RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 009645
         (530 letters)



>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
           imidazoleglycerolphosphate synthase HisF {Thermotoga
           maritima [TaxId: 2336]}
          Length = 253

 Score = 28.2 bits (62), Expect = 2.0
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 63  IILT---TNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGV-VGT 118
           I+LT    +G  S                PII + G    K + F    +         +
Sbjct: 168 ILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGG--AGKMEHFLEAFLAGADAALAAS 225

Query: 119 LISFGIISIGSAKLFMK 135
           +  F  I +   K ++K
Sbjct: 226 VFHFREIDVRELKEYLK 242


>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 155

 Score = 26.8 bits (58), Expect = 5.1
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 410 PKNAIMITS--TITIVLFSNVV 429
           PK+AI+ T+   I I LF    
Sbjct: 1   PKSAIIYTTMGDIHISLFYKEC 22


>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
           imidazoleglycerolphosphate synthase HisF {Archaeon
           Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 252

 Score = 26.9 bits (59), Expect = 6.1
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 79  EDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGV-VGTLISFGIISIGSAKLFMK 135
           E +  +     I   A     + + F          V   +L  F ++SI   K ++K
Sbjct: 187 ELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLK 244


>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
           capensis omega virus [TaxId: 12541]}
          Length = 539

 Score = 26.9 bits (59), Expect = 7.0
 Identities = 8/63 (12%), Positives = 20/63 (31%)

Query: 443 QPREESSEISSPKSSSALLPLLANGQDLASELDSVGGGISIRRPSSLTMLITKPTSTVHY 502
                ++  ++ + S  + P       +A+ +      +     +        P ST  +
Sbjct: 206 ALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQF 265

Query: 503 YWR 505
            WR
Sbjct: 266 QWR 268


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,845,773
Number of extensions: 81425
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 14
Length of query: 530
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 440
Effective length of database: 1,171,896
Effective search space: 515634240
Effective search space used: 515634240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)