BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009647
(530 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 188 bits (478), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 141/502 (28%), Positives = 232/502 (46%), Gaps = 35/502 (6%)
Query: 36 QRRRQNAVTVGKERR-ESLVRAKRLCRVGTSADGEVSSDSDMMVDEE-QSILEMQTSSAV 93
+RR V + K +R E+L + + AD + +S + D++ S L+ +
Sbjct: 34 RRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMT 93
Query: 94 EELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 153
++L S MQ++++A PPI+ ++AG +P LV+ + P+
Sbjct: 94 QQLNS-------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146
Query: 154 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 212
LEAAW LTNIA+G +TK + L S V EQ WALGNVAG+ +
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206
Query: 213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272
+R+ +L A+ P+ + NK S +RTA W LSNL +G P+P + V L + +
Sbjct: 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAK 264
Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
+ D E + W + YLS A ++ + + LVE L+ ++L + P LR++
Sbjct: 265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAV 323
Query: 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 392
GN+V G+ V+ G V+ L L S +KKEA W +SNI AG+ E Q
Sbjct: 324 GNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 393 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452
+ KKE + + N + + G +P +I+ LV +GC+
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCI 430
Query: 453 SGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQ 503
DL+ AD + L +E +L RG+ +E +E+ G++ + Q
Sbjct: 431 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 490
Query: 504 FHENEDLRNMANGLVDKYFGED 525
+EN+ + A +++ YFGE+
Sbjct: 491 QNENDKIYEKAYKIIETYFGEE 512
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 188 bits (477), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 150/500 (30%), Positives = 236/500 (47%), Gaps = 46/500 (9%)
Query: 36 QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
+RR N V + K RRE + KR R G A V + + VD++ +E
Sbjct: 29 RRREDNMVEIRKSRREESLLKKR--REGLQAQAPVPASAATGVDKK-----------LES 75
Query: 96 LKSAVA--YHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 153
L + + Y +Q + A PPIE +++G +P VQ L +
Sbjct: 76 LPAMIGGVYSDDNNLQ--LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQ 133
Query: 154 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 212
EAAW LTNIA+G E TK I L SS V EQ WALGNVAG+ +
Sbjct: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 193
Query: 213 FRNVLLSQGA-LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL 271
R+++L+ GA LP LA++ K S +R A W LSN +G P+P+ E + L A+
Sbjct: 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG-KPQPSFEQTR--PALPALA 250
Query: 272 RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS 331
R + DEE+ T+ W + YLS +N ++++GV LVE L S +LIP LR+
Sbjct: 251 RLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLLHPSPSVLIPALRT 309
Query: 332 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK 391
+GN+V GD + ++ H ++++L + LK + +KKEA W +SNI AG+ +
Sbjct: 310 VGNIVTGDDAQTQCII--DHQALPCLLSLLTQNLK---KSIKKEACWTISNITAGNKDQI 364
Query: 392 QXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 451
Q FDIKKE A+ + N T G + + LV GC
Sbjct: 365 QAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN----ATSGGS-----HDQIKYLVSEGC 415
Query: 452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG---------TKLVEREDGIDAMERF 502
+ DL+ DI + L+ +E +L+ + +++++ +G++ +E
Sbjct: 416 IKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL 475
Query: 503 QFHENEDLRNMANGLVDKYF 522
Q H+N ++ A +++ Y+
Sbjct: 476 QSHDNNEIYEKAVKILEAYW 495
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 203/406 (50%), Gaps = 29/406 (7%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AH 186
PPIE +++G +P VQ L + EAAW LTNIA+G E TK I
Sbjct: 70 PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 129
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGA-LPPLARMMLPNKGSTVRTAAWAL 245
L SS V EQ WALGNVAG+ + R+++L+ GA LP LA++ K S +R A W L
Sbjct: 130 LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 189
Query: 246 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK 305
SN +G P+P+ E + L A+ R + DEE+ T+ W + YLS +N +++
Sbjct: 190 SNFCRG-KPQPSFEQTR--PALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 246
Query: 306 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL 365
+GV LVE L S +LIP LR++GN+V GD + ++ H ++++L + L
Sbjct: 247 AGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCII--DHQALPCLLSLLTQNL 303
Query: 366 KSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNL 425
K + +KKEA W +SNI AG+ + Q FDIKKE A+ + N
Sbjct: 304 K---KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN- 359
Query: 426 CVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHE 485
T G + + LV GC+ DL+ DI + L+ +E +L+ +
Sbjct: 360 ---ATSGGS-----HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDK 411
Query: 486 G---------TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
+++++ +G++ +E Q H+N ++ A +++ Y+
Sbjct: 412 TLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 457
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 200/426 (46%), Gaps = 26/426 (6%)
Query: 108 MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 167
MQ++++A PPI+ ++AG +P LV+ + P+ LEAAW LTNIA+
Sbjct: 13 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 72
Query: 168 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 226
G +TK + L S V EQ WALGNVAG+ ++R+ +L A+ P+
Sbjct: 73 GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 132
Query: 227 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 286
+ NK S +RTA W LSNL +G P+P + V L + + + D E +
Sbjct: 133 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 190
Query: 287 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 346
W + YLS A ++ + + LVE L+ ++L + P LR++GN+V G+ V
Sbjct: 191 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 249
Query: 347 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 406
+ G V+ L L S +KKEA W +SNI AG+ E Q
Sbjct: 250 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 303
Query: 407 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466
+ KKE + + N + + G +P +I+ LV +GC+ DL+ AD
Sbjct: 304 LEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 356
Query: 467 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 517
+ L +E +L RG+ +E +E+ G++ + Q +EN+ + A +
Sbjct: 357 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 416
Query: 518 VDKYFG 523
++ YFG
Sbjct: 417 IETYFG 422
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/428 (29%), Positives = 201/428 (46%), Gaps = 26/428 (6%)
Query: 108 MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 167
MQ++++A PPI+ ++AG +P LV+ + P+ LEAAW LTNIA+
Sbjct: 14 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 73
Query: 168 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 226
G +TK + L S V EQ WALGNVAG+ ++R+ +L A+ P+
Sbjct: 74 GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 133
Query: 227 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 286
+ NK S +RTA W LSNL +G P+P + V L + + + D E +
Sbjct: 134 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 191
Query: 287 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 346
W + YLS A ++ + + LVE L+ ++L + P LR++GN+V G+ V
Sbjct: 192 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 250
Query: 347 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 406
+ G V+ L L S +KKEA W +SNI AG+ E Q
Sbjct: 251 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 304
Query: 407 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466
KKE + + N + + G +P +I+ LV +GC+ DL+ AD
Sbjct: 305 LEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 357
Query: 467 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 517
+ L +E +L RG+ +E +E+ G++ + Q +EN+ + A +
Sbjct: 358 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 417
Query: 518 VDKYFGED 525
++ YFGE+
Sbjct: 418 IETYFGEE 425
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/428 (29%), Positives = 201/428 (46%), Gaps = 26/428 (6%)
Query: 108 MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 167
MQ++++A PPI+ ++AG +P LV+ + P+ LEAAW LTNIA+
Sbjct: 14 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 73
Query: 168 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 226
G +TK + L S V EQ WALGNVAG+ ++R+ +L A+ P+
Sbjct: 74 GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 133
Query: 227 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 286
+ NK S +RTA W LSNL +G P+P + V L + + + D E +
Sbjct: 134 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 191
Query: 287 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 346
W + YLS A ++ + + LVE L+ ++L + P LR++GN+V G+ V
Sbjct: 192 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 250
Query: 347 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 406
+ G V+ L L S +KKEA W +SNI AG+ E Q
Sbjct: 251 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 304
Query: 407 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466
KKE + + N + + G +P +I+ LV +GC+ DL+ AD
Sbjct: 305 LEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 357
Query: 467 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 517
+ L +E +L RG+ +E +E+ G++ + Q +EN+ + A +
Sbjct: 358 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 417
Query: 518 VDKYFGED 525
++ YFGE+
Sbjct: 418 IETYFGEE 425
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 124/426 (29%), Positives = 200/426 (46%), Gaps = 26/426 (6%)
Query: 108 MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 167
MQ++++A PPI+ ++AG +P LV+ + P+ LEAAW LTNIA+
Sbjct: 13 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 72
Query: 168 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 226
G +TK + L S V EQ WALGNVAG+ ++R+ +L A+ P+
Sbjct: 73 GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 132
Query: 227 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 286
+ NK S +RTA W LSNL +G P+P + V L + + + D E +
Sbjct: 133 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 190
Query: 287 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 346
W + YLS A ++ + + LVE L+ ++L + P LR++GN+V G+ V
Sbjct: 191 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 249
Query: 347 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 406
+ G V+ L L S +KKEA W +SNI AG+ E Q
Sbjct: 250 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 303
Query: 407 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466
+ KKE + + N + + G +P +I+ LV +GC+ DL+ AD
Sbjct: 304 LEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 356
Query: 467 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 517
+ L +E ++ RG+ +E +E+ G++ + Q +EN+ + A +
Sbjct: 357 IEVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 416
Query: 518 VDKYFG 523
++ YFG
Sbjct: 417 IETYFG 422
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/440 (28%), Positives = 202/440 (45%), Gaps = 26/440 (5%)
Query: 94 EELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 153
+EL MQ++++A PPI+ ++AG +P LV+ + P+
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 154 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 212
LEAAW LTNIA+G +TK + L S V EQ WALGNVAG+ +
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272
+R+ +L A+ P+ + NK S +RTA W LSNL +G P+P + V L + +
Sbjct: 121 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAK 178
Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
+ D E + W + YLS A ++ + + LVE L+ ++L + P LR++
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAV 237
Query: 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 392
GN+V G+ V+ G V+ L L S +KKEA W +SNI AG+ E Q
Sbjct: 238 GNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 393 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452
KKE + + N + + G +P +I+ LV +GC+
Sbjct: 292 AVIDANLIPPLVKLLEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCI 344
Query: 453 SGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQ 503
DL+ AD + L +E +L RG+ +E +E+ G++ + Q
Sbjct: 345 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 404
Query: 504 FHENEDLRNMANGLVDKYFG 523
+EN+ + A +++ YFG
Sbjct: 405 QNENDKIYEKAYKIIETYFG 424
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 201/439 (45%), Gaps = 26/439 (5%)
Query: 94 EELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 153
+EL MQ++++A PPI+ ++AG +P LV+ + P+
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 154 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 212
LEAAW LTNIA+G +TK + L S V EQ WALGNVAG+ +
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272
+R+ +L A+ P+ + NK S +RTA W LSNL +G P+P + V L + +
Sbjct: 121 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAK 178
Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
+ D E + W + YLS A ++ + + LVE L+ ++L + P LR++
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAV 237
Query: 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 392
GN+V G+ V+ G V+ L L S +KKEA W +SNI AG+ E Q
Sbjct: 238 GNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 393 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452
KKE + + N + + G +P +I+ LV +GC+
Sbjct: 292 AVIDANLIPPLVKLLEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCI 344
Query: 453 SGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQ 503
DL+ AD + L +E +L RG+ +E +E+ G++ + Q
Sbjct: 345 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 404
Query: 504 FHENEDLRNMANGLVDKYF 522
+EN+ + A +++ YF
Sbjct: 405 QNENDKIYEKAYKIIETYF 423
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 77 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 136
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 137 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 196
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 197 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 254
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 255 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 307
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 308 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 367
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 368 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 418
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 419 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 463
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 75 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 134
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 135 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 194
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 195 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 252
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 253 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 305
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 306 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 365
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 366 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 416
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 417 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 461
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 91 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 211 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 269 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 321
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 382 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 91 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 211 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 269 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 321
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 382 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 91 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 211 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 269 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 321
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 382 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 67 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 126
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 127 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 186
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 187 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 244
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 245 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 297
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 298 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 357
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 358 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 408
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 409 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 453
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 41 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 100
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 101 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 160
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 161 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 218
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 219 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 271
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 332 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 47 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 106
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 107 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 166
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 167 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 224
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 225 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 277
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 278 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 337
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 338 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 388
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 389 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 40 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 99
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 100 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 159
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 160 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 217
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 218 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 270
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 271 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 330
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 331 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 381
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 382 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 41 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 100
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 101 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 160
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 161 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 218
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 219 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 271
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 332 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 40 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 99
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 100 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 159
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 160 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 217
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 218 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 270
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 271 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 330
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 331 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 381
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 382 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 41 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 100
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 101 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 160
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 161 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 218
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 219 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 271
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 332 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 36 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 95
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 96 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 155
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 156 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 213
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 214 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 266
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 267 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 326
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 327 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 377
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 378 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 36 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 95
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ + +R
Sbjct: 96 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 155
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 156 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 213
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 214 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 266
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE A+
Sbjct: 267 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 326
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 327 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 377
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 378 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 188/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 42 PPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 101
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG+G FR++++ GA+ P LA + +P+ S +R
Sbjct: 102 LLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNL 161
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P + V+ +L ++R L D E+ + W + YL+ N
Sbjct: 162 TWTLSNLCRNKNPAPPID--AVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIG 219
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK+GV+ LV+ L S L ++ P LR++GN+V G V+ G +AV
Sbjct: 220 MVVKTGVVPQLVKLLGAS-ELPIVTPALRAIGNIVTGTDEQTQVVIDAG------ALAVF 272
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +KE +
Sbjct: 273 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWA 332
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + + L + + +
Sbjct: 333 VTNYTSGGT---------VEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAA 383
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 384 EKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYF 428
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 187/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
PPI+ ++AG IP V L E+AW LTNIA+G E+TK
Sbjct: 110 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 169
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
L + ++EQ WALGN+AG G FR++++ GA+ P LA + +P+ + +R
Sbjct: 170 LLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 229
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
W LSNL + +P P L V+ +L ++R L D E+ + W + YL+ N
Sbjct: 230 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 287
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
++VK GV+ LV+ L + L ++ P LR++GN+V G V+ G +AV
Sbjct: 288 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 340
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
L + ++KEA W +SNI AG + Q F +K A+
Sbjct: 341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA 400
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
+ N T E +V LV G + ++L+ + D + ++ L + + +
Sbjct: 401 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
T+ ++E G+D +E Q HENE + + L++KYF
Sbjct: 452 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 180/410 (43%), Gaps = 30/410 (7%)
Query: 128 PPIETALKA-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-A 185
PPI+ + G + V+ L E+AW LTNIA+G +T+ I
Sbjct: 51 PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 110
Query: 186 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWA 244
L V EQ WALGN+AG+ R+ +L LPPL ++ N+ + R A WA
Sbjct: 111 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 170
Query: 245 LSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV 304
LSNL +G P P E KV L+ + L +D ++ + W + YLS N ++
Sbjct: 171 LSNLCRGKSPPP--EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 228
Query: 305 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC 364
+GV + LVE L N +++ P LR++GN+V GD +L + + K
Sbjct: 229 DAGVCRRLVE-LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK- 286
Query: 365 LKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGN 424
+KKEA W +SNI AG+ Q F +KE A+ + N
Sbjct: 287 -----ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 341
Query: 425 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR----- 479
T G E + LV GC+ DL+ D + ++ L +E +LR
Sbjct: 342 ----ATSGGSA-----EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 392
Query: 480 ----GMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 525
G + L+E G+D +E Q HEN+++ A L++ YFG +
Sbjct: 393 AKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 442
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 180/410 (43%), Gaps = 30/410 (7%)
Query: 128 PPIETALKA-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-A 185
PPI+ + G + V+ L E+AW LTNIA+G +T+ I
Sbjct: 54 PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 113
Query: 186 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWA 244
L V EQ WALGN+AG+ R+ +L LPPL ++ N+ + R A WA
Sbjct: 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173
Query: 245 LSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV 304
LSNL +G P P E KV L+ + L +D ++ + W + YLS N ++
Sbjct: 174 LSNLCRGKSPPP--EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 231
Query: 305 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC 364
+GV + LVE L N +++ P LR++GN+V GD +L + + K
Sbjct: 232 DAGVCRRLVE-LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK- 289
Query: 365 LKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGN 424
+KKEA W +SNI AG+ Q F +KE A+ + N
Sbjct: 290 -----ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344
Query: 425 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR----- 479
T G E + LV GC+ DL+ D + ++ L +E +LR
Sbjct: 345 ----ATSGGSA-----EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 395
Query: 480 ----GMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 525
G + L+E G+D +E Q HEN+++ A L++ YFG +
Sbjct: 396 AKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 16/175 (9%)
Query: 130 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 188
I+ + AGA+P LVQ L+ SP+EQ+L EA W L+NIA+G E+ + + L
Sbjct: 47 IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ--AVIDAGALPALV 102
Query: 189 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 245
+ SSP + ++ WAL N+A G E ++ GALP L +++ ++ A WAL
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 246 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 300
SN+ G + + + + G L A+++ L +E++ E W ALSN+A+
Sbjct: 163 SNIASGGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALW------ALSNIAS 209
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 206 VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG 265
+ +G E ++ GALP L +++ ++ A WALSN+ G + + + + G
Sbjct: 39 ILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--IQAVIDAG 96
Query: 266 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL 325
L A+++ L +E++ E W + +++ N ++ +G L LV+ L++ N Q+L
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QIL 155
Query: 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385
L +L N+ +G + I V+ G + LV+ L S + + +EA W LSNIA+
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIAS 209
Query: 386 GSVEHKQ 392
G E KQ
Sbjct: 210 GGNEQKQ 216
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 19/219 (8%)
Query: 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 362
++ +G L LV+ L++ N Q+L L +L N+ +G + I V+ G + LV
Sbjct: 50 VIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAG------ALPALV 102
Query: 363 KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVL 422
+ L S + + +EA W LSNIA+G E Q I +E + L
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 423 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482
N+ E + +++ G L + L+ S + + + L + + G
Sbjct: 163 SNIASGGNE----------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-- 210
Query: 483 NHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521
+E + V+ ++ +E+ Q HENE ++ A ++K
Sbjct: 211 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 130 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXX-XXXXIAHL 187
I+ + AGA+P LVQ L+ SP+EQ+L EA W L+NIA+G E+ + + L
Sbjct: 47 IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104
Query: 188 GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN 247
+ + ++ WAL N+A G E ++ GALP L +++ ++ A WALSN
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 248 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEV 285
+ G + + + +K G L+ + + +E++ E
Sbjct: 165 IASGGNEQ--KQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324
G L A+++ L +E++ E W + +++ N ++ +G L LV+ L++ N Q+
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 112
Query: 325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
L L +L N+ +G + I V+ G + LV+ L S + + +EA W LSNIA
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 385 AGSVEHKQ 392
+G E KQ
Sbjct: 167 SGGNEQKQ 174
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 18/203 (8%)
Query: 318 TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 377
S+ +Q + R +++ + I V+ G + LV+ L S + + +EA
Sbjct: 22 NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEAL 75
Query: 378 WVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPK 437
W LSNIA+G E Q I +E + L N+ E
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE------ 129
Query: 438 LIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID 497
+ +++ G L + L+ S + + + L + + G +E + V+ ++
Sbjct: 130 ----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALE 183
Query: 498 AMERFQFHENEDLRNMANGLVDK 520
+E+ Q HENE ++ A ++K
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEK 206
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 10/160 (6%)
Query: 130 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 188
I+ + AGA+P LVQ L+ SP+EQ+L EA W L+NIA+G E+ + + L
Sbjct: 47 IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ--AVIDAGALPALV 102
Query: 189 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 245
+ SSP + ++ WAL N+A G E ++ GALP L +++ ++ A WAL
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 246 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEV 285
SN+ G + + + +K G L+ + + +E++ E
Sbjct: 163 SNIASGGNEQ--KQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 16/166 (9%)
Query: 139 IPVLVQCLAFGSPDEQLLEAAW-CLTNIAAGKQEETKXXXXXXXXXIAHLGEKSSSP--- 194
+P +VQ L SPD+Q L++A L+ IA+G E+ + + L + SSP
Sbjct: 14 LPQMVQQL--NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGA--LPALVQLLSSPNEQ 69
Query: 195 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP 254
+ ++ WAL N+A G E ++ GALP L +++ ++ A WALSN+ G +
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 255 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 300
+ + + G L A+++ L +E++ E W ALSN+A+
Sbjct: 130 Q--IQAVIDAGALPALVQLLSSPNEQILQEALW------ALSNIAS 167
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324
G L A+++ L +E++ E W + +++ N ++ +G L LV+ L++ N Q+
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 112
Query: 325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
L L +L N+ +G + I V+ G + LV+ L S + + +EA W LSNIA
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 385 AGSVEHKQ 392
+G E KQ
Sbjct: 167 SGGNEQKQ 174
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 19/210 (9%)
Query: 312 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 371
+V++L + + Q L LR L + +G + I V+ G + LV+ L S +
Sbjct: 17 MVQQLNSPDQ-QELQSALRKLSQIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQ 69
Query: 372 LKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTE 431
+ +EA W LSNIA+G E Q I +E + L N+ E
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 432 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVE 491
+ +++ G L + L+ S + + + L + + G +E + V+
Sbjct: 130 ----------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVK 177
Query: 492 REDGIDAMERFQFHENEDLRNMANGLVDKY 521
++ +E+ Q HENE ++ A ++K
Sbjct: 178 EAGALEKLEQLQSHENEKIQKEAQEALEKL 207
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 130 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 188
I+ + AGA+P LVQ L+ SP+EQ+L EA W L+NIA+G E+ + + L
Sbjct: 47 IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGA--LPALV 102
Query: 189 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 245
+ SSP + ++ WAL N+A G E ++ GALP L +++ ++ A WAL
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 246 SNLIKG 251
SN+ G
Sbjct: 163 SNIASG 168
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324
G L A+++ L +E++ E W + +++ N ++ +G L LV+ L++ N Q+
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 112
Query: 325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
L L +L N+ +G + I V+ G + LV+ L S + + +EA W LSNIA
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 385 AGSVEHKQ 392
+G E KQ
Sbjct: 167 SGGNEQKQ 174
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 16/166 (9%)
Query: 139 IPVLVQCLAFGSPDEQLLEAAW-CLTNIAAGKQEETKXXXXXXXXXIAHLGEKSSSP--- 194
+P +VQ L SPD+Q L++A L+ IA+G E+ + + L + SSP
Sbjct: 14 LPQMVQQL--NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGA--LPALVQLLSSPNEQ 69
Query: 195 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP 254
+ ++ WAL N+A G E ++ GALP L +++ ++ A WALSN+ G +
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 255 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 300
+ + + G L A+++ L +E++ E W ALSN+A+
Sbjct: 130 Q--IQAVIDAGALPALVQLLSSPNEQILQEALW------ALSNIAS 167
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 130 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 188
I+ + AGA+P LVQ L+ SP+EQ+L EA W L+NIA+G E+ + + L
Sbjct: 89 IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGA--LPALV 144
Query: 189 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 229
+ SSP + ++ WAL N+A G E + + GA P L ++
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 16/234 (6%)
Query: 157 EAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215
EAA L IA+G K + L + S V ++ A AL N+A +E
Sbjct: 21 EAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80
Query: 216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VD-GLLDAILR 272
++ G + L +++ + AA AL+N+ GPD E IK VD G ++ +++
Sbjct: 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-----EAIKAIVDAGGVEVLVK 135
Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
L D E+ E A + +++ + A +V +G +++LV +L TS ++ R+L
Sbjct: 136 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV-KLLTSTDSEVQKEAARAL 194
Query: 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386
N+ +G +S I ++ G + VL K L S ++KEA L NI +G
Sbjct: 195 ANIASGPTSAIKAIVDAGG------VEVLQKLLTSTDSEVQKEAQRALENIKSG 242
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 235 GSTV-RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 293
GS V +T A ++ I GP K LI+ ++ + L + E TT +WVVV+ S
Sbjct: 26 GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKS 85
Query: 294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 343
++ L+V + ++ LA+ N+L L L G L D ST
Sbjct: 86 LIT--THHLMVYGN--ERFIQYLASRNTLFNLSNFLDKSG-LQGYDMSTF 130
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 235 GSTV-RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 293
GS V +T A ++ I GP K LI+ ++ + L + E TT +WVVV+ S
Sbjct: 26 GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKS 85
Query: 294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 343
++ L+V + ++ LA+ N+L L L G L D ST
Sbjct: 86 LIT--THHLMVYGN--ERFIQYLASRNTLFNLSNFLDKSG-LQGYDMSTF 130
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 235 GSTV-RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 293
GS V +T A ++ I GP K LI+ ++ + L + E TT +WVVV+ S
Sbjct: 26 GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKS 85
Query: 294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 343
++ L+V + ++ LA+ N+L L L G L D ST
Sbjct: 86 LIT--THHLMVYGN--ERFIQYLASRNTLFNLSNFLDKSG-LQGYDMSTF 130
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 235 GSTV-RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 293
GS V +T A ++ I GP K LI+ ++ + L + E TT +WVVV+ S
Sbjct: 19 GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKS 78
Query: 294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 343
++ L+V + ++ LA+ N+L L L G L D ST
Sbjct: 79 LIT--THHLMVYGN--ERFIQYLASRNTLFNLSNFLDKSG-LQGYDMSTF 123
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core
pdb|1W63|C Chain C, Ap1 Clathrin Adaptor Core
pdb|1W63|E Chain E, Ap1 Clathrin Adaptor Core
pdb|1W63|G Chain G, Ap1 Clathrin Adaptor Core
pdb|1W63|I Chain I, Ap1 Clathrin Adaptor Core
pdb|1W63|K Chain K, Ap1 Clathrin Adaptor Core
Length = 618
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 185 AHLGEKSSSPVAEQCAWALGN-----VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVR 239
A LG+ S P+ + AW +G V+G+ EE + +++ + + +L + ST
Sbjct: 467 AILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSV 526
Query: 240 TAAWALSNLIK 250
T +AL+ ++K
Sbjct: 527 TRGYALTAIMK 537
>pdb|2HUF|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUF|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUI|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUI|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUU|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
pdb|2HUU|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
Length = 393
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 246 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK 305
+ L+ GP P A + + +D + IL HL ++ ++ V YL +N+AT L
Sbjct: 19 NKLLMGPGPSNAPQRV-LDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSA 77
Query: 306 SG 307
SG
Sbjct: 78 SG 79
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRN-----VLLSQGALPPLARMMLPNKGSTVRTA 241
+G+ E CA AL N+ + + L + LP +AR++ VR+
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351
Query: 242 AWALSNLIKGP 252
A LSN+ + P
Sbjct: 352 ASLLSNMSRHP 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,453,382
Number of Sequences: 62578
Number of extensions: 481239
Number of successful extensions: 1635
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 55
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)