Query 009646
Match_columns 530
No_of_seqs 188 out of 2216
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 15:38:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 9.5E-44 2.1E-48 362.3 41.8 436 47-488 75-554 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 2E-41 4.4E-46 344.0 39.2 430 49-484 1-474 (474)
3 PLN02612 phytoene desaturase 100.0 9.4E-41 2E-45 345.4 42.8 434 44-489 90-550 (567)
4 TIGR02731 phytoene_desat phyto 100.0 2.8E-38 6E-43 322.9 40.3 426 49-484 1-453 (453)
5 PRK07233 hypothetical protein; 100.0 1.1E-35 2.4E-40 303.4 38.5 412 49-488 1-432 (434)
6 TIGR03467 HpnE squalene-associ 100.0 8.3E-33 1.8E-37 281.1 36.6 399 61-484 1-418 (419)
7 PRK07208 hypothetical protein; 100.0 1.6E-32 3.6E-37 282.6 35.2 425 45-501 2-472 (479)
8 COG3349 Uncharacterized conser 100.0 3.3E-33 7.1E-38 270.9 24.2 437 48-492 1-468 (485)
9 TIGR00562 proto_IX_ox protopor 100.0 5.9E-32 1.3E-36 277.6 34.3 404 47-488 2-461 (462)
10 COG1232 HemY Protoporphyrinoge 100.0 3.7E-32 8.1E-37 265.5 29.8 401 48-484 1-443 (444)
11 PRK12416 protoporphyrinogen ox 100.0 1.3E-31 2.8E-36 274.5 34.2 409 48-488 2-462 (463)
12 PRK11883 protoporphyrinogen ox 100.0 1E-31 2.2E-36 275.5 33.1 408 48-485 1-450 (451)
13 PLN02576 protoporphyrinogen ox 100.0 1E-30 2.3E-35 270.4 35.3 410 45-488 10-488 (496)
14 PLN02268 probable polyamine ox 100.0 8.6E-31 1.9E-35 266.4 28.4 394 48-487 1-434 (435)
15 PLN02529 lysine-specific histo 100.0 3.5E-28 7.5E-33 252.9 35.6 397 45-489 158-600 (738)
16 PLN02568 polyamine oxidase 100.0 3E-28 6.5E-33 249.1 33.1 423 45-488 3-536 (539)
17 TIGR02733 desat_CrtD C-3',4' d 100.0 3.3E-28 7.1E-33 251.0 32.0 418 48-485 2-490 (492)
18 PLN02676 polyamine oxidase 100.0 1.5E-28 3.2E-33 250.0 28.7 405 46-489 25-475 (487)
19 COG1231 Monoamine oxidase [Ami 100.0 3.2E-28 6.8E-33 231.5 27.4 230 244-488 206-448 (450)
20 PLN02328 lysine-specific histo 100.0 2.2E-27 4.7E-32 247.9 32.8 398 43-489 234-681 (808)
21 PLN03000 amine oxidase 100.0 1.3E-27 2.7E-32 249.1 30.9 395 46-489 183-625 (881)
22 TIGR02734 crtI_fam phytoene de 100.0 9.6E-27 2.1E-31 240.9 33.1 421 50-491 1-496 (502)
23 KOG0029 Amine oxidase [Seconda 100.0 8.7E-27 1.9E-31 233.8 26.9 216 262-489 228-461 (501)
24 PLN02976 amine oxidase 100.0 1.1E-25 2.3E-30 240.4 31.8 235 242-493 931-1192(1713)
25 TIGR02730 carot_isom carotene 99.9 2.2E-25 4.8E-30 229.5 32.0 425 48-488 1-493 (493)
26 KOG0685 Flavin-containing amin 99.9 1.4E-24 3.1E-29 206.2 25.6 221 263-488 244-492 (498)
27 PF01593 Amino_oxidase: Flavin 99.9 3.9E-26 8.5E-31 233.9 15.8 227 251-484 212-450 (450)
28 KOG1276 Protoporphyrinogen oxi 99.9 5.6E-24 1.2E-28 198.7 26.6 410 46-484 10-490 (491)
29 PRK13977 myosin-cross-reactive 99.9 8.3E-22 1.8E-26 197.3 32.6 435 28-486 4-523 (576)
30 COG1233 Phytoene dehydrogenase 99.9 3.9E-23 8.5E-28 210.8 23.8 419 46-486 2-482 (487)
31 COG3380 Predicted NAD/FAD-depe 99.9 1.5E-22 3.2E-27 177.9 14.0 216 254-487 110-331 (331)
32 COG2907 Predicted NAD/FAD-bind 99.9 7E-21 1.5E-25 173.1 21.4 266 44-333 5-297 (447)
33 KOG4254 Phytoene desaturase [C 99.9 3.1E-19 6.8E-24 167.8 27.3 240 238-489 255-548 (561)
34 PTZ00363 rab-GDP dissociation 99.8 1.1E-16 2.3E-21 159.7 23.0 246 45-304 2-288 (443)
35 PF06100 Strep_67kDa_ant: Stre 99.7 1.7E-14 3.7E-19 140.4 27.5 414 47-480 2-499 (500)
36 COG2081 Predicted flavoprotein 99.7 6.5E-16 1.4E-20 145.4 16.2 60 241-303 104-164 (408)
37 PRK00711 D-amino acid dehydrog 99.7 3.2E-14 6.8E-19 144.4 27.0 199 249-485 202-401 (416)
38 PF01266 DAO: FAD dependent ox 99.7 1.2E-14 2.6E-19 144.4 23.1 202 248-482 147-358 (358)
39 TIGR01373 soxB sarcosine oxida 99.6 1.1E-13 2.3E-18 139.9 26.0 199 249-485 184-384 (407)
40 TIGR03329 Phn_aa_oxid putative 99.6 2.3E-14 5E-19 146.4 20.5 55 249-307 184-238 (460)
41 TIGR01377 soxA_mon sarcosine o 99.6 5.1E-12 1.1E-16 126.7 30.9 204 249-486 146-360 (380)
42 PRK12409 D-amino acid dehydrog 99.6 3.4E-12 7.3E-17 129.1 28.4 200 249-485 198-405 (410)
43 PF03486 HI0933_like: HI0933-l 99.6 9.4E-14 2E-18 137.3 15.9 64 240-305 101-165 (409)
44 PRK01747 mnmC bifunctional tRN 99.5 3.9E-12 8.4E-17 135.8 28.3 55 249-307 409-464 (662)
45 PRK11259 solA N-methyltryptoph 99.5 1.6E-11 3.4E-16 123.0 30.1 199 249-486 150-360 (376)
46 PRK10015 oxidoreductase; Provi 99.5 1.4E-11 3.1E-16 124.3 28.6 52 253-306 113-164 (429)
47 KOG2820 FAD-dependent oxidored 99.5 1.3E-12 2.9E-17 119.3 18.8 63 250-313 155-218 (399)
48 PRK10157 putative oxidoreducta 99.5 8.1E-12 1.8E-16 126.2 26.5 52 253-306 113-164 (428)
49 TIGR00031 UDP-GALP_mutase UDP- 99.5 4.9E-12 1.1E-16 123.4 23.1 228 47-308 1-249 (377)
50 COG0665 DadA Glycine/D-amino a 99.5 3E-11 6.4E-16 121.5 28.2 207 249-488 157-369 (387)
51 COG0644 FixC Dehydrogenases (f 99.5 3E-11 6.5E-16 121.1 26.2 55 252-307 99-153 (396)
52 COG0578 GlpA Glycerol-3-phosph 99.5 1.3E-11 2.8E-16 123.2 22.0 57 249-308 165-227 (532)
53 PRK11101 glpA sn-glycerol-3-ph 99.4 1.4E-10 3.1E-15 120.6 29.8 58 249-308 150-213 (546)
54 TIGR02032 GG-red-SF geranylger 99.4 8.2E-11 1.8E-15 113.5 24.8 55 250-306 93-148 (295)
55 PRK11728 hydroxyglutarate oxid 99.4 1.4E-10 3E-15 116.5 26.8 56 248-306 149-204 (393)
56 PRK13369 glycerol-3-phosphate 99.4 1.2E-10 2.6E-15 120.2 25.8 42 45-86 4-45 (502)
57 PF00996 GDI: GDP dissociation 99.4 8E-11 1.7E-15 116.1 22.1 243 45-301 2-284 (438)
58 PRK08773 2-octaprenyl-3-methyl 99.4 2.4E-10 5.3E-15 114.9 26.3 54 250-306 115-169 (392)
59 PRK12266 glpD glycerol-3-phosp 99.4 1.8E-10 3.9E-15 118.8 25.8 41 46-86 5-45 (508)
60 PLN02464 glycerol-3-phosphate 99.3 2.6E-10 5.6E-15 120.0 24.9 61 248-308 232-298 (627)
61 COG4716 Myosin-crossreactive a 99.3 9.2E-11 2E-15 108.6 18.6 450 28-501 4-536 (587)
62 COG0579 Predicted dehydrogenas 99.3 2.8E-11 6E-16 118.5 15.6 58 249-308 154-213 (429)
63 TIGR03364 HpnW_proposed FAD de 99.3 2.1E-10 4.5E-15 114.3 22.3 56 249-312 146-202 (365)
64 PRK07364 2-octaprenyl-6-methox 99.3 4.2E-10 9.1E-15 114.2 23.7 63 44-107 15-78 (415)
65 PRK06847 hypothetical protein; 99.3 7.8E-10 1.7E-14 110.6 24.5 57 249-307 108-164 (375)
66 PRK06185 hypothetical protein; 99.3 1.3E-09 2.7E-14 110.4 25.0 37 45-81 4-40 (407)
67 COG0654 UbiH 2-polyprenyl-6-me 99.3 1.8E-09 3.8E-14 108.1 24.3 58 47-107 2-62 (387)
68 PRK07045 putative monooxygenas 99.3 3.6E-09 7.9E-14 106.2 26.5 61 45-107 3-63 (388)
69 COG1635 THI4 Ribulose 1,5-bisp 99.3 4.2E-11 9.1E-16 103.2 10.1 41 47-87 30-70 (262)
70 PRK05714 2-octaprenyl-3-methyl 99.2 3.5E-09 7.5E-14 107.0 25.9 59 250-311 114-174 (405)
71 PRK04176 ribulose-1,5-biphosph 99.2 6.5E-11 1.4E-15 110.3 12.2 41 45-85 23-63 (257)
72 PRK06481 fumarate reductase fl 99.2 4.7E-10 1E-14 115.8 19.4 56 248-305 190-250 (506)
73 PRK07333 2-octaprenyl-6-methox 99.2 8.8E-10 1.9E-14 111.4 20.8 55 249-306 112-167 (403)
74 PRK07190 hypothetical protein; 99.2 1.1E-08 2.3E-13 105.0 28.9 61 45-107 3-63 (487)
75 TIGR01988 Ubi-OHases Ubiquinon 99.2 2.7E-09 5.9E-14 107.2 24.2 59 49-107 1-62 (385)
76 PRK06834 hypothetical protein; 99.2 4.6E-09 1E-13 107.8 25.7 55 250-307 102-157 (488)
77 PRK08244 hypothetical protein; 99.2 4.8E-09 1E-13 108.6 26.0 59 47-107 2-60 (493)
78 PRK06184 hypothetical protein; 99.2 2.9E-09 6.3E-14 110.5 24.2 59 47-107 3-61 (502)
79 PLN02463 lycopene beta cyclase 99.2 6.4E-09 1.4E-13 104.7 25.7 36 45-80 26-61 (447)
80 PF01494 FAD_binding_3: FAD bi 99.2 3.8E-10 8.2E-15 112.0 16.5 58 249-307 112-173 (356)
81 PRK07494 2-octaprenyl-6-methox 99.2 1.1E-09 2.3E-14 110.1 19.8 39 44-82 4-42 (388)
82 PLN02697 lycopene epsilon cycl 99.2 1.3E-08 2.7E-13 104.2 27.4 54 250-306 194-248 (529)
83 PLN00093 geranylgeranyl diphos 99.2 5.8E-08 1.3E-12 98.4 31.8 38 43-80 35-72 (450)
84 PF13450 NAD_binding_8: NAD(P) 99.2 2.8E-11 6.1E-16 87.3 5.3 36 52-87 1-36 (68)
85 PRK08850 2-octaprenyl-6-methox 99.2 1E-08 2.2E-13 103.5 25.4 33 47-79 4-36 (405)
86 PRK08013 oxidoreductase; Provi 99.2 1E-08 2.2E-13 103.3 25.3 56 250-307 113-169 (400)
87 TIGR00292 thiazole biosynthesi 99.2 2.7E-10 6E-15 105.7 12.8 40 46-85 20-59 (254)
88 KOG2852 Possible oxidoreductas 99.2 3.8E-10 8.3E-15 101.0 12.8 215 250-501 149-376 (380)
89 PRK09126 hypothetical protein; 99.2 7.8E-10 1.7E-14 111.3 16.8 61 47-107 3-66 (392)
90 PRK08132 FAD-dependent oxidore 99.2 4.4E-08 9.5E-13 102.8 30.1 66 40-107 16-81 (547)
91 PTZ00383 malate:quinone oxidor 99.2 5.5E-10 1.2E-14 113.5 15.1 59 248-308 211-275 (497)
92 PRK06183 mhpA 3-(3-hydroxyphen 99.2 1.5E-08 3.2E-13 106.1 26.2 61 45-107 8-68 (538)
93 TIGR01984 UbiH 2-polyprenyl-6- 99.2 1.3E-08 2.8E-13 102.1 25.0 54 250-306 107-162 (382)
94 TIGR01790 carotene-cycl lycope 99.2 3.6E-08 7.7E-13 99.1 27.9 36 49-84 1-36 (388)
95 TIGR02023 BchP-ChlP geranylger 99.1 3.9E-08 8.5E-13 98.6 27.5 32 48-79 1-32 (388)
96 PRK08274 tricarballylate dehyd 99.1 1.6E-09 3.5E-14 111.4 17.8 57 248-306 131-192 (466)
97 PRK08020 ubiF 2-octaprenyl-3-m 99.1 1.5E-08 3.3E-13 101.9 24.5 55 250-307 114-170 (391)
98 PRK07588 hypothetical protein; 99.1 2.7E-08 5.8E-13 100.0 26.2 57 48-107 1-58 (391)
99 PRK07121 hypothetical protein; 99.1 2.3E-09 5E-14 110.7 18.9 59 247-306 176-239 (492)
100 PRK08849 2-octaprenyl-3-methyl 99.1 1.1E-08 2.4E-13 102.4 23.1 61 47-107 3-67 (384)
101 PRK05192 tRNA uridine 5-carbox 99.1 9.6E-09 2.1E-13 105.1 22.5 39 46-84 3-42 (618)
102 PRK08243 4-hydroxybenzoate 3-m 99.1 2.9E-08 6.2E-13 99.8 25.5 59 47-107 2-62 (392)
103 PRK05732 2-octaprenyl-6-methox 99.1 4.4E-08 9.5E-13 98.7 26.2 62 46-107 2-69 (395)
104 PRK07608 ubiquinone biosynthes 99.1 1.4E-08 3E-13 102.1 22.4 54 249-306 112-167 (388)
105 PRK11445 putative oxidoreducta 99.1 1.1E-07 2.4E-12 93.8 28.4 58 47-107 1-62 (351)
106 PRK06126 hypothetical protein; 99.1 2E-08 4.3E-13 105.4 23.9 62 44-107 4-65 (545)
107 PF05834 Lycopene_cycl: Lycope 99.1 1.1E-08 2.5E-13 101.5 20.9 54 249-305 88-141 (374)
108 PLN00128 Succinate dehydrogena 99.1 9.6E-10 2.1E-14 115.6 13.9 59 247-306 186-250 (635)
109 PF00890 FAD_binding_2: FAD bi 99.1 1.7E-09 3.7E-14 109.8 14.9 59 247-307 140-204 (417)
110 TIGR03378 glycerol3P_GlpB glyc 99.1 2.3E-09 5E-14 105.1 14.5 70 242-313 257-329 (419)
111 TIGR01813 flavo_cyto_c flavocy 99.1 4E-09 8.6E-14 107.7 16.9 59 248-307 130-193 (439)
112 PRK12845 3-ketosteroid-delta-1 99.1 9.9E-09 2.2E-13 106.8 19.5 58 248-307 217-279 (564)
113 PRK07236 hypothetical protein; 99.1 4.4E-08 9.4E-13 98.3 23.6 63 45-108 4-66 (386)
114 PRK06617 2-octaprenyl-6-methox 99.1 6.1E-08 1.3E-12 96.7 24.0 55 250-307 106-161 (374)
115 PRK06175 L-aspartate oxidase; 99.1 1.7E-09 3.7E-14 109.3 12.9 58 247-306 127-189 (433)
116 TIGR01320 mal_quin_oxido malat 99.0 8.4E-09 1.8E-13 105.3 17.6 60 248-308 178-242 (483)
117 TIGR02028 ChlP geranylgeranyl 99.0 1.8E-07 4E-12 93.8 27.0 35 48-82 1-35 (398)
118 PLN02985 squalene monooxygenas 99.0 6.8E-08 1.5E-12 99.5 24.4 62 44-107 40-101 (514)
119 COG0562 Glf UDP-galactopyranos 99.0 7.5E-10 1.6E-14 101.0 8.6 221 47-308 1-243 (374)
120 PRK12835 3-ketosteroid-delta-1 99.0 1.5E-08 3.2E-13 106.1 18.9 60 247-307 212-276 (584)
121 PRK06996 hypothetical protein; 99.0 1.7E-07 3.8E-12 94.3 25.8 64 43-107 7-75 (398)
122 PRK06134 putative FAD-binding 99.0 1.7E-08 3.8E-13 105.9 18.8 58 248-307 217-279 (581)
123 TIGR00275 flavoprotein, HI0933 99.0 5.7E-09 1.2E-13 104.5 14.5 56 247-305 104-159 (400)
124 PRK05257 malate:quinone oxidor 99.0 2E-08 4.2E-13 102.7 18.6 59 249-308 184-248 (494)
125 PRK07843 3-ketosteroid-delta-1 99.0 2.2E-08 4.7E-13 104.6 19.2 59 247-307 207-270 (557)
126 PRK05249 soluble pyridine nucl 99.0 6.6E-09 1.4E-13 106.7 15.2 62 247-310 215-276 (461)
127 PRK12834 putative FAD-binding 99.0 1.1E-08 2.5E-13 106.8 17.0 41 46-86 3-45 (549)
128 PF01946 Thi4: Thi4 family; PD 99.0 4.6E-10 9.9E-15 97.7 5.3 62 46-107 16-82 (230)
129 KOG2415 Electron transfer flav 99.0 2.1E-07 4.6E-12 87.9 22.9 63 249-312 184-264 (621)
130 PRK12839 hypothetical protein; 99.0 2.2E-08 4.8E-13 104.5 18.3 59 248-307 214-277 (572)
131 PRK07538 hypothetical protein; 99.0 1.3E-07 2.8E-12 95.7 23.4 35 48-82 1-35 (413)
132 PRK05329 anaerobic glycerol-3- 99.0 1.2E-08 2.5E-13 101.6 15.1 61 249-311 260-323 (422)
133 PRK05868 hypothetical protein; 99.0 2.2E-07 4.8E-12 92.4 24.0 36 47-82 1-36 (372)
134 PRK08294 phenol 2-monooxygenas 99.0 7.4E-07 1.6E-11 94.3 29.1 59 45-107 30-91 (634)
135 PRK08163 salicylate hydroxylas 99.0 5.3E-09 1.1E-13 105.4 12.5 60 46-107 3-62 (396)
136 PRK07251 pyridine nucleotide-d 99.0 1.4E-08 3E-13 103.6 15.6 58 248-308 198-255 (438)
137 PRK06370 mercuric reductase; V 99.0 1.2E-08 2.6E-13 104.8 14.9 60 248-308 212-273 (463)
138 COG1252 Ndh NADH dehydrogenase 99.0 9.7E-09 2.1E-13 100.0 13.4 99 204-308 157-264 (405)
139 PLN02927 antheraxanthin epoxid 99.0 1.3E-07 2.7E-12 98.8 22.4 61 45-106 79-142 (668)
140 PRK13339 malate:quinone oxidor 99.0 1.2E-08 2.6E-13 103.5 14.6 59 249-308 185-249 (497)
141 PRK12843 putative FAD-binding 99.0 3.6E-08 7.9E-13 103.4 18.6 59 247-307 220-283 (578)
142 PRK06753 hypothetical protein; 98.9 1.8E-07 3.9E-12 93.5 22.8 36 48-83 1-36 (373)
143 PRK12842 putative succinate de 98.9 9.3E-09 2E-13 108.0 14.1 57 248-306 214-275 (574)
144 PRK08401 L-aspartate oxidase; 98.9 3.5E-08 7.5E-13 101.0 17.9 58 247-307 119-176 (466)
145 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 2.2E-07 4.8E-12 93.1 23.4 59 47-107 2-62 (390)
146 PLN02172 flavin-containing mon 98.9 8E-09 1.7E-13 104.7 13.0 41 46-86 9-49 (461)
147 PLN02661 Putative thiazole syn 98.9 7.1E-09 1.5E-13 98.9 11.7 40 46-85 91-131 (357)
148 TIGR01989 COQ6 Ubiquinone bios 98.9 2.9E-07 6.2E-12 93.8 24.4 33 48-80 1-37 (437)
149 PF00732 GMC_oxred_N: GMC oxid 98.9 2.1E-08 4.5E-13 96.8 15.1 66 251-316 196-268 (296)
150 PF13738 Pyr_redox_3: Pyridine 98.9 5E-09 1.1E-13 95.0 10.1 35 51-85 1-36 (203)
151 PRK08958 sdhA succinate dehydr 98.9 3.8E-08 8.2E-13 103.2 17.6 59 247-306 142-206 (588)
152 PTZ00139 Succinate dehydrogena 98.9 4E-08 8.7E-13 103.5 17.7 59 247-306 165-229 (617)
153 PRK06452 sdhA succinate dehydr 98.9 4.5E-08 9.7E-13 102.4 17.9 57 248-306 136-198 (566)
154 KOG2844 Dimethylglycine dehydr 98.9 3.7E-07 8.1E-12 91.3 23.0 56 249-306 188-243 (856)
155 PRK12844 3-ketosteroid-delta-1 98.9 5.7E-08 1.2E-12 101.4 18.5 59 247-307 207-270 (557)
156 PRK07573 sdhA succinate dehydr 98.9 7.3E-08 1.6E-12 101.9 19.0 53 252-306 174-232 (640)
157 PLN02815 L-aspartate oxidase 98.9 1.1E-07 2.4E-12 99.3 19.9 40 45-85 27-66 (594)
158 PRK07804 L-aspartate oxidase; 98.9 3.8E-08 8.2E-13 102.4 16.3 59 247-306 143-210 (541)
159 TIGR01812 sdhA_frdA_Gneg succi 98.9 6.1E-08 1.3E-12 102.0 18.1 57 248-306 129-191 (566)
160 PRK09078 sdhA succinate dehydr 98.9 6E-08 1.3E-12 102.0 17.9 60 247-307 148-213 (598)
161 PRK05945 sdhA succinate dehydr 98.9 6.3E-08 1.4E-12 101.7 17.9 58 247-306 134-197 (575)
162 PRK07057 sdhA succinate dehydr 98.9 9.7E-08 2.1E-12 100.3 19.0 59 247-306 147-211 (591)
163 PRK08626 fumarate reductase fl 98.9 6.8E-09 1.5E-13 109.9 10.3 57 248-306 158-220 (657)
164 PRK12837 3-ketosteroid-delta-1 98.9 1.1E-07 2.5E-12 98.4 18.2 40 46-86 6-45 (513)
165 COG3075 GlpB Anaerobic glycero 98.9 9.8E-08 2.1E-12 87.6 15.3 63 249-313 259-324 (421)
166 KOG2614 Kynurenine 3-monooxyge 98.9 9.5E-08 2.1E-12 91.0 15.7 36 47-82 2-37 (420)
167 PRK12831 putative oxidoreducta 98.9 3.4E-08 7.3E-13 100.8 13.8 43 45-87 138-180 (464)
168 PRK06116 glutathione reductase 98.9 3.8E-08 8.3E-13 100.7 14.3 61 247-308 207-267 (450)
169 TIGR01789 lycopene_cycl lycope 98.8 1.2E-06 2.5E-11 86.9 24.2 37 49-85 1-39 (370)
170 PRK07803 sdhA succinate dehydr 98.8 9.4E-08 2E-12 101.0 17.4 40 46-85 7-46 (626)
171 PF04820 Trp_halogenase: Trypt 98.8 3E-07 6.5E-12 93.3 20.3 55 250-306 156-211 (454)
172 TIGR03197 MnmC_Cterm tRNA U-34 98.8 3.1E-07 6.6E-12 92.0 20.0 57 248-308 135-192 (381)
173 PRK07395 L-aspartate oxidase; 98.8 1.7E-08 3.6E-13 104.9 11.1 59 247-305 133-196 (553)
174 PF12831 FAD_oxidored: FAD dep 98.8 4.5E-09 9.8E-14 106.2 6.7 57 254-312 96-156 (428)
175 PRK06416 dihydrolipoamide dehy 98.8 1.5E-08 3.3E-13 104.1 10.6 60 248-309 213-275 (462)
176 TIGR00551 nadB L-aspartate oxi 98.8 8.4E-08 1.8E-12 98.9 16.0 58 248-307 128-190 (488)
177 PRK08275 putative oxidoreducta 98.8 1.4E-07 3E-12 98.7 17.7 58 248-306 137-200 (554)
178 TIGR01421 gluta_reduc_1 glutat 98.8 6E-08 1.3E-12 98.9 14.7 62 247-310 206-269 (450)
179 TIGR01292 TRX_reduct thioredox 98.8 4.6E-08 9.9E-13 94.6 12.9 37 48-85 1-37 (300)
180 COG3573 Predicted oxidoreducta 98.8 3.6E-08 7.8E-13 90.4 11.0 41 45-85 3-45 (552)
181 TIGR01424 gluta_reduc_2 glutat 98.8 8.1E-08 1.8E-12 98.0 15.1 38 47-85 2-39 (446)
182 PRK06854 adenylylsulfate reduc 98.8 2.5E-07 5.5E-12 97.5 19.1 56 249-306 133-195 (608)
183 PRK12779 putative bifunctional 98.8 6.3E-08 1.4E-12 106.1 14.9 62 46-107 305-372 (944)
184 PRK08010 pyridine nucleotide-d 98.8 6E-08 1.3E-12 98.9 13.9 58 248-308 199-256 (441)
185 TIGR01350 lipoamide_DH dihydro 98.8 3.6E-08 7.8E-13 101.3 12.1 58 248-307 211-270 (461)
186 PRK06263 sdhA succinate dehydr 98.8 1.2E-07 2.7E-12 98.9 16.1 59 247-306 133-197 (543)
187 PTZ00058 glutathione reductase 98.8 1.7E-07 3.7E-12 97.1 16.7 63 247-310 277-340 (561)
188 PRK08205 sdhA succinate dehydr 98.8 1.9E-07 4.1E-12 98.2 16.5 58 248-306 140-206 (583)
189 PRK06069 sdhA succinate dehydr 98.8 3.5E-07 7.5E-12 96.3 18.2 57 248-306 137-200 (577)
190 TIGR01316 gltA glutamate synth 98.8 1.1E-07 2.5E-12 96.7 14.2 44 44-87 130-173 (449)
191 KOG2853 Possible oxidoreductas 98.7 6.3E-07 1.4E-11 82.7 16.7 82 395-486 401-482 (509)
192 PTZ00306 NADH-dependent fumara 98.7 3.4E-07 7.4E-12 103.4 18.5 41 45-85 407-447 (1167)
193 TIGR02053 MerA mercuric reduct 98.7 1.4E-07 3.1E-12 96.9 14.3 60 248-308 207-268 (463)
194 PRK08641 sdhA succinate dehydr 98.7 2.1E-07 4.6E-12 97.7 15.8 39 47-85 3-41 (589)
195 COG2072 TrkA Predicted flavopr 98.7 9.4E-08 2E-12 96.6 12.3 45 43-87 4-49 (443)
196 PF00743 FMO-like: Flavin-bind 98.7 7.5E-08 1.6E-12 99.0 11.4 39 48-86 2-40 (531)
197 PRK08071 L-aspartate oxidase; 98.7 2.1E-07 4.5E-12 96.2 14.7 56 248-306 130-190 (510)
198 PF06039 Mqo: Malate:quinone o 98.7 9.4E-08 2E-12 92.8 11.1 88 248-344 181-275 (488)
199 KOG1439 RAB proteins geranylge 98.7 2.1E-07 4.5E-12 87.9 12.8 242 46-301 3-284 (440)
200 TIGR02485 CobZ_N-term precorri 98.7 4.4E-07 9.6E-12 92.3 16.3 58 248-305 123-182 (432)
201 PRK14694 putative mercuric red 98.7 3.3E-08 7.1E-13 101.5 8.1 60 248-310 218-277 (468)
202 PRK12775 putative trifunctiona 98.7 2.5E-07 5.5E-12 102.4 15.5 62 46-107 429-496 (1006)
203 TIGR03140 AhpF alkyl hydropero 98.7 1.5E-07 3.2E-12 97.7 12.9 39 45-85 210-248 (515)
204 PLN02507 glutathione reductase 98.7 2.2E-07 4.8E-12 95.7 14.0 62 246-310 242-304 (499)
205 PRK07818 dihydrolipoamide dehy 98.7 1.7E-07 3.7E-12 96.3 13.1 59 248-308 213-275 (466)
206 TIGR01811 sdhA_Bsu succinate d 98.7 5.6E-07 1.2E-11 94.7 16.9 58 247-305 128-195 (603)
207 TIGR01176 fum_red_Fp fumarate 98.7 8.4E-07 1.8E-11 92.9 17.8 58 247-306 131-195 (580)
208 COG1249 Lpd Pyruvate/2-oxoglut 98.7 1.3E-07 2.8E-12 94.7 11.1 60 246-308 212-274 (454)
209 PRK11749 dihydropyrimidine deh 98.7 4.9E-07 1.1E-11 92.6 15.4 43 45-87 138-180 (457)
210 PRK09231 fumarate reductase fl 98.7 7.8E-07 1.7E-11 93.4 17.2 57 248-306 133-196 (582)
211 TIGR02462 pyranose_ox pyranose 98.7 7.7E-07 1.7E-11 91.1 16.5 39 48-86 1-39 (544)
212 PRK07512 L-aspartate oxidase; 98.7 4E-07 8.7E-12 94.2 14.6 58 247-306 135-197 (513)
213 PRK05976 dihydrolipoamide dehy 98.7 7.1E-07 1.5E-11 91.9 16.3 39 46-85 3-41 (472)
214 PRK06475 salicylate hydroxylas 98.7 4.3E-07 9.4E-12 91.5 14.4 58 48-107 3-60 (400)
215 PRK15317 alkyl hydroperoxide r 98.6 2.3E-07 5E-12 96.4 12.6 39 45-85 209-247 (517)
216 TIGR03219 salicylate_mono sali 98.6 3.6E-07 7.7E-12 92.6 13.6 58 48-107 1-59 (414)
217 PRK12769 putative oxidoreducta 98.6 1.3E-06 2.9E-11 93.3 18.5 42 46-87 326-367 (654)
218 PLN02546 glutathione reductase 98.6 1.3E-06 2.8E-11 90.7 17.7 33 46-78 78-110 (558)
219 PRK06467 dihydrolipoamide dehy 98.6 7.3E-07 1.6E-11 91.5 15.8 40 46-85 3-42 (471)
220 TIGR03143 AhpF_homolog putativ 98.6 3E-07 6.4E-12 96.2 13.0 39 46-85 3-41 (555)
221 COG2509 Uncharacterized FAD-de 98.6 1.9E-05 4E-10 76.5 23.9 58 249-308 174-232 (486)
222 COG0492 TrxB Thioredoxin reduc 98.6 2E-07 4.4E-12 88.6 10.3 53 250-306 63-115 (305)
223 PRK09897 hypothetical protein; 98.6 3.4E-07 7.4E-12 93.9 12.5 37 47-83 1-39 (534)
224 PRK02106 choline dehydrogenase 98.6 4.4E-07 9.6E-12 95.3 13.6 54 259-314 212-270 (560)
225 PRK12778 putative bifunctional 98.6 6.2E-07 1.3E-11 97.4 14.8 43 45-87 429-471 (752)
226 TIGR01372 soxA sarcosine oxida 98.6 1.7E-06 3.6E-11 96.4 18.1 42 46-87 162-203 (985)
227 KOG2404 Fumarate reductase, fl 98.6 4.5E-07 9.8E-12 82.9 11.1 37 49-85 11-47 (477)
228 PRK09077 L-aspartate oxidase; 98.6 1.8E-06 3.8E-11 90.0 17.0 40 45-85 6-45 (536)
229 TIGR02352 thiamin_ThiO glycine 98.6 5.2E-06 1.1E-10 81.7 19.5 195 248-485 137-335 (337)
230 KOG0042 Glycerol-3-phosphate d 98.6 1.7E-07 3.6E-12 91.6 8.4 42 45-86 65-106 (680)
231 KOG1335 Dihydrolipoamide dehyd 98.6 1.1E-06 2.4E-11 82.4 13.2 66 244-311 248-319 (506)
232 PF13454 NAD_binding_9: FAD-NA 98.6 2E-06 4.3E-11 74.0 13.7 48 254-304 107-155 (156)
233 PRK06327 dihydrolipoamide dehy 98.5 2.7E-06 5.8E-11 87.6 17.0 33 46-78 3-35 (475)
234 KOG1298 Squalene monooxygenase 98.5 3.9E-06 8.5E-11 78.9 15.8 63 44-108 42-104 (509)
235 TIGR01810 betA choline dehydro 98.5 7.7E-07 1.7E-11 93.0 12.5 54 259-314 205-263 (532)
236 PF01134 GIDA: Glucose inhibit 98.5 9E-07 2E-11 86.0 11.2 48 254-304 101-150 (392)
237 TIGR02061 aprA adenosine phosp 98.5 8.8E-06 1.9E-10 85.3 18.7 57 250-306 128-191 (614)
238 PRK09564 coenzyme A disulfide 98.5 1.6E-06 3.5E-11 88.7 12.6 64 247-313 190-253 (444)
239 PRK13800 putative oxidoreducta 98.4 8.6E-06 1.9E-10 90.0 17.8 36 46-81 12-47 (897)
240 PTZ00318 NADH dehydrogenase-li 98.4 1.1E-05 2.3E-10 81.9 16.4 53 247-305 227-279 (424)
241 TIGR01438 TGR thioredoxin and 98.4 9.8E-06 2.1E-10 83.3 16.2 62 247-310 219-283 (484)
242 PRK13512 coenzyme A disulfide 98.4 2.3E-06 4.9E-11 87.1 10.6 60 247-312 188-247 (438)
243 COG5044 MRS6 RAB proteins gera 98.3 2E-05 4.2E-10 74.0 15.3 238 46-302 5-280 (434)
244 PLN02852 ferredoxin-NADP+ redu 98.3 1.2E-06 2.6E-11 88.8 8.0 45 45-89 24-70 (491)
245 TIGR00136 gidA glucose-inhibit 98.3 6E-06 1.3E-10 84.8 13.0 34 48-81 1-34 (617)
246 COG2303 BetA Choline dehydroge 98.3 4.9E-06 1.1E-10 86.4 12.5 56 257-314 212-274 (542)
247 PRK07845 flavoprotein disulfid 98.3 1.9E-05 4.2E-10 81.0 16.1 38 47-85 1-38 (466)
248 KOG4405 GDP dissociation inhib 98.3 1.9E-05 4.1E-10 74.8 14.3 150 149-303 188-342 (547)
249 KOG1399 Flavin-containing mono 98.3 8.6E-07 1.9E-11 88.4 5.3 41 46-86 5-45 (448)
250 KOG3923 D-aspartate oxidase [A 98.2 9.4E-05 2E-09 67.5 17.0 184 249-488 152-338 (342)
251 KOG0405 Pyridine nucleotide-di 98.2 5.3E-06 1.2E-10 76.9 8.9 63 244-307 226-288 (478)
252 COG1148 HdrA Heterodisulfide r 98.2 1.4E-06 3E-11 84.3 5.1 42 46-87 123-164 (622)
253 TIGR03315 Se_ygfK putative sel 98.2 1.6E-06 3.4E-11 94.6 6.1 42 46-87 536-577 (1012)
254 KOG2665 Predicted FAD-dependen 98.2 1.1E-05 2.4E-10 73.9 10.3 41 43-83 44-86 (453)
255 PRK06115 dihydrolipoamide dehy 98.2 1.5E-06 3.3E-11 89.1 5.3 39 47-85 3-41 (466)
256 PLN02785 Protein HOTHEAD 98.2 8.2E-05 1.8E-09 77.9 17.6 36 45-81 53-88 (587)
257 COG0445 GidA Flavin-dependent 98.2 7.7E-05 1.7E-09 74.0 15.8 34 46-79 3-36 (621)
258 PRK06292 dihydrolipoamide dehy 98.1 2.9E-06 6.3E-11 87.2 5.5 39 46-85 2-40 (460)
259 COG0029 NadB Aspartate oxidase 98.1 3.1E-05 6.8E-10 75.9 11.7 62 242-305 127-195 (518)
260 PRK09853 putative selenate red 98.1 3.8E-06 8.1E-11 91.2 6.0 43 45-87 537-579 (1019)
261 PRK14727 putative mercuric red 98.1 4.4E-06 9.6E-11 86.0 6.3 61 247-310 227-287 (479)
262 PRK14989 nitrite reductase sub 98.1 7.6E-05 1.6E-09 81.4 15.4 63 249-312 188-251 (847)
263 TIGR03169 Nterm_to_SelD pyridi 98.1 0.00012 2.7E-09 72.7 15.6 52 249-307 192-244 (364)
264 PTZ00188 adrenodoxin reductase 98.1 9.2E-06 2E-10 81.2 7.3 44 46-89 38-82 (506)
265 PRK04965 NADH:flavorubredoxin 98.0 3.7E-05 7.9E-10 76.9 11.4 43 259-306 69-111 (377)
266 PRK12810 gltD glutamate syntha 98.0 7.8E-06 1.7E-10 84.0 6.3 43 45-87 141-183 (471)
267 PTZ00367 squalene epoxidase; P 98.0 7E-06 1.5E-10 85.3 5.6 60 46-107 32-92 (567)
268 PRK05335 tRNA (uracil-5-)-meth 98.0 7.5E-06 1.6E-10 80.5 5.4 36 47-82 2-37 (436)
269 PRK13748 putative mercuric red 98.0 6.8E-06 1.5E-10 86.7 5.4 61 247-310 309-369 (561)
270 PRK09754 phenylpropionate diox 98.0 0.0001 2.2E-09 74.1 13.4 36 47-82 144-179 (396)
271 PTZ00153 lipoamide dehydrogena 98.0 1.4E-05 3.1E-10 84.2 7.0 46 46-91 115-162 (659)
272 PRK06567 putative bifunctional 97.9 1.1E-05 2.5E-10 86.5 6.0 37 45-81 381-417 (1028)
273 PRK04965 NADH:flavorubredoxin 97.9 0.00015 3.3E-09 72.4 13.3 55 254-311 189-244 (377)
274 PRK12814 putative NADPH-depend 97.9 1.4E-05 3E-10 85.2 5.9 42 46-87 192-233 (652)
275 PRK10262 thioredoxin reductase 97.9 1.2E-05 2.7E-10 78.4 5.1 40 46-86 5-44 (321)
276 PF07156 Prenylcys_lyase: Pren 97.9 0.00012 2.6E-09 71.6 11.7 116 178-306 66-187 (368)
277 PTZ00052 thioredoxin reductase 97.9 1.3E-05 2.8E-10 82.8 5.2 63 247-311 221-283 (499)
278 TIGR01318 gltD_gamma_fam gluta 97.9 1.8E-05 3.9E-10 81.0 6.1 62 46-107 140-207 (467)
279 PRK12809 putative oxidoreducta 97.9 1.7E-05 3.8E-10 84.5 6.1 62 46-107 309-376 (639)
280 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1.7E-05 3.7E-10 78.5 5.0 36 48-83 1-36 (433)
281 KOG4716 Thioredoxin reductase 97.8 2.7E-05 5.8E-10 72.1 5.5 68 243-311 233-305 (503)
282 PF07992 Pyr_redox_2: Pyridine 97.8 2.3E-05 5.1E-10 70.7 5.2 33 49-81 1-33 (201)
283 PRK12770 putative glutamate sy 97.8 3.2E-05 6.9E-10 76.5 6.1 43 45-87 16-58 (352)
284 TIGR01317 GOGAT_sm_gam glutama 97.8 3E-05 6.5E-10 79.8 6.1 42 46-87 142-183 (485)
285 KOG1800 Ferredoxin/adrenodoxin 97.8 2.8E-05 6.1E-10 73.2 5.2 60 17-90 4-65 (468)
286 COG0493 GltD NADPH-dependent g 97.8 4.2E-05 9E-10 76.9 6.9 61 47-107 123-189 (457)
287 KOG0399 Glutamate synthase [Am 97.8 2.4E-05 5.2E-10 82.8 5.1 41 46-86 1784-1824(2142)
288 TIGR01423 trypano_reduc trypan 97.8 2.7E-05 6E-10 79.9 5.4 62 247-310 230-292 (486)
289 PF13434 K_oxygenase: L-lysine 97.8 0.00032 6.8E-09 68.5 12.5 36 47-82 2-38 (341)
290 PF00070 Pyr_redox: Pyridine n 97.8 5.4E-05 1.2E-09 56.8 5.5 35 49-83 1-35 (80)
291 COG4529 Uncharacterized protei 97.8 0.00025 5.4E-09 69.8 11.3 38 47-84 1-41 (474)
292 TIGR02374 nitri_red_nirB nitri 97.8 0.0001 2.2E-09 80.4 9.6 44 259-306 65-108 (785)
293 COG1053 SdhA Succinate dehydro 97.7 3.8E-05 8.3E-10 79.4 5.6 42 44-85 3-44 (562)
294 PRK06912 acoL dihydrolipoamide 97.7 4E-05 8.6E-10 78.6 5.8 58 248-308 211-270 (458)
295 PRK12771 putative glutamate sy 97.7 5E-05 1.1E-09 80.0 6.2 63 45-107 135-203 (564)
296 PRK05976 dihydrolipoamide dehy 97.7 0.00061 1.3E-08 70.3 13.9 34 47-80 180-213 (472)
297 TIGR03385 CoA_CoA_reduc CoA-di 97.7 0.00053 1.1E-08 69.8 12.9 56 254-313 185-240 (427)
298 TIGR03377 glycerol3P_GlpA glyc 97.6 0.013 2.8E-07 61.2 22.5 58 249-308 129-192 (516)
299 PRK13984 putative oxidoreducta 97.6 9.3E-05 2E-09 78.7 6.5 43 45-87 281-323 (604)
300 PRK06115 dihydrolipoamide dehy 97.6 0.0011 2.4E-08 68.2 14.1 35 47-81 174-208 (466)
301 PRK07845 flavoprotein disulfid 97.6 0.00095 2.1E-08 68.6 13.6 54 254-309 224-277 (466)
302 TIGR02374 nitri_red_nirB nitri 97.6 0.00056 1.2E-08 74.7 12.3 55 254-311 188-243 (785)
303 PRK08255 salicylyl-CoA 5-hydro 97.6 6.6E-05 1.4E-09 81.7 5.1 35 48-82 1-37 (765)
304 PRK06327 dihydrolipoamide dehy 97.6 0.0012 2.6E-08 68.2 14.0 35 47-81 183-217 (475)
305 PRK06912 acoL dihydrolipoamide 97.6 0.0013 2.7E-08 67.6 14.1 36 47-82 170-205 (458)
306 COG0446 HcaD Uncharacterized N 97.6 0.00059 1.3E-08 69.1 11.7 38 47-84 136-173 (415)
307 TIGR01424 gluta_reduc_2 glutat 97.6 0.0011 2.3E-08 67.9 13.5 34 47-80 166-199 (446)
308 TIGR01423 trypano_reduc trypan 97.5 0.0016 3.5E-08 66.9 13.6 36 47-82 187-225 (486)
309 PRK14727 putative mercuric red 97.4 0.002 4.4E-08 66.5 13.2 33 47-79 188-220 (479)
310 PRK07846 mycothione reductase; 97.4 0.002 4.2E-08 66.0 13.0 35 47-81 166-200 (451)
311 PRK13748 putative mercuric red 97.4 0.002 4.2E-08 68.2 13.3 33 47-79 270-302 (561)
312 KOG2960 Protein involved in th 97.4 7.6E-05 1.7E-09 64.4 1.6 61 47-107 76-143 (328)
313 KOG1238 Glucose dehydrogenase/ 97.4 0.0031 6.7E-08 64.5 13.2 39 44-82 54-93 (623)
314 TIGR03862 flavo_PP4765 unchara 97.4 0.0026 5.6E-08 62.5 12.2 62 240-306 78-141 (376)
315 PTZ00052 thioredoxin reductase 97.3 0.0029 6.2E-08 65.6 13.2 33 47-79 182-214 (499)
316 PLN02546 glutathione reductase 97.3 0.004 8.6E-08 65.0 13.5 34 47-80 252-285 (558)
317 KOG0404 Thioredoxin reductase 97.3 0.0017 3.7E-08 56.8 8.7 55 250-308 72-126 (322)
318 KOG1336 Monodehydroascorbate/f 97.2 0.0027 5.8E-08 62.4 10.8 64 248-312 255-319 (478)
319 PRK07846 mycothione reductase; 97.2 0.00039 8.5E-09 71.0 5.2 59 249-311 208-267 (451)
320 PRK09754 phenylpropionate diox 97.2 0.00044 9.6E-09 69.5 5.5 60 249-311 187-246 (396)
321 TIGR03452 mycothione_red mycot 97.2 0.0053 1.2E-07 62.8 12.9 34 47-80 169-202 (452)
322 PRK06467 dihydrolipoamide dehy 97.2 0.0062 1.3E-07 62.7 13.3 36 47-82 174-209 (471)
323 PTZ00153 lipoamide dehydrogena 97.1 0.0092 2E-07 63.4 13.6 36 47-82 312-347 (659)
324 TIGR03452 mycothione_red mycot 97.1 0.00072 1.6E-08 69.2 5.2 59 249-310 211-269 (452)
325 PRK10262 thioredoxin reductase 97.0 0.0054 1.2E-07 59.8 11.0 34 47-80 146-179 (321)
326 PRK06292 dihydrolipoamide dehy 97.0 0.0084 1.8E-07 61.7 12.4 36 47-82 169-204 (460)
327 TIGR03140 AhpF alkyl hydropero 96.8 0.011 2.4E-07 61.7 11.9 33 47-79 352-384 (515)
328 COG3634 AhpF Alkyl hydroperoxi 96.8 0.00074 1.6E-08 63.1 2.4 40 44-85 208-247 (520)
329 PF13434 K_oxygenase: L-lysine 96.7 0.031 6.6E-07 54.7 13.4 36 45-80 188-225 (341)
330 KOG3855 Monooxygenase involved 96.7 0.0043 9.2E-08 59.7 6.8 40 41-80 30-73 (481)
331 COG1206 Gid NAD(FAD)-utilizing 96.6 0.0018 3.9E-08 60.2 3.6 33 48-80 4-36 (439)
332 PRK05675 sdhA succinate dehydr 96.5 0.061 1.3E-06 56.7 14.5 59 247-306 125-189 (570)
333 COG3486 IucD Lysine/ornithine 96.2 0.081 1.7E-06 51.3 12.2 39 44-82 2-41 (436)
334 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0075 1.6E-07 51.8 4.7 32 49-80 1-32 (157)
335 PF03721 UDPG_MGDP_dh_N: UDP-g 96.0 0.0072 1.6E-07 53.3 4.0 33 48-80 1-33 (185)
336 PF02737 3HCDH_N: 3-hydroxyacy 95.9 0.013 2.7E-07 51.6 4.9 32 49-80 1-32 (180)
337 KOG2311 NAD/FAD-utilizing prot 95.7 0.01 2.2E-07 58.2 3.9 35 45-79 26-60 (679)
338 PRK06249 2-dehydropantoate 2-r 95.7 0.018 3.9E-07 55.8 5.4 35 45-79 3-37 (313)
339 PRK01438 murD UDP-N-acetylmura 95.6 0.017 3.6E-07 59.9 5.3 35 47-81 16-50 (480)
340 PRK07251 pyridine nucleotide-d 95.6 0.019 4.1E-07 58.7 5.6 58 47-107 157-214 (438)
341 PRK07819 3-hydroxybutyryl-CoA 95.5 0.018 4E-07 54.8 4.9 33 48-80 6-38 (286)
342 KOG2495 NADH-dehydrogenase (ub 95.5 0.16 3.4E-06 49.6 10.8 108 192-305 209-328 (491)
343 PRK07066 3-hydroxybutyryl-CoA 95.4 0.026 5.5E-07 54.4 5.4 34 47-80 7-40 (321)
344 PRK02705 murD UDP-N-acetylmura 95.4 0.02 4.3E-07 59.0 4.9 34 49-82 2-35 (459)
345 KOG2755 Oxidoreductase [Genera 95.4 0.011 2.4E-07 53.4 2.5 53 49-107 1-55 (334)
346 PRK06129 3-hydroxyacyl-CoA deh 95.4 0.021 4.5E-07 55.2 4.7 33 48-80 3-35 (308)
347 PF02558 ApbA: Ketopantoate re 95.2 0.031 6.7E-07 47.6 5.0 31 50-80 1-31 (151)
348 COG1249 Lpd Pyruvate/2-oxoglut 95.2 0.029 6.3E-07 56.7 5.3 42 45-86 171-212 (454)
349 TIGR01350 lipoamide_DH dihydro 95.2 0.027 5.9E-07 58.0 5.1 58 47-107 170-227 (461)
350 COG1251 NirB NAD(P)H-nitrite r 95.0 0.077 1.7E-06 55.3 7.7 54 254-310 193-247 (793)
351 TIGR02053 MerA mercuric reduct 95.0 0.032 7E-07 57.4 5.1 58 47-107 166-223 (463)
352 TIGR01421 gluta_reduc_1 glutat 94.9 0.041 8.9E-07 56.3 5.6 58 47-107 166-223 (450)
353 PF13738 Pyr_redox_3: Pyridine 94.9 0.034 7.3E-07 50.0 4.5 35 46-80 166-200 (203)
354 COG0569 TrkA K+ transport syst 94.9 0.033 7.2E-07 50.9 4.4 34 48-81 1-34 (225)
355 PRK06370 mercuric reductase; V 94.9 0.04 8.8E-07 56.7 5.5 58 47-107 171-228 (463)
356 PRK06416 dihydrolipoamide dehy 94.8 0.04 8.6E-07 56.8 5.3 39 47-85 172-210 (462)
357 COG1004 Ugd Predicted UDP-gluc 94.8 0.034 7.4E-07 53.7 4.3 33 48-80 1-33 (414)
358 PF01262 AlaDh_PNT_C: Alanine 94.8 0.049 1.1E-06 47.3 5.0 34 46-79 19-52 (168)
359 PRK05249 soluble pyridine nucl 94.8 0.048 1E-06 56.2 5.7 39 47-85 175-213 (461)
360 PRK13512 coenzyme A disulfide 94.8 0.042 9E-07 56.1 5.1 58 47-107 148-205 (438)
361 PRK08293 3-hydroxybutyryl-CoA 94.7 0.045 9.7E-07 52.3 4.9 33 48-80 4-36 (287)
362 PRK14106 murD UDP-N-acetylmura 94.7 0.051 1.1E-06 55.8 5.6 34 47-80 5-38 (450)
363 PRK07818 dihydrolipoamide dehy 94.7 0.046 9.9E-07 56.4 5.2 58 47-107 172-229 (466)
364 PRK07530 3-hydroxybutyryl-CoA 94.7 0.047 1E-06 52.3 4.9 34 47-80 4-37 (292)
365 PRK05708 2-dehydropantoate 2-r 94.6 0.046 1E-06 52.7 4.8 33 47-79 2-34 (305)
366 PRK09260 3-hydroxybutyryl-CoA 94.4 0.049 1.1E-06 52.1 4.3 33 48-80 2-34 (288)
367 TIGR01470 cysG_Nterm siroheme 94.4 0.082 1.8E-06 47.5 5.5 33 48-80 10-42 (205)
368 PF01488 Shikimate_DH: Shikima 94.3 0.091 2E-06 43.7 5.3 34 46-79 11-45 (135)
369 cd01080 NAD_bind_m-THF_DH_Cycl 94.3 0.081 1.8E-06 45.7 5.0 35 45-79 42-77 (168)
370 PRK06522 2-dehydropantoate 2-r 94.2 0.06 1.3E-06 52.0 4.7 32 48-79 1-32 (304)
371 PRK08229 2-dehydropantoate 2-r 94.2 0.057 1.2E-06 53.1 4.6 32 48-79 3-34 (341)
372 PF13241 NAD_binding_7: Putati 94.1 0.047 1E-06 43.0 3.0 34 46-79 6-39 (103)
373 PRK11064 wecC UDP-N-acetyl-D-m 94.1 0.066 1.4E-06 54.0 4.7 34 48-81 4-37 (415)
374 PRK12921 2-dehydropantoate 2-r 94.0 0.069 1.5E-06 51.6 4.6 31 48-78 1-31 (305)
375 TIGR01816 sdhA_forward succina 94.0 0.23 5E-06 52.4 8.7 58 247-306 118-181 (565)
376 PRK04148 hypothetical protein; 93.9 0.069 1.5E-06 43.8 3.7 33 48-81 18-50 (134)
377 PTZ00058 glutathione reductase 93.9 0.088 1.9E-06 55.2 5.4 39 47-85 237-275 (561)
378 PRK05808 3-hydroxybutyryl-CoA 93.9 0.079 1.7E-06 50.5 4.7 33 48-80 4-36 (282)
379 PRK06718 precorrin-2 dehydroge 93.9 0.11 2.4E-06 46.6 5.3 33 47-79 10-42 (202)
380 cd05292 LDH_2 A subgroup of L- 93.8 0.089 1.9E-06 50.7 4.9 33 48-80 1-35 (308)
381 PRK06719 precorrin-2 dehydroge 93.8 0.12 2.7E-06 44.1 5.2 32 46-77 12-43 (157)
382 PRK09564 coenzyme A disulfide 93.7 0.096 2.1E-06 53.6 5.3 37 47-83 149-185 (444)
383 PRK14989 nitrite reductase sub 93.7 0.087 1.9E-06 58.0 5.1 37 47-83 145-181 (847)
384 PRK06035 3-hydroxyacyl-CoA deh 93.7 0.082 1.8E-06 50.6 4.4 33 48-80 4-36 (291)
385 PLN02545 3-hydroxybutyryl-CoA 93.7 0.097 2.1E-06 50.2 5.0 33 48-80 5-37 (295)
386 PRK08268 3-hydroxy-acyl-CoA de 93.6 0.1 2.2E-06 53.9 5.2 36 46-81 6-41 (507)
387 PRK06116 glutathione reductase 93.6 0.11 2.3E-06 53.4 5.3 37 47-83 167-203 (450)
388 PRK06130 3-hydroxybutyryl-CoA 93.5 0.11 2.4E-06 50.4 5.1 33 48-80 5-37 (311)
389 TIGR01316 gltA glutamate synth 93.5 0.096 2.1E-06 53.6 4.9 34 47-80 272-305 (449)
390 TIGR02354 thiF_fam2 thiamine b 93.5 0.13 2.9E-06 45.9 5.1 34 46-79 20-54 (200)
391 PLN02507 glutathione reductase 93.4 0.11 2.4E-06 53.9 5.1 37 47-83 203-239 (499)
392 COG1748 LYS9 Saccharopine dehy 93.4 0.11 2.5E-06 50.8 4.8 33 47-79 1-34 (389)
393 PRK14618 NAD(P)H-dependent gly 93.4 0.13 2.9E-06 50.2 5.4 33 47-79 4-36 (328)
394 COG0686 Ald Alanine dehydrogen 93.3 0.07 1.5E-06 49.6 3.1 34 46-79 167-200 (371)
395 PRK08010 pyridine nucleotide-d 93.3 0.13 2.7E-06 52.7 5.4 58 47-107 158-215 (441)
396 TIGR03143 AhpF_homolog putativ 93.1 0.12 2.6E-06 54.4 4.9 36 47-82 143-178 (555)
397 TIGR01763 MalateDH_bact malate 93.1 0.15 3.2E-06 49.1 5.1 33 48-80 2-35 (305)
398 PRK15317 alkyl hydroperoxide r 93.0 0.13 2.8E-06 53.7 5.0 36 47-82 351-386 (517)
399 TIGR00518 alaDH alanine dehydr 92.9 0.16 3.4E-06 50.4 5.1 34 46-79 166-199 (370)
400 TIGR03026 NDP-sugDHase nucleot 92.9 0.11 2.4E-06 52.5 4.2 33 49-81 2-34 (411)
401 PRK12831 putative oxidoreducta 92.9 0.15 3.2E-06 52.4 5.1 35 46-80 280-314 (464)
402 PRK00094 gpsA NAD(P)H-dependen 92.9 0.15 3.4E-06 49.6 5.0 33 48-80 2-34 (325)
403 KOG2304 3-hydroxyacyl-CoA dehy 92.8 0.13 2.8E-06 45.5 3.7 36 45-80 9-44 (298)
404 PF03446 NAD_binding_2: NAD bi 92.7 0.19 4.1E-06 43.4 4.8 34 47-80 1-34 (163)
405 PLN02353 probable UDP-glucose 92.7 0.15 3.1E-06 52.1 4.6 33 48-80 2-36 (473)
406 PRK14694 putative mercuric red 92.7 0.18 4E-06 51.9 5.5 57 47-107 178-234 (468)
407 PRK14620 NAD(P)H-dependent gly 92.6 0.16 3.5E-06 49.5 4.8 31 49-79 2-32 (326)
408 PRK14619 NAD(P)H-dependent gly 92.6 0.21 4.5E-06 48.3 5.4 34 47-80 4-37 (308)
409 PF00056 Ldh_1_N: lactate/mala 92.6 0.25 5.4E-06 41.4 5.2 33 48-80 1-36 (141)
410 COG0771 MurD UDP-N-acetylmuram 92.6 0.16 3.4E-06 50.9 4.6 36 47-82 7-42 (448)
411 cd01075 NAD_bind_Leu_Phe_Val_D 92.5 0.29 6.2E-06 43.9 5.8 34 46-79 27-60 (200)
412 PRK02472 murD UDP-N-acetylmura 92.4 0.2 4.4E-06 51.3 5.4 34 47-80 5-38 (447)
413 PRK12770 putative glutamate sy 92.4 0.21 4.7E-06 49.3 5.4 33 48-80 173-206 (352)
414 TIGR01292 TRX_reduct thioredox 92.4 0.19 4.2E-06 48.2 5.0 34 47-80 141-174 (300)
415 PF00899 ThiF: ThiF family; I 92.3 0.22 4.7E-06 41.5 4.6 33 47-79 2-35 (135)
416 PRK12549 shikimate 5-dehydroge 92.1 0.24 5.3E-06 47.0 5.2 34 47-80 127-161 (284)
417 KOG3851 Sulfide:quinone oxidor 92.1 0.15 3.2E-06 47.7 3.4 37 45-81 37-75 (446)
418 TIGR01438 TGR thioredoxin and 92.1 0.22 4.7E-06 51.5 5.2 32 48-79 181-212 (484)
419 PRK04308 murD UDP-N-acetylmura 92.1 0.26 5.6E-06 50.5 5.7 35 47-81 5-39 (445)
420 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.9 0.21 4.5E-06 51.6 4.6 34 48-81 6-39 (503)
421 PRK01710 murD UDP-N-acetylmura 91.8 0.24 5.1E-06 50.9 5.1 33 48-80 15-47 (458)
422 PRK04690 murD UDP-N-acetylmura 91.8 0.23 5.1E-06 51.0 5.0 34 47-80 8-41 (468)
423 PRK09424 pntA NAD(P) transhydr 91.8 0.23 5E-06 50.9 4.8 35 46-80 164-198 (509)
424 PRK06223 malate dehydrogenase; 91.7 0.28 6.1E-06 47.4 5.2 33 48-80 3-36 (307)
425 PTZ00082 L-lactate dehydrogena 91.7 0.33 7.2E-06 47.0 5.6 34 48-81 7-41 (321)
426 cd05191 NAD_bind_amino_acid_DH 91.6 0.5 1.1E-05 35.7 5.4 33 46-78 22-55 (86)
427 PRK15116 sulfur acceptor prote 91.6 0.32 6.9E-06 45.4 5.2 34 46-79 29-63 (268)
428 PTZ00318 NADH dehydrogenase-li 91.6 0.27 5.9E-06 49.9 5.2 57 48-107 174-244 (424)
429 PRK07417 arogenate dehydrogena 91.6 0.24 5.3E-06 47.0 4.5 32 49-80 2-33 (279)
430 COG1893 ApbA Ketopantoate redu 91.6 0.2 4.4E-06 48.1 3.9 34 48-81 1-34 (307)
431 PRK07531 bifunctional 3-hydrox 91.5 0.26 5.6E-06 51.0 5.0 33 48-80 5-37 (495)
432 cd05311 NAD_bind_2_malic_enz N 91.5 0.29 6.3E-06 44.8 4.8 34 47-80 25-61 (226)
433 PRK15057 UDP-glucose 6-dehydro 91.5 0.24 5.2E-06 49.4 4.5 31 49-80 2-32 (388)
434 TIGR01915 npdG NADPH-dependent 91.2 0.32 6.9E-06 44.4 4.7 32 48-79 1-33 (219)
435 KOG1335 Dihydrolipoamide dehyd 91.2 0.12 2.6E-06 49.6 1.9 42 46-87 210-251 (506)
436 TIGR02437 FadB fatty oxidation 91.2 0.26 5.7E-06 53.3 4.7 35 46-80 312-346 (714)
437 PRK11730 fadB multifunctional 91.1 0.27 5.8E-06 53.3 4.7 34 47-80 313-346 (715)
438 PRK03369 murD UDP-N-acetylmura 91.1 0.32 7E-06 50.3 5.2 32 48-79 13-44 (488)
439 cd00401 AdoHcyase S-adenosyl-L 91.0 0.35 7.6E-06 48.2 5.1 35 46-80 201-235 (413)
440 PRK00066 ldh L-lactate dehydro 91.0 0.43 9.4E-06 46.1 5.6 35 46-80 5-41 (315)
441 PF02254 TrkA_N: TrkA-N domain 91.0 0.44 9.6E-06 38.3 4.9 31 50-80 1-31 (116)
442 cd05293 LDH_1 A subgroup of L- 91.0 0.41 8.9E-06 46.1 5.4 34 47-80 3-38 (312)
443 PRK11749 dihydropyrimidine deh 90.9 0.34 7.4E-06 49.8 5.1 34 47-80 273-307 (457)
444 PRK12475 thiamine/molybdopteri 90.9 0.38 8.3E-06 46.9 5.1 33 47-79 24-57 (338)
445 COG3634 AhpF Alkyl hydroperoxi 90.9 0.2 4.4E-06 47.4 3.0 34 47-80 354-387 (520)
446 cd05291 HicDH_like L-2-hydroxy 90.9 0.36 7.8E-06 46.6 5.0 32 49-80 2-35 (306)
447 PRK08306 dipicolinate synthase 90.9 0.39 8.5E-06 45.9 5.1 34 47-80 152-185 (296)
448 PRK07688 thiamine/molybdopteri 90.8 0.4 8.6E-06 46.8 5.1 33 47-79 24-57 (339)
449 PF00070 Pyr_redox: Pyridine n 90.7 0.69 1.5E-05 34.3 5.4 40 247-289 39-78 (80)
450 COG1252 Ndh NADH dehydrogenase 90.7 0.21 4.5E-06 49.5 3.1 59 47-108 155-226 (405)
451 COG1250 FadB 3-hydroxyacyl-CoA 90.6 0.34 7.4E-06 46.0 4.3 33 47-79 3-35 (307)
452 PLN02712 arogenate dehydrogena 90.5 0.79 1.7E-05 49.1 7.5 36 45-80 50-85 (667)
453 PRK00141 murD UDP-N-acetylmura 90.3 0.45 9.8E-06 49.0 5.4 33 47-79 15-47 (473)
454 PRK12548 shikimate 5-dehydroge 90.3 0.47 1E-05 45.3 5.1 34 47-80 126-160 (289)
455 TIGR02441 fa_ox_alpha_mit fatt 90.2 0.37 8.1E-06 52.3 4.8 35 46-80 334-368 (737)
456 TIGR02356 adenyl_thiF thiazole 90.2 0.55 1.2E-05 42.1 5.2 34 46-79 20-54 (202)
457 PRK08644 thiamine biosynthesis 90.2 0.53 1.2E-05 42.5 5.1 34 46-79 27-61 (212)
458 PRK12778 putative bifunctional 90.1 0.36 7.7E-06 53.0 4.7 34 47-80 570-604 (752)
459 TIGR02355 moeB molybdopterin s 90.1 0.52 1.1E-05 43.5 5.1 33 47-79 24-57 (240)
460 cd01487 E1_ThiF_like E1_ThiF_l 90.1 0.5 1.1E-05 41.2 4.7 31 49-79 1-32 (174)
461 TIGR02853 spore_dpaA dipicolin 90.0 0.5 1.1E-05 45.0 5.0 34 47-80 151-184 (287)
462 PRK05562 precorrin-2 dehydroge 90.0 0.55 1.2E-05 42.5 5.0 32 46-77 24-55 (223)
463 PLN00016 RNA-binding protein; 90.0 0.4 8.7E-06 47.9 4.6 36 45-80 50-90 (378)
464 cd01078 NAD_bind_H4MPT_DH NADP 90.0 0.59 1.3E-05 41.7 5.2 33 47-79 28-61 (194)
465 COG2072 TrkA Predicted flavopr 89.9 0.46 1E-05 48.4 5.0 38 45-82 173-210 (443)
466 PRK00421 murC UDP-N-acetylmura 89.8 0.44 9.6E-06 49.0 4.9 33 48-80 8-41 (461)
467 KOG1346 Programmed cell death 89.7 0.56 1.2E-05 45.6 5.0 72 244-317 385-460 (659)
468 PRK07060 short chain dehydroge 89.7 0.69 1.5E-05 42.8 5.7 34 46-79 8-42 (245)
469 cd01483 E1_enzyme_family Super 89.7 0.64 1.4E-05 39.1 4.9 31 49-79 1-32 (143)
470 PRK02006 murD UDP-N-acetylmura 89.6 0.55 1.2E-05 48.9 5.3 33 48-80 8-40 (498)
471 TIGR00561 pntA NAD(P) transhyd 89.5 0.5 1.1E-05 48.4 4.8 34 47-80 164-197 (511)
472 PLN02172 flavin-containing mon 89.5 0.46 9.9E-06 48.7 4.6 35 46-80 203-237 (461)
473 TIGR00507 aroE shikimate 5-deh 89.5 0.58 1.3E-05 44.2 5.0 33 47-79 117-149 (270)
474 PRK01368 murD UDP-N-acetylmura 89.5 0.5 1.1E-05 48.4 4.9 31 48-79 7-37 (454)
475 TIGR02440 FadJ fatty oxidation 89.4 0.49 1.1E-05 51.2 5.0 35 46-80 303-338 (699)
476 PRK05690 molybdopterin biosynt 89.3 0.65 1.4E-05 43.0 5.1 34 46-79 31-65 (245)
477 PRK08328 hypothetical protein; 89.2 0.67 1.5E-05 42.6 5.1 33 47-79 27-60 (231)
478 PLN02657 3,8-divinyl protochlo 89.1 1.2 2.6E-05 44.7 7.2 37 44-80 57-94 (390)
479 PLN02695 GDP-D-mannose-3',5'-e 89.1 0.75 1.6E-05 45.8 5.7 37 43-79 17-54 (370)
480 PF00670 AdoHcyase_NAD: S-aden 89.1 0.61 1.3E-05 39.7 4.2 35 46-80 22-56 (162)
481 PRK15461 NADH-dependent gamma- 89.0 0.58 1.3E-05 44.9 4.7 33 48-80 2-34 (296)
482 cd01339 LDH-like_MDH L-lactate 88.9 0.52 1.1E-05 45.3 4.4 31 50-80 1-32 (300)
483 PLN02602 lactate dehydrogenase 88.9 0.86 1.9E-05 44.6 5.8 33 48-80 38-72 (350)
484 TIGR01505 tartro_sem_red 2-hyd 88.9 0.5 1.1E-05 45.2 4.2 32 49-80 1-32 (291)
485 PRK00683 murD UDP-N-acetylmura 88.8 0.58 1.3E-05 47.4 4.8 33 48-80 4-36 (418)
486 PRK09496 trkA potassium transp 88.7 0.51 1.1E-05 48.5 4.4 33 48-80 1-33 (453)
487 PRK11199 tyrA bifunctional cho 88.6 0.72 1.6E-05 45.8 5.2 35 46-80 97-132 (374)
488 PTZ00117 malate dehydrogenase; 88.6 0.75 1.6E-05 44.6 5.2 34 47-80 5-39 (319)
489 cd01065 NAD_bind_Shikimate_DH 88.6 0.88 1.9E-05 38.7 5.2 34 47-80 19-53 (155)
490 PRK00258 aroE shikimate 5-dehy 88.6 0.75 1.6E-05 43.6 5.1 33 47-79 123-156 (278)
491 PRK11559 garR tartronate semia 88.5 0.65 1.4E-05 44.6 4.7 33 48-80 3-35 (296)
492 PRK11154 fadJ multifunctional 88.5 0.57 1.2E-05 50.8 4.7 35 46-80 308-343 (708)
493 TIGR01809 Shik-DH-AROM shikima 88.4 0.76 1.6E-05 43.7 5.0 33 47-79 125-158 (282)
494 TIGR00936 ahcY adenosylhomocys 88.4 0.75 1.6E-05 45.8 5.0 35 46-80 194-228 (406)
495 cd00757 ThiF_MoeB_HesA_family 88.4 0.83 1.8E-05 41.9 5.1 33 47-79 21-54 (228)
496 PRK12550 shikimate 5-dehydroge 88.4 0.7 1.5E-05 43.5 4.7 33 48-80 123-156 (272)
497 PRK14027 quinate/shikimate deh 88.3 0.83 1.8E-05 43.3 5.2 33 47-79 127-160 (283)
498 PRK12779 putative bifunctional 88.3 0.6 1.3E-05 52.2 4.8 34 47-80 447-480 (944)
499 cd05290 LDH_3 A subgroup of L- 88.0 0.79 1.7E-05 44.0 4.9 32 49-80 1-34 (307)
500 PLN02520 bifunctional 3-dehydr 87.8 0.81 1.7E-05 47.7 5.1 33 47-79 379-411 (529)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=9.5e-44 Score=362.30 Aligned_cols=436 Identities=21% Similarity=0.284 Sum_probs=320.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc-----cc---------cccccccHHHHHHHhCCCCCCCc
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD-----IS---------FWYPFRNIFSLVDELGIKPFTGW 112 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~-----~g---------~~~~~~~~~~~~~~lg~~~~~~~ 112 (530)
+++|+|||||++||++|+.|+++|++|+|+|+.+++||++. +| ++..++++.++++++|+.+...+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~~ 154 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLV 154 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccccc
Confidence 46999999999999999999999999999999999999732 22 33456789999999999854332
Q ss_pred ccc-eee-ccCCcccccccccCCCCCCCcccch-hhhhccCCchhhhhccc------hhHHHhhhccCcchhhhcccCcc
Q 009646 113 MKS-AQY-SEEGLEVEFPIFQDLNQLPTPLGTL-FYTQFSRLPLVDRLTSL------PLMAAVIDFDNTDVAWRKYDSIT 183 (530)
Q Consensus 113 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s 183 (530)
... ..+ ..++....... . ..++.++... .+.....+++.+++... +.+....++......|+..++.+
T Consensus 155 ~~~~~~~~~~~g~~~~~~~--~-~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~s 231 (569)
T PLN02487 155 KDHTHTFVNKGGDVGELDF--R-FPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDIS 231 (569)
T ss_pred cccceeEEecCCEEeeecc--C-CCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccccCCc
Confidence 211 112 22221111000 0 0122222100 12234555555555431 11111111111234456678899
Q ss_pred HHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHHHHHhcCC
Q 009646 184 ARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGC 263 (530)
Q Consensus 184 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~ 263 (530)
+.+|+++.+.+++.++++|+|++...++.+++++|+..+...+..+. ......++.+++|+..+.+++++++.|+++|+
T Consensus 232 v~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg 310 (569)
T PLN02487 232 FSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEASLLRMLKGSPDVRLSGPIAKYITDRGG 310 (569)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcceeeecCCCchHHHHHHHHHHHHHcCC
Confidence 99999999888878999999999999999999999998888775432 23334678899999887899999999999999
Q ss_pred EEEcCceeeEEEecCC-CC--eEEEEEE--C--CeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeEEEE
Q 009646 264 EFLDGRRVTDFIYDEE-RC--CISDVVC--G--KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSV 336 (530)
Q Consensus 264 ~i~~~~~V~~I~~~~~-~g--~v~~v~~--~--~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v 336 (530)
+|+++++|++|..+++ +| ++.+|.+ + ++++.+|.||+|+|++.+.+|+++.. ...+.+..+..+.+.++..+
T Consensus 311 ~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~-~~~~~~~~l~~L~~~pi~tv 389 (569)
T PLN02487 311 RFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQW-REYEFFDNIYKLVGVPVVTV 389 (569)
T ss_pred EEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchh-hccHHHhHHhcCCCeeEEEE
Confidence 9999999999998741 23 3667776 3 33689999999999999999998762 23345778899999999999
Q ss_pred EEEeccCCCCCCCCc------eeeccCC-----Ccccee-eec--cccccccCCCCCeEEEEEecCCCCCCCCCHHHHHH
Q 009646 337 KLWFDKKVTVPNVSN------ACSGFGD-----SLAWTF-FDL--NKIYDEHKDDSATVIQADFYHANELMPLKDDQVVA 402 (530)
Q Consensus 337 ~l~~~~~~~~~~~~~------~~~~~~~-----~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eei~~ 402 (530)
+++|++++..+.+.+ .+.+++. ...|.+ .+. ......|.+..++.+.+.++.++++..++++++++
T Consensus 390 ~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~ 469 (569)
T PLN02487 390 QLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVE 469 (569)
T ss_pred EEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHH
Confidence 999999886544211 1333331 223333 231 11111223345677888888888899999999999
Q ss_pred HHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHH
Q 009646 403 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR 482 (530)
Q Consensus 403 ~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~ 482 (530)
.++++|.++||...+..+.+.++.+.+.+.+.+.||+...||...++++|||+||||+.++|| .+||+|+.||.+||+.
T Consensus 470 ~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yP-at~EgAv~SG~~AA~~ 548 (569)
T PLN02487 470 KVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYI-DSMEGATLSGRQAAAY 548 (569)
T ss_pred HHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCc-chHHHHHHHHHHHHHH
Confidence 999999999998776677888899999999999999988889999999999999999999999 8999999999999999
Q ss_pred HHHHhC
Q 009646 483 VVDYLG 488 (530)
Q Consensus 483 il~~~~ 488 (530)
|++...
T Consensus 549 i~~~~~ 554 (569)
T PLN02487 549 ICEAGE 554 (569)
T ss_pred HHHHhh
Confidence 998765
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=2e-41 Score=344.04 Aligned_cols=430 Identities=20% Similarity=0.285 Sum_probs=305.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc-----ccc---------ccccccHHHHHHHhCCCCCCCccc
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD-----ISF---------WYPFRNIFSLVDELGIKPFTGWMK 114 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~-----~g~---------~~~~~~~~~~~~~lg~~~~~~~~~ 114 (530)
+|+|||||++||++|+.|+++|++|+|+|+++++||+.. .|+ +..++++.++++++|+.+...+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 589999999999999999999999999999999999832 232 335678999999999974432222
Q ss_pred c-eeecc-CCcccccccccCCCCCCCcccchh-hhhccCCchhhhhccchhH------HHhhhccCcchhhhcccCccHH
Q 009646 115 S-AQYSE-EGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM------AAVIDFDNTDVAWRKYDSITAR 185 (530)
Q Consensus 115 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~ 185 (530)
. ..+.. ++....... . ..++.++.... +.....+++.++++..... ....++......++..+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~--~-~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 81 HTHTFVNKGGDIGELDF--R-FATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred ceeEEEcCCCccccccc--C-CCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 1 12221 121110000 0 01222221111 1234455666655422211 0111111112345566789999
Q ss_pred HHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHHHHHhcCCEE
Q 009646 186 ELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 265 (530)
Q Consensus 186 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i 265 (530)
+|+++.+.++..++++++|++...++.+++++|+..+...++.+. .......+.+++|+..+.+.+++.+.|++.|++|
T Consensus 158 ~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i 236 (474)
T TIGR02732 158 EWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA-AKTEASKLRMLKGSPDKYLTKPILEYIEARGGKF 236 (474)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCcceeeeecCCcchhHHHHHHHHHHHCCCEE
Confidence 999999888888999999999999999999999998877766544 3344567888888877778888999999999999
Q ss_pred EcCceeeEEEecCC-CC--eEEEEEEC-C---eeEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeEEEEEE
Q 009646 266 LDGRRVTDFIYDEE-RC--CISDVVCG-K---ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKL 338 (530)
Q Consensus 266 ~~~~~V~~I~~~~~-~g--~v~~v~~~-~---~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l 338 (530)
+++++|++|+.++. ++ +++.|... + +++.||+||+|+|++.+.+|+++... .......+..+.+.++..+++
T Consensus 237 ~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~-~~~~~~~l~~l~~~pi~~v~l 315 (474)
T TIGR02732 237 HLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWR-QFEEFDNIYKLDAVPVATVQL 315 (474)
T ss_pred ECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhh-cCHHHhhHhcCCCCCeEEEEE
Confidence 99999999987531 12 35555553 2 45899999999999999999987421 223556778888899999999
Q ss_pred EeccCCCCCCCCc------eeeccC-----CCcccee-eecccccc-ccC-CCCCeEEEEEecCCCCCCCCCHHHHHHHH
Q 009646 339 WFDKKVTVPNVSN------ACSGFG-----DSLAWTF-FDLNKIYD-EHK-DDSATVIQADFYHANELMPLKDDQVVAKA 404 (530)
Q Consensus 339 ~~~~~~~~~~~~~------~~~~~~-----~~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~eei~~~~ 404 (530)
+|++++..+.+.. .+.+++ ....|.+ .+...... .|. +..+.++.+.++.++++.+++++++++.+
T Consensus 316 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 395 (474)
T TIGR02732 316 RYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRV 395 (474)
T ss_pred EeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHH
Confidence 9998876543211 011111 1112322 22121111 232 23345566667777778889999999999
Q ss_pred HHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHH
Q 009646 405 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 484 (530)
Q Consensus 405 l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il 484 (530)
+++|.++||...+..+.+.++.+.+.+.+.+.||+...+|...++.+|||+||||+.++|| ++||+|+.||++||+.|+
T Consensus 396 ~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~p-as~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 396 DKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYI-DSMEGATLSGRQAAAAIL 474 (474)
T ss_pred HHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCch-HHHhHHHHHHHHHHHHhC
Confidence 9999999998776677888899999999999999988889999999999999999999999 899999999999999874
No 3
>PLN02612 phytoene desaturase
Probab=100.00 E-value=9.4e-41 Score=345.35 Aligned_cols=434 Identities=19% Similarity=0.295 Sum_probs=306.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc-----cccc---------cccccHHHHHHHhCCCCC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD-----ISFW---------YPFRNIFSLVDELGIKPF 109 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~-----~g~~---------~~~~~~~~~~~~lg~~~~ 109 (530)
+..+++|+|||||++||+||++|+++|++|+|+|+++++||+.. +|++ ..++++.++++++|+...
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~ 169 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR 169 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence 34568899999999999999999999999999999999999832 3333 346789999999999754
Q ss_pred CCcccc-eee-ccCC-cccccccccCCCC-CCCcccchh--hhhccCCchhhhhccch-hHHHhhhccCcchhhhcccCc
Q 009646 110 TGWMKS-AQY-SEEG-LEVEFPIFQDLNQ-LPTPLGTLF--YTQFSRLPLVDRLTSLP-LMAAVIDFDNTDVAWRKYDSI 182 (530)
Q Consensus 110 ~~~~~~-~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 182 (530)
..+... ..+ .... ..... ...+. ++.++...+ ......+++.+++.... ...... .....+..++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~---~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~---~~~~~~~~~d~~ 243 (567)
T PLN02612 170 LQWKEHSMIFAMPNKPGEFSR---FDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIV---GGQAYVEAQDGL 243 (567)
T ss_pred ceecccceEEEecCCCCceee---CcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhc---ccchhhhhcCcC
Confidence 333222 112 1111 00000 01111 222222111 01112233444333211 111111 111223456789
Q ss_pred cHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHHHHHhcC
Q 009646 183 TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRG 262 (530)
Q Consensus 183 s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G 262 (530)
|+.+|+++.++++.+.+.++.+++...++.+++++|+..++..+..+. ....+..+.++.|+..+.++++|.+.++++|
T Consensus 244 Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l-~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G 322 (567)
T PLN02612 244 SVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFL-QEKHGSKMAFLDGNPPERLCMPIVDHFQSLG 322 (567)
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHH-hccCCceEeeecCCchHHHHHHHHHHHHhcC
Confidence 999999999999998889999998888888999999998877766542 3344567777888766789999999999999
Q ss_pred CEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeEEEEEEEec
Q 009646 263 CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFD 341 (530)
Q Consensus 263 ~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~ 341 (530)
++|++|++|++|+.++ +++++.+.+ +|+++.||+||+|+|+..+..++++... ..+...++..+.+.++.+++++|+
T Consensus 323 ~~I~l~~~V~~I~~~~-~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~-~~~~~~~l~~l~~~~v~~v~l~~d 400 (567)
T PLN02612 323 GEVRLNSRIKKIELND-DGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK-EIPYFKKLDKLVGVPVINVHIWFD 400 (567)
T ss_pred CEEEeCCeeeEEEECC-CCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-CcHHHHHHHhcCCCCeEEEEEEEC
Confidence 9999999999999865 465655665 4668999999999999999988876421 123445566677888999999999
Q ss_pred cCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhHhhcCCC-----
Q 009646 342 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFS----- 416 (530)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~p~~~----- 416 (530)
++++.+..+.++. .......+.+.+..+..|.+++.+++.+.+..+.+|..++++++++.++++|+++||+..
T Consensus 401 r~~~~~~~~~~~~--~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~ 478 (567)
T PLN02612 401 RKLKNTYDHLLFS--RSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQS 478 (567)
T ss_pred cccCCCCCceeec--CCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccC
Confidence 9986443332221 111112344444444445555566766666666778889999999999999999999752
Q ss_pred CCccccceEEeCCCCceecCCCCcccCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHHHHhCC
Q 009646 417 TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 489 (530)
Q Consensus 417 ~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~~~~~ 489 (530)
...+..+.+.+.+.+++.+.|+....+|...+|++||||||||+.++++ ++||||+.||++||+.|++.++.
T Consensus 479 ~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~-~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 479 KAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYL-ASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred CceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCch-hhHHHHHHHHHHHHHHHHHHhcc
Confidence 2345566677788888888888766778888999999999999998998 79999999999999999999874
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=2.8e-38 Score=322.86 Aligned_cols=426 Identities=20% Similarity=0.317 Sum_probs=285.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc-----ccc---------ccccccHHHHHHHhCCCCCCCccc
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD-----ISF---------WYPFRNIFSLVDELGIKPFTGWMK 114 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~-----~g~---------~~~~~~~~~~~~~lg~~~~~~~~~ 114 (530)
+|+|||||++||+||+.|+++|++|+|+|+++++||+.. +|+ ...++++.++++++|+.....+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 589999999999999999999999999999999999831 222 234688999999999874333222
Q ss_pred c-eeeccCCcccccccccCCCCCCCcccchh--hhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHHHHHHh
Q 009646 115 S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLF--YTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQF 191 (530)
Q Consensus 115 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 191 (530)
. ..+...+.... ......+.++.+..... +.....+++.+++.......... ....+.+..+++.|+.+|+++.
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~l~~~ 157 (453)
T TIGR02731 81 HSMIFNQPDKPGT-FSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAI--VRGQKYVEEQDKYTVTEWLRKQ 157 (453)
T ss_pred CceEEecCCCCcc-eeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHH--hcCccchhhhccCCHHHHHHHc
Confidence 1 12211110000 00001112222222111 01111234444433222111100 0011234456889999999999
Q ss_pred CCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHHHHHhcCCEEEcCcee
Q 009646 192 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRV 271 (530)
Q Consensus 192 g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V 271 (530)
++++.+.+.++.|++...++.+++++|+..++..+..+.. ...+....+..|+....+++++.+.+++.|++|++|++|
T Consensus 158 ~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~-~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V 236 (453)
T TIGR02731 158 GVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQ-ERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRL 236 (453)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHh-cCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCee
Confidence 9999988999999998888999999999988777665432 222333445566555678999999998899999999999
Q ss_pred eEEEecCCCCeEEEEEEC-Ce-----eEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeEEEEEEEeccCCC
Q 009646 272 TDFIYDEERCCISDVVCG-KE-----TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT 345 (530)
Q Consensus 272 ~~I~~~~~~g~v~~v~~~-~~-----~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~ 345 (530)
++|...+ ++++++|++. ++ ++.||.||+|+|+..+.++++... ......+++..+.+.++.++++.++++++
T Consensus 237 ~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~-~~~~~~~~~~~~~~~~~~~v~l~~~~~~~ 314 (453)
T TIGR02731 237 KEIVLNE-DGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPW-KQMPFFQKLNGLEGVPVINVHIWFDRKLT 314 (453)
T ss_pred EEEEECC-CCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhh-hcCHHHHHhhcCCCCcEEEEEEEEccccC
Confidence 9998755 4666666663 43 789999999999999988886531 11233445566677788999999999976
Q ss_pred CCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhHhhcCC----CCCccc
Q 009646 346 VPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF----STATVM 421 (530)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~p~~----~~~~i~ 421 (530)
.+. . .++..... .....+.+.....+.+++++++.+.+.....+..++++++++.++++|+++||+. ....++
T Consensus 315 ~~~-~-~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~ 391 (453)
T TIGR02731 315 TVD-H-LLFSRSPL-LSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKIL 391 (453)
T ss_pred CCC-c-eeeeCCCc-ceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEE
Confidence 332 1 11111111 1111221111112233445666655544556677899999999999999999852 223455
Q ss_pred cceEEeCCCCceecCCCCcccCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHH
Q 009646 422 DHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 484 (530)
Q Consensus 422 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il 484 (530)
+..+.+.+++.+.+.||....++...+|++||||||+|++.+++ ++||||+.||++||++|+
T Consensus 392 ~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~-g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 392 KYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYL-ASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred EEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCccc-ccHHHHHHHHHHHHHHhC
Confidence 66666788887777788666677778889999999999998998 799999999999999874
No 5
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=303.39 Aligned_cols=412 Identities=22% Similarity=0.277 Sum_probs=275.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----cccc---------cccccHHHHHHHhCCCCCCCccc-
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----ISFW---------YPFRNIFSLVDELGIKPFTGWMK- 114 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~~---------~~~~~~~~~~~~lg~~~~~~~~~- 114 (530)
+|+|||||++||+||+.|+++|++|+|||+++++||++. +|+. ..++++.++++++|+.....+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~ 80 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRET 80 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCceeeccC
Confidence 599999999999999999999999999999999999943 3332 24567899999999863322211
Q ss_pred ceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHHHHHHhCCC
Q 009646 115 SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCS 194 (530)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~g~~ 194 (530)
...+..++... .+..... ...+..++..++........... ....+..++..++++|+++. ..
T Consensus 81 ~~~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~l~~~-~~ 143 (434)
T PRK07233 81 KTGYYVDGKLY---------PLGTPLE---LLRFPHLSLIDKFRLGLLTLLAR----RIKDWRALDKVPAEEWLRRW-SG 143 (434)
T ss_pred ceEEEECCeEe---------cCCCHHH---HHcCCCCCHHHHHHhHHHHHhhh----hcccccccccccHHHHHHHh-cC
Confidence 11111121110 0110100 00112222233322111111100 01122345678999999986 46
Q ss_pred HHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcC--cceeEeecCCCcchhHHHHHHHHHhcCCEEEcCceee
Q 009646 195 ERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK--NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVT 272 (530)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~--~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~ 272 (530)
++..+.++.+++...++.+++++++.+++..+......... .....+++|| .+.+++.|.+.+++.|++|+++++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~l~~~l~~~g~~v~~~~~V~ 222 (434)
T PRK07233 144 EGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGG-FATLIDALAEAIEARGGEIRLGTPVT 222 (434)
T ss_pred HHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCC-HHHHHHHHHHHHHhcCceEEeCCCee
Confidence 77788899999999999999999998766555433211111 1235567777 46799999999999999999999999
Q ss_pred EEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeEEEEEEEeccCCCCCCCCce
Q 009646 273 DFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA 352 (530)
Q Consensus 273 ~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~ 352 (530)
+|+.++ ++++.+..+++++.||.||+|+|+..+.+++++.+ ......+..+.+.+..++++.++++... .. .
T Consensus 223 ~i~~~~--~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~-~ 294 (434)
T PRK07233 223 SVVIDG--GGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP---ADVLARLRRIDYQGVVCMVLKLRRPLTD--YY-W 294 (434)
T ss_pred EEEEcC--CceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc---HHHHhhhcccCccceEEEEEEecCCCCC--Cc-e
Confidence 999876 55656667778999999999999999998885432 2233456777888888889999887632 11 1
Q ss_pred eeccC--CCccceeeeccccccccCCCCCeEEEEEec-CC-CCCCCCCHHHHHHHHHHHHhHhhcCCCCCccccceEEeC
Q 009646 353 CSGFG--DSLAWTFFDLNKIYDEHKDDSATVIQADFY-HA-NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF 428 (530)
Q Consensus 353 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~eei~~~~l~~L~~~~p~~~~~~i~~~~~~~~ 428 (530)
..... .+... ++..+...+...+++.+++.+.++ .. .++..++++++++.++++|++++|++....++...+.+|
T Consensus 295 ~~~~~~~~~~~~-~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~ 373 (434)
T PRK07233 295 LNINDPGAPFGG-VIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRA 373 (434)
T ss_pred eeecCCCCCcce-EEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEe
Confidence 11011 11111 122222222112233444333322 22 234467889999999999999999876556778888899
Q ss_pred CCCceecCCCCcccCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHHHHhC
Q 009646 429 PKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 488 (530)
Q Consensus 429 ~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~~~~ 488 (530)
+++.+.+.||....++...++.+||||||++.....+ .+||+|+.||++||++|++.+.
T Consensus 374 ~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 374 PYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPED-RSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred ccccccccCchhhcCCCcccCcCCEEEeCCcccCCcc-CchhHHHHHHHHHHHHHhhhhc
Confidence 9999988888766667777788999999996543444 5899999999999999998765
No 6
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=8.3e-33 Score=281.06 Aligned_cols=399 Identities=25% Similarity=0.318 Sum_probs=269.0
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCCCcc----ccc--c---------cccccHHHHHHHhCCCCCCC-cccc-eeeccCCc
Q 009646 61 GAAHHLSKQGFDVTVLDDGNGFGSPDD----ISF--W---------YPFRNIFSLVDELGIKPFTG-WMKS-AQYSEEGL 123 (530)
Q Consensus 61 ~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~--~---------~~~~~~~~~~~~lg~~~~~~-~~~~-~~~~~~~~ 123 (530)
+||+.|+++|++|+|||+++++||++. +|+ + ..++++.++++++|++.... .... ..+..++.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~ 80 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGGR 80 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCCC
Confidence 589999999999999999999999943 322 1 23577899999999984332 1111 12222222
Q ss_pred ccccccccCCCCCCCcccch-hhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHHHHHHhCCCHHHHHHhh
Q 009646 124 EVEFPIFQDLNQLPTPLGTL-FYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVI 202 (530)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~g~~~~~~~~~~ 202 (530)
.... . ...++.++... .+.....++..++.+....+...... ....++..++++|+++.++++.+.+.++
T Consensus 81 ~~~~--~--~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 151 (419)
T TIGR03467 81 LSRL--R--LSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRT-----RFRALDDTTVGDWLQAAGQSERLIERLW 151 (419)
T ss_pred ceee--c--CCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc-----CccccCCCCHHHHHHHcCCCHHHHHHHH
Confidence 1000 0 00122222110 01122334444443333322221111 1134567899999999888888899999
Q ss_pred hhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCe
Q 009646 203 GPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 282 (530)
Q Consensus 203 ~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~ 282 (530)
.+++...++.+++++++..+...+..............+++||+.+.+.+.+++.+++.|++|++|++|++|+.++ ++
T Consensus 152 ~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~--~~ 229 (419)
T TIGR03467 152 EPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA--GG 229 (419)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC--Cc
Confidence 9999999999999999987766554322222223456788888766566678888888899999999999999886 43
Q ss_pred EE-EEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeEEEEEEEeccCCCCCCCCceeeccCCCcc
Q 009646 283 IS-DVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLA 361 (530)
Q Consensus 283 v~-~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (530)
+. .+..+++++.||.||+|+|+..+.+++++. .....+..+.+.++.++++.+++++|.+.+...+ ......
T Consensus 230 ~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~-----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~--~~~~~~ 302 (419)
T TIGR03467 230 IRALVLSGGETLPADAVVLAVPPRHAASLLPGE-----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGL--VGGLAQ 302 (419)
T ss_pred ceEEEecCCccccCCEEEEcCCHHHHHHhCCCc-----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeee--cCCcee
Confidence 32 333456789999999999999999998652 2334567788888889999999998654442211 122233
Q ss_pred ceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcc
Q 009646 362 WTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYK 441 (530)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~ 441 (530)
| +++.+.. .+..+ ++.+.+...+.+...+++++++.++++|+++||......+.+..+.+|..+.+.+.+|...
T Consensus 303 ~-~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 376 (419)
T TIGR03467 303 W-LFDRGQL----AGEPG-YLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNR 376 (419)
T ss_pred E-EEECCcC----CCCCC-EEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccc
Confidence 3 2332211 11222 3333333445566788999999999999999987543456677778888887777788655
Q ss_pred cCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHH
Q 009646 442 YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 484 (530)
Q Consensus 442 ~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il 484 (530)
.++...++.+|||||||+++++++ ++||||+.||.+||++|+
T Consensus 377 ~~~~~~~~~~~l~~aGd~~~~~~~-~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 377 LRPGARTPWPNLFLAGDWTATGWP-ATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred cCCCCCCCcCCEEEecccccCCCc-chHHHHHHHHHHHHHHHh
Confidence 566666788999999999998888 799999999999999986
No 7
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=282.55 Aligned_cols=425 Identities=18% Similarity=0.175 Sum_probs=270.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----ccc---------ccccccHHHHHHHhCCC-CCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----ISF---------WYPFRNIFSLVDELGIK-PFT 110 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~---------~~~~~~~~~~~~~lg~~-~~~ 110 (530)
+.++||+|||||++||+||+.|+++|++|+|+|+++++||++. .|+ ...++.+.+++++++.. ...
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~ 81 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFL 81 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcCCCccc
Confidence 3457999999999999999999999999999999999999832 232 23466789999999863 211
Q ss_pred CcccceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHHHHHH
Q 009646 111 GWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQ 190 (530)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 190 (530)
..........++... .+|.... .....++..+... ......... .....+..++++|+.+
T Consensus 82 ~~~~~~~~~~~g~~~---------~~p~~~~----~~l~~~~~~~~~~---~~~~~~~~~----~~~~~~~~s~~e~l~~ 141 (479)
T PRK07208 82 LRPRLSRIYYRGKFF---------DYPLKAF----DALKNLGLWRTAK---CGASYLKAR----LRPRKEEDSFEDWVIN 141 (479)
T ss_pred cccccceEEECCEEe---------cCCcchh----HHHHhCCHhHHHH---HHHHHHHHh----cCCCCCCCCHHHHHHH
Confidence 111111111122111 1111000 0111122111111 111111000 0011256899999997
Q ss_pred hCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHH---------HHHHHHHhh----------cC--cceeEeecCCCcch
Q 009646 191 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLG---------ILYFIILAH----------QK--NFDLVWCRGTLREK 249 (530)
Q Consensus 191 ~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~---------~l~~~~~~~----------~~--~~~~~~~~gg~~~~ 249 (530)
.+++++.+.++.+++...++.+++++++.+++. .+....... .. .....+++||+ +.
T Consensus 142 -~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~-~~ 219 (479)
T PRK07208 142 -RFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGP-GQ 219 (479)
T ss_pred -hhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCc-ch
Confidence 477899999999999999999999999875432 121111110 00 12345677775 56
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC---C--eeEecCEEEEccChhhHHHhhhhccccChHHHHh
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTLQELIKNSILCNREEFLK 324 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~---~--~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~ 324 (530)
|++.|.+.+.+.|++|++|++|++|..++ ++.+..+..+ + .++.||+||+|+|++.+.+++... ++ ....+.
T Consensus 220 l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~-~~~~~~ 296 (479)
T PRK07208 220 LWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP-PP-PEVRAA 296 (479)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CC-HHHHHH
Confidence 99999999999999999999999999986 3444444432 3 268999999999999999887632 22 233445
Q ss_pred hccccceeEEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCC-eEEEEEec--CCCCCCCCCHHHHH
Q 009646 325 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVIQADFY--HANELMPLKDDQVV 401 (530)
Q Consensus 325 ~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~eei~ 401 (530)
+..+.+.++.++++.++++...+..+..+.+...... .........+...+.+. ..+.+.++ .......+++++++
T Consensus 297 ~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~ 375 (479)
T PRK07208 297 AAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVG-RLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLI 375 (479)
T ss_pred HhCCCcceeEEEEEEecCCCCCCCceEEecCCCCccc-eecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHH
Confidence 6678888888899999887543322211111110000 01000111122222333 33333333 23445578899999
Q ss_pred HHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCC---CCCCCCceEEeeccccCCCCCCcchHHHHHHHH
Q 009646 402 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR---GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLE 478 (530)
Q Consensus 402 ~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~---~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~ 478 (530)
+.++++|.++++ +....+...++.+++.++|.+.+++...... ..++.+|||++|++....+ .++|+|+.||.+
T Consensus 376 ~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~--~~~d~a~~sg~~ 452 (479)
T PRK07208 376 ALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY--NNQDHSMLTAML 452 (479)
T ss_pred HHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc--CChhHHHHHHHH
Confidence 999999999854 3345688888999999999999887544332 2256789999999875555 489999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCC
Q 009646 479 AANRVVDYLGDGSFSKIIPVEED 501 (530)
Q Consensus 479 aA~~il~~~~~~~~~~~~~~~~~ 501 (530)
+|+.|++.- .+.+++|+.-|
T Consensus 453 ~a~~i~~~~---~~~~~~~~~~~ 472 (479)
T PRK07208 453 AVENIIAGE---TKHDIWQVNTE 472 (479)
T ss_pred HHHHHhcCC---ccCCceEeccc
Confidence 999998773 45668887654
No 8
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.3e-33 Score=270.86 Aligned_cols=437 Identities=23% Similarity=0.319 Sum_probs=302.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-----------cc---cccccccccHHHHHHHhCCCCCCCcc
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-----------DD---ISFWYPFRNIFSLVDELGIKPFTGWM 113 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~-----------~~---~g~~~~~~~~~~~~~~lg~~~~~~~~ 113 (530)
++|+|+|||+|||+||+.|+++|++|+|+|+++++||. .| +.|+..|.++++++++++.+....+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 47999999999999999999999999999999999999 22 55778899999999999988433332
Q ss_pred cc-eeeccCCcccccccccCCC--CCCCcccchh-hhhccCCchhhhhccchhHHHhhhccC-cchhhhcccCccHHHHH
Q 009646 114 KS-AQYSEEGLEVEFPIFQDLN--QLPTPLGTLF-YTQFSRLPLVDRLTSLPLMAAVIDFDN-TDVAWRKYDSITARELF 188 (530)
Q Consensus 114 ~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~l 188 (530)
.. ..+...+- ..+...... ..|.+..... +.....++..++.. .+........ ....+++++..++.+||
T Consensus 81 ~~~~~~~~~~~--~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~---~~~~l~~~~~g~~~~~~eld~~s~~d~l 155 (485)
T COG3349 81 EHTKTFVGSGT--RPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIR---FVLRLGDAPIGADRSLRELDKISFADWL 155 (485)
T ss_pred hhhhhhcccCC--CCCcccccccCCCCCcchhhhhhhhccccCHHHHhH---HhhccccccchhHHHHHHHhcccHHHHH
Confidence 21 11211110 011111111 1222211111 12223333333322 2222222111 24556788999999999
Q ss_pred HHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHHHHHhcCCEEEcC
Q 009646 189 KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG 268 (530)
Q Consensus 189 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~ 268 (530)
++.|.........|.++.....+..++.+++...+..+..+...........+++|+..+.+..++.+.+.+.|.+++..
T Consensus 156 ~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~ 235 (485)
T COG3349 156 KEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHAD 235 (485)
T ss_pred HHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeecc
Confidence 99998888888899999989999999999998887777777665544555667788888899999999999999999999
Q ss_pred ceeeEEEecCC--CCeEEEEEECCe---eEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeEEEEEEEeccC
Q 009646 269 RRVTDFIYDEE--RCCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK 343 (530)
Q Consensus 269 ~~V~~I~~~~~--~g~v~~v~~~~~---~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~ 343 (530)
.+|+.|..+.. ...+.++...+. .+.++.++.+.+.......++..-. .+....++..+...++.+++++++..
T Consensus 236 ~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~-~~~~f~~ly~l~~~p~~~~~l~~~~~ 314 (485)
T COG3349 236 YPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWP-KWSNFDGLYGLRLVPVITLHLRFDGW 314 (485)
T ss_pred ceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCccccc-ccccccccccccccceeEEEEeecCc
Confidence 99999987652 234556665544 3445666666666666666654311 12344567788889999999999976
Q ss_pred CCCCCCCceeec------cCCCccceeeeccccccccCCCC-CeEEEEEecCCCCCCCCCHHHHHHHHHHHHhHhhcCCC
Q 009646 344 VTVPNVSNACSG------FGDSLAWTFFDLNKIYDEHKDDS-ATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFS 416 (530)
Q Consensus 344 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~eei~~~~l~~L~~~~p~~~ 416 (530)
.+.........+ ...+....+++....++.+...+ +..+.....+.+.+...+++++.....+++..++|...
T Consensus 315 ~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~ 394 (485)
T COG3349 315 VTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLA 394 (485)
T ss_pred cccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchh
Confidence 543332111011 11122334555444444333222 12333334456677888899999999999999999876
Q ss_pred CCccccceEEeCCCCceecCCCCcccCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCc
Q 009646 417 TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSF 492 (530)
Q Consensus 417 ~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~~~~~~~~ 492 (530)
.+. .+..+.+...+++...||...+||...++++|++++|||+.-.+- .+||+|..||++||+.|++.++....
T Consensus 395 ~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~-~smE~A~~sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 395 EAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYL-GSMEGATLSGLLAANAILDNLGHHAP 468 (485)
T ss_pred ccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCc-CccchhhhhHHHHHHHHHHhhhhcCc
Confidence 655 556666688899999999999999999999999999999976543 79999999999999999988885333
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=5.9e-32 Score=277.64 Aligned_cols=404 Identities=16% Similarity=0.207 Sum_probs=259.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCeEEEEcCCCCCCCCcc----cccc---------cccccHHHHHHHhCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQ----GFDVTVLDDGNGFGSPDD----ISFW---------YPFRNIFSLVDELGIKPF 109 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~----G~~V~vlE~~~~~GG~~~----~g~~---------~~~~~~~~~~~~lg~~~~ 109 (530)
++||+|||||++||+||++|+++ |++|+|+|+++++||++. +|+. ..++++.++++++|++..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV 81 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCcc
Confidence 46999999999999999999999 999999999999999933 3332 235669999999998754
Q ss_pred CCc--ccce-eeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHH
Q 009646 110 TGW--MKSA-QYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARE 186 (530)
Q Consensus 110 ~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 186 (530)
... .... .+..++... .+|...... .....+++.+++... .. .+... ....+.++++
T Consensus 82 ~~~~~~~~~~~~~~~g~~~---------~~p~~~~~~--~~~~~~~~~~~~~~~---~~--~~~~~----~~~~d~s~~e 141 (462)
T TIGR00562 82 LVSDATGQRYVLVNRGKLM---------PVPTKIAPF--VKTGLFSLGGKLRAG---MD--FIRPA----SPGKDESVEE 141 (462)
T ss_pred cccCCCCceEEEECCCcee---------cCCCChHHH--hcCCCCCchhhHHhh---hh--hccCC----CCCCCcCHHH
Confidence 322 1111 122212111 111111100 011111222221110 00 01000 1123589999
Q ss_pred HHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhc------------C-c-----------ceeEee
Q 009646 187 LFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ------------K-N-----------FDLVWC 242 (530)
Q Consensus 187 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~------------~-~-----------~~~~~~ 242 (530)
|+++. +++++.+.++.|++...++.+++++++..+...++....... . . ......
T Consensus 142 ~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (462)
T TIGR00562 142 FVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTL 220 (462)
T ss_pred HHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEec
Confidence 99975 778889999999999999999999999876544432211100 0 0 001223
Q ss_pred cCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccChhhHHHhhhhccccChHH
Q 009646 243 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREE 321 (530)
Q Consensus 243 ~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~ 321 (530)
.||+ +.|++.+++.+.. ++|+++++|++|+.++ +.+ .|.++ ++++.||+||+|+|+..+..++++.+ ...
T Consensus 221 ~gG~-~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~---~~~ 291 (462)
T TIGR00562 221 ATGL-ETLPEEIEKRLKL--TKVYKGTKVTKLSHRG--SNY-TLELDNGVTVETDSVVVTAPHKAAAGLLSELS---NSA 291 (462)
T ss_pred chhH-HHHHHHHHHHhcc--CeEEcCCeEEEEEecC--CcE-EEEECCCcEEEcCEEEECCCHHHHHHHhcccC---HHH
Confidence 4443 4677777766642 7899999999999876 433 35554 45899999999999999999987532 234
Q ss_pred HHhhccccceeEEEEEEEeccCCCCCCCCc--eeeccCC---CccceeeeccccccccCCCCCeEEEEEecC--CCCCCC
Q 009646 322 FLKVLNLASIDVVSVKLWFDKKVTVPNVSN--ACSGFGD---SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMP 394 (530)
Q Consensus 322 ~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 394 (530)
.+.+..+.+.++.++.+.|+++++.....+ .+..... ..++ +++.+ ..+...+.+.+++...+.. ...+.+
T Consensus 292 ~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-i~~s~-~~p~~~p~g~~~l~~~~~g~~~~~~~~ 369 (462)
T TIGR00562 292 SSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGC-IFTSK-LFPNRAPPGKTLLTAYIGGATDESIVD 369 (462)
T ss_pred HHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEE-EEEcc-ccCCcCCCCcEEEEEEeCCCCCccccC
Confidence 556788899999999999988754322111 1111111 1122 33322 2222233344444322222 234567
Q ss_pred CCHHHHHHHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCC----CCCCCceEEeeccccCCCCCCcch
Q 009646 395 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG----FTSFPNLFMAGDWITTRHGSWSQE 470 (530)
Q Consensus 395 ~~~eei~~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~----~~~~~~l~~aG~~~~~g~~~~~ie 470 (530)
.+++++++.++++|.++++ +.. .+.+..+.+|++++|.+.+|+...++.. ..+.+||++||+|... .+||
T Consensus 370 ~~~ee~~~~v~~~L~~~~g-i~~-~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g----~~i~ 443 (462)
T TIGR00562 370 LSENEIINIVLRDLKKVLN-INN-EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG----VGIP 443 (462)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCC-CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC----CcHH
Confidence 8899999999999999996 332 3677889999999999999975433322 2345799999999852 4799
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 009646 471 RSYVTGLEAANRVVDYLG 488 (530)
Q Consensus 471 ga~~sG~~aA~~il~~~~ 488 (530)
+|+.+|+++|++|++.+-
T Consensus 444 ~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 444 DCIDQGKAAASDVLTFLF 461 (462)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999988753
No 10
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=3.7e-32 Score=265.46 Aligned_cols=401 Identities=20% Similarity=0.249 Sum_probs=265.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCCCCCcc----cccc---------cccccHHHHHHHhCCCCCCCc
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGNGFGSPDD----ISFW---------YPFRNIFSLVDELGIKPFTGW 112 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G--~~V~vlE~~~~~GG~~~----~g~~---------~~~~~~~~~~~~lg~~~~~~~ 112 (530)
++|+|||||++||+|||+|+|++ .+|+|||+++++||.+. +||. ...+.+.++++++|+++...+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~ 80 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLLW 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhcc
Confidence 46999999999999999999999 89999999999999943 3433 233678999999999965553
Q ss_pred cc--ceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHHHHHH
Q 009646 113 MK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQ 190 (530)
Q Consensus 113 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 190 (530)
.. ...+..++.....+... ...++.... .+ ...+.....++. ..+.+...++.++++|+++
T Consensus 81 ~~~~~~~i~~~gkl~p~P~~~-i~~ip~~~~------------~~---~~~~~~~~~~~~-~~~~~~~~~d~sv~~f~r~ 143 (444)
T COG1232 81 NSTARKYIYYDGKLHPIPTPT-ILGIPLLLL------------SS---EAGLARALQEFI-RPKSWEPKQDISVGEFIRR 143 (444)
T ss_pred CCcccceEeeCCcEEECCccc-eeecCCccc------------cc---hhHHHHHHHhhh-cccCCCCCCCcCHHHHHHH
Confidence 32 22233333221111000 111111100 00 111111111111 1233455678899999998
Q ss_pred hCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCc----------------ceeEeecCCCcchhHHHH
Q 009646 191 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKN----------------FDLVWCRGTLREKIFEPW 254 (530)
Q Consensus 191 ~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~----------------~~~~~~~gg~~~~l~~~l 254 (530)
. +++++++.++.|++.+.|+.+.+++|+......+.......... ..+...+|| .+.|++++
T Consensus 144 ~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG-~~~l~~al 221 (444)
T COG1232 144 R-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGG-LQSLIEAL 221 (444)
T ss_pred H-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCcc-HHHHHHHH
Confidence 4 88999999999999999999999999984333332222211111 123344566 46788999
Q ss_pred HHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeEE
Q 009646 255 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVV 334 (530)
Q Consensus 255 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~ 334 (530)
.+.+... |+++++|++|..+. .....+..+++++.||.||+|+|++.+.+++++. ...+....+.+.+..
T Consensus 222 ~~~l~~~---i~~~~~V~~i~~~~--~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~-----~~~~~~~~~~~~s~~ 291 (444)
T COG1232 222 AEKLEAK---IRTGTEVTKIDKKG--AGKTIVDVGGEKITADGVISTAPLPELARLLGDE-----AVSKAAKELQYTSVV 291 (444)
T ss_pred HHHhhhc---eeecceeeEEEEcC--CccEEEEcCCceEEcceEEEcCCHHHHHHHcCCc-----chhhhhhhccccceE
Confidence 8777654 99999999999985 3345667778899999999999999999999873 223345677777777
Q ss_pred EEEEEeccCC--CCCCCCceeeccCCC-ccceeeeccccccccCCCCCeEEEEEecCC--CCCCCCCHHHHHHHHHHHHh
Q 009646 335 SVKLWFDKKV--TVPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVSYLS 409 (530)
Q Consensus 335 ~v~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~eei~~~~l~~L~ 409 (530)
.+.+.++++- ..++...+...-... ..-+.++ +..-+...+.+.+++.+.++.. +....+++||+++.++++|.
T Consensus 292 ~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~-S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~ 370 (444)
T COG1232 292 TVVVGLDEKDNPALPDGYGLLIADDDPYILAITFH-SNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLK 370 (444)
T ss_pred EEEEEeccccccCCCCceEEEEecCCCcceeEEEe-cccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHH
Confidence 7788888862 222222222211111 1222332 2222323334666666655543 33456779999999999999
Q ss_pred HhhcCCCCCccccceEEeCCCCceecCCCCcccCCCC----CCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHH
Q 009646 410 KCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG----FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 484 (530)
Q Consensus 410 ~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~----~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il 484 (530)
++++...+ ..+..+.||++++|.|.+|+...+... ..-++||+++|.|... . ++.+++.+|..||++|+
T Consensus 371 ~~~~~~~~--~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g--~--g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 371 KLGGINGD--PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG--V--GLPDCIAAGKEAAEQLL 443 (444)
T ss_pred HHcCcCcc--hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC--C--CchHHHHHHHHHHHHhh
Confidence 99976543 338889999999999999986554333 2234899999999963 2 68999999999999986
No 11
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1.3e-31 Score=274.46 Aligned_cols=409 Identities=15% Similarity=0.205 Sum_probs=254.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCCCCCcc----cccc---------cccccHHHHHHHhCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQ------GFDVTVLDDGNGFGSPDD----ISFW---------YPFRNIFSLVDELGIKP 108 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~------G~~V~vlE~~~~~GG~~~----~g~~---------~~~~~~~~~~~~lg~~~ 108 (530)
++|+|||||++||+||+.|+++ |++|+|||+++++||++. .|+. ..++++.++++++|++.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~ 81 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEE 81 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCcc
Confidence 4799999999999999999986 379999999999999933 2332 23567899999999984
Q ss_pred CCCccc--c-eeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHH
Q 009646 109 FTGWMK--S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITAR 185 (530)
Q Consensus 109 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 185 (530)
...+.. . ..+..++. ...+. .....++...... .....++...++. .+..... .. ....++.|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~p~-~~~~~~p~~~~~~--~~~~~~~~~~~~~---~~~~~~~---~~--~~~~~~~sv~ 149 (463)
T PRK12416 82 EMVYNETGISYIYSDNTL-HPIPS-DTIFGIPMSVESL--FSSTLVSTKGKIV---ALKDFIT---KN--KEFTKDTSLA 149 (463)
T ss_pred ceecCCCCceEEEECCeE-EECCC-CCeecCCCChHHh--hcCCcCCHHHHHH---hhhhhcc---CC--CCCCCCCCHH
Confidence 432221 1 22222221 11000 0001111111110 0111111111111 1111111 01 0123678999
Q ss_pred HHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhh----------------cCcceeEeecCCCcch
Q 009646 186 ELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH----------------QKNFDLVWCRGTLREK 249 (530)
Q Consensus 186 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~----------------~~~~~~~~~~gg~~~~ 249 (530)
+|+++. +++++.+.++.|++...++.++++++.......+..+.... ........++||+ ..
T Consensus 150 ~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~ 227 (463)
T PRK12416 150 LFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGL-ST 227 (463)
T ss_pred HHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCH-HH
Confidence 999984 77888999999999888999999998865443332221110 1112234556764 56
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccc
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 328 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l 328 (530)
|+++|++.+.+ ++|+++++|++|+.++ +++ .|.+ +++++.||+||+|+|+..+.+|++++++ ...+.++
T Consensus 228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l-----~~~~~~~ 297 (463)
T PRK12416 228 IIDRLEEVLTE--TVVKKGAVTTAVSKQG--DRY-EISFANHESIQADYVVLAAPHDIAETLLQSNEL-----NEQFHTF 297 (463)
T ss_pred HHHHHHHhccc--ccEEcCCEEEEEEEcC--CEE-EEEECCCCEEEeCEEEECCCHHHHHhhcCCcch-----hHHHhcC
Confidence 88888887754 6899999999999876 444 4554 4567899999999999999999876422 2245677
Q ss_pred cceeEEEEEEEeccCCCC-CC-CCceeeccCCCc--cceeeeccccccccCCCCCeEEEEEecC-----CCCCCCCCHHH
Q 009646 329 ASIDVVSVKLWFDKKVTV-PN-VSNACSGFGDSL--AWTFFDLNKIYDEHKDDSATVIQADFYH-----ANELMPLKDDQ 399 (530)
Q Consensus 329 ~~~~~~~v~l~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ee 399 (530)
.+.++.++++.|+++.+. +. ..+.+....... ..+.+. +...+.. .+++.++...+.. .+.+..+++++
T Consensus 298 ~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~-s~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~dee 375 (463)
T PRK12416 298 KNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWT-SRKWKHT-SGKQKLLVRMFYKSTNPVYETIKNYSEEE 375 (463)
T ss_pred CCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEee-cCCCCCc-CCCCeEEEEEEeCCCCCCchhhhcCCHHH
Confidence 778899999999976532 22 111221111110 001111 1111111 1234443333332 12355678999
Q ss_pred HHHHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCC----CCCCCCCceEEeeccccCCCCCCcchHHHHH
Q 009646 400 VVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM----RGFTSFPNLFMAGDWITTRHGSWSQERSYVT 475 (530)
Q Consensus 400 i~~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~----~~~~~~~~l~~aG~~~~~g~~~~~iega~~s 475 (530)
+.+.++++|.++|+. . ..+....+.+|..+.|.+.+|+...+. ....+.++|++||+++.+ .+|++|+.|
T Consensus 376 ~~~~~~~~L~~~lG~-~-~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g----~~i~~ai~s 449 (463)
T PRK12416 376 LVRVALYDIEKSLGI-K-GEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG----VGIGACIGN 449 (463)
T ss_pred HHHHHHHHHHHHhCC-C-CCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc----ccHHHHHHH
Confidence 999999999999963 3 246678889999999999888533211 122345899999999853 469999999
Q ss_pred HHHHHHHHHHHhC
Q 009646 476 GLEAANRVVDYLG 488 (530)
Q Consensus 476 G~~aA~~il~~~~ 488 (530)
|+++|++|++.+.
T Consensus 450 g~~aA~~i~~~~~ 462 (463)
T PRK12416 450 GKNTANEIIATLN 462 (463)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997753
No 12
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=1e-31 Score=275.51 Aligned_cols=408 Identities=19% Similarity=0.228 Sum_probs=252.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCCCCCcc----cc---------cccccccHHHHHHHhCCCCCCCc
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGNGFGSPDD----IS---------FWYPFRNIFSLVDELGIKPFTGW 112 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G--~~V~vlE~~~~~GG~~~----~g---------~~~~~~~~~~~~~~lg~~~~~~~ 112 (530)
++|+|||||++||+||+.|+++| ++|+|||+++++||++. +| +...++++.++++++|++.....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~ 80 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDELVA 80 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccceec
Confidence 47999999999999999999988 89999999999999932 22 22345668999999998743211
Q ss_pred c--cceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHHHHHH
Q 009646 113 M--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQ 190 (530)
Q Consensus 113 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 190 (530)
. ....+..++.....+.. ....++...... .....++..+.+. ....+ ....+...++.++++|+++
T Consensus 81 ~~~~~~~~~~~g~~~~~p~~-~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~s~~e~l~~ 149 (451)
T PRK11883 81 NTTGQSYIYVNGKLHPIPPG-TVMGIPTSIAPF--LFAGLVSPIGKLR------AAADL--RPPRWKPGQDQSVGAFFRR 149 (451)
T ss_pred CCCCcceEEECCeEEECCCC-CeeccCCCchhh--hcCCCCCHHHHHH------hhCcc--cCCCCCCCCCcCHHHHHHH
Confidence 1 11122222221111100 000111100000 0001111111111 00111 1111233467899999987
Q ss_pred hCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhh----------------cCcceeEeecCCCcchhHHHH
Q 009646 191 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH----------------QKNFDLVWCRGTLREKIFEPW 254 (530)
Q Consensus 191 ~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~----------------~~~~~~~~~~gg~~~~l~~~l 254 (530)
.+++.+.+.++.+++...++.+++++++......+..+.... ........+++|+ ..+.+.+
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~l~~~l 227 (451)
T PRK11883 150 -RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGL-QSLIEAL 227 (451)
T ss_pred -hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHH-HHHHHHH
Confidence 578888999999999999999999999876543332211110 0011223455664 5677777
Q ss_pred HHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeEE
Q 009646 255 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVV 334 (530)
Q Consensus 255 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~ 334 (530)
.+.+... +|+++++|++|+.++ +.+..+..+++++.||+||+|+|+..+.+++..+ +..+.+..+.+.++.
T Consensus 228 ~~~l~~~--~i~~~~~V~~i~~~~--~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 298 (451)
T PRK11883 228 EEKLPAG--TIHKGTPVTKIDKSG--DGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVAP-----PAFALFKTIPSTSVA 298 (451)
T ss_pred HHhCcCC--eEEeCCEEEEEEEcC--CeEEEEECCCCEEEcCEEEECCCHHHHHHhccCh-----hHHHHHhCCCCCceE
Confidence 7665432 899999999999876 4443233356689999999999999999887642 234556788888889
Q ss_pred EEEEEeccCCC-CCCCCceeeccCCC--ccceeeeccccccccCCCCCeEEEEEecCC--CCCCCCCHHHHHHHHHHHHh
Q 009646 335 SVKLWFDKKVT-VPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVSYLS 409 (530)
Q Consensus 335 ~v~l~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~eei~~~~l~~L~ 409 (530)
++++.+++++. .+...+.+...+.. .....++. ...+...+.+..++...+... ......+++++++.++++|+
T Consensus 299 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 377 (451)
T PRK11883 299 TVALAFPESATNLPDGTGFLVARNSDYTITACTWTS-KKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLS 377 (451)
T ss_pred EEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEc-CcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHH
Confidence 99999998852 22222233221211 11222322 111222233344443322211 22346789999999999999
Q ss_pred HhhcCCCCCccccceEEeCCCCceecCCCCcccC----CCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHHH
Q 009646 410 KCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 485 (530)
Q Consensus 410 ~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~----~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~ 485 (530)
++|+. . ....+..+.+|.++++.+.+++.... +.... ++|||+||+|+. + .++++|+.||+++|++|++
T Consensus 378 ~~~g~-~-~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~---g-~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 378 KVMGI-T-GDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE---G-VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred HHhCC-C-CCceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC---C-ccHHHHHHHHHHHHHHHHh
Confidence 99963 2 23557778899999999988864322 22222 579999999985 2 4799999999999999975
No 13
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1e-30 Score=270.38 Aligned_cols=410 Identities=16% Similarity=0.219 Sum_probs=254.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEcCCCCCCCCcc----cccccc---------cccHHHHHHHhCCCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQ-GFDVTVLDDGNGFGSPDD----ISFWYP---------FRNIFSLVDELGIKPFT 110 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~-G~~V~vlE~~~~~GG~~~----~g~~~~---------~~~~~~~~~~lg~~~~~ 110 (530)
..++||+|||||++||+||++|+++ |++|+|||+++++||++. .|++++ ++.+..++++ |++...
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~~ 88 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GLRDDL 88 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHHc-CChhhe
Confidence 3557999999999999999999999 999999999999999943 444432 2334555555 776332
Q ss_pred Cccc--c-eeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHHH
Q 009646 111 GWMK--S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITAREL 187 (530)
Q Consensus 111 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 187 (530)
.+.. . .....++... .+|...... .....++..+++... ......... ....++.|+++|
T Consensus 89 ~~~~~~~~~~~~~~g~~~---------~~p~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~sv~~~ 151 (496)
T PLN02576 89 VFPDPQAPRYVVWNGKLR---------PLPSNPIDL--PTFDLLSAPGKIRAG---LGAFGWKRP---PPPGREESVGEF 151 (496)
T ss_pred ecCCCCceEEEEECCEEE---------EcCCChHHh--cCcCcCChhHHHHHh---HHHhhccCC---CCCCCCCcHHHH
Confidence 2111 1 1111222111 111111000 011112222222111 111111000 011357899999
Q ss_pred HHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhc-----------------------------Ccce
Q 009646 188 FKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-----------------------------KNFD 238 (530)
Q Consensus 188 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~-----------------------------~~~~ 238 (530)
+++. +++++.+.++.|++...++.+++++|+......++......+ ....
T Consensus 152 l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (496)
T PLN02576 152 VRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQT 230 (496)
T ss_pred HHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCe
Confidence 9984 889999999999999999999999999876555443211000 0011
Q ss_pred eEeecCCCcchhHHHHHHHHHhcC-CEEEcCceeeEEEecCCCCeE-EEEEEC-C-eeEecCEEEEccChhhHHHhhhhc
Q 009646 239 LVWCRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCI-SDVVCG-K-ETYSAGAVVLAVGISTLQELIKNS 314 (530)
Q Consensus 239 ~~~~~gg~~~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v-~~v~~~-~-~~~~ad~VV~a~~~~~~~~ll~~~ 314 (530)
....+||+ +.|++.|++.+ + .+|++|++|++|+..+ ++.+ +.+..+ + +++.||+||+|+|+..+..++++.
T Consensus 231 ~~~~~gG~-~~L~~~la~~l---~~~~i~l~~~V~~I~~~~-~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~ 305 (496)
T PLN02576 231 VGSFRGGL-QTLPDALAKRL---GKDKVKLNWKVLSLSKND-DGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPK 305 (496)
T ss_pred eEeccchH-HHHHHHHHHhh---CcCcEEcCCEEEEEEECC-CCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhccc
Confidence 23335554 46888887554 4 6899999999999876 3322 233332 3 369999999999999999998753
Q ss_pred cccChHHHHhhccccceeEEEEEEEeccCCCCCC-----CCceeeccCC---C---ccceeeeccccccccCCCCCeEEE
Q 009646 315 ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----VSNACSGFGD---S---LAWTFFDLNKIYDEHKDDSATVIQ 383 (530)
Q Consensus 315 ~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-----~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~ 383 (530)
+ ....+.+..+.+.++.++.+.|+++++... +...+..+.. . .++ +++ +...+...+. +..+.
T Consensus 306 ~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~-~~~-s~~~p~~~~~-~~~~l 379 (496)
T PLN02576 306 S---PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGT-IYS-SSLFPDRAPE-GRVLL 379 (496)
T ss_pred C---HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEE-Eee-cCcCCCCCCC-CCEEE
Confidence 2 234456778888899999999998765431 1111111110 0 111 222 2222222222 33333
Q ss_pred EEecC---CCCCCCCCHHHHHHHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCCC---CCC--CceEE
Q 009646 384 ADFYH---ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF---TSF--PNLFM 455 (530)
Q Consensus 384 ~~~~~---~~~~~~~~~eei~~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~---~~~--~~l~~ 455 (530)
..+.. ...+..++++++++.++++|.++++......+....+.+|++++|.+.+|+....+... ... +|||+
T Consensus 380 ~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~ 459 (496)
T PLN02576 380 LNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFL 459 (496)
T ss_pred EEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEE
Confidence 33332 24566788999999999999999974221133445577899999999998754332221 123 79999
Q ss_pred eeccccCCCCCCcchHHHHHHHHHHHHHHHHhC
Q 009646 456 AGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 488 (530)
Q Consensus 456 aG~~~~~g~~~~~iega~~sG~~aA~~il~~~~ 488 (530)
||+|+.+ .++++|+.||+++|++|++.+.
T Consensus 460 aG~~~~g----~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 460 GGNYRGG----VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred eccccCC----ccHHHHHHHHHHHHHHHHHHHh
Confidence 9999962 4799999999999999998765
No 14
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=8.6e-31 Score=266.42 Aligned_cols=394 Identities=19% Similarity=0.195 Sum_probs=226.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----ccc-------ccc----cccHHHHHHHhCCCCCCCc
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----ISF-------WYP----FRNIFSLVDELGIKPFTGW 112 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~-------~~~----~~~~~~~~~~lg~~~~~~~ 112 (530)
.+|+|||||++||+||+.|.++|++|+|||+++++|||+. .|+ +.+ ...+.++++++|++.....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 4799999999999999999999999999999999999943 232 221 2237889999999743222
Q ss_pred ccceeeccCCcccccccc-cCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHHHHHHh
Q 009646 113 MKSAQYSEEGLEVEFPIF-QDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQF 191 (530)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 191 (530)
.........+.. ..... .....++...... + ... ...+...... ......++.|+.+|++++
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~-----~~~--~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~ 143 (435)
T PLN02268 81 GDNSVLYDHDLE-SYALFDMDGNQVPQELVTK----V-----GET--FERILEETEK-----VRDEHEEDMSLLQAISIV 143 (435)
T ss_pred CCcccccccccc-ccceecCCCCCCCHHHHHH----H-----HHH--HHHHHHHHHH-----HHhccCCCcCHHHHHHHH
Confidence 111111111100 00000 0000111100000 0 000 0000001000 001124567888877553
Q ss_pred C----------CCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHHHHHhc
Q 009646 192 G----------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTR 261 (530)
Q Consensus 192 g----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~ 261 (530)
. +.+.+...++.+ +...++.+++++|...... .... . +.. ....+| ++.+++.|. +
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~---~~~~--~-g~~-~~~~~G-~~~l~~~l~----~- 209 (435)
T PLN02268 144 LERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ---EELL--E-GGH-GLMVRG-YDPVINTLA----K- 209 (435)
T ss_pred hhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC---cccc--C-CCc-eeecCC-HHHHHHHHh----c-
Confidence 1 233344444444 2344667888887743100 0000 0 001 122333 334444443 2
Q ss_pred CCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhHHHhh--hhccccChHHHHhhccccceeEEEEEE
Q 009646 262 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI--KNSILCNREEFLKVLNLASIDVVSVKL 338 (530)
Q Consensus 262 G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll--~~~~~~~~~~~~~~~~l~~~~~~~v~l 338 (530)
+++|+++++|++|...+ +.+ .|.+ +++++.||+||+|+|+..+++.. ..++++ ....+.++.+.+.+..|+.+
T Consensus 210 ~~~i~~~~~V~~i~~~~--~~v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp-~~~~~ai~~~~~g~~~Kv~l 285 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRY--NGV-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELP-EWKEEAISDLGVGIENKIAL 285 (435)
T ss_pred cCceeCCCeeEEEEEcC--CcE-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCC-HHHHHHHHhCCccceeEEEE
Confidence 67899999999999876 334 3454 45689999999999999997532 333333 23345678888888999999
Q ss_pred EeccCCCCCCCCceeeccCCC--ccceeeeccccccccCCCCCeEEEEEecC--CCCCCCCCHHHHHHHHHHHHhHhhcC
Q 009646 339 WFDKKVTVPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKD 414 (530)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~eei~~~~l~~L~~~~p~ 414 (530)
.|++++|.... +.+.... ....+++... ...+..++.+...+ +..+..++++++++.++++|.++||.
T Consensus 286 ~f~~~fw~~~~---~~g~~~~~~~~~~~~~~~~-----~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~ 357 (435)
T PLN02268 286 HFDSVFWPNVE---FLGVVAPTSYGCSYFLNLH-----KATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPD 357 (435)
T ss_pred EeCCCCCCCCc---eeeccCCCCCCceEEEecc-----cCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCC
Confidence 99999885322 2221111 1111222111 11223333322222 23355688999999999999999986
Q ss_pred CCCCccccceEEeCC------CCceecCCCCc-ccCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHHHHh
Q 009646 415 FSTATVMDHKIRRFP------KSLTHFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 487 (530)
Q Consensus 415 ~~~~~i~~~~~~~~~------~a~~~~~~g~~-~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~~~ 487 (530)
.. .+....+.+|. +++..+.||+. ...+....|+++|||||++++..++ ++||||++||++||++|++.+
T Consensus 358 ~~--~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~-g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 358 AT--EPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFP-GSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CC--CccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccc-ccHHHHHHHHHHHHHHHHHhh
Confidence 42 34444555553 22333456642 2233455788899999999998777 799999999999999999764
No 15
>PLN02529 lysine-specific histone demethylase 1
Probab=99.97 E-value=3.5e-28 Score=252.93 Aligned_cols=397 Identities=17% Similarity=0.165 Sum_probs=226.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----c--c---------ccc--cccc-HHHHHHHhCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----I--S---------FWY--PFRN-IFSLVDELGI 106 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~--g---------~~~--~~~~-~~~~~~~lg~ 106 (530)
...+||+|||||++||+||..|+++|++|+|+|+++++||++. . | .|. ...+ +..+.+++|+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl 237 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSI 237 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCC
Confidence 4567999999999999999999999999999999999999943 1 2 111 1223 6678888888
Q ss_pred CCCCCcccceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHH
Q 009646 107 KPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARE 186 (530)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 186 (530)
+..........+..+|...... ....+... ++ .. ...+...... .. ...++.|+.+
T Consensus 238 ~~~~~~~~~~~~~~~G~~v~~~-------~~~~~~~~-~~--------~~---l~~~~~l~~~--~~---~~~~d~Sl~~ 293 (738)
T PLN02529 238 PLHKVRDNCPLYKPDGALVDKE-------IDSNIEFI-FN--------KL---LDKVTELRQI--MG---GFANDISLGS 293 (738)
T ss_pred CccccCCCceEEeCCCcCcchh-------hhhhHHHH-HH--------HH---HHHHHHHHHh--cc---cCccCCCHHH
Confidence 7433222223444444221100 00000000 00 00 0000000000 00 1235678898
Q ss_pred HHHHhC------CCHHHHHHhhhhhhh---hhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHHH
Q 009646 187 LFKQFG------CSERLYRNVIGPLVQ---VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS 257 (530)
Q Consensus 187 ~l~~~g------~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~ 257 (530)
|+++.. +++. ...++.-... .....+...++... +.... ....+.+.....||+ ++|+++|++
T Consensus 294 ~le~~~~~~~~~~t~~-e~~ll~~~~~~le~a~~~~~s~LSl~~---~~~~~--~~e~~G~~~~i~GG~-~~Li~aLA~- 365 (738)
T PLN02529 294 VLERLRQLYGVARSTE-ERQLLDWHLANLEYANAGCLSDLSAAY---WDQDD--PYEMGGDHCFLAGGN-WRLINALCE- 365 (738)
T ss_pred HHHHHHhhhccCCCHH-HHHHHHHHHHHhceecCCChHHhhhhH---hhhcc--ccccCCceEEECCcH-HHHHHHHHh-
Confidence 887643 2222 1222222221 11222333333321 11100 001111223345654 567666663
Q ss_pred HHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHH--HhhhhccccChHHHHhhccccceeEEE
Q 009646 258 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLASIDVVS 335 (530)
Q Consensus 258 l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~--~ll~~~~~~~~~~~~~~~~l~~~~~~~ 335 (530)
+..|++|++|++|.+++ +.| .|.++++++.||+||+|+|+.+++ .+.+.++++ .....+++++.+.++.+
T Consensus 366 ----~L~IrLnt~V~~I~~~~--dGV-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~yG~v~K 437 (738)
T PLN02529 366 ----GVPIFYGKTVDTIKYGN--DGV-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELP-RRKLAAIDRLGFGLLNK 437 (738)
T ss_pred ----cCCEEcCCceeEEEEcC--CeE-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCCC-HHHHHHHHcCCCceeEE
Confidence 45699999999999986 333 456667789999999999999998 344555553 34456789999999999
Q ss_pred EEEEeccCCCCCCCCceeeccC----CCcc-ceeeeccccccccCCCCCeEEEEEecC--CCCCCCCCHHHHHHHHHHHH
Q 009646 336 VKLWFDKKVTVPNVSNACSGFG----DSLA-WTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYL 408 (530)
Q Consensus 336 v~l~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~eei~~~~l~~L 408 (530)
+.+.|+++||..... ++++. ...+ +..+.... ...++.++.....+ +..+..++++++++.+++.|
T Consensus 438 V~L~F~~~FW~~~~~--~fG~l~~~~~~~g~~~~~~~~~-----~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L 510 (738)
T PLN02529 438 VAMVFPSVFWGEELD--TFGCLNESSNKRGEFFLFYGYH-----TVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVL 510 (738)
T ss_pred EEEEeCCccccCCCC--ceEEEeccCCCCceEEEEecCC-----CCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHH
Confidence 999999999854321 12211 1111 21111111 11123333222222 23355688999999999999
Q ss_pred hHhhcC--CCCCccccceEEeCCC------CceecCCCCcc-cCCCCCCC-CCceEEeeccccCCCCCCcchHHHHHHHH
Q 009646 409 SKCIKD--FSTATVMDHKIRRFPK------SLTHFFPGSYK-YMMRGFTS-FPNLFMAGDWITTRHGSWSQERSYVTGLE 478 (530)
Q Consensus 409 ~~~~p~--~~~~~i~~~~~~~~~~------a~~~~~~g~~~-~~~~~~~~-~~~l~~aG~~~~~g~~~~~iega~~sG~~ 478 (530)
.++|+. ..-+.+....+.+|.. ++....++... .......| .++|||||++++.+++ ++||||++||++
T Consensus 511 ~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~p-gtVeGAi~SG~R 589 (738)
T PLN02529 511 RGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYP-ATMHGAFLSGLR 589 (738)
T ss_pred HHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCC-eEeHHHHHHHHH
Confidence 999963 1111334444445532 22223333211 11112233 4789999999999888 899999999999
Q ss_pred HHHHHHHHhCC
Q 009646 479 AANRVVDYLGD 489 (530)
Q Consensus 479 aA~~il~~~~~ 489 (530)
||++|++.+..
T Consensus 590 AA~eIl~~l~~ 600 (738)
T PLN02529 590 EASRILHVARS 600 (738)
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 16
>PLN02568 polyamine oxidase
Probab=99.97 E-value=3e-28 Score=249.14 Aligned_cols=423 Identities=16% Similarity=0.149 Sum_probs=228.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-----CeEEEEcCCCCCCCCcc----cccc-------c---ccccHHHHHHHhC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQG-----FDVTVLDDGNGFGSPDD----ISFW-------Y---PFRNIFSLVDELG 105 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G-----~~V~vlE~~~~~GG~~~----~g~~-------~---~~~~~~~~~~~lg 105 (530)
+..+||+|||||++||+||++|++.| ++|+|||+++++||++. .|+. . ....+.++++++|
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g 82 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAG 82 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhC
Confidence 34579999999999999999999887 89999999999999932 2221 1 1345778999999
Q ss_pred CCCCCC-ccc-------ceeeccCCcccccccccCCCCCCCcccchhhhhc-cCCchhhhhccchhHHHhhhccCcch--
Q 009646 106 IKPFTG-WMK-------SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQF-SRLPLVDRLTSLPLMAAVIDFDNTDV-- 174 (530)
Q Consensus 106 ~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 174 (530)
+..... +.. ...+..+|...... +...+...+ ..+ .... .+. ..+......++.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~-~~~~~~~~--~~~-~~~~~~~~~d~~~~~~~~ 151 (539)
T PLN02568 83 SLESDEPWECMDGFPDRPKTVAEGGFEVDPS-------IVESISTLF-RGLMDDAQ--GKL-IEPSEVDEVDFVKLAAKA 151 (539)
T ss_pred CccccCcceecccccccceEEccCCcCCCHH-------HHHHHHHHH-HHHHHHhh--ccc-ccccccccccccccchhc
Confidence 863221 110 11122222111100 000000000 000 0000 000 0000000000000000
Q ss_pred --hhhcccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcC-----------------
Q 009646 175 --AWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK----------------- 235 (530)
Q Consensus 175 --~~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~----------------- 235 (530)
....-...++.+++++. +.+ ....+..++....+...++.++.......+..+......
T Consensus 152 ~~~~~~~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~ 229 (539)
T PLN02568 152 ARVCESGGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRM 229 (539)
T ss_pred cchhccCCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCccee
Confidence 00000224788888762 222 334444454444444444444443333322222111000
Q ss_pred -cceeEeecCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhHHH----
Q 009646 236 -NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE---- 309 (530)
Q Consensus 236 -~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~~~---- 309 (530)
..+.....|| ++.|++.|.+.+. +.+|++|++|++|..++ +.+ .|.+ +++++.||+||+|+|+..+++
T Consensus 230 ~~g~~~~i~gG-~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~--~~v-~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~ 303 (539)
T PLN02568 230 FPGEEITIAKG-YLSVIEALASVLP--PGTIQLGRKVTRIEWQD--EPV-KLHFADGSTMTADHVIVTVSLGVLKAGIGE 303 (539)
T ss_pred cCCCeEEECCc-HHHHHHHHHhhCC--CCEEEeCCeEEEEEEeC--CeE-EEEEcCCCEEEcCEEEEcCCHHHHhhcccc
Confidence 0011223344 4567887776653 45799999999999876 444 3444 456899999999999999985
Q ss_pred --hhhhccccChHHHHhhccccceeEEEEEEEeccCCCCCCCC-c-----eeeccCCCc----cceeeeccccccccCC-
Q 009646 310 --LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS-N-----ACSGFGDSL----AWTFFDLNKIYDEHKD- 376 (530)
Q Consensus 310 --ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~-~-----~~~~~~~~~----~~~~~~~~~~~~~~~~- 376 (530)
+.++++++ ..+.++++.+.+..+.|+.+.|++++|..... . .+....... ....+....+...+..
T Consensus 304 ~~i~F~P~LP-~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (539)
T PLN02568 304 DSGLFSPPLP-DFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIH 382 (539)
T ss_pred ccceecCCCC-HHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccC
Confidence 34555554 23456789999999999999999998753211 0 000000000 0000000000000001
Q ss_pred CCCeEEEEEecCC--CCCCCCCHHHHHHHHHHHHhHhhcCCCC---------------------CccccceEEeCC----
Q 009646 377 DSATVIQADFYHA--NELMPLKDDQVVAKAVSYLSKCIKDFST---------------------ATVMDHKIRRFP---- 429 (530)
Q Consensus 377 ~~~~~~~~~~~~~--~~~~~~~~eei~~~~l~~L~~~~p~~~~---------------------~~i~~~~~~~~~---- 429 (530)
.+..++...+.+. ..+..++++++++.+++.|.++|+.-.. ..+......+|.
T Consensus 383 ~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~ 462 (539)
T PLN02568 383 KNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPL 462 (539)
T ss_pred CCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCc
Confidence 1233443333332 3355788999999999999999963211 123334344442
Q ss_pred --CCceecCCCCcc-cCCCCCCCC-------------CceEEeeccccCCCCCCcchHHHHHHHHHHHHHHHHhC
Q 009646 430 --KSLTHFFPGSYK-YMMRGFTSF-------------PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 488 (530)
Q Consensus 430 --~a~~~~~~g~~~-~~~~~~~~~-------------~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~~~~ 488 (530)
+++....||... .......|+ ++|||||++++..++ ++|+||++||+++|++|++..+
T Consensus 463 ~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~-~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 463 FLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHY-STTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred cCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCcc-chHHHHHHHHHHHHHHHHHHhc
Confidence 233333456532 111223333 379999999998888 7999999999999999998764
No 17
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.97 E-value=3.3e-28 Score=250.98 Aligned_cols=418 Identities=18% Similarity=0.202 Sum_probs=235.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----cccccc-----------cccHHHHHHHhCCCCC--C
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----ISFWYP-----------FRNIFSLVDELGIKPF--T 110 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~~~~-----------~~~~~~~~~~lg~~~~--~ 110 (530)
.||||||||++||+||..|+++|++|+|||+++++||+.. .||.++ ...+..+++++|+... .
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 6899999999999999999999999999999999999933 455432 1225577889998722 1
Q ss_pred Ccccc-eeeccCC-cccccccccCCC--------CCCCcccchhhhhcc--------------CCchhhhhccchhHHHh
Q 009646 111 GWMKS-AQYSEEG-LEVEFPIFQDLN--------QLPTPLGTLFYTQFS--------------RLPLVDRLTSLPLMAAV 166 (530)
Q Consensus 111 ~~~~~-~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 166 (530)
..+.. ..+..++ ..+. ++.+.. ..|.... ++.... .++.... .......
T Consensus 82 ~~d~~~~~~~~dg~~~~~--~~~d~~~~~~~l~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 154 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIP--LWHDPDRWQKERERQFPGSER--FWQLCSQLHQSNWRFAGRDPVLPPRNY---WDLLQLV 154 (492)
T ss_pred cCCCCcEEEECCCceEee--eecCHHHHHHHHHHHCCChHH--HHHHHHHHHHHHHHHhhcCCCCCCCCH---HHHHHHH
Confidence 11211 2223333 1111 000000 0011000 000000 0000000 0000000
Q ss_pred hhccCcchhhhcccCccHHHHHHHhC-CCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCC
Q 009646 167 IDFDNTDVAWRKYDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGT 245 (530)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg 245 (530)
............+...++.+|+++.+ +.++.++.++........+.++++.++......+... . ......+++||
T Consensus 155 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~G~~~~~GG 230 (492)
T TIGR02733 155 SALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA-Q---APHGLWHLHGS 230 (492)
T ss_pred HhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc-c---cCCCceeecCc
Confidence 00000000111234578999999865 4455566666554433444556666665432222211 1 11223567787
Q ss_pred CcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CC-----eeEecCEEEEccChhhHHHhhhhccccCh
Q 009646 246 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-----ETYSAGAVVLAVGISTLQELIKNSILCNR 319 (530)
Q Consensus 246 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~-----~~~~ad~VV~a~~~~~~~~ll~~~~~~~~ 319 (530)
+ +.|+++|++.++++|++|+++++|++|..++ +++..|.. ++ +++.||+||+|+++..+.+++++...+ .
T Consensus 231 ~-~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~-~ 306 (492)
T TIGR02733 231 M-QTLSDRLVEALKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLP-P 306 (492)
T ss_pred H-HHHHHHHHHHHHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCC-H
Confidence 5 5799999999999999999999999999886 55444443 33 578999999999999999888754332 1
Q ss_pred HHHHhhcccccee-EEEEEEEeccCC-CCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEec-CCCCCC---
Q 009646 320 EEFLKVLNLASID-VVSVKLWFDKKV-TVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY-HANELM--- 393 (530)
Q Consensus 320 ~~~~~~~~l~~~~-~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 393 (530)
...+.+..+.+.+ .+.+++.+++.. ...........++. ....++.....++...+++++++.+... ...+|.
T Consensus 307 ~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~ 385 (492)
T TIGR02733 307 GYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH-QGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLD 385 (492)
T ss_pred HHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC-CceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCC
Confidence 2333455565544 457889998743 11111111111221 1222332233344556666666543322 212221
Q ss_pred ----CCCHHHHHHHHHHHHhHhhcCCCCCccccceEE----------eCCCCceecC--CCCc-ccCCCCCCCCCceEEe
Q 009646 394 ----PLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIR----------RFPKSLTHFF--PGSY-KYMMRGFTSFPNLFMA 456 (530)
Q Consensus 394 ----~~~~eei~~~~l~~L~~~~p~~~~~~i~~~~~~----------~~~~a~~~~~--~g~~-~~~~~~~~~~~~l~~a 456 (530)
...++++.+.+++.+++.+|++++ .+....+. ...++.+... ..+. ..++..+++++|||+|
T Consensus 386 ~~~y~~~k~~~~~~il~~le~~~p~l~~-~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~ 464 (492)
T TIGR02733 386 EEDYTAKKKQYTQTIIERLGHYFDLLEE-NWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLC 464 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccc-cEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEe
Confidence 122456888999999999999864 44443332 1122222221 1221 1223346799999999
Q ss_pred eccccCCCCCCcchHHHHHHHHHHHHHHH
Q 009646 457 GDWITTRHGSWSQERSYVTGLEAANRVVD 485 (530)
Q Consensus 457 G~~~~~g~~~~~iega~~sG~~aA~~il~ 485 (530)
|+++++|. ++.+++.||+.+|+.|++
T Consensus 465 G~~~~pG~---Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 465 GDSIHPGE---GTAGVSYSALMVVRQILA 490 (492)
T ss_pred cCccCCCC---cHHHHHHHHHHHHHHHhh
Confidence 99998753 589999999999999985
No 18
>PLN02676 polyamine oxidase
Probab=99.97 E-value=1.5e-28 Score=250.01 Aligned_cols=405 Identities=14% Similarity=0.188 Sum_probs=228.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCCCCCcc----ccc-------cc------ccccHHHHHHHhCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGNGFGSPDD----ISF-------WY------PFRNIFSLVDELGIK 107 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~~~~GG~~~----~g~-------~~------~~~~~~~~~~~lg~~ 107 (530)
..+||+|||||++||+||++|+++|. +|+|+|+++++||++. .|+ +. ....+.++++++|+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~ 104 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLR 104 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCc
Confidence 45799999999999999999999998 6999999999999943 222 22 124477888899987
Q ss_pred CCCC-ccc--ceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccH
Q 009646 108 PFTG-WMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITA 184 (530)
Q Consensus 108 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 184 (530)
.... +.. ...+..++... +... ...+. .....+......... . ......++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~g~~~-----------~~~~----~~~~~-----~~~~~~~~~~~~~~~--~-~~~~~~~~~s~ 161 (487)
T PLN02676 105 TFYSDFDNLSSNIYKQDGGLY-----------PKKV----VQKSM-----KVADASDEFGENLSI--S-LSAKKAVDISI 161 (487)
T ss_pred eeecCccccceeEECCCCCCC-----------CHHH----HHHHH-----HHHHHHHHHHHHHHH--h-hcccCCCCccH
Confidence 4322 221 11222222111 0000 00000 000000000000000 0 00011234444
Q ss_pred --HHHHHHhC-CCHHHHHHhhhhhhh-hhcCCCchhchHHHHHHHHHHHHHhhcCcceeEee-cCCCcchhHHHHHHHHH
Q 009646 185 --RELFKQFG-CSERLYRNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC-RGTLREKIFEPWMDSMR 259 (530)
Q Consensus 185 --~~~l~~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~-~gg~~~~l~~~l~~~l~ 259 (530)
.+++.... ... .......+.. ..++.+++++|...+... .. ....++....+. ++| ++.|.+.|.+.+.
T Consensus 162 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~S~~~~~~~-~~--~~~~g~~~~~~~~~~G-~~~l~~~La~~~~ 235 (487)
T PLN02676 162 LTAQRLFGQVPKTP--LEMVIDYYNYDYEFAEPPRVTSLKNTEPN-PT--FVDFGEDEYFVADPRG-YESLVYYLAEQFL 235 (487)
T ss_pred HHHHHHHhhCCCCH--HHHHHHHHhccceeccCccccchhhcCcc-cc--cccCCCceEEeecCCC-HHHHHHHHHhhcc
Confidence 23333221 111 1111111111 124556667666432110 00 011111222222 344 5678888887664
Q ss_pred hc------CCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccChhhHHH--hhhhccccChHHHHhhccccc
Q 009646 260 TR------GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLAS 330 (530)
Q Consensus 260 ~~------G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~~~~~~--ll~~~~~~~~~~~~~~~~l~~ 330 (530)
+. +.+|++|++|++|..++ +.| .|.+. |+++.||+||+|+|+..+++ +.++++++ ....+.++.+.+
T Consensus 236 ~~~~~~~~~~~I~l~~~V~~I~~~~--~gV-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP-~~k~~ai~~l~~ 311 (487)
T PLN02676 236 STKSGKITDPRLKLNKVVREISYSK--NGV-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP-DWKIEAIYQFDM 311 (487)
T ss_pred cccccccCCCceecCCEeeEEEEcC--CcE-EEEECCCCEEEeCEEEEccChHHhccCceEEeCCCC-HHHHHHHHhCCc
Confidence 32 36899999999999886 334 45555 55899999999999999986 66666554 234456888999
Q ss_pred eeEEEEEEEeccCCCCCCCCceeeccCC-Cccc-eeeeccccccccCCCCCeEEEEEecCC--CCCCCCCHHHHHHHHHH
Q 009646 331 IDVVSVKLWFDKKVTVPNVSNACSGFGD-SLAW-TFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVS 406 (530)
Q Consensus 331 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~eei~~~~l~ 406 (530)
..+.|+.+.|+++||.......+..... ..+. .++. . .... .++..++.+.+.+. ..+..+++++..+.+++
T Consensus 312 g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~ 387 (487)
T PLN02676 312 AVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQ-H-LENE--YPGSNVLFVTVTDEESRRIEQQPDSETKAEIME 387 (487)
T ss_pred eeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhh-h-cccC--CCCCCEEEEEechHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999986432211111111 0000 0010 0 0000 11223433333221 33556889999999999
Q ss_pred HHhHhhcCCCCCccccceEEeC------CCCceecCCCCcc-cCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHH
Q 009646 407 YLSKCIKDFSTATVMDHKIRRF------PKSLTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEA 479 (530)
Q Consensus 407 ~L~~~~p~~~~~~i~~~~~~~~------~~a~~~~~~g~~~-~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~a 479 (530)
.|.++||.-. ..+.......| .+++..+.||... .......|+++|||||++++..++ ++||||+.||++|
T Consensus 388 ~L~~~~g~~~-~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~-g~~eGA~~SG~Ra 465 (487)
T PLN02676 388 VLRKMFGPNI-PEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYN-GYVHGAYLAGIDT 465 (487)
T ss_pred HHHHHhCCCC-CCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccc-cchHHHHHHHHHH
Confidence 9999996321 12333333334 2334445566532 233445688999999999998777 7999999999999
Q ss_pred HHHHHHHhCC
Q 009646 480 ANRVVDYLGD 489 (530)
Q Consensus 480 A~~il~~~~~ 489 (530)
|++|++.++.
T Consensus 466 A~~I~~~l~~ 475 (487)
T PLN02676 466 ANDLLECIKK 475 (487)
T ss_pred HHHHHHHhcc
Confidence 9999999874
No 19
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.97 E-value=3.2e-28 Score=231.51 Aligned_cols=230 Identities=14% Similarity=0.091 Sum_probs=156.3
Q ss_pred CCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECC-eeEecCEEEEccChhhHHHhhhhccccChHHH
Q 009646 244 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNREEF 322 (530)
Q Consensus 244 gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~-~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~ 322 (530)
|| ++.|.+++. .+.|-.|+++.+|.+|.+++ +| +.|++.+ +++.+|.+|+|+|+..+.++-.++.++ ....
T Consensus 206 GG-md~la~Afa---~ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~-~~~~ 277 (450)
T COG1231 206 GG-MDQLAEAFA---KQLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLP-AEYK 277 (450)
T ss_pred cc-HHHHHHHHH---HHhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEEecCHHHHhhcccCCCCC-HHHH
Confidence 55 466777777 45577999999999999987 34 3567776 899999999999999999998886433 3444
Q ss_pred HhhccccceeEEEEEEEeccCCCCCCC-CceeeccCCCccceeeeccccccccCCCCCeEEEEEec--C--CCCCCCCCH
Q 009646 323 LKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--H--ANELMPLKD 397 (530)
Q Consensus 323 ~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~ 397 (530)
..+..+.+.+..++.+.|+++||.... .+...-.+.......++.. ....+..+.+.+| . +-.+..+++
T Consensus 278 ~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~------~~~~G~gVl~g~~~~g~~A~~~~~~~~ 351 (450)
T COG1231 278 QAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSA------PFADGPGVLLGSYAFGDDALVIDALPE 351 (450)
T ss_pred HHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEecCcc------ccCCCceEEEeeeeccccceeEecCCH
Confidence 556778888999999999999997655 2111111222211122211 1123443333322 2 234667899
Q ss_pred HHHHHHHHHHHhHhhcCCCCCccccceEEeC-----CCC-ceecCCCCcc-cCCCCCCCCCceEEeeccccCCCCCCcch
Q 009646 398 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRF-----PKS-LTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQE 470 (530)
Q Consensus 398 eei~~~~l~~L~~~~p~~~~~~i~~~~~~~~-----~~a-~~~~~~g~~~-~~~~~~~~~~~l~~aG~~~~~g~~~~~ie 470 (530)
++.++.++..+.++||+.....+.....++| ..+ +..+.||+.. .-+....+.++|+|||....+.++ +++|
T Consensus 352 ~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~-Gw~e 430 (450)
T COG1231 352 AERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFG-GWLE 430 (450)
T ss_pred HHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeeccccccc-chhH
Confidence 9999999999999999644333333233333 222 4456677643 234455688999999944444677 7999
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 009646 471 RSYVTGLEAANRVVDYLG 488 (530)
Q Consensus 471 ga~~sG~~aA~~il~~~~ 488 (530)
||++||++||.+|.+.+.
T Consensus 431 GAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 431 GAIRSGQRAAAEIHALLS 448 (450)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999998765
No 20
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.96 E-value=2.2e-27 Score=247.89 Aligned_cols=398 Identities=16% Similarity=0.144 Sum_probs=223.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----ccc-----------cc--cc-ccHHHHHHHh
Q 009646 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----ISF-----------WY--PF-RNIFSLVDEL 104 (530)
Q Consensus 43 ~~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~-----------~~--~~-~~~~~~~~~l 104 (530)
+....++|+|||||++||+||+.|++.|++|+|+|+++++||++. .|+ +. .. ..+..+++++
T Consensus 234 ~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~l 313 (808)
T PLN02328 234 EGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQL 313 (808)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHc
Confidence 345668999999999999999999999999999999999999943 221 11 11 2366788899
Q ss_pred CCCCCCCcccceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccH
Q 009646 105 GIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITA 184 (530)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 184 (530)
|++..........+..+|..... .++...... ++.+ .+.. ....... . ....-.+.++
T Consensus 314 gl~~~~~~~~~~~~~~dG~~~~~-------~~~~~v~~~-f~~l-----L~~~---~klr~~~-----~-~~~~~~D~SL 371 (808)
T PLN02328 314 GLPLHKVRDICPLYLPDGKAVDA-------EIDSKIEAS-FNKL-----LDRV---CKLRQAM-----I-EEVKSVDVNL 371 (808)
T ss_pred CCceEecCCCceEEeCCCcCcch-------hhhhhHHHH-HHHH-----HHHH---HHHHHhh-----h-hcccccCcCH
Confidence 98733222222233333322110 000000000 0000 0000 0000000 0 0001124577
Q ss_pred HHHHHHh----C--CCHHHHHHhhhhhhhh---hcCCCchhchHHHHHHHHHHHHHh--hcCcceeEeecCCCcchhHHH
Q 009646 185 RELFKQF----G--CSERLYRNVIGPLVQV---GLFAPAEQCSAAATLGILYFIILA--HQKNFDLVWCRGTLREKIFEP 253 (530)
Q Consensus 185 ~~~l~~~----g--~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~l~~~~~~--~~~~~~~~~~~gg~~~~l~~~ 253 (530)
.++++++ + .++. ...++...+.. ..+.....++.. .+... .....+.....|| ++.|+++
T Consensus 372 g~~le~~~~~~~~~~~~~-e~~Ll~w~lanlE~~~gs~ls~LSl~-------~w~qd~~~e~~G~~~~v~GG-~~~Li~a 442 (808)
T PLN02328 372 GTALEAFRHVYKVAEDPQ-ERMLLNWHLANLEYANASLMSNLSMA-------YWDQDDPYEMGGDHCFIPGG-NDTFVRE 442 (808)
T ss_pred HHHHHHHhhhhccCCCHH-HHHHHHHHHHHHhccchhhHHHHHhh-------hhhccccccCCCeEEEECCc-HHHHHHH
Confidence 7777642 1 1111 11222222111 111111222210 01000 0001122334455 4578887
Q ss_pred HHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHH--hhhhccccChHHHHhhccccce
Q 009646 254 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLASI 331 (530)
Q Consensus 254 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~--ll~~~~~~~~~~~~~~~~l~~~ 331 (530)
|++.+ .|++|++|++|.+.+ ++ + .|..+++++.||+||+|+|+.++++ +.+.++++ .....+++.+.+.
T Consensus 443 La~~L-----~I~ln~~V~~I~~~~-dg-V-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP-~~K~~AI~~l~yG 513 (808)
T PLN02328 443 LAKDL-----PIFYERTVESIRYGV-DG-V-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELP-QRKKDAIQRLGYG 513 (808)
T ss_pred HHhhC-----CcccCCeeEEEEEcC-Ce-E-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCC-HHHHHHHHcCCCc
Confidence 77543 489999999999976 34 3 3456677999999999999999983 44444443 3445678999999
Q ss_pred eEEEEEEEeccCCCCCCCCceeeccC---C-Ccc-ceeeeccccccccCC-CCCeEEEEEecCC--CCCCCCCHHHHHHH
Q 009646 332 DVVSVKLWFDKKVTVPNVSNACSGFG---D-SLA-WTFFDLNKIYDEHKD-DSATVIQADFYHA--NELMPLKDDQVVAK 403 (530)
Q Consensus 332 ~~~~v~l~~~~~~~~~~~~~~~~~~~---~-~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~eei~~~ 403 (530)
.+.|+.+.|++++|..... .++.. . ..+ +..+.. +.. .++.++.....+. ..+..++++++++.
T Consensus 514 ~~~KV~L~F~~~FW~~~~d--~fG~l~~d~s~rG~~~lf~s------~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~ 585 (808)
T PLN02328 514 LLNKVALLFPYNFWGGEID--TFGHLTEDPSMRGEFFLFYS------YSSVSGGPLLIALVAGDAAVKFETLSPVESVKR 585 (808)
T ss_pred ceEEEEEEeCCccccCCCC--ceEEEeecCCCCceEEEEec------CCCCCCCcEEEEEecChhhHHHhcCCHHHHHHH
Confidence 9999999999999854321 11111 1 111 111111 111 2333333222221 33556789999999
Q ss_pred HHHHHhHhhcC--CCCCccccceEEeCCC------CceecCCCCcc-cCCCCCCC--CCceEEeeccccCCCCCCcchHH
Q 009646 404 AVSYLSKCIKD--FSTATVMDHKIRRFPK------SLTHFFPGSYK-YMMRGFTS--FPNLFMAGDWITTRHGSWSQERS 472 (530)
Q Consensus 404 ~l~~L~~~~p~--~~~~~i~~~~~~~~~~------a~~~~~~g~~~-~~~~~~~~--~~~l~~aG~~~~~g~~~~~iega 472 (530)
+++.|.++|+. .....+....+.+|.. ++..+.+|+.. ..+....+ .++|||||++++..++ ++||||
T Consensus 586 vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~-GtVhGA 664 (808)
T PLN02328 586 VLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYP-ATMHGA 664 (808)
T ss_pred HHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCC-eEhHHH
Confidence 99999999963 1112344555566642 23334455432 12222334 3589999999998777 799999
Q ss_pred HHHHHHHHHHHHHHhCC
Q 009646 473 YVTGLEAANRVVDYLGD 489 (530)
Q Consensus 473 ~~sG~~aA~~il~~~~~ 489 (530)
++||+++|++|++.++.
T Consensus 665 i~SGlRAA~eIl~~~~~ 681 (808)
T PLN02328 665 FLSGMREAANILRVARR 681 (808)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998874
No 21
>PLN03000 amine oxidase
Probab=99.96 E-value=1.3e-27 Score=249.10 Aligned_cols=395 Identities=17% Similarity=0.181 Sum_probs=221.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----c----cccc---------cccc-HHHHHHHhCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----I----SFWY---------PFRN-IFSLVDELGIK 107 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~----g~~~---------~~~~-~~~~~~~lg~~ 107 (530)
...+|+|||||++||+||+.|++.|++|+|+|+++++||++. . ++.. ...+ +..+++++|++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~ 262 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSS 262 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCc
Confidence 457999999999999999999999999999999999999943 1 1111 1222 55567899987
Q ss_pred CCCCcccceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHHH
Q 009646 108 PFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITAREL 187 (530)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 187 (530)
..........+..+|...... +....... ++. +.+.. ..+....+.. ..+.++.++
T Consensus 263 l~~~~~~~~ly~~~Gk~v~~~-------~~~~ve~~-fn~-----lLd~~---~~lr~l~~~~--------~~D~SLg~a 318 (881)
T PLN03000 263 LYKVRDKCPLYRVDGKPVDPD-------VDLKVEVA-FNQ-----LLDKA---SKLRQLMGDV--------SMDVSLGAA 318 (881)
T ss_pred eeecCCCCeEEEeCCcCCchh-------hhhhHHHH-HHH-----HHHHH---HHHHHHhccc--------CcCCcHHHH
Confidence 433222333444444221100 00000000 000 00000 0000000000 012233332
Q ss_pred HHHh------CCCHHHHHHhhhhhhhh---hcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHHHH
Q 009646 188 FKQF------GCSERLYRNVIGPLVQV---GLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 258 (530)
Q Consensus 188 l~~~------g~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l 258 (530)
++.+ .+.+.. ..++...+.. ..+.....++.. .+..........+.....|| ++.|+++|++.+
T Consensus 319 Le~~~~~~g~~~t~e~-~~Ll~w~lanLE~~~as~ls~LSl~-----~wdqd~~~e~~G~~~~v~GG-~~~LieaLa~~L 391 (881)
T PLN03000 319 LETFRQVSGNDVATEE-MGLFNWHLANLEYANAGLVSKLSLA-----FWDQDDPYDMGGDHCFLPGG-NGRLVQALAENV 391 (881)
T ss_pred HHHHHHHHcccCCHHH-HHHHHHHHHHHhcccccCHHHHHHH-----HhhhcccccCCCceEEeCCC-HHHHHHHHHhhC
Confidence 2211 122211 1111111111 111122222211 11100000011122234455 467888887554
Q ss_pred HhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHH--HhhhhccccChHHHHhhccccceeEEEE
Q 009646 259 RTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLASIDVVSV 336 (530)
Q Consensus 259 ~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~--~ll~~~~~~~~~~~~~~~~l~~~~~~~v 336 (530)
.|+++++|++|.+++ +.+ .|.++++++.||+||+|+|+.+++ .+.+.++++ ....+++..+.+..+.|+
T Consensus 392 -----~I~Ln~~Vt~I~~~~--dgV-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~~G~l~KV 462 (881)
T PLN03000 392 -----PILYEKTVQTIRYGS--NGV-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELP-QRKLDCIKRLGFGLLNKV 462 (881)
T ss_pred -----CcccCCcEEEEEECC--CeE-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCC-HHHHHHHHcCCCcceEEE
Confidence 499999999999876 333 456666789999999999999998 556655554 234567899999999999
Q ss_pred EEEeccCCCCCCCCceeeccC----C-CccceeeeccccccccCC-CCCeEEEEEecC--CCCCCCCCHHHHHHHHHHHH
Q 009646 337 KLWFDKKVTVPNVSNACSGFG----D-SLAWTFFDLNKIYDEHKD-DSATVIQADFYH--ANELMPLKDDQVVAKAVSYL 408 (530)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~eei~~~~l~~L 408 (530)
.+.|+++||..... ++|.. . ...+..+.. +.+ .++.++.....+ +..+..++++++++.++++|
T Consensus 463 iL~Fd~~FW~~d~~--~FG~l~~~~~~rg~~~~f~s------~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~L 534 (881)
T PLN03000 463 AMLFPYVFWSTDLD--TFGHLTEDPNYRGEFFLFYS------YAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHIL 534 (881)
T ss_pred EEEeCCccccCCCC--ceeEEecCCCCCceeEEEeC------CCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHH
Confidence 99999999865422 12211 0 111111211 112 233333322222 23466789999999999999
Q ss_pred hHhhcC--CCCCccccceEEeCC------CCceecCCCCcc-cCCCCCCCC--CceEEeeccccCCCCCCcchHHHHHHH
Q 009646 409 SKCIKD--FSTATVMDHKIRRFP------KSLTHFFPGSYK-YMMRGFTSF--PNLFMAGDWITTRHGSWSQERSYVTGL 477 (530)
Q Consensus 409 ~~~~p~--~~~~~i~~~~~~~~~------~a~~~~~~g~~~-~~~~~~~~~--~~l~~aG~~~~~g~~~~~iega~~sG~ 477 (530)
.++|+. ..-..+....+.+|. +++..+.||+.. .......|+ ++|||||++++..++ ++||||++||+
T Consensus 535 rkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~-GTVhGAieSGl 613 (881)
T PLN03000 535 RGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYP-ATMHGAFVTGL 613 (881)
T ss_pred HHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCC-eeHHHHHHHHH
Confidence 999962 211233444555552 233344566432 222233453 589999999998888 89999999999
Q ss_pred HHHHHHHHHhCC
Q 009646 478 EAANRVVDYLGD 489 (530)
Q Consensus 478 ~aA~~il~~~~~ 489 (530)
+||++|++.++.
T Consensus 614 RAA~eIl~~l~~ 625 (881)
T PLN03000 614 REAANMAQSAKA 625 (881)
T ss_pred HHHHHHHHHhhh
Confidence 999999998875
No 22
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.96 E-value=9.6e-27 Score=240.86 Aligned_cols=421 Identities=13% Similarity=0.072 Sum_probs=229.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----cccccc-------c-ccHHHHHHHhCCCC--CCCcc--
Q 009646 50 IVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----ISFWYP-------F-RNIFSLVDELGIKP--FTGWM-- 113 (530)
Q Consensus 50 VvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~~~~-------~-~~~~~~~~~lg~~~--~~~~~-- 113 (530)
|||||||++||+||.+|+++|++|+|||+++++||+.. .||.++ . ..+.++++++|++. ...+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~ 80 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPL 80 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEccccHHHHHHHHcCCChhheEEEEEC
Confidence 69999999999999999999999999999999999933 455432 2 22456778887531 11111
Q ss_pred -cc-eeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHH-----hh--hccC------c--chhh
Q 009646 114 -KS-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAA-----VI--DFDN------T--DVAW 176 (530)
Q Consensus 114 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~------~--~~~~ 176 (530)
.. ..+..++..... ..+...+...+....-.+... +............ .. .+.. . ...+
T Consensus 81 ~~~~~~~~~~g~~~~~--~~~~~~~~~~l~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (502)
T TIGR02734 81 DPFYRLCWEDGSQLDV--DNDQEELEAQIARFNPGDVAG--YRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLL 156 (502)
T ss_pred CCceEEECCCCCEEEe--cCCHHHHHHHHHHhCcccHHH--HHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhh
Confidence 11 111222221110 000000000000000000000 0000000000000 00 0000 0 0111
Q ss_pred hcccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHH
Q 009646 177 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD 256 (530)
Q Consensus 177 ~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~ 256 (530)
......++.+|+++. +.++.++.++.. ....++.++.+.+....+- ..... .....++.||+ ..++++|.+
T Consensus 157 ~~~~~~s~~~~~~~~-~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l~--~~~~~----~~g~~~~~gG~-~~l~~al~~ 227 (502)
T TIGR02734 157 ALLAWRSLYSKVARF-FSDERLRQAFSF-HALFLGGNPFRTPSIYALI--SALER----EWGVWFPRGGT-GALVAAMAK 227 (502)
T ss_pred hccCcCCHHHHHHhh-cCCHHHHHHhcc-cceeeccCcccchHHHHHH--HHHHh----hceEEEcCCCH-HHHHHHHHH
Confidence 223457888999875 455555555542 2234445666666543221 11111 12334677774 679999999
Q ss_pred HHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccChhhHH-HhhhhccccChHHHHhhcccc-ceeE
Q 009646 257 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLA-SIDV 333 (530)
Q Consensus 257 ~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~~~~~-~ll~~~~~~~~~~~~~~~~l~-~~~~ 333 (530)
.++++|++|+++++|++|..++ ++++.|.++ ++++.||.||+|++...+. .|++....+ ....+.+..+. ..+.
T Consensus 228 ~~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~s~ 304 (502)
T TIGR02734 228 LAEDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR-RYPAARLSRKRPSPSL 304 (502)
T ss_pred HHHHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc-cccccccccCCcCCee
Confidence 9999999999999999999876 666777776 4589999999999987765 455433211 11112233443 3456
Q ss_pred EEEEEEec---cCCCCCCCCceeeccCC-------------C-ccceeeec-cccccccCCCCCeEEEEEec-CCC----
Q 009646 334 VSVKLWFD---KKVTVPNVSNACSGFGD-------------S-LAWTFFDL-NKIYDEHKDDSATVIQADFY-HAN---- 390 (530)
Q Consensus 334 ~~v~l~~~---~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~---- 390 (530)
+++++.++ +++.....+.++...+. + ..+.++.. +..++..++++.+.+.+... +.+
T Consensus 305 ~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~ 384 (502)
T TIGR02734 305 FVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTAD 384 (502)
T ss_pred eEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCC
Confidence 77888888 34321112233321110 0 11112211 23344556666655433222 211
Q ss_pred -CCCCCCHHHHHHHHHHHHhHh-hcCCCCCccccceEE----------eCCCCceecCC--CC-cccCCC-CCCCCCceE
Q 009646 391 -ELMPLKDDQVVAKAVSYLSKC-IKDFSTATVMDHKIR----------RFPKSLTHFFP--GS-YKYMMR-GFTSFPNLF 454 (530)
Q Consensus 391 -~~~~~~~eei~~~~l~~L~~~-~p~~~~~~i~~~~~~----------~~~~a~~~~~~--g~-~~~~~~-~~~~~~~l~ 454 (530)
.|. ..++++.+.+++.|++. +|++++ .+....+. .+.++.+...+ .+ ...+|. ..++++|||
T Consensus 385 ~~~~-~~k~~~~~~il~~l~~~~~p~l~~-~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLy 462 (502)
T TIGR02734 385 VDWS-VEGPRYRDRILAYLEERAIPGLRD-RIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLY 462 (502)
T ss_pred CCcH-HHHHHHHHHHHHHHHHhcCCChhH-heEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEE
Confidence 122 23567899999999998 999864 44443332 12233332221 11 123443 357899999
Q ss_pred EeeccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCC
Q 009646 455 MAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS 491 (530)
Q Consensus 455 ~aG~~~~~g~~~~~iega~~sG~~aA~~il~~~~~~~ 491 (530)
+||+++++|. ++.+++.||+.||+.|++..+.+.
T Consensus 463 l~G~~~~pG~---Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 463 LVGAGTHPGA---GVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred EeCCCCCCCC---CHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999998754 589999999999999999877443
No 23
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=8.7e-27 Score=233.77 Aligned_cols=216 Identities=23% Similarity=0.256 Sum_probs=145.4
Q ss_pred CCEEEcCceeeEEEecCCCCeE-EEEEECCeeEecCEEEEccChhhHHH--hhhhccccChHHHHhhccccceeEEEEEE
Q 009646 262 GCEFLDGRRVTDFIYDEERCCI-SDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLASIDVVSVKL 338 (530)
Q Consensus 262 G~~i~~~~~V~~I~~~~~~g~v-~~v~~~~~~~~ad~VV~a~~~~~~~~--ll~~~~~~~~~~~~~~~~l~~~~~~~v~l 338 (530)
|.+|++++.|.+|.+.+ ++.+ +.+.+ +..+.+|.||+|+|..++.. +.+.++++ ....+++++++.....++.+
T Consensus 228 ~l~I~~~~~v~~i~~~~-~~~~~~~~~~-~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp-~~k~~aI~~lg~g~~~Kv~l 304 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGD-DGAVKVTVET-GDGYEADAVVVTVPLGVLKSGLIEFSPPLP-RWKQEAIDRLGFGLVNKVIL 304 (501)
T ss_pred CcceeeceeeEEEEEec-CCceEEEEEC-CCeeEeeEEEEEccHHHhccCceeeCCCCc-HHHHHHHHhcCCCceeEEEE
Confidence 89999999999999987 4532 22333 33499999999999999986 55555554 34556799999999999999
Q ss_pred EeccCCCCCCCCceeeccC-CCc--cc--eeeeccccccccCCCCCeEEEEEecC--CCCCCCCCHHHHHHHHHHHHhHh
Q 009646 339 WFDKKVTVPNVSNACSGFG-DSL--AW--TFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKC 411 (530)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~eei~~~~l~~L~~~ 411 (530)
.|++.+|.+... +++.. ... .+ .+++.... .+..++...... ++.+..+++++++..++..|.++
T Consensus 305 ~F~~~fW~~~~d--~fg~~~~~~~~~~~~~f~~~~~~------~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~ 376 (501)
T KOG0029|consen 305 EFPRVFWDQDID--FFGIVPETSVLRGLFTFYDCKPV------AGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKV 376 (501)
T ss_pred EeccccCCCCcC--eEEEccccccccchhhhhhcCcc------CCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999963322 22211 111 11 11221111 122222222222 34567889999999999999999
Q ss_pred hcCCCCCccccceEEeCCC------CceecCCCCcccC-CCCCCCCCc-eEEeeccccCCCCCCcchHHHHHHHHHHHHH
Q 009646 412 IKDFSTATVMDHKIRRFPK------SLTHFFPGSYKYM-MRGFTSFPN-LFMAGDWITTRHGSWSQERSYVTGLEAANRV 483 (530)
Q Consensus 412 ~p~~~~~~i~~~~~~~~~~------a~~~~~~g~~~~~-~~~~~~~~~-l~~aG~~~~~g~~~~~iega~~sG~~aA~~i 483 (530)
|+........+..+.+|.. +++...++..... .....++.+ +||||+++...++ ++|+||+.||.++|..|
T Consensus 377 f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~-~tm~GA~~sG~~~a~~i 455 (501)
T KOG0029|consen 377 FGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYP-GTMHGAYLSGLRAASDI 455 (501)
T ss_pred hccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCC-CchHHHHHhhHHHHHHH
Confidence 9943333456666666632 2222223321111 223456777 9999999999888 89999999999999999
Q ss_pred HHHhCC
Q 009646 484 VDYLGD 489 (530)
Q Consensus 484 l~~~~~ 489 (530)
+..+..
T Consensus 456 ~~~~~~ 461 (501)
T KOG0029|consen 456 LDSLIE 461 (501)
T ss_pred HHHHHh
Confidence 999883
No 24
>PLN02976 amine oxidase
Probab=99.95 E-value=1.1e-25 Score=240.41 Aligned_cols=235 Identities=18% Similarity=0.163 Sum_probs=154.2
Q ss_pred ecCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCC--------CCeEEEEEEC-CeeEecCEEEEccChhhHH--Hh
Q 009646 242 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--------RCCISDVVCG-KETYSAGAVVLAVGISTLQ--EL 310 (530)
Q Consensus 242 ~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--------~g~v~~v~~~-~~~~~ad~VV~a~~~~~~~--~l 310 (530)
..|| ++.|++.|++. ..|++|++|++|.+.+. ++.| .|.+. |+++.||+||+|+|+.+++ .+
T Consensus 931 IkGG-YqqLIeALAe~-----L~IrLNtpVtrId~s~~d~~~~~s~~dGV-tVtTsDGetftADaVIVTVPLGVLKag~I 1003 (1713)
T PLN02976 931 IKGG-YSNVVESLAEG-----LDIHLNHVVTDVSYGSKDAGASGSSRKKV-KVSTSNGSEFLGDAVLITVPLGCLKAETI 1003 (1713)
T ss_pred eCCC-HHHHHHHHHhh-----CCeecCCeEEEEEecCCcccccccCCCcE-EEEECCCCEEEeceEEEeCCHHHhhhccc
Confidence 4455 45677777653 35999999999998410 1233 44544 5589999999999999987 45
Q ss_pred hhhccccChHHHHhhccccceeEEEEEEEeccCCCCCCCCceeeccCC----Cccc--eeeeccccccccCCCCCeEEEE
Q 009646 311 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD----SLAW--TFFDLNKIYDEHKDDSATVIQA 384 (530)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~ 384 (530)
.+.+++|. ....++..+.+..+.++.+.|+++||..... +++... ..+. .+++.. .+.+..++..
T Consensus 1004 ~FsPPLPe-~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d--~FG~s~edtdlrG~~~~~wnlr------~psG~pVLVa 1074 (1713)
T PLN02976 1004 KFSPPLPD-WKYSSIQRLGFGVLNKVVLEFPEVFWDDSVD--YFGATAEETDLRGQCFMFWNVK------KTVGAPVLIA 1074 (1713)
T ss_pred ccCCcccH-HHHHHHHhhccccceEEEEEeCCccccCCCC--ccccccccCCCCceEEEeccCC------CCCCCCEEEE
Confidence 66666653 3345688999999999999999999864322 222111 1111 112111 1122334333
Q ss_pred EecCC--CCCCCCCHHHHHHHHHHHHhHhhcCCCCCccccceEEeCC---C---CceecCCCCcc-cCCCCCCCCCc-eE
Q 009646 385 DFYHA--NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFP---K---SLTHFFPGSYK-YMMRGFTSFPN-LF 454 (530)
Q Consensus 385 ~~~~~--~~~~~~~~eei~~~~l~~L~~~~p~~~~~~i~~~~~~~~~---~---a~~~~~~g~~~-~~~~~~~~~~~-l~ 454 (530)
.+.+. ..+..++++++++.+++.|.++||....+.+....+.+|. + ++....||... .......|+.| ||
T Consensus 1075 fv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLF 1154 (1713)
T PLN02976 1075 LVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLF 1154 (1713)
T ss_pred EeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEE
Confidence 33322 2345688999999999999999985321244555555552 2 23333466432 22233456666 99
Q ss_pred EeeccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcc
Q 009646 455 MAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFS 493 (530)
Q Consensus 455 ~aG~~~~~g~~~~~iega~~sG~~aA~~il~~~~~~~~~ 493 (530)
|||++++..++ ++|+||++||+++|++|+..+..++++
T Consensus 1155 FAGEATS~~~p-GTVHGAIeSG~RAA~eIL~~L~~G~~~ 1192 (1713)
T PLN02976 1155 FAGEATCKEHP-DTVGGAMMSGLREAVRIIDILNTGNDY 1192 (1713)
T ss_pred EEehhhhCCCc-chHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 99999998888 899999999999999999999876664
No 25
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.95 E-value=2.2e-25 Score=229.50 Aligned_cols=425 Identities=16% Similarity=0.152 Sum_probs=224.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----cccccc-------------ccc-HHHHHHHhCCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----ISFWYP-------------FRN-IFSLVDELGIKPF 109 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~~~~-------------~~~-~~~~~~~lg~~~~ 109 (530)
+||||||||++||+||..|+++|++|+||||++.+||+.. +||.++ .++ +.+.+..++....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 5999999999999999999999999999999999999933 444422 122 3344555553311
Q ss_pred CCccc-c-eeeccCCcccccccccCCCC--------CCCcccchh--hhhccC-Cchhhhh-----ccch-hHHHhhhcc
Q 009646 110 TGWMK-S-AQYSEEGLEVEFPIFQDLNQ--------LPTPLGTLF--YTQFSR-LPLVDRL-----TSLP-LMAAVIDFD 170 (530)
Q Consensus 110 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~-~~~~~~~-----~~~~-~~~~~~~~~ 170 (530)
..... . .....++..... ..+... .|.....+. +..... ....... .... +........
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~--~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGLNVKV--HREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHP 158 (493)
T ss_pred ccCCCccEEEECCCCeeEee--ecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhch
Confidence 11111 1 112223311110 000000 000000000 000000 0000000 0000 000000000
Q ss_pred CcchhhhcccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchh
Q 009646 171 NTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKI 250 (530)
Q Consensus 171 ~~~~~~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l 250 (530)
.....+..+...++.+++++. +.++.++.++..........++.+.+.....-.+. ........++.||. ..+
T Consensus 159 ~~~~~~~~~~~~s~~~~~~~~-~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~-----~~~~~g~~~~~gG~-~~l 231 (493)
T TIGR02730 159 LACLGLAKYLPQNAGDIARRY-IRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS-----DRHYGGINYPKGGV-GQI 231 (493)
T ss_pred hhhhHHHHHhhccHHHHHHHh-cCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc-----ccccceEecCCChH-HHH
Confidence 000011122346788888886 44444555555433222222334554433221111 11112345677775 579
Q ss_pred HHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccChhhHH-HhhhhccccChHHHHhhccc
Q 009646 251 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNL 328 (530)
Q Consensus 251 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~~~~~-~ll~~~~~~~~~~~~~~~~l 328 (530)
++.|.+.++++|++|+++++|++|..++ +++.+|.+. ++++.||.||+|++++.+. +|++....+. .....++.+
T Consensus 232 ~~~L~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~-~~~~~~~~~ 308 (493)
T TIGR02730 232 AESLVKGLEKHGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPK-KEKNWQRNY 308 (493)
T ss_pred HHHHHHHHHHCCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccch-hhHHHHhhc
Confidence 9999999999999999999999999876 677788875 5579999999999987665 5776543221 111222333
Q ss_pred cc-eeEEEEEEEeccCCCCC--CCCceeec-c---CCCccceeeec-cccccccCCCCCeEEEEEec-CCCCCC------
Q 009646 329 AS-IDVVSVKLWFDKKVTVP--NVSNACSG-F---GDSLAWTFFDL-NKIYDEHKDDSATVIQADFY-HANELM------ 393 (530)
Q Consensus 329 ~~-~~~~~v~l~~~~~~~~~--~~~~~~~~-~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~------ 393 (530)
.. .+.+++++.++.+..+. ..+..+.. . .......+... +..++..++++.+++.+... ....|.
T Consensus 309 ~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~ 388 (493)
T TIGR02730 309 VKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKD 388 (493)
T ss_pred cCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHH
Confidence 33 34677899998864321 11222211 1 11111222221 23345556666666533221 111121
Q ss_pred -CCCHHHHHHHHHHHHhHhhcCCCCCccccceEEe---------CCCCceecCCCC---cccC-CCCCCCCCceEEeecc
Q 009646 394 -PLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRR---------FPKSLTHFFPGS---YKYM-MRGFTSFPNLFMAGDW 459 (530)
Q Consensus 394 -~~~~eei~~~~l~~L~~~~p~~~~~~i~~~~~~~---------~~~a~~~~~~g~---~~~~-~~~~~~~~~l~~aG~~ 459 (530)
...++++.+.+++.+++.+|++++ .+....+.. .+++.+...+.. ...+ +...++++|||+||++
T Consensus 389 y~~~k~~~~~~il~~l~~~~p~l~~-~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~ 467 (493)
T TIGR02730 389 YEAKKEADAERIIDRLEKIFPGLDS-AIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDS 467 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhh-cEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCc
Confidence 112556889999999999999864 444333321 111111110100 0011 3456889999999999
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHhC
Q 009646 460 ITTRHGSWSQERSYVTGLEAANRVVDYLG 488 (530)
Q Consensus 460 ~~~g~~~~~iega~~sG~~aA~~il~~~~ 488 (530)
+++|- ++.+|+.||+.||+.|+.+++
T Consensus 468 ~~pG~---Gv~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 468 CFPGQ---GLNAVAFSGFACAHRVAADLG 493 (493)
T ss_pred CCCCC---CHHHHHHHHHHHHHHHHhhcC
Confidence 97753 589999999999999997643
No 26
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.94 E-value=1.4e-24 Score=206.23 Aligned_cols=221 Identities=15% Similarity=0.119 Sum_probs=139.2
Q ss_pred CEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHh---hhhccccChHHHHhhccccceeEEEEEEE
Q 009646 263 CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL---IKNSILCNREEFLKVLNLASIDVVSVKLW 339 (530)
Q Consensus 263 ~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~l---l~~~~~~~~~~~~~~~~l~~~~~~~v~l~ 339 (530)
.+++++++|.+|..++ .+.+..-..+|+.+.||+||+|++..++++- ++.+++| ..+.++|+++......|++|.
T Consensus 244 ~~~~~~~rv~~I~~~~-~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP-~~K~~AIe~lgfGtv~KiFLE 321 (498)
T KOG0685|consen 244 KRIHLNTRVENINWKN-TGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLP-AEKQRAIERLGFGTVNKIFLE 321 (498)
T ss_pred hhhcccccceeeccCC-CCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCC-HHHHHHHHhccCCccceEEEE
Confidence 4566679999999886 5666544456779999999999999999863 3444554 456778999999999999999
Q ss_pred eccCCCCCCCCce-eeccCCC-------ccceeeeccccccccCCCCCeEEEEEecCC--CCCCCCCHHHHHHHHHHHHh
Q 009646 340 FDKKVTVPNVSNA-CSGFGDS-------LAWTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVSYLS 409 (530)
Q Consensus 340 ~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~eei~~~~l~~L~ 409 (530)
|.+++|++.-..+ +...++. ..++.-+.....+- +....++...+.+. ..+..++++++.+.+...|.
T Consensus 322 ~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v--~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr 399 (498)
T KOG0685|consen 322 FEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPV--SWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLR 399 (498)
T ss_pred ccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEc--CcchhhhheeccCCcceehhhCCHHHHHHHHHHHHH
Confidence 9999986542211 1111111 00001000000000 01123444444433 33567999999999999999
Q ss_pred HhhcCCCC---CccccceEEe---CCCCceecCCCCccc------CCCC---CCCCCceEEeeccccCCCCCCcchHHHH
Q 009646 410 KCIKDFST---ATVMDHKIRR---FPKSLTHFFPGSYKY------MMRG---FTSFPNLFMAGDWITTRHGSWSQERSYV 474 (530)
Q Consensus 410 ~~~p~~~~---~~i~~~~~~~---~~~a~~~~~~g~~~~------~~~~---~~~~~~l~~aG~~~~~g~~~~~iega~~ 474 (530)
+++++..- .++....+.. .++++....+|.... .|.. .++-+.|.|||++++..+. .+++||++
T Consensus 400 ~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~Y-sTthGA~~ 478 (498)
T KOG0685|consen 400 KFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFY-STTHGAVL 478 (498)
T ss_pred HhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccce-ehhhhhHH
Confidence 99875321 2233322221 133333333443221 1111 1244689999999998776 79999999
Q ss_pred HHHHHHHHHHHHhC
Q 009646 475 TGLEAANRVVDYLG 488 (530)
Q Consensus 475 sG~~aA~~il~~~~ 488 (530)
||++.|++|++...
T Consensus 479 SG~REA~RL~~~y~ 492 (498)
T KOG0685|consen 479 SGWREADRLLEHYE 492 (498)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999998655
No 27
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.94 E-value=3.9e-26 Score=233.89 Aligned_cols=227 Identities=21% Similarity=0.198 Sum_probs=143.4
Q ss_pred HHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccccc
Q 009646 251 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS 330 (530)
Q Consensus 251 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~ 330 (530)
...+...+...|++|++|++|++|+.++ +++..+..+++++.||+||+|+|...+.++...++++ ......++.+.+
T Consensus 212 ~~~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~-~~~~~a~~~~~~ 288 (450)
T PF01593_consen 212 SLALALAAEELGGEIRLNTPVTRIERED--GGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLP-EDKRRAIENLPY 288 (450)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEEEES--SEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSH-HHHHHHHHTEEE
T ss_pred hHHHHHHHhhcCceeecCCcceeccccc--cccccccccceEEecceeeecCchhhhhhhhhccccc-cccccccccccc
Confidence 3334444456688999999999999997 7776666667799999999999999999633333222 223455678888
Q ss_pred eeEEEEEEEeccCCCCCCC-CceeeccCC-CccceeeeccccccccCCCCCeEEEEEecCC--CCCCCCCHHHHHHHHHH
Q 009646 331 IDVVSVKLWFDKKVTVPNV-SNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVS 406 (530)
Q Consensus 331 ~~~~~v~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~eei~~~~l~ 406 (530)
.+..++.+.++.++|.+.. ...+...+. .....+.+.+...+. .++.++...+... ..+..++++++.+.+++
T Consensus 289 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~ 365 (450)
T PF01593_consen 289 SSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLD 365 (450)
T ss_dssp EEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHH
T ss_pred CcceeEEEeeecccccccccccceecccCccccccccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHHH
Confidence 8888999999999987642 111211222 111112222211111 2333332222211 34567889999999999
Q ss_pred HHhHhhcCCCCCccccceEEeCCC-----Cce-ecCCCCc-ccCCCCCCCC-CceEEeeccccCCCCCCcchHHHHHHHH
Q 009646 407 YLSKCIKDFSTATVMDHKIRRFPK-----SLT-HFFPGSY-KYMMRGFTSF-PNLFMAGDWITTRHGSWSQERSYVTGLE 478 (530)
Q Consensus 407 ~L~~~~p~~~~~~i~~~~~~~~~~-----a~~-~~~~g~~-~~~~~~~~~~-~~l~~aG~~~~~g~~~~~iega~~sG~~ 478 (530)
+|.+++|......+....+.+|.. ..+ .+.++.. ..++....++ +||||||||++++++ +++|+|+.||++
T Consensus 366 ~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~gA~~sG~~ 444 (450)
T PF01593_consen 366 DLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP-GGIEGAILSGRR 444 (450)
T ss_dssp HHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST-TSHHHHHHHHHH
T ss_pred HhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCC-CcHHHHHHHHHH
Confidence 999999841112233334444533 222 2333332 1344455676 699999999998877 799999999999
Q ss_pred HHHHHH
Q 009646 479 AANRVV 484 (530)
Q Consensus 479 aA~~il 484 (530)
||++||
T Consensus 445 aA~~il 450 (450)
T PF01593_consen 445 AAEEIL 450 (450)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999986
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.93 E-value=5.6e-24 Score=198.66 Aligned_cols=410 Identities=15% Similarity=0.155 Sum_probs=259.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCCCCCCCcc-----cccccc------------cccHHHHHHHhCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDGNGFGSPDD-----ISFWYP------------FRNIFSLVDELGI 106 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~--~V~vlE~~~~~GG~~~-----~g~~~~------------~~~~~~~~~~lg~ 106 (530)
..++|+|||||++||++||+|++++. .|+|+|+++|+||++. +++++. ...+++++.++|+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl 89 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL 89 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence 45799999999999999999999976 4677999999999943 566542 1248899999999
Q ss_pred CCCCCcccc-------ee-eccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcchhhhc
Q 009646 107 KPFTGWMKS-------AQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRK 178 (530)
Q Consensus 107 ~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (530)
+......+. .+ +..+. ...+|..+....+.....+ ..++..+.+.-......-..
T Consensus 90 ~~e~~~i~~~~paaknr~l~~~~~----------L~~vP~sl~~s~~~~l~p~-------~k~L~~a~l~e~fr~~~~~~ 152 (491)
T KOG1276|consen 90 EDELQPIDISHPAAKNRFLYVPGK----------LPTVPSSLVGSLKFSLQPF-------GKPLLEAFLRELFRKKVSDP 152 (491)
T ss_pred cceeeecCCCChhhhheeeccCcc----------cccCCcccccccccccCcc-------cchhHHHHHhhhccccCCCC
Confidence 743222111 11 11111 1223332221110000000 11111121111001111123
Q ss_pred ccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcc---------------------
Q 009646 179 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF--------------------- 237 (530)
Q Consensus 179 ~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~--------------------- 237 (530)
..++|+++|.++ .+++++.++++.+++.+.+..|+.++|.......++..+..++...
T Consensus 153 ~~dESV~sF~~R-rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~ 231 (491)
T KOG1276|consen 153 SADESVESFARR-RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALS 231 (491)
T ss_pred CccccHHHHHHH-hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhh
Confidence 467899999998 4789999999999999999999999999988888887766554211
Q ss_pred --------eeEeecCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-C-eeEecCEEEEccChhhH
Q 009646 238 --------DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGISTL 307 (530)
Q Consensus 238 --------~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~-~~~~ad~VV~a~~~~~~ 307 (530)
.+...+|| .+.+.+++.+.|.+..+.|.++.++..+....+++........ + ..+..++++.+.+...+
T Consensus 232 ~~~~~e~~~~~sl~gG-le~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~ 310 (491)
T KOG1276|consen 232 AQAKKEKWTMFSLKGG-LETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKL 310 (491)
T ss_pred hhhcccccchhhhhhh-HhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHh
Confidence 01112344 4678899999998888999999999999876522222222222 2 35667778889999999
Q ss_pred HHhhhhccccChHHHHhhccccceeEEEEEEEeccC-CCCCC-CCceeeccCC----CccceeeeccccccccCCCCCe-
Q 009646 308 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK-VTVPN-VSNACSGFGD----SLAWTFFDLNKIYDEHKDDSAT- 380 (530)
Q Consensus 308 ~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~-~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~- 380 (530)
.++++.... .....+..+.+.++..+.+.|.++ ...+. ..+.+..... ..--++||... .+...+.+..
T Consensus 311 a~ll~~~~~---sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~-Fp~~~~s~~vt 386 (491)
T KOG1276|consen 311 AKLLRGLQN---SLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSML-FPDRSPSPKVT 386 (491)
T ss_pred hhhccccch---hhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeeccc-CCCCCCCceEE
Confidence 999987522 233456788899999999999875 22222 2222222110 11123555332 2222222222
Q ss_pred EEE-EEecCCCCCCCCCHHHHHHHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCC----CC-CCCceE
Q 009646 381 VIQ-ADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG----FT-SFPNLF 454 (530)
Q Consensus 381 ~~~-~~~~~~~~~~~~~~eei~~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~----~~-~~~~l~ 454 (530)
++. ...+........+++|+++.+.++|.+++ .+.+ .....+++-|+.+.|.|+.|+......+ ++ +..+|+
T Consensus 387 vm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~L-gi~~-~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~ 464 (491)
T KOG1276|consen 387 VMMGGGGSTNTSLAVPSPEELVNAVTSALQKML-GISN-KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLF 464 (491)
T ss_pred EEecccccccCcCCCCCHHHHHHHHHHHHHHHh-CCCC-CcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceE
Confidence 111 11222233456789999999999999999 4443 3556666679999999999986543332 22 235899
Q ss_pred EeeccccCCCCCCcchHHHHHHHHHHHHHH
Q 009646 455 MAGDWITTRHGSWSQERSYVTGLEAANRVV 484 (530)
Q Consensus 455 ~aG~~~~~g~~~~~iega~~sG~~aA~~il 484 (530)
++|.|..+ -.+..++++|+.+|.+++
T Consensus 465 l~G~~y~G----v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 465 LGGNHYGG----VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred eeccccCC----CChhHHHHhhHHHHHhhc
Confidence 99999963 268899999999998764
No 29
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.91 E-value=8.3e-22 Score=197.32 Aligned_cols=435 Identities=15% Similarity=0.138 Sum_probs=241.9
Q ss_pred cCCcCccCCccccCCCCCCCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEcCCCCCCCCcc------ccccc-----
Q 009646 28 TLQSNANGDRNSTNNNGKNKKKIVVVGSGWAGLGAAHHLSKQ----GFDVTVLDDGNGFGSPDD------ISFWY----- 92 (530)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~dVvIIGaG~aGL~aA~~La~~----G~~V~vlE~~~~~GG~~~------~g~~~----- 92 (530)
+.+++++.+++.. +....+++|+|||||++||+||++|++. |.+|+|||+++.+||+.+ .||..
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~ 82 (576)
T PRK13977 4 SNGNYEAFARPRK-PEGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE 82 (576)
T ss_pred CCCcHHHhccCCC-CCCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC
Confidence 3345554433322 2334467999999999999999999996 679999999999999954 45543
Q ss_pred ---ccccHHHHHHHhCCCCC---CCcccceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHh
Q 009646 93 ---PFRNIFSLVDELGIKPF---TGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAV 166 (530)
Q Consensus 93 ---~~~~~~~~~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (530)
.+.+++++++++.-... ....+...+........ . .++....+...-...-.++..+...+ +...
T Consensus 83 ~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s-----~-~Rl~~~~g~~~d~~~~~L~~k~r~~L---l~l~ 153 (576)
T PRK13977 83 MENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYS-----K-ARLIHKRGEILDTDKFGLSKKDRKEL---LKLL 153 (576)
T ss_pred ccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccc-----e-eeEEcCCCCEEECcCCCCCHHHHHHH---HHHh
Confidence 24567777777632111 11111111111100000 0 00000000000001112222222222 2221
Q ss_pred hhccCcchhhhcccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhc---CcceeEeec
Q 009646 167 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ---KNFDLVWCR 243 (530)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~---~~~~~~~~~ 243 (530)
. ...+.+++.++++|++...+... ...++.++ ..-....|+.+....++.+...-. ....+.+.+
T Consensus 154 l------~~e~~Ld~~tI~d~f~~~Ff~t~-Fw~~w~t~-----FaF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ 221 (576)
T PRK13977 154 L------TPEEKLDDKTIEDWFSPEFFETN-FWYYWRTM-----FAFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTK 221 (576)
T ss_pred c------cCHHHhCCcCHHHHHhhcCchhH-HHHHHHHH-----HCCchhhHHHHHHHHHHHHHHhhccCCccccccCCC
Confidence 1 12456788999999998665443 34444443 234478888888777776643322 223345566
Q ss_pred CCCcchhHHHHHHHHHhcCCEEEcCceeeEEEec-C-CCCeEEEEEEC--Ce-----eEecCEEEEccChhhHHHhhhhc
Q 009646 244 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYD-E-ERCCISDVVCG--KE-----TYSAGAVVLAVGISTLQELIKNS 314 (530)
Q Consensus 244 gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~-~-~~g~v~~v~~~--~~-----~~~ad~VV~a~~~~~~~~ll~~~ 314 (530)
.+.++.++.+|.+.++++||+|+++++|++|..+ + +.++|.++... |+ ....|.||+|+|...-..-+++.
T Consensus 222 ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~ 301 (576)
T PRK13977 222 YNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDM 301 (576)
T ss_pred CCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCC
Confidence 7778999999999999999999999999999986 2 12567777663 22 35689999999986555444332
Q ss_pred --ccc-------ChHHHHhhc----ccc----------ceeEEEEEEEeccCCC--------CCCCC-c-----eeeccC
Q 009646 315 --ILC-------NREEFLKVL----NLA----------SIDVVSVKLWFDKKVT--------VPNVS-N-----ACSGFG 357 (530)
Q Consensus 315 --~~~-------~~~~~~~~~----~l~----------~~~~~~v~l~~~~~~~--------~~~~~-~-----~~~~~~ 357 (530)
|++ .+..++++. .++ -..+....+.++.+.. ...+. + .+..+.
T Consensus 302 ~~p~~~~~~~~~~w~LW~~la~~~~~fG~P~~F~~~~~~s~w~SfTvT~~~~~~~~~i~~~t~~~p~~g~~~tg~~vt~~ 381 (576)
T PRK13977 302 DTPAPLNRELGGSWTLWKNIAAQSPEFGNPDKFCGDIPESNWESFTVTTKDPKILPYIERITGRDPGSGKTVTGGIVTFK 381 (576)
T ss_pred CCCCCCCCCCCccHHHHHHHHhcCccCCChhhhcCCcccceEEEEEEEcCCHHHHHHHHHHhCCCCCCCccccCceeEEe
Confidence 111 122223322 111 1122233344433210 01111 1 011111
Q ss_pred CCccceeeeccccccccCCCCCeEEEEEec---C-------CCCCCCCCHHHHHHHHHHHHhH---hhcCCCCCccccce
Q 009646 358 DSLAWTFFDLNKIYDEHKDDSATVIQADFY---H-------ANELMPLKDDQVVAKAVSYLSK---CIKDFSTATVMDHK 424 (530)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~eei~~~~l~~L~~---~~p~~~~~~i~~~~ 424 (530)
...|.+.-.....+.|..++..+..+..| + .+++.+++.+||.++++.+|.- .++++..... ...
T Consensus 382 -dS~W~~s~~v~~QP~F~~Qp~d~~v~WgY~l~~~~~G~yvkKpm~~CtG~Ei~~E~l~Hl~~~~~~~~~i~~~~~-~~i 459 (576)
T PRK13977 382 -DSNWLMSITVNRQPHFKNQPKNETVVWGYGLYPDRPGNYVKKPMRECTGEEILQELLYHLGVPEDKIEELAADSA-NTI 459 (576)
T ss_pred -cCCeeEEEEecCCCCCCCCCCCcEEEEEEecccCCCCCccCCchhhCCHHHHHHHHHHhcCCchhhHHHHHhhcC-ceE
Confidence 11232211122234555555554444433 1 2567789999999999999832 1112110011 111
Q ss_pred EEeCCCCceecCCCCcccCCCCCC-CCCceEEeeccccCCCC-CCcchHHHHHHHHHHHHHHHH
Q 009646 425 IRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHG-SWSQERSYVTGLEAANRVVDY 486 (530)
Q Consensus 425 ~~~~~~a~~~~~~g~~~~~~~~~~-~~~~l~~aG~~~~~g~~-~~~iega~~sG~~aA~~il~~ 486 (530)
....|+....+.|.....||...+ +..||-|.|.++..... +.++|.++++|+.|+..++.-
T Consensus 460 p~~MP~ita~f~pR~~gDRP~VvP~g~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~~ 523 (576)
T PRK13977 460 PVMMPYITSQFMPRAKGDRPLVVPEGSTNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLGV 523 (576)
T ss_pred eeccchhhhhhCCCCCCCCCCcCCCCcceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhCC
Confidence 112566666666666556777653 46799999999975322 378999999999999999854
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=3.9e-23 Score=210.82 Aligned_cols=419 Identities=15% Similarity=0.114 Sum_probs=208.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----cccccc-------cccHHHHHHHhC-CCCCC-Cc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----ISFWYP-------FRNIFSLVDELG-IKPFT-GW 112 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~~~~-------~~~~~~~~~~lg-~~~~~-~~ 112 (530)
..+||||||||++||+||..|+++|++|+||||++++||+.. .||.++ ......++++++ +.... .+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~~~~~~l~~l~~~~l~~ 81 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPGPLFRELGNLDADGLDL 81 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchHHHHHHhccCcccceee
Confidence 458999999999999999999999999999999999999933 566644 333446777777 55321 11
Q ss_pred ---ccc-eeeccCCcccccccccCCCCCCCcccchhhhhccCCc-hh-hhhccchhHHHhhh---------ccC---cch
Q 009646 113 ---MKS-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLP-LV-DRLTSLPLMAAVID---------FDN---TDV 174 (530)
Q Consensus 113 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~---------~~~---~~~ 174 (530)
... ..+..++..... +.+.......+......+...+. +. ...+.++......- ... ...
T Consensus 82 ~~~~~~~~~~~~~g~~~~~--~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (487)
T COG1233 82 LPPDPAYRVFLPDGDAIDV--YTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLL 159 (487)
T ss_pred eccCCceeeecCCCCEEEe--cCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHH
Confidence 111 122222211110 00000000000000000000000 00 00000000000000 000 001
Q ss_pred hhhcccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHH
Q 009646 175 AWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPW 254 (530)
Q Consensus 175 ~~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l 254 (530)
.+......+..+++... +..+..+..+........ .++...++ ...+... ........+++||+ ..|+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a---~~~~~~~---~~~~~G~~~p~GG~-~al~~aL 230 (487)
T COG1233 160 RLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPA---LYLLLSH---LGLSGGVFYPRGGM-GALVDAL 230 (487)
T ss_pred HHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhH---HHHHHHH---hcccCCeeeeeCCH-HHHHHHH
Confidence 11122334566666665 655555555443322222 44444441 1111111 12234457788885 5799999
Q ss_pred HHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCe-eEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeE
Q 009646 255 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDV 333 (530)
Q Consensus 255 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~-~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~ 333 (530)
++.++++|++|+++++|++|..++ |+.+.+.+..+ .+++|.||+++.......+...... .... -........
T Consensus 231 ~~~~~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~--~~~~--~~~~~~~~a 304 (487)
T COG1233 231 AELAREHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGEARR--PRYR--GSYLKSLSA 304 (487)
T ss_pred HHHHHHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhhhhh--hccc--cchhhhhHH
Confidence 999999999999999999999987 66556666554 8899999999999555555543211 0000 011111222
Q ss_pred EEEEEEeccCCCCCCCCceeeccCC------C----cc---ce-eeeccccccccCCCCCeEEEEEecCCC--CCCCCCH
Q 009646 334 VSVKLWFDKKVTVPNVSNACSGFGD------S----LA---WT-FFDLNKIYDEHKDDSATVIQADFYHAN--ELMPLKD 397 (530)
Q Consensus 334 ~~v~l~~~~~~~~~~~~~~~~~~~~------~----~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 397 (530)
....+.++........+..+...+. . .+ +. +...+..++..+|.+++.+...+.... ...+..+
T Consensus 305 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~ 384 (487)
T COG1233 305 LSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELK 384 (487)
T ss_pred HHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHH
Confidence 2334445443111111111111110 0 00 11 222344456666666652222222111 1122234
Q ss_pred HHHHHHHHHHHhHhhcCCCCCccccceEEe----------CCCCce--ecCCC-CcccCCCC-CCCCCceEEeeccccCC
Q 009646 398 DQVVAKAVSYLSKCIKDFSTATVMDHKIRR----------FPKSLT--HFFPG-SYKYMMRG-FTSFPNLFMAGDWITTR 463 (530)
Q Consensus 398 eei~~~~l~~L~~~~p~~~~~~i~~~~~~~----------~~~a~~--~~~~g-~~~~~~~~-~~~~~~l~~aG~~~~~g 463 (530)
+++.+. +..+++.+|++++ .++...+.. ..+..+ ..+.. ....||.. .++++|||++|+++++|
T Consensus 385 ~~~~~~-~~~~~~~~p~~~~-~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG 462 (487)
T COG1233 385 ESLADA-IDALEELAPGLRD-RIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPG 462 (487)
T ss_pred HHHHHH-HHHHhhcCCCccc-ceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCC
Confidence 455555 5678999998875 344333331 011111 11111 22334544 48899999999999886
Q ss_pred CCCCcchHHHHHHHHHHHHHHHH
Q 009646 464 HGSWSQERSYVTGLEAANRVVDY 486 (530)
Q Consensus 464 ~~~~~iega~~sG~~aA~~il~~ 486 (530)
-+ +.++..++..++..+...
T Consensus 463 ~G---v~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 463 GG---VPGVPGSAAAVALLIDLD 482 (487)
T ss_pred CC---cchhhhhHHHHHhhhccc
Confidence 54 566655666555555443
No 31
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.89 E-value=1.5e-22 Score=177.93 Aligned_cols=216 Identities=15% Similarity=0.082 Sum_probs=136.7
Q ss_pred HHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--CeeEecCEEEEccChhhHHHhhhhccccChH-HHHhhccccc
Q 009646 254 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTLQELIKNSILCNRE-EFLKVLNLAS 330 (530)
Q Consensus 254 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~-~~~~~~~l~~ 330 (530)
|++.|. ...+|+++++|++|...+ +. +.+.++ ++...+|.||+|+|...+..|+......... ....+..+.+
T Consensus 110 lak~LA-tdL~V~~~~rVt~v~~~~--~~-W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y 185 (331)
T COG3380 110 LAKFLA-TDLTVVLETRVTEVARTD--ND-WTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVY 185 (331)
T ss_pred HHHHHh-ccchhhhhhhhhhheecC--Ce-eEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhcccee
Confidence 444333 247899999999999876 43 455653 3478999999999999999888543111112 3345677788
Q ss_pred eeEEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCC--CCCCCCCHHHHHHHHHHHH
Q 009646 331 IDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVSYL 408 (530)
Q Consensus 331 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~eei~~~~l~~L 408 (530)
.|+..+.+.|..+...|.+. ++--+...+|.-.+.+. +... +.+.++.+...+. ..+...++++.+..+....
T Consensus 186 ~Pc~s~~lg~~q~l~~P~~G--~~vdg~~laWla~d~sK--~g~~-p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~ 260 (331)
T COG3380 186 APCWSAVLGYPQPLDRPWPG--NFVDGHPLAWLARDASK--KGHV-PDGEIWVVQASPDWSREHLDHPAEQVIVALRAAA 260 (331)
T ss_pred hhHHHHHhcCCccCCCCCCC--cccCCCeeeeeeccccC--CCCC-CcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhh
Confidence 88777788888777655544 22223345664444221 2222 2233333332221 2344566777775555555
Q ss_pred hHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCCC-CCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHHHHh
Q 009646 409 SKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 487 (530)
Q Consensus 409 ~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~-~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~~~ 487 (530)
..++++-- +.+.+...++|+|+.|....+. +... .+..+||+||||+++ +-+|||++||..+|++|++.+
T Consensus 261 ~~~~~~~~-~~p~~s~~H~WrYA~P~~~~~~----~~L~ad~~~~l~~cGDwc~G----grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 261 QELDGDRL-PEPDWSDAHRWRYAIPNDAVAG----PPLDADRELPLYACGDWCAG----GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred hhccCCCC-CcchHHHhhccccccccccccC----CccccCCCCceeeecccccC----cchhHHHhccHHHHHHHHhcC
Confidence 55554321 3466777888999998665543 2222 344689999999975 368999999999999999764
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.88 E-value=7e-21 Score=173.07 Aligned_cols=266 Identities=22% Similarity=0.233 Sum_probs=173.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc-------c-------cccc----cccccHHHHHHHhC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD-------D-------ISFW----YPFRNIFSLVDELG 105 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~-------~-------~g~~----~~~~~~~~~~~~lg 105 (530)
....++|+|||+|++||+|||.|+++ ++|+|+|++.++||+. + .||+ ..|+++.++++++|
T Consensus 5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iG 83 (447)
T COG2907 5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIG 83 (447)
T ss_pred CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcC
Confidence 34567999999999999999999986 8999999999999991 2 3333 25899999999999
Q ss_pred CCCCCCccc-ceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccCcc---hhhhcccC
Q 009646 106 IKPFTGWMK-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTD---VAWRKYDS 181 (530)
Q Consensus 106 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 181 (530)
++....+.. ....+..++.+.... .+ ..+ +.+...+ ...+.+..+.+++.|.... .+......
T Consensus 84 v~t~as~Msf~v~~d~gglEy~g~t-----gl-~~L----~aqk~n~---l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~ 150 (447)
T COG2907 84 VDTKASFMSFSVSLDMGGLEYSGLT-----GL-AGL----LAQKRNL---LRPRFPCMLAEILRFYRSDLAPSDNAGQGD 150 (447)
T ss_pred CCCcccceeEEEEecCCceeeccCC-----Cc-cch----hhccccc---cchhHHHHHHHHHHHhhhhccchhhhcCCC
Confidence 985544332 223344445443210 00 000 0111111 1122334444444444321 11233456
Q ss_pred ccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcc---eeEe--ecCCCcchhHHHHHH
Q 009646 182 ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF---DLVW--CRGTLREKIFEPWMD 256 (530)
Q Consensus 182 ~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~---~~~~--~~gg~~~~l~~~l~~ 256 (530)
.++.+||++.+++..+++.++.|+....|+++..+++...+...+.++. +++-.. ...| ..|| ....++.|.
T Consensus 151 ~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~-nhGll~l~~rp~wrtV~gg-S~~yvq~la- 227 (447)
T COG2907 151 TTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTD-NHGLLYLPKRPTWRTVAGG-SRAYVQRLA- 227 (447)
T ss_pred ccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHh-ccCceecCCCCceeEcccc-hHHHHHHHh-
Confidence 8999999999999999999999999999999999999888777665442 222110 0111 1133 223333333
Q ss_pred HHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccccceeE
Q 009646 257 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDV 333 (530)
Q Consensus 257 ~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~ 333 (530)
...+++|.++++|.+|..-+ +| ++.+..+|+.-++|.||+|+-+..+..||+++.. ...+.+..+.+...
T Consensus 228 --a~~~~~i~t~~~V~~l~rlP-dG-v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~sp---~e~qll~a~~Ys~n 297 (447)
T COG2907 228 --ADIRGRIETRTPVCRLRRLP-DG-VVLVNADGESRRFDAVVIATHPDQALALLDEPSP---EERQLLGALRYSAN 297 (447)
T ss_pred --ccccceeecCCceeeeeeCC-Cc-eEEecCCCCccccceeeeecChHHHHHhcCCCCH---HHHHHHHhhhhhhc
Confidence 33467899999999999987 45 4455566888899999999999999999988632 22334455555443
No 33
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.86 E-value=3.1e-19 Score=167.76 Aligned_cols=240 Identities=15% Similarity=0.116 Sum_probs=147.6
Q ss_pred eeEeecCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccChhhHH-Hhhhhcc
Q 009646 238 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSI 315 (530)
Q Consensus 238 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~~~~~-~ll~~~~ 315 (530)
...|+.||++ .+..++++.+++.|++|.+++.|.+|..++ |++++|+.. |.++++..||+.+.+|.+- +|++...
T Consensus 255 ~~~Yp~GG~G-avs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 255 GWGYPRGGMG-AVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred cccCCCCChh-HHHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence 3457888865 699999999999999999999999999987 999999987 5589999999988888765 8888775
Q ss_pred ccChHHHHhhccccce-eEE----EEEEEeccCCCCCCCCceee----------------c----cCCCccceee-eccc
Q 009646 316 LCNREEFLKVLNLASI-DVV----SVKLWFDKKVTVPNVSNACS----------------G----FGDSLAWTFF-DLNK 369 (530)
Q Consensus 316 ~~~~~~~~~~~~l~~~-~~~----~v~l~~~~~~~~~~~~~~~~----------------~----~~~~~~~~~~-~~~~ 369 (530)
++..- .++++.++ +.. -.++..+..-..+.++..+. . ......-..+ -++.
T Consensus 332 LPeef---~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~ 408 (561)
T KOG4254|consen 332 LPEEF---VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSS 408 (561)
T ss_pred CCchh---hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccc
Confidence 54321 33333332 111 12333332222222221110 0 0001111111 1345
Q ss_pred cccccCCCCCeEEEE-EecCCCCC-------CCCCHHHHHHHHHHHHhHhhcCCCCCccccceEE----------eCCCC
Q 009646 370 IYDEHKDDSATVIQA-DFYHANEL-------MPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIR----------RFPKS 431 (530)
Q Consensus 370 ~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~eei~~~~l~~L~~~~p~~~~~~i~~~~~~----------~~~~a 431 (530)
+++.+.+++++++.+ ..|.+..| .+.-+++..+++.+.+++++|++... +....+. +..+.
T Consensus 409 lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsss-v~~~dvgTP~t~qr~l~~~~Gn 487 (561)
T KOG4254|consen 409 LDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSS-VESYDVGTPPTHQRFLGRPGGN 487 (561)
T ss_pred cCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccce-EEEEecCCCchhhHHhcCCCCc
Confidence 667788788887644 22322222 23345678999999999999998753 4322222 12233
Q ss_pred ceecCCC--C-cccCCCC-----CCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHHHHhCC
Q 009646 432 LTHFFPG--S-YKYMMRG-----FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 489 (530)
Q Consensus 432 ~~~~~~g--~-~~~~~~~-----~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~~~~~ 489 (530)
++...-+ + .-.+|.. ++|++|||+||+.+.+|-+ +-++. |+.+|...+...+.
T Consensus 488 ~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgG---V~a~a--G~~~A~~a~~~~~~ 548 (561)
T KOG4254|consen 488 IFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGG---VMAAA--GRLAAHSAILDRKL 548 (561)
T ss_pred ccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCC---ccccc--hhHHHHHHhhhhhh
Confidence 3221111 1 1123433 7899999999999988654 44443 88888887776664
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.76 E-value=1.1e-16 Score=159.75 Aligned_cols=246 Identities=13% Similarity=0.203 Sum_probs=146.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----cccc----------------------------c
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----ISFW----------------------------Y 92 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~~----------------------------~ 92 (530)
+..+||||||+|++|+.+|..|+++|.+|+++|++++.||+.. ..++ +
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 3569999999999999999999999999999999999999933 1110 0
Q ss_pred ccccHHHHHHHhCCCCCCCcccc-eeec--cCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhc
Q 009646 93 PFRNIFSLVDELGIKPFTGWMKS-AQYS--EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDF 169 (530)
Q Consensus 93 ~~~~~~~~~~~lg~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (530)
....+.+++.+.++..+..+... ..+. .++. ...+|......+ ..+.+++.++....+.+....++
T Consensus 82 ~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~---------~~~vP~s~~~~~--~s~ll~l~eKr~l~kfl~~v~~~ 150 (443)
T PTZ00363 82 ASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGK---------IHKVPATDMEAL--SSPLMGFFEKNRCKNFLQYVSNY 150 (443)
T ss_pred cCChHHHHHhhcCccceeeeEEeceEEEEecCCe---------EEECCCCHHHHh--hCCCcchhhHHHHHHHHHHHHhh
Confidence 12335555556665544333221 1111 1111 111222111111 12333444555555555444433
Q ss_pred cCcc-hhhhc--ccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHH--hhcCcceeEeecC
Q 009646 170 DNTD-VAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRG 244 (530)
Q Consensus 170 ~~~~-~~~~~--~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~--~~~~~~~~~~~~g 244 (530)
...+ ..+.. ++..++.+|++++++++...+ ++...+......+..+.++......+..+.. ..++.....++.+
T Consensus 151 ~~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~g 229 (443)
T PTZ00363 151 DENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLY 229 (443)
T ss_pred ccCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCC
Confidence 3221 12333 346899999999999887544 2222221211111112223222222222221 2233334467787
Q ss_pred CCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccCh
Q 009646 245 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 304 (530)
Q Consensus 245 g~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~ 304 (530)
|+ ..|.+++.+.+...|++++++++|++|..++ +++++.|.+. |+++.|+.||+....
T Consensus 230 G~-g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 230 GL-GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDE-NGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred CH-HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcC-CCeEEEEEECCCcEEECCEEEECccc
Confidence 75 4699999999999999999999999999875 4677778874 668999999985543
No 35
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.70 E-value=1.7e-14 Score=140.39 Aligned_cols=414 Identities=15% Similarity=0.122 Sum_probs=214.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCeEEEEcCCCCCCCCcc------ccccc--------ccccHHHHHHHh-CCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQ----GFDVTVLDDGNGFGSPDD------ISFWY--------PFRNIFSLVDEL-GIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~----G~~V~vlE~~~~~GG~~~------~g~~~--------~~~~~~~~~~~l-g~~ 107 (530)
..++-|||+|+|+|+||.+|.+. |.+|+|||+.+..||.++ .||+. ++..+.++++.+ .++
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~~~~eclwdLls~IPSle 81 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMMEFHYECLWDLLSSIPSLE 81 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccccchhHHHHHHHHhCCCCC
Confidence 35788999999999999999987 459999999999999966 56653 345566676665 222
Q ss_pred CCCCcccceeeccCCcccccccccCCCCCCCcccchhh-hhccCCchhhhhccchhHHHhhhccCcchhhhcccCccHHH
Q 009646 108 PFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFY-TQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARE 186 (530)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 186 (530)
..........+..+.. .+.. ...++-..-+.... ..--.++..++..+.+++.. .-+.+.+.++++
T Consensus 82 ~p~~SVlDe~~~~n~~---~p~~-s~~Rli~~~G~~~~~~~~~~Ls~k~r~eL~kL~l~---------~E~~L~~~~I~d 148 (500)
T PF06100_consen 82 DPGKSVLDEIYWFNKE---DPNY-SKARLIDKRGQIVDTDSKFGLSEKDRMELIKLLLT---------PEEDLGDKRIED 148 (500)
T ss_pred CCCCcHHHHHHHhccC---CCCC-cceeeeccCCccccccCcCCCCHHHHHHHHHHhcC---------CHHHhCcccHHH
Confidence 1111100011110000 0000 00011110010000 01122333344333332211 113456778888
Q ss_pred HHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcc---eeEeecCCCcchhHHHHHHHHHhcCC
Q 009646 187 LFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF---DLVWCRGTLREKIFEPWMDSMRTRGC 263 (530)
Q Consensus 187 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~---~~~~~~gg~~~~l~~~l~~~l~~~G~ 263 (530)
|+...-+...+.. +|. +.+.. -.-.|+.++..-++.+...-.+-. .+...+-+.++.++.+|.+.|+++||
T Consensus 149 ~F~~~FF~SnFW~-~W~----T~FAF-qpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV 222 (500)
T PF06100_consen 149 WFSESFFESNFWY-MWS----TMFAF-QPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGV 222 (500)
T ss_pred hcchhhhcCchhH-hHH----Hhhcc-CcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCC
Confidence 8886444433321 111 22222 234456565555555543332222 22334455678899999999999999
Q ss_pred EEEcCceeeEEEecCCCC--eEEEEEE--CCe--eE---ecCEEEEccChhhHHHhhhhc--ccc-------ChHHHHhh
Q 009646 264 EFLDGRRVTDFIYDEERC--CISDVVC--GKE--TY---SAGAVVLAVGISTLQELIKNS--ILC-------NREEFLKV 325 (530)
Q Consensus 264 ~i~~~~~V~~I~~~~~~g--~v~~v~~--~~~--~~---~ad~VV~a~~~~~~~~ll~~~--~~~-------~~~~~~~~ 325 (530)
++++|++|+.|+.+..++ .+..+.. +|+ ++ .-|.|+++.|.-+...-.++. |++ .+..++++
T Consensus 223 ~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t~~s~~G~~~~p~~~~~~~~~~W~LW~~l 302 (500)
T PF06100_consen 223 DFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMTEGSTYGDNDTPPPLNKELGGSWSLWKNL 302 (500)
T ss_pred EEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccccccccCCCCCCCCCCCCCCchHHHHHHH
Confidence 999999999999864222 2222222 222 22 358899998875544333221 111 11222222
Q ss_pred c----ccc----------ceeE-EEEEEEeccCC--------CCCCC------CceeeccCCCccceeeeccccccccCC
Q 009646 326 L----NLA----------SIDV-VSVKLWFDKKV--------TVPNV------SNACSGFGDSLAWTFFDLNKIYDEHKD 376 (530)
Q Consensus 326 ~----~l~----------~~~~-~~v~l~~~~~~--------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (530)
. .++ -..+ ....+.++.+. ....+ .+.+..+. ...|.+.-.-...+.|..
T Consensus 303 a~k~~~FG~P~~F~~~~~~s~w~eSfTvT~~d~~~~~~i~~lt~~~p~~g~~~tGgliT~~-DS~WlmS~~i~~QP~F~~ 381 (500)
T PF06100_consen 303 AAKSPDFGNPEKFCTRIPESKWFESFTVTLKDPKFFDYIEKLTGNDPYSGKVGTGGLITFK-DSNWLMSITIPRQPHFPD 381 (500)
T ss_pred HhcCcCCCChhhhcCCcccceeEEEEEEEecChHHHHHHHHHHCCCCCcCccCcCceeEec-cCCeEEEEEECCCCccCC
Confidence 2 111 1122 33344444332 01111 00011111 122422111223355655
Q ss_pred CCCeEEEEEecC----------CCCCCCCCHHHHHHHHHHHHhHhhcCCCCC--ccccceEEeCCCCceecCCCCcccCC
Q 009646 377 DSATVIQADFYH----------ANELMPLKDDQVVAKAVSYLSKCIKDFSTA--TVMDHKIRRFPKSLTHFFPGSYKYMM 444 (530)
Q Consensus 377 ~~~~~~~~~~~~----------~~~~~~~~~eei~~~~l~~L~~~~p~~~~~--~i~~~~~~~~~~a~~~~~~g~~~~~~ 444 (530)
++..+..+..|+ .+++.+++.+||.++++.+|.---..+... ..........|+....+.|.....||
T Consensus 382 QP~dv~V~WgYgL~pd~~GnyVkKpM~eCtG~EIl~ElL~HLg~~~~~~~~~~~~~~~tiP~~MP~its~fmpR~~gDRP 461 (500)
T PF06100_consen 382 QPEDVQVFWGYGLFPDKEGNYVKKPMLECTGEEILTELLYHLGFPDDEIEELAKQSTNTIPCMMPYITSQFMPRAKGDRP 461 (500)
T ss_pred CCCCeEEEEEEecccCCCCCccCCchhhCChHHHHHHHHHhcCCChhhhhHhhccCceEEEeccccchhhccCCCCCCCC
Confidence 555554444331 256778999999999999984322111100 00011112256666666666655677
Q ss_pred CCCC-CCCceEEeeccccCCCC-CCcchHHHHHHHHHH
Q 009646 445 RGFT-SFPNLFMAGDWITTRHG-SWSQERSYVTGLEAA 480 (530)
Q Consensus 445 ~~~~-~~~~l~~aG~~~~~g~~-~~~iega~~sG~~aA 480 (530)
...+ +..||-|.|.++..... +.++|.++++|+.|+
T Consensus 462 ~VvP~g~~NlafiGQFvE~p~D~vfT~EYSVRtA~~AV 499 (500)
T PF06100_consen 462 QVVPEGSTNLAFIGQFVEIPRDTVFTVEYSVRTAQEAV 499 (500)
T ss_pred CcCCCCcceeEEEEcccccCCCEEEEEeehhhhhhhhc
Confidence 7653 46799999999975322 368999999999986
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.69 E-value=6.5e-16 Score=145.41 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=49.1
Q ss_pred eecCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCe-eEecCEEEEccC
Q 009646 241 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVG 303 (530)
Q Consensus 241 ~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~-~~~ad~VV~a~~ 303 (530)
+|.-.....+++.|..++++.||+|+++++|.+|..++ .. ..+.++++ ++.||.+|+|+|
T Consensus 104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~-f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SG-FRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ce-EEEEcCCCCEEEccEEEEecC
Confidence 44433356799999999999999999999999999986 33 45666655 899999999999
No 37
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.67 E-value=3.2e-14 Score=144.35 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccc
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 328 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l 328 (530)
.++..|.+.+.+.|++|+++++|++|+.++ +.++.|.++++++.||.||+|+|.+... ++...... ..+...
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~~-l~~~~g~~-----~pi~p~ 273 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYSTA-LLKPLGVD-----IPVYPL 273 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchHH-HHHHhCCC-----cccCCc
Confidence 567778888888999999999999999876 6666677777799999999999998643 43321100 001111
Q ss_pred cceeEEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 009646 329 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYL 408 (530)
Q Consensus 329 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L 408 (530)
... .+.+.+..+.. .+...+ .+.... ..+ ...++.++.........+....+.+..+.+.+.+
T Consensus 274 rg~---~~~~~~~~~~~--~p~~~~--~~~~~~-~~~---------~~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~ 336 (416)
T PRK00711 274 KGY---SLTVPITDEDR--APVSTV--LDETYK-IAI---------TRFDDRIRVGGMAEIVGFDLRLDPARRETLEMVV 336 (416)
T ss_pred cce---EEEEecCCCCC--CCceeE--EecccC-EEE---------eecCCceEEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 111 11121111111 011000 010000 011 0112233222111111122223345677788889
Q ss_pred hHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCC-CCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHHH
Q 009646 409 SKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 485 (530)
Q Consensus 409 ~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~-~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~ 485 (530)
.++||.+.+..+...+ .+...++++.. |.+ ..+.+|+|++..+.+.| +--+...|+.+|+.|+.
T Consensus 337 ~~~~P~l~~~~~~~~w-----~G~r~~t~D~~---PiIG~~~~~gl~~a~G~~g~G-----~~~ap~~g~~la~li~g 401 (416)
T PRK00711 337 RDLFPGGGDLSQATFW-----TGLRPMTPDGT---PIVGATRYKNLWLNTGHGTLG-----WTMACGSGQLLADLISG 401 (416)
T ss_pred HHHCCCccccccccee-----eccCCCCCCCC---CEeCCcCCCCEEEecCCchhh-----hhhhhhHHHHHHHHHcC
Confidence 9999987644444322 22333444432 221 11358999998888544 34577889999998873
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.67 E-value=1.2e-14 Score=144.44 Aligned_cols=202 Identities=16% Similarity=0.118 Sum_probs=107.9
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhcc
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 327 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~ 327 (530)
..+...|.+.+++.|++|+.+++|++|..++ +++.+|.++++++.||.||+|+|++... ++......
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g~i~ad~vV~a~G~~s~~-l~~~~~~~---------- 213 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDGEIRADRVVLAAGAWSPQ-LLPLLGLD---------- 213 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTEEEEECEEEE--GGGHHH-HHHTTTTS----------
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccccccccceeEeccccccee-eeeccccc----------
Confidence 4688889999999999999999999999987 7777799998889999999999998655 55443211
Q ss_pred ccceeEEEEEEEeccCCCCCCCCceeeccC-CCccceeeeccccccccCCCCCeEEEEEecC-----CCCCCC-CCHHHH
Q 009646 328 LASIDVVSVKLWFDKKVTVPNVSNACSGFG-DSLAWTFFDLNKIYDEHKDDSATVIQADFYH-----ANELMP-LKDDQV 400 (530)
Q Consensus 328 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~eei 400 (530)
+...+.....+.++................ ......++- +..+.++...... ...... ..+.++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------p~~g~~~ig~~~~~~~~~~~~~~~~~~~~~~ 284 (358)
T PF01266_consen 214 LPLRPVRGQVLVLEPPESPLAPAILFPPVIFGPSDGVYIR---------PRPGGVLIGTADGNYDPGPSPEDSSGEDPDV 284 (358)
T ss_dssp STEEEEEEEEEEEEGCCSGSSSEEEEEEECESSCTEEEEE---------EETTEEEEEESECEEEESSSHHHHSHHHHHH
T ss_pred ccccccceEEEEEccCCcccccccccccccccccccceec---------ccccccccccccccccccccccccccccccc
Confidence 122233333444543322111110001000 000011110 1113333221110 000000 001112
Q ss_pred ---HHHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHH
Q 009646 401 ---VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGL 477 (530)
Q Consensus 401 ---~~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~ 477 (530)
.+.+++.+.+++|.+....+...+. +...++++..... ...+..+|+|+++.+.+. ++..|...|+
T Consensus 285 ~~~~~~l~~~~~~~~p~l~~~~v~~~~~-----g~r~~t~d~~p~i-g~~~~~~~l~~~~g~~~~-----G~~~a~~~a~ 353 (358)
T PF01266_consen 285 DEEIDELLERLARLLPGLGDAEVVRSWA-----GIRPFTPDGRPII-GELPGSPNLYLAGGHGGH-----GFTLAPGLAE 353 (358)
T ss_dssp HHHHHHHHHHHHHHSGGGGGSEEEEEEE-----EEEEEETTSECEE-EEESSEEEEEEEECETTC-----HHHHHHHHHH
T ss_pred cHHHHHhHHHHHHHHHHhhhcccccccc-----ceeeeccCCCeee-eecCCCCCEEEEECCCch-----HHHHHHHHHH
Confidence 5688999999999876544443322 2333344432110 112346899999877743 3556777888
Q ss_pred HHHHH
Q 009646 478 EAANR 482 (530)
Q Consensus 478 ~aA~~ 482 (530)
.+|+.
T Consensus 354 ~~a~~ 358 (358)
T PF01266_consen 354 LLADL 358 (358)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77763
No 39
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.63 E-value=1.1e-13 Score=139.87 Aligned_cols=199 Identities=13% Similarity=0.146 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccc
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 328 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l 328 (530)
.+...|.+.+.+.|++++.+++|++|+..+ ++.+..|.++++++.++.||+|++.+... +....... +
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~~g~i~a~~vVvaagg~~~~-l~~~~g~~----------~ 251 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRD-GGRVIGVETTRGFIGAKKVGVAVAGHSSV-VAAMAGFR----------L 251 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeCCceEECCEEEECCChhhHH-HHHHcCCC----------C
Confidence 355567777888999999999999998643 25666788877789999999999988643 22111000 0
Q ss_pred cceeEEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecC-CCCCCCCCHHHHHHHHHHH
Q 009646 329 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH-ANELMPLKDDQVVAKAVSY 407 (530)
Q Consensus 329 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~eei~~~~l~~ 407 (530)
...+.. ..+.+..+.. +....++.. . .. ..++-. ..++.++...-.. ...+....+.+..+.+++.
T Consensus 252 ~~~~~~-~~~~~~~~~~-~~~~~~~~~-~-~~-~~y~~p--------~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~ 318 (407)
T TIGR01373 252 PIESHP-LQALVSEPLK-PIIDTVVMS-N-AV-HFYVSQ--------SDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAA 318 (407)
T ss_pred CcCccc-ceEEEecCCC-CCcCCeEEe-C-CC-ceEEEE--------cCCceEEEecCCCCCCccCcCCCHHHHHHHHHH
Confidence 100110 0111111211 000111110 0 00 111110 1223333221111 1111122345677888999
Q ss_pred HhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCC-CCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHHH
Q 009646 408 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 485 (530)
Q Consensus 408 L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~-~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~ 485 (530)
+.++||.+....+... | .+...++|+.. |.+ ..+.+|+|++..+.+.|+ -.|...|+.+|+.|+.
T Consensus 319 ~~~~~P~l~~~~~~~~----w-~G~~~~t~D~~---PiIg~~~~~gl~~a~G~~g~G~-----~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 319 ILEMFPILSRVRMLRS----W-GGIVDVTPDGS---PIIGKTPLPNLYLNCGWGTGGF-----KATPASGTVFAHTLAR 384 (407)
T ss_pred HHHhCCCcCCCCeEEE----e-ccccccCCCCC---ceeCCCCCCCeEEEeccCCcch-----hhchHHHHHHHHHHhC
Confidence 9999998764333222 2 33444555543 222 123589999998885444 3467789999998873
No 40
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.63 E-value=2.3e-14 Score=146.44 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 307 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~ 307 (530)
.++..|.+.+++.|++|+.+++|++|+.. +. +.|.++++++.||.||+|++.+..
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~---~~-~~v~t~~g~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEEG---QP-AVVRTPDGQVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEeeC---Cc-eEEEeCCcEEECCEEEEccccccc
Confidence 56778888888999999999999999753 22 356777778999999999998854
No 41
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.57 E-value=5.1e-12 Score=126.66 Aligned_cols=204 Identities=12% Similarity=0.104 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccc
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 328 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l 328 (530)
.+...|.+.+++.|++++.+++|++|+.++ +.+ .|.++++++.||.||+|+|.+... +...... .+
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~-~v~~~~~~i~a~~vV~aaG~~~~~-l~~~~g~----------~~ 211 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTE--LLV-TVKTTKGSYQANKLVVTAGAWTSK-LLSPLGI----------EI 211 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeE-EEEeCCCEEEeCEEEEecCcchHH-Hhhhccc----------CC
Confidence 466677777888899999999999998865 544 466666689999999999987543 3322100 01
Q ss_pred cceeEEEEEEEeccCCCCC----CCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCC-------CCCCCCCH
Q 009646 329 ASIDVVSVKLWFDKKVTVP----NVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHA-------NELMPLKD 397 (530)
Q Consensus 329 ~~~~~~~v~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 397 (530)
...++....+.+..+.... .....+...... .. ++.... ....+.++ ...... ..+....+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~-~y~~p~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 283 (380)
T TIGR01377 212 PLQPLRINVCYWREKEPGSYGVSQAFPCFLVLGLN-PH-IYGLPS-----FEYPGLMK-VYYHHGQQIDPDERDCPFGAD 283 (380)
T ss_pred CceEEEEEEEEEecCCccccCccCCCCEEEEeCCC-Cc-eEecCC-----CCCCceEE-EEeCCCCccCcccccCCCCCC
Confidence 1111111011122111000 000001000000 01 110000 00112222 211111 11111234
Q ss_pred HHHHHHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHH
Q 009646 398 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGL 477 (530)
Q Consensus 398 eei~~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~ 477 (530)
.+..+.+.+.+.+.+|.+... .... | .+...++|+.... -+.....+|||++..+.+.|+. -+...|+
T Consensus 284 ~~~~~~l~~~~~~~~P~l~~~-~~~~----~-~~~~~~t~D~~pi-Ig~~p~~~~l~va~G~~g~G~~-----~~p~~g~ 351 (380)
T TIGR01377 284 IEDVQILRKFVRDHLPGLNGE-PKKG----E-VCMYTNTPDEHFV-IDLHPKYDNVVIGAGFSGHGFK-----LAPVVGK 351 (380)
T ss_pred HHHHHHHHHHHHHHCCCCCCC-ccee----e-EEEeccCCCCCee-eecCCCCCCEEEEecCCcccee-----ccHHHHH
Confidence 567888899999999988632 2211 1 2233456654211 1223456899999988865543 3667899
Q ss_pred HHHHHHHHH
Q 009646 478 EAANRVVDY 486 (530)
Q Consensus 478 ~aA~~il~~ 486 (530)
.+|+.|+..
T Consensus 352 ~la~li~~~ 360 (380)
T TIGR01377 352 ILAELAMKL 360 (380)
T ss_pred HHHHHHhcC
Confidence 999998743
No 42
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.56 E-value=3.4e-12 Score=129.13 Aligned_cols=200 Identities=16% Similarity=0.092 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEE-EEECC----eeEecCEEEEccChhhHHHhhhhccccChHHHH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVCGK----ETYSAGAVVLAVGISTLQELIKNSILCNREEFL 323 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~-v~~~~----~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~ 323 (530)
.+...|.+.+++.|++|+.+++|++|+.++ +.+.. +..++ .+++||.||+|+|.|... +....... .
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~-l~~~~~~~-----~ 269 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRA-LAAMLGDR-----V 269 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChHH-HHHHhCCC-----C
Confidence 456678888888999999999999998765 44432 22322 379999999999998653 33221100 0
Q ss_pred hhccccceeEEEEEEEeccCCCCC-CCCceeeccCCCccceeeeccccccccCCCCCeE-EEEEecCCCCCCCCCHHHHH
Q 009646 324 KVLNLASIDVVSVKLWFDKKVTVP-NVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATV-IQADFYHANELMPLKDDQVV 401 (530)
Q Consensus 324 ~~~~l~~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~eei~ 401 (530)
.+..+... .+.+.+....... .+...+ .+ .... +.. . ....+.+ +..+... .........+..
T Consensus 270 ~i~p~~g~---~~~~~~~~~~~~~~~p~~~~--~~-~~~~-~~~-~------~~~~~~~~igg~~~~-~~~~~~~~~~~~ 334 (410)
T PRK12409 270 NVYPVKGY---SITVNLDDEASRAAAPWVSL--LD-DSAK-IVT-S------RLGADRFRVAGTAEF-NGYNRDIRADRI 334 (410)
T ss_pred ccccCCce---EEEeecCCccccccCCceee--ee-cCCc-EEE-E------ecCCCcEEEEEEEEe-cCCCCCCCHHHH
Confidence 01111111 0111111111000 011000 00 0001 110 0 0012222 2222111 111122334578
Q ss_pred HHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCCC-CCCCceEEeeccccCCCCCCcchHHHHHHHHHH
Q 009646 402 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 480 (530)
Q Consensus 402 ~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~-~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA 480 (530)
+.+++.+.++||.+....+ ..| .+...++++.. |.+- .+.+|+|++..+.+.| +--|...|+.+|
T Consensus 335 ~~l~~~~~~~~P~l~~~~~-----~~w-~G~r~~t~D~~---PiiG~~~~~~l~~~~G~~~~G-----~~~ap~~g~~lA 400 (410)
T PRK12409 335 RPLVDWVRRNFPDVSTRRV-----VPW-AGLRPMMPNMM---PRVGRGRRPGVFYNTGHGHLG-----WTLSAATADLVA 400 (410)
T ss_pred HHHHHHHHHhCCCCCcccc-----cee-cccCCCCCCCC---CeeCCCCCCCEEEecCCcccc-----hhhcccHHHHHH
Confidence 8889999999998864332 123 33334455432 2221 2358999888765433 345777888888
Q ss_pred HHHHH
Q 009646 481 NRVVD 485 (530)
Q Consensus 481 ~~il~ 485 (530)
+.|+.
T Consensus 401 ~~i~~ 405 (410)
T PRK12409 401 QVVAQ 405 (410)
T ss_pred HHHcC
Confidence 88863
No 43
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.55 E-value=9.4e-14 Score=137.25 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=45.0
Q ss_pred EeecCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChh
Q 009646 240 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 305 (530)
Q Consensus 240 ~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~ 305 (530)
.||.......+++.|.+.++++|++|+++++|++|+.++ +.+..|.+ +++++.||.||+|+|..
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEETTTEEEEESEEEE----S
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeeccCcccccCCEEEEecCCC
Confidence 344443445688889999999999999999999999886 66678888 78899999999999853
No 44
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.54 E-value=3.9e-12 Score=135.83 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCe-eEecCEEEEccChhhH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGISTL 307 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~-~~~ad~VV~a~~~~~~ 307 (530)
.++..|.+.+.+ |++|+.+++|++|+.++ +.+. |.++++ .+.||.||+|+|.+..
T Consensus 409 ~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~-v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 409 ELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQ-LDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEE-EEECCCcEEECCEEEECCCCCcc
Confidence 577788888888 99999999999998876 5544 666654 5689999999999864
No 45
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.53 E-value=1.6e-11 Score=122.96 Aligned_cols=199 Identities=17% Similarity=0.131 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccc
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 328 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l 328 (530)
.+...+.+.+.+.|++++++++|++|..++ +.+ .|.++++++.||.||+|+|.+... +++... +
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~~~~-l~~~~~------------~ 213 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEADG--DGV-TVTTADGTYEAKKLVVSAGAWVKD-LLPPLE------------L 213 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeE-EEEeCCCEEEeeEEEEecCcchhh-hccccc------------C
Confidence 455567777778899999999999999876 443 566766689999999999988644 443211 1
Q ss_pred cceeEEEEEEEeccCCCC--CCCCceeeccCCCccceeeeccccccccCCCCCe-EEEEEecC------CCCC-CCCCHH
Q 009646 329 ASIDVVSVKLWFDKKVTV--PNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSAT-VIQADFYH------ANEL-MPLKDD 398 (530)
Q Consensus 329 ~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~-~~~~~e 398 (530)
...+.....+.++.+... ......+...... +..++-.. ..++. ++...... +... ...+.+
T Consensus 214 ~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~y~~p-------~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~ 285 (376)
T PRK11259 214 PLTPVRQVLAWFQADGRYSEPNRFPAFIWEVPD-GDQYYGFP-------AENGPGLKIGKHNGGQEITSPDERDRFVTVA 285 (376)
T ss_pred CceEEEEEEEEEecCCccCCccCCCEEEEecCC-CceeEecc-------CCCCCceEEEECCCCCCCCChhhccCCCCcH
Confidence 111111112223221100 0000011100000 00011000 11222 33222111 0000 112235
Q ss_pred HHHHHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCC--CCCCCceEEeeccccCCCCCCcchHHHHHH
Q 009646 399 QVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG--FTSFPNLFMAGDWITTRHGSWSQERSYVTG 476 (530)
Q Consensus 399 ei~~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~--~~~~~~l~~aG~~~~~g~~~~~iega~~sG 476 (530)
+..+.+++.+.++||.+.. +... | .+...++|+.. |.+ ....+|+|++..+.+.|+ --+...|
T Consensus 286 ~~~~~l~~~~~~~~P~~~~--~~~~----~-~g~~~~t~D~~---P~ig~~~~~~gl~~~~G~~g~G~-----~~ap~~g 350 (376)
T PRK11259 286 EDGAELRPFLRNYLPGVGP--CLRG----A-ACTYTNTPDEH---FIIDTLPGHPNVLVASGCSGHGF-----KFASVLG 350 (376)
T ss_pred HHHHHHHHHHHHHCCCCCc--cccc----e-EEecccCCCCC---ceeecCCCCCCEEEEecccchhh-----hccHHHH
Confidence 6788899999999997653 3222 1 22223455432 322 234689999999885444 3477789
Q ss_pred HHHHHHHHHH
Q 009646 477 LEAANRVVDY 486 (530)
Q Consensus 477 ~~aA~~il~~ 486 (530)
+.+|+.|+..
T Consensus 351 ~~la~li~~~ 360 (376)
T PRK11259 351 EILADLAQDG 360 (376)
T ss_pred HHHHHHHhcC
Confidence 9999998853
No 46
>PRK10015 oxidoreductase; Provisional
Probab=99.52 E-value=1.4e-11 Score=124.30 Aligned_cols=52 Identities=25% Similarity=0.469 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhh
Q 009646 253 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 306 (530)
Q Consensus 253 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~ 306 (530)
.|.+.+++.|++++.+++|+.|..++ +++..+.++++++.|+.||.|.|...
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 113 WLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcch
Confidence 36666677899999999999998775 66767777777899999999999753
No 47
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.52 E-value=1.3e-12 Score=119.35 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCe-eEecCEEEEccChhhHHHhhhh
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGISTLQELIKN 313 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~-~~~ad~VV~a~~~~~~~~ll~~ 313 (530)
-...+...++++|+.|+.+..|+.+...++++..+.|.+..+ .+.|+.+|+|+|+|..+ +|+.
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcCc
Confidence 455677888999999999999999986554465667777654 69999999999999987 6664
No 48
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.51 E-value=8.1e-12 Score=126.21 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhh
Q 009646 253 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 306 (530)
Q Consensus 253 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~ 306 (530)
.|.+.+++.|++|+.+++|++|..++ +.++.+.++++++.|+.||.|.|.+.
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 113 WLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 36666677899999999999998776 66666777777899999999999764
No 49
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.50 E-value=4.9e-12 Score=123.39 Aligned_cols=228 Identities=14% Similarity=0.117 Sum_probs=123.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc----cccc----------cccccHHHHHHHhC-CCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD----ISFW----------YPFRNIFSLVDELG-IKPFTG 111 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~----~g~~----------~~~~~~~~~~~~lg-~~~~~~ 111 (530)
++||+|||||++||++|++|++.|.+|+|+|+++++||... .++. ...+.+.+++.++. ...
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~~~--- 77 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFFELNN--- 77 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhccccc---
Confidence 37999999999999999999999999999999999999721 2211 12233455555542 221
Q ss_pred cccceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhh-hhccchhHHHhhhccCcchhhhcccCccHHHHH--
Q 009646 112 WMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVD-RLTSLPLMAAVIDFDNTDVAWRKYDSITARELF-- 188 (530)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-- 188 (530)
+........+|... +.++.. +.+..+.... .......+....... ......++++|.
T Consensus 78 ~~~~~~~~~~g~~~-----------~~P~~~---~~i~~l~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~e~~d~ 137 (377)
T TIGR00031 78 YQHRVLALYNNLDL-----------TLPFNF---NQFRKLLGVKDAQELQNFFNAQFKYG------DHVPLEELQEIADP 137 (377)
T ss_pred eeEEEEEEECCeEE-----------ccCCCH---HHHHHhcccchHHHHHHHHHHHhhcc------cCCCCCCHHHHHHH
Confidence 11111212222211 112211 1111111000 001111111111000 001113345544
Q ss_pred -HHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhh--cCcceeEeecCCCcchhHHHHHHHHHhcCCEE
Q 009646 189 -KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH--QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 265 (530)
Q Consensus 189 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~--~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i 265 (530)
.+ .+++.+.+.++.++....|+.++.++++.+.......+.... ....-..+|++| .+.+.+.|+ ...+++|
T Consensus 138 ~~~-~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~G-yt~~~~~ml---~~~~i~v 212 (377)
T TIGR00031 138 DIQ-LLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGG-YTKLFEKML---DHPLIDV 212 (377)
T ss_pred HHH-HHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCccccccccccccc-HHHHHHHHH---hcCCCEE
Confidence 33 245889999999999999999999999987542221111000 111123456665 445554444 5568999
Q ss_pred EcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHH
Q 009646 266 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 266 ~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~ 308 (530)
++|+.+..++.++ ++ +...++.+. +.||.|.|...+-
T Consensus 213 ~l~~~~~~~~~~~--~~---~~~~~~~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 213 KLNCHINLLKDKD--SQ---LHFANKAIR-KPVIYTGLIDQLF 249 (377)
T ss_pred EeCCccceeeccc--cc---eeecccccc-CcEEEecCchHHH
Confidence 9999888887544 32 322333333 8899987766544
No 50
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.49 E-value=3e-11 Score=121.47 Aligned_cols=207 Identities=14% Similarity=0.049 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHhcC-CEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhcc
Q 009646 249 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 327 (530)
Q Consensus 249 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~ 327 (530)
.++..+.+.+.++| ..+..+++|+.+..+ . +.+.|.++++++.||+||+|++.+... +..... ...
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~i~a~~vv~a~G~~~~~-l~~~~~---------~~~ 223 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGTIEADKVVLAAGAWAGE-LAATLG---------ELP 223 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCccEEeCEEEEcCchHHHH-HHHhcC---------CCc
Confidence 56778888889999 566669999999875 1 346788887779999999999998655 322211 001
Q ss_pred ccceeEEEEEEEeccCCCC-CCCCc-eeeccCCCccceeeeccccccccCCCCCeEE-EEEecCC-CCCCCCCHHH-HHH
Q 009646 328 LASIDVVSVKLWFDKKVTV-PNVSN-ACSGFGDSLAWTFFDLNKIYDEHKDDSATVI-QADFYHA-NELMPLKDDQ-VVA 402 (530)
Q Consensus 328 l~~~~~~~v~l~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ee-i~~ 402 (530)
+...+...-.+.+...-.. ..... ... ........+.. ..++.++ ....... +.......++ ...
T Consensus 224 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~---------~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 293 (387)
T COG0665 224 LPLRPVRGQALTTEPPEGLLADGLAPVVL-VVDDGGGYIRP---------RGDGRLRVGGTDEEGGDDPSDPEREDLVIA 293 (387)
T ss_pred CccccccceEEEecCCCccccccccceEE-EecCCceEEEE---------cCCCcEEEeecccccCCCCccccCcchhHH
Confidence 1111111111112111100 00000 000 00011111111 0123222 2211111 0111111122 567
Q ss_pred HHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCCCCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHH
Q 009646 403 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR 482 (530)
Q Consensus 403 ~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~ 482 (530)
.+++.+.+++|.+.+..+... |.+..+..+|+.....-.... .+|+|++..+.+.|+. -+...|+.+|+.
T Consensus 294 ~l~~~~~~~~P~l~~~~~~~~----w~g~~~~t~pd~~P~iG~~~~-~~~l~~a~G~~~~G~~-----~~p~~g~~lA~l 363 (387)
T COG0665 294 ELLRVARALLPGLADAGIEAA----WAGLRPPTTPDGLPVIGRAAP-LPNLYVATGHGGHGFT-----LAPALGRLLADL 363 (387)
T ss_pred HHHHHHHHhCcccccccccee----eeccccCCCCCCCceeCCCCC-CCCEEEEecCCCcChh-----hccHHHHHHHHH
Confidence 899999999998765444442 333333233554322111223 7899999999855443 466789999999
Q ss_pred HHHHhC
Q 009646 483 VVDYLG 488 (530)
Q Consensus 483 il~~~~ 488 (530)
|+..-.
T Consensus 364 i~g~~~ 369 (387)
T COG0665 364 ILGGEP 369 (387)
T ss_pred HcCCCC
Confidence 985443
No 51
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.46 E-value=3e-11 Score=121.07 Aligned_cols=55 Identities=24% Similarity=0.351 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhH
Q 009646 252 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 307 (530)
Q Consensus 252 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~ 307 (530)
+.|++..++.|++++.+++|+.+..++ ++.++++..++.+++|+.||.|.|....
T Consensus 99 ~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 99 KWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred HHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 347777888999999999999999987 5665556555679999999999997644
No 52
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.45 E-value=1.3e-11 Score=123.19 Aligned_cols=57 Identities=23% Similarity=0.183 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECC----e--eEecCEEEEccChhhHH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK----E--TYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~----~--~~~ad~VV~a~~~~~~~ 308 (530)
+|+-..+..+.++|.+++..++|+++..++ + +++|...+ + +++|+.||.|+|+|.-.
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 566667777788999999999999999987 6 77887653 2 68999999999999766
No 53
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.44 E-value=1.4e-10 Score=120.60 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CC--eeEecCEEEEccChhhHH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~--~~~~ad~VV~a~~~~~~~ 308 (530)
+++..+...+.++|++|+++++|++|..++ +++++|.+ ++ .++.|+.||+|+|+|.-.
T Consensus 150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~ 213 (546)
T PRK11101 150 RLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQH 213 (546)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhHHH
Confidence 566677777888999999999999999876 66666654 22 479999999999999644
No 54
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.42 E-value=8.2e-11 Score=113.52 Aligned_cols=55 Identities=24% Similarity=0.189 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEE-EEEECCeeEecCEEEEccChhh
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCGKETYSAGAVVLAVGIST 306 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~-~v~~~~~~~~ad~VV~a~~~~~ 306 (530)
+.+.|.+.+.+.|++++++++|+++..++ +.+. .+..+++++++|.||.|.|.+.
T Consensus 93 l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 93 FDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcCccEEEEeCEEEECCCcch
Confidence 44557777778899999999999998876 4432 2333346899999999999864
No 55
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.41 E-value=1.4e-10 Score=116.50 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~ 306 (530)
..+.+.|.+.+++.|++|+++++|++|+.++ +.+ .|.++++++.||.||+|+|.+.
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEECCCEEEeCEEEECCCcch
Confidence 4577888888888999999999999998765 444 5666666899999999999885
No 56
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.40 E-value=1.2e-10 Score=120.24 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=38.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
..++||+|||||+.|+++|+.|+++|.+|+|||+++..+|..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS 45 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTS 45 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCc
Confidence 456999999999999999999999999999999998777763
No 57
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.38 E-value=8e-11 Score=116.13 Aligned_cols=243 Identities=17% Similarity=0.248 Sum_probs=144.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc------------cc-------------c--------c
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD------------IS-------------F--------W 91 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~------------~g-------------~--------~ 91 (530)
+..|||||+|.|+.-...|..|++.|.+|+.+|++++-||.+. .. | .
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 4569999999999999999999999999999999999999821 00 0 0
Q ss_pred cccccHHHHHHHhCCCCCCCcccc-eee-ccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhc
Q 009646 92 YPFRNIFSLVDELGIKPFTGWMKS-AQY-SEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDF 169 (530)
Q Consensus 92 ~~~~~~~~~~~~lg~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (530)
+....+.+++-+-++..+..|... .++ ..++. ...+|..-...+ .-+.+++.++..+.+.+....++
T Consensus 82 ~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~---------l~kVP~sr~dvf--~s~~lsl~eKR~lmkFl~~v~~~ 150 (438)
T PF00996_consen 82 YARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGK---------LHKVPCSREDVF--KSKLLSLFEKRRLMKFLKFVANY 150 (438)
T ss_dssp ETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTE---------EEE--SSHHHHH--C-TTS-HHHHHHHHHHHHHHHHG
T ss_pred hccCHHHHHHHhCCcccceEEEEcceeEEEeCCE---------EeeCCCCHHHhh--cCCCccHHHHHHHHHHHHHHhhc
Confidence 112345555555565544444321 111 11111 112333222221 22456677777777766666665
Q ss_pred cCcch-hhhc--ccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHH--hhcCcceeEeecC
Q 009646 170 DNTDV-AWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRG 244 (530)
Q Consensus 170 ~~~~~-~~~~--~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~--~~~~~~~~~~~~g 244 (530)
..... .+.. ....++.++++.+++++...+-+...+... ......+.++...+..++.+.. +.++.....+|.-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~-~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~Y 229 (438)
T PF00996_consen 151 EEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAIALS-LDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLY 229 (438)
T ss_dssp CTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-S-SSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT
T ss_pred ccCCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhhhhc-cCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEcc
Confidence 44322 2332 346789999999999987544433222111 1111112234455555655542 3344556678886
Q ss_pred CCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEc
Q 009646 245 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 301 (530)
Q Consensus 245 g~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a 301 (530)
|.+ .|.+.+.+...-.|+.+.++++|.+|..++ +|++.+|.++++++.|+.||..
T Consensus 230 G~G-ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 230 GLG-ELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp -TT-HHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEEETTEEEEESEEEEE
T ss_pred CCc-cHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEecCCEEEEcCEEEEC
Confidence 654 699999988888899999999999999876 5888899999999999999963
No 58
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.38 E-value=2.4e-10 Score=114.87 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhh
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 306 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~ 306 (530)
+.+.|.+.+++.|++++++++|++++.++ +.+. +.. +++++.||.||.|.|.+.
T Consensus 115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 115 LVDRLWAALHAAGVQLHCPARVVALEQDA--DRVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 55667777788899999999999999876 4443 444 456899999999999875
No 59
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.38 E-value=1.8e-10 Score=118.81 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
..+||+|||||+.|+++|+.|+++|.+|+|+|+++..+|..
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 46999999999999999999999999999999998877763
No 60
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.35 E-value=2.6e-10 Score=120.02 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhhHH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~~~ 308 (530)
.+++..+.+.+.+.|++|+.+++|++|..++.++++++|.. +++ ++.|+.||+|+|+|.-.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~ 298 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDE 298 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHH
Confidence 36777888888999999999999999987620155555543 343 68999999999999543
No 61
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=99.35 E-value=9.2e-11 Score=108.63 Aligned_cols=450 Identities=15% Similarity=0.142 Sum_probs=213.3
Q ss_pred cCCcCccCCccccCCCCCCCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEcCCCCCCCCcc------ccccc-----
Q 009646 28 TLQSNANGDRNSTNNNGKNKKKIVVVGSGWAGLGAAHHLSKQ----GFDVTVLDDGNGFGSPDD------ISFWY----- 92 (530)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~dVvIIGaG~aGL~aA~~La~~----G~~V~vlE~~~~~GG~~~------~g~~~----- 92 (530)
+.+.++++++...+.+ -..+.+-|||+|+|||++|..|.+. |.+|.|+|.-+..||..| +||+.
T Consensus 4 t~Gnyeafa~pkkpE~-VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRe 82 (587)
T COG4716 4 TIGNYEAFAEPKKPEN-VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGRE 82 (587)
T ss_pred ecccHHHhcCccCccc-cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHH
Confidence 3455665555443332 2346799999999999999999886 569999999999999966 67764
Q ss_pred ---ccccHHHHHHHh-CCC--CCCCcccceeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHh
Q 009646 93 ---PFRNIFSLVDEL-GIK--PFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAV 166 (530)
Q Consensus 93 ---~~~~~~~~~~~l-g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (530)
++.+++++++.. .++ .....++-..+..+. |-..+..-+........-...-.+...+......++
T Consensus 83 mEnhfEc~WDlfrsIPSLei~naSvldEfy~~d~~d-----Pn~s~cRli~k~g~rv~ddg~~tl~~~~~~ei~kL~--- 154 (587)
T COG4716 83 MENHFECLWDLFRSIPSLEIPNASVLDEFYWLDKDD-----PNSSNCRLIHKRGRRVDDDGSFTLNNKARKEIIKLL--- 154 (587)
T ss_pred HHHHHHHHHHHHhcCccccCCCcHHHHHHHhccCCC-----CCccceeeeeccccccccccccccChhhHHHHHHHH---
Confidence 245566666654 222 111111111111110 000000000000000000000011111111111111
Q ss_pred hhccCcchhhhcccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCc---ceeEeec
Q 009646 167 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKN---FDLVWCR 243 (530)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~---~~~~~~~ 243 (530)
. .+-+.+++.++++|+...-+...+.- +|..++.-- .-.|+.....-+..+...-.+- ..+.+.+
T Consensus 155 ~------t~EE~L~~~tI~d~Fse~FF~sNFW~-yW~tmFAFe-----kWhSa~EmRRY~mRfihhi~gl~dfs~lkftk 222 (587)
T COG4716 155 M------TPEEKLDDLTIEDWFSEDFFKSNFWY-YWQTMFAFE-----KWHSAFEMRRYMMRFIHHISGLPDFSALKFTK 222 (587)
T ss_pred c------CcHHhcCCccHHHhhhHhhhhhhHHH-HHHHHHhhh-----HHHHHHHHHHHHHHHHHHhcCCCcchhhcccc
Confidence 1 11245688899999987555544322 222222110 1122222222222221111111 1223444
Q ss_pred CCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEE----EEEECCee--Ee-cCEEEEccChhhHHHhhhhc--
Q 009646 244 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS----DVVCGKET--YS-AGAVVLAVGISTLQELIKNS-- 314 (530)
Q Consensus 244 gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~----~v~~~~~~--~~-ad~VV~a~~~~~~~~ll~~~-- 314 (530)
-+.++.|+.++...|.++|+++.++++|+.|+.+...|+.+ .|..+++. +. -|.|+++-+.-+-..-.++.
T Consensus 223 yNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsiTeSsT~Gd~~t 302 (587)
T COG4716 223 YNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSITESSTYGDMNT 302 (587)
T ss_pred cchHHHHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEecceeccccccCCCCC
Confidence 55678899999999999999999999999999876334211 12233333 33 35677665543222222221
Q ss_pred ccc-------ChHHHHh----hccccce-----------eEEEEEEEeccCCCCCC-----CCceeeccC--------CC
Q 009646 315 ILC-------NREEFLK----VLNLASI-----------DVVSVKLWFDKKVTVPN-----VSNACSGFG--------DS 359 (530)
Q Consensus 315 ~~~-------~~~~~~~----~~~l~~~-----------~~~~v~l~~~~~~~~~~-----~~~~~~~~~--------~~ 359 (530)
+.+ .+..+.+ ...++.. ++.......+.+-..+. ......|.. ..
T Consensus 303 pAp~t~elggSw~LW~nlA~qs~~fGnP~~F~~~~p~~sW~vSaTvT~~~~ki~~~iEr~t~rd~~~Gkv~tGgiiTikD 382 (587)
T COG4716 303 PAPKTEELGGSWELWYNLAQQSPEFGNPDVFCQHIPKESWFVSATVTCKNDKILPYIERLTHRDLIPGKVVTGGIITIKD 382 (587)
T ss_pred CCCChhhcCCcHHHHHHHHhcCcccCCCchhhccCccccceEEEEEEecCchHHHHHHHHhCCCCCCCcccccceEEEec
Confidence 111 0111111 1122211 12233333333321110 000011100 01
Q ss_pred ccceeeeccccccccCCCCC--eEE-EEEecC-------CCCCCCCCHHHHHHHHHHHHhHhhc---CCCCCccccceEE
Q 009646 360 LAWTFFDLNKIYDEHKDDSA--TVI-QADFYH-------ANELMPLKDDQVVAKAVSYLSKCIK---DFSTATVMDHKIR 426 (530)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~-------~~~~~~~~~eei~~~~l~~L~~~~p---~~~~~~i~~~~~~ 426 (530)
..|.+.-.....+.|..++. +++ ....|. .++..+++.+||.++++-+|.---. ++.. .+...-..
T Consensus 383 SnWlmSf~i~rQphFK~Q~~net~~WiYgLysd~~GdyvkKpi~eCtGeEI~~E~lyHLg~~~d~ie~l~~-~~iNtiPv 461 (587)
T COG4716 383 SNWLMSFTIHRQPHFKEQDENETITWIYGLYSDRVGDYVKKPIEECTGEEITQELLYHLGVPTDKIEDLAK-DIINTIPV 461 (587)
T ss_pred cchhhhhhhhcCccccccCCCceEEEEEeeccCCCcchhcCchhhcCHHHHHHHHHHHcCCCHHHHHHHHH-hcccccce
Confidence 12322111122333433332 222 222232 2456678899999998887743321 2221 22222222
Q ss_pred eCCCCceecCCCCcccCCCCCC-CCCceEEeeccccCCCC-CCcchHHHHHHHHHHHHHHHHhCCCCccccccCCCC
Q 009646 427 RFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHG-SWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEED 501 (530)
Q Consensus 427 ~~~~a~~~~~~g~~~~~~~~~~-~~~~l~~aG~~~~~g~~-~~~iega~~sG~~aA~~il~~~~~~~~~~~~~~~~~ 501 (530)
..|+-...+.|..-..||...+ .--||-|.|.+...... +.+.|.+++++++|+-++|+--. ...++.+--.|
T Consensus 462 YMPyItsyFm~Ra~gDRP~VvPe~S~NlafignFaEt~rDtVFTtEYSvRtAmeAVY~lLnidr--gipeV~~s~~D 536 (587)
T COG4716 462 YMPYITSYFMPRAMGDRPLVVPEGSVNLAFIGNFAETERDTVFTTEYSVRTAMEAVYQLLNIDR--GIPEVTNSAYD 536 (587)
T ss_pred eehhhhhhhcccccCCCceecCCCceehHHhhhhccccccceeeeehhHHHHHHHHHHHHhccc--CCCcccccccC
Confidence 2444444444443334555432 23588999988865222 26889999999999999997665 44455553333
No 62
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.34 E-value=2.8e-11 Score=118.45 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-Cee-EecCEEEEccChhhHH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KET-YSAGAVVLAVGISTLQ 308 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~-~~ad~VV~a~~~~~~~ 308 (530)
.+..++++.++++|++|++|++|+.|+..+ +| ++.+.+. |++ ++|+.||.|+|.....
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 477789999999999999999999999987 44 3344444 444 9999999999987655
No 63
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.33 E-value=2.1e-10 Score=114.27 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhc-CCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhh
Q 009646 249 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 312 (530)
Q Consensus 249 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~ 312 (530)
.+...|.+.+.+. |++|+.+++|++|+. + .|.++++++.||.||+|+|.+... +++
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~---~v~t~~g~i~a~~VV~A~G~~s~~-l~~ 202 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVET----G---TVRTSRGDVHADQVFVCPGADFET-LFP 202 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEec----C---eEEeCCCcEEeCEEEECCCCChhh-hCc
Confidence 4666777777665 999999999999953 3 356666678999999999998643 443
No 64
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.32 E-value=4.2e-10 Score=114.18 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=45.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc-cccccccccHHHHHHHhCCC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD-ISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~-~g~~~~~~~~~~~~~~lg~~ 107 (530)
.+.++||+|||||++|+++|..|+++|++|+|+|+.+...-... .++ .-.++..+.++++|+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~-~l~~~~~~~L~~lGl~ 78 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAY-ALSLLSARIFEGIGVW 78 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEE-EechHHHHHHHHCChh
Confidence 34568999999999999999999999999999999875431111 111 1223455666677654
No 65
>PRK06847 hypothetical protein; Provisional
Probab=99.30 E-value=7.8e-10 Score=110.59 Aligned_cols=57 Identities=21% Similarity=0.149 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 307 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~ 307 (530)
.+.+.|.+.+.+.|++|+++++|++|+.++ +.+.....+++++.+|.||.|.|.+..
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 355667777777899999999999998765 444333335668999999999998743
No 66
>PRK06185 hypothetical protein; Provisional
Probab=99.28 E-value=1.3e-09 Score=110.35 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=34.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
...+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3568999999999999999999999999999999754
No 67
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.26 E-value=1.8e-09 Score=108.14 Aligned_cols=58 Identities=28% Similarity=0.390 Sum_probs=45.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC-CCCCCcccc-cccccccHHHHHHHhCC-C
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN-GFGSPDDIS-FWYPFRNIFSLVDELGI-K 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~-~~GG~~~~g-~~~~~~~~~~~~~~lg~-~ 107 (530)
.+||+|||||++||++|..|+++|++|+|+|+.+ .. ...+ ...-.++..++++++|+ +
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~---~~~~r~~~l~~~~~~~L~~lG~~~ 62 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPREL---LERGRGIALSPNALRALERLGLWD 62 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccc---ccCceeeeecHhHHHHHHHcCChh
Confidence 4799999999999999999999999999999971 11 1111 11234567889999998 5
No 68
>PRK07045 putative monooxygenase; Reviewed
Probab=99.26 E-value=3.6e-09 Score=106.19 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=44.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
+.++||+|||||++||++|..|+++|++|+|+|+.+... ...+...-.++..++++++|+.
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~--~~~~~~~l~~~~~~~L~~lGl~ 63 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNR--AQNGADLLKPSGIGVVRAMGLL 63 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCccc--CCCcccccCccHHHHHHHcCCH
Confidence 456899999999999999999999999999999987651 0001111234445566777654
No 69
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.25 E-value=4.2e-11 Score=103.15 Aligned_cols=41 Identities=32% Similarity=0.515 Sum_probs=37.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
..||+|||||++||+|||+|+++|.+|+|+|++..+||=+.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 46999999999999999999999999999999999987543
No 70
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.25 E-value=3.5e-09 Score=107.00 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhH-HHhh
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 311 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~-~~ll 311 (530)
+.+.|.+.+.+.|++|+.+++|++|+.++ +.+. |.. +++++.||.||.|.|.+-. ++++
T Consensus 114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~l 174 (405)
T PRK05714 114 VQDALLERLHDSDIGLLANARLEQMRRSG--DDWL-LTLADGRQLRAPLVVAADGANSAVRRLA 174 (405)
T ss_pred HHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCchhHHhc
Confidence 55667777777899999999999998876 4443 444 4558999999999998744 3444
No 71
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.25 E-value=6.5e-11 Score=110.32 Aligned_cols=41 Identities=34% Similarity=0.510 Sum_probs=37.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
...+||+|||||++||+||+.|+++|++|+|+|+...+||.
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg 63 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG 63 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 34689999999999999999999999999999999888764
No 72
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.24 E-value=4.7e-10 Score=115.84 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE--CC---eeEecCEEEEccChh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK---ETYSAGAVVLAVGIS 305 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~--~~---~~~~ad~VV~a~~~~ 305 (530)
..++..|.+.+++.|++|+++++|++|..++ +++++|.. .+ .++.|+.||+|+|..
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 3578888888889999999999999998765 77766654 22 268999999999855
No 73
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.23 E-value=8.8e-10 Score=111.39 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhh
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 306 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~ 306 (530)
.+.+.|.+.+.+.|++|+++++|++|+.++ +.+. +.. +++++.||.||.|.|.+-
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD--EGVT-VTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEE-EEECCCCEEEeCEEEEcCCCCh
Confidence 366667887888899999999999998876 4443 444 456899999999999764
No 74
>PRK07190 hypothetical protein; Provisional
Probab=99.23 E-value=1.1e-08 Score=104.97 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=44.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
+..+||+|||||++||++|..|+++|.+|+|+||.+.+.-. .++ ..-.+...++++.+|+-
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~-gra-~~l~~~tle~L~~lGl~ 63 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEV-GRA-DALNARTLQLLELVDLF 63 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCccccc-ccc-eEeCHHHHHHHHhcChH
Confidence 45589999999999999999999999999999998765311 111 11234456667777653
No 75
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.23 E-value=2.7e-09 Score=107.16 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=44.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC---cccccccccccHHHHHHHhCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP---DDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~---~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
||+|||||++||++|+.|+++|++|+|+|+++.++-. .+.....-.++....++++|+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~ 62 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVW 62 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCch
Confidence 7999999999999999999999999999999765311 1111122234566778888875
No 76
>PRK06834 hypothetical protein; Provisional
Probab=99.23 E-value=4.6e-09 Score=107.78 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhH
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 307 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~ 307 (530)
+-+.|.+.+++.|++|+++++|++|+.++ +.+. +.. ++++++||+||.|.|.+-.
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~-v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDD--TGVD-VELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCCC
Confidence 44557777778899999999999999876 4443 444 3558999999999998753
No 77
>PRK08244 hypothetical protein; Provisional
Probab=99.22 E-value=4.8e-09 Score=108.65 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=42.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
++||+|||||++||++|..|+++|++|+|+||.+...-. ..+ ..-.++..++++++|+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~-~ra-~~l~~~~~e~l~~lGl~ 60 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPY-SKA-LTLHPRTLEILDMRGLL 60 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC-cce-eEecHHHHHHHHhcCcH
Confidence 479999999999999999999999999999998653100 011 11223455666666653
No 78
>PRK06184 hypothetical protein; Provisional
Probab=99.22 E-value=2.9e-09 Score=110.45 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=43.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
++||+|||||++||++|..|+++|++|+|+||.+.+.-.. .+. .-.++..++++++|+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~-ra~-~l~~~~~e~l~~lGl~ 61 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGS-RGK-GIQPRTQEVFDDLGVL 61 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCc-cce-eecHHHHHHHHHcCcH
Confidence 5899999999999999999999999999999987553110 111 1124556666777664
No 79
>PLN02463 lycopene beta cyclase
Probab=99.22 E-value=6.4e-09 Score=104.73 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=33.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
...+||+|||||++|+++|+.|+++|++|+|+|+++
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 456899999999999999999999999999999864
No 80
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.21 E-value=3.8e-10 Score=112.01 Aligned_cols=58 Identities=26% Similarity=0.222 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--C--eeEecCEEEEccChhhH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL 307 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~--~~~~ad~VV~a~~~~~~ 307 (530)
.+-+.|.+.+++.|++|+++++|++++.+. ++....+... + ++++||.||-|-|.+-.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~-~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDD-DGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEET-TEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccc-cccccccccccCCceeEEEEeeeecccCcccc
Confidence 355667788888899999999999999887 3322233332 2 27899999999998753
No 81
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.21 E-value=1.1e-09 Score=110.09 Aligned_cols=39 Identities=33% Similarity=0.512 Sum_probs=35.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
.+..+||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 345689999999999999999999999999999998654
No 82
>PLN02697 lycopene epsilon cyclase
Probab=99.21 E-value=1.3e-08 Score=104.25 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEE-EECCeeEecCEEEEccChhh
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDV-VCGKETYSAGAVVLAVGIST 306 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v-~~~~~~~~ad~VV~a~~~~~ 306 (530)
+.+.|.+.+.+.|+++ ++++|++|..++ +.+..+ ..+++++.|+.||.|.|.+.
T Consensus 194 L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 194 LHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 5566777777789998 788999998765 333333 34567899999999999887
No 83
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.20 E-value=5.8e-08 Score=98.37 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=35.1
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 43 ~~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
+...++||+|||||++|++||+.|+++|++|+|+|+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 55677999999999999999999999999999999974
No 84
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.19 E-value=2.8e-11 Score=87.31 Aligned_cols=36 Identities=36% Similarity=0.689 Sum_probs=33.4
Q ss_pred EECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 52 VVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 52 IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
|||||++||++|+.|+++|++|+|+|+++++||+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 899999999999999999999999999999999943
No 85
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.18 E-value=1e-08 Score=103.55 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
.+||+|||||++||++|..|+++|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 589999999999999999999999999999986
No 86
>PRK08013 oxidoreductase; Provisional
Probab=99.18 E-value=1e-08 Score=103.27 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhH
Q 009646 250 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 307 (530)
Q Consensus 250 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~ 307 (530)
+...|.+.+.+. |++++++++|++|+.++ +.+.....++++++||.||-|-|.+-.
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 555577776665 79999999999998876 333322335678999999999997643
No 87
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.18 E-value=2.7e-10 Score=105.72 Aligned_cols=40 Identities=38% Similarity=0.630 Sum_probs=37.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
..+||+|||||++||+||+.|+++|.+|+|+||+..+||.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg 59 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG 59 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 4689999999999999999999999999999999988764
No 88
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.18 E-value=3.8e-10 Score=101.03 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=109.0
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeEEEecCCCCeEEEEEEC-----CeeEecCEEEEccChhhHHHhhhhccccChHHHH
Q 009646 250 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQELIKNSILCNREEFL 323 (530)
Q Consensus 250 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~v~~~-----~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~ 323 (530)
+...++..+++. |+++.++ .|.++..+. +++..+-.. ....+++.+|+++|+|... +++..
T Consensus 149 Fc~~i~sea~k~~~V~lv~G-kv~ev~dEk--~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk-llp~~--------- 215 (380)
T KOG2852|consen 149 FCHFILSEAEKRGGVKLVFG-KVKEVSDEK--HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK-LLPFT--------- 215 (380)
T ss_pred HHHHHHHHHHhhcCeEEEEe-eeEEeeccc--ccccccchhhhcCceEEeeeeEEEEecCCCchh-hcccc---------
Confidence 444566666655 5999998 588887333 555544433 2356788999999999877 55432
Q ss_pred hhccccceeEEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCC-C-----CH
Q 009646 324 KVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMP-L-----KD 397 (530)
Q Consensus 324 ~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~ 397 (530)
++.......+.+....+. -.++.++..+....+-.+.+ ...|+.+++.++.+.-.......+ . .+
T Consensus 216 ---rIsglrihsI~l~~~e~~--v~~~avf~~l~~~~g~ei~~----pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~n 286 (380)
T KOG2852|consen 216 ---RISGLRIHSITLSPGEKP--VGPSAVFCELNTMDGLEICK----PEEYARKDREVYICGETDKEHLLPEDSDDVFVN 286 (380)
T ss_pred ---ccceeeeeeEEecCCCCC--CCCceEEEEEEeCCCccccC----cceeecCCceEEEecCCCccccCCcccccceeC
Confidence 222333333445444442 12333332221111100111 123445666666655333222111 1 12
Q ss_pred HHHHHHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCCC-CCCCceEEeeccccCCCCCCcchHHHHHH
Q 009646 398 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTG 476 (530)
Q Consensus 398 eei~~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~-~~~~~l~~aG~~~~~g~~~~~iega~~sG 476 (530)
.+-++++.+....+.+.+....+. ...+++.++.-. ...|-+- ++ .++|.|..+. +++|..|--+|
T Consensus 287 peki~~Lk~~a~~v~s~l~ks~v~------~~qacfLP~sn~-tg~PvIget~-sg~yVaagHs-----cWGItnaPaTG 353 (380)
T KOG2852|consen 287 PEKIIELKEMADLVSSELTKSNVL------DAQACFLPTSNI-TGIPVIGETK-SGVYVAAGHS-----CWGITNAPATG 353 (380)
T ss_pred HHHHHHHHHHHHHhhhhhccchhh------hhhhccccccCC-CCCceEeecC-CceEEeeccc-----ccceecCcchh
Confidence 233334444444444444332222 223333221111 0123332 22 3788776655 35677788899
Q ss_pred HHHHHHHHHHhCCCCccccccCCCC
Q 009646 477 LEAANRVVDYLGDGSFSKIIPVEED 501 (530)
Q Consensus 477 ~~aA~~il~~~~~~~~~~~~~~~~~ 501 (530)
+..|+.|++... ....+-|++|.
T Consensus 354 ~~mAEllldgea--TSanid~f~p~ 376 (380)
T KOG2852|consen 354 KCMAELLLDGEA--TSANIDPFDPN 376 (380)
T ss_pred HHHHHHHhccce--eeeecCccCcc
Confidence 999999998776 55556666664
No 89
>PRK09126 hypothetical protein; Provisional
Probab=99.17 E-value=7.8e-10 Score=111.29 Aligned_cols=61 Identities=28% Similarity=0.251 Sum_probs=44.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC---cccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP---DDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~---~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
++||+|||||++|+++|..|+++|++|+|+|+.+...-. ..+..+.-.++..+.++++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~ 66 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAW 66 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCCh
Confidence 589999999999999999999999999999998764210 0111111234456677777764
No 90
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.17 E-value=4.4e-08 Score=102.76 Aligned_cols=66 Identities=27% Similarity=0.441 Sum_probs=49.0
Q ss_pred cCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 40 TNNNGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 40 ~~~~~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
++...+.++||+|||||++||++|..|++.|++|+|+|+.+.+... ..+ +.-.++..++++++|+.
T Consensus 16 ~~~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~-~ra-~~l~~~~~~~l~~lGl~ 81 (547)
T PRK08132 16 QDADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTG-SRA-ICFAKRSLEIFDRLGCG 81 (547)
T ss_pred ccCCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCC-CeE-EEEcHHHHHHHHHcCCc
Confidence 3344456789999999999999999999999999999998755321 011 11234567788888876
No 91
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.16 E-value=5.5e-10 Score=113.55 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=48.9
Q ss_pred chhHHHHHHHHHh----cC--CEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHH
Q 009646 248 EKIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 248 ~~l~~~l~~~l~~----~G--~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~ 308 (530)
..+...+.+.+++ .| ++|+++++|++|..++ +..+.|.++++++.||.||+|+|.|...
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~~G~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHTNRGEIRARFVVVSACGYSLL 275 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEECCCEEEeCEEEECcChhHHH
Confidence 3577888888888 77 7899999999999875 4455677777789999999999999765
No 92
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.16 E-value=1.5e-08 Score=106.05 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=43.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
...+||+|||||++||++|..|+++|++|+|+|+.+.+.... .+ +.-.++..+.++++|+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~-ra-~~l~~~~~~~L~~lGl~ 68 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLP-RA-VGIDDEALRVLQAIGLA 68 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCC-ce-eeeCHHHHHHHHHcCCh
Confidence 456899999999999999999999999999999987653210 11 11123345566666654
No 93
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.16 E-value=1.3e-08 Score=102.08 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=41.8
Q ss_pred hHHHHHHHHHh-cCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhh
Q 009646 250 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 306 (530)
Q Consensus 250 l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~ 306 (530)
+.+.|.+.+.+ .|++++++++|++|..++ +.+. +.. +++++.||.||.|.|.+-
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVR-VTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEeeEEEEecCCCh
Confidence 55567777777 499999999999998776 4443 444 456899999999999874
No 94
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.16 E-value=3.6e-08 Score=99.09 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=33.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG 84 (530)
||+|||||++|+++|+.|+++|++|+|+|+++..||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999877665
No 95
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.15 E-value=3.9e-08 Score=98.59 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
|||+|||||++|+++|+.|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 96
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.14 E-value=1.6e-09 Score=111.38 Aligned_cols=57 Identities=26% Similarity=0.234 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-----CeeEecCEEEEccChhh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-----~~~~~ad~VV~a~~~~~ 306 (530)
..+...|.+.+++.|++|+++++|++|..++ +++++|... ...+.|+.||+|+|...
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 4688889988899999999999999999865 777777663 23689999999999653
No 97
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.14 E-value=1.5e-08 Score=101.92 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhc-CCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhH
Q 009646 250 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 307 (530)
Q Consensus 250 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~ 307 (530)
+.+.|.+.+.+. |++++.+++|+++..++ +.+ .|.. ++++++||.||.|.|.+-.
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDD--DGW-ELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeE-EEEECCCCEEEeCEEEEeCCCCch
Confidence 444566666665 99999999999998775 433 3444 4558999999999998754
No 98
>PRK07588 hypothetical protein; Provisional
Probab=99.14 E-value=2.7e-08 Score=100.04 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=41.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCccccc-ccccccHHHHHHHhCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISF-WYPFRNIFSLVDELGIK 107 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~-~~~~~~~~~~~~~lg~~ 107 (530)
+||+|||||++||++|..|+++|++|+|+|+.+.... .|. +.-.++..++++++|+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~g~~~~l~~~~~~~l~~lGl~ 58 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRT---GGYMVDFWGVGYEVAKRMGIT 58 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccC---CCeEEeccCcHHHHHHHcCCH
Confidence 4899999999999999999999999999999865421 111 11123445666777653
No 99
>PRK07121 hypothetical protein; Validated
Probab=99.14 E-value=2.3e-09 Score=110.75 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=47.7
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--Ce--eEec-CEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~--~~~a-d~VV~a~~~~~ 306 (530)
...+...|.+.+++.|++|+++++|++|..++ +|++++|... ++ .+.| +.||+|+|...
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 34688889998999999999999999998875 3677777653 32 5888 99999999765
No 100
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.14 E-value=1.1e-08 Score=102.41 Aligned_cols=61 Identities=33% Similarity=0.427 Sum_probs=43.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC----CCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF----GSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~----GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
.+||+|||||++|+++|..|+++|++|+|+|+.+.. .|..+-....-.++..++++++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~ 67 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAW 67 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCc
Confidence 479999999999999999999999999999987521 1111100012245566777888765
No 101
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.14 E-value=9.6e-09 Score=105.12 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC-CCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN-GFGS 84 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~-~~GG 84 (530)
.+|||||||||.||+.||+.+++.|.+|+|+|++. .+|+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 45999999999999999999999999999999873 5554
No 102
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.13 E-value=2.9e-08 Score=99.76 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=45.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC--CCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF--GSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~--GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
++||+|||||++||++|..|+++|++|+|+|+.+.. .+....+. -.++..++++++|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~--l~~~~~~~l~~lGl~ 62 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGV--LEQGTVDLLREAGVG 62 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeE--ECHhHHHHHHHcCCh
Confidence 479999999999999999999999999999998752 22222222 234566788888875
No 103
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.11 E-value=4.4e-08 Score=98.74 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=43.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC---CCeEEEEcCCCCCC---CCcccccccccccHHHHHHHhCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQ---GFDVTVLDDGNGFG---SPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~---G~~V~vlE~~~~~G---G~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
.++||+|||||++|+++|+.|+++ |++|+|+|+....+ ...+.....-.++..+.++.+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~ 69 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVW 69 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCCh
Confidence 458999999999999999999998 99999999953221 111100111223345677888875
No 104
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.11 E-value=1.4e-08 Score=102.10 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHhcC-CEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccChhh
Q 009646 249 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 306 (530)
Q Consensus 249 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~~~ 306 (530)
.+.+.|.+.+++.| ++++ +++|++|+.++ +.+ .|.++ ++++.||.||.|.|.+-
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDP--DAA-TLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeE-EEEECCCCEEEeeEEEEeCCCCc
Confidence 35666777787777 8998 99999998765 444 35554 55899999999999863
No 105
>PRK11445 putative oxidoreductase; Provisional
Probab=99.11 E-value=1.1e-07 Score=93.82 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=43.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC--CCcc--cccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG--SPDD--ISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G--G~~~--~g~~~~~~~~~~~~~~lg~~ 107 (530)
++||+|||||++|+++|+.|+++ ++|+|+|+.+..+ |... ++. -.++..+.++++|+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~--l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGL--LAPDAQKSFAKDGLT 62 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCc--cCHHHHHHHHHcCCC
Confidence 47999999999999999999999 9999999987543 2111 121 234566788888875
No 106
>PRK06126 hypothetical protein; Provisional
Probab=99.10 E-value=2e-08 Score=105.42 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=45.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
....+||+|||||++||++|..|+++|++|+|+|+.+... .......-.++.+++++++|+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~--~~~ra~~l~~r~~e~L~~lGl~ 65 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTA--FNPKANTTSARSMEHFRRLGIA 65 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC--CCCccccCCHHHHHHHHhcChH
Confidence 3456899999999999999999999999999999876432 1111112234456677777765
No 107
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.10 E-value=1.1e-08 Score=101.53 Aligned_cols=54 Identities=24% Similarity=0.143 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChh
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 305 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~ 305 (530)
.+.+.+.+.+. .++.++++++|++|+..+ +.+..+..+|++++|+.||-|.|..
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETG--DGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecC--ceEEEEECCCCEEEeeEEEECCCcc
Confidence 35555777777 566788999999999886 4333444456699999999999844
No 108
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.10 E-value=9.6e-10 Score=115.63 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=47.2
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
+..+...|.+.+.+.|++|+.++.++++..++ +|++.++.. +++ .+.|+.||+|+|...
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 34688888888888899999999999988763 377777764 233 679999999999864
No 109
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.09 E-value=1.7e-09 Score=109.77 Aligned_cols=59 Identities=27% Similarity=0.309 Sum_probs=47.0
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC----Ce--eEecCEEEEccChhhH
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL 307 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~----~~--~~~ad~VV~a~~~~~~ 307 (530)
...++..|.+.++++|++|+++++|++|..++ ++|++|... ++ ++.|+.||+|+|....
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 35688889999999999999999999999987 888888775 33 6889999999998875
No 110
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.07 E-value=2.3e-09 Score=105.10 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=56.9
Q ss_pred ecCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECC---eeEecCEEEEccChhhHHHhhhh
Q 009646 242 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGISTLQELIKN 313 (530)
Q Consensus 242 ~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~---~~~~ad~VV~a~~~~~~~~ll~~ 313 (530)
|..-.+.++.++|.+.++++|++|+.+++|+++..++ +++..|.+++ .++.||.||+|+|.|....|+.+
T Consensus 257 PPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 257 PPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence 3444456789999999999999999999999999876 6677777554 38999999999999977766543
No 111
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.07 E-value=4e-09 Score=107.65 Aligned_cols=59 Identities=25% Similarity=0.270 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE--CC-e--eEecCEEEEccChhhH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK-E--TYSAGAVVLAVGISTL 307 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~--~~-~--~~~ad~VV~a~~~~~~ 307 (530)
..+.+.|.+.+++.|++|+++++|++|..++ ++++++|.. .+ + .+.++.||+|+|....
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 3578889988999999999999999999864 366665554 22 2 4789999999997654
No 112
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.06 E-value=9.9e-09 Score=106.76 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--Ce--eEec-CEEEEccChhhH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL 307 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~--~~~a-d~VV~a~~~~~~ 307 (530)
..|+..|.+.+++.|++|+++++|++|..++ |+|++|... ++ .+.+ +.||+|+|....
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 5688899999999999999999999998755 888887553 33 4566 579999998754
No 113
>PRK07236 hypothetical protein; Provisional
Probab=99.06 E-value=4.4e-08 Score=98.26 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=47.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIKP 108 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~~ 108 (530)
+.++||+|||||++||++|..|+++|++|+|+|+.+..-.....| ..-.++..++++++|+..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~g-i~l~~~~~~~l~~lg~~~ 66 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAG-IVLQPELLRALAEAGVAL 66 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCce-eEeCHHHHHHHHHcCCCc
Confidence 345899999999999999999999999999999986431100011 112456778889988863
No 114
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.05 E-value=6.1e-08 Score=96.70 Aligned_cols=55 Identities=5% Similarity=0.122 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcC-CEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhH
Q 009646 250 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 307 (530)
Q Consensus 250 l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~ 307 (530)
|...|.+.+.+.+ ++++++++|++|..++ +.+ .+..++++++||.||-|-|.+-.
T Consensus 106 L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v-~v~~~~~~~~adlvIgADG~~S~ 161 (374)
T PRK06617 106 FKKILLSKITNNPLITLIDNNQYQEVISHN--DYS-IIKFDDKQIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeE-EEEEcCCEEeeCEEEEeCCCCch
Confidence 5556777776664 8999999999998876 443 35555569999999999998743
No 115
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.05 E-value=1.7e-09 Score=109.33 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=44.7
Q ss_pred cchhHHHHHHHHHh-cCCEEEcCceeeEEEecCCCCeEEEEEE--CCe--eEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~v~~--~~~--~~~ad~VV~a~~~~~ 306 (530)
...+.+.|.+.+.+ .|++|+++++|++|..++ +++++|.. +++ ++.|+.||+|+|...
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 34578888888765 599999999999998765 66666442 343 589999999999743
No 116
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.04 E-value=8.4e-09 Score=105.31 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEE-E-EC-C--eeEecCEEEEccChhhHH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDV-V-CG-K--ETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v-~-~~-~--~~~~ad~VV~a~~~~~~~ 308 (530)
..+..+|.+.+++.|++|+++++|++|+.++ ++.+... . ++ + .+++||+||+|+|.+...
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence 4678888888888999999999999998864 2433222 1 12 2 268999999999998654
No 117
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.04 E-value=1.8e-07 Score=93.77 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=32.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
+||+|||||++|++||+.|+++|++|+|+|++...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~ 35 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN 35 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 58999999999999999999999999999997543
No 118
>PLN02985 squalene monooxygenase
Probab=99.04 E-value=6.8e-08 Score=99.49 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=44.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
....+||+|||||++|+++|+.|+++|++|+|+|+......+. .|.. -.++-.+.++++|+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~-~g~~-L~p~g~~~L~~LGl~ 101 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM-MGEF-MQPGGRFMLSKLGLE 101 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc-cccc-cCchHHHHHHHcCCc
Confidence 4566899999999999999999999999999999975432221 1111 123345667777765
No 119
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.04 E-value=7.5e-10 Score=101.02 Aligned_cols=221 Identities=13% Similarity=0.083 Sum_probs=116.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-c---c------------cccccccccHHHHHHHhC-CCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-D---D------------ISFWYPFRNIFSLVDELG-IKPF 109 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~-~---~------------~g~~~~~~~~~~~~~~lg-~~~~ 109 (530)
++|.+|||||++|+..|..|++.|.+|+|+||.+++||. + + +.|..+...+++++..+- +.+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e~~~- 79 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTEFNP- 79 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhhhhh-
Confidence 479999999999999999999999999999999999999 1 1 223334455666665541 211
Q ss_pred CCcccceeeccCCcccccccccCCCCCCCcccchhhhhccC--CchhhhhccchhHHHhhhccCcchhhhcccCccHHHH
Q 009646 110 TGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSR--LPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITAREL 187 (530)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 187 (530)
+....+-..++.... +|-.+.. .+++.. ... +. .+.+...... .....+..++++-
T Consensus 80 --Y~hrVla~~ng~~~~---------lP~nl~t--i~ql~G~~~~p-~~---a~~~i~~~~~-----~~~~~~~q~~ee~ 137 (374)
T COG0562 80 --YQHRVLALVNGQLYP---------LPFNLNT--INQLFGKNFTP-DE---ARKFIEEQAA-----EIDIAEPQNLEEQ 137 (374)
T ss_pred --hccceeEEECCeeee---------ccccHHH--HHHHhCccCCH-HH---HHHHHHHhhc-----cccccchhhhhhH
Confidence 111112122222111 1111111 111111 110 01 1101110000 0111122333433
Q ss_pred -HHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhh--cCcceeEeecCCCcchhHHHHHHHHHhcCCE
Q 009646 188 -FKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH--QKNFDLVWCRGTLREKIFEPWMDSMRTRGCE 264 (530)
Q Consensus 188 -l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~--~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~ 264 (530)
++. +.+.+.+.++.++....|+.++.++.+.........+-..+ ...--..+|.+| ....+.+.+....++
T Consensus 138 ais~--vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~G----YT~~~~kMl~hp~I~ 211 (374)
T COG0562 138 AISL--VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDG----YTAMFEKMLDHPNID 211 (374)
T ss_pred HHHH--HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCcccc----HHHHHHHHhcCCCce
Confidence 333 34788999999999999999999999975433221111100 000001234443 222333334556899
Q ss_pred EEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHH
Q 009646 265 FLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 265 i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~ 308 (530)
|++|+.-..+.... . .+.+..||.|-+....-
T Consensus 212 V~Lntd~~~~~~~~--~----------~~~~~~VvytG~iD~~F 243 (374)
T COG0562 212 VRLNTDFFDVKDQL--R----------AIPFAPVVYTGPIDAYF 243 (374)
T ss_pred EEecCcHHHHhhhh--c----------ccCCCceEEecchHhhh
Confidence 99998777665432 1 13445888887766543
No 120
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.02 E-value=1.5e-08 Score=106.14 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=47.2
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--Ce--eEecC-EEEEccChhhH
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGISTL 307 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~--~~~ad-~VV~a~~~~~~ 307 (530)
+..++..|.+.+++.|++|+++++|++|..++ +|+|++|... ++ ++.|+ .||+|+|....
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 34577778888888999999999999999875 4788877653 33 57887 59999997653
No 121
>PRK06996 hypothetical protein; Provisional
Probab=99.01 E-value=1.7e-07 Score=94.25 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=45.6
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCC----CeEEEEcCCCCCCCCcc-cccccccccHHHHHHHhCCC
Q 009646 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQG----FDVTVLDDGNGFGSPDD-ISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 43 ~~~~~~dVvIIGaG~aGL~aA~~La~~G----~~V~vlE~~~~~GG~~~-~g~~~~~~~~~~~~~~lg~~ 107 (530)
|.+..+||+|||||++|+++|..|+++| .+|+|+|+.+...-..+ .+.. -.+....+++.+|+-
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~-l~~~~~~~L~~lg~~ 75 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIA-LSHGSRVLLETLGAW 75 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEE-ecHHHHHHHHhCCCc
Confidence 5567789999999999999999999987 47999999764321111 1221 234455677888764
No 122
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.01 E-value=1.7e-08 Score=105.90 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE--CCe--eEec-CEEEEccChhhH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGISTL 307 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~--~~~--~~~a-d~VV~a~~~~~~ 307 (530)
..++..|.+.+++.|++|+++++|++|..++ +++++|.. +++ ++.| +.||+|+|.+..
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4578889999999999999999999998775 77776654 333 5788 999999998854
No 123
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.01 E-value=5.7e-09 Score=104.54 Aligned_cols=56 Identities=21% Similarity=0.346 Sum_probs=45.8
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 305 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~ 305 (530)
...+.+.+.+.+++.|++++++++|++|..++ +. +.+.++++++.+|.||+|+|..
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~-~~v~~~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDD--NG-FGVETSGGEYEADKVILATGGL 159 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--Ce-EEEEECCcEEEcCEEEECCCCc
Confidence 34577788888888999999999999998765 43 4566677789999999999974
No 124
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.00 E-value=2e-08 Score=102.72 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhcC-CEEEcCceeeEEEecCCCCeEEEEE--E-CCe--eEecCEEEEccChhhHH
Q 009646 249 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVV--C-GKE--TYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 249 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~v~--~-~~~--~~~ad~VV~a~~~~~~~ 308 (530)
.+...|.+.+++.| ++|+++++|++|+.++ ++.+.... + +++ ++.|++||+|+|.+...
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 57788888888877 7999999999999865 34332222 1 232 69999999999998754
No 125
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.00 E-value=2.2e-08 Score=104.60 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=46.2
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE--CCe--eEecC-EEEEccChhhH
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGISTL 307 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~--~~~--~~~ad-~VV~a~~~~~~ 307 (530)
...+...|.+.+++.|++|+++++|++|..++ ++|++|.. +++ .+.|+ .||+|+|....
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 34577788888888999999999999999875 77777665 333 57886 59998887644
No 126
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.00 E-value=6.6e-09 Score=106.72 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=46.7
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~l 310 (530)
...+.+.+.+.+++.|++++++++|++|+.++ +.+.....+++++.+|.||+|+|.....++
T Consensus 215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGVIVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence 34567778888888999999999999998765 433322234568999999999997655443
No 127
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.00 E-value=1.1e-08 Score=106.77 Aligned_cols=41 Identities=39% Similarity=0.593 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC--CCCCCc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN--GFGSPD 86 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~--~~GG~~ 86 (530)
.++||+|||+|++||+||..++++|.+|+||||.+ ..||..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 45899999999999999999999999999999999 788873
No 128
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.00 E-value=4.6e-10 Score=97.67 Aligned_cols=62 Identities=31% Similarity=0.372 Sum_probs=45.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc-cccccc----cccHHHHHHHhCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD-ISFWYP----FRNIFSLVDELGIK 107 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~-~g~~~~----~~~~~~~~~~lg~~ 107 (530)
..+||+|||||++||+||++|+++|++|+|+|++..+||.+. +|..++ ......+++++|++
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~ 82 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIP 82 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT--
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCce
Confidence 458999999999999999999999999999999999998865 555443 33456788999886
No 129
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.99 E-value=2.1e-07 Score=87.94 Aligned_cols=63 Identities=17% Similarity=0.331 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECC----------------eeEecCEEEEccChhh--HHHh
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK----------------ETYSAGAVVLAVGIST--LQEL 310 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~----------------~~~~ad~VV~a~~~~~--~~~l 310 (530)
+++.-|.+.+++.|++|.-+..+.++.+++ +|.|.+|.+++ =++.|..-|+|-|.+. ..++
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~e-dgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDE-DGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcC-CCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHH
Confidence 466668888899999999999999999987 78888888752 1688899999888763 3344
Q ss_pred hh
Q 009646 311 IK 312 (530)
Q Consensus 311 l~ 312 (530)
+.
T Consensus 263 ~k 264 (621)
T KOG2415|consen 263 IK 264 (621)
T ss_pred HH
Confidence 43
No 130
>PRK12839 hypothetical protein; Provisional
Probab=98.98 E-value=2.2e-08 Score=104.49 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC---Ce-eE-ecCEEEEccChhhH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TY-SAGAVVLAVGISTL 307 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~---~~-~~-~ad~VV~a~~~~~~ 307 (530)
..++..|.+.+.+.|++|+++++|++|..++ +|++++|... +. ++ .++.||+|+|.+..
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 4578889988888999999999999998764 3788887642 22 34 45899999998754
No 131
>PRK07538 hypothetical protein; Provisional
Probab=98.98 E-value=1.3e-07 Score=95.73 Aligned_cols=35 Identities=29% Similarity=0.570 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
+||+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999998654
No 132
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.97 E-value=1.2e-08 Score=101.61 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-C--eeEecCEEEEccChhhHHHhh
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGISTLQELI 311 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~--~~~~ad~VV~a~~~~~~~~ll 311 (530)
++.+.|.+.+++.|++|+++++|++++.++ +++..+... + ..+.||.||+|+|......|.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCcccCcee
Confidence 578889999999999999999999999876 555554443 3 368999999999986555443
No 133
>PRK05868 hypothetical protein; Validated
Probab=98.97 E-value=2.2e-07 Score=92.41 Aligned_cols=36 Identities=36% Similarity=0.601 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
++||+|||||++||++|..|+++|++|+|+|+.+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 358999999999999999999999999999998654
No 134
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.96 E-value=7.4e-07 Score=94.34 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=44.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEcCCCCC--CCCcccccccccccHHHHHHHhCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQ-GFDVTVLDDGNGF--GSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~-G~~V~vlE~~~~~--GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
+.++||+|||||++||++|..|++. |.+|+|+|+.+.. .|+ + ..-.++..++++.+|+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~gr---A-~gl~prtleiL~~lGl~ 91 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQ---A-DGIACRTMEMFQAFGFA 91 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCe---e-eEEChHHHHHHHhccch
Confidence 3478999999999999999999994 9999999987542 111 1 11235566777777765
No 135
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.96 E-value=5.3e-09 Score=105.42 Aligned_cols=60 Identities=32% Similarity=0.491 Sum_probs=45.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
.++||+|||||++||++|..|+++|++|+|+|+.+.++- ...+ +.-.++..+.++++|+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~-~g~g-i~l~~~~~~~l~~lg~~ 62 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE-IGAG-IQLGPNAFSALDALGVG 62 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccccc-ccce-eeeCchHHHHHHHcCCh
Confidence 347999999999999999999999999999999876541 1111 12235566777777764
No 136
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.96 E-value=1.4e-08 Score=103.56 Aligned_cols=58 Identities=24% Similarity=0.207 Sum_probs=44.6
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~ 308 (530)
+.+.+.+.+.+++.|++++++++|++|..++ +.+ .+..+++++.+|.||+|+|.....
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v-~v~~~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDG--DQV-LVVTEDETYRFDALLYATGRKPNT 255 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEE-EEEECCeEEEcCEEEEeeCCCCCc
Confidence 3455566677888999999999999998754 443 345567789999999999976543
No 137
>PRK06370 mercuric reductase; Validated
Probab=98.96 E-value=1.2e-08 Score=104.78 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-C-CeeEecCEEEEccChhhHH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~-~~~~~ad~VV~a~~~~~~~ 308 (530)
..+.+.+.+.+++.|++|+++++|++|+.++ ++..+.+.. + +.++.+|.||+|+|.....
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDG-DGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 3456677788888999999999999998765 233223332 2 3479999999999966443
No 138
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.96 E-value=9.7e-09 Score=99.99 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=62.5
Q ss_pred hhhhhhcCCCchhchHHHHHHHHHHHHHh---hcCcceeEeec------CCCcchhHHHHHHHHHhcCCEEEcCceeeEE
Q 009646 204 PLVQVGLFAPAEQCSAAATLGILYFIILA---HQKNFDLVWCR------GTLREKIFEPWMDSMRTRGCEFLDGRRVTDF 274 (530)
Q Consensus 204 ~~~~~~~~~~~~~~s~~~~~~~l~~~~~~---~~~~~~~~~~~------gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I 274 (530)
.+...+.|.++-|++.... ..++..... .....++.+.. ..+.+.+.+...+.|+++|++|++++.|++|
T Consensus 157 ti~IvGgG~TGVElAgeL~-~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v 235 (405)
T COG1252 157 TIVIVGGGPTGVELAGELA-ERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEV 235 (405)
T ss_pred EEEEECCChhHHHHHHHHH-HHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEE
Confidence 4455666777777777532 222222111 11122333332 3345677888888899999999999999999
Q ss_pred EecCCCCeEEEEEECCeeEecCEEEEccChhhHH
Q 009646 275 IYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 275 ~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~ 308 (530)
+.+. +.+..+++++.++.||+|+|.....
T Consensus 236 ~~~~-----v~~~~g~~~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 236 TPDG-----VTLKDGEEEIPADTVVWAAGVRASP 264 (405)
T ss_pred CCCc-----EEEccCCeeEecCEEEEcCCCcCCh
Confidence 8753 2222223369999999999976544
No 139
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.95 E-value=1.3e-07 Score=98.76 Aligned_cols=61 Identities=26% Similarity=0.364 Sum_probs=43.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC-C--CCCcccccccccccHHHHHHHhCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG-F--GSPDDISFWYPFRNIFSLVDELGI 106 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~-~--GG~~~~g~~~~~~~~~~~~~~lg~ 106 (530)
..+++|+|||||++||++|..|+++|++|+|+||.+. . .|.+. +-+.-.++..+.++.+|+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~-~~I~L~pngl~aLe~LGl 142 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYR-GPIQIQSNALAALEAIDI 142 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccC-cccccCHHHHHHHHHcCc
Confidence 4568999999999999999999999999999999752 1 11111 112234445566666664
No 140
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.95 E-value=1.2e-08 Score=103.45 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHh-cCCEEEcCceeeEEEecCCCCeEEE-EE-ECCe---eEecCEEEEccChhhHH
Q 009646 249 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISD-VV-CGKE---TYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 249 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~-v~-~~~~---~~~ad~VV~a~~~~~~~ 308 (530)
.+.++|.+.+.+ .|++|+++++|++|..++ ++.+.. +. ++.+ ++.||+||+|+|.|...
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEEEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence 577788888854 489999999999998773 243322 21 3333 68999999999999754
No 141
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.95 E-value=3.6e-08 Score=103.44 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=47.4
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--Ce--eEec-CEEEEccChhhH
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL 307 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~--~~~a-d~VV~a~~~~~~ 307 (530)
+..++..|.+.+++.|++|+++++|++|..++ +++++|... ++ ++.| +.||+|+|....
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 34688889999999999999999999998765 778777654 32 5776 689999998754
No 142
>PRK06753 hypothetical protein; Provisional
Probab=98.95 E-value=1.8e-07 Score=93.50 Aligned_cols=36 Identities=36% Similarity=0.619 Sum_probs=33.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G 83 (530)
+||+|||||++||++|..|+++|++|+|+|+.+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 489999999999999999999999999999987653
No 143
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.95 E-value=9.3e-09 Score=107.97 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--Ce--eEecC-EEEEccChhh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~--~~~ad-~VV~a~~~~~ 306 (530)
..+...|.+.+++.|++|+++++|++|..++ +++++|... ++ .+.++ .||+|+|.+.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 4588889888899999999999999999876 777776653 23 47786 7999999875
No 144
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.95 E-value=3.5e-08 Score=101.00 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=48.5
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhH
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 307 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~ 307 (530)
...+.+.|.+.+++.|++++.+ .|+.+..++ ++++++..+++.+.++.||+|+|.+..
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFSG 176 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCcC
Confidence 3468888999998899999876 899988765 778788887778999999999998754
No 145
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.95 E-value=2.2e-07 Score=93.07 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=43.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC--CCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF--GSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~--GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
++||+|||||++||++|..|+++|++|+|+|+.+.. .+.+..+. -.++..++++++|+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~--l~~~~~~~L~~lGl~ 62 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGV--LEQGTVDLLREAGVD 62 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEee--ECHHHHHHHHHCCCh
Confidence 479999999999999999999999999999998752 11111111 233456777777765
No 146
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.95 E-value=8e-09 Score=104.70 Aligned_cols=41 Identities=34% Similarity=0.541 Sum_probs=38.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
..++|+|||||++||+||.+|.+.|++|+|+|+++.+||.+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W 49 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLW 49 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCccee
Confidence 45899999999999999999999999999999999999874
No 147
>PLN02661 Putative thiazole synthesis
Probab=98.94 E-value=7.1e-09 Score=98.87 Aligned_cols=40 Identities=33% Similarity=0.535 Sum_probs=36.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEcCCCCCCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQ-GFDVTVLDDGNGFGSP 85 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~-G~~V~vlE~~~~~GG~ 85 (530)
.++||+|||||++|++||+.|+++ |++|+|+|++..+||.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 468999999999999999999986 8999999999888774
No 148
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.94 E-value=2.9e-07 Score=93.78 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHH----CCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSK----QGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~----~G~~V~vlE~~~ 80 (530)
+||+|||||++|+++|+.|++ +|++|+|+|+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 699999999999999999999 899999999954
No 149
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.94 E-value=2.1e-08 Score=96.78 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC----C---eeEecCEEEEccChhhHHHhhhhccc
Q 009646 251 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K---ETYSAGAVVLAVGISTLQELIKNSIL 316 (530)
Q Consensus 251 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~----~---~~~~ad~VV~a~~~~~~~~ll~~~~~ 316 (530)
...|...+.+.+.+|++++.|++|..+++++++++|... . ..+.++.||+|+|+-.+.+||..+..
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 333444444448999999999999775324777777764 2 25678999999999999889877644
No 150
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.94 E-value=5e-09 Score=95.01 Aligned_cols=35 Identities=46% Similarity=0.719 Sum_probs=29.8
Q ss_pred EEECCCHHHHHHHHHHHHCCCe-EEEEcCCCCCCCC
Q 009646 51 VVVGSGWAGLGAAHHLSKQGFD-VTVLDDGNGFGSP 85 (530)
Q Consensus 51 vIIGaG~aGL~aA~~La~~G~~-V~vlE~~~~~GG~ 85 (530)
+|||||++||++|.+|.++|.+ |+|||+++.+||.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~ 36 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGV 36 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCe
Confidence 6999999999999999999998 9999999999986
No 151
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=3.8e-08 Score=103.20 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=47.9
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
+..|...|.+.+.+.|++|++++.|+++..++ +|++++|.. +++ .+.|+.||+|+|...
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 45688888888888899999999999999863 388888765 233 578999999999865
No 152
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.92 E-value=4e-08 Score=103.53 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=47.0
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
+..+...|.+.+.+.|++|+.++.|+++..++ +|++.+|.. +++ .+.|+.||+|+|...
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 34688889988888999999999999998733 378877764 233 678999999998764
No 153
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=4.5e-08 Score=102.40 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC----Ce--eEecCEEEEccChhh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~----~~--~~~ad~VV~a~~~~~ 306 (530)
..+...|.+.+.+.|++|+.++.++++..++ |++++|... ++ .+.|+.||+|+|...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4578888888888899999999999999876 888887652 22 678999999999865
No 154
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.92 E-value=3.7e-07 Score=91.35 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhh
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 306 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~ 306 (530)
.++.+|+..+++.|+.|..+++|++|.... +++.+|++..+.+++.+||-|+|.|.
T Consensus 188 ~lC~ala~~A~~~GA~viE~cpV~~i~~~~--~~~~gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 188 GLCQALARAASALGALVIENCPVTGLHVET--DKFGGVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHhcCcEEEecCCcceEEeec--CCccceeccCcceecceEEechhHHH
Confidence 578888888899999999999999999876 55569999988999999999999997
No 155
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.92 E-value=5.7e-08 Score=101.42 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=47.6
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--Ce--eEecC-EEEEccChhhH
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGISTL 307 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~--~~~ad-~VV~a~~~~~~ 307 (530)
+..++..|.+.+++.|++|+++++|++|..++ ++|++|... ++ ++.|+ .||+|+|....
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 34688889899999999999999999999876 788887663 43 57785 69999997644
No 156
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=7.3e-08 Score=101.91 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC----Ce--eEecCEEEEccChhh
Q 009646 252 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 252 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~----~~--~~~ad~VV~a~~~~~ 306 (530)
+.|.+.+++.|++|++++.|++|..++ |++++|... ++ .+.|+.||+|+|...
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 556667778899999999999998876 788777652 32 689999999999854
No 157
>PLN02815 L-aspartate oxidase
Probab=98.90 E-value=1.1e-07 Score=99.29 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=36.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
..++||+|||+|++||+||..+++.| +|+|+||....||.
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 44689999999999999999999999 99999999988875
No 158
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.90 E-value=3.8e-08 Score=102.44 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=46.8
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-------C--eeEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K--ETYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-------~--~~~~ad~VV~a~~~~~ 306 (530)
+..+...|.+.+++.|++|+.++.|++|..++ +|++.++... + ..+.|+.||+|+|...
T Consensus 143 G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 143 GAEVQRALDAAVRADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHHhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 34588889888888899999999999998865 3677666542 2 3689999999999864
No 159
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.90 E-value=6.1e-08 Score=101.98 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
..+...|.+.+.+.|++|+.++.|++|..++ |++.+|.. +++ .+.|+.||+|+|...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 4577888888888899999999999998876 77776653 243 589999999999764
No 160
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.90 E-value=6e-08 Score=102.02 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=48.2
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhhH
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 307 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~~ 307 (530)
+..+...|.+.+.+.|++|++++.|++|..++ +|++++|.. +++ .+.|+.||+|+|....
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 34688889888888899999999999998764 477887764 233 6889999999998653
No 161
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=6.3e-08 Score=101.67 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=46.7
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
+..+...|.+.+.+.|++|+.++.|++|..++ |++.++.. +++ .+.|+.||+|+|...
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 34688889888888899999999999998765 77666642 233 589999999999864
No 162
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=9.7e-08 Score=100.32 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=47.0
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
+..+...|.+.+.+.|++++.++.|+++..++ +|++.+|.. +++ .+.|+.||+|+|...
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 35688888888888899999999999998764 377777754 233 578999999999864
No 163
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.88 E-value=6.8e-09 Score=109.87 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
..+...|.+.+.+.|++|+.++.|++|..++ |++.++.. +++ .+.|+.||+|+|...
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 3466778888888899999999999999876 77766554 233 568999999999764
No 164
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.86 E-value=1.1e-07 Score=98.37 Aligned_cols=40 Identities=25% Similarity=0.601 Sum_probs=37.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
.++||||||+| +||+||+.++++|.+|+||||.+..||..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 36899999999 99999999999999999999999888873
No 165
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.86 E-value=9.8e-08 Score=87.58 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCe---eEecCEEEEccChhhHHHhhhh
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE---TYSAGAVVLAVGISTLQELIKN 313 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~---~~~ad~VV~a~~~~~~~~ll~~ 313 (530)
++-+.|...+++.|+.+..+-+|.+.+..+ ++|..|-+... .++||.+|+|+|....+-|..+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae 324 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAE 324 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccchhh
Confidence 577788888999999999999999999987 88887777532 6899999999999877766544
No 166
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.85 E-value=9.5e-08 Score=91.05 Aligned_cols=36 Identities=39% Similarity=0.654 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
+.+|||||||++||++|..|.++|++|+|+|+..-+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 468999999999999999999999999999986543
No 167
>PRK12831 putative oxidoreductase; Provisional
Probab=98.85 E-value=3.4e-08 Score=100.78 Aligned_cols=43 Identities=42% Similarity=0.550 Sum_probs=39.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
...+||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 4568999999999999999999999999999999999999754
No 168
>PRK06116 glutathione reductase; Validated
Probab=98.85 E-value=3.8e-08 Score=100.68 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=45.6
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHH
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~ 308 (530)
...+.+.+.+.+++.|++++++++|++|+.++ ++.+.....+++++.+|.||+|+|.....
T Consensus 207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA-DGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcC-CceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 34566778888899999999999999998765 34333222346689999999999875443
No 169
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.85 E-value=1.2e-06 Score=86.85 Aligned_cols=37 Identities=30% Similarity=0.544 Sum_probs=34.1
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCCCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNGFGSP 85 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~--G~~V~vlE~~~~~GG~ 85 (530)
||+|||||++||++|+.|+++ |++|+|+|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 799999999999999999997 9999999998877753
No 170
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=9.4e-08 Score=101.04 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
.++||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 4589999999999999999999999999999999766553
No 171
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.85 E-value=3e-07 Score=93.32 Aligned_cols=55 Identities=25% Similarity=0.245 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccChhh
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 306 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~~~ 306 (530)
+-..|.+.+.+.|++++.+ .|+.+..++ +|.+..|.+. ++++.||.||=|+|...
T Consensus 156 fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEG-TVVDVELDE-DGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHhcCCCEEEeC-EEEEEEEcC-CCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 3444667778889999888 588888876 6888888885 56899999999999764
No 172
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.84 E-value=3.1e-07 Score=91.99 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCe-eEecCEEEEccChhhHH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~-~~~ad~VV~a~~~~~~~ 308 (530)
..+...|.+.+.+ |++|+.+++|++|+.++ +. +.|.++++ .+.||.||+|+|.|...
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~-~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG--EG-WQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--Ce-EEEEeCCCCEEEcCEEEEcCCccccc
Confidence 3577778888888 99999999999999865 54 35666554 58999999999998654
No 173
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.84 E-value=1.7e-08 Score=104.94 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=45.3
Q ss_pred cchhHHHHHHHHHhc-CCEEEcCceeeEEEecCCCCeEEEEEEC--Ce--eEecCEEEEccChh
Q 009646 247 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIS 305 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~--~~~ad~VV~a~~~~ 305 (530)
+..++..|.+.+.+. |++|++++.|+++..++++|++++|... ++ .+.|+.||+|+|..
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 346888888888654 9999999999999876313677776543 33 47899999999984
No 174
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.83 E-value=4.5e-09 Score=106.23 Aligned_cols=57 Identities=28% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC----CeeEecCEEEEccChhhHHHhhh
Q 009646 254 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KETYSAGAVVLAVGISTLQELIK 312 (530)
Q Consensus 254 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~----~~~~~ad~VV~a~~~~~~~~ll~ 312 (530)
|.+.+.+.|++|++++.|+++..++ +++.+|... ..++.|+.||-|++-..+..+..
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG 156 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAG 156 (428)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 4444567899999999999999987 778888775 34899999999999766654443
No 175
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.83 E-value=1.5e-08 Score=104.06 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECC---eeEecCEEEEccChhhHHH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGISTLQE 309 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~---~~~~ad~VV~a~~~~~~~~ 309 (530)
..+.+.+.+.+++.|++++++++|++|+.++ +.+.....++ +++.+|.||+|+|......
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD--DGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 4566677888888999999999999998765 4433222334 5799999999999765443
No 176
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.83 E-value=8.4e-08 Score=98.89 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHh-cCCEEEcCceeeEEEecCCCCeEEEEEEC--C--eeEecCEEEEccChhhH
Q 009646 248 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL 307 (530)
Q Consensus 248 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~--~~~~ad~VV~a~~~~~~ 307 (530)
..+...|.+.+++ .|++|+.++.|++|..++ +++.++... + ..+.|+.||+|+|....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 4578888888877 699999999999998765 666655543 2 36899999999998753
No 177
>PRK08275 putative oxidoreductase; Provisional
Probab=98.83 E-value=1.4e-07 Score=98.69 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
..+.+.|.+.+++.|++|+.++.|++|..++ ++++.++.. +++ .+.|+.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3577888888888999999999999998873 377766653 233 588999999999864
No 178
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.83 E-value=6e-08 Score=98.86 Aligned_cols=62 Identities=8% Similarity=0.003 Sum_probs=46.2
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CC-eeEecCEEEEccChhhHHHh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~-~~~~ad~VV~a~~~~~~~~l 310 (530)
...+.+.+.+.+++.|+++++++.|++|..++ ++.+ .+.. ++ .++.+|.||+|+|......+
T Consensus 206 d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~-~~~~-~v~~~~g~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 206 DSMISETITEEYEKEGINVHKLSKPVKVEKTV-EGKL-VIHFEDGKSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC-CceE-EEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence 34566778888889999999999999998754 2433 3444 34 47999999999997755543
No 179
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.82 E-value=4.6e-08 Score=94.60 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=33.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
+||+|||||++||++|..|++.|++|+|+|+++ .||.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~ 37 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQ 37 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcc
Confidence 689999999999999999999999999999886 6654
No 180
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.82 E-value=3.6e-08 Score=90.40 Aligned_cols=41 Identities=37% Similarity=0.550 Sum_probs=36.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC--CCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG--FGSP 85 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~--~GG~ 85 (530)
...+||||||+|++||.||..|+++|.+|+|+|+... +||.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 3468999999999999999999999999999998765 6776
No 181
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.81 E-value=8.1e-08 Score=98.00 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=35.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
+|||+|||||++|++||..+++.|++|+|+|+. .+||.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~ 39 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGT 39 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCce
Confidence 589999999999999999999999999999984 78885
No 182
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.81 E-value=2.5e-07 Score=97.48 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcC-CEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 249 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 249 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
.+...|.+.+++.| ++|+.++.|++|..++ +++++|.. +++ .+.|+.||+|+|...
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 46667777777765 9999999999998765 67666632 233 689999999999765
No 183
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.81 E-value=6.3e-08 Score=106.08 Aligned_cols=62 Identities=34% Similarity=0.437 Sum_probs=47.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCccc---ccccccc---cHHHHHHHhCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDI---SFWYPFR---NIFSLVDELGIK 107 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~---g~~~~~~---~~~~~~~~lg~~ 107 (530)
..++|+|||||+|||+||+.|+++|++|+|+|+.+.+||.+.. .|..+.. ...+.++++|++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~ 372 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGR 372 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCe
Confidence 4689999999999999999999999999999999999997542 2332211 233456667776
No 184
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.81 E-value=6e-08 Score=98.95 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~ 308 (530)
..+.+.+.+.+++.|++++++++|++|..++ +.+ .+..+++++.+|.||+|+|.....
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v-~v~~~~g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE--NQV-QVHSEHAQLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEEcCCeEEeCEEEEeecCCcCC
Confidence 4566778888899999999999999998765 443 455555679999999999976544
No 185
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.80 E-value=3.6e-08 Score=101.34 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECC--eeEecCEEEEccChhhH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGISTL 307 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~--~~~~ad~VV~a~~~~~~ 307 (530)
..+.+.+.+.+++.|++++++++|++|+.++ +.+.....++ .++.+|.||+|+|....
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 3466677888888999999999999998765 5443222334 47999999999997654
No 186
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=1.2e-07 Score=98.93 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
+..+...|.+.+.+.|++|+++++|+++..++ +++++++.. +++ .+.|+.||+|+|...
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 34578888888888899999999999998876 344766542 233 689999999999764
No 187
>PTZ00058 glutathione reductase; Provisional
Probab=98.79 E-value=1.7e-07 Score=97.11 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECC-eeEecCEEEEccChhhHHHh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~-~~~~ad~VV~a~~~~~~~~l 310 (530)
.+.+.+.+.+.+++.|+++++++.|++|+.++ ++.+..+..++ +++.+|.||+|+|.....+.
T Consensus 277 d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~-~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~ 340 (561)
T PTZ00058 277 DETIINELENDMKKNNINIITHANVEEIEKVK-EKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED 340 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-CCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence 34566778888888999999999999998654 23333333333 47999999999996644433
No 188
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=1.9e-07 Score=98.19 Aligned_cols=58 Identities=29% Similarity=0.375 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCC---CeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER---CCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~---g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
..+...|.+.+.+.|++|+.++.|++|..++ + |++.++.. +++ .+.|+.||+|+|...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTE-TPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-CccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 4578888888888899999999999998754 2 67766654 233 578999999999865
No 189
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=3.5e-07 Score=96.28 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHh-cCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 248 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
..+...|.+.+.+ .|++|+.++.|+++..++ +++.++.. +++ .+.|+.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4578888887766 589999999999998766 77766543 233 589999999999864
No 190
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.76 E-value=1.1e-07 Score=96.74 Aligned_cols=44 Identities=36% Similarity=0.490 Sum_probs=39.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
+...+||+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 34568999999999999999999999999999999999998754
No 191
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.75 E-value=6.3e-07 Score=82.66 Aligned_cols=82 Identities=22% Similarity=0.230 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCCCCCCCceEEeeccccCCCCCCcchHHHH
Q 009646 395 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 474 (530)
Q Consensus 395 ~~~eei~~~~l~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~g~~~~~iega~~ 474 (530)
...+...+.++-+|....|.+..+++...|.. .+-..+-+.. ..-+..+-+.|||+|-.+. |++ +..+.-
T Consensus 401 VD~d~F~qkiwP~L~nRVP~fetakVqsaWaG----yyD~NtfD~n-gViG~HP~y~Nly~atGFs--ghG---vqqs~a 470 (509)
T KOG2853|consen 401 VDHDYFYQKIWPHLANRVPAFETAKVQSAWAG----YYDHNTFDDN-GVIGEHPLYTNLYMATGFS--GHG---VQQSPA 470 (509)
T ss_pred cChHHHHhhhhHHHHhcccccceeeeeehhcc----cccccccccC-CcccCCcceeeeeeeeccc--ccc---hhcchH
Confidence 34556688899999998888876666655332 2212222211 0112233457999998888 443 667888
Q ss_pred HHHHHHHHHHHH
Q 009646 475 TGLEAANRVVDY 486 (530)
Q Consensus 475 sG~~aA~~il~~ 486 (530)
-|+..|+.|++.
T Consensus 471 vgRAiaElIldG 482 (509)
T KOG2853|consen 471 VGRAIAELILDG 482 (509)
T ss_pred HHHHHHHHHhcC
Confidence 899999999853
No 192
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.74 E-value=3.4e-07 Score=103.38 Aligned_cols=41 Identities=29% Similarity=0.457 Sum_probs=38.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
..+.||||||+|.|||+||..++++|.+|+||||.+..||.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 34689999999999999999999999999999999999987
No 193
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.74 E-value=1.4e-07 Score=96.90 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--CeeEecCEEEEccChhhHH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~~~~ad~VV~a~~~~~~~ 308 (530)
..+...+.+.+++.|++++++++|++|+.++ ++..+.+..+ ++++.+|.||+|+|.....
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG-GGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-CEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 3456667778888999999999999998765 2222222222 3579999999999965443
No 194
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=2.1e-07 Score=97.73 Aligned_cols=39 Identities=33% Similarity=0.370 Sum_probs=35.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
+.||+|||+|+|||+||..++++|.+|+|+||....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 469999999999999999999999999999999877664
No 195
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.73 E-value=9.4e-08 Score=96.58 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=40.7
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEcCCCCCCCCcc
Q 009646 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFD-VTVLDDGNGFGSPDD 87 (530)
Q Consensus 43 ~~~~~~dVvIIGaG~aGL~aA~~La~~G~~-V~vlE~~~~~GG~~~ 87 (530)
+.+..+||+|||||++||++|++|.++|.. ++||||++.+||.+.
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~ 49 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR 49 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch
Confidence 455678999999999999999999999998 999999999998743
No 196
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.72 E-value=7.5e-08 Score=99.04 Aligned_cols=39 Identities=33% Similarity=0.634 Sum_probs=33.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
++|+|||||++||++|..|.+.|++|+++||++.+||.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W 40 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLW 40 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccC
Confidence 589999999999999999999999999999999999974
No 197
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.72 E-value=2.1e-07 Score=96.22 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC---Ce--eEecCEEEEccChhh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~---~~--~~~ad~VV~a~~~~~ 306 (530)
..+.+.|.+.+. .|++|+.++.|++|..++ +++.++... ++ .+.|+.||+|+|...
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 347777777765 589999999999998765 777766653 22 689999999999865
No 198
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.72 E-value=9.4e-08 Score=92.84 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=62.1
Q ss_pred chhHHHHHHHHHhc-CCEEEcCceeeEEEecCCCCeEEEEEE------CCeeEecCEEEEccChhhHHHhhhhccccChH
Q 009646 248 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC------GKETYSAGAVVLAVGISTLQELIKNSILCNRE 320 (530)
Q Consensus 248 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~v~~------~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~ 320 (530)
..|.+.|.+.+.+. |++++++++|+.|.+.+ +|.+ .|.. +..++.|+.|++.+|...+. |+-....
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~-LLqksgi---- 253 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGALP-LLQKSGI---- 253 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCCE-EEEEEecCCCCeEEEECCEEEECCchHhHH-HHHHcCC----
Confidence 35888888888777 99999999999999987 5643 2332 13489999999999999887 4433211
Q ss_pred HHHhhccccceeEEEEEEEeccCC
Q 009646 321 EFLKVLNLASIDVVSVKLWFDKKV 344 (530)
Q Consensus 321 ~~~~~~~l~~~~~~~v~l~~~~~~ 344 (530)
.....++.+|+....+..+++-
T Consensus 254 --~e~~gyggfPVsG~fl~~~n~~ 275 (488)
T PF06039_consen 254 --PEGKGYGGFPVSGQFLRCKNPE 275 (488)
T ss_pred --hhhcccCCCcccceEEecCCHH
Confidence 1345666777765566665553
No 199
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.1e-07 Score=87.91 Aligned_cols=242 Identities=15% Similarity=0.219 Sum_probs=138.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc-----------c-c---------------------ccc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD-----------I-S---------------------FWY 92 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~-----------~-g---------------------~~~ 92 (530)
+.|||+|+|-|+.=..-+..|+.+|.+|+.+|+++.-||... + + ++.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lm 82 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLM 82 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhh
Confidence 349999999999999999999999999999999999999821 0 0 011
Q ss_pred ccccHHHHHHHhCCCCCCCcccc--eeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhcc
Q 009646 93 PFRNIFSLVDELGIKPFTGWMKS--AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 170 (530)
Q Consensus 93 ~~~~~~~~~~~lg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (530)
....+..++.+-|+..+..+... ..+...+.. ..+|..-...+ ....+++..+....+.+....++.
T Consensus 83 An~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~---------~KVP~t~~Ea~--~s~lmgl~eKrr~~kFl~~V~n~~ 151 (440)
T KOG1439|consen 83 ANGELVKILIHTGVTRYLEFKSISGSFVYKKGKI---------YKVPATEAEAL--TSPLMGLFEKRRVMKFLKFVLNYD 151 (440)
T ss_pred ccchHHHHHHHhchhhheEEEeecceEEEECCeE---------EECCCCHHHHh--cCCccchhHHHHHHHHHHHHhhhh
Confidence 12334455555555544333221 111111111 12222211111 112233444444444443333322
Q ss_pred C-cchhhhcccC--ccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHH--hhcCcceeEeecCC
Q 009646 171 N-TDVAWRKYDS--ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGT 245 (530)
Q Consensus 171 ~-~~~~~~~~~~--~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~--~~~~~~~~~~~~gg 245 (530)
. ....|..++. .++++++...++.....+. ..-........+..+..+..+...+..+.. ...+.....+|..|
T Consensus 152 e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f-~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yG 230 (440)
T KOG1439|consen 152 EEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDF-IGHAIALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYPLYG 230 (440)
T ss_pred hhccccccccccccchHHHHHHHhcccccceee-eeeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceecccC
Confidence 1 2233444443 3789999998876553221 111111222222334444444444444432 22233334677777
Q ss_pred CcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEc
Q 009646 246 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 301 (530)
Q Consensus 246 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a 301 (530)
.+ .|.+.+++.-.--|+++.+|.++.+|..+. +|+++++..+++...+..||+-
T Consensus 231 lg-EL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk~~~~v~~~k~vi~d 284 (440)
T KOG1439|consen 231 LG-ELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVKSGGEVAKCKKVICD 284 (440)
T ss_pred cc-hhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEecCCceeecceEEec
Confidence 66 588888877666799999999999999955 4889999999888888877764
No 200
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.70 E-value=4.4e-07 Score=92.31 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--CeeEecCEEEEccChh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIS 305 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~~~~ad~VV~a~~~~ 305 (530)
..+++.|.+.+++.|++|+++++|++|..+++++++++|... +.++.|+.||+|+|..
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 468889999999999999999999999876212677766653 3489999999999954
No 201
>PRK14694 putative mercuric reductase; Provisional
Probab=98.70 E-value=3.3e-08 Score=101.54 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=47.2
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~l 310 (530)
..+.+.+.+.+++.|++++++++|++|+.++ +.+ .+.++++++.+|.||+|+|......+
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG--REF-ILETNAGTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEECCCEEEeCEEEEccCCCCCcCC
Confidence 4567778888889999999999999998765 433 45556668999999999997755543
No 202
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.70 E-value=2.5e-07 Score=102.36 Aligned_cols=62 Identities=34% Similarity=0.436 Sum_probs=47.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccc---ccccc---ccHHHHHHHhCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDIS---FWYPF---RNIFSLVDELGIK 107 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g---~~~~~---~~~~~~~~~lg~~ 107 (530)
..++|+|||||++||+||+.|+++|++|+|+|+.+.+||.+..| +..+. ....+.++++|++
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~ 496 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVK 496 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCE
Confidence 35799999999999999999999999999999999999986522 22121 1234456666766
No 203
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.70 E-value=1.5e-07 Score=97.73 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=35.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
...+||+|||||++||+||..|++.|++|+|+|. ++||.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~ 248 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQ 248 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCc
Confidence 4569999999999999999999999999999974 57774
No 204
>PLN02507 glutathione reductase
Probab=98.70 E-value=2.2e-07 Score=95.73 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=46.5
Q ss_pred CcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhHHHh
Q 009646 246 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 246 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~~~l 310 (530)
....+.+.+.+.+++.|++|+++++|++|+.++ +.+ .+.. +++++.+|.||+++|......+
T Consensus 242 ~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 242 FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGI-KVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeE-EEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 345566777888889999999999999998764 333 3344 4568999999999997654433
No 205
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.69 E-value=1.7e-07 Score=96.28 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE--CC--eeEecCEEEEccChhhHH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~--~~--~~~~ad~VV~a~~~~~~~ 308 (530)
..+...+.+.+++.|++|+++++|++|..++ +.+..+.. ++ +++.+|.||+|+|.....
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 4466778888889999999999999998654 43322222 34 379999999999966443
No 206
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.69 E-value=5.6e-07 Score=94.67 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=43.3
Q ss_pred cchhHHHHHHHHHh----cCCEEEcCceeeEEEecCCCCeEEEEEEC----Ce--eEecCEEEEccChh
Q 009646 247 REKIFEPWMDSMRT----RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIS 305 (530)
Q Consensus 247 ~~~l~~~l~~~l~~----~G~~i~~~~~V~~I~~~~~~g~v~~v~~~----~~--~~~ad~VV~a~~~~ 305 (530)
+..+...|.+.+.+ .|++|+++++|++|..++ +|++++|... ++ .+.|+.||+|+|..
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 34566666665544 389999999999998764 4678777642 32 68899999999975
No 207
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.68 E-value=8.4e-07 Score=92.91 Aligned_cols=58 Identities=26% Similarity=0.206 Sum_probs=45.5
Q ss_pred cchhHHHHHHHHHhc-CCEEEcCceeeEEEecCCCCeEEEEEE----CC--eeEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~--~~~~ad~VV~a~~~~~ 306 (530)
+..|...|.+.+.+. |++++.++.|++|..++ +++.++.. ++ ..+.|+.||+|+|...
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 356888888877664 79999999999999876 77776653 33 2689999999999754
No 208
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.68 E-value=1.3e-07 Score=94.69 Aligned_cols=60 Identities=22% Similarity=0.198 Sum_probs=46.1
Q ss_pred CcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-Ce--eEecCEEEEccChhhHH
Q 009646 246 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE--TYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 246 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~--~~~ad~VV~a~~~~~~~ 308 (530)
..+.+.+.+.+.+++.|++++++++|++++..+ +.+ .+..+ ++ ++.+|.|++|+|-....
T Consensus 212 ~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~--~~v-~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 212 EDPEISKELTKQLEKGGVKILLNTKVTAVEKKD--DGV-LVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred CCHHHHHHHHHHHHhCCeEEEccceEEEEEecC--CeE-EEEEecCCCCEEEeeEEEEccCCccCC
Confidence 456678888888888889999999999999876 333 44443 33 78999999999976444
No 209
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.67 E-value=4.9e-07 Score=92.63 Aligned_cols=43 Identities=42% Similarity=0.687 Sum_probs=39.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
...++|+|||||++||++|+.|+++|++|+|+|+++.+||.+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4568999999999999999999999999999999999998754
No 210
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.67 E-value=7.8e-07 Score=93.38 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHhc-CCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 248 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 248 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
..+...|.+.+.+. +++++.++.|++|..++ |++.++.. +++ .+.|+.||+|+|...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 45777788777664 79999999999999876 77766543 342 689999999999754
No 211
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.66 E-value=7.7e-07 Score=91.10 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=36.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
+||+|||+|++|+++|+.|+++|++|+|+|++...||..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999998753
No 212
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.66 E-value=4e-07 Score=94.18 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHHhc-CCEEEcCceeeEEEecCCCCeEEEEEEC--Ce--eEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~--~~~ad~VV~a~~~~~ 306 (530)
+..+.+.|.+.+.+. |++|+.++.|++|..++ ++++++... ++ .+.|+.||+|+|...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 346888888888765 89999999999998765 777776653 33 589999999999864
No 213
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.66 E-value=7.1e-07 Score=91.90 Aligned_cols=39 Identities=23% Similarity=0.502 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
..|||+|||||.+|++||.+|++.|++|+|+|+. .+||.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~ 41 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGT 41 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcc
Confidence 4699999999999999999999999999999986 77875
No 214
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.65 E-value=4.3e-07 Score=91.51 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=43.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
.+|+|||||++||++|..|+++|++|+|+|+.+.+.- ...+ ..-.++..+.++++|+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~-~g~g-i~l~~~~~~~L~~~Gl~ 60 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE-VGAG-LQLAPNAMRHLERLGVA 60 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc-CCcc-ceeChhHHHHHHHCCCh
Confidence 6899999999999999999999999999999875421 0011 11234566777777764
No 215
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.65 E-value=2.3e-07 Score=96.39 Aligned_cols=39 Identities=31% Similarity=0.536 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
...+||+|||||++||+||.+|++.|++|+|+|+ .+||.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~ 247 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQ 247 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCe
Confidence 4568999999999999999999999999999976 47774
No 216
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.65 E-value=3.6e-07 Score=92.60 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=44.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G-~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
++|+|||||++||++|..|+++| ++|+|+||.+.++.. +..+.-.++..+.++.+|+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~--G~gi~l~~~~~~~L~~lg~~ 59 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEV--GAGVSFGANAVRAIVGLGLG 59 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCC--ccceeeCccHHHHHHHcCCh
Confidence 47999999999999999999998 599999998765421 11222345566777777765
No 217
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.64 E-value=1.3e-06 Score=93.31 Aligned_cols=42 Identities=33% Similarity=0.540 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
..++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999865
No 218
>PLN02546 glutathione reductase
Probab=98.64 E-value=1.3e-06 Score=90.68 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDD 78 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~ 78 (530)
..|||+|||||.+|+.||..+++.|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 358999999999999999999999999999996
No 219
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.64 E-value=7.3e-07 Score=91.53 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=37.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
.+|||+|||||.+|++||..|++.|++|+|+|+.+.+||.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~ 42 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGV 42 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccc
Confidence 4599999999999999999999999999999998788884
No 220
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.64 E-value=3e-07 Score=96.22 Aligned_cols=39 Identities=23% Similarity=0.504 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
..|||+|||||+|||+||..|++.|++|+|+|++ ..||.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~ 41 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQ 41 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCce
Confidence 3599999999999999999999999999999985 57764
No 221
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.64 E-value=1.9e-05 Score=76.49 Aligned_cols=58 Identities=24% Similarity=0.195 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccChhhHH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~~~~~ 308 (530)
.+++.+.+.++++|++|+++++|..|+..+ +.+..|.+. |+++.+|+||+|.|-....
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~Grsg~d 232 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPGRSGRD 232 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccCcchHH
Confidence 467788899999999999999999999987 555666666 5599999999999965433
No 222
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2e-07 Score=88.59 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhh
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 306 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~ 306 (530)
|.+.+.+.....|+++.. ..|.+++..+ . ...|.++.++++|+.||+|+|...
T Consensus 63 L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~-~F~v~t~~~~~~ak~vIiAtG~~~ 115 (305)
T COG0492 63 LMEQMKEQAEKFGVEIVE-DEVEKVELEG--G-PFKVKTDKGTYEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHhhcCeEEEE-EEEEEEeecC--c-eEEEEECCCeEEEeEEEECcCCcc
Confidence 344455555667888877 6788887764 2 567888777799999999999764
No 223
>PRK09897 hypothetical protein; Provisional
Probab=98.62 E-value=3.4e-07 Score=93.86 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGNGFG 83 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G--~~V~vlE~~~~~G 83 (530)
+++|+|||||++|+++|.+|.+.+ .+|+|+|++..+|
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 358999999999999999999864 5899999988887
No 224
>PRK02106 choline dehydrogenase; Validated
Probab=98.61 E-value=4.4e-07 Score=95.33 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=43.1
Q ss_pred HhcCCEEEcCceeeEEEecCCCCeEEEEEEC--Ce---eEecCEEEEccChhhHHHhhhhc
Q 009646 259 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELIKNS 314 (530)
Q Consensus 259 ~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~---~~~ad~VV~a~~~~~~~~ll~~~ 314 (530)
.+.+.+|++++.|++|..++ +++++|... ++ .+.++.||+|+|.....+||..+
T Consensus 212 ~~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~S 270 (560)
T PRK02106 212 KRPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLS 270 (560)
T ss_pred CCCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhc
Confidence 34579999999999999986 677777763 22 46899999999999888887654
No 225
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.60 E-value=6.2e-07 Score=97.43 Aligned_cols=43 Identities=47% Similarity=0.648 Sum_probs=39.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
...+||+|||||++||+||+.|+++|++|+|+|+.+.+||.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3567999999999999999999999999999999989999855
No 226
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.59 E-value=1.7e-06 Score=96.45 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
..+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~ 203 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLL 203 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeee
Confidence 458999999999999999999999999999999999999854
No 227
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.59 E-value=4.5e-07 Score=82.92 Aligned_cols=37 Identities=32% Similarity=0.585 Sum_probs=35.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
.|||||+|++||+|+-.|...|-.|+++|+...+||.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 6999999999999999999998889999999999998
No 228
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.59 E-value=1.8e-06 Score=90.03 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=35.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
...+||+|||+|++||+||+.+++. .+|+|+||....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 3458999999999999999999987 899999999887775
No 229
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.58 E-value=5.2e-06 Score=81.73 Aligned_cols=195 Identities=10% Similarity=0.067 Sum_probs=111.0
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhcc
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 327 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~ 327 (530)
..+...+.+.+.++|++++.+++|++|..++ +.+..|.++++++.||.||+|+|++... +.+ .+ +..
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~-l~~-~~---------~~~ 203 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE-LLP-LP---------LRP 203 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh-ccc-CC---------ccc
Confidence 3577788888899999999999999999876 6677788877799999999999998765 433 11 111
Q ss_pred ccceeEEEEEEEeccCCC-C-CCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHH
Q 009646 328 LASIDVVSVKLWFDKKVT-V-PNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAV 405 (530)
Q Consensus 328 l~~~~~~~v~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eei~~~~l 405 (530)
.. . ..+.+..+.. . ..+..... . .. ..++- + ..++.+..........+....+++..+.++
T Consensus 204 ~~---g--~~~~~~~~~~~~~~~~~~~~~-~--~~-~~y~~-----p---~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~ 266 (337)
T TIGR02352 204 VR---G--QPLRLEAPAVPLLNRPLRAVV-Y--GR-RVYIV-----P---RRDGRLVVGATMEESGFDTTPTLGGIKELL 266 (337)
T ss_pred cC---c--eEEEeeccccccCCcccceEE-E--cC-CEEEE-----E---cCCCeEEEEEeccccCccCCCCHHHHHHHH
Confidence 11 0 1122222110 0 00100000 0 00 01110 0 122333322222212222233456778899
Q ss_pred HHHhHhhcCCCCCccccceEEeCCCCceecCCCCcccCCCC--CCCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHH
Q 009646 406 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG--FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 483 (530)
Q Consensus 406 ~~L~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~~~--~~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~i 483 (530)
+.+.++||.+....+...+ .+....+++. .|.+ ....+|+|+++.+.+.|+. .+...|+..|+.|
T Consensus 267 ~~~~~~~P~l~~~~~~~~~-----~g~r~~t~D~---~piig~~~~~~~~~~~~g~~g~G~~-----~~p~~g~~la~~i 333 (337)
T TIGR02352 267 RDAYTILPALKEARLLETW-----AGLRPGTPDN---LPYIGEHPEDRRLLIATGHYRNGIL-----LAPATAEVIADLI 333 (337)
T ss_pred HHHHHhCCCcccCcHHHhe-----ecCCCCCCCC---CCEeCccCCCCCEEEEcccccCcee-----hhhHHHHHHHHHH
Confidence 9999999987654443332 2233334442 2222 2234799999988854443 4777899999988
Q ss_pred HH
Q 009646 484 VD 485 (530)
Q Consensus 484 l~ 485 (530)
+.
T Consensus 334 ~~ 335 (337)
T TIGR02352 334 LG 335 (337)
T ss_pred hc
Confidence 73
No 230
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.58 E-value=1.7e-07 Score=91.62 Aligned_cols=42 Identities=17% Similarity=0.435 Sum_probs=38.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
...+||+|||||.+|.-||.-.+.+|.++.++|+++...|..
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 346999999999999999999999999999999999988873
No 231
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.57 E-value=1.1e-06 Score=82.41 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=50.4
Q ss_pred CCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC----C--eeEecCEEEEccChhhHHHhh
Q 009646 244 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTLQELI 311 (530)
Q Consensus 244 gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~----~--~~~~ad~VV~a~~~~~~~~ll 311 (530)
+++...+...+.+.|+++|.+++++++|+.++.++ +|.+ .+... + ++++||.+.+++|-....+=|
T Consensus 248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~-dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GL 319 (506)
T KOG1335|consen 248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNG-DGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGL 319 (506)
T ss_pred cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccC-CCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCC
Confidence 55666788888888899999999999999999987 5544 33332 2 379999999999977655333
No 232
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.55 E-value=2e-06 Score=73.96 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=33.4
Q ss_pred HHHHHHhcCCEEE-cCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccCh
Q 009646 254 WMDSMRTRGCEFL-DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 304 (530)
Q Consensus 254 l~~~l~~~G~~i~-~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~ 304 (530)
+.+.+ ..|++|. ...+|+.|...+ +....+..+|..+.+|.||+|+|.
T Consensus 107 ~~~~~-~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 107 LLARL-PAGITVRHVRAEVVDIRRDD--DGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHhh-cCCcEEEEEeeEEEEEEEcC--CcEEEEECCCCEEEeCEEEECCCC
Confidence 44444 3465554 467899999987 334445556778999999999984
No 233
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.55 E-value=2.7e-06 Score=87.58 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDD 78 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~ 78 (530)
..|||+|||||++|++||.+|++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 358999999999999999999999999999998
No 234
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.54 E-value=3.9e-06 Score=78.91 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=43.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCCC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIKP 108 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~~ 108 (530)
.....||||||||++|.+-|+.|++.|.+|+|+||.-.-.-|+=+-+..+. -...+.++|+++
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPG--G~~~L~~LGl~D 104 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPG--GYLALSKLGLED 104 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcc--hhHHHHHhCHHH
Confidence 345689999999999999999999999999999997543222111111111 114567788763
No 235
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.53 E-value=7.7e-07 Score=92.96 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=42.6
Q ss_pred HhcCCEEEcCceeeEEEecCCCCeEEEEEEC--Ce---eEecCEEEEccChhhHHHhhhhc
Q 009646 259 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELIKNS 314 (530)
Q Consensus 259 ~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~---~~~ad~VV~a~~~~~~~~ll~~~ 314 (530)
.+.+++|++++.|++|..++ +++++|+.. ++ .+.++.||+|+|...+.+||..+
T Consensus 205 ~r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~S 263 (532)
T TIGR01810 205 KRPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLS 263 (532)
T ss_pred cCCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhc
Confidence 35579999999999999876 777787763 22 35789999999997777777654
No 236
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.50 E-value=9e-07 Score=86.04 Aligned_cols=48 Identities=29% Similarity=0.374 Sum_probs=37.1
Q ss_pred HHHHHHh-cCCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccCh
Q 009646 254 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 304 (530)
Q Consensus 254 l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~ 304 (530)
+.+.+++ .+++|. ..+|+.|..++ +++.+|.+. ++++.+|.||+|+|.
T Consensus 101 ~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 101 MREKLESHPNLTII-QGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHTSTTEEEE-ES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHhcCCCeEEE-EcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence 4444555 467885 67899999987 889999987 568999999999998
No 237
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.48 E-value=8.8e-06 Score=85.27 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCC-CCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~-~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
+...+...+.+.+++|+.++.|+++..+++ +|++.+|.. +++ .+.|+.||+|+|.+.
T Consensus 128 ~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 128 YKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred HHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 444556666667789999999999998641 167777764 233 588999999999975
No 238
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.46 E-value=1.6e-06 Score=88.75 Aligned_cols=64 Identities=23% Similarity=0.372 Sum_probs=49.4
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 313 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~ 313 (530)
.+.+.+.+.+.+++.|++++++++|++|..+ +.+..+.++++++.+|.||+|+|......++.+
T Consensus 190 ~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~ 253 (444)
T PRK09564 190 DKEITDVMEEELRENGVELHLNEFVKSLIGE---DKVEGVVTDKGEYEADVVIVATGVKPNTEFLED 253 (444)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHh
Confidence 3456777888888999999999999999653 344556677778999999999997655545543
No 239
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.42 E-value=8.6e-06 Score=90.05 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
..+||+|||||++||+||..++++|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 458999999999999999999999999999999864
No 240
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.39 E-value=1.1e-05 Score=81.90 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 305 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~ 305 (530)
.+.+.+.+.+.|+++|++|+++++|++|..+ .+ +..+|+++.+|.||+|+|..
T Consensus 227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~v--~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 227 DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----EV--VLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----EE--EECCCCEEEccEEEEccCCC
Confidence 3456677788889999999999999999642 22 23456789999999999854
No 241
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.39 E-value=9.8e-06 Score=83.31 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=44.9
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECC---eeEecCEEEEccChhhHHHh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~---~~~~ad~VV~a~~~~~~~~l 310 (530)
...+.+.+.+.|++.|++|++++.+++|...+ +.+.....++ +++.+|.||+|+|......+
T Consensus 219 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 219 DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 34566778888889999999999999998765 4332222233 37999999999997654433
No 242
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.36 E-value=2.3e-06 Score=87.14 Aligned_cols=60 Identities=10% Similarity=0.147 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 312 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~ 312 (530)
...+.+.+.+.+++.|++++++++|++|+. ..+ +..+++++.+|.||+|+|......++.
T Consensus 188 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~~v--~~~~g~~~~~D~vl~a~G~~pn~~~l~ 247 (438)
T PRK13512 188 DADMNQPILDELDKREIPYRLNEEIDAING----NEV--TFKSGKVEHYDMIIEGVGTHPNSKFIE 247 (438)
T ss_pred CHHHHHHHHHHHHhcCCEEEECCeEEEEeC----CEE--EECCCCEEEeCEEEECcCCCcChHHHH
Confidence 345666788888899999999999999963 222 223466899999999999776554443
No 243
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2e-05 Score=73.97 Aligned_cols=238 Identities=15% Similarity=0.196 Sum_probs=132.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc-------------------cc-------------cccc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD-------------------IS-------------FWYP 93 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~-------------------~g-------------~~~~ 93 (530)
..|||+|+|.|+.-..-+..|+-+|.+|+++|+++.-|+... .+ ++..
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A 84 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFA 84 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcc
Confidence 369999999999999999999999999999999999998711 00 1112
Q ss_pred cccHHHHHHHhCCCCCCCcccc--eeeccCCcccccccccCCCCCCCcccchhhhhccCCchhhhhccchhHHHhhhccC
Q 009646 94 FRNIFSLVDELGIKPFTGWMKS--AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDN 171 (530)
Q Consensus 94 ~~~~~~~~~~lg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (530)
...+..++.+-|+..+..+.+. ..+...+.. ..+|..-...+ ....+++..+....+.+..+..+..
T Consensus 85 ~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~---------~kVP~ne~ei~--~s~~lsL~eKr~vmrFl~~V~n~~~ 153 (434)
T COG5044 85 NSELLKILIETGVTEYLEFKQISGSFLYRPGKI---------YKVPYNEAEIF--TSPLLSLFEKRRVMRFLKWVSNYAE 153 (434)
T ss_pred cchHHHHHHHhChHhheeeeeccccEEecCCcE---------EECCccHHhhh--cCCCcchhhHHHHHHHHHHHHhHHh
Confidence 3345556666666544433321 111111111 11221111111 1223344444333333322222221
Q ss_pred cchhhhccc--CccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhh--cCcceeEeecCCCc
Q 009646 172 TDVAWRKYD--SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH--QKNFDLVWCRGTLR 247 (530)
Q Consensus 172 ~~~~~~~~~--~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~--~~~~~~~~~~gg~~ 247 (530)
....+..+. .-+.+...+.++++....+.+...++. ..+ .+..+..+...+..+...- .+.....+|+-|.
T Consensus 154 ~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l---~ld-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl- 228 (434)
T COG5044 154 QKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIAL---SLD-LDIPAREALERILRYMRSFGDYGKSPYLYPRYGL- 228 (434)
T ss_pred hhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhh---hcc-ccCCchHHHHHHHHHHHhhcccCCCcceeeccCc-
Confidence 122222222 224455566677765543333332221 112 4445555555554443322 2334455677554
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEcc
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAV 302 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~ 302 (530)
..|.+.+.+...-.|+++.+|+++.+|.... . |..|..++.++.|..||..-
T Consensus 229 ~El~QGFaRssav~GgtymLn~~i~ein~tk--~-v~~v~~~~~~~ka~KiI~~~ 280 (434)
T COG5044 229 GELSQGFARSSAVYGGTYMLNQAIDEINETK--D-VETVDKGSLTQKAGKIISSP 280 (434)
T ss_pred hhhhHHHHHhhhccCceeecCcchhhhcccc--c-eeeeecCcceeecCcccCCc
Confidence 4588888877777799999999999998765 2 45666667788888888643
No 244
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.34 E-value=1.2e-06 Score=88.79 Aligned_cols=45 Identities=27% Similarity=0.224 Sum_probs=40.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEcCCCCCCCCcccc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSK--QGFDVTVLDDGNGFGSPDDIS 89 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~--~G~~V~vlE~~~~~GG~~~~g 89 (530)
..+++|+|||||+|||+||..|++ .|++|+|+|+.+.+||.+..|
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~g 70 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSG 70 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeec
Confidence 345789999999999999999997 699999999999999986644
No 245
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.34 E-value=6e-06 Score=84.78 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
+||+|||||.+|+.+|..+++.|.+|+|+|++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccc
Confidence 6999999999999999999999999999998743
No 246
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.33 E-value=4.9e-06 Score=86.37 Aligned_cols=56 Identities=27% Similarity=0.342 Sum_probs=42.6
Q ss_pred HHHhcCCEEEcCceeeEEEecCCCCeEEEEEE--CC----e-eEecCEEEEccChhhHHHhhhhc
Q 009646 257 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK----E-TYSAGAVVLAVGISTLQELIKNS 314 (530)
Q Consensus 257 ~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~--~~----~-~~~ad~VV~a~~~~~~~~ll~~~ 314 (530)
.+++.+.+|.+++.|++|..++ +++++|.. .+ + .+.++.||++++.....+||..+
T Consensus 212 a~~~~nl~v~t~a~v~ri~~~~--~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~S 274 (542)
T COG2303 212 ALKRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLS 274 (542)
T ss_pred HhcCCceEEecCCEEEEEEEEC--CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhc
Confidence 3455569999999999999997 66555554 32 2 35778999999999888887654
No 247
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.30 E-value=1.9e-05 Score=81.01 Aligned_cols=38 Identities=37% Similarity=0.615 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
++||+|||||.+|+.+|..|++.|.+|+|+|++ .+||.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~ 38 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGA 38 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCc
Confidence 358999999999999999999999999999986 47775
No 248
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=1.9e-05 Score=74.83 Aligned_cols=150 Identities=11% Similarity=0.111 Sum_probs=93.3
Q ss_pred cCCchhhhhccchhHHHhhhc--cCcchhhhcccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHH
Q 009646 149 SRLPLVDRLTSLPLMAAVIDF--DNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGIL 226 (530)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 226 (530)
+.+...++..+++.+.....+ ...+..+.++...++.+||+..++++.+-.-++.... .. +..+.+....+...
T Consensus 188 k~LTivEKr~LMKFltfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~lqs~vl~aIa--M~--~~~~~tt~eGm~at 263 (547)
T KOG4405|consen 188 KSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPKLQSIVLHAIA--ML--SESQLTTIEGMDAT 263 (547)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChhhHHHHHHHHH--hc--CcccccHHHHHHHH
Confidence 445555554445544444444 3445566677788999999999998875333333322 22 23334444333333
Q ss_pred HHHH--HhhcCcceeEeecCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCe-EEEEEECCeeEecCEEEEccC
Q 009646 227 YFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC-ISDVVCGKETYSAGAVVLAVG 303 (530)
Q Consensus 227 ~~~~--~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~-v~~v~~~~~~~~ad~VV~a~~ 303 (530)
..+. ++.++...+.+|--|.+ .|.+.+.+...-.|+=..+..+|+.|..+....+ ...+...|+++.+.++|++-.
T Consensus 264 ~~fl~slGrfgntpfLfPlYGqG-ELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~ 342 (547)
T KOG4405|consen 264 KNFLTSLGRFGNTPFLFPLYGQG-ELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSPS 342 (547)
T ss_pred HHHHHHhhccCCCcceeeccCCC-cchHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecCc
Confidence 3333 23344555667764444 4899999888888999999999999998862222 123445588999999988644
No 249
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.28 E-value=8.6e-07 Score=88.41 Aligned_cols=41 Identities=34% Similarity=0.556 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
...+|+|||||+|||++|..|.+.|++|+|+||.+.+||-+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW 45 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW 45 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE
Confidence 45799999999999999999999999999999999999974
No 250
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.25 E-value=9.4e-05 Score=67.53 Aligned_cols=184 Identities=17% Similarity=0.128 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhccccChHHHHhhccc
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 328 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l 328 (530)
.+...|.+++.++|+++... +|++++.-. .-.+|.||.|+|.+.-. |..+..
T Consensus 152 ~ylpyl~k~l~e~Gvef~~r-~v~~l~E~~-------------~~~~DVivNCtGL~a~~-L~gDd~------------- 203 (342)
T KOG3923|consen 152 KYLPYLKKRLTENGVEFVQR-RVESLEEVA-------------RPEYDVIVNCTGLGAGK-LAGDDD------------- 203 (342)
T ss_pred hhhHHHHHHHHhcCcEEEEe-eeccHHHhc-------------cCCCcEEEECCcccccc-ccCCcc-------------
Confidence 36666888888999998543 555553211 13579999999988644 555431
Q ss_pred cceeEEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 009646 329 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYL 408 (530)
Q Consensus 329 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eei~~~~l~~L 408 (530)
..|+....+..+.|+.. +..+..+ .. .+ + .|...+++.........|......+-...+++..
T Consensus 204 -~yPiRGqVl~V~ApWvk---hf~~~D~--~~--ty-----~----iP~~~~V~lGg~~Q~g~w~~ei~~~D~~dIl~rc 266 (342)
T KOG3923|consen 204 -LYPIRGQVLKVDAPWVK---HFIYRDF--SR--TY-----I----IPGTESVTLGGTKQEGNWNLEITDEDRRDILERC 266 (342)
T ss_pred -eeeccceEEEeeCCcee---EEEEecC--Cc--cE-----E----ecCCceEEEccccccCcccCcCChhhHHHHHHHH
Confidence 12222233444544421 1011000 00 00 0 1233455444444445555444555566778888
Q ss_pred hHhhcCCCCCccccceEEeCCCCceecCCCCcccCC--CCC-CCCCceEEeeccccCCCCCCcchHHHHHHHHHHHHHHH
Q 009646 409 SKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM--RGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 485 (530)
Q Consensus 409 ~~~~p~~~~~~i~~~~~~~~~~a~~~~~~g~~~~~~--~~~-~~~~~l~~aG~~~~~g~~~~~iega~~sG~~aA~~il~ 485 (530)
.++.|.++.+.++.-++. +.|+....|- ... ..-.++-.+-++-++|.+ +--++-++..||+.+++
T Consensus 267 ~aL~P~l~~a~ii~E~vG--------lRP~Rk~vRlE~e~~~~~~k~~~VVHnYGHgG~G---~Tl~wGtAlea~~Lv~~ 335 (342)
T KOG3923|consen 267 CALEPSLRHAEIIREWVG--------LRPGRKQVRLEAELRTRGGKRLTVVHNYGHGGNG---FTLGWGTALEAAKLVLD 335 (342)
T ss_pred HHhCcccccceehhhhhc--------ccCCCCceeeeeeeecCCCccceeEeeccCCCCc---eecccchHHHHHHHHHH
Confidence 889999887666655443 4444321111 111 112344456677666554 34456678888888887
Q ss_pred HhC
Q 009646 486 YLG 488 (530)
Q Consensus 486 ~~~ 488 (530)
.++
T Consensus 336 ~l~ 338 (342)
T KOG3923|consen 336 ALG 338 (342)
T ss_pred Hhh
Confidence 765
No 251
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.23 E-value=5.3e-06 Score=76.93 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=48.6
Q ss_pred CCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhH
Q 009646 244 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 307 (530)
Q Consensus 244 gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~ 307 (530)
.++.+.+.+.+.+.++..|++++.++.++++.... +|....+.+.+....+|.+++|+|-...
T Consensus 226 R~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~-~g~~~~i~~~~~i~~vd~llwAiGR~Pn 288 (478)
T KOG0405|consen 226 RGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTD-DGLELVITSHGTIEDVDTLLWAIGRKPN 288 (478)
T ss_pred cchhHHHHHHHHHHhhhcceeecccccceeeeecC-CCceEEEEeccccccccEEEEEecCCCC
Confidence 44566677778888899999999999999999876 4644455555645569999999997643
No 252
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.22 E-value=1.4e-06 Score=84.30 Aligned_cols=42 Identities=31% Similarity=0.533 Sum_probs=39.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
...+++|||||++|++||..|++.|++|.|+||++.+||++.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence 456799999999999999999999999999999999999944
No 253
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.22 E-value=1.6e-06 Score=94.56 Aligned_cols=42 Identities=33% Similarity=0.500 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
..+||+|||||+|||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 457999999999999999999999999999999999999854
No 254
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.21 E-value=1.1e-05 Score=73.91 Aligned_cols=41 Identities=34% Similarity=0.564 Sum_probs=36.1
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCCC
Q 009646 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNGFG 83 (530)
Q Consensus 43 ~~~~~~dVvIIGaG~aGL~aA~~La~~--G~~V~vlE~~~~~G 83 (530)
.+...+|.||||||+.|+++|..|.-+ +.+|.|+|+...++
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 455789999999999999999999877 78999999987654
No 255
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.20 E-value=1.5e-06 Score=89.14 Aligned_cols=39 Identities=23% Similarity=0.473 Sum_probs=36.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
+|||+|||||++|++||.++++.|++|+|+|+.+.+||.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~ 41 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGT 41 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeee
Confidence 489999999999999999999999999999987788987
No 256
>PLN02785 Protein HOTHEAD
Probab=98.18 E-value=8.2e-05 Score=77.95 Aligned_cols=36 Identities=36% Similarity=0.504 Sum_probs=32.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
..+||+||||||.+|+..|.+|++ +.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 456999999999999999999999 699999999753
No 257
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=7.7e-05 Score=73.97 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..|||||||||-||.-||+..++-|.+++++=-+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 3499999999999999999999999999998654
No 258
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.12 E-value=2.9e-06 Score=87.21 Aligned_cols=39 Identities=31% Similarity=0.524 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
.+|||+|||||++|++||.+|++.|.+|+|+|+ +.+||.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~ 40 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGT 40 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccc
Confidence 459999999999999999999999999999999 678885
No 259
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.10 E-value=3.1e-05 Score=75.90 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=47.4
Q ss_pred ecCCCcchhHHHHHHHHHh-cCCEEEcCceeeEEEecCCCC-eEEEEEEC---C--eeEecCEEEEccChh
Q 009646 242 CRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERC-CISDVVCG---K--ETYSAGAVVLAVGIS 305 (530)
Q Consensus 242 ~~gg~~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g-~v~~v~~~---~--~~~~ad~VV~a~~~~ 305 (530)
..+..+..+...|.+.+.+ .+++|+.++.+.+|..++ + .+.++.+. + ..+.++.||+|+|.-
T Consensus 127 ~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~--~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 127 AADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIED--GIGVAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred ecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcC--CceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 3355566788889888866 599999999999999887 5 34356553 2 478999999999954
No 260
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.10 E-value=3.8e-06 Score=91.22 Aligned_cols=43 Identities=37% Similarity=0.559 Sum_probs=39.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
...++|+|||||+|||+||+.|+++|++|+|+|+.+.+||.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 3567999999999999999999999999999999999999864
No 261
>PRK14727 putative mercuric reductase; Provisional
Probab=98.10 E-value=4.4e-06 Score=86.03 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=46.9
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~l 310 (530)
...+.+.+.+.+++.|++++++++|++|+.++ +.+ .+..+++++.+|.||+|+|......+
T Consensus 227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~-~v~~~~g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 227 DPLLGETLTACFEKEGIEVLNNTQASLVEHDD--NGF-VLTTGHGELRAEKLLISTGRHANTHD 287 (479)
T ss_pred hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEE-EEEEcCCeEEeCEEEEccCCCCCccC
Confidence 34466677888889999999999999998765 433 35555667999999999998765543
No 262
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.08 E-value=7.6e-05 Score=81.45 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhHHHhhh
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIK 312 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll~ 312 (530)
...+.+.+.++++|++|++++.|++|..++ ++.+..+.. +++++.+|.||+|+|......++.
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~ 251 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFSTGIRPQDKLAT 251 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECCCcccCchHHh
Confidence 345567788889999999999999997643 233334444 466899999999999876655543
No 263
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.06 E-value=0.00012 Score=72.74 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 307 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~ 307 (530)
.+...+.+.+++.|++++++++|++|.. +. +.+ +++++.+|.||+|+|....
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~~---v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD----GA---LILADGRTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC----Ce---EEeCCCCEEecCEEEEccCCChh
Confidence 4556677788899999999999999852 32 333 4678999999999996543
No 264
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.06 E-value=9.2e-06 Score=81.19 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=38.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCeEEEEcCCCCCCCCcccc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLS-KQGFDVTVLDDGNGFGSPDDIS 89 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La-~~G~~V~vlE~~~~~GG~~~~g 89 (530)
..++|+|||||+|||.||.+|. +.|++|+|+|+.+.+||.+..|
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 3468999999999999999765 5699999999999999996633
No 265
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.04 E-value=3.7e-05 Score=76.86 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=35.3
Q ss_pred HhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhh
Q 009646 259 RTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 306 (530)
Q Consensus 259 ~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~ 306 (530)
++.|++++++++|++|..+. . .+.++++++.+|+||+|+|...
T Consensus 69 ~~~gv~~~~~~~V~~id~~~--~---~v~~~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 69 EQFNLRLFPHTWVTDIDAEA--Q---VVKSQGNQWQYDKLVLATGASA 111 (377)
T ss_pred HhCCCEEECCCEEEEEECCC--C---EEEECCeEEeCCEEEECCCCCC
Confidence 56789999999999998765 3 3446777899999999999753
No 266
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.02 E-value=7.8e-06 Score=83.99 Aligned_cols=43 Identities=42% Similarity=0.622 Sum_probs=39.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
...++|+|||||++||++|..|+++|++|+|+|+.+.+||.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3457999999999999999999999999999999999998754
No 267
>PTZ00367 squalene epoxidase; Provisional
Probab=98.01 E-value=7e-06 Score=85.28 Aligned_cols=60 Identities=25% Similarity=0.214 Sum_probs=43.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC-CCCCcccccccccccHHHHHHHhCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG-FGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~-~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
.++||+|||||++|+++|+.|+++|++|+|+|+... ...+. .|.. -.++..+.++++|+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~-~G~~-L~p~g~~~L~~LGL~ 92 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRI-VGEL-LQPGGVNALKELGME 92 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchh-hhhh-cCHHHHHHHHHCCCh
Confidence 468999999999999999999999999999999751 11111 1111 234456777888875
No 268
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.00 E-value=7.5e-06 Score=80.52 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
+.||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 369999999999999999999999999999987654
No 269
>PRK13748 putative mercuric reductase; Provisional
Probab=97.99 E-value=6.8e-06 Score=86.73 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=47.1
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~l 310 (530)
...+.+.+.+.+++.|++|+++++|++|+.++ +.+ .+.++++++.+|.||+|+|......+
T Consensus 309 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 309 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEF-VLTTGHGELRADKLLVATGRAPNTRS 369 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEecCCeEEeCEEEEccCCCcCCCC
Confidence 34566778888889999999999999998765 443 35555568999999999997655433
No 270
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.98 E-value=0.0001 Score=74.09 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATV 179 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 357999999999999999999999999999987543
No 271
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.96 E-value=1.4e-05 Score=84.19 Aligned_cols=46 Identities=17% Similarity=0.399 Sum_probs=38.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC-CCCCCC-cccccc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG-NGFGSP-DDISFW 91 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~-~~~GG~-~~~g~~ 91 (530)
.+|||+|||+|.+|..||..+++.|.+|+|+|++ +.+||. +..|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCi 162 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCI 162 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCc
Confidence 3789999999999999999999999999999974 357775 444444
No 272
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.95 E-value=1.1e-05 Score=86.50 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
...++|+|||||+|||+||++|++.|++|+|+|+.+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence 4567999999999999999999999999999998654
No 273
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.92 E-value=0.00015 Score=72.40 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=40.2
Q ss_pred HHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhHHHhh
Q 009646 254 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI 311 (530)
Q Consensus 254 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll 311 (530)
+.+.+++.|++++++++|++|..++ +.+ .+.. +++++.+|.||+|+|......++
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~g~~i~~D~vI~a~G~~p~~~l~ 244 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTD--SGI-RATLDSGRSIEVDAVIAAAGLRPNTALA 244 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccC--CEE-EEEEcCCcEEECCEEEECcCCCcchHHH
Confidence 3444567899999999999998765 433 3443 46689999999999976544343
No 274
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.91 E-value=1.4e-05 Score=85.22 Aligned_cols=42 Identities=38% Similarity=0.550 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
..++|+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999865
No 275
>PRK10262 thioredoxin reductase; Provisional
Probab=97.91 E-value=1.2e-05 Score=78.38 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=35.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
..+||+|||||++||+||..|++.|++++|+|+. ..||.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~ 44 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQL 44 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCce
Confidence 4589999999999999999999999999999964 678773
No 276
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.90 E-value=0.00012 Score=71.56 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=74.7
Q ss_pred cccCccHHHHHHHhCCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHHHHHHHHhhcCcceeEeecCCCcchhHHHHHHH
Q 009646 178 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS 257 (530)
Q Consensus 178 ~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~ 257 (530)
.+...+.+++|++.|+++.+.+.++.+.....++.+ .++.+.. .+..+.. ...+..-..|| +.++++.|.
T Consensus 66 ~~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~---G~vSla~---a~~gl~sV~GG-N~qI~~~ll-- 135 (368)
T PF07156_consen 66 NLTKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFA---GLVSLAG---ATGGLWSVEGG-NWQIFEGLL-- 135 (368)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhh---hheeeee---ccCCceEecCC-HHHHHHHHH--
Confidence 345567899999999999999999999888888875 3444432 2222211 11223334555 567777776
Q ss_pred HHhcCCEEEcCceeeEEE-ecCCCCe-EEEEEEC---Ce-eEecCEEEEccChhh
Q 009646 258 MRTRGCEFLDGRRVTDFI-YDEERCC-ISDVVCG---KE-TYSAGAVVLAVGIST 306 (530)
Q Consensus 258 l~~~G~~i~~~~~V~~I~-~~~~~g~-v~~v~~~---~~-~~~ad~VV~a~~~~~ 306 (530)
++.|+++ ++++|++|. ..+ ++. ...|... +. .-.+|.||+|+|...
T Consensus 136 -~~S~A~v-l~~~Vt~I~~~~~-~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 136 -EASGANV-LNTTVTSITRRSS-DGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred -HHccCcE-ecceeEEEEeccC-CCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 4568999 999999993 333 232 2233332 22 345699999999853
No 277
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.90 E-value=1.3e-05 Score=82.85 Aligned_cols=63 Identities=17% Similarity=0.119 Sum_probs=46.5
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI 311 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll 311 (530)
...+.+.+.+.+++.|+++++++.|++|...+ +.+..+..+++++.+|.||+|+|.....+++
T Consensus 221 d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l 283 (499)
T PTZ00052 221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSDGTTELFDTVLYATGRKPDIKGL 283 (499)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECCCCEEEcCEEEEeeCCCCCcccc
Confidence 33456778888889999999999999998754 3332222346689999999999977655443
No 278
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.89 E-value=1.8e-05 Score=81.04 Aligned_cols=62 Identities=26% Similarity=0.394 Sum_probs=47.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCccccc---cccc---ccHHHHHHHhCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISF---WYPF---RNIFSLVDELGIK 107 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~---~~~~---~~~~~~~~~lg~~ 107 (530)
..++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+..|. ..+. ....+.++++|++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~ 207 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIE 207 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCE
Confidence 457899999999999999999999999999999999999754221 1111 1234556677766
No 279
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.88 E-value=1.7e-05 Score=84.47 Aligned_cols=62 Identities=29% Similarity=0.454 Sum_probs=47.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccc---cccccc---cHHHHHHHhCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDIS---FWYPFR---NIFSLVDELGIK 107 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g---~~~~~~---~~~~~~~~lg~~ 107 (530)
..++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+..| |..+.. ...++++++|++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~ 376 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGID 376 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeE
Confidence 46889999999999999999999999999999999999985422 222211 123456667765
No 280
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.85 E-value=1.7e-05 Score=78.54 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=33.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G 83 (530)
.||+|||||++|+.||+.|++.|++|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 389999999999999999999999999999887664
No 281
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=2.7e-05 Score=72.06 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=50.3
Q ss_pred cCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEE--EEC-C--eeEecCEEEEccChhhHHHhh
Q 009646 243 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDV--VCG-K--ETYSAGAVVLAVGISTLQELI 311 (530)
Q Consensus 243 ~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v--~~~-~--~~~~ad~VV~a~~~~~~~~ll 311 (530)
-.|+.+.+.+.+.+.+++.|+++.-....++|++.+ +|+.... .++ + .+-.+|.|++|+|-..+.+-+
T Consensus 233 LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~-~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l 305 (503)
T KOG4716|consen 233 LRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQID-DGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDL 305 (503)
T ss_pred cccccHHHHHHHHHHHHHhCCceeecccceeeeecc-CCcEEEEeecccccccccchhhhhhhhhccccchhhc
Confidence 366778899999999999999999998899998876 4652211 112 2 256789999999987665433
No 282
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.83 E-value=2.3e-05 Score=70.68 Aligned_cols=33 Identities=36% Similarity=0.689 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
||+|||||++|++||..|++.|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999988753
No 283
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.81 E-value=3.2e-05 Score=76.45 Aligned_cols=43 Identities=35% Similarity=0.414 Sum_probs=39.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
...++|+|||||.+|+.+|..|++.|++|+|+|+.+.+||.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 3457999999999999999999999999999999999998753
No 284
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.80 E-value=3e-05 Score=79.78 Aligned_cols=42 Identities=43% Similarity=0.564 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
..++|+|||||++|+++|..|+++|++|+|+|+.+++||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 347999999999999999999999999999999999998754
No 285
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.80 E-value=2.8e-05 Score=73.24 Aligned_cols=60 Identities=27% Similarity=0.269 Sum_probs=47.2
Q ss_pred CCCCcceeecCcCCcCccCCccccCCCCCCCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCCCCCccccc
Q 009646 17 RYRNGFCCRASTLQSNANGDRNSTNNNGKNKKKIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNGFGSPDDISF 90 (530)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaG~aGL~aA~~La~~--G~~V~vlE~~~~~GG~~~~g~ 90 (530)
+..+.++|...+++++. +.|+|||+|+||+.+|.+|.++ +.+|+|+|+.+.++|-+.-|.
T Consensus 4 ~~~~~~~~r~~s~qs~~--------------p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV 65 (468)
T KOG1800|consen 4 RGASPSFCRHFSTQSST--------------PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV 65 (468)
T ss_pred cchhhHHHHHhhhccCC--------------ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc
Confidence 34455556665655555 5899999999999999999985 589999999999999855333
No 286
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.80 E-value=4.2e-05 Score=76.94 Aligned_cols=61 Identities=36% Similarity=0.462 Sum_probs=47.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc---cccccccc---cHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD---ISFWYPFR---NIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~---~g~~~~~~---~~~~~~~~lg~~ 107 (530)
..+|+|||||++||+||+.|++.|++|+|+|+.+..||++. ..|+.+.. ...+++++.|++
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~ 189 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVE 189 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeE
Confidence 37899999999999999999999999999999999999965 22333322 344556666654
No 287
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.79 E-value=2.4e-05 Score=82.79 Aligned_cols=41 Identities=39% Similarity=0.598 Sum_probs=38.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
..++|+|||+|++||+||-.|-+.|+.|+|+||++++||-+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll 1824 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLL 1824 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCcee
Confidence 45789999999999999999999999999999999999973
No 288
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.78 E-value=2.7e-05 Score=79.88 Aligned_cols=62 Identities=11% Similarity=0.216 Sum_probs=46.9
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhHHHh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~~~l 310 (530)
...+.+.+.+.|++.|+++++++.|++|..++ ++. ..+.. +++++.+|.||+|+|......+
T Consensus 230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNA-DGS-KHVTFESGKTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-Cce-EEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence 45677788888999999999999999998764 243 23333 4668999999999997654443
No 289
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.78 E-value=0.00032 Score=68.48 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G-~~V~vlE~~~~~ 82 (530)
.+|+|+||.|+++|+-|..|.+.+ .+++.||+.+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 479999999999999999999986 899999998755
No 290
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.77 E-value=5.4e-05 Score=56.77 Aligned_cols=35 Identities=29% Similarity=0.613 Sum_probs=33.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G 83 (530)
+|+|||||..|+-.|..|++.|.+|+|+|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 48999999999999999999999999999998775
No 291
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.00025 Score=69.84 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CeEEEEcCCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQG---FDVTVLDDGNGFGS 84 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G---~~V~vlE~~~~~GG 84 (530)
+++|+|||+|++|+..|.+|.+.- ..|.|+|+.+.+|+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 479999999999999999999862 23999999998874
No 292
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.76 E-value=0.0001 Score=80.38 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=34.4
Q ss_pred HhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhh
Q 009646 259 RTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 306 (530)
Q Consensus 259 ~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~ 306 (530)
++.|++++++++|++|+.+. .. .+..++.++.+|++|+|+|...
T Consensus 65 ~~~gv~~~~g~~V~~Id~~~--k~--V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDTDQ--KQ--VITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHCCCEEEcCCeEEEEECCC--CE--EEECCCcEeeCCEEEECCCCCc
Confidence 56799999999999998765 32 2233456899999999999753
No 293
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.74 E-value=3.8e-05 Score=79.40 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=38.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
...++||+|||||.|||.||..++++|.+|+|+||....+|.
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 346789999999999999999999999999999999888876
No 294
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.74 E-value=4e-05 Score=78.62 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECC--eeEecCEEEEccChhhHH
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~--~~~~ad~VV~a~~~~~~~ 308 (530)
..+.+.+.+.+++.|++|+++++|++|+.++ ..+ .+..++ .++.+|.||+|+|.....
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v-~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYK--KQA-LFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEE-EEEECCceEEEEeCEEEEecCCccCC
Confidence 4466678888888999999999999998654 433 344444 369999999999966443
No 295
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.71 E-value=5e-05 Score=79.96 Aligned_cols=63 Identities=30% Similarity=0.529 Sum_probs=47.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCccc---cccccc---ccHHHHHHHhCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDI---SFWYPF---RNIFSLVDELGIK 107 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~---g~~~~~---~~~~~~~~~lg~~ 107 (530)
....+|+|||+|++||++|+.|++.|++|+|+|+.+.+||.+.. .|..+. ..-.+.+.++|++
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~ 203 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVE 203 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCE
Confidence 34578999999999999999999999999999999999997542 222221 1233455667765
No 296
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.70 E-value=0.00061 Score=70.26 Aligned_cols=34 Identities=38% Similarity=0.602 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|||||.+|+-+|..|++.|.+|+|+|+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4689999999999999999999999999999875
No 297
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.68 E-value=0.00053 Score=69.82 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=40.8
Q ss_pred HHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhh
Q 009646 254 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 313 (530)
Q Consensus 254 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~ 313 (530)
+.+.+++.|++++++++|++|..++ .+ .+..+++++.+|.||+|+|......++.+
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~~---~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~ 240 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGEE---RV-KVFTSGGVYQADMVILATGIKPNSELAKD 240 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecCC---CE-EEEcCCCEEEeCEEEECCCccCCHHHHHh
Confidence 3444567899999999999997653 33 23445778999999999998755545443
No 298
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.62 E-value=0.013 Score=61.17 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CC--eeEecCEEEEccChhhHH
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~--~~~~ad~VV~a~~~~~~~ 308 (530)
.++..+.+.+.++|++|+.+++|++|..++ +++++|.+ ++ .++.|+.||+|+|+|.-.
T Consensus 129 ~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~ 192 (516)
T TIGR03377 129 RLVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR 192 (516)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence 567778888889999999999999999876 66655554 23 279999999999999654
No 299
>PRK13984 putative oxidoreductase; Provisional
Probab=97.61 E-value=9.3e-05 Score=78.74 Aligned_cols=43 Identities=42% Similarity=0.557 Sum_probs=39.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
...++|+|||+|.+|+++|..|+++|++|+|+|+.+.+||.+.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4567899999999999999999999999999999999998744
No 300
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.61 E-value=0.0011 Score=68.19 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 46899999999999999999999999999998653
No 301
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.60 E-value=0.00095 Score=68.61 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=39.0
Q ss_pred HHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHH
Q 009646 254 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 309 (530)
Q Consensus 254 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ 309 (530)
+.+.+++.|++++++++|++|+.++ +.+.....+++++.+|.||+++|......
T Consensus 224 l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 224 LEEVFARRGMTVLKRSRAESVERTG--DGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred HHHHHHHCCcEEEcCCEEEEEEEeC--CEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 3344567899999999999998765 44432223466899999999999765443
No 302
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.60 E-value=0.00056 Score=74.70 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=40.3
Q ss_pred HHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhHHHhh
Q 009646 254 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI 311 (530)
Q Consensus 254 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll 311 (530)
+.+.++++|++|++++.|++|..++ .+..|.. +++++.+|.||+++|......+.
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~---~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la 243 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGAT---KADRIRFKDGSSLEADLIVMAAGIRPNDELA 243 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCC---ceEEEEECCCCEEEcCEEEECCCCCcCcHHH
Confidence 3445577899999999999997643 3344554 46689999999999976544443
No 303
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.59 E-value=6.6e-05 Score=81.66 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNGF 82 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~--G~~V~vlE~~~~~ 82 (530)
++|+|||||++||++|..|+++ |++|+|+|+++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 4899999999999999999998 8999999998753
No 304
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.58 E-value=0.0012 Score=68.16 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
..+|+|||+|..|+-+|..|++.|.+|+|+|++++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 46899999999999999999999999999998753
No 305
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.58 E-value=0.0013 Score=67.62 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
..+|+|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 468999999999999999999999999999987644
No 306
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.58 E-value=0.00059 Score=69.12 Aligned_cols=38 Identities=39% Similarity=0.624 Sum_probs=35.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG 84 (530)
..+|+|||+|..||.+|..|+++|++|+++|+.++++|
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~ 173 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch
Confidence 47899999999999999999999999999999987765
No 307
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.58 E-value=0.0011 Score=67.87 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|||+|..|+-.|..|++.|.+|+|+|+++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 4579999999999999999999999999999764
No 308
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.50 E-value=0.0016 Score=66.95 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---CCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSK---QGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~---~G~~V~vlE~~~~~ 82 (530)
..+|+|||||..|+-.|..++. .|.+|+|+|+++++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 4689999999999999976654 49999999988755
No 309
>PRK14727 putative mercuric reductase; Provisional
Probab=97.43 E-value=0.002 Score=66.48 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 367999999999999999999999999999874
No 310
>PRK07846 mycothione reductase; Reviewed
Probab=97.42 E-value=0.002 Score=65.96 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|++++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 46899999999999999999999999999998753
No 311
>PRK13748 putative mercuric reductase; Provisional
Probab=97.41 E-value=0.002 Score=68.20 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..+|+|||||..|+-.|..|++.|.+|+|++++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 468999999999999999999999999999975
No 312
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.37 E-value=7.6e-05 Score=64.41 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=44.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCCCCCcc-cccccc----cccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNGFGSPDD-ISFWYP----FRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~--G~~V~vlE~~~~~GG~~~-~g~~~~----~~~~~~~~~~lg~~ 107 (530)
..||+|||+|-+||+|||.++++ ..+|.|+|++-.+||-.. +|-.+. .....-+++++|+.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~Eigvp 143 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVP 143 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCC
Confidence 46999999999999999999976 579999999988876522 332211 12233456777776
No 313
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.36 E-value=0.0031 Score=64.50 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=34.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEcCCCCC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQ-GFDVTVLDDGNGF 82 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~-G~~V~vlE~~~~~ 82 (530)
....||.||||||-||...|.+|++. .++|+|||++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45679999999999999999999997 5899999997655
No 314
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.35 E-value=0.0026 Score=62.45 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=47.3
Q ss_pred EeecCCCcchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC--CeeEecCEEEEccChhh
Q 009646 240 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST 306 (530)
Q Consensus 240 ~~~~gg~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~--~~~~~ad~VV~a~~~~~ 306 (530)
.||.......+++.|...+++.|++|+++++|++| ++ +. ..+.+. ++.+.||.||+|+|...
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence 34544445678999999999999999999999999 32 32 345543 34799999999999743
No 315
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.34 E-value=0.0029 Score=65.57 Aligned_cols=33 Identities=39% Similarity=0.607 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..+|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 358999999999999999999999999999864
No 316
>PLN02546 glutathione reductase
Probab=97.29 E-value=0.004 Score=65.05 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 4689999999999999999999999999999864
No 317
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0017 Score=56.83 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHH
Q 009646 250 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 308 (530)
Q Consensus 250 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~ 308 (530)
|.+.+-+..++.|.+|..+ .|.+++... +...+.++.+.+.||.||+|+|+..-+
T Consensus 72 l~d~mrkqs~r~Gt~i~tE-tVskv~~ss---kpF~l~td~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 72 LMDKMRKQSERFGTEIITE-TVSKVDLSS---KPFKLWTDARPVTADAVILATGASAKR 126 (322)
T ss_pred HHHHHHHHHHhhcceeeee-ehhhccccC---CCeEEEecCCceeeeeEEEecccceee
Confidence 5555666667788899887 488888764 345566777789999999999987544
No 318
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.25 E-value=0.0027 Score=62.36 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=53.0
Q ss_pred chhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccChhhHHHhhh
Q 009646 248 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK 312 (530)
Q Consensus 248 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~~~~~~ll~ 312 (530)
..+.+.+.+.+++.|+++++++.+.+++... +|++..|... +.++.||.||+.+|...+..++.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~-~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNS-DGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCC-CCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 4466677888899999999999999999876 6888888776 56999999999999887665554
No 319
>PRK07846 mycothione reductase; Reviewed
Probab=97.22 E-value=0.00039 Score=71.02 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE-CCeeEecCEEEEccChhhHHHhh
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI 311 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll 311 (530)
.+.+.+.+ +.+.|++++++++|++|+.++ +.+. +.. +++++.+|.||+|+|......++
T Consensus 208 ~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 208 DISERFTE-LASKRWDVRLGRNVVGVSQDG--SGVT-LRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred HHHHHHHH-HHhcCeEEEeCCEEEEEEEcC--CEEE-EEECCCcEeecCEEEEEECCccCcccc
Confidence 34444443 345689999999999998765 4433 443 46689999999999977555443
No 320
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.22 E-value=0.00044 Score=69.55 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhh
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI 311 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll 311 (530)
.+.+.+.+.+++.|++++++++|++|.. + +.+.....+++++.||.||+++|......++
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~ 246 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQSGETLQADVVIYGIGISANDQLA 246 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECCCCEEECCEEEECCCCChhhHHH
Confidence 3445577777889999999999999976 3 3333223346689999999999987555444
No 321
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.18 E-value=0.0053 Score=62.83 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+++|||||..|+-.|..|++.|.+|+|+|+.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 4689999999999999999999999999999864
No 322
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.17 E-value=0.0062 Score=62.72 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 368999999999999999999999999999987543
No 323
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.06 E-value=0.0092 Score=63.38 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 457999999999999999999999999999987644
No 324
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.06 E-value=0.00072 Score=69.16 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHh
Q 009646 249 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 249 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~l 310 (530)
.+.+.+.+ +.+.|++++++++|++++.++ +.+.....+++++.+|.||+|+|......+
T Consensus 211 ~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~--~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 211 DISDRFTE-IAKKKWDIRLGRNVTAVEQDG--DGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred HHHHHHHH-HHhcCCEEEeCCEEEEEEEcC--CeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 34444444 334689999999999998765 433322234568999999999997655444
No 325
>PRK10262 thioredoxin reductase; Provisional
Probab=97.04 E-value=0.0054 Score=59.80 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|||+|..|+-.|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4689999999999999999999999999998753
No 326
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.99 E-value=0.0084 Score=61.71 Aligned_cols=36 Identities=36% Similarity=0.637 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
..+|+|||+|..|+-.|..|++.|.+|+|+|+++++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 468999999999999999999999999999987533
No 327
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.85 E-value=0.011 Score=61.66 Aligned_cols=33 Identities=36% Similarity=0.436 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..+|+|||||..|+-+|..|++.|.+|+|+|+.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~ 384 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA 384 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence 468999999999999999999999999999864
No 328
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00074 Score=63.08 Aligned_cols=40 Identities=30% Similarity=0.509 Sum_probs=36.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
....|||.|||||++|.+||.+.+++|.+.-|+ ..++||.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQ 247 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQ 247 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCe
Confidence 456799999999999999999999999998888 4689998
No 329
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.75 E-value=0.031 Score=54.68 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=27.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDGN 80 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~--~V~vlE~~~ 80 (530)
...++|+|||||.++.-++..|.+++. +|+++=|+.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 456789999999999999999999874 899997764
No 330
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.70 E-value=0.0043 Score=59.69 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=33.6
Q ss_pred CCCCCCCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEcCCC
Q 009646 41 NNNGKNKKKIVVVGSGWAGLGAAHHLSKQ----GFDVTVLDDGN 80 (530)
Q Consensus 41 ~~~~~~~~dVvIIGaG~aGL~aA~~La~~----G~~V~vlE~~~ 80 (530)
.+.....+||+|||||+.|++-|..|... .++|+|+|.++
T Consensus 30 ~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 30 KSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred ccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 34455689999999999999999999865 46999999883
No 331
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0018 Score=60.19 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..|.|||||++|.-|||+|+++|..|.|+|=.+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 569999999999999999999999999999654
No 332
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.48 E-value=0.061 Score=56.72 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=48.3
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
+..+...|.+.+.+.|++|+.++.++++..++ +|+|+++.. +++ .+.|+.||+|+|...
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 45688889888888899999999999999864 488888765 233 678999999999865
No 333
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.22 E-value=0.081 Score=51.29 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=34.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCCC
Q 009646 44 GKNKKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDGNGF 82 (530)
Q Consensus 44 ~~~~~dVvIIGaG~aGL~aA~~La~~G-~~V~vlE~~~~~ 82 (530)
++..+|+|.||-|++-|+-|..|.+.+ .+++.|||.+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 456799999999999999999999975 789999998654
No 334
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.16 E-value=0.0075 Score=51.77 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
+|+|||||..|.+.|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999864
No 335
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.04 E-value=0.0072 Score=53.33 Aligned_cols=33 Identities=36% Similarity=0.553 Sum_probs=26.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
|+|.|||.|..||..|..|+++|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 579999999999999999999999999999874
No 336
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.90 E-value=0.013 Score=51.62 Aligned_cols=32 Identities=34% Similarity=0.672 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999864
No 337
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.01 Score=58.17 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=31.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
...|||||||||-||.-||...++.|.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 35699999999999999999999999998888754
No 338
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.65 E-value=0.018 Score=55.84 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=31.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
+.+++|+|||+|..|..-|..|+++|++|+++.++
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 34568999999999999999999999999999875
No 339
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.60 E-value=0.017 Score=59.87 Aligned_cols=35 Identities=43% Similarity=0.643 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
..+|+|||+|.+|+.+|..|+++|++|+++|+.+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 35799999999999999999999999999997653
No 340
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.59 E-value=0.019 Score=58.67 Aligned_cols=58 Identities=28% Similarity=0.321 Sum_probs=43.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
..+|+|||||..|+..|..|++.|.+|+|+|+++++.++.+..+ ...+.+.+++.|+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~---~~~~~~~l~~~GI~ 214 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSV---AALAKQYMEEDGIT 214 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHH---HHHHHHHHHHcCCE
Confidence 45799999999999999999999999999999988755432110 01133455666766
No 341
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.54 E-value=0.018 Score=54.78 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999875
No 342
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.48 E-value=0.16 Score=49.56 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=60.8
Q ss_pred CCCHHHHHHhhhhhhhhhcCCCchhchHHHHHHH---HHHHHHhhcCcceeEeec------CCCcchhHHHHHHHHHhcC
Q 009646 192 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI---LYFIILAHQKNFDLVWCR------GTLREKIFEPWMDSMRTRG 262 (530)
Q Consensus 192 g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~---l~~~~~~~~~~~~~~~~~------gg~~~~l~~~l~~~l~~~G 262 (530)
+++++-+++++. ++..+.+.++-|.++...-.. +..+...-.....+.... ..+..++.+...+.+.+.|
T Consensus 209 ~l~~eerkRlLh-~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~ 287 (491)
T KOG2495|consen 209 GLSDEERKRLLH-FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDG 287 (491)
T ss_pred CCChHHhhheEE-EEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhcc
Confidence 455555555543 344555666667766432111 111111111122233222 1123455665666677889
Q ss_pred CEEEcCceeeEEEecCCCCeEEEEEECC---eeEecCEEEEccChh
Q 009646 263 CEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGIS 305 (530)
Q Consensus 263 ~~i~~~~~V~~I~~~~~~g~v~~v~~~~---~~~~ad~VV~a~~~~ 305 (530)
+++++++.|.++..+. +.+.+.+ +++.+-.+|+++|..
T Consensus 288 I~~~~~t~Vk~V~~~~-----I~~~~~~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 288 IDLDTGTMVKKVTEKT-----IHAKTKDGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred ceeecccEEEeecCcE-----EEEEcCCCceeeecceEEEecCCCC
Confidence 9999999999997543 3344433 378899999999865
No 343
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.41 E-value=0.026 Score=54.39 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|.|||+|..|..-|..++.+|++|+++|.++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999865
No 344
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.38 E-value=0.02 Score=58.95 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
+|.|||.|.+|+++|..|.++|++|++.|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987644
No 345
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.37 E-value=0.011 Score=53.35 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=39.2
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~--G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
+.+|||||+||.+||-.|++. ..+|+|+-+++.+- .+.+|..+.+++++++++
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vk------svtn~~~i~~ylekfdv~ 55 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK------SVTNYQKIGQYLEKFDVK 55 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHH------HHhhHHHHHHHHHhcCcc
Confidence 368999999999999999986 46899998876442 123455566666777665
No 346
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.36 E-value=0.021 Score=55.22 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
++|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999874
No 347
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.24 E-value=0.031 Score=47.60 Aligned_cols=31 Identities=32% Similarity=0.525 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 50 IVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 50 VvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
|+|||+|..|...|++|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998763
No 348
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.20 E-value=0.029 Score=56.72 Aligned_cols=42 Identities=31% Similarity=0.501 Sum_probs=37.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCc
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 86 (530)
..+.+++|||||..|+=-|..+++.|.+|||+|+++++--.+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~ 212 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE 212 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC
Confidence 345679999999999999999999999999999999886543
No 349
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.16 E-value=0.027 Score=57.97 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=42.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
..+|+|||||.+|+-+|..|++.|.+|+|+|+++++...++... ...+.+.+++.|++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~---~~~~~~~l~~~gi~ 227 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEV---SKVVAKALKKKGVK 227 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHH---HHHHHHHHHHcCCE
Confidence 46899999999999999999999999999999987754322100 11233455566665
No 350
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.02 E-value=0.077 Score=55.32 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=42.0
Q ss_pred HHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC-CeeEecCEEEEccChhhHHHh
Q 009646 254 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL 310 (530)
Q Consensus 254 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~-~~~~~ad~VV~a~~~~~~~~l 310 (530)
|...+++.|.+++++...+.|..+ +++..++.. |..+.||.||+|+|......+
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~~i~ad~VV~a~GIrPn~el 247 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGTEIPADLVVMAVGIRPNDEL 247 (793)
T ss_pred HHHHHHhhcceeecccchhhhhcC---cceeeEeecCCCcccceeEEEecccccccHh
Confidence 455557889999999999999874 567778876 558999999999997644433
No 351
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.00 E-value=0.032 Score=57.41 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=42.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
..+|+|||+|..|+-+|..|++.|.+|+|+|+++++....+... ...+.+.+++.|++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~---~~~l~~~l~~~gV~ 223 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEI---SAAVEEALAEEGIE 223 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHH---HHHHHHHHHHcCCE
Confidence 36899999999999999999999999999999887654332100 01233455555665
No 352
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.94 E-value=0.041 Score=56.33 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+++++...++... ...+.+.+++.|++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~---~~~~~~~l~~~gI~ 223 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMI---SETITEEYEKEGIN 223 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHH---HHHHHHHHHHcCCE
Confidence 46899999999999999999999999999999987654332111 11234455666766
No 353
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.93 E-value=0.034 Score=50.04 Aligned_cols=35 Identities=34% Similarity=0.492 Sum_probs=29.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
...+|+|||+|.++.-+|..|++.|.+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45789999999999999999999999999998765
No 354
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.92 E-value=0.033 Score=50.89 Aligned_cols=34 Identities=32% Similarity=0.653 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
++++|||+|-.|.+.|..|.+.|++|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999998753
No 355
>PRK06370 mercuric reductase; Validated
Probab=94.90 E-value=0.04 Score=56.70 Aligned_cols=58 Identities=24% Similarity=0.479 Sum_probs=42.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+++++....+... ...+.+.+++.|++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~---~~~l~~~l~~~GV~ 228 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDV---AAAVREILEREGID 228 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHH---HHHHHHHHHhCCCE
Confidence 46899999999999999999999999999999988765432100 01233445556665
No 356
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.83 E-value=0.04 Score=56.78 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=35.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++...
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 210 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG 210 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence 368999999999999999999999999999998877543
No 357
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.82 E-value=0.034 Score=53.70 Aligned_cols=33 Identities=33% Similarity=0.592 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
|+|.|||+|..||++|..|++.|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999999999999754
No 358
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.81 E-value=0.049 Score=47.33 Aligned_cols=34 Identities=38% Similarity=0.518 Sum_probs=29.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
.+.+|+|+|+|.+|..||..|...|++|+++|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 4578999999999999999999999999999975
No 359
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.77 E-value=0.048 Score=56.16 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=35.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+++++...
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 213 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 468999999999999999999999999999999887654
No 360
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.75 E-value=0.042 Score=56.10 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=43.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+++++...++... ...+.+.+++.|++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~---~~~l~~~l~~~gI~ 205 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADM---NQPILDELDKREIP 205 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHH---HHHHHHHHHhcCCE
Confidence 35799999999999999999999999999999887764433110 11244555666665
No 361
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.71 E-value=0.045 Score=52.31 Aligned_cols=33 Identities=36% Similarity=0.564 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999764
No 362
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.68 E-value=0.051 Score=55.78 Aligned_cols=34 Identities=41% Similarity=0.624 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.++|+|||+|-.|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999864
No 363
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.68 E-value=0.046 Score=56.36 Aligned_cols=58 Identities=29% Similarity=0.382 Sum_probs=42.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+++....+... ...+.+.+++.|++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~---~~~l~~~l~~~gV~ 229 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEV---SKEIAKQYKKLGVK 229 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHH---HHHHHHHHHHCCCE
Confidence 46899999999999999999999999999999887654322000 11234555666766
No 364
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.65 E-value=0.047 Score=52.35 Aligned_cols=34 Identities=38% Similarity=0.528 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 365
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.63 E-value=0.046 Score=52.66 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
.++|+|||+|..|...|.+|++.|.+|+++.++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 367999999999999999999999999999985
No 366
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.38 E-value=0.049 Score=52.12 Aligned_cols=33 Identities=39% Similarity=0.602 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 369999999999999999999999999999864
No 367
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.38 E-value=0.082 Score=47.48 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|+|||||-.|...+..|.+.|.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 589999999999999999999999999997643
No 368
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.30 E-value=0.091 Score=43.74 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFD-VTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~-V~vlE~~ 79 (530)
...+|+|||+|-+|-.+++.|.+.|.+ |+|+.|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 346899999999999999999999986 9999875
No 369
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.25 E-value=0.081 Score=45.71 Aligned_cols=35 Identities=34% Similarity=0.295 Sum_probs=31.0
Q ss_pred CCCCcEEEECCCH-HHHHHHHHHHHCCCeEEEEcCC
Q 009646 45 KNKKKIVVVGSGW-AGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 45 ~~~~dVvIIGaG~-aGL~aA~~La~~G~~V~vlE~~ 79 (530)
-..++|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3557899999995 7999999999999999999975
No 370
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.24 E-value=0.06 Score=51.98 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
++|+|||+|..|...|..|+++|++|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999984
No 371
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.22 E-value=0.057 Score=53.11 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
++|.|||+|..|...|..|+++|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57999999999999999999999999999974
No 372
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.09 E-value=0.047 Score=43.00 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
...+|+|||||-.|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3468999999999999999999999999999875
No 373
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.07 E-value=0.066 Score=53.98 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
++|.|||.|..|+..|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6799999999999999999999999999997653
No 374
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.01 E-value=0.069 Score=51.59 Aligned_cols=31 Identities=39% Similarity=0.424 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDD 78 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~ 78 (530)
++|+|||+|..|...|..|+++|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999987
No 375
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.96 E-value=0.23 Score=52.38 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=48.1
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEE----CCe--eEecCEEEEccChhh
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 306 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~----~~~--~~~ad~VV~a~~~~~ 306 (530)
+..+...|.+.+.+.|++|+.++.|+++..++ |+++++.. +++ .+.|+.||+|+|...
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 45688889998888999999999999999865 88888764 233 689999999999864
No 376
>PRK04148 hypothetical protein; Provisional
Probab=93.92 E-value=0.069 Score=43.78 Aligned_cols=33 Identities=42% Similarity=0.579 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
.++++||.| .|...|..|++.|++|+.+|-++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999998753
No 377
>PTZ00058 glutathione reductase; Provisional
Probab=93.89 E-value=0.088 Score=55.15 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=35.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~ 85 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+++++...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~ 275 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK 275 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc
Confidence 568999999999999999999999999999998876543
No 378
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.87 E-value=0.079 Score=50.49 Aligned_cols=33 Identities=36% Similarity=0.580 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999764
No 379
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.86 E-value=0.11 Score=46.56 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..+|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 468999999999999999999999999999754
No 380
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.82 E-value=0.089 Score=50.74 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G--~~V~vlE~~~ 80 (530)
++|.|||+|..|.++|+.|+.+| .+|.++|++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 47999999999999999999999 5899999864
No 381
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.76 E-value=0.12 Score=44.11 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=29.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLD 77 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE 77 (530)
...+|+|||||-.|..-|..|.+.|++|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 34679999999999999999999999999995
No 382
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.71 E-value=0.096 Score=53.64 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G 83 (530)
..+|+|||||..|+-+|..|++.|.+|+++++.+++.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 185 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL 185 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 3689999999999999999999999999999887654
No 383
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.71 E-value=0.087 Score=58.03 Aligned_cols=37 Identities=32% Similarity=0.397 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G 83 (530)
..+++|||||..|+-+|..|++.|.+|+|+|..+++-
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 3579999999999999999999999999999988754
No 384
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.69 E-value=0.082 Score=50.63 Aligned_cols=33 Identities=45% Similarity=0.703 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 385
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.69 E-value=0.097 Score=50.25 Aligned_cols=33 Identities=42% Similarity=0.589 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 386
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.60 E-value=0.1 Score=53.95 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
.-.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345799999999999999999999999999998754
No 387
>PRK06116 glutathione reductase; Validated
Probab=93.55 E-value=0.11 Score=53.40 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G 83 (530)
..+|+|||+|..|+-.|..|++.|.+|+++++++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 203 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL 203 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence 4689999999999999999999999999999987654
No 388
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.54 E-value=0.11 Score=50.35 Aligned_cols=33 Identities=24% Similarity=0.561 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999754
No 389
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.53 E-value=0.096 Score=53.59 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3689999999999999999999999999999864
No 390
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.46 E-value=0.13 Score=45.90 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
...+|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34689999999999999999999998 69999975
No 391
>PLN02507 glutathione reductase
Probab=93.39 E-value=0.11 Score=53.85 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G 83 (530)
..+|+|||||..|+-.|..|++.|.+|+|+++.+++-
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 4689999999999999999999999999999987653
No 392
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.37 E-value=0.11 Score=50.85 Aligned_cols=33 Identities=39% Similarity=0.580 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G-~~V~vlE~~ 79 (530)
+++|+|||+|-.|-++|+.|+++| .+|+|.+|+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 368999999999999999999998 899999997
No 393
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.37 E-value=0.13 Score=50.17 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
.++|.|||+|..|...|..|+++|++|++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 357999999999999999999999999999985
No 394
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.34 E-value=0.07 Score=49.64 Aligned_cols=34 Identities=41% Similarity=0.475 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
.+-+|+|||||+.|..+|..+..-|.+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 4568999999999999999999999999999987
No 395
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.32 E-value=0.13 Score=52.68 Aligned_cols=58 Identities=22% Similarity=0.421 Sum_probs=42.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
..+|+|||+|..|+-.|..|++.|.+|+|+|+++++....+..+ ...+.+.+++.|++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~---~~~l~~~l~~~gV~ 215 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDI---ADNIATILRDQGVD 215 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHH---HHHHHHHHHhCCCE
Confidence 35899999999999999999999999999999887654322111 11234455666765
No 396
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.09 E-value=0.12 Score=54.38 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
..+|+|||||..|+-.|..|++.|.+|+++++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 468999999999999999999999999999998754
No 397
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.09 E-value=0.15 Score=49.06 Aligned_cols=33 Identities=36% Similarity=0.631 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~~ 80 (530)
++|.|||+|..|...|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999999999999999886 899999743
No 398
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.03 E-value=0.13 Score=53.75 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
..+|+|||||.+|+-+|..|++.+.+|+|+++.+.+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 468999999999999999999999999999987543
No 399
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.92 E-value=0.16 Score=50.38 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
...+|+|||+|..|+.+|..|...|.+|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 3467999999999999999999999999999975
No 400
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.92 E-value=0.11 Score=52.47 Aligned_cols=33 Identities=39% Similarity=0.557 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
+|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998653
No 401
>PRK12831 putative oxidoreductase; Provisional
Probab=92.91 E-value=0.15 Score=52.44 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
...+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34689999999999999999999999999998764
No 402
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.87 E-value=0.15 Score=49.65 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
++|.|||+|..|...|..|++.|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999863
No 403
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.76 E-value=0.13 Score=45.48 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.....|.|||||..|.-.|...+..|+.|.|++++.
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 455789999999999999999999999999999874
No 404
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.73 E-value=0.19 Score=43.43 Aligned_cols=34 Identities=38% Similarity=0.543 Sum_probs=29.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
+++|.|||-|..|...|..|.++|++|.+++++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 3689999999999999999999999999999763
No 405
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.69 E-value=0.15 Score=52.14 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G--~~V~vlE~~~ 80 (530)
++|+|||.|..|+..|..|+++| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 57999999999999999999985 7899999754
No 406
>PRK14694 putative mercuric reductase; Provisional
Probab=92.67 E-value=0.18 Score=51.94 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=40.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
..+|+|||+|..|+-.|..|++.|.+|+|+++...+. ..+... ...+.+.+++.|++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-~~~~~~---~~~l~~~l~~~GI~ 234 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-QEDPAV---GEAIEAAFRREGIE 234 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-CCCHHH---HHHHHHHHHhCCCE
Confidence 4689999999999999999999999999999753332 211000 12244556666765
No 407
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.65 E-value=0.16 Score=49.50 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
+|.|||+|..|.+-|..|+++|++|+++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 6999999999999999999999999999875
No 408
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.62 E-value=0.21 Score=48.32 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.++|.|||+|..|.+.|..|+++|++|++++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4679999999999999999999999999999864
No 409
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.59 E-value=0.25 Score=41.44 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=29.6
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCC
Q 009646 48 KKIVVVGS-GWAGLGAAHHLSKQGF--DVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGa-G~aGL~aA~~La~~G~--~V~vlE~~~ 80 (530)
++|+|||+ |..|-+.|+.|...+. ++.|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999874 799999863
No 410
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.57 E-value=0.16 Score=50.94 Aligned_cols=36 Identities=47% Similarity=0.578 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
.++|+|+|-|.+|+++|..|.+.|++|++.|..+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 678999999999999999999999999999976544
No 411
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.54 E-value=0.29 Score=43.85 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..+.|+|+|.|-.|..+|..|.+.|++|++.|.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3467999999999999999999999999999875
No 412
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.43 E-value=0.2 Score=51.33 Aligned_cols=34 Identities=41% Similarity=0.506 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
...|+|+|+|-+|+++|..|+++|++|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 413
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.42 E-value=0.21 Score=49.27 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCe-EEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFD-VTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~-V~vlE~~~ 80 (530)
.+|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5799999999999999999999987 99998754
No 414
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.37 E-value=0.19 Score=48.17 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 4589999999999999999999999999999864
No 415
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.35 E-value=0.22 Score=41.45 Aligned_cols=33 Identities=30% Similarity=0.708 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
+.+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 3589999999999999999999998 79999964
No 416
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.15 E-value=0.24 Score=47.02 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~~ 80 (530)
..+|+|||+|-+|-++|+.|++.|. +|+|++++.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3689999999999999999999997 799999863
No 417
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.14 E-value=0.15 Score=47.72 Aligned_cols=37 Identities=27% Similarity=0.571 Sum_probs=30.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CC-eEEEEcCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQ-GF-DVTVLDDGNG 81 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~-G~-~V~vlE~~~~ 81 (530)
...++|+|||||.+|++.|..+.++ |. +|.|+|-.+.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 3568999999999999999999886 54 8999996543
No 418
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=92.13 E-value=0.22 Score=51.52 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
.+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 57999999999999999999999999999974
No 419
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.11 E-value=0.26 Score=50.45 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
.++|+|+|.|-+|+++|..|+++|++|++.|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35799999999999999999999999999997653
No 420
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.88 E-value=0.21 Score=51.62 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998743
No 421
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.85 E-value=0.24 Score=50.90 Aligned_cols=33 Identities=36% Similarity=0.494 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 579999999999999999999999999999764
No 422
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.80 E-value=0.23 Score=51.02 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|+|.|.+|.++|..|.++|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 3579999999999999999999999999999654
No 423
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.75 E-value=0.23 Score=50.92 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
...+|+|||+|.+||.|+..+...|.+|.++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999764
No 424
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.74 E-value=0.28 Score=47.35 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~~ 80 (530)
++|+|||+|..|.+.|+.|+..|. +|.++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 689999999999999999999876 999999854
No 425
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.73 E-value=0.33 Score=47.00 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGNG 81 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~~~ 81 (530)
.+|+|||+|..|.+.|+.|+..|+ +|.|+|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 689999999999999999999996 9999998654
No 426
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=91.65 E-value=0.5 Score=35.67 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=29.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEcC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQ-GFDVTVLDD 78 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~-G~~V~vlE~ 78 (530)
...+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 346799999999999999999998 678999988
No 427
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.62 E-value=0.32 Score=45.44 Aligned_cols=34 Identities=35% Similarity=0.437 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G-~~V~vlE~~ 79 (530)
...+|+|||+|-.|..+|..|++.| -+++|+|..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3468999999999999999999999 489999964
No 428
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.61 E-value=0.27 Score=49.94 Aligned_cols=57 Identities=28% Similarity=0.337 Sum_probs=40.2
Q ss_pred CcEEEECCCHHHHHHHHHHHH--------------CCCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSK--------------QGFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIK 107 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~--------------~G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~ 107 (530)
.+|+|||||.+|+-.|..|++ .+.+|+|+|+++++...++... ...+.+.+++.|++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~---~~~~~~~L~~~gV~ 244 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQAL---RKYGQRRLRRLGVD 244 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHH---HHHHHHHHHHCCCE
Confidence 379999999999999999986 4789999999877643322100 12244556677766
No 429
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.60 E-value=0.24 Score=47.05 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
+|.|||.|..|.+.|..|.++|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999753
No 430
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.57 E-value=0.2 Score=48.09 Aligned_cols=34 Identities=35% Similarity=0.482 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 81 (530)
++|.|+|+|..|...|++|+++|.+|+++=|.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4799999999999999999999988999987653
No 431
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.54 E-value=0.26 Score=51.01 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
++|.|||+|..|..-|..|+++|++|+|+|+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999753
No 432
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.54 E-value=0.29 Score=44.75 Aligned_cols=34 Identities=35% Similarity=0.539 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC---eEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF---DVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~---~V~vlE~~~ 80 (530)
..+|+|+|+|-+|..+|..|.+.|. +|.|+++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 3679999999999999999999997 599999874
No 433
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.53 E-value=0.24 Score=49.36 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
+|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999988885 99999999865
No 434
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.20 E-value=0.32 Score=44.35 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=28.9
Q ss_pred CcEEEEC-CCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 48 KKIVVVG-SGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 48 ~dVvIIG-aG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
++|.||| +|..|.+.|..|+++|++|+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3699997 7999999999999999999999765
No 435
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=91.20 E-value=0.12 Score=49.55 Aligned_cols=42 Identities=33% Similarity=0.485 Sum_probs=38.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCcc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD 87 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 87 (530)
-+.+.+|||||..||--+..-.+.|.+||++|..+.+||.+|
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD 251 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD 251 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC
Confidence 456899999999999999999999999999999999998866
No 436
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.16 E-value=0.26 Score=53.26 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.-.+|.|||||..|...|..++.+|++|+++|.++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 44679999999999999999999999999999874
No 437
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.13 E-value=0.27 Score=53.35 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|.|||+|..|...|..++.+|++|+++|.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999874
No 438
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.11 E-value=0.32 Score=50.31 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
.+|+|+|.|.+|++++..|.+.|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999999964
No 439
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.02 E-value=0.35 Score=48.22 Aligned_cols=35 Identities=37% Similarity=0.389 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
....|+|+|+|..|+.+|..|...|.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 34689999999999999999999999999999764
No 440
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.97 E-value=0.43 Score=46.08 Aligned_cols=35 Identities=31% Similarity=0.533 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~--~V~vlE~~~ 80 (530)
...+|+|||+|-.|-++|+.|+..|. ++.|+|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34699999999999999999999987 899999753
No 441
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.95 E-value=0.44 Score=38.25 Aligned_cols=31 Identities=35% Similarity=0.626 Sum_probs=27.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 50 IVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 50 VvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
|+|+|.|-.|...+..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7899999999999999999777999999874
No 442
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.95 E-value=0.41 Score=46.14 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~--~V~vlE~~~ 80 (530)
..+|.|||+|..|.++|+.|+..|. ++.|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999999875 799999754
No 443
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=90.91 E-value=0.34 Score=49.78 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~~ 80 (530)
..+|+|||||..|+-+|..|.+.|. +|+++++.+
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999998 899999764
No 444
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.88 E-value=0.38 Score=46.89 Aligned_cols=33 Identities=30% Similarity=0.584 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4679999999999999999999998 89999975
No 445
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=0.2 Score=47.35 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+||+|||||-+|.-||.-|+--=..|+|||=.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 5799999999999999999985545899999543
No 446
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.87 E-value=0.36 Score=46.55 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGN 80 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G--~~V~vlE~~~ 80 (530)
+|+|||+|-.|.+.|+.|+.+| .+|.|+|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999999 5899999864
No 447
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.86 E-value=0.39 Score=45.94 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|||.|..|..+|..|...|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999874
No 448
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.77 E-value=0.4 Score=46.80 Aligned_cols=33 Identities=30% Similarity=0.613 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4689999999999999999999998 89999974
No 449
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.73 E-value=0.69 Score=34.27 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=31.9
Q ss_pred cchhHHHHHHHHHhcCCEEEcCceeeEEEecCCCCeEEEEEEC
Q 009646 247 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG 289 (530)
Q Consensus 247 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~ 289 (530)
...+...+.+.+++.|+++++++.|++|..++ ++ +. |...
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-~~-V~~~ 78 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG-DG-VE-VTLE 78 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TS-EE-EEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CE-EE-EEEe
Confidence 44566778888899999999999999999987 45 54 5554
No 450
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.71 E-value=0.21 Score=49.51 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=42.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-------------CCeEEEEcCCCCCCCCcccccccccccHHHHHHHhCCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQ-------------GFDVTVLDDGNGFGSPDDISFWYPFRNIFSLVDELGIKP 108 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~-------------G~~V~vlE~~~~~GG~~~~g~~~~~~~~~~~~~~lg~~~ 108 (530)
.-+++|||||++|.-.|-.|++. ..+|+|+|+.+++--.++... .....+.++++|++.
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l---~~~a~~~L~~~GV~v 226 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKL---SKYAERALEKLGVEV 226 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHH---HHHHHHHHHHCCCEE
Confidence 35799999999999999999763 139999999998753322000 112456788889883
No 451
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.59 E-value=0.34 Score=46.05 Aligned_cols=33 Identities=36% Similarity=0.580 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..+|.|||||..|-..|..++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 357999999999999999999988999999987
No 452
>PLN02712 arogenate dehydrogenase
Probab=90.52 E-value=0.79 Score=49.13 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=32.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+++|.|||.|..|-+.|..|.+.|++|+++++++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 85 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD 85 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 445789999999999999999999999999998753
No 453
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.31 E-value=0.45 Score=49.04 Aligned_cols=33 Identities=42% Similarity=0.658 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
.++|.|+|.|.+|+++|..|.++|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 457999999999999999999999999999964
No 454
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.29 E-value=0.47 Score=45.28 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe-EEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFD-VTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~-V~vlE~~~ 80 (530)
.+.|+|+|||-+|.++|+.|++.|.+ |+|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 35799999999999999999999986 99998863
No 455
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.17 E-value=0.37 Score=52.29 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.-.+|.|||+|..|...|..++.+|++|+++|.++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 34579999999999999999999999999999875
No 456
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.16 E-value=0.55 Score=42.15 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
...+|+|||.|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 34689999999999999999999997 89999974
No 457
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.16 E-value=0.53 Score=42.54 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34689999999999999999999997 59999974
No 458
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.13 E-value=0.36 Score=53.02 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe-EEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFD-VTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~-V~vlE~~~ 80 (530)
..+|+|||||..|+-+|..|.+.|.+ |+|+++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999999987 99999764
No 459
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.11 E-value=0.52 Score=43.53 Aligned_cols=33 Identities=30% Similarity=0.522 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4689999999999999999999996 89999964
No 460
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.05 E-value=0.5 Score=41.21 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
+|+|||+|..|...|..|++.|. +++|+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999998 59999974
No 461
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.01 E-value=0.5 Score=44.95 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|||.|-.|...|..|...|.+|++++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 462
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.99 E-value=0.55 Score=42.46 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=29.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEc
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLD 77 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE 77 (530)
....|+|||||-.++.=+..|.+.|.+|+|+-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45689999999999999999999999999994
No 463
>PLN00016 RNA-binding protein; Provisional
Probab=89.97 E-value=0.4 Score=47.90 Aligned_cols=36 Identities=36% Similarity=0.642 Sum_probs=31.8
Q ss_pred CCCCcEEEE----CC-CHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 45 KNKKKIVVV----GS-GWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 45 ~~~~dVvII----Ga-G~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+++|+|+ || |..|...+..|.++|++|+++.++.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 445789999 76 9999999999999999999999864
No 464
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.96 E-value=0.59 Score=41.66 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=29.8
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGS-GWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGa-G~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..+++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999997 999999999999999999999765
No 465
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=89.87 E-value=0.46 Score=48.39 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=33.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009646 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (530)
Q Consensus 45 ~~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 82 (530)
-..++|+|||+|.+|.-.|-.|++.|.+|+++=|++..
T Consensus 173 ~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 173 LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 34578999999999999999999999999999887643
No 466
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.83 E-value=0.44 Score=49.00 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHH-HHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLG-AAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~-aA~~La~~G~~V~vlE~~~ 80 (530)
++|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 57999999999999 5999999999999999764
No 467
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=89.74 E-value=0.56 Score=45.58 Aligned_cols=72 Identities=18% Similarity=0.093 Sum_probs=53.9
Q ss_pred CCCcchhHHHHHH----HHHhcCCEEEcCceeeEEEecCCCCeEEEEEECCeeEecCEEEEccChhhHHHhhhhcccc
Q 009646 244 GTLREKIFEPWMD----SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILC 317 (530)
Q Consensus 244 gg~~~~l~~~l~~----~l~~~G~~i~~~~~V~~I~~~~~~g~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~ 317 (530)
+++..-|.+.|.+ .+++.|+.|+-|+.|.++.... +.++.-..+|.+++.|.||+|+|-....+|.....+.
T Consensus 385 ~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe 460 (659)
T KOG1346|consen 385 YNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLE 460 (659)
T ss_pred CChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc--cceEEEecCCCeeeeeeEEEEecCCCchhhcccccce
Confidence 6666666666654 4677799999999999998876 5454444557799999999999988777777665443
No 468
>PRK07060 short chain dehydrogenase; Provisional
Probab=89.69 E-value=0.69 Score=42.80 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.3
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 46 NKKKIVVVGS-GWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGa-G~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..+.++|.|| |..|...|..|+++|++|+++.++
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~ 42 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARN 42 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3467999998 799999999999999999999875
No 469
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.68 E-value=0.64 Score=39.06 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999998 79999964
No 470
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.57 E-value=0.55 Score=48.86 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|||.|.+|+++|..|.++|++|++.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 579999999999999999999999999999753
No 471
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.53 E-value=0.5 Score=48.42 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|+|+|..|+.++..+...|.+|+++|.++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999764
No 472
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.51 E-value=0.46 Score=48.69 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..++|+|||+|.+|+=.|..|++.+.+|+++.++.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 45789999999999999999999999999998764
No 473
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.51 E-value=0.58 Score=44.22 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
..+++|+|+|-+|.++|+.|++.|.+|+|++++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457999999999999999999999999999875
No 474
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.51 E-value=0.5 Score=48.36 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=28.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
.+|+|+|.|.+|.++|..|.+ |.+|+|.|..
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 579999999999999999994 9999999954
No 475
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.42 E-value=0.49 Score=51.19 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLS-KQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La-~~G~~V~vlE~~~ 80 (530)
...+|.|||+|..|...|..++ ++|++|+++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3357999999999999999998 5899999999874
No 476
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.31 E-value=0.65 Score=43.05 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
...+|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 34689999999999999999999997 89999964
No 477
>PRK08328 hypothetical protein; Provisional
Probab=89.22 E-value=0.67 Score=42.57 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4689999999999999999999997 79999864
No 478
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=89.13 E-value=1.2 Score=44.69 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=32.0
Q ss_pred CCCCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 44 GKNKKKIVVVGS-GWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 44 ~~~~~dVvIIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
+...+.|+|+|| |..|...+..|.++|++|+++.++.
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 345567999998 9999999999999999999998754
No 479
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=89.09 E-value=0.75 Score=45.77 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=32.8
Q ss_pred CCCCCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 43 NGKNKKKIVVVGS-GWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 43 ~~~~~~dVvIIGa-G~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
+...+++|+|.|| |..|...+..|.++|++|+.+.+.
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 3446678999999 999999999999999999999874
No 480
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.07 E-value=0.61 Score=39.66 Aligned_cols=35 Identities=37% Similarity=0.469 Sum_probs=28.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+.++|+|=|-.|-.+|..|+..|.+|+|.|..+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 34679999999999999999999999999999864
No 481
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=88.97 E-value=0.58 Score=44.91 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|||.|..|...|..|+++|++|+++++++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999999863
No 482
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.93 E-value=0.52 Score=45.30 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Q 009646 50 IVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGN 80 (530)
Q Consensus 50 VvIIGaG~aGL~aA~~La~~G~-~V~vlE~~~ 80 (530)
|.|||+|..|...|+.|+.+|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999886 999999864
No 483
>PLN02602 lactate dehydrogenase
Probab=88.89 E-value=0.86 Score=44.58 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~--~V~vlE~~~ 80 (530)
++|+|||+|-.|.++|+.|...|. ++.|+|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999998885 799999754
No 484
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=88.87 E-value=0.5 Score=45.23 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999998863
No 485
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.81 E-value=0.58 Score=47.42 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
.+|.|||-|.+|+++|..|.++|++|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999653
No 486
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.69 E-value=0.51 Score=48.45 Aligned_cols=33 Identities=42% Similarity=0.627 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
++|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 479999999999999999999999999999864
No 487
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.63 E-value=0.72 Score=45.83 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=31.5
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 46 NKKKIVVVG-SGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIG-aG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
...+|+||| .|..|-+.|..|.++|++|+++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 446899999 89999999999999999999999753
No 488
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.63 E-value=0.75 Score=44.58 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G-~~V~vlE~~~ 80 (530)
.++|+|||+|..|.+.|+.|+..| .++.|+|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 468999999999999999999998 6899999754
No 489
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.62 E-value=0.88 Score=38.72 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G-~~V~vlE~~~ 80 (530)
..+|+|||+|..|.+.|..|.+.| .+|++++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 367999999999999999999996 7899998763
No 490
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=88.56 E-value=0.75 Score=43.65 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G-~~V~vlE~~ 79 (530)
..+|+|+|+|-+|.++++.|++.| .+|+|+.|+
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 457999999999999999999999 699999886
No 491
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.51 E-value=0.65 Score=44.57 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999998763
No 492
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.50 E-value=0.57 Score=50.81 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLS-KQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La-~~G~~V~vlE~~~ 80 (530)
.-.+|.|||+|..|...|..++ ..|++|+++|.++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 3467999999999999999999 8899999999864
No 493
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=88.44 E-value=0.76 Score=43.69 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
..+|+|||+|-+|-++++.|++.|. +|+|+.|+
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4579999999999999999999996 79999876
No 494
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.38 E-value=0.75 Score=45.80 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 46 ~~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
....|+|||.|..|..+|..|...|.+|+++|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 44689999999999999999999999999999764
No 495
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.37 E-value=0.83 Score=41.89 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4689999999999999999999997 89999864
No 496
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.37 E-value=0.7 Score=43.51 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Q 009646 48 KKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGN 80 (530)
Q Consensus 48 ~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~~ 80 (530)
.+|+|||+|-++-++++.|++.|. +|+|+.|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 479999999999999999999997 699999864
No 497
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=88.33 E-value=0.83 Score=43.34 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~-~V~vlE~~ 79 (530)
.+.|+|||+|-++-++++.|++.|. +|+|+.|.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3579999999999999999999996 79999875
No 498
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=88.31 E-value=0.6 Score=52.21 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~~ 80 (530)
..+|+|||||..|+-+|..+.+.|.+|+++.+.+
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4689999999999999999999999999998764
No 499
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.04 E-value=0.79 Score=44.04 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCC
Q 009646 49 KIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDGN 80 (530)
Q Consensus 49 dVvIIGaG~aGL~aA~~La~~G~--~V~vlE~~~ 80 (530)
+|+|||+|..|.++|+.|..++. ++.|+|...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999999886 799999743
No 500
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=87.81 E-value=0.81 Score=47.73 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009646 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (530)
Q Consensus 47 ~~dVvIIGaG~aGL~aA~~La~~G~~V~vlE~~ 79 (530)
.+.|+|+|+|-+|.++|+.|++.|.+|+++.++
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999999999999999999999999999875
Done!