RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009645
(530 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 88/486 (18%), Positives = 144/486 (29%), Gaps = 160/486 (32%)
Query: 8 VSTLLNEPDAAPVHSVTLFVALVSACIVIGH---------LLQKTRWMNQSVTALAFGLC 58
+ LL E D V + L ++A I+ L + N + A+ FG
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FG-- 161
Query: 59 TATVIILTTNGKISDILLFDE--DLF--FICLLPPIIFNAGFQVK---------KKQFFQ 105
G+ + F+E DL+ + L+ +I + + +K F Q
Sbjct: 162 ----------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 106 NFIIIN-LFGVVGT---------LISFGIISIGSAKLFMKF----------------GLT 139
I+ L T IS +I + ++ G T
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 140 FWDQGDFLALGAILSATDT--------VCTLQVL------NQEDTP--------LLYSLV 177
QG L ++ TD+ + VL E P L SL
Sbjct: 272 GHSQG--LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 178 FGEGV------VNDATSIVLFNAIQKFSVHVTPDTVM---------QF--TGSFLYLFSL 220
EGV +++ T + + + K + H+ + +G L+ L
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 221 STLL-GIAV--GLMSAYII---RELYFGR---------HSTDREVALMILMAYLSYVMAD 265
+ L GL + I R+L F HS +L+ + D
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH-------LLVPASDLINKD 442
Query: 266 L----FQLSGI---LTVF--FCGIVMSHYTWHNITES--SRVTTKHTF--ATLSFISETF 312
L + + V+ F G + + +I+E + T F T
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLS-GSISERIVDCIIRLPVKWETTTQF-KATH 500
Query: 313 IFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPID 372
I LD G PG + + L G V L + +P D
Sbjct: 501 I--------LDF-------G-PGGASGLGV-LTHRNKDGTGVRVIVAGTL----DINPDD 539
Query: 373 KIGFKQ 378
GFKQ
Sbjct: 540 DYGFKQ 545
Score = 57.8 bits (139), Expect = 6e-09
Identities = 104/585 (17%), Positives = 170/585 (29%), Gaps = 222/585 (37%)
Query: 13 NEPDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKIS 72
+EP P V F+ VS L++ ++ + Q L L L N
Sbjct: 52 DEP-TTPAELVGKFLGYVS------SLVEPSK-VGQFDQVLNLCLTEFENCYLEGN---- 99
Query: 73 DILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLIS-------FGII 125
DI L N VK K+ +N+I + F +
Sbjct: 100 DIHAL------AAKLLQE--NDTTLVKTKELIKNYI--TARIMAKRPFDKKSNSALFRAV 149
Query: 126 SIGSAKLFMKFG-----LTFWDQ------------GDFLALGAI----LSATDTVCT--- 161
G+A+L FG ++++ GD + A L T
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 162 ---LQVL----NQEDTP----LLYSLVFGEGVVNDATSIVLFNAIQ--KFSV-----HVT 203
L +L N +TP LL + S L IQ + V T
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPI----------SCPLIGVIQLAHYVVTAKLLGFT 259
Query: 204 PDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVM 263
P + L G + GL++A I E + E + + ++
Sbjct: 260 PGELRS---------YLKGATGHSQGLVTAVAIAE------TDSWESFFVSVRKAITV-- 302
Query: 264 ADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTK-----HTFAT--LS---------- 306
+FF G V + + N + + + LS
Sbjct: 303 -----------LFFIG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 307 -FISET----------FIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAAS 355
++++T I L G L +V G P +L GL L R A
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNL------VVSGPP-------QSLYGLNLTLRKAK 397
Query: 356 -----------------VFSVSFL-------SNL---ANDSPIDKIGFKQQVTIWWAGLM 388
FS FL S+L A+D I+K K V+ +
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL-INKDLVKNNVSFNAKDI- 455
Query: 389 RGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQPR--- 445
+ V Y+ T G R + G +++ +V +++
Sbjct: 456 --QIPV---YD--TFDGSDLRVLS------------------GSISERIVDCIIRLPVKW 490
Query: 446 EESSEISS-------PKSSSALLPLLANGQD-------LASELDS 476
E +++ + P +S L L +D +A LD
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Score = 35.4 bits (81), Expect = 0.056
Identities = 44/261 (16%), Positives = 74/261 (28%), Gaps = 80/261 (30%)
Query: 319 MDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNL--------ANDSP 370
MDA + GS + V + AS F L A+D P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFF------IASQLQEQFNKILPEPTEGFAADDEP 54
Query: 371 IDK-------IGF-KQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITI 422
+G+ V G +++ L +F +
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL--TEFENC------------------ 94
Query: 423 VLFSN----VVFGLLT---------KPLVRLMLQPREESSEISSPKSSSALL-------- 461
L N + LL K L++ + R + KS+SAL
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 462 PLLA--NGQ----DLASEL----DSVGGGIS--IRRPSS-LTMLITKPTSTVHYYWRKFD 508
L+A GQ D EL + + I+ + L+ LI + + +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 509 NAVMRPIFGGGGEESPPNDIL 529
++ + +P D L
Sbjct: 215 --ILE--WLENPSNTPDKDYL 231
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 59/389 (15%), Positives = 104/389 (26%), Gaps = 109/389 (28%)
Query: 2 SLKLDSVSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTR-----------WMNQSV 50
L + D HS + + + S + LL+ ++
Sbjct: 204 KLLYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 51 TALAFGLCTATVIILTTNGKISDILL---------------FDED----LFFICL----- 86
A C +++ T +++D L D L L
Sbjct: 260 NAFNLS-CK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 87 -LPPIIFNAGFQVKKKQFFQNFIIINLF--GVVGTLISFGIISIGSAKLFMKFGLTFWDQ 143
LP +V N ++ I G+ + W
Sbjct: 317 DLPR-------EVLT---------TNPRRLSIIAESIRDGLATW-----------DNWKH 349
Query: 144 GDFLALGAILSATDTVCTLQVLNQEDTPLLY-SL-VFGEGVVNDATSIVLFNAIQKFSVH 201
+ L I+ + +L VL + ++ L VF +I+L
Sbjct: 350 VNCDKLTTIIES-----SLNVLEPAEYRKMFDRLSVFPPSA--HIPTILL----SLIWFD 398
Query: 202 VTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFG-RHSTDREVAL--MILMAY 258
V VM L S + S I +Y + + E AL I+
Sbjct: 399 VIKSDVMVVVNK---LHKYSLVEKQPK--ESTISIPSIYLELKVKLENEYALHRSIVD-- 451
Query: 259 LSYVMADLFQLSGILTVFFCGIVMSHYTWH--NITESSRVTT-KHTFATLSFISETFIFL 315
Y + F ++ + SH H NI R+T + F F+ +
Sbjct: 452 -HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 316 YVGMDA--------LDMEKWK--IVKGSP 334
+A ++ +K I P
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDP 539
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle,
NHE1, Na+/H+ transporter, metal transport; NMR
{Synthetic}
Length = 33
Score = 37.0 bits (85), Expect = 4e-04
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 257 AYLSYVMADLFQLSGILTVFFCGIVM 282
+Y++Y+ A+LF LSGI+ + G+VM
Sbjct: 3 SYMAYLSAELFHLSGIMALIASGVVM 28
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.3 bits (93), Expect = 4e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 11/35 (31%)
Query: 2 SLK-LDSVSTLLNEPDAAPVHSVTLFVAL-VSACI 34
+LK L + S L D+AP AL + A +
Sbjct: 21 ALKKLQA-SLKLYADDSAP--------ALAIKATM 46
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane,
membrane protein; HET: HSL; NMR {Homo sapiens}
Length = 27
Score = 30.2 bits (68), Expect = 0.089
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 76 LFDEDLFFICLLPPIIFNAGF 96
D+FF+ LLPPII +AG+
Sbjct: 1 FLQSDVFFLFLLPPIILDAGY 21
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane
protein, transmembrane segment, helix-KINK-helix; NMR
{Synthetic}
Length = 28
Score = 29.6 bits (66), Expect = 0.16
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 172 LLYSLVFGEGVVNDATSIVLF 192
LL+ LVFGE ++NDA ++VL+
Sbjct: 5 LLHILVFGESLLNDAVTVVLY 25
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein,
FMN, membrane, NADP, oxidoreductase, transmembrane; HET:
FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A*
3to0_A*
Length = 259
Score = 32.4 bits (74), Expect = 0.30
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 28 ALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLL 87
+S I G LL GL T T L ++ +L + LL
Sbjct: 177 NEISVSIACGLLLA---------ALQNAGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLL 227
Query: 88 P 88
P
Sbjct: 228 P 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.404
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,738,640
Number of extensions: 460878
Number of successful extensions: 1111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1102
Number of HSP's successfully gapped: 18
Length of query: 530
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 432
Effective length of database: 3,965,535
Effective search space: 1713111120
Effective search space used: 1713111120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.0 bits)