Query 009645
Match_columns 530
No_of_seqs 278 out of 1741
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.4 1.1E-12 3.6E-17 133.8 12.6 302 80-429 61-375 (388)
2 2l0e_A Sodium/hydrogen exchang 98.3 3.4E-08 1.2E-12 63.0 -1.6 31 142-172 2-32 (33)
3 2htg_A NHE-1, NHE1 isoform of 98.0 3.5E-07 1.2E-11 55.4 -1.1 22 172-193 5-26 (28)
4 2k3c_A TMIX peptide; membrane 97.8 1.6E-07 5.3E-12 60.2 -6.2 31 256-286 2-32 (33)
5 1y4e_A Sodium/hydrogen exchang 97.1 3.6E-05 1.2E-09 46.2 -1.6 25 77-101 2-26 (27)
6 2kbv_A Sodium/hydrogen exchang 97.0 9.6E-05 3.3E-09 44.9 -0.5 23 377-400 2-24 (28)
7 3zux_A Transporter, ASBTNM; tr 91.9 11 0.00036 37.3 19.7 27 82-108 44-70 (332)
8 2bec_B Sodium/hydrogen exchang 53.6 0.39 1.4E-05 32.3 -4.2 35 439-475 2-36 (43)
9 2zy9_A Mg2+ transporter MGTE; 36.2 1.2E+02 0.0039 31.3 9.1 32 165-197 435-467 (473)
10 2l35_A DAP12-NKG2C_TM; immunor 12.4 2E+02 0.0069 20.6 3.4 32 250-282 17-48 (63)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.40 E-value=1.1e-12 Score=133.75 Aligned_cols=302 Identities=13% Similarity=0.108 Sum_probs=193.3
Q ss_pred hHHHHHhhHHHhhhhhhcCChHHH----HHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhccc
Q 009645 80 DLFFICLLPPIIFNAGFQVKKKQF----FQNFI--IINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAIL 153 (530)
Q Consensus 80 ~~~~~i~L~~ilF~aG~~l~~~~~----~~~~~--~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGail 153 (530)
+..-+.++.+.+|.+|+|+|.+.+ ++..+ .....|+.|+++++.+ |+.+ +....++.--+++.
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip 129 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIP 129 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSS
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHH
Confidence 356678899999999999998866 44443 3577888898888654 3444 55556677889999
Q ss_pred ccccHHHHHHHhcccC--Cc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009645 154 SATDTVCTLQVLNQED--TP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGL 230 (530)
Q Consensus 154 saTdpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~ 230 (530)
.+||.+.++.++...+ .| .++..+.+-+++||..++++..++.+ +..+....... +. ..
T Consensus 130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt-----~~~~~~~l~~~----------~~---~~ 191 (388)
T 1zcd_A 130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT-----NDLSMASLGVA----------AV---AI 191 (388)
T ss_dssp SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC-----CCCCHHHHHHH----------HH---HH
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCccHHHHHHH----------HH---HH
Confidence 9999999999999875 55 48899999999999999999887632 11121111100 11 11
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHH-Hhh
Q 009645 231 MSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLS-FIS 309 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~ 309 (530)
...+..+|. +.+.....+ ......++.++..|++.++|.|++|+++.+..+++. ...++.+|-.+.+. +++
T Consensus 192 ~~~~~l~r~----~v~~~~~y~--~lgl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~--~~~~~le~~l~p~v~~~i 263 (388)
T 1zcd_A 192 AVLAVLNLC----GARRTGVYI--LVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGR--SPAKRLEHVLHPWVAYLI 263 (388)
T ss_dssp HHHHHHHHT----TCCCTHHHH--HHHHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSS--CHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHh----cchhHHHHH--HHHHHHHHHHHHhCccHHHHHHHHHHhccCCCccCC--CHHHHHHHHHHHHHHHHH
Confidence 111233332 112222222 223466777899999999999999999997543221 22344555555544 688
Q ss_pred hhhh-hhhhcccchhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCCccceeeeEe-cC
Q 009645 310 ETFI-FLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLAND-SPIDKIGFKQQVTIWW-AG 386 (530)
Q Consensus 310 ~~~~-Fv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~-~G 386 (530)
-|+| |...|+++.....-... . .....+.+..+++|.++++..+++..+.+. +.+++.+|+|..-++. +|
T Consensus 264 lPlFaFanaGv~l~~~~~~~l~------~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~g 336 (388)
T 1zcd_A 264 LPLFAFANAGVSLQGVTLDGLT------S-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCG 336 (388)
T ss_dssp HHHHHHHHCCCCCSSSCCCTHH------H-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTT
T ss_pred HHHHHHHhcCeeecccchhhcc------C-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhc
Confidence 9999 99999998542100000 0 011123345589999998888877644432 3466899999976655 56
Q ss_pred CchhhHHHHhhccccccCCCCCCcchhHHHHHHHhhhhHhhhh
Q 009645 387 LMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVV 429 (530)
Q Consensus 387 l~RGava~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl~T~~v 429 (530)
.||.+++..+...+.+ + ..+..+.....++...+.|+++
T Consensus 337 -igftmsL~Ia~laf~~-~--~~~~~~~ak~~il~~s~~s~i~ 375 (388)
T 1zcd_A 337 -IGFTMSIFIASLAFGS-V--DPELINWAKLGILVGSISSAVI 375 (388)
T ss_dssp -CCHHHHHHHHHHHSTT-S--SCSSHHHHHHHHHHHHHTTTST
T ss_pred -cchHHHHHHHHHhccC-C--chhhHhhHHHHHHHHHHHHHHH
Confidence 5899999988765431 1 1111233345555555566555
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.31 E-value=3.4e-08 Score=63.02 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=28.1
Q ss_pred CHHHHHHHhcccccccHHHHHHHhcccCCch
Q 009645 142 DQGDFLALGAILSATDTVCTLQVLNQEDTPL 172 (530)
Q Consensus 142 ~~~~alllGailsaTdpv~v~~il~~~~~~~ 172 (530)
+|..|+++||++|+|||+++++++|+.+.|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4667899999999999999999999998775
No 3
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=98.04 E-value=3.5e-07 Score=55.43 Aligned_cols=22 Identities=55% Similarity=0.930 Sum_probs=20.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHHH
Q 009645 172 LLYSLVFGEGVVNDATSIVLFN 193 (530)
Q Consensus 172 ~l~~ll~gEs~lND~~aivlf~ 193 (530)
+++.+++|||++||++++++|+
T Consensus 5 ~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 5 LLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp TTHHHHTTTTTTTTTTTTTTTT
T ss_pred eEEEEEEeeeeecccEEEEEEe
Confidence 7999999999999999999986
No 4
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=97.77 E-value=1.6e-07 Score=60.23 Aligned_cols=31 Identities=39% Similarity=0.772 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHhcccc
Q 009645 256 MAYLSYVMADLFQLSGILTVFFCGIVMSHYT 286 (530)
Q Consensus 256 ~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~ 286 (530)
++|++|.+||.+|+|||+|+++||++++||.
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~ 32 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK 32 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence 4688999999999999999999999999885
No 5
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=97.07 E-value=3.6e-05 Score=46.16 Aligned_cols=25 Identities=44% Similarity=0.990 Sum_probs=22.7
Q ss_pred cChhHHHHHhhHHHhhhhhhcCChH
Q 009645 77 FDEDLFFICLLPPIIFNAGFQVKKK 101 (530)
Q Consensus 77 ~~~~~~~~i~L~~ilF~aG~~l~~~ 101 (530)
+++++|+.++||||+|++||+++.|
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~~r 26 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLPLR 26 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred CccceeeeeccCccEeeccccccCC
Confidence 5778899999999999999999876
No 6
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=96.95 E-value=9.6e-05 Score=44.87 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.5
Q ss_pred cceeeeEecCCchhhHHHHhhccc
Q 009645 377 KQQVTIWWAGLMRGAVSVALAYNK 400 (530)
Q Consensus 377 ~~~~~i~~~Gl~RGava~aLa~~~ 400 (530)
++|.+|+|+|+ ||+++++|++..
T Consensus 2 ~~Q~i~~~~GL-RGAvafaL~~~l 24 (28)
T 2kbv_A 2 KDQFIIAYGGL-RGAIAFSLGYLL 24 (28)
T ss_dssp CHHHHTTTTSS-CHHHHHHHHHHH
T ss_pred CceeEEEeecc-hHHHHHHHHHhc
Confidence 57899999997 999999999864
No 7
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=91.89 E-value=11 Score=37.33 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=21.7
Q ss_pred HHHHhhHHHhhhhhhcCChHHHHHhhH
Q 009645 82 FFICLLPPIIFNAGFQVKKKQFFQNFI 108 (530)
Q Consensus 82 ~~~i~L~~ilF~aG~~l~~~~~~~~~~ 108 (530)
....++..++|..|.+++.+++++..+
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~ 70 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFK 70 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 345688899999999999999985443
No 8
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=53.64 E-value=0.39 Score=32.30 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=20.7
Q ss_pred HHhCCCCCCCcCCCCCCCccccccccccccccccccc
Q 009645 439 RLMLQPREESSEISSPKSSSALLPLLANGQDLASELD 475 (530)
Q Consensus 439 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 475 (530)
++|.+++++..+++..|+ ++.+.+++...+.||++
T Consensus 2 ~~L~Vkr~~~~~~t~~e~--ih~~~~dhlmaGiEdi~ 36 (43)
T 2bec_B 2 DLLAVKKKQETKRSINEE--IHTQFLDHLLTGIEDIC 36 (43)
T ss_dssp ------------CCHHHH--HHHHHHHHHHHHHHHHH
T ss_pred cceeeeccccccccHHHH--HhhhhhhhhhhchHhhc
Confidence 567788877777788888 99999999999999987
No 9
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=36.21 E-value=1.2e+02 Score=31.29 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=18.0
Q ss_pred hcccC-CchhhhhhhhhhhhhhHHHHHHHHHHHH
Q 009645 165 LNQED-TPLLYSLVFGEGVVNDATSIVLFNAIQK 197 (530)
Q Consensus 165 l~~~~-~~~l~~ll~gEs~lND~~aivlf~~~~~ 197 (530)
+++.| .|.+.+--+ -+.++|.+++..|..+..
T Consensus 435 ~~~~~~DPa~~s~p~-itt~~D~~g~~~~~~~a~ 467 (473)
T 2zy9_A 435 LRRLGVDPALVSNPL-VATLSDVTGLLIYLSVAR 467 (473)
T ss_dssp HHHHTCCGGGSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccccccch-HHHHHHHHHHHHHHHHHH
Confidence 45666 343322211 346789999888765443
No 10
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=12.42 E-value=2e+02 Score=20.61 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 009645 250 VALMILMAYLSYVMADLFQLSGILTVFFCGIVM 282 (530)
Q Consensus 250 ~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~ 282 (530)
...++.++...|+.|.. +..|+++....+++-
T Consensus 17 Ii~TllLal~VY~~A~~-~~a~~lgi~c~~l~~ 48 (63)
T 2l35_A 17 LVLTVLIALAVYFLGRL-GTAEVLGIISIVLVA 48 (63)
T ss_dssp HHHHHHHHHHHHHHCCS-SSCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccc-chhhhhhhhhHHHHH
Confidence 56677788888888875 677777777666653
Done!