~~~Sl~PkSvTTpiA-m~vs~~i 142 (230)
T COG1346 74 ALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF-------GLSPE---LILSLLPKSVTTPIA-MEVSESI 142 (230)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHH---HHHHhcccccccHHH-HHHHHhc
Confidence 333444456889999999999888888877655544444432 44433 333444 7788877 5777776
Q ss_pred C-Cchhh
Q 009645 169 D-TPLLY 174 (530)
Q Consensus 169 ~-~~~l~ 174 (530)
| .|.+.
T Consensus 143 GGip~lt 149 (230)
T COG1346 143 GGIPALT 149 (230)
T ss_pred CCchHHH
Confidence 5 66543
No 46
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=90.33 E-value=3 Score=42.03 Aligned_cols=141 Identities=20% Similarity=0.174 Sum_probs=87.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCC--hHHHHHhhHHHHHHHHHHHHHHHH
Q 009645 46 MNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVK--KKQFFQNFIIINLFGVVGTLISFG 123 (530)
Q Consensus 46 lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~--~~~~~~~~~~il~la~~g~~i~~~ 123 (530)
...++.+++-|+++|.+.. +.+. ...-.+-. -.|.-.|...+.+-|+.-- .+++||..+....++++.-++...
T Consensus 176 ~~~sv~LLlGgliIG~~~g--~~g~-~~i~pf~~-~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a~ 251 (327)
T PF05982_consen 176 TNKSVVLLLGGLIIGFLAG--PEGV-ESIKPFFV-DLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINAL 251 (327)
T ss_pred cCchHHHHHHHHHHhheeC--ccch-hhccchhh-ccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3456788888999995432 1111 11111211 2455667777888887743 567888888888888877777655
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccC---Cchhhhhh-hhhh-hhhhHHHHHHHHHHHH
Q 009645 124 IISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQED---TPLLYSLV-FGEG-VVNDATSIVLFNAIQK 197 (530)
Q Consensus 124 ~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~---~~~l~~ll-~gEs-~lND~~aivlf~~~~~ 197 (530)
+..... .++ +++...+.+++.+.++-+=.++=+.+|.-- +|-+|-.. .|-. =+|=.++|.+|..+..
T Consensus 252 ig~~lg-~~~------gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SLgiTFPfNi~iGIPLY~~la~ 323 (327)
T PF05982_consen 252 IGIGLG-WLL------GLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASLGITFPFNILIGIPLYYALAQ 323 (327)
T ss_pred HHHHHH-HHh------CCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHHhcccchhHhhccHHHHHHHH
Confidence 543333 344 899999999999988777777666665431 23233211 1111 3677777887765443
No 47
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=90.28 E-value=22 Score=35.81 Aligned_cols=129 Identities=16% Similarity=0.092 Sum_probs=79.5
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHH--HHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHH
Q 009645 40 LQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFF--ICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVG 117 (530)
Q Consensus 40 ~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~--~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g 117 (530)
.+..+|+|. +.+++=+++|..+.-+.|+.....=.+...++- ...+...+|-.|-++|.|+..+..++...+-+.=
T Consensus 4 ~~~i~kiPG--G~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K 81 (314)
T PF03812_consen 4 KKTIEKIPG--GMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVK 81 (314)
T ss_pred hHhhccCCC--ceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHH
Confidence 344556785 566667777766554333221111123332221 2456777999999999999988888866665555
Q ss_pred HHHHHHHHHHHHHHHHhhhCCC-C-CCHHHHHHHhcccccccHHHHHHHhcccCCc
Q 009645 118 TLISFGIISIGSAKLFMKFGLT-F-WDQGDFLALGAILSATDTVCTLQVLNQEDTP 171 (530)
Q Consensus 118 ~~i~~~~~~~~~~~l~~~~~~~-~-l~~~~alllGailsaTdpv~v~~il~~~~~~ 171 (530)
+++. +++++....+++.-|+. + +-=...+.+=+.++.+.+..-+++.+|+|.+
T Consensus 82 ~~~~-~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~ 136 (314)
T PF03812_consen 82 FIIG-ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDE 136 (314)
T ss_pred HHHH-HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCH
Confidence 4443 44455555555432210 0 1223567777889999999999999999876
No 48
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=87.57 E-value=19 Score=36.72 Aligned_cols=107 Identities=11% Similarity=-0.023 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhh
Q 009645 28 ALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNF 107 (530)
Q Consensus 28 ~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~ 107 (530)
.++..+...+.+.++ .++|. +.++..++.+.......... ... |+.+....-..+=...|.+.+.+.+++..
T Consensus 159 ~l~~~~~~g~~l~~~-l~iPa--~~llGpml~~a~~~~~~~~~----~~~-P~~l~~~aqv~iG~~iG~~f~~~~l~~~~ 230 (318)
T PF05145_consen 159 LLALAALAGGLLARR-LRIPA--PWLLGPMLVSAILNLFGGPS----FSL-PPWLVNAAQVLIGASIGSRFTRETLRELR 230 (318)
T ss_pred HHHHHHHHHHHHHHH-hCCCc--HHHHHHHHHHHHHHHHhCCC----CCC-CHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 344445555555555 44774 33444444443333321111 223 45566777777788899999987766655
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHH
Q 009645 108 IIINLF--GVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLA 148 (530)
Q Consensus 108 ~~il~l--a~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~all 148 (530)
+.+... .....+..+...+...+.+. ++++.++++
T Consensus 231 ~~~~~~l~~~~~~l~~~~~~a~~l~~~~------~~~~~t~~L 267 (318)
T PF05145_consen 231 RLLPPALLSTLLLLALCALFAWLLSRLT------GIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence 442211 11222333344444444444 777776654
No 49
>PRK03818 putative transporter; Validated
Probab=87.43 E-value=8.2 Score=42.51 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccccChh---HHHHHhhHHHhhhhhhcCChH---HHHHhhHHHHHHHHHHHHHHH
Q 009645 49 SVTALAFGLCTATVIILTTNGKISDILLFDED---LFFICLLPPIIFNAGFQVKKK---QFFQNFIIINLFGVVGTLISF 122 (530)
Q Consensus 49 ~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~---~~~~i~L~~ilF~aG~~l~~~---~~~~~~~~il~la~~g~~i~~ 122 (530)
..+.+++|+++|.+.. ... ...+++ .+..++|...+|..|++.-.. .++++..+...++++.++++.
T Consensus 33 ~~g~L~~gl~~G~~~~----~~~---~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~ 105 (552)
T PRK03818 33 IGGVLFGGIIVGHFVS----QFG---LTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGG 105 (552)
T ss_pred cHHHHHHHHHHhcccc----ccC---cccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4788889999984221 111 122232 356788888899999998854 556655566666666665554
Q ss_pred HHHHHHHHHHH
Q 009645 123 GIISIGSAKLF 133 (530)
Q Consensus 123 ~~~~~~~~~l~ 133 (530)
++ ++.+++++
T Consensus 106 ~~-~~~~~~~~ 115 (552)
T PRK03818 106 LV-TAILHKLF 115 (552)
T ss_pred HH-HHHHHHHh
Confidence 44 55556665
No 50
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=86.88 E-value=23 Score=31.92 Aligned_cols=104 Identities=13% Similarity=-0.057 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHH
Q 009645 30 VSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFII 109 (530)
Q Consensus 30 l~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~ 109 (530)
+..+.+.+.++++ .++|- +.++..++.+........ .. .. -|+.+...+...+-...|.+.+.+.+++..+.
T Consensus 4 ~~~~~~~g~l~~~-l~~Pa--~~llG~mi~~~~~~~~~~-~~---~~-~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~ 75 (156)
T TIGR03082 4 LLVGLAGGLLASL-LGLPA--AWLLGPLLAGAVLSLAGG-LE---IT-LPPWLLALAQVVIGILIGSRFTREVLAELKRL 75 (156)
T ss_pred HHHHHHHHHHHHH-HCCCc--HHHHHHHHHHHHHHhcCC-cc---CC-CCHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3455566667655 34764 344445555544432211 11 22 24456677777888899999998776665544
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHH
Q 009645 110 INL--FGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFL 147 (530)
Q Consensus 110 il~--la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~al 147 (530)
... .....++..+++.+...+.+. ++++.+++
T Consensus 76 ~~~~l~~~~~~l~~~~~~~~~l~~~~------~~~~~ta~ 109 (156)
T TIGR03082 76 WPAALLSTVLLLALSALLAWLLARLT------GVDPLTAF 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHH
Confidence 322 222223333333344444443 78888875
No 51
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=86.37 E-value=1.6 Score=41.57 Aligned_cols=80 Identities=13% Similarity=0.008 Sum_probs=65.9
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHH
Q 009645 82 FFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCT 161 (530)
Q Consensus 82 ~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v 161 (530)
...+.+-++.-++|+++++|.+++....+..+++....+.+..-+...++++ +.+|.++++.|.++.+..+...
T Consensus 159 l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l------~~~ii~~~l~g~v~~~i~~~~~ 232 (252)
T KOG3826|consen 159 LRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLL------AGPIIWAFLLGIVIGSILWRFP 232 (252)
T ss_pred hhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHh------ccchHHHhccccceeeeecCCc
Confidence 4456777888899999999999999999999888888887777777777776 8999999999999999888766
Q ss_pred HHHhcc
Q 009645 162 LQVLNQ 167 (530)
Q Consensus 162 ~~il~~ 167 (530)
.+-...
T Consensus 233 r~~~~h 238 (252)
T KOG3826|consen 233 RPDYQH 238 (252)
T ss_pred cccchh
Confidence 554443
No 52
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=85.98 E-value=8 Score=42.68 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhcc----ccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChH---H
Q 009645 30 VSACIVIGHLLQKTR----WMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKK---Q 102 (530)
Q Consensus 30 l~~~~~~~~l~~~~~----~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~---~ 102 (530)
+++++.+|+++-|.+ .+-.+.+.+++|+++|-+ + ..+++ .+..+++...+|..|++.-+. .
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~------g-----~~i~~-~v~~~gl~lFvy~vG~~~Gp~Ff~~ 82 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQL------G-----IQIDP-GVKAVFFALFIFAIGYEVGPQFFAS 82 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhc------C-----CCCCh-HHHHHHHHHHHHHhhhccCHHHHHH
Confidence 344455666666532 244467889999999932 1 12333 466788889999999999865 4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC--HHHHHHHhcccccccHHHHHHHhcccC
Q 009645 103 FFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWD--QGDFLALGAILSATDTVCTLQVLNQED 169 (530)
Q Consensus 103 ~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~--~~~alllGailsaTdpv~v~~il~~~~ 169 (530)
+||+..+...++++-++.. +++++.+.+++ +++ ....++-||.-+...-.++...+++.+
T Consensus 83 l~~~g~~~~~~a~~~~~~~-~~~~~~~~~~~------g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 83 LKKDGLREIILALVFAVSG-LITVYALAKIF------GLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred HHhccHHHHHHHHHHHHHH-HHHHHHHHHHh------CCCHHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 4555555666665554444 34445555555 554 445667777665555555555555444
No 53
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=85.18 E-value=7.1 Score=39.28 Aligned_cols=58 Identities=21% Similarity=0.111 Sum_probs=41.5
Q ss_pred hhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHh
Q 009645 86 LLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALG 150 (530)
Q Consensus 86 ~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllG 150 (530)
.+|...|.-|.++|.++..+...+.+.+++..++++... +....-++ +.+-..+++.|
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~-~~~i~rll------g~~~~~g~li~ 254 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF-NIFADRLV------GGTGIAGAAAS 254 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHh------CCChhHHHHHH
Confidence 778888999999999999999999888887666554333 32222233 55666666666
No 54
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=83.60 E-value=24 Score=37.13 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhc-CC
Q 009645 21 HSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQ-VK 99 (530)
Q Consensus 21 ~~i~~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~-l~ 99 (530)
..+-.-..+.+....+|.++++...+|.....++.=+++=. ....|+ ..++-...-.+.+..-..+++++-.|.. +|
T Consensus 246 ~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~-~~lvP~-~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~ 323 (414)
T PF03390_consen 246 SDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKA-FGLVPE-SLEEGAKQWYKFFSKNLTWPLLVGIGVAYTD 323 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc
Confidence 33333344455566678888876679988877666544431 111111 1000000111356678899999999999 99
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhc-cc---ccccHHHHHHHhcccC-Cc--h
Q 009645 100 KKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGA-IL---SATDTVCTLQVLNQED-TP--L 172 (530)
Q Consensus 100 ~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGa-il---saTdpv~v~~il~~~~-~~--~ 172 (530)
++++.+.+....++-+..+++...+.+...-.++ ++-+.|+-+-+. +. .-|-=+++++--++.+ .| +
T Consensus 324 l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~------g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~LmpFAQ 397 (414)
T PF03390_consen 324 LNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLV------GFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMPFAQ 397 (414)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHhhhcccCCCCCCcchheehhhhcccccHHH
Confidence 9999998866655555555665555555544455 665555544444 33 2344455566556655 34 4
Q ss_pred hhhhhhhh
Q 009645 173 LYSLVFGE 180 (530)
Q Consensus 173 l~~ll~gE 180 (530)
+.+.+-|.
T Consensus 398 IstRiGGA 405 (414)
T PF03390_consen 398 ISTRIGGA 405 (414)
T ss_pred HHHhhhhH
Confidence 54444443
No 55
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=83.38 E-value=48 Score=34.52 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHh----h-ccccchHHHHHHHHHHHHHHHHHhcCCCcccccccCh---hHHHHHhhHHHhhhhhhcCCh
Q 009645 29 LVSACIVIGHLLQ----K-TRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDE---DLFFICLLPPIIFNAGFQVKK 100 (530)
Q Consensus 29 ll~~~~~~~~l~~----~-~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~aG~~l~~ 100 (530)
++.++..+|+++. + ...+|.-+..+++|+++-.+...... ...|. +.+..+.|-..+..+=..+|.
T Consensus 225 ~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~------~~id~~~i~~I~~~sL~~fl~~almsl~l 298 (368)
T PF03616_consen 225 LILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGK------YKIDRKTIDRISGISLDLFLAMALMSLKL 298 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCc------ccCCHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3334444444444 2 34578888888888888765543221 11333 345667777888888889999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 009645 101 KQFFQNFIIINLFGVVGTLISFGI 124 (530)
Q Consensus 101 ~~~~~~~~~il~la~~g~~i~~~~ 124 (530)
..+.++..+.+.+-+.++++..+.
T Consensus 299 ~~l~~~a~Plliil~~q~i~~~~f 322 (368)
T PF03616_consen 299 WVLADYALPLLIILAVQTILMVLF 322 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988777777765544
No 56
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=83.19 E-value=57 Score=33.25 Aligned_cols=175 Identities=14% Similarity=0.088 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcccccccCh-hHHHHHhhHHHhhhhhhcCChHHHHHhh---HHHHHHHHHHHHHHHH
Q 009645 48 QSVTALAFGLCTATVIILTTNGKISDILLFDE-DLFFICLLPPIIFNAGFQVKKKQFFQNF---IIINLFGVVGTLISFG 123 (530)
Q Consensus 48 ~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~-~~~~~i~L~~ilF~aG~~l~~~~~~~~~---~~il~la~~g~~i~~~ 123 (530)
-...+++.|+.+|.......+..+. .++.. ++-..+++-..++--=.++|.++.++.. +...+.-+...++..+
T Consensus 19 wv~l~i~~Gi~lG~~~p~~~~~l~~--~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~ 96 (342)
T COG0798 19 WVFLAIAIGILLGVHFPGLAQLLGK--LEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPL 96 (342)
T ss_pred HHHHHHHHHHHHHhcccchhhhccc--ceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4667788888888533221111110 11111 2223344445555555678877665544 4444444455566555
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHh-ccc--CCchhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Q 009645 124 IISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVL-NQE--DTPLLYSLVFGEGVVNDATSIVLFNAIQKFSV 200 (530)
Q Consensus 124 ~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il-~~~--~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~ 200 (530)
.....++.+++ +.| -+..|.++-.-.|-....+. ++. |.+ .+ ...--.+||...+++|.....+..
T Consensus 97 lm~~la~~fl~-----~~p---ey~~GlILlglApC~aMVivw~~La~Gd~-~~--tlv~Va~n~l~qiv~y~~~~~~~l 165 (342)
T COG0798 97 LMFALAWFFLP-----DEP---EYRAGLILLGLAPCIAMVIVWSGLAKGDR-EL--TLVLVAFNSLLQIVLYAPLGKFFL 165 (342)
T ss_pred HHHHHHHHHhC-----CCH---HHHHHHHHHHhhhhHHHHHHHHhhccCcH-hh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555552 333 45566665555554443332 222 222 22 223456899999999987766654
Q ss_pred ccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 201 HVT--PDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIREL 239 (530)
Q Consensus 201 ~~~--~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~ 239 (530)
+.. +.++...+.+++...+. =.+.|.+.+++..+.
T Consensus 166 ~v~~~~v~~~~i~~Sv~lyl~i----Pli~G~lTR~i~~k~ 202 (342)
T COG0798 166 GVISISVPFWTIAKSVLLYLGI----PLIAGVLTRYILIKK 202 (342)
T ss_pred hhccccccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 222 22344444444433332 334445555555544
No 57
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=80.94 E-value=63 Score=32.27 Aligned_cols=70 Identities=21% Similarity=0.112 Sum_probs=39.4
Q ss_pred hhHHHhhhhhhcCChHHHHHhhHH--HHHHHHH-HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHH
Q 009645 86 LLPPIIFNAGFQVKKKQFFQNFII--INLFGVV-GTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTL 162 (530)
Q Consensus 86 ~L~~ilF~aG~~l~~~~~~~~~~~--il~la~~-g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~ 162 (530)
.+..++|..|.+++.+++++..++ ....++. -.++..++. +....++ +. ...+..|.++.+.-|.++.
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~------~l--~~~~~~glvL~~~~P~~~~ 83 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVF------KL--PPELAVGVLIVGCCPGGTA 83 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHh------CC--CHHHHHHHHheeeCCCchH
Confidence 488899999999999999887752 2222222 222222222 2222223 33 3455667666666665555
Q ss_pred HH
Q 009645 163 QV 164 (530)
Q Consensus 163 ~i 164 (530)
+.
T Consensus 84 s~ 85 (286)
T TIGR00841 84 SN 85 (286)
T ss_pred HH
Confidence 53
No 58
>PRK04972 putative transporter; Provisional
Probab=80.58 E-value=20 Score=39.60 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=70.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCcccccccCh---hHHHHHhhHHHhhhhhhcCCh---HHHHHhhHHHHHHHHHHHH
Q 009645 46 MNQSVTALAFGLCTATVIILTTNGKISDILLFDE---DLFFICLLPPIIFNAGFQVKK---KQFFQNFIIINLFGVVGTL 119 (530)
Q Consensus 46 lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~aG~~l~~---~~~~~~~~~il~la~~g~~ 119 (530)
+-...+.+++|+++|.+-...+ ....+++ ..+.+++|...+...|++--. +.++++..+.+..++..++
T Consensus 410 LG~agG~L~~gl~~g~~~~~~~-----~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~ 484 (558)
T PRK04972 410 IGNAAGLLFAGIMLGFLRANHP-----TFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSL 484 (558)
T ss_pred ccccHHHHHHHHHHHhccccCC-----CceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456789999999995322111 1122333 245567777777777766553 4556667777888888888
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhccc-ccccHHHHHHHhcccC
Q 009645 120 ISFGIISIGSAKLFMKFGLTFWDQGDFLALGAIL-SATDTVCTLQVLNQED 169 (530)
Q Consensus 120 i~~~~~~~~~~~l~~~~~~~~l~~~~alllGail-saTdpv~v~~il~~~~ 169 (530)
++.++..+..++++ ++++. .+.|++- +-|+|.+.....+..+
T Consensus 485 ~~~~~~~~~~~~~~------k~~~~--~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 485 VPVVICFLFGAYVL------RMNRA--LLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred HHHHHHHHHHHHHH------cCCHH--HHHHHHhCCCCCcHHHHHHHhhcC
Confidence 88777777777777 67766 5677765 5566666544444333
No 59
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=80.44 E-value=69 Score=32.38 Aligned_cols=144 Identities=15% Similarity=0.041 Sum_probs=81.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHH---HHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHH
Q 009645 43 TRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFF---ICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTL 119 (530)
Q Consensus 43 ~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~---~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~ 119 (530)
.+|+|. +.|++=+++|..+.-+.|+. .+.=.+.+.+|- .-.+...+|-.|-++|.|+-.+..++...+-..=+.
T Consensus 7 ~~kiPg--g~m~vPl~lga~inTf~P~~-l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~ 83 (312)
T PRK12460 7 IKKIPG--GMMVVPLLIGALINTFFPQA-LEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLG 83 (312)
T ss_pred hccCCC--ceeHHHHHHHHHHHhccCcc-hhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHH
Confidence 345775 45556666665554333322 122234444442 245666789999999998877666664444333333
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCCc-hhhhhhhhhhhhhhHHHHHHHHHH
Q 009645 120 ISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTP-LLYSLVFGEGVVNDATSIVLFNAI 195 (530)
Q Consensus 120 i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~~-~l~~ll~gEs~lND~~aivlf~~~ 195 (530)
+. .++++.+..+++. +++-=...+.+=+.++.+....-.++..|+|.+ +.... +-..+||+=-+.+....
T Consensus 84 ~~-~~~g~~~~~~~g~---~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~gA~--~~~sl~~GPf~tm~aLg 154 (312)
T PRK12460 84 VA-IVIGLLVGKFFGA---EGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDERDVGAI--SILSLNDGPFFTMLALG 154 (312)
T ss_pred HH-HHHHHHHHHHcCc---ccccchHHHHHHHHHhcCcHHHHHHHHHHcCCHhhhhHH--hhhhhccCcHHHHHHHH
Confidence 33 3334444334432 233233566777888899999999999999976 33221 23346776555554443
No 60
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=80.28 E-value=22 Score=36.57 Aligned_cols=136 Identities=12% Similarity=0.086 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhc-CChHHHHH
Q 009645 27 VALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQ-VKKKQFFQ 105 (530)
Q Consensus 27 ~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~-l~~~~~~~ 105 (530)
.++.+.+...++++++...+|.....+++=..+=......++...+. ...-.+.|..=..=++++-.|.. .|+++.-+
T Consensus 270 ~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~G-A~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~ 348 (438)
T COG3493 270 MLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEG-AKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAA 348 (438)
T ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHH-HHHHHHHHHHhhHHHHHHhhhhccccHHHHHH
Confidence 34556677789999987768976644433222211111111100000 00011244455677888999998 89998877
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-CHHHHHHHhcccc---cccHHHHHHHhcccC
Q 009645 106 NFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFW-DQGDFLALGAILS---ATDTVCTLQVLNQED 169 (530)
Q Consensus 106 ~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l-~~~~alllGails---aTdpv~v~~il~~~~ 169 (530)
....-..+-...+++.....+...-.++ ++ |...|..-|.+.+ -|-=+++++--++.+
T Consensus 349 alt~~~vii~~~vVl~~i~~~~f~grl~------~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~ 410 (438)
T COG3493 349 ALTWQNVIIALSVVLGAILGGAFVGRLM------GFYPVEAAITAGLCMANMGGTGDVAVLSAADRME 410 (438)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHhHHhcCCCCCCchHHhhhcchhc
Confidence 6655544444555555444444444444 55 4445555556654 455666666655554
No 61
>PRK04972 putative transporter; Provisional
Probab=79.75 E-value=47 Score=36.68 Aligned_cols=118 Identities=20% Similarity=0.220 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhc----cccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChH---HH
Q 009645 31 SACIVIGHLLQKT----RWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKK---QF 103 (530)
Q Consensus 31 ~~~~~~~~l~~~~----~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~---~~ 103 (530)
++++.+|+++-|. ..+-.+.+.+++|+++|-+ + ...++ ....++|...+|..|++.-.. .+
T Consensus 18 f~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~------~-----~~~~~-~~~~~gl~lF~~~vG~~~Gp~F~~~l 85 (558)
T PRK04972 18 FVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQ------H-----FSINT-DALNLGFMLFIFCVGVEAGPNFFSIF 85 (558)
T ss_pred HHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhC------C-----CCCCh-HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444455555542 2355667999999999942 1 11222 345688888889999988754 45
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHH--HHHHHhcccccccHHHHHHHhcc
Q 009645 104 FQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQG--DFLALGAILSATDTVCTLQVLNQ 167 (530)
Q Consensus 104 ~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~--~alllGailsaTdpv~v~~il~~ 167 (530)
+++..+...++++.+++..++ ++.+..++ ++++. ..++-|+.-++..-.++...+++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~G~~aGa~T~tp~l~~a~~~~~~ 144 (558)
T PRK04972 86 FRDGKNYLMLALVMVGSALVI-ALGLGKLF------GWDIGLTAGMLAGSMTSTPVLVGAGDTLRH 144 (558)
T ss_pred HHhhHHHHHHHHHHHHHHHHH-HHHHHHHh------CCCHHHHHHHhhccccCcHHHHHHHHHHhc
Confidence 555556666666665555433 33344444 55544 33444444333333333333333
No 62
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=79.52 E-value=87 Score=32.99 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHh-----hccchhHHHHHHHHHhccccc
Q 009645 254 ILMAYLSYVMADL-----FQLSGILTVFFCGIVMSHYTW 287 (530)
Q Consensus 254 l~~~~l~~~lae~-----lg~Sgilav~~~Gl~~~~~~~ 287 (530)
.......|.+.+. +.+...+.++++|++++|...
T Consensus 225 ~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~ 263 (398)
T TIGR00210 225 AVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLS 263 (398)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 3334455666664 457888999999999997653
No 63
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=78.78 E-value=24 Score=35.72 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHH----hhccchhHHHHHHHHHhcc
Q 009645 250 VALMILMAYLSYVMAD----LFQLSGILTVFFCGIVMSH 284 (530)
Q Consensus 250 ~~l~l~~~~l~~~lae----~lg~Sgilav~~~Gl~~~~ 284 (530)
..+.+.++..+|++++ ..+++..+-+.+.|+.++|
T Consensus 3 l~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n 41 (305)
T PF03601_consen 3 LLLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGN 41 (305)
T ss_pred HHHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhh
Confidence 3566777888888887 3688999999999999997
No 64
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=78.77 E-value=71 Score=33.26 Aligned_cols=161 Identities=13% Similarity=0.105 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----ccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhh
Q 009645 22 SVTLFVALVSACIVIGHLLQK-----TRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGF 96 (530)
Q Consensus 22 ~i~~~~~ll~~~~~~~~l~~~-----~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~ 96 (530)
.+..-+.++++|..+|+++.. ...+|.=+..+.+|+++-.+...... . +...-.-+.+..+.|-..+=.+=.
T Consensus 219 ~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~--~-~v~~~~v~~ig~vsL~lflamALm 295 (404)
T COG0786 219 PLIETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKK--Y-RVFRRAVDVIGNVSLSLFLAMALM 295 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcc--c-cccHHHHHHHhhhHHHHHHHHHHH
Confidence 344445555666666666653 23488888888888888766554321 1 111112246677777777777777
Q ss_pred cCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHH----Hhcccccc--cHHHHHHHhcccCC
Q 009645 97 QVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLA----LGAILSAT--DTVCTLQVLNQEDT 170 (530)
Q Consensus 97 ~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~all----lGailsaT--dpv~v~~il~~~~~ 170 (530)
+++..++-+...+.+.+-.+.++...+..-++.+-++ +-++..+.+ .|--+.|| .-+-..++=++.|.
T Consensus 296 SlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~m------G~~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~ 369 (404)
T COG0786 296 SLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLM------GKNYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGP 369 (404)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHh------CcchhHHHHhcccccCccCCcHHHHHhhhcchhhcCC
Confidence 8888888888888777766776655443333333233 334444444 22333333 33332333344565
Q ss_pred c-h--hhhhhhhhhhhhhHHHHHHH
Q 009645 171 P-L--LYSLVFGEGVVNDATSIVLF 192 (530)
Q Consensus 171 ~-~--l~~ll~gEs~lND~~aivlf 192 (530)
+ + +-.=+.| +.+-|.+.....
T Consensus 370 S~kAf~ivPiVG-Affid~ina~ii 393 (404)
T COG0786 370 SHKAFIVVPIVG-AFFIDIINALII 393 (404)
T ss_pred CceeeEEeehHH-HHHHHHHHHHHH
Confidence 4 3 2222456 778887764433
No 65
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=77.77 E-value=70 Score=30.93 Aligned_cols=34 Identities=24% Similarity=0.070 Sum_probs=24.4
Q ss_pred cCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 97 QVKKKQFFQNFIIINLFGVVGTLISFGIISIGSA 130 (530)
Q Consensus 97 ~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~ 130 (530)
--+.+.+||++++++.-.+.|.+++.+.....++
T Consensus 83 Y~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~ 116 (232)
T PRK04288 83 YKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAK 116 (232)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999988888887776554443333
No 66
>PRK05326 potassium/proton antiporter; Reviewed
Probab=77.31 E-value=13 Score=41.13 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=19.2
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhhHHHHHH
Q 009645 82 FFICLLPPIIFNAGFQVKKKQFFQNFIIINLF 113 (530)
Q Consensus 82 ~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~l 113 (530)
+..++.++.-+..|+.+|+..+.+.....+.+
T Consensus 275 l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i 306 (562)
T PRK05326 275 LAWLAQIGMFLVLGLLVTPSRLLDIALPALLL 306 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33455566666678888877776554444333
No 67
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=76.65 E-value=94 Score=31.80 Aligned_cols=137 Identities=15% Similarity=0.052 Sum_probs=65.5
Q ss_pred HhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHH
Q 009645 85 CLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQV 164 (530)
Q Consensus 85 i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~i 164 (530)
+++..++|--|.+++.++|+|..++--.. ..+.+..+.+.=+.++.+..-+ . +.+ ..+..|-++.+.-|..+.+.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~-~~~~~~qfvi~Plla~~l~~l~-~-~~~--p~l~~GliLv~~~Pgg~~S~ 121 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGL-ILSLFINWIIGPFLMFLLAWLF-L-RDL--FEYIAGLILLGLARCIAMVF 121 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHHHHHHH-c-CCC--HHHHHHHHHHHhcchHHHHH
Confidence 34557899999999999998876652111 1233333333322222221000 0 222 33666666666666555544
Q ss_pred h-ccc--CCchhhhhhhhhhhhhhHHHHHHHHHHHHHhhc-c--------CchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009645 165 L-NQE--DTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVH-V--------TPDTVMQFTGSFLYLFSLSTLLGIAVG 229 (530)
Q Consensus 165 l-~~~--~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~~-~--------~~~~~~~~~~~~l~~~~~s~~~G~~~G 229 (530)
. ... |+..+... -..+|..+++++.-.......+ . -+.+......+.+...+.-+++|.+.-
T Consensus 122 v~T~lAkGnvalsv~---lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr 195 (328)
T TIGR00832 122 VWNQLAKGDPEYTLV---LVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTR 195 (328)
T ss_pred HHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 221 22222211 2356676666665433322211 0 012344455555555555555555443
No 68
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=75.83 E-value=46 Score=29.56 Aligned_cols=109 Identities=13% Similarity=-0.006 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHH-HHhhHHHhhhhhhcCCh
Q 009645 22 SVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFF-ICLLPPIIFNAGFQVKK 100 (530)
Q Consensus 22 ~i~~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aG~~l~~ 100 (530)
.....+++++.+..+|.++.+...+|-+ .-++|+++=...+....... ++.+-..+.+. +..+-++=--.|.=...
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~lPiP--GsViGMlLL~l~L~~~~vk~-~~v~~~a~~LL~~m~LfFVPagVGim~~~ 84 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLPIPMP--ASVIGLVLLFVLLCTKVVKL-EQVESLGTALTNNIGFLFVPSGISVINSL 84 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHHhCCcCH-HHHHHHHHHHHHHHHHHHhhhHhHHHHhH
Confidence 3445556777777888888875444422 12233333222222211111 11111112222 11111111124555567
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 101 KQFFQNFIIINLFGVVGTLISFGIISIGSAKLF 133 (530)
Q Consensus 101 ~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~ 133 (530)
..+++++.+++..-+++|++...+++....++.
T Consensus 85 ~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 85 GVMSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988999888777777766654
No 69
>COG2985 Predicted permease [General function prediction only]
Probab=75.78 E-value=24 Score=37.64 Aligned_cols=136 Identities=15% Similarity=0.106 Sum_probs=78.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhh-----ccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhH---HHHHhhH
Q 009645 17 AAPVHSVTLFVALVSACIVIGHLLQK-----TRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDL---FFICLLP 88 (530)
Q Consensus 17 ~~~~~~i~~~~~ll~~~~~~~~l~~~-----~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~---~~~i~L~ 88 (530)
+...++++-+.+-+.++.++|.+=-. ..++-...+.+++|+++|.+-... + ..+.+++.. ..+ +.
T Consensus 361 ~lq~~~lLp~~ig~~LGvllGsIp~~~pg~~s~~LG~aGGpLivaLiLG~ig~iG---p--l~w~mP~~An~~lre--lG 433 (544)
T COG2985 361 KLQQVDLLPFAIGLGLGVLLGSIPFPLPGPGSFKLGNAGGPLIVALILGFIGAIG---P--LTWFMPPGALLALRE--LG 433 (544)
T ss_pred eeeeeccHHHHHHHHHHHhheeeEeccCCCceEeecccccHHHHHHHHHHhcccC---c--eEEEcChhHHHHHHH--HH
Confidence 44444455554555555555443111 011334577889999999643221 1 112333322 223 33
Q ss_pred HHhhhhhhcCCh-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhccc-ccccHHHHH
Q 009645 89 PIIFNAGFQVKK-----KQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAIL-SATDTVCTL 162 (530)
Q Consensus 89 ~ilF~aG~~l~~-----~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGail-saTdpv~v~ 162 (530)
+-+|.+|..++- +.+-....++..++.+-++++.+.++++.++++ .++|. .+.|++. +-|||.+ +
T Consensus 434 l~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~------kmn~~--~l~G~laGs~T~ppa-L 504 (544)
T COG2985 434 LALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVL------KMNWL--LLCGALAGSMTDPPA-L 504 (544)
T ss_pred HHHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH------hccHH--HHhhHHhcCCCChHH-H
Confidence 456777777763 233345566788888888888888888888876 56654 5667766 5688877 5
Q ss_pred HHhccc
Q 009645 163 QVLNQE 168 (530)
Q Consensus 163 ~il~~~ 168 (530)
+..++.
T Consensus 505 a~and~ 510 (544)
T COG2985 505 AFANDA 510 (544)
T ss_pred HHHhhc
Confidence 555554
No 70
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=75.27 E-value=1.1e+02 Score=32.12 Aligned_cols=156 Identities=15% Similarity=0.052 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhhc-----cccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHH
Q 009645 28 ALVSACIVIGHLLQKT-----RWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQ 102 (530)
Q Consensus 28 ~ll~~~~~~~~l~~~~-----~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~ 102 (530)
.++.++..+|+++.+. ..+|.-+..+++|+++-.+.......+ ..+-.-+.+..+.|-..+-.+=..+|..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~---~~~~~i~~I~~~sLdlfl~~AlmsL~L~~ 298 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPW---VAERAVSVIGNVSLSLFLAIALMSLQLWE 298 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccc---cchHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 3445555556655542 348988888999988887665432211 11111234566777777788888999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHH----HHhcccccccHHH--HHHHhcccCCc-hhhh
Q 009645 103 FFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFL----ALGAILSATDTVC--TLQVLNQEDTP-LLYS 175 (530)
Q Consensus 103 ~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~al----llGailsaTdpv~--v~~il~~~~~~-~l~~ 175 (530)
+.++..+.+.+.+.+++++.+..-+.++-.+ +-+...|. ..|--+.+|-.+. .-++-+++|.+ +-.-
T Consensus 299 l~~~a~Plliil~~q~i~~~l~~~fv~fr~m------g~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ 372 (398)
T TIGR00210 299 LADLAGPIALILLVQVMFMALYAIFVTFRLM------GKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFI 372 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhc------cchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCccee
Confidence 9999999999999999887655444444444 22333333 3555555554433 33455677754 4222
Q ss_pred hh-hhhhhhhhHHHHHHH
Q 009645 176 LV-FGEGVVNDATSIVLF 192 (530)
Q Consensus 176 ll-~gEs~lND~~aivlf 192 (530)
++ .-.+.+-|.......
T Consensus 373 ivPlvgaf~id~~n~~~i 390 (398)
T TIGR00210 373 VVPLVGAFFIDIINALVI 390 (398)
T ss_pred hhhhHHHHHHHHhhHHHH
Confidence 21 223445554444433
No 71
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=74.58 E-value=53 Score=33.71 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHh-----hccchhHHHHHHHHHhccc
Q 009645 250 VALMILMAYLSYVMADL-----FQLSGILTVFFCGIVMSHY 285 (530)
Q Consensus 250 ~~l~l~~~~l~~~lae~-----lg~Sgilav~~~Gl~~~~~ 285 (530)
..+.+.+++.++++++. .+++..+-+...|++++|.
T Consensus 7 ~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~ 47 (335)
T TIGR00698 7 LLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNT 47 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhcc
Confidence 34566677777777764 4789999999999999984
No 72
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=71.37 E-value=82 Score=32.43 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhc-CChHHHHH
Q 009645 27 VALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQ-VKKKQFFQ 105 (530)
Q Consensus 27 ~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~-l~~~~~~~ 105 (530)
..+.+....+|.+++..-.+|..+..++.|+++-.. ...+....+-...-.+++......+++.-.|+. .|++++.+
T Consensus 185 l~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~--gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~ 262 (347)
T TIGR00783 185 VLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAF--GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVA 262 (347)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHH
Confidence 334444555666666433578888888888777521 111111000000011234456777888878887 89999998
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHH-HHHHhccc---ccccHHHHHHHhcccC-Cc--hhhhhh
Q 009645 106 NF-IIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGD-FLALGAIL---SATDTVCTLQVLNQED-TP--LLYSLV 177 (530)
Q Consensus 106 ~~-~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~-alllGail---saTdpv~v~~il~~~~-~~--~l~~ll 177 (530)
.+ .+.+.+.+.++ +...+.+..+-.++ ++-+.| |+.-|-+. .-|-=+++++--++.+ .| ++.+.+
T Consensus 263 a~t~~~vviiv~~V-lg~ii~s~lvGKll------G~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~LmpfAQIstRi 335 (347)
T TIGR00783 263 ALSWQFVVICLSVV-VAMILGGAFLGKLM------GMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIPFAQISTRL 335 (347)
T ss_pred HhchhHhhhHHHHH-HHHHHHHHHHHHHh------CCChHHHHHHHhhhccCCCCCCceeeeehhhhcccccHHHHHHHh
Confidence 88 55444443333 33333343333344 554444 44444233 2344444555555554 33 344444
Q ss_pred hh
Q 009645 178 FG 179 (530)
Q Consensus 178 ~g 179 (530)
-|
T Consensus 336 GG 337 (347)
T TIGR00783 336 GG 337 (347)
T ss_pred hh
Confidence 44
No 73
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=71.29 E-value=55 Score=29.54 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCcccccccC---hhHHHHHhhHHHhhhhhhcCChH---HHHHhh-HHHHHHHHHHHH
Q 009645 47 NQSVTALAFGLCTATVIILTTNGKISDILLFD---EDLFFICLLPPIIFNAGFQVKKK---QFFQNF-IIINLFGVVGTL 119 (530)
Q Consensus 47 p~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~---~~~~~~i~L~~ilF~aG~~l~~~---~~~~~~-~~il~la~~g~~ 119 (530)
-...+.+++|+++|.+-... . ....++ ++.+.+++|..-++..|++--.+ .++++. ...+.++.+.++
T Consensus 22 G~~~G~L~vgL~~G~~~~~~---p--~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~ 96 (154)
T TIGR01625 22 GNAGGVLFVGLLLGHFGATG---P--LTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITV 96 (154)
T ss_pred cccHHHHHHHHHHHhccccC---C--cceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34678899999999532110 0 011222 23566788888888888887744 444433 123334444445
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhccc-ccccHHHHHH
Q 009645 120 ISFGIISIGSAKLFMKFGLTFWDQGDFLALGAIL-SATDTVCTLQ 163 (530)
Q Consensus 120 i~~~~~~~~~~~l~~~~~~~~l~~~~alllGail-saTdpv~v~~ 163 (530)
++.++..+..++++ ++++. ...|++- +-|+|.+.-.
T Consensus 97 ~~~~~~~~~~~~~~------~~~~~--~~~G~~aGa~T~tpaL~a 133 (154)
T TIGR01625 97 VPTLLVAVALIKLL------RINYA--LTAGMLAGATTNTPALDA 133 (154)
T ss_pred HHHHHHHHHHHHHh------CCCHH--HHHHHHhccccChHHHHH
Confidence 55555556666665 66654 5566654 3344444333
No 74
>PRK10711 hypothetical protein; Provisional
Probab=70.67 E-value=84 Score=30.40 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=23.3
Q ss_pred cCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 009645 97 QVKKKQFFQNFIIINLFGVVGTLISFGIISIGS 129 (530)
Q Consensus 97 ~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~ 129 (530)
-=+++.+||++++++.--.+|.+++.......+
T Consensus 78 Y~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~ 110 (231)
T PRK10711 78 YEQLHQIRARWKSIISICFIGSVVAMVTGTAVA 110 (231)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999998877788777654443333
No 75
>COG2855 Predicted membrane protein [Function unknown]
Probab=66.03 E-value=60 Score=33.09 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=70.4
Q ss_pred HhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCchHHHHHHHH
Q 009645 265 DLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTL 344 (530)
Q Consensus 265 e~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (530)
+..|++...=+...|+.++++.++....+. -+ ++ .--.+++.-+ ++.|+.+...+.-+. .... ..+
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~~~~~~--GI-~f--s~k~LLr~gI-vLlG~~ltl~~i~~~----G~~~----v~~ 98 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIPAQTSA--GI-TF--SSKKLLRLGI-VLLGFRLTLSDIADV----GGSG----VLI 98 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccchhhhcc--ch-hh--hHHHHHHHHH-HHHcceeeHHHHHHc----CccH----HHH
Confidence 356677888889999999966543111000 00 01 0012333333 667777754432111 1111 122
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhccccccCCCCCCcchhHHHHHHHhhhh
Q 009645 345 LGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVL 424 (530)
Q Consensus 345 ~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl 424 (530)
...++..-++..+.+... -+.++|....++-+--.=|+ |.+.|..... +.+.+|.-. ++..+++
T Consensus 99 ~~~~l~~t~~~~~~lg~~---------lgld~~~a~Lia~GssICGa-sAiaA~~pvi-----ka~~~eva~-aIa~V~l 162 (334)
T COG2855 99 IAITLSSTFLFAYFLGKL---------LGLDKKLALLIAAGSSICGA-SAIAATAPVI-----KAEEEEVAV-AIAVVVL 162 (334)
T ss_pred HHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHccchhhHH-HHHHHhCCcC-----CCCccccce-ehhhHHH
Confidence 223333333333333322 27788888877765422444 4444444322 122333333 3334444
Q ss_pred HhhhhhhhhHHHHHHHhCCCC
Q 009645 425 FSNVVFGLLTKPLVRLMLQPR 445 (530)
Q Consensus 425 ~T~~v~g~~~~~l~~~l~~~~ 445 (530)
|.++. -..-|.+.++++...
T Consensus 163 fgtia-~llyP~l~~~l~l~~ 182 (334)
T COG2855 163 FGTLA-MLLYPLLYPLLGLSP 182 (334)
T ss_pred HHHHH-HHHHHHHHHHhCCCc
Confidence 54443 244666777777654
No 76
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=65.25 E-value=94 Score=34.41 Aligned_cols=105 Identities=21% Similarity=0.139 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcccccccChh---HHHHHhhHHHhhhhhhcCCh---HHHHHhhHHHHHHHHHHHHHH
Q 009645 48 QSVTALAFGLCTATVIILTTNGKISDILLFDED---LFFICLLPPIIFNAGFQVKK---KQFFQNFIIINLFGVVGTLIS 121 (530)
Q Consensus 48 ~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~---~~~~i~L~~ilF~aG~~l~~---~~~~~~~~~il~la~~g~~i~ 121 (530)
-..+.+++|+++|.+-...+ ....+++. .+.+++|...++..|++--. +.++++..+.+.++++-++++
T Consensus 417 ~~~g~l~~gl~~g~~~~~~~-----~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~ 491 (562)
T TIGR03802 417 TGGGALISGLVFGWLRSKHP-----TFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP 491 (562)
T ss_pred hhHHHHHHHHHHHHhcccCC-----cceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34678888888885322111 11223332 45678888888888888764 355666677777777777777
Q ss_pred HHHHHHHHHHHHhhhCCCCCCHHHHHHHhccc-ccccHHHHHHHh
Q 009645 122 FGIISIGSAKLFMKFGLTFWDQGDFLALGAIL-SATDTVCTLQVL 165 (530)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~l~~~~alllGail-saTdpv~v~~il 165 (530)
.++..+..++++ ++++. .+.|++- +-|+|.+.....
T Consensus 492 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~t~~l~~a~ 528 (562)
T TIGR03802 492 LIITMLIGKYVL------KYDPA--LLLGALAGARTATPALGAVL 528 (562)
T ss_pred HHHHHHHHHHHh------CCCHH--HHHHHhhccCCCcHHHHHHH
Confidence 666666666666 66654 5666665 445555543333
No 77
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=64.45 E-value=1.9e+02 Score=30.28 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=53.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 009645 44 RWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFG 123 (530)
Q Consensus 44 ~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~ 123 (530)
+++|..+..++.|+++...-.. .+...++ --+....+.+|.-++.-=++.|.|+.+|..++.+..=+.+ .+.++
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgli-~~p~~s~----~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~g~v 96 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGLI-DSPASSP----VYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AVGTV 96 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCCc-CCCCcch----HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HHHHH
Confidence 5688888888888888753211 0001111 1145667888888888888999999999988754433333 33344
Q ss_pred HHHHHHHHHHhh
Q 009645 124 IISIGSAKLFMK 135 (530)
Q Consensus 124 ~~~~~~~~l~~~ 135 (530)
+.+.+.+.+++.
T Consensus 97 iG~~va~~l~~~ 108 (378)
T PF05684_consen 97 IGAVVAFLLFGG 108 (378)
T ss_pred HHHHHHHHHHhh
Confidence 445555666654
No 78
>PRK03818 putative transporter; Validated
Probab=64.40 E-value=76 Score=35.01 Aligned_cols=105 Identities=13% Similarity=0.038 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccccCh---hHHHHHhhHHHhhhhhhcCChH---HHHH-hhHHHHHHHHHHHHHH
Q 009645 49 SVTALAFGLCTATVIILTTNGKISDILLFDE---DLFFICLLPPIIFNAGFQVKKK---QFFQ-NFIIINLFGVVGTLIS 121 (530)
Q Consensus 49 ~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~aG~~l~~~---~~~~-~~~~il~la~~g~~i~ 121 (530)
..+.+++|+++|.+-.. + .....+.+ ..+..++|...+...|++--.. .+++ .....+.++++.++++
T Consensus 403 ~~G~L~~gl~~g~~~~~---~--~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~ 477 (552)
T PRK03818 403 AGGPLIVALILGRIGSI---G--KLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVP 477 (552)
T ss_pred chHHHHHHHHHHhccCC---C--CceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 56789999999953221 1 11112222 2455688877777778776644 3333 3455666777777776
Q ss_pred HHHHHHHHHHHHhhhCCCCCCHHHHHHHhccc-ccccHHHHHHHhcc
Q 009645 122 FGIISIGSAKLFMKFGLTFWDQGDFLALGAIL-SATDTVCTLQVLNQ 167 (530)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~l~~~~alllGail-saTdpv~v~~il~~ 167 (530)
.++...+.++++ ++++. .+.|++- +-|+|.+. +..+|
T Consensus 478 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~tp~l-~~a~~ 515 (552)
T PRK03818 478 LLIVGILARMLA------KMNYL--TLCGMLAGSMTDPPAL-AFANN 515 (552)
T ss_pred HHHHHHHHHHHH------cCCHH--HHHHHHhccCCCcHHH-HHHhc
Confidence 666666656766 67765 5667665 34555553 43343
No 79
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=63.80 E-value=82 Score=33.76 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=10.9
Q ss_pred hhhhhHHHHHHHHHHH
Q 009645 181 GVVNDATSIVLFNAIQ 196 (530)
Q Consensus 181 s~lND~~aivlf~~~~ 196 (530)
+.++|.++++.|-.+.
T Consensus 428 tt~~D~~g~~~~~~~a 443 (449)
T TIGR00400 428 TTIADALTLIIYFNIA 443 (449)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568888887776443
No 80
>PRK01658 holin-like protein; Validated
Probab=63.12 E-value=1e+02 Score=26.68 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHH-HHhhHHHhhhhhhcCChH
Q 009645 23 VTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFF-ICLLPPIIFNAGFQVKKK 101 (530)
Q Consensus 23 i~~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aG~~l~~~ 101 (530)
.+.-+.+++.+...|..+.+...+|-+ .-++|+++=...+.....+. ++.+-..+.+. +..+-++=--.|.=-..+
T Consensus 6 ~l~~l~il~~~~~~G~~i~~~l~lpiP--GsViGmlLL~~~L~~~~ik~-~~v~~~a~~Ll~~m~llFVPa~VGi~~~~~ 82 (122)
T PRK01658 6 LLVQIALLYVFALVGTWIQEQLHLPIP--GSIIGIFLLLLLLSFKILKL-KWIELGAETLLAELPLFFIPSAVGVMNYGD 82 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHhCCcCH-HHHHHHHHHHHHHHHHHHHHhhhHHHHhHH
Confidence 344456667777888888874444322 12234433222222211121 11221122222 221111112245545578
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 102 QFFQNFIIINLFGVVGTLISFGIISIGSAKLF 133 (530)
Q Consensus 102 ~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~ 133 (530)
.+++++.+++...+++|++...+++....++.
T Consensus 83 ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~ 114 (122)
T PRK01658 83 FLSSKGISLFLVVVISTFVVMIVTGYLTQLLA 114 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988888777666554
No 81
>COG2985 Predicted permease [General function prediction only]
Probab=56.10 E-value=94 Score=33.34 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=59.8
Q ss_pred cccChh-HHHHHhhHHHhhhhhhcCChH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHh
Q 009645 75 LLFDED-LFFICLLPPIIFNAGFQVKKK---QFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALG 150 (530)
Q Consensus 75 ~~~~~~-~~~~i~L~~ilF~aG~~l~~~---~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllG 150 (530)
.+++++ .-++++|...++..|+|--+. .|||..++-..++++- ++.....+...+.++ ++ +.+.....+=|
T Consensus 52 ~~i~~~~l~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k~~---~~-~~~~~~Gm~sG 126 (544)
T COG2985 52 FTINTDMLHFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHKLF---GI-DLGLIAGMFSG 126 (544)
T ss_pred cccccchhhhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhc---CC-CHHHhhhhhcc
Confidence 344443 344788888889999998754 5677777766666554 333333333444433 11 34455677788
Q ss_pred cccccccHHHHHHHhcccCCc
Q 009645 151 AILSATDTVCTLQVLNQEDTP 171 (530)
Q Consensus 151 ailsaTdpv~v~~il~~~~~~ 171 (530)
|+-+...-+++..++++.+.+
T Consensus 127 AlTsTP~L~aa~~~L~~lg~~ 147 (544)
T COG2985 127 ALTSTPGLGAAQDILRELGAP 147 (544)
T ss_pred cccCCchhHHHHHHHHhhccc
Confidence 888888888888899988866
No 82
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=54.93 E-value=72 Score=36.59 Aligned_cols=74 Identities=9% Similarity=0.070 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhh
Q 009645 252 LMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDME 325 (530)
Q Consensus 252 l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~ 325 (530)
+++.+++++.+++|-+.++..+-.+++|++++........+..-.........++.+.-.+.-+-.|+.++...
T Consensus 21 ~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~ 94 (810)
T TIGR00844 21 FSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKY 94 (810)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 45566777777777888888888888888888654332222110001112222444555555555677765543
No 83
>PRK01821 hypothetical protein; Provisional
Probab=54.74 E-value=1.5e+02 Score=26.05 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHH-HHhhHHHhhhhhhcCChH
Q 009645 23 VTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFF-ICLLPPIIFNAGFQVKKK 101 (530)
Q Consensus 23 i~~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aG~~l~~~ 101 (530)
++..+++++.+...|..+.+...+|-+ .-++|+++=...+.....+. ++.+-..+.+. +..+-++=--.|.=-..+
T Consensus 11 ~l~~l~ill~~~~~Ge~i~~~l~lpiP--GsViGmlLLf~~L~~~~vk~-~~v~~~a~~LL~~m~LfFVPa~VGim~~~~ 87 (133)
T PRK01821 11 YLRAFVLIYACLYAGIFIASLLPITIP--GSIIGMLILFVLLALQILPA-KWVKPGCSLLIRYMALLFVPIGVGVMQYYD 87 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHHhCCcCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344455666777788888875444322 22234433222222211111 11211122222 211111111244445577
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 102 QFFQNFIIINLFGVVGTLISFGIISIGSAKLF 133 (530)
Q Consensus 102 ~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~ 133 (530)
.+++++.+++..-+++|++...+++....++.
T Consensus 88 ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~ 119 (133)
T PRK01821 88 LLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH 119 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998888898888777777666553
No 84
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=53.43 E-value=1.5e+02 Score=29.91 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=33.1
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHH
Q 009645 80 DLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGI 124 (530)
Q Consensus 80 ~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~ 124 (530)
+.+.....|..++..|..++.+..++..+.+....+.=.++..++
T Consensus 210 ~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i 254 (321)
T TIGR00946 210 SILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAV 254 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHH
Confidence 567788999999999999998888777666655555554444333
No 85
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=48.97 E-value=3.2e+02 Score=28.19 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHH
Q 009645 26 FVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQ 105 (530)
Q Consensus 26 ~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~ 105 (530)
+.++...+.+ +.++-++.++|. +.++..+++|...+... +. ...+ |+....+.=..+--.-|.++|...|++
T Consensus 190 ~~~l~~~~~~-~g~l~~~lr~Pa--~~ll~~l~l~a~v~~~~-~~---~~~l-P~wl~~va~~~iG~~IG~~f~~~~l~~ 261 (352)
T COG3180 190 LLLLILAALL-GGLLGKLLRFPA--PTLLGPLLLGAIVHFGG-GI---TIQL-PAWLLAVAQALIGALIGSRFDRSILRE 261 (352)
T ss_pred HHHHHHHHHH-HHHHHHHHcCCc--HHHHHHHHHHHHhhccc-ce---eeeC-CHHHHHHHHHHHHHHHcccccHHHHHH
Confidence 3334344444 444444455775 56677777776655432 11 1222 344554555556667888898777665
Q ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHH
Q 009645 106 NFIII--NLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLA 148 (530)
Q Consensus 106 ~~~~i--l~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~all 148 (530)
..+.. .....++.++.+...+...+++. +.++.++++
T Consensus 262 ~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~------~i~~~ta~L 300 (352)
T COG3180 262 AKRLLPAILVSIIALMAIAAGMAGLLSWLT------GIDLNTAYL 300 (352)
T ss_pred hHhhcchHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHH
Confidence 55442 22223333333333343433333 778876644
No 86
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=48.55 E-value=97 Score=23.06 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.4
Q ss_pred cccchHHHHHHHHHHHHHH
Q 009645 44 RWMNQSVTALAFGLCTATV 62 (530)
Q Consensus 44 ~~lp~~~~~ll~Gil~G~~ 62 (530)
.|+|.+..++++|+++..+
T Consensus 37 GrihGSAIAI~lGLvLAy~ 55 (60)
T PF03818_consen 37 GRIHGSAIAIVLGLVLAYI 55 (60)
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 5699999999999998854
No 87
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=44.81 E-value=60 Score=37.35 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=46.7
Q ss_pred HHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHH
Q 009645 81 LFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVC 160 (530)
Q Consensus 81 ~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~ 160 (530)
....+++|.-....|++.|.+.+.+....+..... ..+. .++.+++.-+++ ++|+.+++.+|.+++.---+.
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~~~~~~~~i~~-~~~~-K~l~t~~~sl~~------k~p~~~~l~l~~lm~~kgl~e 381 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINKWGALIRTILI-FGAV-KLLSTLGTSLYC------KLPLRDSLALGLLMSTKGLVE 381 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHh------cCchhHHHHHHHHHHhhhHHH
Confidence 34568899889999999999998883222222222 2122 222222322334 899999999999988766655
Q ss_pred H
Q 009645 161 T 161 (530)
Q Consensus 161 v 161 (530)
.
T Consensus 382 l 382 (769)
T KOG1650|consen 382 L 382 (769)
T ss_pred H
Confidence 3
No 88
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=44.05 E-value=1.8e+02 Score=29.41 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=31.3
Q ss_pred HhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHH
Q 009645 85 CLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLIS 121 (530)
Q Consensus 85 i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~ 121 (530)
+.+|+.-|.-|-.+|.+...+...+-.++++..++++
T Consensus 201 ~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vt 237 (314)
T PF03812_consen 201 ILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVT 237 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHH
Confidence 6788889999999999999999988888887665554
No 89
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=43.71 E-value=3e+02 Score=26.32 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=24.2
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 99 KKKQFFQNFIIINLFGVVGTLISFGIISIGSAK 131 (530)
Q Consensus 99 ~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~ 131 (530)
+++.+|||+++++.--+.|.+++.+.....++.
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~ 101 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARL 101 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999888888887765554444443
No 90
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=42.83 E-value=1.1e+02 Score=30.70 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=31.0
Q ss_pred HHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHH
Q 009645 84 ICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLIS 121 (530)
Q Consensus 84 ~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~ 121 (530)
.+.+|+.-|.-|-.+|.+...+-..+-.++++..++++
T Consensus 200 ~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vt 237 (314)
T TIGR00793 200 QTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILT 237 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHH
Confidence 36788888999999999999998888888876665554
No 91
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=41.93 E-value=3.4e+02 Score=26.49 Aligned_cols=61 Identities=10% Similarity=0.216 Sum_probs=40.8
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhh
Q 009645 259 LSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDME 325 (530)
Q Consensus 259 l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~ 325 (530)
..-.+++.++.+.+++-..+|+.++.....-.++ .+..+.++.+.-.++....|++++...
T Consensus 6 ~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~------~~~~~~l~~igl~~llF~~Gl~~d~~~ 66 (273)
T TIGR00932 6 LAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN------VEGVNHLAEFGVILLMFLIGLELDLER 66 (273)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC------hHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3445667788888999999999998653221111 124566666777777788899886544
No 92
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=41.65 E-value=4.1e+02 Score=27.33 Aligned_cols=16 Identities=13% Similarity=0.484 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHhcccc
Q 009645 271 GILTVFFCGIVMSHYT 286 (530)
Q Consensus 271 gilav~~~Gl~~~~~~ 286 (530)
.++.+.+.|...++.+
T Consensus 8 ~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4566777888887653
No 93
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=41.56 E-value=3.8e+02 Score=26.95 Aligned_cols=109 Identities=16% Similarity=-0.056 Sum_probs=59.9
Q ss_pred cchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCchHHHHHHHHHHHH
Q 009645 269 LSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLV 348 (530)
Q Consensus 269 ~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (530)
-++++-+.++|+.++-...+ -....++..+.++....++.-+.+|+.+.....+. .... ...+
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~-----lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~--------~~~~----~~~~ 243 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFK-----MPGLILKSISILSGATTPMALFSLGLALSPRKIKL--------GVRD----AILA 243 (321)
T ss_pred hCCChHHHHHHHHHHHHhhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhcc--------ChHH----HHHH
Confidence 35666677778877754331 12345667788888899999999998875432111 1111 1123
Q ss_pred HHHHHHHHHHHHHHh-hhhcCCCCCCCCccceeeeEecCCchhhHHHHhhcc
Q 009645 349 LVGRAASVFSVSFLS-NLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYN 399 (530)
Q Consensus 349 ~v~R~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~ 399 (530)
...|.+..-...+.. ..+ +-.-..++..++..+. |-+..+..+|..
T Consensus 244 ~~~klil~P~i~~~~~~~~----~l~~~~~~~~vl~aa~-P~a~~~~i~A~~ 290 (321)
T TIGR00946 244 LIVRFLVQPAVMAGISKLI----GLRGLELSVAILQAAL-PGGAVAAVLATE 290 (321)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCChHHHHHHHHHHcC-ChhhHHHHHHHH
Confidence 344543322221111 111 1122444555555555 899988888875
No 94
>COG3329 Predicted permease [General function prediction only]
Probab=41.12 E-value=78 Score=31.75 Aligned_cols=147 Identities=19% Similarity=0.209 Sum_probs=73.5
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCC--hHHHHHhhHHHHHHHH
Q 009645 38 HLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVK--KKQFFQNFIIINLFGV 115 (530)
Q Consensus 38 ~l~~~~~~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~--~~~~~~~~~~il~la~ 115 (530)
.++++- .+...+.+++.|+++|.+.. ..+....+--.+-.|+-.|.+.+.+-|++-- .+++||.......+++
T Consensus 209 ell~Es-flnpal~lllggl~iGlitG----e~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rrl~elrk~g~~~v~fgl 283 (372)
T COG3329 209 ELLQES-FLNPALVLLLGGLAIGLITG----EQGESVLKPFFDPLFQGVLCLFLLDMGMTAGRRLKELRKVGQGLVLFGL 283 (372)
T ss_pred HHHHHH-HcCchHHHHHHHHHHhheec----cCchhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcceehHHH
Confidence 344442 36677888889999995431 1111111111122556677777888887753 4466666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCCch-hhhhhhhhh-----hhhhHHHH
Q 009645 116 VGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPL-LYSLVFGEG-----VVNDATSI 189 (530)
Q Consensus 116 ~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~~~-l~~ll~gEs-----~lND~~ai 189 (530)
+.-++-.++ ++..-... ++. .+++.....+++.+.++.+=.++-+.++ ...|+ -.++-.|.| =+|=.++|
T Consensus 284 laPil~g~i-g~~lg~~a-~y~-tgfs~g~~vllAVlaaSaSyIa~PaalR-~~iPeAnPs~yl~~Slgvtfpfni~igI 359 (372)
T COG3329 284 LAPILHGFI-GLLLGMIA-GYP-TGFSDGGVVLLAVLAASASYIAVPAALR-LAIPEANPSLYLGASLGVTFPFNITIGI 359 (372)
T ss_pred HHHHHHHHH-HHHHHHHh-ccc-ccCCCcchHHHHHHhcchhhccccHHHh-ccCCCCCCcceeehhhccccceeeeech
Confidence 443333222 22211111 111 1444444667776665555555555554 33331 122222333 36777888
Q ss_pred HHHH
Q 009645 190 VLFN 193 (530)
Q Consensus 190 vlf~ 193 (530)
.+|.
T Consensus 360 PLyi 363 (372)
T COG3329 360 PLYI 363 (372)
T ss_pred HHHH
Confidence 8874
No 95
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=41.09 E-value=1.4e+02 Score=31.11 Aligned_cols=107 Identities=11% Similarity=-0.008 Sum_probs=61.8
Q ss_pred HhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHH
Q 009645 85 CLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQV 164 (530)
Q Consensus 85 i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~i 164 (530)
.++-..++.-|.+.|.+.+++-.+.-..++ +|.+- ...+.-...+...+ ...+|...+ ..+.+.+...|.-....
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~-lG~v~-q~~i~pl~~f~~~~--~~~lP~~~~-ag~~Lvtc~~p~g~~~~ 191 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLA-LGFVP-QYLIMPLLGFLLSK--VLLLPAALA-AGLLLVTCVSPGGGGNY 191 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCccee-ehHHH-HHHHHHHHHHhhhh--HhhCCcccc-ceeEEEEeccCCcchhh
Confidence 556677899999999999988877643333 22222 22222222222111 002333333 67788888899887777
Q ss_pred hcccCCchhhhhhhhhhhhhhHHHHHHHHHHH
Q 009645 165 LNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQ 196 (530)
Q Consensus 165 l~~~~~~~l~~ll~gEs~lND~~aivlf~~~~ 196 (530)
+.....+.-..+...+...+-+.++++.=...
T Consensus 192 ~~~~~~~g~v~lsilmT~~stv~avi~~pl~s 223 (371)
T KOG2718|consen 192 LTSKRLPGDVTLSILMTTISTVLAVILTPLLS 223 (371)
T ss_pred heeecCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 76555454455556666667766666554433
No 96
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=40.66 E-value=4.5e+02 Score=27.47 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=44.7
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 009645 82 FFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLAL 149 (530)
Q Consensus 82 ~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alll 149 (530)
|.++.++-++--+=+.+|.+.+-|.........+.|++.. .+.+...-.++ |.++.+.+++
T Consensus 112 FL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A-~~~g~lVG~~~------G~~~~d~~m~ 172 (438)
T COG3493 112 FLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGA-AAVGILVGLLF------GLSFQDTMMY 172 (438)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHh------CCChHHeeee
Confidence 6778888888888899999998888877666666665544 34455555556 8888877664
No 97
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=39.09 E-value=16 Score=37.95 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=9.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCcccccccChhHHH-HHhhHHHhhhhhhcCChHHHH---HhhHHHHHHHHHHHHH
Q 009645 45 WMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFF-ICLLPPIIFNAGFQVKKKQFF---QNFIIINLFGVVGTLI 120 (530)
Q Consensus 45 ~lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aG~~l~~~~~~---~~~~~il~la~~g~~i 120 (530)
+.+..++..++|+++.. .+.. ++ ....-+.+. .++.|......|.++|.+.+. +.....+.+.+...+.
T Consensus 233 g~s~~l~af~~Gl~~~~-----~~~~-~~-~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (380)
T PF00999_consen 233 GLSGILGAFIAGLILSN-----SPFA-ER-LEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLG 305 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeeeeehcccc-----cccc-ch-hhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHh
Confidence 46777777888887771 1111 11 111112244 667777778899999988883 4444333333333222
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHH
Q 009645 121 SFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVC 160 (530)
Q Consensus 121 ~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~ 160 (530)
-...+....+ .. +.++.+++..|....+-..+.
T Consensus 306 k~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~g~~~ 338 (380)
T PF00999_consen 306 KFIGVYLASR-LF------GIPWKEALFIGLGMLPRGEVS 338 (380)
T ss_dssp ------------------------HHHHTTTTSS--HHHH
T ss_pred hhceeehhhh-hc------ccccchhHHHHHhhcCccHHH
Confidence 2222221111 11 788899999887776444433
No 98
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.05 E-value=96 Score=28.26 Aligned_cols=67 Identities=19% Similarity=0.083 Sum_probs=37.9
Q ss_pred cCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhc
Q 009645 97 QVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLN 166 (530)
Q Consensus 97 ~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~ 166 (530)
++|+..-||+...+....+.+..+..++.+.....+|+.-+-.++-|- ++|.++++.-.++.+.-+|
T Consensus 5 ~idk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~N---llGVil~~~~~~~~l~~~k 71 (165)
T PF11286_consen 5 EIDKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWN---LLGVILGLLLTSALLRQLK 71 (165)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeee---HHHHHHHHHHHHHHHHHHc
Confidence 578888888887765555455444445555555555643221122232 5666666665666666554
No 99
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=34.64 E-value=2e+02 Score=30.14 Aligned_cols=46 Identities=24% Similarity=0.197 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccchhhh
Q 009645 272 ILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDME 325 (530)
Q Consensus 272 ilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~ 325 (530)
++.+...|+..+.....+ .. .--+.++..+--++|..+|+..+..+
T Consensus 243 il~~tt~~l~~~~~~~~~-------~l-~g~~~lg~~lly~ffa~IGa~a~i~~ 288 (378)
T PF05684_consen 243 ILTVTTLGLATSFPPFRK-------LL-RGASELGTFLLYLFFAVIGASADISE 288 (378)
T ss_pred HHHHHHHHHHHhccchhh-------cC-CchHHHHHHHHHHHHHHHccccCHHH
Confidence 445566666665332211 11 22355666777889999999875443
No 100
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=34.56 E-value=3.3e+02 Score=29.08 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 009645 25 LFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVII 64 (530)
Q Consensus 25 ~~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~ 64 (530)
+|+++-.++..+-.++++. ++|. +=++++|+.+-.+-.
T Consensus 303 LFI~LTF~~fflfE~~~~~-~iHp-iQY~LVGlAl~lFYl 340 (430)
T PF06123_consen 303 LFIGLTFLAFFLFELLSKL-RIHP-IQYLLVGLALVLFYL 340 (430)
T ss_pred HHHHHHHHHHHHHHHHhcC-cccH-HHHHHHHHHHHHHHH
Confidence 3444444555555666553 3664 678999998876443
No 101
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.74 E-value=1.7e+02 Score=25.64 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=40.4
Q ss_pred hhhhhHHHHHHHHHHHHHhh-ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 181 GVVNDATSIVLFNAIQKFSV-HVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIREL 239 (530)
Q Consensus 181 s~lND~~aivlf~~~~~~~~-~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~ 239 (530)
-.+-|.+|.+.|+.=..... -..+.+..+.+.......+.+.++|...|+...++-|..
T Consensus 81 ~~l~D~lAyvsFQsPVYaaIL~~vGA~~~qivtav~snavvs~~mG~~YG~FLd~cRrlF 140 (143)
T PF06610_consen 81 KNLADLLAYVSFQSPVYAAILWFVGADGDQIVTAVSSNAVVSMVMGRPYGYFLDYCRRLF 140 (143)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45679999998874221111 112345566777788888899999999998888875543
No 102
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.63 E-value=2.6e+02 Score=23.57 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009645 212 GSFLYLFSLSTLLGIAVGLMSAY 234 (530)
Q Consensus 212 ~~~l~~~~~s~~~G~~~G~~~~~ 234 (530)
..+...++.|+++|+.+||+.-+
T Consensus 46 ~klssefIsGilVGa~iG~llD~ 68 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDK 68 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766543
No 103
>PRK09903 putative transporter YfdV; Provisional
Probab=29.45 E-value=5.5e+02 Score=25.78 Aligned_cols=138 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccChhHHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 53 LAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKL 132 (530)
Q Consensus 53 ll~Gil~G~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l 132 (530)
.+.+.++|.++....-..+.. ..-.-+.+.....|.-+|..|..+..+.++++ +......+.=.++..++.....+.+
T Consensus 175 ~iia~~~gl~~~l~~i~lP~~-i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~~P~i~~~~~~~~ 252 (314)
T PRK09903 175 VVWAPVLATILVLVGVKIPAA-WDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLILMPLALLLVGMAC 252 (314)
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred HhhhCCCCCCHHHHHHHhcccccccHHHHHHHhccc--CCchhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Q 009645 133 FMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQE--DTPLLYSLVFGEGVVNDATSIVLFNAIQKFSV 200 (530)
Q Consensus 133 ~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~--~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~ 200 (530)
+++ .......-+.++.=++++..++.+. +.++.......-|.+=-.+.+.+...+..+..
T Consensus 253 -------~l~-~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~~~~~ 314 (314)
T PRK09903 253 -------HLN-SEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS 314 (314)
T ss_pred -------CCC-cHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 104
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=29.42 E-value=5e+02 Score=24.67 Aligned_cols=67 Identities=21% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHHHHhcccCCchhhhhhhhhhhhhhHHHHHHHHH
Q 009645 126 SIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNA 194 (530)
Q Consensus 126 ~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~ 194 (530)
++..|.....+|- .......-++|-+.|+|...+.++-..+. .|+......+..++...+.++=..+
T Consensus 7 sf~gYia~r~~G~-r~Gl~ltg~~GGlvSSTA~t~~la~~~r~-~p~~~~~~~~~i~lA~~~m~~R~l~ 73 (211)
T PF13194_consen 7 SFAGYIAVRLLGP-RRGLLLTGLLGGLVSSTATTVSLARRSRE-NPELSRLLAAGILLASAVMFVRVLL 73 (211)
T ss_pred hHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333332 44566677899999999877766544322 3445555555566666554443333
No 105
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=28.60 E-value=7.6e+02 Score=26.50 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccc
Q 009645 250 VALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDA 321 (530)
Q Consensus 250 ~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~~ 321 (530)
..+.+.+.+..+.+|-.+.-++.+. ++-.+ -+-||+.++|-....+-+..|..+
T Consensus 21 fvFAilLT~iv~~~a~~~t~~~p~~-----~v~~W-------------g~GfW~LL~F~MQM~LilvtG~~l 74 (453)
T PF02667_consen 21 FVFAILLTFIVFVLALLLTGQSPLE-----MVEAW-------------GDGFWSLLAFAMQMALILVTGYAL 74 (453)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHH-----HHHHH-------------hccHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566665555444444443 11111 134677777766666666666655
No 106
>PRK11715 inner membrane protein; Provisional
Probab=27.65 E-value=4.6e+02 Score=28.03 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Q 009645 26 FVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIIL 65 (530)
Q Consensus 26 ~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~~ 65 (530)
|+++-.++..+-..+++ .++|. +=++++|+.+..+-+.
T Consensus 310 FI~LTF~~fFlfE~~~~-~~iHp-iQYlLVGlAl~lFYLL 347 (436)
T PRK11715 310 FIALTFAAFFLFELLKK-LRIHP-VQYLLVGLALVLFYLL 347 (436)
T ss_pred HHHHHHHHHHHHHHhcC-ceecH-HHHHHHHHHHHHHHHH
Confidence 33344444445555554 33654 7789999988865443
No 107
>COG3329 Predicted permease [General function prediction only]
Probab=25.55 E-value=7.2e+02 Score=25.21 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=50.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCcccccccC---hhHHHHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHH
Q 009645 46 MNQSVTALAFGLCTATVIILTTNGKISDILLFD---EDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISF 122 (530)
Q Consensus 46 lp~~~~~ll~Gil~G~~~~~~~~~~~~~~~~~~---~~~~~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~ 122 (530)
+...+...+.|+++..+- ++ +.+. .+.+..++|.-|=|.+|.|++...+-. .+.....++.+.+
T Consensus 16 ~sP~llFf~~Gmlia~~k---sd------l~iP~~i~~~lslyLL~aIG~kGGveir~snl~a----~v~~~~~~~aL~~ 82 (372)
T COG3329 16 LSPTLLFFILGMLIAAFK---SD------LEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTA----MVLPVALGVALGF 82 (372)
T ss_pred ccchHHHHHHHHHHHHHh---cc------ccCchHHHHHHHHHHHHHHhcccceeeecCCcch----hHHHHHHHHHHHH
Confidence 344566666677665310 11 1222 234556667777788887777655543 4444445555543
Q ss_pred HHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccH
Q 009645 123 GIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDT 158 (530)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdp 158 (530)
++ ...+++++.++. +.+..++...|+...+++-
T Consensus 83 li-~~ia~f~l~kl~--~vdtvdaaA~ag~yGsvS~ 115 (372)
T COG3329 83 LI-VFIAYFLLRKLP--KVDTVDAAATAGTYGSVSA 115 (372)
T ss_pred HH-HHHHHHHHHHcc--ccchHHHHHHHhhccchhH
Confidence 33 345555554432 4555555555555444443
No 108
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=25.28 E-value=5.6e+02 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.084 Sum_probs=19.8
Q ss_pred hhhhhhhhhhhhhHHHHHHH-HHHHHHh
Q 009645 173 LYSLVFGEGVVNDATSIVLF-NAIQKFS 199 (530)
Q Consensus 173 l~~ll~gEs~lND~~aivlf-~~~~~~~ 199 (530)
+..++.--+.+-|+.+...+ .++.+..
T Consensus 3 l~~lLtf~aG~iDa~~fl~~~~~F~s~~ 30 (209)
T PF06912_consen 3 LALLLTFIAGFIDAYSFLALGGVFVSFM 30 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHh
Confidence 44556677889999999988 5666553
No 109
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.15 E-value=2e+02 Score=23.98 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHH
Q 009645 28 ALVSACIVIGHLLQKTRW--MNQSVTALAFGLCTAT 61 (530)
Q Consensus 28 ~ll~~~~~~~~l~~~~~~--lp~~~~~ll~Gil~G~ 61 (530)
+-++++..+|.++.++.. ..-.+..+++|+++|.
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 345677788999987432 1234556666777664
No 110
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.10 E-value=6.7e+02 Score=24.70 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=33.6
Q ss_pred HHhcccCCch--hhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009645 163 QVLNQEDTPL--LYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVG 229 (530)
Q Consensus 163 ~il~~~~~~~--l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G 229 (530)
+.+++.+.|+ +..........|.....+..-.+........+..+.......+..++.++.+|.+++
T Consensus 98 ~li~k~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~s~~~l~~~~~l~~l~l~~~g~~l~~a 166 (263)
T COG1682 98 ALIKKINFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVGLGLILA 166 (263)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556553 455556777888877776655544443322233333333333334444444444433
No 111
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=22.71 E-value=7.2e+02 Score=27.28 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009645 338 VAVSSTLLGLVLVGRAASVFSVSFLS 363 (530)
Q Consensus 338 ~~~~~~~~~~~~v~R~~~v~~~~~~~ 363 (530)
.++-...-++++++|++.+.+.-.+.
T Consensus 483 ~f~N~~~g~~MllGRf~~ii~~LaiA 508 (563)
T TIGR00680 483 LWWNLSASFSMIAGRFVPIIPVIAIA 508 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556678999998877655554
No 112
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.20 E-value=3.3e+02 Score=22.33 Aligned_cols=33 Identities=12% Similarity=0.326 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhc-----cccchHHHHHHHHHHHHHHHHHh
Q 009645 32 ACIVIGHLLQKT-----RWMNQSVTALAFGLCTATVIILT 66 (530)
Q Consensus 32 ~~~~~~~l~~~~-----~~lp~~~~~ll~Gil~G~~~~~~ 66 (530)
++.++...+++. +++| ...+++|+++|.+....
T Consensus 17 i~~~lVq~IkkT~~v~~K~iP--lIs~viGilLG~~~~~~ 54 (93)
T PF06946_consen 17 ITPALVQAIKKTKVVPNKWIP--LISVVIGILLGAAAYPL 54 (93)
T ss_pred HHHHHHHHHHHhccCCcchhh--HHHHHHHHHHHHHhhhc
Confidence 333456667653 4455 45677899999765544
No 113
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=21.82 E-value=2.9e+02 Score=19.78 Aligned_cols=35 Identities=20% Similarity=0.042 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 009645 28 ALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVII 64 (530)
Q Consensus 28 ~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~~~ 64 (530)
+-+.++..+|++++++. +.....+++|+++|....
T Consensus 12 ~~i~~g~~~G~~lD~~~--~t~p~~~~~g~llG~~~g 46 (55)
T PF09527_consen 12 APILVGFFLGYWLDKWF--GTSPWFTLIGLLLGIAAG 46 (55)
T ss_pred HHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHH
Confidence 34556778899998744 334566677777776543
No 114
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.40 E-value=6.3e+02 Score=30.98 Aligned_cols=206 Identities=9% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHhhccchhHHHHHHHHHhcccccccccccc---hhHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhcCCCchHHH
Q 009645 263 MADLFQLSGILTVFFCGIVMSHYTWHNITESS---RVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVA 339 (530)
Q Consensus 263 lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~~~Fv~~G~~~~~~~~~~~~~~~~~~~~~ 339 (530)
+.|..++--++.+++..+.+-.|...+.+-.. ...+++..-.+.-.+.-++|.++|... .++
T Consensus 22 L~E~~gIlLlllAlfL~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~A---------------YLL 86 (1355)
T PRK10263 22 LLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMA---------------YTI 86 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccCCcccccCcccccccccchHHHHHHHHHHHHHhHHH---------------HHH
Q ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHhhhhcCCCCCCCCccceeeeEecCCchhhHHHHhhcccccc
Q 009645 340 VSSTLLGLVLVG----------------RAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTS 403 (530)
Q Consensus 340 ~~~~~~~~~~v~----------------R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gl~RGava~aLa~~~~~~ 403 (530)
..++++....+. |+++.+.+......+- .+..........||+ -|..-..+....+.
T Consensus 87 P~LL~~~a~~l~R~r~~~~~l~~~~l~lRliGlLLLLLas~gLa-----a~~~~d~~~~~gGGI-IG~lLs~lL~~LfG- 159 (1355)
T PRK10263 87 PVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLA-----AINADDIWYFASGGV-IGSLLSTTLQPLLH- 159 (1355)
T ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHH-----Hhcccccccccccch-HHHHHHHHHHHHHh-
Q ss_pred CCCCCCcchhHHHHHHHhhhhHhhhhhhhhHHHHHHHhCC----------CCCCCcCCCCCCCccccccccccccccccc
Q 009645 404 SGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQ----------PREESSEISSPKSSSALLPLLANGQDLASE 473 (530)
Q Consensus 404 ~~~~~~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 473 (530)
.....+...++.++.-+++.+.+..-++++++. ++.++.+.-..|+ ...++...++++
T Consensus 160 -------~vGa~LILLlllLIGLiLlTglSwlsIleriG~~v~~~~t~l~~~~r~~~~~~~~~-----~~~~~~~~~~~~ 227 (1355)
T PRK10263 160 -------SSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDED-----EYEDDEEYEDEN 227 (1355)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccc-----cccccchhcccc
Q ss_pred ccCCCCCCCCCCCCccchhccCCccccchhHhhhcc
Q 009645 474 LDSVGGGISIRRPSSLTMLITKPTSTVHYYWRKFDN 509 (530)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~d~ 509 (530)
.. ..+.+...++++.......+.=.+|++
T Consensus 228 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1355)
T PRK10263 228 HG-------KQHESRRARILRGALARRKRLAEKFIN 256 (1355)
T ss_pred cc-------cccccchhhhhccchhhhhhhhhhccc
No 115
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.20 E-value=1.9e+02 Score=24.44 Aligned_cols=35 Identities=26% Similarity=0.125 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 009645 26 FVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATV 62 (530)
Q Consensus 26 ~~~ll~~~~~~~~l~~~~~~lp~~~~~ll~Gil~G~~ 62 (530)
|+.-.+++..+|+++.++ ...+.+-+++++++|..
T Consensus 52 fIsGilVGa~iG~llD~~--agTsPwglIv~lllGf~ 86 (116)
T COG5336 52 FISGILVGAGIGWLLDKF--AGTSPWGLIVFLLLGFG 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHH
Confidence 555667778889999873 33334444444454443
No 116
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=21.05 E-value=5.6e+02 Score=22.33 Aligned_cols=35 Identities=11% Similarity=0.008 Sum_probs=28.9
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 99 KKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLF 133 (530)
Q Consensus 99 ~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~ 133 (530)
..+.+.+++.+++...+.+|++...++|....++.
T Consensus 81 y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~ 115 (128)
T COG1380 81 YFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLI 115 (128)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999998888887776654
No 117
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=20.63 E-value=7.7e+02 Score=23.77 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=23.3
Q ss_pred CChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 98 VKKKQFFQNFIIINLFGVVGTLISFGIISIGSA 130 (530)
Q Consensus 98 l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~ 130 (530)
-+.+.+|||+.+++.-...|.+++.+.....++
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~ 110 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLAL 110 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999988777777766544433333
No 118
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=20.43 E-value=1.1e+03 Score=26.08 Aligned_cols=59 Identities=20% Similarity=0.337 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhccc
Q 009645 216 YLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHY 285 (530)
Q Consensus 216 ~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~ 285 (530)
..++.++++|..+|++..++.-+++ +....++++ . ..+-..+.+-|+.-|+.+=.+...
T Consensus 375 lff~~av~mG~g~~lv~tFLfWHle---d~~~~~~Lf--G------v~~a~~~~gEI~~~ffs~klI~ki 433 (618)
T KOG3762|consen 375 LFFFVAVVMGAGVGLVFTFLFWHLE---DLGGIKTLF--G------VVSALCHAGEILFYFFSFKLIEKI 433 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh---hcCCcceee--e------ehhhhhccchHHHHHHHHHHHHHh
Confidence 3567778889999999888877773 222211111 1 122234555666666666555533
No 119
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=20.27 E-value=6.7e+02 Score=22.93 Aligned_cols=19 Identities=21% Similarity=0.104 Sum_probs=13.9
Q ss_pred cccccHHHHHHHhcccCCc
Q 009645 153 LSATDTVCTLQVLNQEDTP 171 (530)
Q Consensus 153 lsaTdpv~v~~il~~~~~~ 171 (530)
...|+|.-....+++.|.|
T Consensus 111 ~~TT~~~~l~~~l~~l~~P 129 (198)
T TIGR02454 111 ALTTPFPELLSALRRLGVP 129 (198)
T ss_pred HHcCCHHHHHHHHHHcCCC
Confidence 3467777777778888877
No 120
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=20.23 E-value=4.5e+02 Score=21.51 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=26.5
Q ss_pred hhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 009645 93 NAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISI 127 (530)
Q Consensus 93 ~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~ 127 (530)
-.|.=-..+.+++++.+++..-+++++++..+++.
T Consensus 59 ~VGi~~~~~~l~~~~~~i~~~i~vsT~l~~~~tg~ 93 (96)
T PF03788_consen 59 GVGIMEYFDLLAQEGLPILVVIVVSTLLVLAVTGW 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555667888999999988888888887666554
No 121
>PRK01844 hypothetical protein; Provisional
Probab=20.03 E-value=4.1e+02 Score=20.66 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 009645 219 SLSTLLGIAVGLMSA 233 (530)
Q Consensus 219 ~~s~~~G~~~G~~~~ 233 (530)
+.++++|++.|+..+
T Consensus 11 I~~li~G~~~Gff~a 25 (72)
T PRK01844 11 VVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666544
No 122
>PF15179 Myc_target_1: Myc target protein 1
Probab=20.01 E-value=2e+02 Score=26.66 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009645 212 GSFLYLFSLSTLLGIAVGLMSAYIIRELYF 241 (530)
Q Consensus 212 ~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~ 241 (530)
..++..|..++++|+++|.+...++.++..
T Consensus 19 ~~lIlaF~vSm~iGLviG~li~~LltwlSR 48 (197)
T PF15179_consen 19 EDLILAFCVSMAIGLVIGALIWALLTWLSR 48 (197)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667777888777777777777653
Done!