RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 009645
(530 letters)
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 218 bits (556), Expect = 4e-64
Identities = 140/460 (30%), Positives = 223/460 (48%), Gaps = 36/460 (7%)
Query: 23 VTLFVALVSACIVIGHLLQK-TRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDL 81
L++ L S + HL K R + +SV + +GL II + D D
Sbjct: 11 FILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGG-IIKASPHI--DPPTLDSSY 67
Query: 82 FFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFW 141
FF+ LLPPI+ +AG+ + ++ FF+N I +F VVGTLI+ +I + + + G
Sbjct: 68 FFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSI 127
Query: 142 DQG--DFLALGAILSATDTVCTLQVLNQEDT-PLLYSLVFGEGVVNDATSIVLFNAIQKF 198
D G D L G+++SA D V L V + LY ++FGE ++NDA ++VL+N KF
Sbjct: 128 DIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKF 187
Query: 199 SV----HVT-PDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALM 253
VT D F+ L+G+ G + A+I R F H E +
Sbjct: 188 HKTADEPVTIVDVFEGCASFFVVTCG-GLLVGVVFGFLVAFITR---FTHHIRQIEPLFV 243
Query: 254 ILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFI 313
L++YLSY+ A+ LSGIL + FCGI M Y N++ S+ T K+ LS +SET I
Sbjct: 244 FLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLI 303
Query: 314 FLYVGMDALD-MEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPID 372
F+++G+ + +W V +TL ++ R V ++S+++N
Sbjct: 304 FIFLGVSLVTENHEW--------NWAFVVATLS-FCVIYRVLGVRTLSWITNEFR---PV 351
Query: 373 KIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGL 432
+I +K Q+ I++AGL RGAV+ ALA P + +T+T+ +V F+ + G
Sbjct: 352 EIPYKDQLVIFYAGL-RGAVAFALAL----LLDEKIFPYKFLFVTTTLVVVFFTVIFQGG 406
Query: 433 LTKPLVRLMLQPREESSE--ISSPKSSSALLPLLANGQDL 470
KPLV ++ + S+ I+ LL +D+
Sbjct: 407 TIKPLVEVLKVKKGCISKTKINEELHDREFDHLLPGIEDI 446
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 150 bits (380), Expect = 4e-40
Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 24/369 (6%)
Query: 75 LLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFM 134
L D +LF + L ++F G ++ ++ + + I + + LI+ I + + L
Sbjct: 55 LELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP 114
Query: 135 KFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPL-LYSLVFGEGVVNDATSIVLFN 193
LGAILS TD V + + P + +++ GE ++ND IVLF
Sbjct: 115 G-----IPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFK 169
Query: 194 AIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDR--EVA 251
+ ++ FL LLG+ +G + ++R L R T E
Sbjct: 170 VALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDR-RGWTSPLLETL 228
Query: 252 LMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYT-WHNITESSRVTTKHTFATLSFISE 310
L +L+A+ +Y++A+ +SGIL V G+V+ + S+R+ + L F+
Sbjct: 229 LTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLN 288
Query: 311 TFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSP 370
+F+ +G + + G + L VL+ R VF +N
Sbjct: 289 GLLFVLLGAQLPL-----SLLLALGLLGLL--VALVAVLLARPLWVF---LSLKGSNLKL 338
Query: 371 IDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVF 430
D + +++++ + WAG RG VS+ALA P +++ ++LFS +V
Sbjct: 339 RDPLPWRERLFLSWAG-PRGVVSLALA---LLIPLELPGPARELILFIVFLVILFSLLVQ 394
Query: 431 GLLTKPLVR 439
GL PL +
Sbjct: 395 GLTLPPLAK 403
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 126 bits (320), Expect = 3e-32
Identities = 88/358 (24%), Positives = 155/358 (43%), Gaps = 37/358 (10%)
Query: 80 DLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLT 139
++ LP ++F AG ++ ++ +N I L ++G LI F + G +
Sbjct: 48 EVLAELGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPFLL---GLLLALLGGLGI 104
Query: 140 FWDQGDFLALGAILSATDTVCTLQVLNQED--TPLLYSLVFGEGVVNDATSIVLFNAIQK 197
+ L GA LSAT V L +L + L +L+ GE V+NDA ++VL +
Sbjct: 105 PLLEA--LLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLA 162
Query: 198 FSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMA 257
+ + FL + LLG+ G + I R F + EV L++ +A
Sbjct: 163 LAGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITR---FTSGDRELEVLLVLALA 219
Query: 258 YLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYV 317
L+ ++A+L LSGIL F G+V+S+Y ++ ++ K + F+ V
Sbjct: 220 LLAALLAELLGLSGILGAFLAGLVLSNY-----AFANELSEK-LEPFGYGLFLPLFFVSV 273
Query: 318 GMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFK 377
G+ + + + + LL +L+G+ VF ++ L + +
Sbjct: 274 GLSL-------DLSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLL---------GLSLR 317
Query: 378 QQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTK 435
+ + + + GL RGAVS+ALA G R + T + +VL + ++ LL K
Sbjct: 318 EALIVGFGGLQRGAVSLALA-AIGLQLGLIDRE----LYTLLVAVVLLTTLLKPLLKK 370
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 104 bits (262), Expect = 6e-24
Identities = 85/378 (22%), Positives = 161/378 (42%), Gaps = 33/378 (8%)
Query: 77 FDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKF 136
D ++ LPP++F A ++ +NF I L + +++ ++
Sbjct: 46 LDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGF--------- 96
Query: 137 GLTFWDQG----DFLALGAILSATDTVCTLQVLNQEDTPL-LYSLVFGEGVVNDATSIVL 191
W G L LGA+LS TD V L P L L+ GE ++ND ++V+
Sbjct: 97 -SLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVV 155
Query: 192 FNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYII-RELYFGRHSTDREV 250
F +V V + + F++ + GIA GL Y+ R L E+
Sbjct: 156 F----AIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEI 211
Query: 251 ALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHY-TWHNITESSRVTTKHTFATLSFIS 309
AL IL + +++A+ F SG++ V G+++++Y +++ ++R+ ++ + F+
Sbjct: 212 ALTILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLV 271
Query: 310 ETFIFLYVGMD---ALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLA 366
IF+ +G+ + WK + +P + T V+ V + + +
Sbjct: 272 NGIIFILIGVQTPGTIF-SAWKEILVAPAAVILALFT-NAFVIYPVMTYVRFLWTMKPFS 329
Query: 367 N---DSPIDKIGFKQQVTIWWAGLMRGAVSVA--LAYNKFTSSGHTQRPKNAIMITSTIT 421
N + G + + + WAGL RGA+ +A L++ SG P ++
Sbjct: 330 NRFLKKKPMEFGTRWKHVVSWAGL-RGAIPLALALSFPNQLLSGMA-FPARYELVFLAAG 387
Query: 422 IVLFSNVVFGLLTKPLVR 439
++LFS +V G+ V+
Sbjct: 388 VILFSLLVQGISLPIFVK 405
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 64.8 bits (159), Expect = 5e-11
Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 39/288 (13%)
Query: 116 VGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPL--- 172
+G LI+ G+ + + L GL W +G L LGAI+ +TD +L + L
Sbjct: 96 LGVLITAGLTGLFAHWLL---GLD-WLEG--LLLGAIVGSTDAAAVFSLLRGKGLNLKER 149
Query: 173 LYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMS 232
+ S + E ND ++ L + + F FL F L L+G+ G +
Sbjct: 150 VASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLL 209
Query: 233 AYIIRELYF---GRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHN 289
++ + G + L++ A L + + SG L V+ G+V+ N
Sbjct: 210 VQLLNRIALPAEGLYP-----ILVLAGALLIFALTAALGGSGFLAVYLAGLVLG-----N 259
Query: 290 ITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVL 349
R + F L+++++ +FL +G+ I ++ ++ L L+L
Sbjct: 260 RPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIA----LPALLLA---LFLIL 312
Query: 350 VGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALA 397
V R +VF + ++++ I W GL RGAV + LA
Sbjct: 313 VARPLAVFLSLLPF---------RFNLREKLFISWVGL-RGAVPIVLA 350
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 59.3 bits (144), Expect = 3e-09
Identities = 71/313 (22%), Positives = 129/313 (41%), Gaps = 40/313 (12%)
Query: 90 IIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLAL 149
I+F+ GF + F +G LI+ G+ + +A L L W +G L +
Sbjct: 71 ILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL---NLD-WLEG--LLI 124
Query: 150 GAILSATDTVCTLQVLNQED-TPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVM 208
GAI+ +TD +L ++ + S + E ND ++ L + + +
Sbjct: 125 GAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSW 184
Query: 209 QFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAY--LSYVMADL 266
F FL F L LLG+ G + +I R + D + ++ +A L + +
Sbjct: 185 GFLLGFLQQFGLGLLLGLGGGKLLLQLIN-----RINLDSGLYPILALAGGLLIFSLTGA 239
Query: 267 FQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEK 326
SGIL V+ G+++ N +R F L+++++ +FL +G+ +
Sbjct: 240 IGGSGILAVYLAGLLLG-----NRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQL 294
Query: 327 WKIVKGSPGTSVAVSSTLLGLVLVGRAASVFS--VSFLSNLANDSPIDKIGFKQQVTIWW 384
I P ++ L ++ V R +VF + F N ++++ + W
Sbjct: 295 LPIA--IPAILLS-----LWMIFVARPLAVFLGLIPFRFNR-----------REKLFVSW 336
Query: 385 AGLMRGAVSVALA 397
GL RGAV + LA
Sbjct: 337 VGL-RGAVPIILA 348
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 397
Score = 47.2 bits (113), Expect = 1e-05
Identities = 70/375 (18%), Positives = 135/375 (36%), Gaps = 59/375 (15%)
Query: 90 IIFNAGFQVKKKQFFQNFIIINLFGVVGTLISF-GIISIGSAKLFMKFGLTFWDQGDFLA 148
++F G + ++ + G+ + +G L GL+ L
Sbjct: 69 LLFLIGLEFDLERLKKVG---RSVGLGVAQVGLTAPFLLGLLLLLGILGLSL---IAALF 122
Query: 149 LGAILSATDTVCTLQVL---NQEDTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPD 205
LGA L+ + T L++L T L+ G V +D +I+L + +
Sbjct: 123 LGAALALSSTAIVLKILMELGLLKTREG-QLILGALVFDDIAAILLLAIVPALA-----G 176
Query: 206 TVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIREL-YFGRHSTDREV------ALMILMAY 258
G L L + L+ Y++ L + E+ L++ AY
Sbjct: 177 GGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLGAAY 236
Query: 259 LSYVMADLFQLSGILTVFFCGIVMS--HYTWHNITESSRVTTKHTFATLSFISETFIFLY 316
L A+L LS IL F G+++S Y H + E F FI F+
Sbjct: 237 L----AELLGLSMILGAFLAGLLLSESEYRKHELEEKIE-----PFGDGLFIP--LFFIS 285
Query: 317 VGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGF 376
VGM + G ++ + L+ L ++G+ + + L +GF
Sbjct: 286 VGM--------SLDLGVLLENLLLILLLVALAILGKILGAYLAARL-----------LGF 326
Query: 377 KQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKP 436
+++ + L+R A + + ++T+ + + + + + LLT
Sbjct: 327 SKRLALGIGLLLRQGGEFAFV----LAGIALGSAISEALLTAVVILSMITTPILPLLTPI 382
Query: 437 LVRLMLQPREESSEI 451
L++ +L+ E+ E
Sbjct: 383 LLKRLLKKSEDEPEK 397
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2
(CPA2) family. [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 273
Score = 42.3 bits (100), Expect = 3e-04
Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 28/203 (13%)
Query: 92 FNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGA 151
F G ++ ++ ++ GV+ L+ ++ + L G + +G
Sbjct: 56 FLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLLG------LALGAAVVIGI 109
Query: 152 ILSATDTVCTLQVLNQ---EDTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVM 208
IL+ + T +QVL + TP V G + D + L + + T
Sbjct: 110 ILALSSTAVVVQVLKERGLLKTPF-GQTVLGILLFQDIAVVPLLALLPLLA------TSA 162
Query: 209 QFTGSFLYLFSLSTLLGI-AVGLMSAYIIRELYFGRHSTDRE-------VALMILMAYLS 260
L L L L + L+ +++R + + LM AY
Sbjct: 163 STEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYF- 221
Query: 261 YVMADLFQLSGILTVFFCGIVMS 283
ADL LS L F G+V+S
Sbjct: 222 ---ADLLGLSMALGAFLAGVVLS 241
>gnl|CDD|217064 pfam02487, CLN3, CLN3 protein. This is a family of proteins from
the CLN3 gene. A missense mutation of glutamic acid (E)
to lysine (K) at position 295 in the human protein has
been implicated in Juvenile neuronal ceroid
lipofuscinosis (Batten disease).
Length = 409
Score = 33.2 bits (76), Expect = 0.31
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 337 SVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWW------AGLMRG 390
S +++ +L G+V + + ++FL+ A+ + + V W AGL+ G
Sbjct: 104 SKSIAMSLAGVVFASIGSGLGEITFLALTAH--------YPRIVIAGWSSGTGGAGLI-G 154
Query: 391 AVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQPREESSE 450
A S A S PK+ +++ I LF+ F LLT P + S+
Sbjct: 155 AFSYAFLTQIAGLS-----PKHTLLVMLFIP-ALFAFSYFFLLTSPETVYTSPTLQPSTW 208
Query: 451 ISSP 454
Sbjct: 209 AVPK 212
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 31.6 bits (72), Expect = 1.2
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 7/143 (4%)
Query: 182 VVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGL-MSAYIIRELY 240
+ ND ++ N + V V ++ GS + LFSLS L + + L + +
Sbjct: 115 LTNDVEAV--SNLVSTVLVLVFTS-ILLLIGSLVLLFSLSWRLALILLLILPLLALVLSL 171
Query: 241 FGRHSTDREVALMILMAYLSYVMADLFQLSGILTVF-FCGIVMSHYTWHNITESSRVTTK 299
R S + + L+ + + LSGI + F + E R
Sbjct: 172 LARKSRKLSRRVREALGELNARLLE--SLSGIRVIKAFGAEDRELKRFEEANEELRRANL 229
Query: 300 HTFATLSFISETFIFLYVGMDAL 322
+ ++ + L L
Sbjct: 230 RASRLEALLAPLMLLLSSLGTVL 252
>gnl|CDD|221310 pfam11913, DUF3431, Protein of unknown function (DUF3431). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 291 to 390 amino acids in
length. This protein has a conserved NLRC sequence
motif.
Length = 220
Score = 29.9 bits (68), Expect = 2.9
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 248 REVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSH-YTWHN 289
RE M YL+Y++ L TVF + SH + WHN
Sbjct: 46 REA-----MVYLTYIIDHYDHLPDT-TVF----IHSHRFAWHN 78
>gnl|CDD|237575 PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional.
Length = 576
Score = 29.4 bits (67), Expect = 5.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 46 MNQSVTALAF----GLCTATVIILTTNGKISDILLFDEDLFFI 84
VT + F G TAT I LT NGK I L ++DL F+
Sbjct: 245 YGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFV 287
>gnl|CDD|184658 PRK14401, PRK14401, membrane protein; Provisional.
Length = 187
Score = 28.6 bits (64), Expect = 6.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 210 FTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRH 244
G FL L +TL +A GL A + R L + +
Sbjct: 103 TLGFFLVLAPGTTLGTVAFGLAVAGLYRALLWRQR 137
>gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding
component [Inorganic ion transport and metabolism].
Length = 408
Score = 29.0 bits (65), Expect = 6.5
Identities = 70/285 (24%), Positives = 119/285 (41%), Gaps = 59/285 (20%)
Query: 108 IIINLFGV-----VGTLISFGIISIGSA------KLFMKFGLTF---WDQGDFLALGAIL 153
+I+ +FGV + L++ I+I A + GL+ W G + G L
Sbjct: 65 VILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLAL 124
Query: 154 SATDTVCTLQVLNQEDTPLLYS----LVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQ 209
S TV L+ L E+ L+ + + G +V D ++ + + V +
Sbjct: 125 SVASTVVLLRAL--EERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALA-GVLGQGDVG 181
Query: 210 FTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGR-----------HSTDREVALMILMAY 258
F L LGI +G ++A+I L GR + RE+ + ++A
Sbjct: 182 FAT-------LLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAI 234
Query: 259 ---LSYVMADLFQLSGILTVFFCGIVM-SHYTWHNITESSRVTTKHTFATLSFISETFIF 314
+++ A+LF +S L FF G+V+ H E S + + FA L F+S
Sbjct: 235 ALGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDS-LPLRDAFAVLFFVS----- 288
Query: 315 LYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSV 359
VGM M I+ P +AV +TLL ++L G++ + F +
Sbjct: 289 --VGMLFDPM----ILIQQP---LAVLATLL-IILFGKSVAAFFI 323
>gnl|CDD|177836 PLN02180, PLN02180, gamma-glutamyl transpeptidase 4.
Length = 639
Score = 29.3 bits (65), Expect = 6.5
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 178 FGEGVVNDATSIVLFNAIQKFSV--HVTPD 205
FG GV++ +T IVL N + FS +TPD
Sbjct: 443 FGAGVLSPSTGIVLNNEMDDFSTPAEITPD 472
>gnl|CDD|233047 TIGR00604, rad3, DNA repair helicase (rad3). All proteins in this
family for which funcitons are known are DNA-DNA
helicases that funciton in the initiation of
transcription and nucleotide excision repair as part of
the TFIIH complex. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 705
Score = 28.9 bits (65), Expect = 8.9
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 185 DATSIV--LFNAIQKFSVHVTPDTVMQFTGSFLYLFSL 220
+ S+V L + +FS PD ++ F S+ YL ++
Sbjct: 502 NDPSLVRNLGELLVEFSKI-IPDGIVVFFPSYSYLENI 538
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.404
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,764,285
Number of extensions: 2677561
Number of successful extensions: 3763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3697
Number of HSP's successfully gapped: 118
Length of query: 530
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 429
Effective length of database: 6,457,848
Effective search space: 2770416792
Effective search space used: 2770416792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)