Query 009645
Match_columns 530
No_of_seqs 278 out of 1741
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 09:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009645.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009645hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 56.4 13 0.00097 30.7 7.1 24 44-67 9-32 (173)
2 d2e74e1 f.23.24.1 (E:1-32) Pet 26.4 49 0.0036 18.1 4.1 22 212-233 4-25 (32)
3 d2nwwa1 f.49.1.1 (A:12-416) Pr 15.7 1.7E+02 0.012 26.8 7.9 76 47-122 3-86 (405)
4 d1ag7a_ g.3.6.1 (A:) Conotoxin 10.8 45 0.0033 18.5 1.1 10 517-526 3-12 (34)
5 d1sr9a1 a.5.7.1 (A:437-491) 2- 10.7 26 0.0019 22.9 0.0 15 500-514 41-55 (55)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 7.6 5.8E+02 0.042 22.8 8.6 16 268-283 317-332 (383)
7 d1wira_ g.37.1.5 (A:) Protein 5.8 53 0.0039 25.1 -0.2 15 503-519 82-96 (121)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 5.1 1.3E+02 0.0098 15.8 1.2 18 271-288 4-21 (27)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 4.8 1.4E+02 0.01 17.1 1.2 15 271-285 20-34 (37)
10 d1q90r_ f.23.12.1 (R:) ISP sub 4.6 3.6E+02 0.026 15.8 4.7 22 104-125 9-30 (39)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=56.37 E-value=13 Score=30.75 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=17.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHhc
Q 009645 44 RWMNQSVTALAFGLCTATVIILTT 67 (530)
Q Consensus 44 ~~lp~~~~~ll~Gil~G~~~~~~~ 67 (530)
+|+|-....++.|++.+.++..+.
T Consensus 9 ~RlpWL~i~l~~~~~~a~ii~~Fe 32 (173)
T d2yvxa3 9 ARVRWLVILILTGMVTSSILQGFE 32 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888888887766543
No 2
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=26.45 E-value=49 Score=18.09 Aligned_cols=22 Identities=36% Similarity=0.791 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009645 212 GSFLYLFSLSTLLGIAVGLMSA 233 (530)
Q Consensus 212 ~~~l~~~~~s~~~G~~~G~~~~ 233 (530)
+..++..+.....|+.+|.+.+
T Consensus 4 gavfyivfialffgiavgiifa 25 (32)
T d2e74e1 4 GAVFYIVFIALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHhhheee
Confidence 4455555666677777776643
No 3
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.71 E-value=1.7e+02 Score=26.82 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCc-ccccccChhHHHH---HhhHHHhhh-h---hhcCChHHHHHhhHHHHHHHHHHH
Q 009645 47 NQSVTALAFGLCTATVIILTTNGKI-SDILLFDEDLFFI---CLLPPIIFN-A---GFQVKKKQFFQNFIIINLFGVVGT 118 (530)
Q Consensus 47 p~~~~~ll~Gil~G~~~~~~~~~~~-~~~~~~~~~~~~~---i~L~~ilF~-a---G~~l~~~~~~~~~~~il~la~~g~ 118 (530)
.+.+..+++|+++|..+....+... ..+.+.-.|+|.. ...+|++|. . =-+++.++..|-..+.+.+-+..+
T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt 82 (405)
T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 82 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHH
Confidence 4566778888888876543211100 0112222344442 334444443 2 223555566777666666655555
Q ss_pred HHHH
Q 009645 119 LISF 122 (530)
Q Consensus 119 ~i~~ 122 (530)
+++.
T Consensus 83 ~iA~ 86 (405)
T d2nwwa1 83 AFAV 86 (405)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 4
>d1ag7a_ g.3.6.1 (A:) Conotoxin {Synthetic, based on Conus geographus, GS}
Probab=10.76 E-value=45 Score=18.47 Aligned_cols=10 Identities=40% Similarity=0.973 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q 009645 517 GGGGEESPPN 526 (530)
Q Consensus 517 ~~~~~~~~~~ 526 (530)
.|||.|-||+
T Consensus 3 sgrgsrcppq 12 (34)
T d1ag7a_ 3 SGRGSRCPPQ 12 (34)
T ss_dssp BCTTSCSSSC
T ss_pred cCCCCCCChh
Confidence 4788999986
No 5
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.74 E-value=26 Score=22.92 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=13.1
Q ss_pred cchhHhhhccccccc
Q 009645 500 VHYYWRKFDNAVMRP 514 (530)
Q Consensus 500 ~~~~w~~~d~~~~~p 514 (530)
....|+-|.++|+.|
T Consensus 41 ~~~I~~~F~~~Yl~p 55 (55)
T d1sr9a1 41 PKEMWDAFAEEYLAP 55 (55)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 357899999999988
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=7.64 E-value=5.8e+02 Score=22.75 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.3
Q ss_pred ccchhHHHHHHHHHhc
Q 009645 268 QLSGILTVFFCGIVMS 283 (530)
Q Consensus 268 g~Sgilav~~~Gl~~~ 283 (530)
+..|+++...+|++-+
T Consensus 317 g~~Gi~G~l~~glfa~ 332 (383)
T d1u7ga_ 317 GVCGIVGCIMTGIFAA 332 (383)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred hhhHHHHHHHHHHhcC
Confidence 4578999999999865
No 7
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.84 E-value=53 Score=25.12 Aligned_cols=15 Identities=13% Similarity=0.682 Sum_probs=11.5
Q ss_pred hHhhhcccccccccCCC
Q 009645 503 YWRKFDNAVMRPIFGGG 519 (530)
Q Consensus 503 ~w~~~d~~~~~p~~~~~ 519 (530)
.|. |++||||++-..
T Consensus 82 ~wd--dd~YL~PvledD 96 (121)
T d1wira_ 82 PWE--KDEYLKPVLEDD 96 (121)
T ss_dssp TTC--CHHHHSCSSSSC
T ss_pred cCC--CcccccccCCCC
Confidence 364 899999997654
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.13 E-value=1.3e+02 Score=15.76 Aligned_cols=18 Identities=17% Similarity=0.360 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHhcccccc
Q 009645 271 GILTVFFCGIVMSHYTWH 288 (530)
Q Consensus 271 gilav~~~Gl~~~~~~~~ 288 (530)
|++-+..+|++.+.|..+
T Consensus 4 gli~~tl~glf~aayqqy 21 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHHHh
Confidence 455566778877766544
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.81 E-value=1.4e+02 Score=17.15 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHhccc
Q 009645 271 GILTVFFCGIVMSHY 285 (530)
Q Consensus 271 gilav~~~Gl~~~~~ 285 (530)
|++-+|+.|+.+++|
T Consensus 20 GlLlifvl~vLFssY 34 (37)
T d2axtl1 20 GLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666665544
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.64 E-value=3.6e+02 Score=15.79 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=13.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 009645 104 FQNFIIINLFGVVGTLISFGII 125 (530)
Q Consensus 104 ~~~~~~il~la~~g~~i~~~~~ 125 (530)
||++...++++.++.....++.
T Consensus 9 rR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 9 KRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhhcc
Confidence 6777777777766554443333
Done!