Query 009647
Match_columns 530
No_of_seqs 356 out of 2442
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 15:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 2.5E-97 5E-102 687.8 35.9 475 25-530 13-503 (526)
2 KOG0166 Karyopherin (importin) 100.0 2.6E-92 5.6E-97 705.8 46.8 472 23-529 9-492 (514)
3 PLN03200 cellulose synthase-in 100.0 7.1E-43 1.5E-47 397.0 40.7 402 99-527 194-642 (2102)
4 KOG0166 Karyopherin (importin) 100.0 1.2E-40 2.5E-45 334.3 33.7 364 139-523 68-436 (514)
5 PLN03200 cellulose synthase-in 100.0 2.8E-39 6E-44 367.8 41.7 409 99-526 409-863 (2102)
6 COG5064 SRP1 Karyopherin (impo 100.0 2.6E-39 5.6E-44 301.2 18.7 363 139-521 73-441 (526)
7 KOG4224 Armadillo repeat prote 100.0 4.4E-28 9.5E-33 228.2 25.9 349 103-480 94-447 (550)
8 KOG4224 Armadillo repeat prote 100.0 2E-26 4.2E-31 217.1 24.4 351 102-480 134-494 (550)
9 PF05804 KAP: Kinesin-associat 99.9 2.7E-22 5.8E-27 213.2 37.4 374 111-521 266-647 (708)
10 PF05804 KAP: Kinesin-associat 99.9 6.6E-19 1.4E-23 187.4 31.1 352 93-482 292-652 (708)
11 KOG1048 Neural adherens juncti 99.8 1.1E-18 2.3E-23 181.6 24.6 406 92-525 231-686 (717)
12 KOG0168 Putative ubiquitin fus 99.8 2.4E-17 5.2E-22 170.6 24.9 388 95-505 168-654 (1051)
13 KOG2122 Beta-catenin-binding p 99.7 5.7E-16 1.2E-20 167.4 24.2 366 94-481 197-603 (2195)
14 PF10508 Proteasom_PSMB: Prote 99.7 6.1E-14 1.3E-18 147.9 37.5 401 99-521 43-460 (503)
15 KOG4199 Uncharacterized conser 99.7 1.4E-13 3.1E-18 129.6 30.3 320 136-476 103-441 (461)
16 PF10508 Proteasom_PSMB: Prote 99.7 3.5E-13 7.5E-18 142.2 36.4 384 109-524 16-421 (503)
17 KOG4199 Uncharacterized conser 99.7 7E-14 1.5E-18 131.6 26.8 307 104-426 117-443 (461)
18 KOG1048 Neural adherens juncti 99.7 4.8E-15 1E-19 154.6 19.9 363 93-479 274-684 (717)
19 PRK09687 putative lyase; Provi 99.7 1.6E-14 3.5E-19 140.2 22.4 254 179-520 24-279 (280)
20 PRK09687 putative lyase; Provi 99.6 2.3E-14 5.1E-19 139.1 21.6 254 138-476 24-279 (280)
21 KOG4500 Rho/Rac GTPase guanine 99.6 2.1E-13 4.6E-18 132.2 22.0 326 133-479 83-431 (604)
22 KOG4500 Rho/Rac GTPase guanine 99.5 3.5E-12 7.6E-17 123.9 25.0 321 153-498 57-406 (604)
23 PF04826 Arm_2: Armadillo-like 99.5 1.8E-12 3.8E-17 123.2 20.7 227 263-514 10-253 (254)
24 PRK13800 putative oxidoreducta 99.5 8.5E-12 1.8E-16 140.8 27.9 272 97-475 624-895 (897)
25 cd00020 ARM Armadillo/beta-cat 99.5 6.3E-13 1.4E-17 112.6 13.8 117 132-250 2-120 (120)
26 PF04826 Arm_2: Armadillo-like 99.5 3E-12 6.6E-17 121.6 19.0 195 133-338 8-206 (254)
27 KOG1222 Kinesin associated pro 99.5 4.2E-11 9.2E-16 117.8 26.2 354 131-518 298-658 (791)
28 KOG1293 Proteins containing ar 99.4 6.9E-11 1.5E-15 120.9 27.0 406 104-524 19-534 (678)
29 PTZ00429 beta-adaptin; Provisi 99.4 2.2E-10 4.8E-15 124.3 32.7 292 93-427 34-326 (746)
30 PF01602 Adaptin_N: Adaptin N 99.4 2E-10 4.4E-15 123.3 30.8 327 94-479 7-333 (526)
31 KOG2171 Karyopherin (importin) 99.4 1.6E-09 3.4E-14 117.7 36.8 364 94-483 117-508 (1075)
32 KOG2171 Karyopherin (importin) 99.4 2.6E-10 5.7E-15 123.6 30.7 401 94-518 39-499 (1075)
33 cd00020 ARM Armadillo/beta-cat 99.4 2.4E-12 5.2E-17 109.0 11.5 118 302-426 2-119 (120)
34 KOG2122 Beta-catenin-binding p 99.4 3E-11 6.6E-16 131.6 22.0 325 95-428 239-602 (2195)
35 PRK13800 putative oxidoreducta 99.4 1.3E-10 2.9E-15 131.2 27.5 277 135-519 619-895 (897)
36 PF01602 Adaptin_N: Adaptin N 99.3 6E-10 1.3E-14 119.7 25.0 368 102-519 122-520 (526)
37 KOG1293 Proteins containing ar 99.2 3.5E-09 7.7E-14 108.6 24.5 370 93-481 94-535 (678)
38 cd00256 VATPase_H VATPase_H, r 99.2 1.1E-08 2.3E-13 103.8 26.6 331 179-523 54-425 (429)
39 KOG2023 Nuclear transport rece 99.2 4.3E-10 9.3E-15 114.8 16.2 308 137-478 128-504 (885)
40 cd00256 VATPase_H VATPase_H, r 99.2 2.6E-08 5.6E-13 101.0 27.2 323 94-426 56-424 (429)
41 KOG1241 Karyopherin (importin) 99.1 5.7E-09 1.2E-13 108.5 21.5 357 101-482 266-671 (859)
42 KOG0168 Putative ubiquitin fus 99.1 3.7E-09 8.1E-14 110.7 19.8 257 139-409 169-437 (1051)
43 KOG2023 Nuclear transport rece 99.1 1.1E-08 2.3E-13 104.8 21.0 398 92-522 11-504 (885)
44 PF01749 IBB: Importin beta bi 99.0 8.7E-11 1.9E-15 94.5 1.7 84 25-117 12-97 (97)
45 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.5E-08 3.2E-13 101.0 18.0 232 267-519 57-310 (312)
46 KOG1061 Vesicle coat complex A 99.0 2E-08 4.3E-13 105.2 18.6 337 105-483 24-419 (734)
47 KOG1222 Kinesin associated pro 99.0 5.8E-07 1.2E-11 89.2 27.2 352 94-480 303-664 (791)
48 PTZ00429 beta-adaptin; Provisi 99.0 1.2E-06 2.6E-11 95.5 31.6 359 102-516 148-539 (746)
49 KOG0946 ER-Golgi vesicle-tethe 98.9 1.8E-06 3.9E-11 90.5 29.1 324 91-429 22-401 (970)
50 PF03224 V-ATPase_H_N: V-ATPas 98.8 7.2E-08 1.6E-12 96.0 14.3 229 179-418 56-305 (312)
51 KOG1059 Vesicle coat complex A 98.8 9.8E-06 2.1E-10 84.4 29.3 147 179-341 257-405 (877)
52 KOG2160 Armadillo/beta-catenin 98.8 4.9E-07 1.1E-11 87.7 18.7 185 277-479 95-282 (342)
53 KOG2160 Armadillo/beta-catenin 98.8 4.9E-07 1.1E-11 87.6 18.2 186 104-294 93-282 (342)
54 KOG0946 ER-Golgi vesicle-tethe 98.8 2E-06 4.4E-11 90.1 23.6 285 136-429 21-348 (970)
55 KOG0213 Splicing factor 3b, su 98.8 4.7E-06 1E-10 86.8 25.6 309 179-521 800-1140(1172)
56 KOG2759 Vacuolar H+-ATPase V1 98.8 4.3E-06 9.4E-11 82.3 23.9 324 93-427 67-438 (442)
57 KOG2759 Vacuolar H+-ATPase V1 98.7 2.2E-06 4.9E-11 84.2 20.9 234 144-386 163-439 (442)
58 KOG1241 Karyopherin (importin) 98.7 4.4E-06 9.5E-11 87.5 23.0 275 103-395 226-540 (859)
59 COG5215 KAP95 Karyopherin (imp 98.6 9.9E-06 2.1E-10 82.2 22.9 276 138-427 363-668 (858)
60 COG5215 KAP95 Karyopherin (imp 98.6 8.5E-06 1.8E-10 82.7 21.2 357 103-479 230-668 (858)
61 KOG1517 Guanine nucleotide bin 98.6 7.4E-06 1.6E-10 88.4 21.3 278 106-397 448-744 (1387)
62 KOG3678 SARM protein (with ste 98.5 1.4E-05 3E-10 79.4 19.2 272 132-425 175-450 (832)
63 KOG1062 Vesicle coat complex A 98.5 0.00013 2.8E-09 77.3 27.2 212 110-344 29-270 (866)
64 PF00514 Arm: Armadillo/beta-c 98.5 3.4E-07 7.4E-12 61.2 5.3 40 387-426 1-40 (41)
65 TIGR02270 conserved hypothetic 98.5 3.5E-05 7.7E-10 78.8 22.4 241 138-478 55-295 (410)
66 COG5096 Vesicle coat complex, 98.4 0.00015 3.2E-09 78.1 26.9 168 103-294 28-195 (757)
67 COG5369 Uncharacterized conser 98.4 1.1E-05 2.4E-10 81.4 15.8 301 200-520 410-738 (743)
68 KOG3678 SARM protein (with ste 98.4 2E-05 4.4E-10 78.2 17.0 238 260-519 175-448 (832)
69 COG5369 Uncharacterized conser 98.4 1.5E-06 3.3E-11 87.4 9.2 306 157-477 406-739 (743)
70 KOG2973 Uncharacterized conser 98.4 0.00012 2.7E-09 69.4 21.3 288 141-479 7-315 (353)
71 KOG1062 Vesicle coat complex A 98.3 0.00063 1.4E-08 72.3 27.6 237 270-520 257-541 (866)
72 PF00514 Arm: Armadillo/beta-c 98.3 8.2E-07 1.8E-11 59.3 4.2 41 210-250 1-41 (41)
73 KOG1059 Vesicle coat complex A 98.3 0.00023 5E-09 74.5 23.5 235 197-478 127-364 (877)
74 COG5181 HSH155 U2 snRNP splice 98.3 0.00021 4.5E-09 73.5 22.8 305 179-517 605-941 (975)
75 TIGR02270 conserved hypothetic 98.3 0.00019 4.2E-09 73.4 21.8 243 179-524 55-297 (410)
76 KOG1517 Guanine nucleotide bin 98.2 3.2E-05 7E-10 83.6 16.4 239 179-428 473-733 (1387)
77 KOG0213 Splicing factor 3b, su 98.2 0.00099 2.1E-08 70.1 26.5 385 97-521 639-1063(1172)
78 KOG1060 Vesicle coat complex A 98.2 0.00038 8.2E-09 73.7 22.5 278 149-480 154-459 (968)
79 COG1413 FOG: HEAT repeat [Ener 98.2 0.00026 5.7E-09 71.4 21.2 186 178-426 43-241 (335)
80 KOG0212 Uncharacterized conser 98.2 0.00058 1.3E-08 69.8 22.9 306 137-480 167-481 (675)
81 KOG1242 Protein containing ada 98.1 0.0019 4.2E-08 67.1 26.3 298 102-427 142-444 (569)
82 KOG0212 Uncharacterized conser 98.1 0.00014 3.1E-09 74.0 17.7 381 104-520 53-461 (675)
83 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00091 2E-08 67.7 22.9 239 264-526 24-272 (371)
84 PF13513 HEAT_EZ: HEAT-like re 98.1 7.9E-06 1.7E-10 58.5 5.5 55 370-425 1-55 (55)
85 PF05536 Neurochondrin: Neuroc 98.1 0.0003 6.6E-09 74.9 19.6 233 180-427 7-261 (543)
86 KOG1060 Vesicle coat complex A 98.1 0.0041 9E-08 66.1 27.0 287 94-427 38-350 (968)
87 KOG1077 Vesicle coat complex A 98.1 0.012 2.6E-07 61.9 29.8 301 182-523 115-437 (938)
88 KOG2973 Uncharacterized conser 98.1 0.0016 3.5E-08 62.0 21.6 294 181-523 6-315 (353)
89 COG1413 FOG: HEAT repeat [Ener 98.0 0.0021 4.5E-08 64.8 24.4 249 92-427 44-304 (335)
90 PF05536 Neurochondrin: Neuroc 98.0 0.00033 7.2E-09 74.6 19.1 241 92-337 6-261 (543)
91 KOG4413 26S proteasome regulat 98.0 0.0081 1.8E-07 57.7 25.4 315 101-429 89-441 (524)
92 KOG4646 Uncharacterized conser 98.0 2.6E-05 5.6E-10 64.8 7.7 131 180-314 18-148 (173)
93 KOG1789 Endocytosis protein RM 98.0 0.0023 5.1E-08 69.7 23.6 328 109-462 1740-2142(2235)
94 KOG1242 Protein containing ada 98.0 0.0024 5.3E-08 66.4 23.1 342 97-481 99-446 (569)
95 KOG1058 Vesicle coat complex C 98.0 0.0018 3.9E-08 68.4 22.0 148 356-526 317-466 (948)
96 PF13646 HEAT_2: HEAT repeats; 97.9 2.9E-05 6.3E-10 61.5 6.8 87 309-423 1-88 (88)
97 KOG1789 Endocytosis protein RM 97.9 0.0042 9.1E-08 67.8 24.4 327 158-503 1745-2139(2235)
98 KOG4413 26S proteasome regulat 97.9 0.0025 5.5E-08 61.1 19.9 305 96-406 130-460 (524)
99 KOG0567 HEAT repeat-containing 97.9 0.0012 2.7E-08 61.5 17.3 245 105-426 16-279 (289)
100 KOG4646 Uncharacterized conser 97.8 0.00056 1.2E-08 57.1 12.7 154 356-523 16-170 (173)
101 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0019 4.2E-08 65.4 19.4 309 105-426 36-363 (371)
102 KOG1824 TATA-binding protein-i 97.8 0.017 3.6E-07 62.9 26.7 344 93-483 695-1099(1233)
103 KOG1240 Protein kinase contain 97.8 0.00059 1.3E-08 75.3 16.1 299 138-481 423-727 (1431)
104 KOG1824 TATA-binding protein-i 97.8 0.002 4.4E-08 69.6 19.6 349 98-481 9-404 (1233)
105 PF13513 HEAT_EZ: HEAT-like re 97.8 4.4E-05 9.6E-10 54.6 4.9 53 153-206 2-55 (55)
106 KOG1061 Vesicle coat complex A 97.8 0.0025 5.4E-08 67.8 19.5 299 136-482 12-311 (734)
107 PF13646 HEAT_2: HEAT repeats; 97.8 7.4E-05 1.6E-09 59.1 6.5 87 223-333 1-88 (88)
108 PF12348 CLASP_N: CLASP N term 97.7 0.00078 1.7E-08 63.8 13.9 189 104-299 17-211 (228)
109 KOG2259 Uncharacterized conser 97.7 0.0019 4E-08 67.4 17.0 191 223-428 236-440 (823)
110 smart00185 ARM Armadillo/beta- 97.7 0.0001 2.2E-09 48.9 5.4 38 389-426 3-40 (41)
111 KOG1240 Protein kinase contain 97.7 0.00096 2.1E-08 73.8 15.4 269 93-386 424-726 (1431)
112 PF12348 CLASP_N: CLASP N term 97.7 0.00033 7.1E-09 66.5 10.6 183 318-522 17-205 (228)
113 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.003 6.6E-08 60.3 16.2 231 192-426 162-427 (432)
114 KOG1077 Vesicle coat complex A 97.6 0.084 1.8E-06 55.9 27.5 268 136-427 186-488 (938)
115 smart00185 ARM Armadillo/beta- 97.6 0.00011 2.5E-09 48.7 4.7 39 212-250 3-41 (41)
116 COG5181 HSH155 U2 snRNP splice 97.6 0.001 2.2E-08 68.6 13.4 221 224-479 607-829 (975)
117 KOG1991 Nuclear transport rece 97.6 0.063 1.4E-06 59.0 27.4 281 136-428 409-712 (1010)
118 KOG0567 HEAT repeat-containing 97.5 0.0094 2E-07 55.8 17.6 254 140-476 6-277 (289)
119 PF12460 MMS19_C: RNAPII trans 97.5 0.015 3.3E-07 60.4 21.4 318 139-480 1-395 (415)
120 KOG2734 Uncharacterized conser 97.3 0.043 9.4E-07 55.0 20.2 246 263-526 123-403 (536)
121 PF09759 Atx10homo_assoc: Spin 97.3 0.00078 1.7E-08 54.2 6.5 58 195-252 2-61 (102)
122 PF08569 Mo25: Mo25-like; Int 97.3 0.025 5.5E-07 56.3 18.4 210 213-429 68-285 (335)
123 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0024 5.1E-08 51.4 9.0 95 372-479 2-96 (97)
124 PF10165 Ric8: Guanine nucleot 97.3 0.037 7.9E-07 57.9 20.3 268 115-387 2-339 (446)
125 COG5096 Vesicle coat complex, 97.2 0.0099 2.1E-07 64.5 16.2 167 230-427 28-195 (757)
126 PF10165 Ric8: Guanine nucleot 97.2 0.093 2E-06 54.9 22.8 234 190-427 43-337 (446)
127 KOG1943 Beta-tubulin folding c 97.2 0.11 2.4E-06 57.6 23.2 322 89-427 335-705 (1133)
128 KOG2259 Uncharacterized conser 97.1 0.029 6.4E-07 58.8 17.3 220 226-480 203-440 (823)
129 COG5231 VMA13 Vacuolar H+-ATPa 97.1 0.036 7.8E-07 53.2 16.5 220 156-385 167-428 (432)
130 KOG0915 Uncharacterized conser 97.1 0.15 3.3E-06 58.5 23.6 302 158-482 977-1309(1702)
131 KOG0211 Protein phosphatase 2A 97.1 0.11 2.4E-06 57.0 22.3 376 105-521 248-623 (759)
132 COG5240 SEC21 Vesicle coat com 97.0 0.6 1.3E-05 48.6 26.5 287 179-521 265-553 (898)
133 KOG1991 Nuclear transport rece 96.9 0.92 2E-05 50.3 29.8 308 129-458 454-822 (1010)
134 KOG1943 Beta-tubulin folding c 96.9 0.38 8.3E-06 53.6 24.6 147 178-336 341-499 (1133)
135 PF05004 IFRD: Interferon-rela 96.9 0.055 1.2E-06 53.6 16.5 194 94-294 43-257 (309)
136 PF12460 MMS19_C: RNAPII trans 96.8 0.8 1.7E-05 47.6 29.2 298 107-428 56-395 (415)
137 COG5240 SEC21 Vesicle coat com 96.7 0.07 1.5E-06 55.2 16.1 129 152-293 278-406 (898)
138 KOG0211 Protein phosphatase 2A 96.7 0.26 5.7E-06 54.2 21.6 364 105-513 287-654 (759)
139 PF12717 Cnd1: non-SMC mitotic 96.7 0.034 7.4E-07 50.4 12.8 92 192-295 1-93 (178)
140 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.0072 1.6E-07 48.6 7.2 91 326-425 4-94 (97)
141 KOG4535 HEAT and armadillo rep 96.7 0.0013 2.9E-08 66.0 3.4 160 264-427 432-603 (728)
142 KOG4535 HEAT and armadillo rep 96.5 0.038 8.2E-07 55.9 12.3 184 193-385 405-603 (728)
143 KOG2274 Predicted importin 9 [ 96.4 0.25 5.4E-06 53.9 18.5 228 185-428 456-690 (1005)
144 PF09759 Atx10homo_assoc: Spin 96.4 0.013 2.8E-07 47.3 6.9 58 372-429 2-61 (102)
145 KOG1248 Uncharacterized conser 96.4 1.5 3.2E-05 49.7 24.6 231 232-481 665-900 (1176)
146 COG5656 SXM1 Importin, protein 96.3 1.5 3.3E-05 47.2 23.1 291 136-483 407-715 (970)
147 KOG2274 Predicted importin 9 [ 96.3 0.32 6.9E-06 53.2 18.3 274 143-427 496-780 (1005)
148 KOG2062 26S proteasome regulat 96.3 0.17 3.7E-06 54.0 16.0 157 224-413 522-680 (929)
149 KOG1967 DNA repair/transcripti 96.2 0.026 5.7E-07 61.3 9.9 149 264-422 866-1019(1030)
150 PF11698 V-ATPase_H_C: V-ATPas 96.2 0.013 2.9E-07 48.5 6.0 72 355-426 42-114 (119)
151 PF11864 DUF3384: Domain of un 96.2 2.1 4.5E-05 45.2 28.2 283 108-426 4-329 (464)
152 KOG1078 Vesicle coat complex C 96.1 0.31 6.7E-06 52.5 17.1 65 357-426 467-531 (865)
153 PF13764 E3_UbLigase_R4: E3 ub 96.1 0.83 1.8E-05 50.8 21.0 249 263-523 115-406 (802)
154 PRK14707 hypothetical protein; 96.0 5.2 0.00011 48.3 28.5 385 105-516 133-522 (2710)
155 PF12717 Cnd1: non-SMC mitotic 96.0 0.11 2.5E-06 47.0 12.0 92 369-480 1-93 (178)
156 KOG0915 Uncharacterized conser 96.0 1 2.2E-05 52.2 21.3 292 96-409 1041-1366(1702)
157 PF11841 DUF3361: Domain of un 96.0 0.28 6.1E-06 42.9 13.6 122 301-429 5-133 (160)
158 PF11698 V-ATPase_H_C: V-ATPas 95.9 0.019 4.1E-07 47.5 5.8 71 450-522 43-114 (119)
159 KOG1967 DNA repair/transcripti 95.9 0.051 1.1E-06 59.2 10.5 187 180-382 817-1021(1030)
160 PF05004 IFRD: Interferon-rela 95.7 0.54 1.2E-05 46.6 16.2 188 226-426 48-256 (309)
161 PRK14707 hypothetical protein; 95.7 7.2 0.00016 47.2 28.7 390 106-522 176-570 (2710)
162 KOG0414 Chromosome condensatio 95.7 0.078 1.7E-06 59.3 10.9 159 137-316 919-1080(1251)
163 KOG1058 Vesicle coat complex C 95.7 0.71 1.5E-05 49.6 17.2 253 94-388 206-466 (948)
164 PF08045 CDC14: Cell division 95.6 0.16 3.5E-06 48.2 11.6 101 415-527 108-211 (257)
165 KOG2611 Neurochondrin/leucine- 95.6 0.98 2.1E-05 46.1 17.3 224 105-336 22-273 (698)
166 PF05918 API5: Apoptosis inhib 95.6 1.5 3.3E-05 46.5 19.7 120 152-290 36-158 (556)
167 PF02985 HEAT: HEAT repeat; I 95.6 0.02 4.4E-07 35.3 3.7 29 357-385 1-29 (31)
168 PF02985 HEAT: HEAT repeat; I 95.6 0.018 3.8E-07 35.5 3.3 28 180-208 2-29 (31)
169 COG5116 RPN2 26S proteasome re 95.6 0.19 4.1E-06 52.1 12.3 152 226-410 521-674 (926)
170 PF11841 DUF3361: Domain of un 95.6 0.28 6E-06 43.0 11.8 123 130-252 4-133 (160)
171 KOG1248 Uncharacterized conser 95.5 2.2 4.8E-05 48.4 21.3 240 143-396 659-910 (1176)
172 PF11701 UNC45-central: Myosin 95.5 0.11 2.4E-06 46.0 9.4 145 309-475 5-155 (157)
173 KOG4151 Myosin assembly protei 95.5 0.19 4.1E-06 54.2 12.6 218 196-427 478-699 (748)
174 PF06025 DUF913: Domain of Unk 95.4 1.6 3.4E-05 44.6 18.5 154 236-396 75-243 (379)
175 PF14668 RICTOR_V: Rapamycin-i 95.1 0.081 1.8E-06 39.8 6.2 64 156-221 5-70 (73)
176 KOG1078 Vesicle coat complex C 95.1 6.3 0.00014 43.0 26.0 284 179-521 246-530 (865)
177 KOG2956 CLIP-associating prote 95.1 0.99 2.2E-05 46.0 15.5 186 94-294 286-477 (516)
178 KOG4653 Uncharacterized conser 95.1 1 2.2E-05 49.3 16.4 181 229-428 735-919 (982)
179 KOG2611 Neurochondrin/leucine- 94.9 1.9 4.2E-05 44.1 17.0 192 182-386 15-226 (698)
180 KOG1243 Protein kinase [Genera 94.9 0.77 1.7E-05 49.1 14.9 257 96-383 256-513 (690)
181 PF06371 Drf_GBD: Diaphanous G 94.9 0.33 7.1E-06 44.2 11.2 93 113-207 83-186 (187)
182 PF08569 Mo25: Mo25-like; Int 94.8 3.2 7E-05 41.5 18.5 204 131-339 70-285 (335)
183 KOG1820 Microtubule-associated 94.8 0.59 1.3E-05 52.0 14.4 181 102-294 261-443 (815)
184 KOG4151 Myosin assembly protei 94.8 0.29 6.2E-06 52.9 11.5 201 106-314 516-719 (748)
185 KOG2734 Uncharacterized conser 94.7 5.6 0.00012 40.4 24.0 262 203-481 108-402 (536)
186 PF12719 Cnd3: Nuclear condens 94.7 0.43 9.3E-06 47.2 11.9 113 356-482 26-146 (298)
187 PF07814 WAPL: Wings apart-lik 94.6 1.3 2.7E-05 45.1 15.5 244 179-429 22-357 (361)
188 KOG3036 Protein involved in ce 94.5 2.5 5.5E-05 39.6 15.3 140 282-428 96-248 (293)
189 KOG1949 Uncharacterized conser 94.5 2.6 5.7E-05 45.2 17.2 223 225-463 178-405 (1005)
190 COG5116 RPN2 26S proteasome re 94.4 0.47 1E-05 49.3 11.4 128 136-280 550-677 (926)
191 KOG2062 26S proteasome regulat 94.4 0.16 3.5E-06 54.2 8.3 130 138-284 555-684 (929)
192 PF14668 RICTOR_V: Rapamycin-i 94.3 0.31 6.7E-06 36.7 7.6 55 373-428 4-59 (73)
193 PF13764 E3_UbLigase_R4: E3 ub 93.9 7.8 0.00017 43.3 20.6 207 179-409 85-330 (802)
194 PF11707 Npa1: Ribosome 60S bi 93.9 7.7 0.00017 38.9 21.1 159 357-524 57-238 (330)
195 KOG2025 Chromosome condensatio 93.9 7.8 0.00017 41.8 19.3 107 219-334 83-190 (892)
196 KOG4653 Uncharacterized conser 93.9 1 2.2E-05 49.3 13.1 221 184-425 733-962 (982)
197 KOG3665 ZYG-1-like serine/thre 93.8 4.3 9.3E-05 45.0 18.4 197 288-522 494-696 (699)
198 smart00638 LPD_N Lipoprotein N 93.8 1.3 2.9E-05 48.2 14.6 136 265-425 393-543 (574)
199 PF05918 API5: Apoptosis inhib 93.8 1.5 3.3E-05 46.5 14.2 126 320-479 34-162 (556)
200 PF04078 Rcd1: Cell differenti 93.7 3.3 7.1E-05 39.4 14.9 183 278-478 8-217 (262)
201 KOG0414 Chromosome condensatio 93.7 0.78 1.7E-05 51.8 12.2 142 265-427 919-1064(1251)
202 PF04078 Rcd1: Cell differenti 93.5 2.7 5.9E-05 39.9 14.0 139 282-429 67-220 (262)
203 PF01347 Vitellogenin_N: Lipop 93.4 0.38 8.2E-06 52.9 9.7 169 223-424 397-586 (618)
204 PF08045 CDC14: Cell division 93.4 3.7 8E-05 39.2 14.8 94 156-249 109-206 (257)
205 KOG3036 Protein involved in ce 93.4 2.2 4.8E-05 39.9 12.7 113 104-219 135-257 (293)
206 PF11701 UNC45-central: Myosin 93.0 0.27 5.7E-06 43.5 6.3 148 180-334 5-156 (157)
207 PF13251 DUF4042: Domain of un 92.9 1.6 3.4E-05 39.5 11.1 145 237-386 2-175 (182)
208 PF14500 MMS19_N: Dos2-interac 92.7 9.2 0.0002 36.9 16.8 218 183-427 4-237 (262)
209 KOG2032 Uncharacterized conser 92.7 14 0.0003 38.3 18.3 262 99-384 263-530 (533)
210 KOG2956 CLIP-associating prote 92.6 3.8 8.3E-05 41.9 14.3 168 155-336 304-476 (516)
211 KOG1566 Conserved protein Mo25 92.6 11 0.00023 36.8 17.5 211 214-429 72-288 (342)
212 COG5098 Chromosome condensatio 92.5 0.6 1.3E-05 49.7 8.8 132 150-296 908-1039(1128)
213 KOG1020 Sister chromatid cohes 92.5 1.9 4.1E-05 50.1 13.2 130 281-428 793-922 (1692)
214 PF11707 Npa1: Ribosome 60S bi 92.5 12 0.00027 37.4 18.2 160 309-479 58-237 (330)
215 PF12719 Cnd3: Nuclear condens 92.4 3 6.6E-05 41.1 13.5 170 222-410 27-209 (298)
216 KOG2137 Protein kinase [Signal 92.4 1.5 3.3E-05 47.1 11.7 200 196-412 290-522 (700)
217 PF06025 DUF913: Domain of Unk 92.4 4.4 9.6E-05 41.4 14.8 122 326-463 78-209 (379)
218 KOG2032 Uncharacterized conser 92.3 13 0.00028 38.5 17.6 138 191-337 270-415 (533)
219 PF11864 DUF3384: Domain of un 92.0 16 0.00035 38.5 19.2 172 281-478 150-329 (464)
220 PF04063 DUF383: Domain of unk 92.0 1.2 2.5E-05 40.8 9.2 125 277-408 7-157 (192)
221 KOG2999 Regulator of Rac1, req 91.0 12 0.00026 39.3 15.9 153 268-428 86-243 (713)
222 KOG1243 Protein kinase [Genera 91.0 1.4 3.1E-05 47.2 9.7 187 218-425 327-513 (690)
223 COG5098 Chromosome condensatio 90.3 1.5 3.3E-05 46.8 9.1 141 267-428 894-1038(1128)
224 PF11865 DUF3385: Domain of un 90.3 4.1 8.8E-05 36.1 10.7 146 137-293 10-156 (160)
225 KOG1020 Sister chromatid cohes 89.7 51 0.0011 39.2 27.9 108 97-214 819-927 (1692)
226 PF01347 Vitellogenin_N: Lipop 89.3 0.87 1.9E-05 50.0 7.0 171 138-334 396-586 (618)
227 PF04063 DUF383: Domain of unk 89.2 4.2 9.1E-05 37.2 10.2 103 324-428 11-133 (192)
228 KOG3665 ZYG-1-like serine/thre 88.9 7.1 0.00015 43.3 13.5 195 202-425 494-695 (699)
229 PF10363 DUF2435: Protein of u 88.8 2.3 5E-05 33.7 7.2 81 224-316 6-86 (92)
230 KOG1832 HIV-1 Vpr-binding prot 88.6 5.4 0.00012 44.0 11.8 61 369-429 675-775 (1516)
231 PF01603 B56: Protein phosphat 88.3 10 0.00022 39.3 13.6 258 116-393 112-378 (409)
232 smart00638 LPD_N Lipoprotein N 88.3 3.1 6.8E-05 45.3 10.4 133 179-333 394-541 (574)
233 KOG2933 Uncharacterized conser 88.1 2.3 5E-05 41.2 7.9 143 265-427 88-234 (334)
234 PLN03076 ARF guanine nucleotid 87.9 79 0.0017 39.1 22.1 207 191-408 1149-1403(1780)
235 KOG1992 Nuclear export recepto 86.9 33 0.00072 37.9 16.3 293 154-461 378-706 (960)
236 PF10363 DUF2435: Protein of u 86.4 2.2 4.7E-05 33.9 5.7 82 182-276 7-88 (92)
237 PF06371 Drf_GBD: Diaphanous G 86.0 11 0.00023 34.1 11.1 82 386-478 95-186 (187)
238 COG5656 SXM1 Importin, protein 85.9 60 0.0013 35.7 20.5 114 264-387 407-530 (970)
239 KOG1820 Microtubule-associated 85.3 9.7 0.00021 42.7 12.0 193 266-482 254-446 (815)
240 KOG1949 Uncharacterized conser 85.2 18 0.0004 39.1 13.2 192 311-528 178-376 (1005)
241 KOG2933 Uncharacterized conser 85.1 2.7 5.8E-05 40.8 6.6 139 226-385 93-234 (334)
242 KOG2137 Protein kinase [Signal 84.9 32 0.0007 37.4 15.1 183 263-479 310-496 (700)
243 PF12830 Nipped-B_C: Sister ch 84.5 18 0.00039 32.9 11.7 74 222-302 9-82 (187)
244 PF12031 DUF3518: Domain of un 84.2 2 4.3E-05 40.2 5.2 79 154-233 140-228 (257)
245 KOG2999 Regulator of Rac1, req 84.1 16 0.00035 38.4 11.9 158 356-527 83-246 (713)
246 PF08506 Cse1: Cse1; InterPro 83.7 47 0.001 33.8 15.4 146 303-473 206-369 (370)
247 KOG1525 Sister chromatid cohes 83.6 1E+02 0.0022 36.7 19.4 148 306-479 258-405 (1266)
248 PF08167 RIX1: rRNA processing 83.3 11 0.00024 33.5 9.6 117 356-483 25-147 (165)
249 PF12031 DUF3518: Domain of un 83.2 1.2 2.7E-05 41.5 3.4 85 280-370 139-230 (257)
250 cd03572 ENTH_epsin_related ENT 83.1 2.9 6.3E-05 35.0 5.3 74 451-525 39-121 (122)
251 KOG2025 Chromosome condensatio 82.5 12 0.00026 40.5 10.6 129 235-381 60-189 (892)
252 PF12530 DUF3730: Protein of u 81.6 48 0.001 31.3 16.1 139 139-294 2-151 (234)
253 cd03568 VHS_STAM VHS domain fa 81.1 6.6 0.00014 34.1 7.1 70 451-521 38-108 (144)
254 PF13251 DUF4042: Domain of un 80.5 17 0.00036 32.9 9.6 112 360-480 44-175 (182)
255 KOG1822 Uncharacterized conser 80.3 1.2E+02 0.0025 37.2 18.2 281 180-479 878-1189(2067)
256 cd03569 VHS_Hrs_Vps27p VHS dom 80.1 7.7 0.00017 33.6 7.1 70 451-521 42-112 (142)
257 KOG1832 HIV-1 Vpr-binding prot 79.6 4.5 9.8E-05 44.6 6.5 180 196-396 569-783 (1516)
258 cd03561 VHS VHS domain family; 79.6 9.6 0.00021 32.5 7.5 70 451-521 38-110 (133)
259 PF08324 PUL: PUL domain; Int 78.9 20 0.00043 34.6 10.5 107 191-301 122-238 (268)
260 COG5209 RCD1 Uncharacterized p 78.0 16 0.00034 33.9 8.5 138 283-427 118-268 (315)
261 COG5218 YCG1 Chromosome conden 77.4 74 0.0016 34.0 14.1 108 169-285 82-190 (885)
262 PF08167 RIX1: rRNA processing 77.2 20 0.00042 31.9 9.1 117 263-386 23-144 (165)
263 PF08506 Cse1: Cse1; InterPro 76.9 27 0.00059 35.6 11.1 129 154-289 227-370 (370)
264 PF12074 DUF3554: Domain of un 76.6 41 0.0009 33.7 12.4 231 158-409 7-255 (339)
265 PF10274 ParcG: Parkin co-regu 76.4 51 0.0011 29.8 11.3 72 356-428 38-110 (183)
266 cd03567 VHS_GGA VHS domain fam 76.3 12 0.00026 32.2 7.2 70 451-521 39-114 (139)
267 PF06685 DUF1186: Protein of u 75.2 74 0.0016 30.4 12.7 163 264-456 30-203 (249)
268 cd00197 VHS_ENTH_ANTH VHS, ENT 74.0 14 0.00031 30.4 6.9 71 451-522 38-114 (115)
269 cd03568 VHS_STAM VHS domain fa 73.3 41 0.00089 29.1 9.8 72 399-479 38-110 (144)
270 PF12530 DUF3730: Protein of u 73.3 84 0.0018 29.7 17.5 137 268-427 3-151 (234)
271 PF11865 DUF3385: Domain of un 73.1 24 0.00053 31.2 8.5 114 264-384 9-156 (160)
272 COG5218 YCG1 Chromosome conden 72.1 21 0.00046 37.8 8.7 71 356-427 91-161 (885)
273 KOG4464 Signaling protein RIC- 71.5 61 0.0013 33.0 11.4 157 267-430 47-234 (532)
274 cd03561 VHS VHS domain family; 71.0 64 0.0014 27.4 10.7 72 356-427 37-112 (133)
275 PF14225 MOR2-PAG1_C: Cell mor 70.9 1E+02 0.0022 29.7 17.1 178 136-339 63-256 (262)
276 PF10521 DUF2454: Protein of u 70.8 17 0.00038 35.4 7.8 71 222-293 120-202 (282)
277 KOG1566 Conserved protein Mo25 70.7 1.1E+02 0.0024 30.0 16.1 200 301-520 73-283 (342)
278 PF04388 Hamartin: Hamartin pr 70.5 70 0.0015 35.5 13.1 134 92-249 5-139 (668)
279 PF06685 DUF1186: Protein of u 70.5 29 0.00063 33.1 8.8 73 263-347 71-152 (249)
280 PF12054 DUF3535: Domain of un 70.1 1.4E+02 0.0031 31.2 14.7 108 109-222 102-211 (441)
281 PF10521 DUF2454: Protein of u 69.9 39 0.00084 33.0 10.0 122 356-479 119-253 (282)
282 COG5209 RCD1 Uncharacterized p 69.2 24 0.00052 32.7 7.5 137 197-336 118-267 (315)
283 cd03569 VHS_Hrs_Vps27p VHS dom 67.7 36 0.00079 29.4 8.2 72 399-479 42-114 (142)
284 smart00288 VHS Domain present 67.5 19 0.00041 30.7 6.4 70 451-521 38-109 (133)
285 PF12231 Rif1_N: Rap1-interact 67.3 1.5E+02 0.0033 30.2 22.4 263 235-519 7-299 (372)
286 PF04821 TIMELESS: Timeless pr 66.9 1.3E+02 0.0027 29.2 12.8 70 412-481 134-210 (266)
287 KOG2549 Transcription initiati 66.8 88 0.0019 33.1 11.9 147 88-249 204-369 (576)
288 PF06012 DUF908: Domain of Unk 66.0 14 0.00031 36.9 6.2 83 281-364 238-324 (329)
289 cd08050 TAF6 TATA Binding Prot 65.6 43 0.00092 33.8 9.5 106 89-208 176-297 (343)
290 PLN03076 ARF guanine nucleotid 65.4 2.4E+02 0.0051 35.2 16.8 268 105-386 1148-1490(1780)
291 PF04821 TIMELESS: Timeless pr 65.3 1.2E+02 0.0026 29.3 12.2 157 356-524 13-209 (266)
292 KOG0891 DNA-dependent protein 65.3 2E+02 0.0043 36.7 16.3 188 191-387 577-765 (2341)
293 PF14726 RTTN_N: Rotatin, an a 64.8 23 0.00049 28.5 5.8 70 448-520 28-97 (98)
294 PF01417 ENTH: ENTH domain; I 64.4 5.9 0.00013 33.4 2.6 73 451-524 40-122 (125)
295 PF08711 Med26: TFIIS helical 64.3 17 0.00036 25.3 4.5 36 486-521 12-48 (53)
296 PF13001 Ecm29: Proteasome sta 64.3 1.3E+02 0.0029 32.1 13.4 159 357-527 320-492 (501)
297 KOG1822 Uncharacterized conser 64.2 3.6E+02 0.0078 33.4 19.5 307 193-518 798-1141(2067)
298 PF12726 SEN1_N: SEN1 N termin 63.4 2.6E+02 0.0056 31.5 27.8 110 400-525 443-555 (727)
299 PF12830 Nipped-B_C: Sister ch 63.3 1.2E+02 0.0025 27.5 13.6 147 90-251 7-168 (187)
300 PF12231 Rif1_N: Rap1-interact 63.1 1.8E+02 0.0039 29.6 22.1 303 105-427 4-352 (372)
301 KOG0413 Uncharacterized conser 62.5 31 0.00067 38.9 8.0 123 157-295 950-1074(1529)
302 smart00509 TFS2N Domain in the 61.1 35 0.00075 25.8 6.0 36 486-521 34-69 (75)
303 PF01603 B56: Protein phosphat 60.6 1.9E+02 0.0041 29.9 13.4 226 96-339 135-372 (409)
304 PF07814 WAPL: Wings apart-lik 60.5 2E+02 0.0043 29.2 17.3 93 93-188 20-116 (361)
305 PF11229 DUF3028: Protein of u 60.3 2.3E+02 0.005 30.0 15.5 195 264-479 96-306 (589)
306 KOG2038 CAATT-binding transcri 59.8 41 0.00089 36.9 8.2 67 356-427 304-370 (988)
307 PF00790 VHS: VHS domain; Int 59.6 24 0.00052 30.4 5.6 70 451-521 43-116 (140)
308 PF04869 Uso1_p115_head: Uso1 59.2 1.9E+02 0.0042 28.7 13.8 123 192-316 51-208 (312)
309 PF03130 HEAT_PBS: PBS lyase H 58.8 8.5 0.00019 22.6 1.9 14 372-385 1-14 (27)
310 cd00183 TFIIS_I N-terminal dom 58.7 51 0.0011 25.0 6.6 36 486-521 36-71 (76)
311 KOG2005 26S proteasome regulat 58.6 2.4E+02 0.0052 30.9 13.4 64 357-427 641-704 (878)
312 KOG1848 Uncharacterized conser 58.4 1.7E+02 0.0036 34.8 13.0 51 465-520 1071-1129(1610)
313 PF08324 PUL: PUL domain; Int 58.2 66 0.0014 30.9 9.2 179 322-517 77-268 (268)
314 cd03567 VHS_GGA VHS domain fam 58.1 86 0.0019 27.0 8.7 71 399-478 39-115 (139)
315 PF04388 Hamartin: Hamartin pr 57.8 1.3E+02 0.0029 33.4 12.2 136 265-427 4-140 (668)
316 smart00567 EZ_HEAT E-Z type HE 56.2 15 0.00033 21.9 2.8 28 371-409 2-29 (30)
317 PF14500 MMS19_N: Dos2-interac 56.0 2E+02 0.0042 27.8 15.6 197 271-479 5-237 (262)
318 PF12726 SEN1_N: SEN1 N termin 55.7 2.7E+02 0.0059 31.3 14.6 145 136-294 440-585 (727)
319 PF04499 SAPS: SIT4 phosphatas 53.7 72 0.0016 33.7 9.0 90 388-480 52-149 (475)
320 KOG0413 Uncharacterized conser 53.1 47 0.001 37.5 7.5 128 193-339 945-1075(1529)
321 PF12054 DUF3535: Domain of un 52.9 3E+02 0.0064 28.9 13.7 110 194-309 102-212 (441)
322 KOG1992 Nuclear export recepto 52.4 3.9E+02 0.0084 30.1 23.0 62 104-166 371-434 (960)
323 PF11791 Aconitase_B_N: Aconit 52.1 45 0.00098 28.9 5.8 44 373-427 80-123 (154)
324 smart00288 VHS Domain present 51.9 65 0.0014 27.4 7.0 66 101-166 44-110 (133)
325 cd03572 ENTH_epsin_related ENT 51.4 1.2E+02 0.0027 25.4 8.3 44 380-428 25-68 (122)
326 PF14225 MOR2-PAG1_C: Cell mor 51.4 2.3E+02 0.0051 27.3 17.5 166 321-521 75-252 (262)
327 PF12783 Sec7_N: Guanine nucle 50.8 1.8E+02 0.0038 25.7 10.3 91 129-220 65-158 (168)
328 PF10274 ParcG: Parkin co-regu 50.7 1.4E+02 0.003 27.0 9.0 76 263-340 36-112 (183)
329 KOG4464 Signaling protein RIC- 50.3 2.5E+02 0.0054 28.9 11.4 143 236-387 61-233 (532)
330 KOG2152 Sister chromatid cohes 49.4 4.1E+02 0.0089 29.5 18.1 41 210-250 364-405 (865)
331 KOG0301 Phospholipase A2-activ 48.9 3.7E+02 0.008 29.4 13.0 146 192-346 557-713 (745)
332 PF07923 N1221: N1221-like pro 48.9 44 0.00094 32.9 6.2 64 398-461 60-127 (293)
333 PF12463 DUF3689: Protein of u 47.9 2.2E+02 0.0047 28.1 10.7 109 281-394 48-182 (303)
334 KOG1525 Sister chromatid cohes 45.8 6.1E+02 0.013 30.5 22.4 72 356-428 259-330 (1266)
335 KOG1988 Uncharacterized conser 45.5 5E+02 0.011 29.4 14.4 244 102-385 32-281 (970)
336 cd03565 VHS_Tom1 VHS domain fa 44.8 99 0.0021 26.6 7.0 69 452-521 40-113 (141)
337 KOG1788 Uncharacterized conser 44.3 5.9E+02 0.013 29.8 18.5 343 133-504 462-960 (2799)
338 PF08216 CTNNBL: Catenin-beta- 44.1 47 0.001 27.1 4.5 44 282-327 63-106 (108)
339 PF09324 DUF1981: Domain of un 43.8 34 0.00074 26.6 3.7 70 305-381 15-84 (86)
340 PF07923 N1221: N1221-like pro 42.9 51 0.0011 32.4 5.6 55 263-317 58-126 (293)
341 KOG2149 Uncharacterized conser 42.7 1.9E+02 0.0042 29.4 9.5 116 357-483 59-174 (393)
342 PF03378 CAS_CSE1: CAS/CSE pro 41.2 4.4E+02 0.0096 27.6 14.7 117 89-207 24-145 (435)
343 PF04499 SAPS: SIT4 phosphatas 40.9 1.3E+02 0.0028 31.8 8.5 73 178-250 62-148 (475)
344 cd03571 ENTH_epsin ENTH domain 40.7 63 0.0014 27.1 5.0 71 451-521 38-116 (123)
345 KOG1993 Nuclear transport rece 40.3 5.9E+02 0.013 28.7 19.9 311 93-427 528-864 (978)
346 KOG1410 Nuclear transport rece 39.8 5.6E+02 0.012 28.3 23.2 297 94-426 8-333 (1082)
347 cd01882 BMS1 Bms1. Bms1 is an 39.1 12 0.00025 35.2 0.5 28 32-59 6-33 (225)
348 PF06743 FAST_1: FAST kinase-l 38.9 1E+02 0.0023 22.9 5.5 66 240-309 3-68 (71)
349 PF09758 FPL: Uncharacterised 37.8 1.9E+02 0.0042 25.1 7.6 125 256-384 17-148 (149)
350 PF08767 CRM1_C: CRM1 C termin 37.7 3.5E+02 0.0076 26.9 10.7 178 323-522 42-243 (319)
351 PF08216 CTNNBL: Catenin-beta- 37.5 44 0.00096 27.3 3.4 42 374-416 64-105 (108)
352 PF14663 RasGEF_N_2: Rapamycin 37.5 2.3E+02 0.0051 23.3 8.8 102 399-524 9-111 (115)
353 KOG1993 Nuclear transport rece 36.5 6.7E+02 0.015 28.3 22.6 318 130-478 481-811 (978)
354 PF12765 Cohesin_HEAT: HEAT re 35.5 56 0.0012 21.5 3.1 24 356-379 18-41 (42)
355 PF12074 DUF3554: Domain of un 35.0 4.7E+02 0.01 26.1 15.5 219 283-526 5-238 (339)
356 PF08713 DNA_alkylation: DNA a 34.7 81 0.0018 28.9 5.4 76 308-397 121-196 (213)
357 PF12243 CTK3: CTD kinase subu 34.3 2.8E+02 0.006 23.9 8.0 58 361-428 13-70 (139)
358 KOG0891 DNA-dependent protein 34.0 7.8E+02 0.017 31.8 14.5 254 196-479 461-719 (2341)
359 PF08713 DNA_alkylation: DNA a 33.8 95 0.0021 28.5 5.7 109 180-306 87-196 (213)
360 KOG1087 Cytosolic sorting prot 33.7 90 0.0019 32.8 5.9 70 451-521 39-110 (470)
361 PF00790 VHS: VHS domain; Int 33.1 3.1E+02 0.0067 23.4 10.0 71 356-426 42-117 (140)
362 PF09324 DUF1981: Domain of un 32.9 1.1E+02 0.0023 23.9 4.9 67 447-520 14-85 (86)
363 cd08050 TAF6 TATA Binding Prot 32.2 3.8E+02 0.0083 27.0 10.1 110 179-292 211-338 (343)
364 PF12397 U3snoRNP10: U3 small 32.2 1.2E+02 0.0025 25.2 5.5 69 264-338 5-75 (121)
365 TIGR01404 FlhB_rel_III type II 32.1 39 0.00086 34.0 2.9 33 13-46 211-244 (342)
366 PF03378 CAS_CSE1: CAS/CSE pro 30.6 6.5E+02 0.014 26.3 14.9 69 182-250 75-146 (435)
367 KOG2056 Equilibrative nucleosi 30.2 1.1E+02 0.0024 30.5 5.5 67 453-519 60-134 (336)
368 PF08389 Xpo1: Exportin 1-like 29.9 1.1E+02 0.0024 25.9 5.1 63 356-422 82-148 (148)
369 PF14726 RTTN_N: Rotatin, an a 29.9 2.9E+02 0.0064 22.1 8.9 64 355-419 29-92 (98)
370 PF12463 DUF3689: Protein of u 29.5 4.2E+02 0.0091 26.2 9.4 80 220-299 94-178 (303)
371 PF04869 Uso1_p115_head: Uso1 29.3 5.8E+02 0.012 25.3 11.3 123 152-275 52-209 (312)
372 PF13925 Katanin_con80: con80 29.0 2.8E+02 0.0061 24.5 7.6 72 307-386 28-99 (164)
373 PRK09108 type III secretion sy 28.5 51 0.0011 33.3 3.0 34 13-47 214-248 (353)
374 PF06012 DUF908: Domain of Unk 28.5 1.2E+02 0.0027 30.2 5.8 53 354-406 263-324 (329)
375 PF01365 RYDR_ITPR: RIH domain 28.3 1.4E+02 0.0029 27.5 5.7 117 214-338 36-170 (207)
376 PF11791 Aconitase_B_N: Aconit 28.2 2E+02 0.0043 25.1 6.0 44 326-386 81-124 (154)
377 KOG2676 Uncharacterized conser 28.1 77 0.0017 31.7 4.0 54 199-252 376-431 (478)
378 PRK12721 secretion system appa 28.0 52 0.0011 33.2 3.0 33 13-46 212-245 (349)
379 PRK12772 bifunctional flagella 27.9 49 0.0011 36.2 3.0 34 13-47 475-509 (609)
380 KOG4524 Uncharacterized conser 27.8 1.8E+02 0.0038 33.2 7.0 96 263-367 801-900 (1014)
381 KOG0392 SNF2 family DNA-depend 26.7 7.2E+02 0.016 29.7 11.5 94 323-427 144-237 (1549)
382 PF01312 Bac_export_2: FlhB Hr 26.2 67 0.0014 32.4 3.4 33 13-46 214-247 (343)
383 PF08389 Xpo1: Exportin 1-like 26.2 3.9E+02 0.0084 22.3 8.7 49 108-162 100-148 (148)
384 KOG2374 Uncharacterized conser 26.0 3.2E+02 0.007 28.7 8.0 88 307-407 6-93 (661)
385 KOG0301 Phospholipase A2-activ 25.7 9.3E+02 0.02 26.6 13.3 142 276-428 555-705 (745)
386 PF12397 U3snoRNP10: U3 small 25.6 3.8E+02 0.0082 22.0 10.1 67 356-428 6-75 (121)
387 KOG4524 Uncharacterized conser 24.7 2.6E+02 0.0057 31.9 7.7 73 356-429 803-878 (1014)
388 KOG4231 Intracellular membrane 24.6 61 0.0013 33.9 2.7 71 356-426 328-398 (763)
389 TIGR00328 flhB flagellar biosy 24.3 67 0.0015 32.4 3.0 33 13-46 212-245 (347)
390 PF08064 UME: UME (NUC010) dom 24.1 2.7E+02 0.0058 22.6 6.0 79 307-396 11-95 (107)
391 PRK05702 flhB flagellar biosyn 23.9 69 0.0015 32.5 3.0 34 13-47 219-253 (359)
392 PRK06298 type III secretion sy 23.6 70 0.0015 32.4 3.0 33 13-46 213-246 (356)
393 PF12783 Sec7_N: Guanine nucle 23.6 4.5E+02 0.0098 23.0 8.0 73 355-428 72-147 (168)
394 smart00273 ENTH Epsin N-termin 23.6 2.1E+02 0.0045 23.9 5.5 72 453-524 42-120 (127)
395 PRK13109 flhB flagellar biosyn 23.5 71 0.0015 32.4 3.0 33 13-46 221-254 (358)
396 KOG2213 Apoptosis inhibitor 5/ 23.4 8.2E+02 0.018 25.1 16.5 241 92-365 26-288 (460)
397 KOG1087 Cytosolic sorting prot 23.3 3.7E+02 0.008 28.4 8.2 94 365-476 14-109 (470)
398 smart00802 UME Domain in UVSB 23.3 2.3E+02 0.005 23.1 5.4 79 307-396 11-95 (107)
399 PRK08156 type III secretion sy 21.7 82 0.0018 31.9 3.0 33 13-46 207-240 (361)
400 KOG2149 Uncharacterized conser 21.7 2.9E+02 0.0062 28.2 6.7 110 309-427 60-170 (393)
401 PRK12468 flhB flagellar biosyn 21.4 83 0.0018 32.2 3.0 33 13-46 219-252 (386)
402 PF06367 Drf_FH3: Diaphanous F 20.8 3.1E+02 0.0066 24.8 6.5 73 449-521 20-99 (197)
403 PRK12773 flhB flagellar biosyn 20.6 77 0.0017 34.2 2.6 33 13-46 510-543 (646)
404 PF01365 RYDR_ITPR: RIH domain 20.6 2.4E+02 0.0052 25.9 5.8 94 154-251 77-170 (207)
405 PF14663 RasGEF_N_2: Rapamycin 20.6 2E+02 0.0042 23.8 4.6 39 179-219 9-47 (115)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.5e-97 Score=687.81 Aligned_cols=475 Identities=30% Similarity=0.493 Sum_probs=428.4
Q ss_pred HHh-hh-cCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHH
Q 009647 25 VIW-FL-VGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVA 101 (530)
Q Consensus 25 ~~~-~~-~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 101 (530)
.|| |+ ..++.+|||| +++++|||+||||.|.|||++ .+..++.+.+. ++.. +....+++++.+
T Consensus 13 ~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl-~dv~e~a~ss~------------i~me-qq~~~elp~lt~ 78 (526)
T COG5064 13 NFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNL-ADVSEEAESSF------------IPME-QQFYSELPQLTQ 78 (526)
T ss_pred cccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccchhhhcc------------Cchh-HHhhhhhHHHHH
Confidence 777 54 4467777777 699999999999999999975 33333332110 0110 113457888888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CC
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA 179 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~ 179 (530)
.+.|+|.+.+++|+..+|++||.+..||++.+|++|+||++|+|+.....+.+++||+|+|+||+||+..+++.++ |+
T Consensus 79 ~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~A 158 (526)
T COG5064 79 QLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGA 158 (526)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCc
Confidence 8889999999999999999999999999999999999999999997666677899999999999999999999988 79
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHHHHHhhcCCCCCch
Q 009647 180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPA 257 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~ 257 (530)
||.|+++|.+ ++.+|++|++|+|||||+|++.+|+.++++|++.|++.++.++ +.++.++++|+|+|||++++|.|.
T Consensus 159 VPlfiqlL~s-~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 159 VPLFIQLLSS-TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred hHHHHHHHcC-chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 9999999988 7889999999999999999999999999999999999999875 569999999999999999998887
Q ss_pred hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647 258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 337 (530)
... .+.++|.|.+++.+.|++++.+|||+++||++++.+.++++++.|+.++|+++| .+++..+++||+|.+|||++
T Consensus 238 w~~--isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL-s~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 238 WSN--ISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred hHH--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh-cCccccccCHHHHhhcCeee
Confidence 665 469999999999999999999999999999999999999999999999999999 58999999999999999999
Q ss_pred CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647 338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417 (530)
Q Consensus 338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e 417 (530)
|++.|++.++++ |+++.|..+|++++..+|++|||+|+||++|+.++++++++++++|+|+++|.+.++.+++|
T Consensus 315 G~D~QTqviI~~------G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 315 GSDDQTQVIINC------GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred cCccceehheec------ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 999999999987 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC---------Ccchh
Q 009647 418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN---------HEGTK 488 (530)
Q Consensus 418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~---------~~~~~ 488 (530)
||||++|.++++. +.| +++++|+++|+|++||++|...|.++++++|++++++|+.++. +.|..
T Consensus 389 ACWAisNatsgg~---~~P----D~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~ 461 (526)
T COG5064 389 ACWAISNATSGGL---NRP----DIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAV 461 (526)
T ss_pred HHHHHHhhhcccc---CCc----hHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHH
Confidence 9999999988642 334 7899999999999999999999999999999999999986531 24678
Q ss_pred HHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCCCC
Q 009647 489 LVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 530 (530)
Q Consensus 489 ~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~~~ 530 (530)
++|+.||++.|..||.+.|.+||.+|.+||++||++||.+||
T Consensus 462 ~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~ 503 (526)
T COG5064 462 YVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDE 503 (526)
T ss_pred HHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhh
Confidence 999999999999999999999999999999999999998765
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-92 Score=705.78 Aligned_cols=472 Identities=33% Similarity=0.539 Sum_probs=422.4
Q ss_pred HHHHh-hhcCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHH
Q 009647 23 CSVIW-FLVGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAV 100 (530)
Q Consensus 23 ~~~~~-~~~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 100 (530)
++.|| |++|.+++|||| |..|+|||+||||+|.|||+. . .+... ....+ .. .. ...++..++
T Consensus 9 ~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~--~-~~~~~---~~~~~--~~----~~----~~~~~~~~~ 72 (514)
T KOG0166|consen 9 RRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRND--E-EELML---DELLS--DS----QS----QASNLELML 72 (514)
T ss_pred HHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhh--h-hhccc---ccccc--hh----HH----HhhhhHHHH
Confidence 44555 668988888877 799999999999999999961 1 11000 00000 01 11 112244455
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--C
Q 009647 101 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--P 178 (530)
Q Consensus 101 ~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~ 178 (530)
..+.|+++..++.|+..+|+++|.+.+||++.++.+|+||.||++|..++++.+|+||+|+|+|||+|++++++.++ |
T Consensus 73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~ag 152 (514)
T KOG0166|consen 73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAG 152 (514)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCC
Confidence 55679999999999999999999999999999999999999999999888889999999999999999999999999 7
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCCh-hHHHHHHHHHHHhhcCCCCCch
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG-STVRTAAWALSNLIKGPDPKPA 257 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~nL~~~~~~~~~ 257 (530)
++|.|+.+|.+ ++.+|+++|+|+||||++|++.+|+.++.+|++++|+.++..++. .+.++++|+|+|||++++|.|.
T Consensus 153 avp~fi~Ll~s-~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~ 231 (514)
T KOG0166|consen 153 AVPIFIQLLSS-PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP 231 (514)
T ss_pred chHHHHHHhcC-CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 99999999998 899999999999999999999999999999999999999997754 8999999999999999988877
Q ss_pred hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647 258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 337 (530)
.+. ...++|.|..++++.|++++.+|||+++||++++++.++.+++.|++++|+++| .+.+..++.||++++|||++
T Consensus 232 ~~~--v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL-~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 232 FDV--VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL-GHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred HHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH-cCCCcccccHHHhhccceee
Confidence 666 469999999999999999999999999999999999999999999999999999 58899999999999999999
Q ss_pred CCccccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647 338 GDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 416 (530)
Q Consensus 338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~ 416 (530)
|++.|+|.++++ |++|.|..++. +....++++|||+||||++|+++++++++++|++|.|+++|+++++++|+
T Consensus 309 G~d~QTq~vi~~------~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rK 382 (514)
T KOG0166|consen 309 GSDEQTQVVINS------GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRK 382 (514)
T ss_pred ccHHHHHHHHhc------ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHH
Confidence 999999999976 69999999998 56667999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC------CcchhHH
Q 009647 417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN------HEGTKLV 490 (530)
Q Consensus 417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~------~~~~~~i 490 (530)
||+|||+|++.+ |+ ++|+.+|++.|+|++||++|...|++++.++|++|++|++.++. ++++.+|
T Consensus 383 EAawaIsN~ts~-----g~----~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~I 453 (514)
T KOG0166|consen 383 EAAWAISNLTSS-----GT----PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMI 453 (514)
T ss_pred HHHHHHHhhccc-----CC----HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 999999999875 44 48899999999999999999999999999999999999986542 4667899
Q ss_pred HHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCCC
Q 009647 491 EREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLD 529 (530)
Q Consensus 491 ~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~~ 529 (530)
|++||+++||.||+|+|++||++|..||++||++|++++
T Consensus 454 Ee~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~ 492 (514)
T KOG0166|consen 454 EEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDED 492 (514)
T ss_pred HHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCcccc
Confidence 999999999999999999999999999999999986543
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=7.1e-43 Score=397.00 Aligned_cols=402 Identities=21% Similarity=0.178 Sum_probs=336.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-
Q 009647 99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL- 177 (530)
Q Consensus 99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~- 177 (530)
++..+.++++..+..|+..+.++++..+ .++..+++.|+||.|+++|.+++++.++.+|+|+|+||+++++++++.++
T Consensus 194 LV~LLsS~d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~ 272 (2102)
T PLN03200 194 LVKLLSSGNSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD 272 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3344458999999999999877765543 36788999999999999998766667888899999999999999999998
Q ss_pred -CCcHHHHHhhcCCC--------CHHHHHHHHHHHHhhcCCCch-----------hHHHH---HhcCChhhhHhhcCCCC
Q 009647 178 -PALPLLIAHLGEKS--------SSPVAEQCAWALGNVAGEGEE-----------FRNVL---LSQGALPPLARMMLPNK 234 (530)
Q Consensus 178 -~~v~~L~~lL~~~~--------~~~v~~~a~~~L~nla~d~~~-----------~r~~~---~~~g~i~~L~~lL~~~~ 234 (530)
|++|.|++++.++. +..++++|+|+|+|||++.+. .|+.. ...|++++++.++..++
T Consensus 273 aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~ 352 (2102)
T PLN03200 273 AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSA 352 (2102)
T ss_pred CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCch
Confidence 89999999997522 245699999999999997544 33332 45688999999888665
Q ss_pred hhHH----HHHHHHHHHhhcCCCCCchhh-----------------HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009647 235 GSTV----RTAAWALSNLIKGPDPKPATE-----------------LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 293 (530)
Q Consensus 235 ~~~~----~~a~~~L~nL~~~~~~~~~~~-----------------~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 293 (530)
.... .+++|+|.+||++++|.+..+ .+...++++.|+.++...+.+++.+++|+|.||+
T Consensus 353 ~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~ 432 (2102)
T PLN03200 353 ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLC 432 (2102)
T ss_pred hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHh
Confidence 4433 478899999999876665221 2234577888999999999999999999999999
Q ss_pred cCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH
Q 009647 294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 373 (530)
Q Consensus 294 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~ 373 (530)
+++++.++.+.+.|+++.|+++| .+++..++.+|+++|+|++.+++.+++.++++ |++|.|+++|.+++..++
T Consensus 433 ~~~~e~~~aIi~~ggIp~LV~LL-~s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea------GaIP~LV~LL~s~~~~iq 505 (2102)
T PLN03200 433 CGKGGLWEALGGREGVQLLISLL-GLSSEQQQEYAVALLAILTDEVDESKWAITAA------GGIPPLVQLLETGSQKAK 505 (2102)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------CCHHHHHHHHcCCCHHHH
Confidence 98899999999999999999999 57888999999999999999998888888865 699999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-hCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647 374 KEAAWVLSNIAAGSVEHKQLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452 (530)
Q Consensus 374 ~~A~~~Lsnl~~~~~~~~~~li-~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i 452 (530)
++|+|+|+|++.++ ++++.++ ++|++|+|+++|.+++++++++|+|+|+|++.+.+ .+ .+
T Consensus 506 eeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d---------~~---------~I 566 (2102)
T PLN03200 506 EDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD---------AA---------TI 566 (2102)
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc---------hh---------HH
Confidence 99999999999865 5555555 78999999999999999999999999999987531 12 33
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcc-hhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCC
Q 009647 453 SGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG-TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYG 527 (530)
Q Consensus 453 ~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~-~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~ 527 (530)
++++.+|.++++.++..++++|.+|+........ .......||++.|.+|+.|+++++|+.|.++|.+||....+
T Consensus 567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 7899999999999999999999999876544221 12234679999999999999999999999999999986543
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-40 Score=334.32 Aligned_cols=364 Identities=21% Similarity=0.321 Sum_probs=317.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-hhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647 139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215 (530)
Q Consensus 139 v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~-~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 215 (530)
.+.+++.+.+++ ...+.++...+..+.+... .....++ |.||.|+.+|....++.++..|+|+|.|||+.+.+.-.
T Consensus 68 ~~~~~~~~~S~~-~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDD-PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCC-HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 667777777766 4557888888888775432 3344444 89999999998767799999999999999999999999
Q ss_pred HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH-HHHHHHHHHHHHhhc
Q 009647 216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSA 294 (530)
Q Consensus 216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~ 294 (530)
.++++|++|.++.++.+++..+++.|+|+|+|++.+ . ..+++++...|++++|+.++..++. .++..+.|+|+|||+
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s-~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-S-PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-C-hHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999944 3 4678899899999999999998876 788999999999999
Q ss_pred CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647 295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 374 (530)
Q Consensus 295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~ 374 (530)
+.+..-..-.-..++|.|..++ .+.|++++..|+|+|++++.+.++.++.++++ |++|.|+.+|.+....++.
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~------gvv~~LV~lL~~~~~~v~~ 297 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDA------GVVPRLVDLLGHSSPKVVT 297 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc------cchHHHHHHHcCCCccccc
Confidence 8654433333456899999988 69999999999999999999999999999975 6999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChH
Q 009647 375 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 453 (530)
Q Consensus 375 ~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~ 453 (530)
.|+.+++||++|++.+.+.+++.|++|.|..++. +....+++||||+|+|++.+ + .+|++++++.|++|
T Consensus 298 PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG------~----~~qiqaVida~l~p 367 (514)
T KOG0166|consen 298 PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG------N----QEQIQAVIDANLIP 367 (514)
T ss_pred HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC------C----HHHHHHHHHcccHH
Confidence 9999999999999999999999999999999998 56666999999999999974 3 58999999999999
Q ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647 454 GFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 454 ~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~ 523 (530)
.|+++|...|.+++..|.++|.|++..+.. .-..++.+.|.++.+-.|..-.+..+...+...++..+.
T Consensus 368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~~-~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 368 VLINLLQTAEFDIRKEAAWAISNLTSSGTP-EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhcccCCH-HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876642 334677889999999999988888888888777776653
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=367.84 Aligned_cols=409 Identities=19% Similarity=0.196 Sum_probs=349.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-
Q 009647 99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL- 177 (530)
Q Consensus 99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~- 177 (530)
++..+.+.+.+.|.+++.+|+.+.. +.+..++.+++.|++|.|+++|.+++ ...|..|+|+|.|++.++.+++..++
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~-~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCC-GKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhC-CCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344457889999999999999854 44566788999999999999999865 67778899999999999988888888
Q ss_pred -CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc
Q 009647 178 -PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP 256 (530)
Q Consensus 178 -~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~ 256 (530)
|++|.|+++|.+ ++.+++++|+|+|+|++.++++.|..+...|++|+|+.+|++.+...++.++|+|.||+.+.++..
T Consensus 487 aGaIP~LV~LL~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~ 565 (2102)
T PLN03200 487 AGGIPPLVQLLET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT 565 (2102)
T ss_pred CCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH
Confidence 899999999987 789999999999999999888888888899999999999999999999999999999975422210
Q ss_pred h-----------------------------------hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHH
Q 009647 257 A-----------------------------------TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301 (530)
Q Consensus 257 ~-----------------------------------~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~ 301 (530)
. .+.+...+++|.|..++.+++++++..|+|+|.+++.++.+.++
T Consensus 566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 0 00011357999999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc-ccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHH
Q 009647 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL 380 (530)
Q Consensus 302 ~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~L 380 (530)
.++..|++++++.+| .+.+.+++..+.++|+|++.+... +...+++ .|++|+|+.+|.+.+..++..|+.+|
T Consensus 646 avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~------~GaV~pL~~LL~~~d~~v~e~Al~AL 718 (2102)
T PLN03200 646 SLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAA------EDAIKPLIKLAKSSSIEVAEQAVCAL 718 (2102)
T ss_pred HHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH------cCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 999999999999999 588889999999999999975443 3445554 47999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHH-HHHHHHhcCChHHHHhhh
Q 009647 381 SNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE-HLVSLVGRGCLSGFIDLV 459 (530)
Q Consensus 381 snl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~-~~~~l~~~g~i~~L~~lL 459 (530)
.||+... +....+.+.|++++|+++|++++++.|+.|+|+|.++|.+.. . .+ ...++...|++.+|+++|
T Consensus 719 anLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~-----~---~~~~~~~~~~~g~v~~l~~~L 789 (2102)
T PLN03200 719 ANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP-----V---DDVLKDSVQCRGTVLALVDLL 789 (2102)
T ss_pred HHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC-----h---hHHHHHHHHHhCcHHHHHHHH
Confidence 9998866 567778888999999999999999999999999999997531 1 12 236677899999999999
Q ss_pred ccCCHHHHHH--HHHHHHHHHccCCC-----CcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCC
Q 009647 460 RSADIEAARL--GLQFMELVLRGMPN-----HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDY 526 (530)
Q Consensus 460 ~~~d~~i~~~--~L~~L~~il~~~~~-----~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~ 526 (530)
+..|.+.... +|++|.++.+.... ++....+|..++++.|.....|+++.+|++|..||+++..+..
T Consensus 790 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 790 NSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred hcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 9999887776 99999999985332 2446788999999999666699999999999999999988754
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.6e-39 Score=301.19 Aligned_cols=363 Identities=20% Similarity=0.292 Sum_probs=307.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhc-CChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647 139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAA-GKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215 (530)
Q Consensus 139 v~~Lv~lL~~~~~~~~~~eA~~~L~nia~-~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 215 (530)
+|.|.+-|-+++ -+.|..|..-+..+.| .+....+.++ |.||.|+++|.+....-++-.|+|+|.||++......+
T Consensus 73 lp~lt~~l~SdD-ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 73 LPQLTQQLFSDD-IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hHHHHHHHhhhH-HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 477777777655 5566777666666554 4445567777 79999999996656667888999999999998878788
Q ss_pred HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH--HHHHHHHHHHHHhh
Q 009647 216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE--ELTTEVAWVVVYLS 293 (530)
Q Consensus 216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L~ 293 (530)
.++++|++|.++++|.++..++++.++|+|.|++ ++ ...++++|...|++.+++.++.+.-. .++.++.|+|+|||
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiA-GD-S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIA-GD-SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhcccc-CC-chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 8999999999999999999999999999999999 44 35689999999999999999987654 78999999999999
Q ss_pred cCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH
Q 009647 294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 373 (530)
Q Consensus 294 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~ 373 (530)
++....-..-.-..++|.|..++ .+.+++++..|+|+|++++.+..+.++.+++. |..+.|+.+|.|++..|+
T Consensus 230 RGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~------g~~~RLvElLs~~sa~iq 302 (526)
T COG5064 230 RGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDV------GIPGRLVELLSHESAKIQ 302 (526)
T ss_pred CCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhc------CCcHHHHHHhcCcccccc
Confidence 97433222222234688888888 68899999999999999999999999999976 599999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChH
Q 009647 374 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 453 (530)
Q Consensus 374 ~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~ 453 (530)
..|+..++||..|++.+.+.+++.|+++.+-.+|.++...+++||||+|+|++.+. .+|++++++.+++|
T Consensus 303 tPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn----------teqiqavid~nliP 372 (526)
T COG5064 303 TPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN----------TEQIQAVIDANLIP 372 (526)
T ss_pred CHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC----------HHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999998743 48999999999999
Q ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCc-chhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 454 GFIDLVRSADIEAARLGLQFMELVLRGMPNHE-GTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 454 ~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~-~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
+|+++|.+.+.++.+.+.+++.|...++-+-+ .-+.+.+.|.++.|..+..-.+..|-+.+..-++..
T Consensus 373 pLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eni 441 (526)
T COG5064 373 PLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENI 441 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHH
Confidence 99999999999999999999999987664322 246777889999999988776666666666666544
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.4e-28 Score=228.20 Aligned_cols=349 Identities=19% Similarity=0.211 Sum_probs=292.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCc
Q 009647 103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PAL 180 (530)
Q Consensus 103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v 180 (530)
+++.|+..+..|..++-++.-...+.- .+++.+++..|+.-+-.+. .++|+.|..|++|++.-++ .+..+. |++
T Consensus 94 lqs~d~~Iq~aa~~alGnlAVn~enk~--liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~-nk~kiA~sGaL 169 (550)
T KOG4224|consen 94 LQSCDKCIQCAAGEALGNLAVNMENKG--LIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDS-NKVKIARSGAL 169 (550)
T ss_pred HhCcchhhhhhhhhhhccceeccCCce--EEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcccc-chhhhhhccch
Confidence 359999999999999988755555543 3667777766665555444 4678889999999997643 344443 899
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL 260 (530)
Q Consensus 181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 260 (530)
.+++++-++ .+..++..+..+|.|+.. +.+.|..++..|++|.|++++++.++.++..|+.+++|++-.. ..+..
T Consensus 170 ~pltrLaks-kdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~---~~Rk~ 244 (550)
T KOG4224|consen 170 EPLTRLAKS-KDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR---RARKI 244 (550)
T ss_pred hhhHhhccc-chhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH---HHHHH
Confidence 999995554 889999999999999996 7799999999999999999999999999999999999998652 33444
Q ss_pred HHhhc--hHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 261 IKVDG--LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 261 v~~~~--~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
+...+ .+|.|+.++.++++.++..|..+|.+|+. +.++...++++|.+|.++++| .++..........|+.||+-.
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELL-QSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhcccc
Confidence 44455 99999999999999999999999999998 567888899999999999999 477667777888899999866
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e 417 (530)
.-... -++ +.|++.+|+.+|..++. .++-.|.-+|.|+++.+......+++.|.+|.++.++.++...+|.+
T Consensus 323 plNe~-lI~------dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 323 PLNEV-LIA------DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred cCccc-cee------cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence 53322 234 45799999999988765 59999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647 418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~ 480 (530)
...+++-++.+. ....++.+.|+++.|+.++.+.+.++..++..+|.|+...
T Consensus 396 isac~a~Lal~d-----------~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 396 ISACIAQLALND-----------NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHHHHhcc-----------ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 988998888753 3457899999999999999999999999999999998753
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2e-26 Score=217.12 Aligned_cols=351 Identities=18% Similarity=0.233 Sum_probs=295.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CC
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA 179 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~ 179 (530)
.+.++..+.|..++.++.++....++. ..+..+|++.++.++-++.+ ...|+.|..+|.|+.... +.++.++ |+
T Consensus 134 qmmtd~vevqcnaVgCitnLaT~d~nk--~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs~-EnRr~LV~aG~ 209 (550)
T KOG4224|consen 134 QMMTDGVEVQCNAVGCITNLATFDSNK--VKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHSR-ENRRVLVHAGG 209 (550)
T ss_pred HhcCCCcEEEeeehhhhhhhhccccch--hhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhhh-hhhhhhhccCC
Confidence 334677889999999999997775544 45888999999999656554 567889999999998654 4566666 89
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcC--ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647 180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 257 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~ 257 (530)
+|.|+.++.+ .++++++.|..+++||+.| ...|+.+.+.+ .+|.|+.++.++++.+...|..+|.||+... ...
T Consensus 210 lpvLVsll~s-~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq 285 (550)
T KOG4224|consen 210 LPVLVSLLKS-GDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQ 285 (550)
T ss_pred chhhhhhhcc-CChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhh
Confidence 9999999998 7999999999999999985 58899999998 9999999999999999999999999999753 455
Q ss_pred hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647 258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 337 (530)
++++ ..|.+|.++++|+++.-........|+.|++- .+-+...+.++|.+.+||++|....+++++..|..+|.|++.
T Consensus 286 ~eiv-~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 286 REIV-EAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hHHH-hcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 6665 69999999999998877777778889999987 455566788999999999999655667799999999999998
Q ss_pred CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647 338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417 (530)
Q Consensus 338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e 417 (530)
........+.+ .|++|.+..++.+...+++.+...+++.++.. +.....+.+.|++|.|+.++.+.+.+++-.
T Consensus 364 sse~n~~~i~e------sgAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gN 436 (550)
T KOG4224|consen 364 SSEHNVSVIRE------SGAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGN 436 (550)
T ss_pred hhhhhhHHHhh------cCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhccc
Confidence 77777777775 47999999999999999999999999988764 466788999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHHHh------cCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647 418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG------RGCLSGFIDLVRSADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~------~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~ 480 (530)
|+.+|.|++.. +++...+++ .|+-..|..++.+.+..+...+.+.+..++..
T Consensus 437 aAaAL~Nlss~-----------v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 437 AAAALINLSSD-----------VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred HHHHHHhhhhh-----------hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999874 234444443 35566788899988888888999999888854
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=2.7e-22 Score=213.18 Aligned_cols=374 Identities=20% Similarity=0.236 Sum_probs=294.5
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhc
Q 009647 111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLG 188 (530)
Q Consensus 111 ~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~ 188 (530)
...|...|-++.... .-...+.+.|+|+.|+.+|.+++ .++..-++++|.++|.... ++..+. |+||.|++++.
T Consensus 266 lrv~~~lLlNLAed~--~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDP--RVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHhcCh--HHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhc
Confidence 334555566663222 22246778999999999999876 6677889999999997654 555555 89999999998
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHH
Q 009647 189 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 268 (530)
Q Consensus 189 ~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~ 268 (530)
+ ++.+++..++++|.|++.| +..|..++..|++|.|+.+|.+++ .+..++..|.+|+..+. .+..+...+++|
T Consensus 342 s-~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~---~r~~f~~TdcIp 414 (708)
T PF05804_consen 342 S-ENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDE---ARSMFAYTDCIP 414 (708)
T ss_pred C-CCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHh---hHHHHhhcchHH
Confidence 7 7889999999999999995 688999999999999999998654 55668889999997643 344555678999
Q ss_pred HHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhc
Q 009647 269 AILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVL 347 (530)
Q Consensus 269 ~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i 347 (530)
.+++++. .+++.+..++++.+.||+. +..+.+.+.+.|+++.|++...+..+ .-.+..+.|++.+++.....+.
T Consensus 415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~ 489 (708)
T PF05804_consen 415 QLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELFV 489 (708)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHHH
Confidence 9998765 4567788889999999998 56778889998999999987754333 2345789999988743322232
Q ss_pred ccCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC--ChhHHHHHHHHHHH
Q 009647 348 VPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--PFDIKKEVAYVLGN 424 (530)
Q Consensus 348 ~~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~--~~~v~~eA~~aL~n 424 (530)
+++..|+.++.++ +.+...+++.+|+|++..+....+.+.+.+++|.|.++|..+ +.++.-|++..++.
T Consensus 490 --------~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gt 561 (708)
T PF05804_consen 490 --------DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGT 561 (708)
T ss_pred --------HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 5788888888765 568999999999999887655666666789999999999643 45899999999999
Q ss_pred hcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHH
Q 009647 425 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF 502 (530)
Q Consensus 425 l~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L 502 (530)
++..+ +....+.+.|+++.|+++|.. .|.+++...+-+++.++.+.+. ...++.+.+....|..|
T Consensus 562 la~d~-----------~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t--r~~ll~~~~~~~ylidL 628 (708)
T PF05804_consen 562 LASDP-----------ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET--REVLLKETEIPAYLIDL 628 (708)
T ss_pred HHCCH-----------HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH--HHHHHhccchHHHHHHH
Confidence 98742 345677799999999999997 5688999999999999976431 23456778888999999
Q ss_pred hcCCcHHHHHHHHHHHHhh
Q 009647 503 QFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 503 ~~~~~~~i~~~A~~il~~~ 521 (530)
.++.|++|++.|...|+-.
T Consensus 629 ~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 629 MHDKNAEIRKVCDNALDII 647 (708)
T ss_pred hcCCCHHHHHHHHHHHHHH
Confidence 9999999999886655533
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.85 E-value=6.6e-19 Score=187.41 Aligned_cols=352 Identities=18% Similarity=0.202 Sum_probs=273.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 172 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~ 172 (530)
+.-|++++ .+++.+..+.++..|+++ |.... ....+.+.|+||+|++++.+++ ..++..|.++|.|+|.+.. .
T Consensus 292 V~~Lv~~L---dr~n~ellil~v~fLkkL-Si~~E-NK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd~~-~ 364 (708)
T PF05804_consen 292 VSLLVKCL---DRENEELLILAVTFLKKL-SIFKE-NKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFDPE-L 364 (708)
T ss_pred HHHHHHHH---cCCCHHHHHHHHHHHHHH-cCCHH-HHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcCHH-H
Confidence 44455555 588999999999999998 54332 3578899999999999999876 5566779999999998765 4
Q ss_pred HHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhh
Q 009647 173 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLI 249 (530)
Q Consensus 173 ~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~ 249 (530)
+..++ |.+|.|+.+|.+ +..+..|+.+|.|++.+ ++.|..+...+++|.+++++- .++..+...+++.+.||+
T Consensus 365 R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 56666 899999999976 34667799999999985 588999999999999999765 456777778899999999
Q ss_pred cCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647 250 KGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328 (530)
Q Consensus 250 ~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a 328 (530)
..+ + ..+.+...++++.|++... ..|+- .+..+.|++..+......+ .+.+..|+..+....+++....+
T Consensus 441 ~~~--r-naqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f--~~~i~~L~~~v~~~~~ee~~vE~ 511 (708)
T PF05804_consen 441 LNK--R-NAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELF--VDFIGDLAKIVSSGDSEEFVVEC 511 (708)
T ss_pred cCH--H-HHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHH--HHHHHHHHHHhhcCCcHHHHHHH
Confidence 763 2 3345556788999886654 34432 2358889998653333333 25778888888655678889999
Q ss_pred HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH
Q 009647 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL 406 (530)
Q Consensus 329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l 406 (530)
+.+|+|+...+....+.+. +.+++|.|..+|..+ .+++.-+++..++.++. .+.....+.+.|+++.|+.+
T Consensus 512 LGiLaNL~~~~ld~~~ll~------~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~L 584 (708)
T PF05804_consen 512 LGILANLTIPDLDWAQLLQ------EYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIEL 584 (708)
T ss_pred HHHHHhcccCCcCHHHHHH------hCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHH
Confidence 9999999977655555444 357999999999755 45799999999999975 45666667789999999999
Q ss_pred hcC--CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH-hcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647 407 LST--SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482 (530)
Q Consensus 407 L~~--~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~ 482 (530)
|.. .|.++.-..++++..+..+. +.+..++ +.+++..|++++.++++++...|=.+|.-|..+.+
T Consensus 585 L~~kqeDdE~VlQil~~f~~ll~h~-----------~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 585 LNAKQEDDEIVLQILYVFYQLLFHE-----------ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHhhCchHHHHHHHHHHHHHHHcCh-----------HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 954 45678888999999999873 3355665 57899999999999999999988888888876543
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=1.1e-18 Score=181.59 Aligned_cols=406 Identities=19% Similarity=0.187 Sum_probs=287.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
.-.++++.+.++.+.++..|-.|...+..+ +..++.-...+-+.|.||.||.+|.+.. .++|..|+|+|.|+..++..
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHl-cfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHL-CFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKST 308 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHH-HhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCC
Confidence 334555555555699999999999888887 6666665567778999999999999876 78889999999999988765
Q ss_pred --hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--------------
Q 009647 172 --ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-------------- 233 (530)
Q Consensus 172 --~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-------------- 233 (530)
+..++. ++||.++.+|....+.+++++...+|+|+++. +.++..++. .++..|...+-.+
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~ 386 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAE 386 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccc
Confidence 555665 79999999999767899999999999999983 455555554 4566666543211
Q ss_pred ChhHHHHHHHHHHHhhcCCCCCchhhH-HHhhchHHHHHHHhc------cCCHHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 009647 234 KGSTVRTAAWALSNLIKGPDPKPATEL-IKVDGLLDAILRHLK------RADEELTTEVAWVVVYLSALSNVATSLLVKS 306 (530)
Q Consensus 234 ~~~~~~~a~~~L~nL~~~~~~~~~~~~-v~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~ 306 (530)
+..+..+++.||.|++... ...++. -...|.+..|+..++ ..|...+++|...|.||+..- +.
T Consensus 387 ~~~vf~n~tgcLRNlSs~~--~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl--------~~ 456 (717)
T KOG1048|consen 387 DSTVFRNVTGCLRNLSSAG--QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRL--------EA 456 (717)
T ss_pred cceeeehhhhhhccccchh--HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchh--------hh
Confidence 3678999999999998642 233433 335688999988876 346678899999999998621 11
Q ss_pred CchHHHHHHHhcCC---CccchhhhHHHHhhhhcCCccccch-------hcccCC--CcchhhHHHHHHHhc-cCcHhHH
Q 009647 307 GVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTISD-------VLVPGH--GITDQVIAVLVKCLK-SEHRVLK 373 (530)
Q Consensus 307 g~l~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~~-------~i~~g~--~~~~~~l~~L~~lL~-~~~~~i~ 373 (530)
.+.+.....+.... ...-......|++.-....+...+. ...-|. .+...++..-..+|. +.++.+.
T Consensus 457 Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~Tl 536 (717)
T KOG1048|consen 457 EVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTL 536 (717)
T ss_pred hcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHH
Confidence 22333332221110 0000112333444333221111000 000011 133456666555554 4567889
Q ss_pred HHHHHHHHHHhcCCH----HHHHHH-HhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647 374 KEAAWVLSNIAAGSV----EHKQLI-HSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448 (530)
Q Consensus 374 ~~A~~~Lsnl~~~~~----~~~~~l-i~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~ 448 (530)
+.++.+|.|++++.. ..+..+ ....++|+|+.+|+.++.+|.+.++.+|.|++.+. ..+.++.
T Consensus 537 EasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~------------rnk~lig 604 (717)
T KOG1048|consen 537 EASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI------------RNKELIG 604 (717)
T ss_pred HHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc------------hhhhhhh
Confidence 999999999999742 333444 46789999999999999999999999999999863 3467888
Q ss_pred cCChHHHHhhhccCC------HHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC-cHHHHHHHHHHHHhh
Q 009647 449 RGCLSGFIDLVRSAD------IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-NEDLRNMANGLVDKY 521 (530)
Q Consensus 449 ~g~i~~L~~lL~~~d------~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~-~~~i~~~A~~il~~~ 521 (530)
.++|+.|++.|.... .+++..++..|.+|+... ..+.+.+.+.+|+++|..|..+. ++...+.|..++...
T Consensus 605 k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~--~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 605 KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN--VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh--HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 999999999998743 578888889999998532 23577888999999998886554 678999999999988
Q ss_pred cCCC
Q 009647 522 FGED 525 (530)
Q Consensus 522 f~~~ 525 (530)
|.+.
T Consensus 683 W~y~ 686 (717)
T KOG1048|consen 683 WQYK 686 (717)
T ss_pred HHHH
Confidence 8764
No 12
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.4e-17 Score=170.56 Aligned_cols=388 Identities=18% Similarity=0.182 Sum_probs=284.0
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647 95 ELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 173 (530)
Q Consensus 95 ~l~~~l~~l~s~-d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~ 173 (530)
.+.+++++++.. |+..|++|+..|..+|+........-+--.-+||.|+.+|+...+.+++..|++||++++.--++..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 677788877666 9999999999999999876544333222245899999999988888998999999999997777777
Q ss_pred Hhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcC
Q 009647 174 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 251 (530)
Q Consensus 174 ~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~ 251 (530)
..++ ++||.|+.-|..-+..+|.||++.+|-.|+.+.+ ..+++.|++-..+.+|.--...+++.|+-+.+|.|..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777 5999999877665778999999999999998553 4788999999999999877788999999999999986
Q ss_pred CCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC---CchhHHHHHhcCchHHHHHHHhcCC---Cccch
Q 009647 252 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL---SNVATSLLVKSGVLQLLVERLATSN---SLQLL 325 (530)
Q Consensus 252 ~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~~~~i~~~g~l~~Lv~lL~~~~---~~~v~ 325 (530)
-.+. .+..| ..++|.|..+|.+.|...++.+|-|+.+++++ .++..+.+...|++.....+|.-.+ +..+.
T Consensus 325 i~sd-~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 325 IRSD-EFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred CCCc-cchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 4333 34454 58999999999999999999999999999985 5677888899999999999885221 22344
Q ss_pred hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC-------------------------------------
Q 009647 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE------------------------------------- 368 (530)
Q Consensus 326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~------------------------------------- 368 (530)
+-.++.|..++++.+.....++. .++...|..+|.+.
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k------~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~ 475 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLK------LDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEG 475 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHH------hhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccc
Confidence 56777788777775433222221 11222222222110
Q ss_pred -----------cHhHHHHHHH------------------HHH-------------HHhc---------CCHHHHHHHHhC
Q 009647 369 -----------HRVLKKEAAW------------------VLS-------------NIAA---------GSVEHKQLIHSS 397 (530)
Q Consensus 369 -----------~~~i~~~A~~------------------~Ls-------------nl~~---------~~~~~~~~li~~ 397 (530)
.....-++.| .+. +.-. ..++..+.++.
T Consensus 476 i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~- 554 (1051)
T KOG0168|consen 476 IFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK- 554 (1051)
T ss_pred eeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-
Confidence 0000000110 001 1111 11233344433
Q ss_pred CcHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH-hcCChHHHHhhhccCCHHHHHHHHHHHH
Q 009647 398 EALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFME 475 (530)
Q Consensus 398 ~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L~~lL~~~d~~i~~~~L~~L~ 475 (530)
.++|.|+++.. +.++.|+..++.||..+++... .+.+..++ +..+=..+-.+|.++|..++..+|+..+
T Consensus 555 ~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~---------seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAE 625 (1051)
T KOG0168|consen 555 DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSN---------SELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAE 625 (1051)
T ss_pred HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCC---------HHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHH
Confidence 37899999985 4689999999999999987542 25566666 4556666777999999999999999999
Q ss_pred HHHccCCCCcchhHHHHhchHHHHHHHhcC
Q 009647 476 LVLRGMPNHEGTKLVEREDGIDAMERFQFH 505 (530)
Q Consensus 476 ~il~~~~~~~~~~~i~~~ggl~~L~~L~~~ 505 (530)
.|++..++ .+...|...|.+..+.+|...
T Consensus 626 iLmeKlpd-~F~~~F~REGV~~~v~~L~~~ 654 (1051)
T KOG0168|consen 626 ILMEKLPD-TFSPSFRREGVFHAVKQLSVD 654 (1051)
T ss_pred HHHHHhHH-HhhhhHhhhhHHHHHHHHhcc
Confidence 99988776 456778889999999988763
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=5.7e-16 Score=167.40 Aligned_cols=366 Identities=23% Similarity=0.238 Sum_probs=275.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCC--ChHHHHHHHHHHHHHhcCChh
Q 009647 94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS--PDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~--~~~~~~eA~~~L~nia~~~~~ 171 (530)
+--..++.++...|. .+-...|+.+-+... .. ..+..+|.+|.|+++|.-.+ ..+.++.|-.+|+||...+++
T Consensus 197 ets~sllsml~t~D~---ee~ar~fLemSss~e-sC-aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD 271 (2195)
T KOG2122|consen 197 ETSNSLLSMLGTDDE---EEMARTFLEMSSSPE-SC-AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD 271 (2195)
T ss_pred hhhhHHhhhcccCCH---HHHHHHHHHhccCch-hh-HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence 333355555555665 455666777633332 22 34667999999999997433 345567799999999987765
Q ss_pred hHHh--hcCCcHHHH----------HhhcCC----CC--HHHH-HHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC
Q 009647 172 ETKA--LLPALPLLI----------AHLGEK----SS--SPVA-EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP 232 (530)
Q Consensus 172 ~~~~--i~~~v~~L~----------~lL~~~----~~--~~v~-~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~ 232 (530)
.... .+.+++.|- .+|... .+ .+-+ -.|+.+|-.++. +++.|..+-+.|++..+..|+.-
T Consensus 272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~v 350 (2195)
T KOG2122|consen 272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQV 350 (2195)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHH
Confidence 5321 111222222 122211 01 1222 367888888888 58999999999999999998862
Q ss_pred C------------ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhH
Q 009647 233 N------------KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 300 (530)
Q Consensus 233 ~------------~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 300 (530)
. ...+++.+..+|.||..|+... ...+....|++..++..|.+..+++..-.+.+|.||+...+.+.
T Consensus 351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~N-Ka~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nm 429 (2195)
T KOG2122|consen 351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVAN-KATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNM 429 (2195)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhhccccccccc-hhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccH
Confidence 1 3578999999999999986432 22344567999999999999988999999999999998655554
Q ss_pred -HHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc----HhHHHH
Q 009647 301 -SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH----RVLKKE 375 (530)
Q Consensus 301 -~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~----~~i~~~ 375 (530)
..+.+.|-+..|+..-.....+..++..|.+|.||+.+..+....+-+. .|++..|+.+|...- -.|...
T Consensus 430 KkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaV-----DGALaFLVg~LSY~~qs~tLaIIEs 504 (2195)
T KOG2122|consen 430 KKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAV-----DGALAFLVGTLSYEGQSNTLAIIES 504 (2195)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcc-----cchHHHHHhhccccCCcchhhhhhc
Confidence 4455678888888766555666788999999999998877766555543 489999999998752 367788
Q ss_pred HHHHHHHHh---cCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647 376 AAWVLSNIA---AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452 (530)
Q Consensus 376 A~~~Lsnl~---~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i 452 (530)
|-.+|.|+. +.++.+.|.+.+++.+..|++.|++.+..+...||.+|+||...+ | +.-++|++.|.+
T Consensus 505 aGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~------p----~DQq~LwD~gAv 574 (2195)
T KOG2122|consen 505 AGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARS------P----EDQQMLWDDGAV 574 (2195)
T ss_pred CccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCC------H----HHHHHHHhcccH
Confidence 888888765 346789999999999999999999999999999999999998753 2 344899999999
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647 453 SGFIDLVRSADIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 453 ~~L~~lL~~~d~~i~~~~L~~L~~il~~~ 481 (530)
+.|.+++.++...+..-+..+|.|+|.+-
T Consensus 575 ~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 575 PMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999654
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.72 E-value=6.1e-14 Score=147.91 Aligned_cols=401 Identities=18% Similarity=0.180 Sum_probs=286.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-
Q 009647 99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL- 177 (530)
Q Consensus 99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~- 177 (530)
++.-++..+.+....++..|.+++.... + . .+ ..+..+.|...|.+++ +.++.-+++.|.+++.++......+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~-~-~-~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS-P-D-SL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC-H-H-HH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 3334456778888888888999887442 2 2 22 5778899999999876 56777799999999988776666665
Q ss_pred -CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc
Q 009647 178 -PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP 256 (530)
Q Consensus 178 -~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~ 256 (530)
+.++.++.+|.+ ++..|...|+.+|.+++.. +...+.++..+.++.|..++..++..++..+..++.+++... ..
T Consensus 118 ~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~ 193 (503)
T PF10508_consen 118 NELLPLIIQCLRD-PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS--PE 193 (503)
T ss_pred ccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC--HH
Confidence 589999999988 8899999999999999985 455567888889999999998878888888999999998653 34
Q ss_pred hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCcc----chh-hhHHH
Q 009647 257 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQ----LLI-PVLRS 331 (530)
Q Consensus 257 ~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~----v~~-~al~~ 331 (530)
..+.+...|+++.++..+.++|.-++.+++.+|..|+. .+...+.+.+.|+++.|++++....... +.. ..+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 56677778999999999999888899999999999999 7778899999999999999996432222 233 34588
Q ss_pred HhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHH-HhC-Cc----HHHHHH
Q 009647 332 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI-HSS-EA----LALLLH 405 (530)
Q Consensus 332 L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~l-i~~-~~----l~~Li~ 405 (530)
.|+++...+...-... ..++..+..++.+.++..+..|.-+++.|+. +.+..+.+ ... +. +..+..
T Consensus 273 ~g~la~~~~~~v~~~~-------p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~ 344 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-------PAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGD 344 (503)
T ss_pred HHHHHhcChHHHHHHH-------HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHH
Confidence 8888876433322111 3466677777888999999999999999975 45666666 433 23 444444
Q ss_pred HhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH---HHHhcCChH-HHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647 406 LLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV---SLVGRGCLS-GFIDLVRSADIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 406 lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~---~l~~~g~i~-~L~~lL~~~d~~i~~~~L~~L~~il~~~ 481 (530)
...++..++|..+..+++++....... ..+.+..... .....+... .+.++++.+=+++...++..|..++...
T Consensus 345 ~~~~~~~~lk~r~l~al~~il~~~~~~--~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 345 AIKSGSTELKLRALHALASILTSGTDR--QDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HhcCCchHHHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 556777899999999999996543211 1111111111 122345555 7888898888999999999999997531
Q ss_pred CCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 482 PNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 482 ~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
++ ...+....|.++.|-+=....+++..++=..+++.+
T Consensus 423 -Wg-~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l 460 (503)
T PF10508_consen 423 -WG-QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKAL 460 (503)
T ss_pred -HH-HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHH
Confidence 21 122333344444442223334556655555555444
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.4e-13 Score=129.57 Aligned_cols=320 Identities=17% Similarity=0.182 Sum_probs=237.5
Q ss_pred cCCHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCch
Q 009647 136 AGAIPVLVQCLAF--GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEE 212 (530)
Q Consensus 136 ~g~v~~Lv~lL~~--~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~ 212 (530)
.|..|.++..+.. ..+..+.+.+..+|..+..++++..+. .+...++.+|..+ ++.++....+.++..-|...+.
T Consensus 103 ~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da--~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~ 180 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLFDA--EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEV 180 (461)
T ss_pred CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchhcc--ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHH
Confidence 4555555554432 222334467888888888776643221 3677788887653 4577888888888888887899
Q ss_pred hHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCchh-------hHHHhhchHHHHHHHhcc-CCHHHHH
Q 009647 213 FRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPAT-------ELIKVDGLLDAILRHLKR-ADEELTT 283 (530)
Q Consensus 213 ~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~~-------~~v~~~~~l~~L~~lL~~-~d~~v~~ 283 (530)
+|+.+++.++++.+...|.. ....+++.++|+++.|...++-...+ ..+...+++..|...+.- -||+++.
T Consensus 181 nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~ 260 (461)
T KOG4199|consen 181 NRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLV 260 (461)
T ss_pred HHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHH
Confidence 99999999999999977764 45579999999999998765433211 223345678888888873 4789999
Q ss_pred HHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccch---hhhHHHHhhhhcCCccccchhcccCCCcchhhHHH
Q 009647 284 EVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL---IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV 360 (530)
Q Consensus 284 ~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~---~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~ 360 (530)
+++.+|..|+- .++.++.+.+.|++..|++++.++++...+ ..+|..|..++ |+|.....+++ .|+++.
T Consensus 261 ~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~------~gg~~~ 332 (461)
T KOG4199|consen 261 SLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVE------KGGLDK 332 (461)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHH------hcChHH
Confidence 99999999997 678899999999999999999765655544 46788888877 55566666664 579999
Q ss_pred HHHHhc--cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC-CC-hhHHHHHHHHHHHhcCCCCCCCCCc
Q 009647 361 LVKCLK--SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SP-FDIKKEVAYVLGNLCVSPTEGEGKP 436 (530)
Q Consensus 361 L~~lL~--~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~-~~-~~v~~eA~~aL~nl~~~~~~~~~~~ 436 (530)
++.++. +.+|.|..++|.+++-|+-..|++...+++.|+-...++.++. +. ..+|+.|||.|.|++..+
T Consensus 333 ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs------- 405 (461)
T KOG4199|consen 333 IITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS------- 405 (461)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-------
Confidence 999873 4578999999999999999999999999999999999999964 32 469999999999999764
Q ss_pred hhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHH
Q 009647 437 KLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMEL 476 (530)
Q Consensus 437 ~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~ 476 (530)
.+++..++.. +++.|+..-....+..-..+-.+|.-
T Consensus 406 ---~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 406 ---AENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRD 441 (461)
T ss_pred ---hhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHh
Confidence 2455555554 45667776666555544444444443
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.67 E-value=3.5e-13 Score=142.19 Aligned_cols=384 Identities=21% Similarity=0.222 Sum_probs=280.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhc
Q 009647 109 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG 188 (530)
Q Consensus 109 ~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~ 188 (530)
...++++..+...++..+ ..+...-+.++.+|...+ .+..-.++.+|..+..... ......+..+.|...|.
T Consensus 16 ~~~~~~L~~l~~~~~~~~------~l~~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~~-~~~l~~~~~~~L~~gL~ 87 (503)
T PF10508_consen 16 AERLEALPELKTELSSSP------FLERLPEPVLFDCLNTSN-REQVELICDILKRLLSALS-PDSLLPQYQPFLQRGLT 87 (503)
T ss_pred cchHHHHHHHHHHHhhhh------HHHhchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Confidence 445666666666543321 122223344888888654 3333457778888876432 22223367888888998
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHH
Q 009647 189 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 268 (530)
Q Consensus 189 ~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~ 268 (530)
+ +++.|+..+++.|++++.++......+.+.++++.++.++.+++.++...|+.+|.+|+... . ..+.+...+.++
T Consensus 88 h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~-~~~~l~~~~~~~ 163 (503)
T PF10508_consen 88 H-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--E-GLEQLFDSNLLS 163 (503)
T ss_pred C-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--h-hHHHHhCcchHH
Confidence 7 88999999999999999988888888999999999999999999999999999999999753 2 233444567789
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcc
Q 009647 269 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 348 (530)
Q Consensus 269 ~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~ 348 (530)
.|..++..+++.++..++.++.+++..+++....+.+.|+++.++..|. ++|.-++.+++..|+.++. .+...+.+.+
T Consensus 164 ~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~-~dDiLvqlnalell~~La~-~~~g~~yL~~ 241 (503)
T PF10508_consen 164 KLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD-SDDILVQLNALELLSELAE-TPHGLQYLEQ 241 (503)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc-CccHHHHHHHHHHHHHHHc-ChhHHHHHHh
Confidence 9999999888899999999999999989999999999999999999994 6787888999999999998 4455666664
Q ss_pred cCCCcchhhHHHHHHHhccCc--H---h-HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647 349 PGHGITDQVIAVLVKCLKSEH--R---V-LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422 (530)
Q Consensus 349 ~g~~~~~~~l~~L~~lL~~~~--~---~-i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL 422 (530)
.|+++.|..++.+.. + . +--..+...+|++...+..+..... .++..|.+++.+.|...+.-|..++
T Consensus 242 ------~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p-~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 242 ------QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYP-AFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred ------CCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHhCCCChhHHHHHHHHH
Confidence 579999999996542 2 1 2233346677777754444332222 3566677777889999999999999
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHH-Hhc-----CChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcc-------hhH
Q 009647 423 GNLCVSPTEGEGKPKLIQEHLVSL-VGR-----GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG-------TKL 489 (530)
Q Consensus 423 ~nl~~~~~~~~~~~~~~~~~~~~l-~~~-----g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~-------~~~ 489 (530)
+.++... +-...| ... .++..+.....++..+++..+|+++.+|+........ ...
T Consensus 315 g~igst~-----------~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w 383 (503)
T PF10508_consen 315 GQIGSTV-----------EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESW 383 (503)
T ss_pred HHHhCCH-----------HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 9998642 223344 332 3566777777778889999999999999876543111 123
Q ss_pred HHHhch--HH-HHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647 490 VEREDG--ID-AMERFQFHENEDLRNMANGLVDKYFGE 524 (530)
Q Consensus 490 i~~~gg--l~-~L~~L~~~~~~~i~~~A~~il~~~f~~ 524 (530)
++..++ .. .+..+...+=++++-.|..++...+..
T Consensus 384 ~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 384 YESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 333332 22 456667777799999999988877654
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=7e-14 Score=131.63 Aligned_cols=307 Identities=15% Similarity=0.209 Sum_probs=238.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCChhhHHhhc--CCc
Q 009647 104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-SPDEQLLEAAWCLTNIAAGKQEETKALL--PAL 180 (530)
Q Consensus 104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v 180 (530)
.+++....++++.++..+.... | .+.++.++..++.+|... ++.++..-...++..-|-++..+++.++ ++.
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q--p---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ--P---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC--c---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4667777788888887764322 2 267888999999999743 3334444566777777777777777777 688
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc---------hhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHhhc
Q 009647 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGE---------EFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIK 250 (530)
Q Consensus 181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~---------~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~ 250 (530)
|.+.+.|......++...+.|++.-+..|++ .....+...|++..|+..++.. ++.+...++.+|..|+-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 8888788775666788999999999987653 3445677788999999999853 78899999999999986
Q ss_pred CCCCCchhhHHHhhchHHHHHHHhccCCH----HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC-CCccch
Q 009647 251 GPDPKPATELIKVDGLLDAILRHLKRADE----ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-NSLQLL 325 (530)
Q Consensus 251 ~~~~~~~~~~v~~~~~l~~L~~lL~~~d~----~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~v~ 325 (530)
.+ +.+.++ .+.|++..+++++.+.+. +....++..|..|+- +++....+++.|+.+.++.++..+ .+|.+.
T Consensus 272 r~--E~C~~I-~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi 347 (461)
T KOG4199|consen 272 RD--EICKSI-AESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVI 347 (461)
T ss_pred HH--HHHHHH-HHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHH
Confidence 53 355544 479999999999987443 355678888888884 777888999999999999888755 577888
Q ss_pred hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc-cC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHH
Q 009647 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 403 (530)
Q Consensus 326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~L 403 (530)
..++.+++-++-..++....+++. |+-...++.++ |+ ...+++.|||.|.||+..+.+++..++.. +++.|
T Consensus 348 ~~~~a~i~~l~LR~pdhsa~~ie~------G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~L 420 (461)
T KOG4199|consen 348 QEVMAIISILCLRSPDHSAKAIEA------GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKL 420 (461)
T ss_pred HHHHHHHHHHHhcCcchHHHHHhc------chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHH
Confidence 899999999999888888888875 46667777775 44 34899999999999999998888888886 57888
Q ss_pred HHHhcCCChhHHHHHHHHHHHhc
Q 009647 404 LHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 404 i~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
++.-...++.....|-.+|..+-
T Consensus 421 i~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 421 IRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHhcCccHHHHHHHHHHhcC
Confidence 88887777777777777887774
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.66 E-value=4.8e-15 Score=154.57 Aligned_cols=363 Identities=17% Similarity=0.114 Sum_probs=257.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCC-CcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEF-PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~-~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
+..|+.++..+.+...+++.+|+.+||+++-...+ ...-.|.+.++||.++++|....+.+++..++.+|+|+++.+.
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~- 352 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA- 352 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-
Confidence 44556666666799999999999999999654333 3445788899999999999976667787779999999998743
Q ss_pred hHHhhc-CCcHHHHHhhcCC---------C----CHHHHHHHHHHHHhhcCCCchhHHHHHhc-CChhhhHhhcCC----
Q 009647 172 ETKALL-PALPLLIAHLGEK---------S----SSPVAEQCAWALGNVAGEGEEFRNVLLSQ-GALPPLARMMLP---- 232 (530)
Q Consensus 172 ~~~~i~-~~v~~L~~lL~~~---------~----~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g~i~~L~~lL~~---- 232 (530)
.+..++ .+++.|....-.+ + +.++...+..||.|++..+.+.|..+.++ |.|..|+..+++
T Consensus 353 lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~ 432 (717)
T KOG1048|consen 353 LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK 432 (717)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence 444444 6777776654321 1 25788999999999999899999998876 789999988873
Q ss_pred --CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH----HHHHHHHHHHHHhhcCCch--------
Q 009647 233 --NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE----ELTTEVAWVVVYLSALSNV-------- 298 (530)
Q Consensus 233 --~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~----~v~~~a~~~L~~L~~~~~~-------- 298 (530)
.+...++||+..|.||...-. ..+.|.....+...+. .-......|+..-....++
T Consensus 433 ~~~d~K~VENcvCilRNLSYrl~----------~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~p 502 (717)
T KOG1048|consen 433 SDLDSKSVENCVCILRNLSYRLE----------AEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIP 502 (717)
T ss_pred ccccchhHHHHHHHHhhcCchhh----------hhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCc
Confidence 478899999999999985311 1122222222221110 0011333333333322111
Q ss_pred -------hHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh
Q 009647 299 -------ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 371 (530)
Q Consensus 299 -------~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~ 371 (530)
....+....++..-..+|..+.++.+++.+..+|-|++.+.......+.. ..-....++|+|+.+|...+..
T Consensus 503 e~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~-~v~~kekgl~~l~~ll~~~~~~ 581 (717)
T KOG1048|consen 503 ERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRG-AVFRKEKGLPPLVELLRNDDSD 581 (717)
T ss_pred ccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHh-hhhhhccCccHHHHHHhcCCch
Confidence 11122333345554556666778889999999999999887543322210 0001457899999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC------ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 009647 372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS------PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS 445 (530)
Q Consensus 372 i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~------~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~ 445 (530)
|.+.++.+|.|++.+- ..+.++..++++.|++.|..+ +.++...+|.+|.|+.... .+..+.
T Consensus 582 vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~----------~~nAkd 649 (717)
T KOG1048|consen 582 VVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN----------VLNAKD 649 (717)
T ss_pred HHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh----------HHHHHH
Confidence 9999999999998753 445566788999999999543 2578889999999998632 366788
Q ss_pred HHhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHc
Q 009647 446 LVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLR 479 (530)
Q Consensus 446 l~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~ 479 (530)
+.+.+.++.|+.+..+. +++..+.+-..|..|..
T Consensus 650 l~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 650 LLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999998874 46888888777777754
No 19
>PRK09687 putative lyase; Provisional
Probab=99.66 E-value=1.6e-14 Score=140.25 Aligned_cols=254 Identities=12% Similarity=0.086 Sum_probs=195.4
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
.++.|+.+|.+ ++..++..|+|+|+.+-. ..+++.+..+++++++.++..++|+|+.|-... ..
T Consensus 24 ~~~~L~~~L~d-~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~-- 87 (280)
T PRK09687 24 NDDELFRLLDD-HNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RC-- 87 (280)
T ss_pred cHHHHHHHHhC-CCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cc--
Confidence 57888999987 789999999999998753 235677888899999999999999999986421 11
Q ss_pred hHHHhhchHHHHHHH-hccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647 259 ELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 259 ~~v~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 337 (530)
...++|.|..+ ++++++.|+..++.+|++++...... ...++..+...+ .++++.|+..+.++||++-.
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC
Confidence 23567888877 67788999999999999997532211 112344555556 46788999999999987631
Q ss_pred CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647 338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417 (530)
Q Consensus 338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e 417 (530)
...++.|+.+|.++++.||..|+++|+.+..+++. +++.|+.+|.+.+..|+.+
T Consensus 158 -----------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~ 211 (280)
T PRK09687 158 -----------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIE 211 (280)
T ss_pred -----------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHH
Confidence 24889999999999999999999999999444432 6788999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHH
Q 009647 418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID 497 (530)
Q Consensus 418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~ 497 (530)
|+|+|+.+-. ..++++|++.|..++. ...+.++|..+ .. .-.++
T Consensus 212 A~~aLg~~~~---------------------~~av~~Li~~L~~~~~--~~~a~~ALg~i----g~---------~~a~p 255 (280)
T PRK09687 212 AIIGLALRKD---------------------KRVLSVLIKELKKGTV--GDLIIEAAGEL----GD---------KTLLP 255 (280)
T ss_pred HHHHHHccCC---------------------hhHHHHHHHHHcCCch--HHHHHHHHHhc----CC---------HhHHH
Confidence 9999998621 1367899999988773 44556666655 11 13567
Q ss_pred HHHHHhc-CCcHHHHHHHHHHHHh
Q 009647 498 AMERFQF-HENEDLRNMANGLVDK 520 (530)
Q Consensus 498 ~L~~L~~-~~~~~i~~~A~~il~~ 520 (530)
.|.++.. +++..+..+|.+.|++
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHhc
Confidence 7777775 8899999999888764
No 20
>PRK09687 putative lyase; Provisional
Probab=99.64 E-value=2.3e-14 Score=139.10 Aligned_cols=254 Identities=13% Similarity=0.068 Sum_probs=195.9
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHH
Q 009647 138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL 217 (530)
Q Consensus 138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~ 217 (530)
-++.|..+|.+.+ ..++..|+++|..+.... +++.+..++.+ +++.+|..|+|+|+.|.... ..
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~~---------~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~-~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGGQD---------VFRLAIELCSS-KNPIERDIGADILSQLGMAK-RC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCcch---------HHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCc-cc----
Confidence 4667778887655 556677999998876321 46677788877 78999999999999986422 11
Q ss_pred HhcCChhhhHhh-cCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 009647 218 LSQGALPPLARM-MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS 296 (530)
Q Consensus 218 ~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 296 (530)
...+++.|..+ ++++++.++..++.+|++++... +.+ ...+++.+...+.++++.|+..++++|+++..
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKN-PLY------SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-ccc------chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence 12356777776 56788999999999999997542 111 12456667778888899999999999987753
Q ss_pred chhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHH
Q 009647 297 NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEA 376 (530)
Q Consensus 297 ~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A 376 (530)
..+++.|+.+| .++++.++..|..+||.+..++ ..+++.|+.+|.+.+..||..|
T Consensus 158 ---------~~ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~~---------------~~~~~~L~~~L~D~~~~VR~~A 212 (280)
T PRK09687 158 ---------EAAIPLLINLL-KDPNGDVRNWAAFALNSNKYDN---------------PDIREAFVAMLQDKNEEIRIEA 212 (280)
T ss_pred ---------HHHHHHHHHHh-cCCCHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHhcCCChHHHHHH
Confidence 13578888888 5788899999999999983222 2478899999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHH
Q 009647 377 AWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI 456 (530)
Q Consensus 377 ~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~ 456 (530)
+|+|+.+- ++ .++|.|+..|.+++ ++..|+.+|+++- +| ..++.|.
T Consensus 213 ~~aLg~~~--~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig--------~~-------------~a~p~L~ 258 (280)
T PRK09687 213 IIGLALRK--DK---------RVLSVLIKELKKGT--VGDLIIEAAGELG--------DK-------------TLLPVLD 258 (280)
T ss_pred HHHHHccC--Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcC--------CH-------------hHHHHHH
Confidence 99999872 32 27899999999876 6789999999983 22 2568899
Q ss_pred hhhc-cCCHHHHHHHHHHHHH
Q 009647 457 DLVR-SADIEAARLGLQFMEL 476 (530)
Q Consensus 457 ~lL~-~~d~~i~~~~L~~L~~ 476 (530)
.++. .+|+.++..+.++|..
T Consensus 259 ~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 259 TLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHhhCCChhHHHHHHHHHhc
Confidence 9997 7899999999888763
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-13 Score=132.20 Aligned_cols=326 Identities=15% Similarity=0.125 Sum_probs=235.6
Q ss_pred HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCC------CCHHHHHHHHHHHH
Q 009647 133 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEK------SSSPVAEQCAWALG 204 (530)
Q Consensus 133 ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~------~~~~v~~~a~~~L~ 204 (530)
-|+++.+..|.+..++++ .++..++.++|+|+|..+.+.+.++. |+-..++.+|... .+.+...-+...|.
T Consensus 83 ~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~ 161 (604)
T KOG4500|consen 83 CIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH 161 (604)
T ss_pred hhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence 366778888888887774 55656799999999999999999988 7777777777541 23466777888999
Q ss_pred hhcCCCchhHHHHHhcCChhhhHhhcCC--CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-CCHHH
Q 009647 205 NVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-ADEEL 281 (530)
Q Consensus 205 nla~d~~~~r~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~-~d~~v 281 (530)
|..-++...|..+++.|+++.|...+.- ++....+.+.-.+.||...... -..++.......-.+++++.+ -.+++
T Consensus 162 Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e-~~~~~~~d~sl~~~l~~ll~~~v~~d~ 240 (604)
T KOG4500|consen 162 NYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE-MLYPFCKDCSLVFMLLQLLPSMVREDI 240 (604)
T ss_pred HhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH-hhhhhhccchHHHHHHHHHHHhhccch
Confidence 9999999999999999999999998763 3444444444444444321100 001112234455556666653 35567
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhh-------hHHHHhhhhcCCccccchhcccCCCcc
Q 009647 282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP-------VLRSLGNLVAGDSSTISDVLVPGHGIT 354 (530)
Q Consensus 282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~-------al~~L~nl~~~~~~~~~~~i~~g~~~~ 354 (530)
..-+...|.+.++++.. .-.+.+.|.+..+++++...++..-.+. ++....-+.+|++. -+.+.. +
T Consensus 241 ~eM~feila~~aend~V-kl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~-----~ 313 (604)
T KOG4500|consen 241 DEMIFEILAKAAENDLV-KLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHA-----D 313 (604)
T ss_pred hhHHHHHHHHHhcCcce-eeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhc-----C
Confidence 77788889999985443 3345678999999998864333322222 33333344455543 233333 2
Q ss_pred hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-----CCChhHHHHHHHHHHHhcCCC
Q 009647 355 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-----TSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 355 ~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-----~~~~~v~~eA~~aL~nl~~~~ 429 (530)
..++..+..++.+.+......+..+|+|+++.+ .++..+++.+++..|+.+|. +++..++..++.||.|++..-
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence 358999999999999999999999999998865 77888999999999999983 356789999999999998631
Q ss_pred CCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647 430 TEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR 479 (530)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~ 479 (530)
-....++..|+.+.+.-+|+...|+++..-+..+..+..
T Consensus 393 -----------~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 393 -----------SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred -----------CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 234678899999999999999999998888887776654
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.54 E-value=3.5e-12 Score=123.87 Aligned_cols=321 Identities=16% Similarity=0.191 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHhcCChh---hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhH
Q 009647 153 EQLLEAAWCLTNIAAGKQE---ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA 227 (530)
Q Consensus 153 ~~~~eA~~~L~nia~~~~~---~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~ 227 (530)
.+..+++.|+..++....+ .+...+ +++..|.+..++ ++.++-+|+.++|||||.|+.+.|+.+.+.|+-..++
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivi 135 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVI 135 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehH
Confidence 3456678888888843221 122222 467778888877 6889999999999999999999999999999988888
Q ss_pred hhcCC---C----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--cCCHHHHHHHHHHHHHhhcCCch
Q 009647 228 RMMLP---N----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNV 298 (530)
Q Consensus 228 ~lL~~---~----~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~ 298 (530)
.+|++ . +.+....+...|+|-.-+. +..+..+...|++|.|...+. ..+....+.......+|..--.+
T Consensus 136 d~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~--~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 136 DVLKPYCSKDNPANEEYSAVAFGVLHNYILDS--RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hhhccccccCCccHHHHHHHHHHHHHHhhCCc--HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 88873 1 2466777778888876543 334445557899999998875 34555555555554444431111
Q ss_pred h-HHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-Cc-------
Q 009647 299 A-TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EH------- 369 (530)
Q Consensus 299 ~-~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~------- 369 (530)
+ .....+..+...++++|.....+.+....+..+...+..+....+ +. +.|.+..++.++.. ++
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~-la------~~gl~e~~~~lv~~~k~~t~k~d~ 286 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLS-LA------QNGLLEDSIDLVRNMKDFTKKTDM 286 (604)
T ss_pred hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeee-hh------hcchHHHHHHHHHhcccccchHHH
Confidence 1 122345667777888887666778888888888888765544333 33 35788888888865 21
Q ss_pred HhHHHHHHHHHHHHhcCCHHHHHHHHhCC-cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647 370 RVLKKEAAWVLSNIAAGSVEHKQLIHSSE-ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448 (530)
Q Consensus 370 ~~i~~~A~~~Lsnl~~~~~~~~~~li~~~-~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~ 448 (530)
...-+.++-...-+..|+ +..+.+...+ ++..+...+.+.+.+.+..++.+|+|+++. ..++.++++
T Consensus 287 ~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-----------D~~ci~~v~ 354 (604)
T KOG4500|consen 287 LNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-----------DDICIQLVQ 354 (604)
T ss_pred HHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-----------chHHHHHHH
Confidence 234455555555555665 5566776655 889999999999999999999999999986 368999999
Q ss_pred cCChHHHHhhhcc-----CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHH
Q 009647 449 RGCLSGFIDLVRS-----ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA 498 (530)
Q Consensus 449 ~g~i~~L~~lL~~-----~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~ 498 (530)
+|.+..|+++|.. +|.+.+..++.+|.|+.--.+ ++..+-..|..+.
T Consensus 355 ~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~---nka~~~~aGvtea 406 (604)
T KOG4500|consen 355 KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS---NKAHFAPAGVTEA 406 (604)
T ss_pred HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC---chhhccccchHHH
Confidence 9999999999875 557889999999999874322 2334444554443
No 23
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=1.8e-12 Score=123.25 Aligned_cols=227 Identities=18% Similarity=0.200 Sum_probs=180.7
Q ss_pred hhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc
Q 009647 263 VDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS 341 (530)
Q Consensus 263 ~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~ 341 (530)
..+-++.|+.+|. +.|+.++..+++++++.+. .+.....+.+.|+++.+..+| ..+++.++..|+.+|.|++...+.
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhh
Confidence 5678899999998 5689999999999999876 677888889999999999999 589999999999999999877665
Q ss_pred ccchhcccCCCcchhhHHHHHHHhcc--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647 342 TISDVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA 419 (530)
Q Consensus 342 ~~~~~i~~g~~~~~~~l~~L~~lL~~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~ 419 (530)
+.+ ++ ..++.+...+.+ .+..++..+..+|.|++..+ +....+. +.+|.++.+|.+++..+|..++
T Consensus 88 ~~~--Ik-------~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vL 155 (254)
T PF04826_consen 88 QEQ--IK-------MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVL 155 (254)
T ss_pred HHH--HH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCChHHHHHHH
Confidence 543 22 256666665433 36689999999999997654 3333333 3799999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHccCCCC-------cc-----
Q 009647 420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRGMPNH-------EG----- 486 (530)
Q Consensus 420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~~~~~~-------~~----- 486 (530)
++|.|++.++ ...+.++..+++..|+.++... +.++...+|..++||-...... .+
T Consensus 156 k~L~nLS~np-----------~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L 224 (254)
T PF04826_consen 156 KVLVNLSENP-----------DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSL 224 (254)
T ss_pred HHHHHhccCH-----------HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhH
Confidence 9999999763 5678999999999999999986 5778889999999997544321 11
Q ss_pred hhHHHHhc-hHHHHHHHhcCCcHHHHHHH
Q 009647 487 TKLVERED-GIDAMERFQFHENEDLRNMA 514 (530)
Q Consensus 487 ~~~i~~~g-gl~~L~~L~~~~~~~i~~~A 514 (530)
..++.+.+ .-++|..|..|++++|+++.
T Consensus 225 ~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 225 FSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 13455555 45578889999999999874
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.50 E-value=8.5e-12 Score=140.81 Aligned_cols=272 Identities=18% Similarity=0.150 Sum_probs=209.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh
Q 009647 97 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL 176 (530)
Q Consensus 97 ~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i 176 (530)
..++..|.++|+.++..|+..|.+.- ..+.+|.|+..|..++ +.++..|+.+|..+....+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~------ 684 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP------ 684 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC------
Confidence 34444556999999999999998861 1346889999996554 6677789999988853221
Q ss_pred cCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc
Q 009647 177 LPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP 256 (530)
Q Consensus 177 ~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~ 256 (530)
..+.|...|.+ +++.|+..|+.+|+.+.... ...|+..|.++++.++..|+++|..+- .
T Consensus 685 --~~~~L~~~L~~-~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~--~---- 743 (897)
T PRK13800 685 --PAPALRDHLGS-PDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVD--D---- 743 (897)
T ss_pred --chHHHHHHhcC-CCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhccc--C----
Confidence 24677788887 78999999999999875322 345778889999999999999998752 1
Q ss_pred hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647 257 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 257 ~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~ 336 (530)
.+.|..++.+++++|+..++.+|..+.... ...++.|..++ .++++.++..|+.+|+++-
T Consensus 744 ----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll-~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 744 ----------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALT-GDPDPLVRAAALAALAELG 803 (897)
T ss_pred ----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHh-cCCCHHHHHHHHHHHHhcC
Confidence 123567889999999999999999997532 22367778877 5778999999999999984
Q ss_pred cCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647 337 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 416 (530)
Q Consensus 337 ~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~ 416 (530)
... .+.+.+...|.++++.||..|+++|+.+.. + ..++.|+.+|.+++..||+
T Consensus 804 ~~~----------------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~ 856 (897)
T PRK13800 804 CPP----------------DDVAAATAALRASAWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRK 856 (897)
T ss_pred Ccc----------------hhHHHHHHHhcCCChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHH
Confidence 321 244668888999999999999999998732 1 2568999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHH
Q 009647 417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME 475 (530)
Q Consensus 417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~ 475 (530)
+|+++|..+. +.| + ..+.|...|+..|+.+...+.++|.
T Consensus 857 ~A~~aL~~~~-------~~~----~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 857 AAVLALTRWP-------GDP----A---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHhccC-------CCH----H---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999872 111 1 2466788899999999999988875
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.49 E-value=6.3e-13 Score=112.58 Aligned_cols=117 Identities=31% Similarity=0.538 Sum_probs=106.6
Q ss_pred HHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC
Q 009647 132 TALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE 209 (530)
Q Consensus 132 ~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d 209 (530)
.+++.|++|.++++|..++ +..+..|+++|.+++.+.++....++ +++|.++.+|.+ +++.++..|+|+|+|++.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccC
Confidence 4678999999999999766 56777899999999999777777776 899999999998 7899999999999999998
Q ss_pred CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647 210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 250 (530)
Q Consensus 210 ~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 250 (530)
.+..+..+...|+++.|++++...+..+++.++|+|.+||.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 88888999999999999999999999999999999999973
No 26
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.48 E-value=3e-12 Score=121.65 Aligned_cols=195 Identities=21% Similarity=0.191 Sum_probs=159.3
Q ss_pred HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC
Q 009647 133 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 210 (530)
Q Consensus 133 ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~ 210 (530)
+++++-+..|+.+|+...++.++..|..++.|.+..+. ....+. |+++.+..+|.+ +++.+++.|+|+|.|++.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~- 84 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVN- 84 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCC-
Confidence 46778889999999987778888889999999876543 333333 899999999998 8999999999999999985
Q ss_pred chhHHHHHhcCChhhhHhhcCC--CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHH
Q 009647 211 EEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWV 288 (530)
Q Consensus 211 ~~~r~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~ 288 (530)
.+.+..+-. .++.+++.+.+ -+..++..++.+|.||+...+ ...++ ...+|.++.+|..++..++..++++
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~---~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND---YHHML--ANYIPDLLSLLSSGSEKTKVQVLKV 157 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc---hhhhH--HhhHHHHHHHHHcCChHHHHHHHHH
Confidence 455655543 47777775543 378999999999999986532 23343 4789999999999999999999999
Q ss_pred HHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 289 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 289 L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
|.||+. ++.....++.++++..++.++..+.+.++...++..+.||..+
T Consensus 158 L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 158 LVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999998 6677888889999999999997666788899999999999754
No 27
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.2e-11 Score=117.81 Aligned_cols=354 Identities=13% Similarity=0.162 Sum_probs=248.8
Q ss_pred HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC
Q 009647 131 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE 209 (530)
Q Consensus 131 ~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d 209 (530)
..+..-++|..||..|..++ .++..-....|..++--......... |.|..|++++.. .+++++...+..+-|++.|
T Consensus 298 lKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~-~h~dL~~~tl~LlfNlSFD 375 (791)
T KOG1222|consen 298 LKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI-QHPDLRKATLMLLFNLSFD 375 (791)
T ss_pred HHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC-CCHHHHHHHHHHhhhcccc
Confidence 35677899999999999876 34545677788888744332222222 799999999987 8999999999999999997
Q ss_pred CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHHHHH
Q 009647 210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWV 288 (530)
Q Consensus 210 ~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~ 288 (530)
+ -.|..+++.|.+|.|+.++.+.+.. ..|...+..++-++.. ..+..-..++|.+.+.+- ..+.++-.+.+..
T Consensus 376 ~-glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~---K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ 449 (791)
T KOG1222|consen 376 S-GLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDA---KAMFAYTDCIKLLMKDVLSGTGSEVDLALIAL 449 (791)
T ss_pred c-cccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHH---HHHHHHHHHHHHHHHHHHhcCCceecHHHHHH
Confidence 5 7888999999999999999876422 3345555666544322 223334678888876554 4455665555555
Q ss_pred HHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC
Q 009647 289 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE 368 (530)
Q Consensus 289 L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~ 368 (530)
-.||+- +..+.+.+++...+..|++.-..+.++ -....+.||+.+.......+++ .+.-|...+...
T Consensus 450 ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--------yvgdLa~i~~nd 516 (791)
T KOG1222|consen 450 CINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--------YVGDLAGIAKND 516 (791)
T ss_pred HHHHHh-ccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--------HHHHHHHHhhcC
Confidence 567776 445677778877888777654444442 3456677887776544444553 666777777654
Q ss_pred -cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC--ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 009647 369 -HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS 445 (530)
Q Consensus 369 -~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~--~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~ 445 (530)
+.....++..+++|++...-+..+.+-+.+++|.+-..|..+ ..++.-+.+-+++.++.. ......
T Consensus 517 ~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-----------~~cA~L 585 (791)
T KOG1222|consen 517 NSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-----------LDCARL 585 (791)
T ss_pred chHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-----------hHHHHH
Confidence 457788999999999887666777777889999999988643 346777777777777653 133455
Q ss_pred HHhcCChHHHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHH
Q 009647 446 LVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLV 518 (530)
Q Consensus 446 l~~~g~i~~L~~lL~~--~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il 518 (530)
+...|+|+.|+++|+. .|.+.+...+-.+..++.+. ....-++.+...-..+..|.+..|.+|++-+..-+
T Consensus 586 la~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~L 658 (791)
T KOG1222|consen 586 LAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNAL 658 (791)
T ss_pred hCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHH
Confidence 6688999999999996 45666666666666666541 12234666776667899999999999987654333
No 28
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.44 E-value=6.9e-11 Score=120.88 Aligned_cols=406 Identities=14% Similarity=0.079 Sum_probs=267.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChhhHHhhc--CCc
Q 009647 104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQEETKALL--PAL 180 (530)
Q Consensus 104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v 180 (530)
...|++..+.|.....+++...+ ++...+++.|.+|.|+.+++..+ .++.+.+.+-++...+.++......++ ..+
T Consensus 19 ~~~dpe~lvrai~~~kN~vig~~-~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~l 97 (678)
T KOG1293|consen 19 LHLDPEQLVRAIYMSKNLVIGFT-DNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIEL 97 (678)
T ss_pred hcCCHHHHHHHHHHhcchhhcCC-CccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence 36889888999999999866554 34456899999999999998543 456666777777777888777777777 589
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch--hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE--FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~--~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
|.++++|+.+....+++..+.++.+|-.-++. .........+++.+..++..+.....+.-+...+++|... ...
T Consensus 98 l~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~---~hq 174 (678)
T KOG1293|consen 98 LKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK---DHQ 174 (678)
T ss_pred HHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc---hhh
Confidence 99999998843388999999999999875532 2223333345555555554344444444555555565443 122
Q ss_pred hHHHhhchHHHHHHHhccCCHHHHHHHHHHHH---HhhcCCchhHH----HHHhcCchHH-HHHHHhcCCCccchhhhHH
Q 009647 259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVV---YLSALSNVATS----LLVKSGVLQL-LVERLATSNSLQLLIPVLR 330 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~L~~~~~~~~~----~i~~~g~l~~-Lv~lL~~~~~~~v~~~al~ 330 (530)
-+...+++...+.-++.......+..+..+++ .+..+++.... ...+.|+.++ .+..|...++.+.+..++.
T Consensus 175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~ 254 (678)
T KOG1293|consen 175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE 254 (678)
T ss_pred heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence 23345677777777777777788999999999 66665554433 3345666664 3333335667666777777
Q ss_pred HHhhhhcCCccc-c----chhccc-----------------CC-----------------------Ccchhh--------
Q 009647 331 SLGNLVAGDSST-I----SDVLVP-----------------GH-----------------------GITDQV-------- 357 (530)
Q Consensus 331 ~L~nl~~~~~~~-~----~~~i~~-----------------g~-----------------------~~~~~~-------- 357 (530)
++-++..++-.. + ....+. |. ..+...
T Consensus 255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell 334 (678)
T KOG1293|consen 255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL 334 (678)
T ss_pred HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence 777776554100 0 000000 00 000000
Q ss_pred --------------------------------------------HHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHH
Q 009647 358 --------------------------------------------IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL 393 (530)
Q Consensus 358 --------------------------------------------l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~ 393 (530)
...+..+..+.+...+..||-++-+++..-......
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg 414 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG 414 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111111112334556666776766665432222222
Q ss_pred HHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHH
Q 009647 394 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQF 473 (530)
Q Consensus 394 li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~ 473 (530)
+-...+..+|++++..++..|+..+..+|+|++..- + .....++..|+|..+..++...|+.+...++++
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef-----s-----~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF-----S-----NLKSKFLRNNGIDILESMLTDPDFNSRANSLWV 484 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc-----c-----cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence 334568999999999999999999999999998742 1 245789999999999999999999999999999
Q ss_pred HHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647 474 MELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 524 (530)
Q Consensus 474 L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~ 524 (530)
|.+++-.+++ .....+..-=+-..|..+.++++..|++.+..++..+-..
T Consensus 485 Lr~l~f~~de-~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 485 LRHLMFNCDE-EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHhcchH-HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 9999866543 2222222222345677788999999999999999988654
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=99.44 E-value=2.2e-10 Score=124.26 Aligned_cols=292 Identities=14% Similarity=0.078 Sum_probs=213.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 172 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~ 172 (530)
+.+|...++ +.+...+..|++.+..++..+.+- +.+.+-.+.++.+++ .++++-....+.+++..+++.
T Consensus 34 ~~ELr~~L~---s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pel 102 (746)
T PTZ00429 34 GAELQNDLN---GTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEK 102 (746)
T ss_pred HHHHHHHHH---CCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHH
Confidence 355666554 788888999999988887776543 236777788888765 566666888899998776654
Q ss_pred HHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647 173 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 252 (530)
Q Consensus 173 ~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 252 (530)
.. -++..|.+-+.+ +++.+|-.|+.+|++|-. +..-. -.++++.+.+.++++.++++|+.|+..+.+..
T Consensus 103 al---LaINtl~KDl~d-~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 103 AL---LAVNTFLQDTTN-SSPVVRALAVRTMMCIRV--SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred HH---HHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc--HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence 32 367788888887 799999999999999875 23222 24567888889999999999999999998643
Q ss_pred CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHH
Q 009647 253 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332 (530)
Q Consensus 253 ~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L 332 (530)
|. .+...++++.|..+|.+.|+.|+.+|+.+|..+....+.... ...+.+..|+..|. .-++..+...+.+|
T Consensus 172 -pe----lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~-e~~EW~Qi~IL~lL 243 (746)
T PTZ00429 172 -MQ----LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLP-ECNEWGQLYILELL 243 (746)
T ss_pred -cc----cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhh-cCChHHHHHHHHHH
Confidence 32 333568899999999999999999999999999875443332 33456777777773 55677788888888
Q ss_pred hhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhcCCC
Q 009647 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTSP 411 (530)
Q Consensus 333 ~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~-~~~~~~li~~~~l~~Li~lL~~~~ 411 (530)
......++. .. ..++..+...|+|.++.|.-+|+.++.+++... ++.+..+.. .+.++|+.++ +++
T Consensus 244 ~~y~P~~~~---e~--------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~ 310 (746)
T PTZ00429 244 AAQRPSDKE---SA--------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRD 310 (746)
T ss_pred HhcCCCCcH---HH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCC
Confidence 664322221 11 247888889999999999999999999997542 343333332 2446777764 566
Q ss_pred hhHHHHHHHHHHHhcC
Q 009647 412 FDIKKEVAYVLGNLCV 427 (530)
Q Consensus 412 ~~v~~eA~~aL~nl~~ 427 (530)
+++|.-++..|.-++.
T Consensus 311 ~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 311 AETQYIVCKNIHALLV 326 (746)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 7888888877766654
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.42 E-value=2e-10 Score=123.30 Aligned_cols=327 Identities=16% Similarity=0.147 Sum_probs=237.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647 94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 173 (530)
Q Consensus 94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~ 173 (530)
.++.+.+...+ .+...+.+++..+-.+...+.+. .-+.+..+.++.+.+ ...++-+..++..+...+++..
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~ 77 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELL 77 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHH
Confidence 56677776333 47888999998888876666543 257888889988554 6676768888888888877633
Q ss_pred HhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 174 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 174 ~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
.. ++..+.+-|.+ +++.++..|+.+|++++. ++.... .++.+.+++.++++.+++.|+-++..+.+..
T Consensus 78 ~l---~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~- 145 (526)
T PF01602_consen 78 IL---IINSLQKDLNS-PNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKD- 145 (526)
T ss_dssp HH---HHHHHHHHHCS-SSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-
T ss_pred HH---HHHHHHHhhcC-CCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccC-
Confidence 22 66777778877 889999999999999984 454433 4678899999999999999999999999753
Q ss_pred CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647 254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~ 333 (530)
|. .+... +++.+.+++.++|+.++..|+.++..+ ..++.... -.-...++.|..++ ...++..+..+++.+.
T Consensus 146 p~----~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~ 217 (526)
T PF01602_consen 146 PD----LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLL-SDPDPWLQIKILRLLR 217 (526)
T ss_dssp HC----CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHH-TCCSHHHHHHHHHHHT
T ss_pred HH----HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcc-cccchHHHHHHHHHHH
Confidence 22 33223 799999999999999999999999999 22222211 11123445555555 5788899999999999
Q ss_pred hhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChh
Q 009647 334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD 413 (530)
Q Consensus 334 nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~ 413 (530)
.++...+..... ..+++.+..++.+.++.|..+|+.++..+.... . .-..++++|..++.++++.
T Consensus 218 ~~~~~~~~~~~~---------~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~~~n 282 (526)
T PF01602_consen 218 RYAPMEPEDADK---------NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSSDPN 282 (526)
T ss_dssp TSTSSSHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSSSHH
T ss_pred hcccCChhhhhH---------HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcccch
Confidence 988665443311 248888999999999999999999999886543 3 2223688999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647 414 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR 479 (530)
Q Consensus 414 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~ 479 (530)
++..|+.+|..++... ...+. ..-..+..+..++|..++..+++.|..++.
T Consensus 283 vr~~~L~~L~~l~~~~-------------~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 283 VRYIALDSLSQLAQSN-------------PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HHHHHHHHHHHHCCHC-------------HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hehhHHHHHHHhhccc-------------chhhh--hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 9999999999998631 11222 222223333447889999999999988863
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.6e-09 Score=117.70 Aligned_cols=364 Identities=16% Similarity=0.114 Sum_probs=241.7
Q ss_pred HHHHH-HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC---
Q 009647 94 EELKS-AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK--- 169 (530)
Q Consensus 94 ~~l~~-~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~--- 169 (530)
+++.+ +++..+|+|+..|-.|+.-|..+...-.+....-+ ..+.+.|.+.+...+.+ ++..|+++++.++--.
T Consensus 117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~ 193 (1075)
T KOG2171|consen 117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENN 193 (1075)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccc
Confidence 44444 33566799999999999998887553322211001 12456667777766656 7778999999888433
Q ss_pred hhhHHhhcCCcHHHHHhhcC---CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHH
Q 009647 170 QEETKALLPALPLLIAHLGE---KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWA 244 (530)
Q Consensus 170 ~~~~~~i~~~v~~L~~lL~~---~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~ 244 (530)
..........+|.++..+.. ..+.+....++.+|--++...+.+-.-.+. .+|..-+.+..+. +..++..|+-+
T Consensus 194 ~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ 272 (1075)
T KOG2171|consen 194 KSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEF 272 (1075)
T ss_pred hHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHH
Confidence 33344444678877777654 145566677888888888755544333222 2455556666654 67889999999
Q ss_pred HHHhhcCCCCCchhh-HHHhhchHHHHHHHhccC--C--------------HHHHHHHHHHHHHhhcCCc-hhHHHHHhc
Q 009647 245 LSNLIKGPDPKPATE-LIKVDGLLDAILRHLKRA--D--------------EELTTEVAWVVVYLSALSN-VATSLLVKS 306 (530)
Q Consensus 245 L~nL~~~~~~~~~~~-~v~~~~~l~~L~~lL~~~--d--------------~~v~~~a~~~L~~L~~~~~-~~~~~i~~~ 306 (530)
+..+++. -|.-++. .-.....++.++.++... | +.....|..+|-.++.+=+ ..+ -.
T Consensus 273 ivs~~e~-Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v----~p 347 (1075)
T KOG2171|consen 273 LVSLSEY-APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV----LP 347 (1075)
T ss_pred HHHHHHh-hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe----hH
Confidence 9888876 1221111 001346677777776421 1 0133445556666665311 111 11
Q ss_pred CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647 307 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 307 g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~ 386 (530)
-+++.+-.+| .+.+..-+..++.+|+.++.|..+.....++ .+++..+..|.++++.||..||.+++.++..
T Consensus 348 ~~~~~l~~~l-~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-------~Il~~Vl~~l~DphprVr~AA~naigQ~std 419 (1075)
T KOG2171|consen 348 PLFEALEAML-QSTEWKERHAALLALSVIAEGCSDVMIGNLP-------KILPIVLNGLNDPHPRVRYAALNAIGQMSTD 419 (1075)
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-------HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh
Confidence 2334444555 5888889999999999999998877666654 6899999999999999999999999999988
Q ss_pred CHHHHHHHHhCCcHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHH
Q 009647 387 SVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE 465 (530)
Q Consensus 387 ~~~~~~~li~~~~l~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~ 465 (530)
-...++.-...-++|.|+..+.+ .++.|+..|+.++-|+...+. + ..+..++..+++. .|.-++.++.+.
T Consensus 420 l~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~---~--~~l~pYLd~lm~~----~l~~L~~~~~~~ 490 (1075)
T KOG2171|consen 420 LQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD---K--SILEPYLDGLMEK----KLLLLLQSSKPY 490 (1075)
T ss_pred hcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc---H--HHHHHHHHHHHHH----HHHHHhcCCchh
Confidence 77777777777788899999966 457999999999999987542 1 1111223333322 455566677888
Q ss_pred HHHHHHHHHHHHHccCCC
Q 009647 466 AARLGLQFMELVLRGMPN 483 (530)
Q Consensus 466 i~~~~L~~L~~il~~~~~ 483 (530)
++..++.+|..+...+++
T Consensus 491 v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 491 VQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999876654
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.6e-10 Score=123.64 Aligned_cols=401 Identities=14% Similarity=0.112 Sum_probs=253.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647 94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 173 (530)
Q Consensus 94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~ 173 (530)
.-|..++. ++.|++.+.-|+..+||++++. -+.+..=.++-+-..|+..+.++..+.++..-+.++..++++.-..
T Consensus 39 ~~L~~i~~--~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e- 114 (1075)
T KOG2171|consen 39 PALAHILA--TSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE- 114 (1075)
T ss_pred HHHHHHHh--cCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence 44444444 5889999999999999998762 2233334455566777777777766777777889999998765433
Q ss_pred HhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch-hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647 174 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 252 (530)
Q Consensus 174 ~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 252 (530)
..=+.++.|++..++ +++..||.|+.+|.++...... .+..+. .+.+.+.+.+.+++..++..++.++..++...
T Consensus 115 -~WPell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~ 190 (1075)
T KOG2171|consen 115 -KWPELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL 190 (1075)
T ss_pred -chHHHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHh
Confidence 222466777777776 8899999999999998864321 111111 13344555566665559999999998877543
Q ss_pred C-CCchhhHHHhhchHHHHHHHh----ccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh-cCCCccchh
Q 009647 253 D-PKPATELIKVDGLLDAILRHL----KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA-TSNSLQLLI 326 (530)
Q Consensus 253 ~-~~~~~~~v~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~v~~ 326 (530)
+ .+..... -...+|.++..+ ..+|.+....++.+|-.++...+....-.+. .++........ +.-+..++.
T Consensus 191 ~~~~~~~~~--~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 191 ENNKSEVDK--FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred ccchHHHHH--HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH
Confidence 1 1222222 246667666554 4567777788888888887654433322211 12222222111 011233344
Q ss_pred hhHHHHhhhhcC--------------------------Ccc-------cc------------chhc-----ccC-CCcch
Q 009647 327 PVLRSLGNLVAG--------------------------DSS-------TI------------SDVL-----VPG-HGITD 355 (530)
Q Consensus 327 ~al~~L~nl~~~--------------------------~~~-------~~------------~~~i-----~~g-~~~~~ 355 (530)
.|+.+|..++.. .++ .. ...+ ..| ..+-.
T Consensus 268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p 347 (1075)
T KOG2171|consen 268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP 347 (1075)
T ss_pred HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence 444333333322 100 00 0000 001 11123
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGK 435 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~ 435 (530)
-+++.+-.++.+.+..-|+.|+.+|+-++.|+.+++...++. +++.+++.|.++++.||..|+.||+-++.+-
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl------ 420 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDL------ 420 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh------
Confidence 355666777889999999999999999999998888776664 8999999999999999999999999998642
Q ss_pred chhHHHHHHHHHhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHH-HHHHHhcCCcHHHHHH
Q 009647 436 PKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNM 513 (530)
Q Consensus 436 ~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~-~L~~L~~~~~~~i~~~ 513 (530)
...++.-...-+++.|+..+.+. ++++...+..++-|.+..+........+. +.++ ++..|..++.+.+++.
T Consensus 421 ----~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l~~L~~~~~~~v~e~ 494 (1075)
T KOG2171|consen 421 ----QPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKLLLLLQSSKPYVQEQ 494 (1075)
T ss_pred ----cHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHHHHHhcCCchhHHHH
Confidence 12344555567788999999874 56888888888888887765422111111 2233 5666778888888887
Q ss_pred HHHHH
Q 009647 514 ANGLV 518 (530)
Q Consensus 514 A~~il 518 (530)
+..-|
T Consensus 495 vvtaI 499 (1075)
T KOG2171|consen 495 AVTAI 499 (1075)
T ss_pred HHHHH
Confidence 65443
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.40 E-value=2.4e-12 Score=108.97 Aligned_cols=118 Identities=32% Similarity=0.445 Sum_probs=106.9
Q ss_pred HHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHH
Q 009647 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS 381 (530)
Q Consensus 302 ~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Ls 381 (530)
.+++.|+++.++++|. +++..++..++++|++++...+.....+++ .+++|.+..+|.++++.++..|+|+|+
T Consensus 2 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~------~~~i~~l~~~l~~~~~~v~~~a~~~L~ 74 (120)
T cd00020 2 AVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVE------AGGLPALVQLLKSEDEEVVKAALWALR 74 (120)
T ss_pred hHHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHH------CCChHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3567899999999994 777899999999999999987777777764 479999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 382 NIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 382 nl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
|++.+.+.....+.+.|+++.|++++.+.+.++++.|+|+|+|++
T Consensus 75 ~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 75 NLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 999988788888889999999999999999999999999999997
No 34
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.40 E-value=3e-11 Score=131.62 Aligned_cols=325 Identities=19% Similarity=0.169 Sum_probs=231.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHH----------HHhcC------CCChHHHH-H
Q 009647 95 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV----------QCLAF------GSPDEQLL-E 157 (530)
Q Consensus 95 ~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv----------~lL~~------~~~~~~~~-e 157 (530)
-+++++..-..++.+.+..|=.+|.+++-.+.+... .-.+..+++.|= .+|+. +.+.+-+. .
T Consensus 239 LLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr-~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lca 317 (2195)
T KOG2122|consen 239 LLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR-GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCA 317 (2195)
T ss_pred HHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHH
Confidence 445555433333456677777888888654433211 011122333222 11221 12223344 5
Q ss_pred HHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcC-----------CCCHHHHHHHHHHHHhhcCCCchhHHHHH-hcCCh
Q 009647 158 AAWCLTNIAAGKQEETKALL--PALPLLIAHLGE-----------KSSSPVAEQCAWALGNVAGEGEEFRNVLL-SQGAL 223 (530)
Q Consensus 158 A~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~-----------~~~~~v~~~a~~~L~nla~d~~~~r~~~~-~~g~i 223 (530)
|..+|..++.+. +++.++- |++..+-.||.- ..+..+|..|..+|.||......++..+. ..|.|
T Consensus 318 A~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 318 ALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 778888888764 5666554 655554444421 12356899999999999987666665554 56999
Q ss_pred hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009647 224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSL 302 (530)
Q Consensus 224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~ 302 (530)
..++..|.+...++....+..|.||+-.-+. -..+++.+.|-+..|+.. ++...+..+..++.+|+||+....++...
T Consensus 397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~-nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 397 EAVVAQLISAPEELLQVYASVLRNLSWRADS-NMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhccccccc-cHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 9999999988889999999999999965332 234455556767777654 55666788999999999999877777777
Q ss_pred HHh-cCchHHHHHHHhc---CCCccchhhhHHHHhhhhc---CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHH
Q 009647 303 LVK-SGVLQLLVERLAT---SNSLQLLIPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE 375 (530)
Q Consensus 303 i~~-~g~l~~Lv~lL~~---~~~~~v~~~al~~L~nl~~---~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~ 375 (530)
++. .|++..||..|.. ++...++..+-.+|.|++. ..+...|.+. .++.|..|++.|++..-.|.-+
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR------~~NCLq~LLQ~LKS~SLTiVSN 549 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILR------RHNCLQTLLQHLKSHSLTIVSN 549 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHH------HhhHHHHHHHHhhhcceEEeec
Confidence 776 5899999999952 2345566777777776653 3444445554 4689999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 376 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 376 A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
+|.+|+||.+.+++..+.+++.|+++.|.+++.+.+..+..-++.+|.|+...
T Consensus 550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999764
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.39 E-value=1.3e-10 Score=131.20 Aligned_cols=277 Identities=16% Similarity=0.163 Sum_probs=214.3
Q ss_pred HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647 135 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214 (530)
Q Consensus 135 ~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 214 (530)
+.+.++.|+..|.+++ +.+++.|+.+|..+.. + .++|.|+..|.+ +++.|+..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~--~-------~~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP--P-------GFGPALVAALGD-GAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc--h-------hHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccC---
Confidence 3557789999998655 6787889999988752 1 267889999977 789999999999998853211
Q ss_pred HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
..+.|...|+++++.++..++.+|..+-.+. .+.++..|.++|+.++..++++|..+..
T Consensus 685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~--------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD--------------AALFAAALGDPDHRVRIEAVRALVSVDD 743 (897)
T ss_pred -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC--------------HHHHHHHhcCCCHHHHHHHHHHHhcccC
Confidence 2356778888899999999999998874221 1346678899999999999999987632
Q ss_pred CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647 295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 374 (530)
Q Consensus 295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~ 374 (530)
.+.|..++ .++++.++..+..+|+.+.... ...++.|..++.++++.||.
T Consensus 744 --------------~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~---------------~~~~~~L~~ll~D~d~~VR~ 793 (897)
T PRK13800 744 --------------VESVAGAA-TDENREVRIAVAKGLATLGAGG---------------APAGDAVRALTGDPDPLVRA 793 (897)
T ss_pred --------------cHHHHHHh-cCCCHHHHHHHHHHHHHhcccc---------------chhHHHHHHHhcCCCHHHHH
Confidence 13355566 5788999999999999885432 13578899999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHH
Q 009647 375 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG 454 (530)
Q Consensus 375 ~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~ 454 (530)
.|+.+|+++.... . +++.++..|.++++.||..|+++|..+... ..++.
T Consensus 794 aA~~aLg~~g~~~-~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~---------------------~a~~~ 842 (897)
T PRK13800 794 AALAALAELGCPP-D---------DVAAATAALRASAWQVRQGAARALAGAAAD---------------------VAVPA 842 (897)
T ss_pred HHHHHHHhcCCcc-h---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc---------------------chHHH
Confidence 9999999984321 1 335688889999999999999999887421 13488
Q ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHH
Q 009647 455 FIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD 519 (530)
Q Consensus 455 L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~ 519 (530)
|..+|.++++.+...+..+|..+ . . + ....+.|.....+++.+|+..|...|+
T Consensus 843 L~~~L~D~~~~VR~~A~~aL~~~-~-~-~---------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 843 LVEALTDPHLDVRKAAVLALTRW-P-G-D---------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcc-C-C-C---------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999999999999999998875 1 1 1 123566778889999999999988876
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.30 E-value=6e-10 Score=119.68 Aligned_cols=368 Identities=16% Similarity=0.143 Sum_probs=220.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCc
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PAL 180 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v 180 (530)
.+.++++.+|..|+.++.++....++. +-.. .+|.+..+|...+ +.++..|+.++..+ ..+++....++ ..+
T Consensus 122 ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~-~~~~l~~lL~d~~-~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~ 194 (526)
T PF01602_consen 122 LLSDPSPYVRKKAALALLKIYRKDPDL----VEDE-LIPKLKQLLSDKD-PSVVSAALSLLSEI-KCNDDSYKSLIPKLI 194 (526)
T ss_dssp HHHSSSHHHHHHHHHHHHHHHHHCHCC----HHGG-HHHHHHHHTTHSS-HHHHHHHHHHHHHH-HCTHHHHTTHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHhccCHHH----HHHH-HHHHHhhhccCCc-chhHHHHHHHHHHH-ccCcchhhhhHHHHH
Confidence 334889999999999999986653321 2233 7899999996555 67777899999999 22222211222 455
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL 260 (530)
Q Consensus 181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 260 (530)
+.|.+++.. +++-++..++.+|..++...+...+. ..+++.+..++++.++.++-.++.++..+... . ..
T Consensus 195 ~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~----~--~~ 264 (526)
T PF01602_consen 195 RILCQLLSD-PDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS----P--EL 264 (526)
T ss_dssp HHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----H--HH
T ss_pred HHhhhcccc-cchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc----h--HH
Confidence 666666655 78899999999999999866555422 44567777777777788888888888877632 1 12
Q ss_pred HHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647 261 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 340 (530)
Q Consensus 261 v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 340 (530)
...+++.|.+++.++++.++.-++.+|..++...+.. +. .....+..+..+++..++..++..|.+++....
T Consensus 265 --~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~---v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 265 --LQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA---VF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp --HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH---HG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred --HHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh---hh---hhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence 3577888888888888888888888888887643111 11 112222233235556666666666666664322
Q ss_pred cccchhcc--------cC-------------------CCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHH
Q 009647 341 STISDVLV--------PG-------------------HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL 393 (530)
Q Consensus 341 ~~~~~~i~--------~g-------------------~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~ 393 (530)
.. .+++ .+ .....-.++.++.++......+..++...+.++....++....
T Consensus 337 ~~--~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~ 414 (526)
T PF01602_consen 337 VK--EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK 414 (526)
T ss_dssp HH--HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH
T ss_pred hh--hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH
Confidence 11 0000 00 0000123444444444444444444444444444332222111
Q ss_pred HHhCCcHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHH
Q 009647 394 IHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ 472 (530)
Q Consensus 394 li~~~~l~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~ 472 (530)
++..|++.+.+ .++.++..++|+++..+..... . . .-..++..+.+.....++.++..++.
T Consensus 415 -----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~---~---------~-~~~~~~~~l~~~~~~~~~~vk~~ilt 476 (526)
T PF01602_consen 415 -----ILKKLIELLEDISSPEALAAAIWILGEYGELIEN---T---------E-SAPDILRSLIENFIEESPEVKLQILT 476 (526)
T ss_dssp -----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT---T---------T-HHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc---c---------c-cHHHHHHHHHHhhccccHHHHHHHHH
Confidence 36667777754 6678889999999888643210 0 0 01112344555555566778888888
Q ss_pred HHHHHHccCCCCcchhHHHHhchHHHHHHHhc--CCcHHHHHHHHHHHH
Q 009647 473 FMELVLRGMPNHEGTKLVEREDGIDAMERFQF--HENEDLRNMANGLVD 519 (530)
Q Consensus 473 ~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~--~~~~~i~~~A~~il~ 519 (530)
++..+....+...... ...+.+..+.. +.+.+|+++|...+.
T Consensus 477 ~~~Kl~~~~~~~~~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 477 ALAKLFKRNPENEVQN-----EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHHHHHHSCSTTHHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HHHHHHhhCCchhhHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 8888876654321111 33456677777 889999999987654
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.23 E-value=3.5e-09 Score=108.58 Aligned_cols=370 Identities=14% Similarity=0.093 Sum_probs=223.8
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHcCCCCCcH-HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 009647 93 VEELKSAVAYHGKGA-MQKRVNALRELRRLLSRFEFPPI-ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 170 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d-~~~~~~a~~~lr~lls~~~~~~~-~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~ 170 (530)
...+.++++.+...| ....-..+.++|.+++..+..+. .......+++.+..++.... .....--+.. .+.+++.+
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l-k~~~~l~~~~-~a~~s~~~ 171 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL-KYISRLDVSR-AAHLSSTK 171 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh-hhhhhhhhhh-hccccccc
Confidence 456677777777888 66777778999999886643332 33445667777776666222 1122222233 33344444
Q ss_pred hhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHH---hhcCCCchhHH----HHHhcCChh--hhHhhcCCCChhHHHH
Q 009647 171 EETKALL-PALPLLIAHLGEKSSSPVAEQCAWALG---NVAGEGEEFRN----VLLSQGALP--PLARMMLPNKGSTVRT 240 (530)
Q Consensus 171 ~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~---nla~d~~~~r~----~~~~~g~i~--~L~~lL~~~~~~~~~~ 240 (530)
++..... .+++-=+.++....+..+|.+|..+++ ++...++.... .....|+.+ .+.+++++++.+.+..
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 4433333 344444444433356789999999999 88877665443 344556655 5677888898888888
Q ss_pred HHHHHHHhhcCC---CCCchhhHHHhhc---hHHH-----------------------HHHHhc-------cC-CHHHHH
Q 009647 241 AAWALSNLIKGP---DPKPATELIKVDG---LLDA-----------------------ILRHLK-------RA-DEELTT 283 (530)
Q Consensus 241 a~~~L~nL~~~~---~~~~~~~~v~~~~---~l~~-----------------------L~~lL~-------~~-d~~v~~ 283 (530)
++-++.++++.. +|.+........| .+.+ +.++.. .. ..++..
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence 999999888753 1221111110111 0000 000000 00 012233
Q ss_pred HHHHHHHHhhcCCchhHHHHHhcCchH----------------------HHHHHHhcCCCccchhhhHHHHhhhhcCCcc
Q 009647 284 EVAWVVVYLSALSNVATSLLVKSGVLQ----------------------LLVERLATSNSLQLLIPVLRSLGNLVAGDSS 341 (530)
Q Consensus 284 ~a~~~L~~L~~~~~~~~~~i~~~g~l~----------------------~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~ 341 (530)
..+.+-+.++.+.+.+....+....++ .+.... .+.+..++..||-++-+++..-+.
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~-~~kd~~~~aaa~l~~~s~srsV~a 410 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLP-PIKDHDFVAAALLCLKSFSRSVSA 410 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333322222111111 111111 234555666777776666533221
Q ss_pred ccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHH
Q 009647 342 TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV 421 (530)
Q Consensus 342 ~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~a 421 (530)
++.| .-...+..+|++++..+...|+..+..+|.|+..........++..|++..+..++.+.++.+++.+.|+
T Consensus 411 -----L~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 411 -----LRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWV 484 (678)
T ss_pred -----HHcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence 1111 1134688999999988888999999999999998766778889999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCchhHHHHHHHHHhcCC-hHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGC-LSGFIDLVRSADIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 422 L~nl~~~~~~~~~~~~~~~~~~~~l~~~g~-i~~L~~lL~~~d~~i~~~~L~~L~~il~~~ 481 (530)
|.++..+++ +..+......+ -..+..+...+|+.+++.++..|.|+...+
T Consensus 485 Lr~l~f~~d----------e~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 485 LRHLMFNCD----------EEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHhcch----------HHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 999998753 22333332333 344556677899999999999999997543
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.21 E-value=1.1e-08 Score=103.76 Aligned_cols=331 Identities=15% Similarity=0.130 Sum_probs=225.3
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc-----CChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-----GALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-----g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
.+..|+.+|+..+++++....+..+.-+..+.+..-..+.+. ....+++.+|..++.-+...++..|+.|....
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~- 132 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG- 132 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC-
Confidence 566788888877788999999999999988776655555553 56778888999889999999999999987542
Q ss_pred CCchhhHHHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC-CccchhhhHHH
Q 009647 254 PKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRS 331 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~~v~~~al~~ 331 (530)
+....... ..-.++.+...+.+. +...+.-++.+|..|.. .++....+.+.++++.|+++|.... +.+++-.++-|
T Consensus 133 ~~~~~~~~-l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 133 LAKMEGSD-LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred ccccchhH-HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 21111111 122445566666654 45677777889999987 5566777788889999999996433 45677788888
Q ss_pred HhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHHHHhcCC------HHHHHHHHhCCcHHHHH
Q 009647 332 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGS------VEHKQLIHSSEALALLL 404 (530)
Q Consensus 332 L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Lsnl~~~~------~~~~~~li~~~~l~~Li 404 (530)
+--++...+ ...... ..++++.|+.+++.. ...|.+-++.++.|+...+ ......+++.|+++.+-
T Consensus 211 lWlLSF~~~-~~~~~~------~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~ 283 (429)
T cd00256 211 IWLLTFNPH-AAEVLK------RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQ 283 (429)
T ss_pred HHHHhccHH-HHHhhc------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHH
Confidence 887776554 222222 357999999999754 5689999999999998743 22345567777665554
Q ss_pred HHhc--CCChhHHHHHHHHH-------HHhcC---------------CCCCCCCCchhHHHHHHHHHhc--CChHHHHhh
Q 009647 405 HLLS--TSPFDIKKEVAYVL-------GNLCV---------------SPTEGEGKPKLIQEHLVSLVGR--GCLSGFIDL 458 (530)
Q Consensus 405 ~lL~--~~~~~v~~eA~~aL-------~nl~~---------------~~~~~~~~~~~~~~~~~~l~~~--g~i~~L~~l 458 (530)
.+.. -+|+++....-..- ..++. .+. ..++.=-.++...+-+. .++..|+++
T Consensus 284 ~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~--H~se~FW~EN~~kf~~~~~~llk~L~~i 361 (429)
T cd00256 284 SLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPV--HKSEKFWRENADRLNEKNYELLKILIHL 361 (429)
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCC--CCCchHHHHHHHHHHhcchHHHHHHHHH
Confidence 4442 35665543222211 11111 100 00000001334444433 357889999
Q ss_pred hc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647 459 VR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 459 L~-~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~ 523 (530)
|. +.|+.++.+|+.=|..+.+..|. ++..+++.||=+.+-+|..|+|++|+..|..-++++..
T Consensus 362 L~~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 362 LETSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HhcCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 95 56788887877777777777654 57788999999999999999999999999888887653
No 39
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=4.3e-10 Score=114.79 Aligned_cols=308 Identities=15% Similarity=0.178 Sum_probs=199.1
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc------CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC
Q 009647 137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 210 (530)
Q Consensus 137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~------~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~ 210 (530)
.++|.|+++|.+++.. .+--|..+|..|+.++.+..+.-+ -.+|.|+++.++ +++.+|..|+.|+..+....
T Consensus 128 elLp~L~~~L~s~d~n-~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYN-TCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCccc-ccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecC
Confidence 4789999999977633 223399999999987765544322 279999999998 79999999999999887644
Q ss_pred chhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHH
Q 009647 211 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV 290 (530)
Q Consensus 211 ~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 290 (530)
.+.-..-++ ..+..+..+-.+++++++.+.+.+|..|..-...+..+ ...+++.++++...+.|++|..+||....
T Consensus 206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p---hl~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP---HLDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc---chHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 332222222 24666667777889999999999999998643111111 13578888888888999999999999999
Q ss_pred HhhcCCchhHHHHHh---cCchHHHHHHHhcCCC----------------------------------------------
Q 009647 291 YLSALSNVATSLLVK---SGVLQLLVERLATSNS---------------------------------------------- 321 (530)
Q Consensus 291 ~L~~~~~~~~~~i~~---~g~l~~Lv~lL~~~~~---------------------------------------------- 321 (530)
.+++.+ ....++. ..++|.|++-+..+..
T Consensus 282 a~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe 359 (885)
T KOG2023|consen 282 ALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDE 359 (885)
T ss_pred HHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccc
Confidence 999754 2222222 2344444432211100
Q ss_pred ---------ccchh---hhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH
Q 009647 322 ---------LQLLI---PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE 389 (530)
Q Consensus 322 ---------~~v~~---~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~ 389 (530)
..++. .|+..|+|+.. +.++ .-++|.|-..|.+....+|+.+..+++.|+.|.-.
T Consensus 360 ~DDdD~~~dWNLRkCSAAaLDVLanvf~------~elL-------~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~ 426 (885)
T KOG2023|consen 360 DDDDDAFSDWNLRKCSAAALDVLANVFG------DELL-------PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ 426 (885)
T ss_pred cccccccccccHhhccHHHHHHHHHhhH------HHHH-------HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh
Confidence 01111 12222222211 1111 23556666666788889999999999999987533
Q ss_pred HHHHHHhC--CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHH
Q 009647 390 HKQLIHSS--EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA 467 (530)
Q Consensus 390 ~~~~li~~--~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~ 467 (530)
. ++.+ .++|.|+.+|.+..+-||+.+||+|+..+.--.. ..+ +++.. .++..|+..+-.++.+++
T Consensus 427 g---~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~--~~~---~~~f~-----pvL~~ll~~llD~NK~VQ 493 (885)
T KOG2023|consen 427 G---FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQ--DSR---DEYFK-----PVLEGLLRRLLDSNKKVQ 493 (885)
T ss_pred h---cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhc--CCh---HhhhH-----HHHHHHHHHHhcccHHHH
Confidence 2 3322 3789999999999999999999999988642100 000 12222 134445555555777888
Q ss_pred HHHHHHHHHHH
Q 009647 468 RLGLQFMELVL 478 (530)
Q Consensus 468 ~~~L~~L~~il 478 (530)
+.+..++..+-
T Consensus 494 EAAcsAfAtle 504 (885)
T KOG2023|consen 494 EAACSAFATLE 504 (885)
T ss_pred HHHHHHHHHHH
Confidence 87777665543
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.16 E-value=2.6e-08 Score=100.96 Aligned_cols=323 Identities=14% Similarity=0.120 Sum_probs=215.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH-----cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 009647 94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALK-----AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG 168 (530)
Q Consensus 94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~-----~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~ 168 (530)
.-+..++.. ....+.....+.-+-.+++..+ .....+.+ ......++.+|..++ .-++..|+.+|+.+.+.
T Consensus 56 ~~~l~ll~~--~~~~d~vqyvL~Li~dll~~~~-~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 56 KTFVNLLSQ--IDKDDTVRYVLTLIDDMLQEDD-TRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHhc--cCcHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 344445542 3445556666666677765432 22233333 246777888888655 34556699999999865
Q ss_pred ChhhHHh-hc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHH
Q 009647 169 KQEETKA-LL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWA 244 (530)
Q Consensus 169 ~~~~~~~-i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~ 244 (530)
....... .. -.++.+...|.++.+...+..|+.+|..+.. .+++|..+.+.+++++|+.+|+.. ...++..++.|
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 4422111 11 1334555666654457788899999999998 679999999999999999999853 56788889999
Q ss_pred HHHhhcCCCCCchhhHHHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCC------chhHHHHHhcCchHHHHHHHh
Q 009647 245 LSNLIKGPDPKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALS------NVATSLLVKSGVLQLLVERLA 317 (530)
Q Consensus 245 L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~------~~~~~~i~~~g~l~~Lv~lL~ 317 (530)
++-|+.... ..+.....+.+|.++.++... .+.+..-++.+|.|+...+ ......+++.|+.+.+-.+..
T Consensus 211 lWlLSF~~~---~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~ 287 (429)
T cd00256 211 IWLLTFNPH---AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ 287 (429)
T ss_pred HHHHhccHH---HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence 998886532 233334578999999999854 5678888999999999732 123456677776654444332
Q ss_pred c-CCCccchhhhHHHHhhhhcCC-------ccccchhcccCCC---------------------cchhhHHHHHHHhc-c
Q 009647 318 T-SNSLQLLIPVLRSLGNLVAGD-------SSTISDVLVPGHG---------------------ITDQVIAVLVKCLK-S 367 (530)
Q Consensus 318 ~-~~~~~v~~~al~~L~nl~~~~-------~~~~~~~i~~g~~---------------------~~~~~l~~L~~lL~-~ 367 (530)
+ -.|+++ ...+..|....... +..... +.+|+. -+..++..|+.+|. +
T Consensus 288 rk~~DedL-~edl~~L~e~L~~~~k~ltsfD~Y~~E-l~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s 365 (429)
T cd00256 288 RKYDDEDL-TDDLKFLTEELKNSVQDLSSFDEYKSE-LRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETS 365 (429)
T ss_pred CCCCcHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHH-HhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 1 134443 23333333332111 000000 112210 12457889999994 5
Q ss_pred CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 368 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 368 ~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
.++.+..-||.=|+.++...|.....+-+.|+=..++.++.+++++|+++|+.|+.-+.
T Consensus 366 ~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 366 VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 67888899999999999998888887778899888999999999999999999987764
No 41
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=5.7e-09 Score=108.46 Aligned_cols=357 Identities=16% Similarity=0.195 Sum_probs=225.9
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHcCCC-------------CCcH--HHHHH--cCCHHHHHHHhcCCC-----ChH-HHHH
Q 009647 101 AYHGKGAMQKRVNALRELRRLLSRFE-------------FPPI--ETALK--AGAIPVLVQCLAFGS-----PDE-QLLE 157 (530)
Q Consensus 101 ~~l~s~d~~~~~~a~~~lr~lls~~~-------------~~~~--~~ii~--~g~v~~Lv~lL~~~~-----~~~-~~~e 157 (530)
..++|++.++.++|+.-+......+- -||. ....+ .+++|.|+++|...+ ++. .-+.
T Consensus 266 ~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA 345 (859)
T KOG1241|consen 266 AAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA 345 (859)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence 35579999999999988875533211 1221 11111 478899999997521 111 2244
Q ss_pred HHHHHHHHhcCChhhHHhhcC-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChh
Q 009647 158 AAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS 236 (530)
Q Consensus 158 A~~~L~nia~~~~~~~~~i~~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~ 236 (530)
|.-||.-++. -..+.+++ .+|.+-+.+++ ++..-++.|+.++|.+-.+....+..-+..+++|.++.++.++..-
T Consensus 346 Ag~CL~l~A~---~~~D~Iv~~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 346 AGVCLMLFAQ---CVGDDIVPHVLPFIEENIQN-PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHHHH---HhcccchhhhHHHHHHhcCC-cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence 6667766662 12233443 34444447776 8899999999999999987777777778889999999999988888
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHH----HhcCchHHH
Q 009647 237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL----VKSGVLQLL 312 (530)
Q Consensus 237 ~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i----~~~g~l~~L 312 (530)
+++.+.|+|..++.+- |......+...+.++.++.-|. +.|.+..++||++.+|++.-.+....- ......+.+
T Consensus 422 VkdTaAwtlgrI~d~l-~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i 499 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFL-PEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI 499 (859)
T ss_pred hcchHHHHHHHHHhhc-hhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence 8999999999999764 3322222223455555555553 457899999999999995311110000 000123333
Q ss_pred HHHHhc------CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHH----HHH-----HhccCc----HhHH
Q 009647 313 VERLAT------SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV----LVK-----CLKSEH----RVLK 373 (530)
Q Consensus 313 v~lL~~------~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~----L~~-----lL~~~~----~~i~ 373 (530)
+.-|.. .+....+..|-.+|+.++...+...-.++. ++... |-+ .++..+ ..++
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-------~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQ 572 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-------KLTLVILEKLDQTISSQILSLADRAQLNELQ 572 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-------HHHHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 333321 134568899999999999877654332221 23332 222 333332 3677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647 374 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452 (530)
Q Consensus 374 ~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i 452 (530)
-.-|.+|..+.+.....+..+.+. ++..+++++++ .+.-+..+|..+++.++..- | ....+++ ..+.
T Consensus 573 s~Lc~~Lq~i~rk~~~~~~~~~d~-iM~lflri~~s~~s~~v~e~a~laV~tl~~~L----g-----~~F~kym--~~f~ 640 (859)
T KOG1241|consen 573 SLLCNTLQSIIRKVGSDIREVSDQ-IMGLFLRIFESKRSAVVHEEAFLAVSTLAESL----G-----KGFAKYM--PAFK 640 (859)
T ss_pred HHHHHHHHHHHHHccccchhHHHH-HHHHHHHHHcCCccccchHHHHHHHHHHHHHH----h-----HhHHHHH--HHHH
Confidence 888888888877544444444443 67788899987 45568889999998887642 1 1222333 2355
Q ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCC
Q 009647 453 SGFIDLV-RSADIEAARLGLQFMELVLRGMP 482 (530)
Q Consensus 453 ~~L~~lL-~~~d~~i~~~~L~~L~~il~~~~ 482 (530)
|.|..-| +..+..+...+...+..+++..+
T Consensus 641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~ 671 (859)
T KOG1241|consen 641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALE 671 (859)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 6666667 45677888888888888876554
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.7e-09 Score=110.75 Aligned_cols=257 Identities=18% Similarity=0.151 Sum_probs=201.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647 139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215 (530)
Q Consensus 139 v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 215 (530)
+..|++=|+...++..|.+|+.-|+.+-+...+.+...+ -.||.|+.+|+...+.++.-+|++||.++|.-.|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 455556666554577888877766665544333333344 38999999999877899999999999999998889999
Q ss_pred HHHhcCChhhhHh-hcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 216 VLLSQGALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 216 ~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
.+++.++||.|+. |+.-...++.++++-+|-.|++.+ |+ .+...|++...+..|.--...++..|+.+..|+|.
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~----AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PK----AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cH----HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999996 555678999999999999999875 33 33468999999988877677889999999999997
Q ss_pred C-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC---ccccchhcccCCCcchhhHHHHHHHhccCcH
Q 009647 295 L-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD---SSTISDVLVPGHGITDQVIAVLVKCLKSEHR 370 (530)
Q Consensus 295 ~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~---~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~ 370 (530)
. .++....+.+ ++|.|..+|. +.+.+....++-|+..++.+- ++..+.+. ..+.+....+||.-.+.
T Consensus 324 si~sd~f~~v~e--alPlL~~lLs-~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~------s~dLi~~~~qLlsvt~t 394 (1051)
T KOG0168|consen 324 SIRSDEFHFVME--ALPLLTPLLS-YQDKKPIESVCICLTRIADGFQHGPDKLDQLC------SHDLITNIQQLLSVTPT 394 (1051)
T ss_pred cCCCccchHHHH--HHHHHHHHHh-hccchhHHHHHHHHHHHHHhcccChHHHHHHh------chhHHHHHHHHHhcCcc
Confidence 4 4455566654 5999999994 777788899999999998653 33445554 35799999999876532
Q ss_pred ----hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647 371 ----VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST 409 (530)
Q Consensus 371 ----~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~ 409 (530)
.+....+..++-++.+++.....+...++...|..+|..
T Consensus 395 ~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 395 ILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred cccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 556777888999999988888888899999999988854
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.1e-08 Score=104.80 Aligned_cols=398 Identities=14% Similarity=0.140 Sum_probs=240.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCC--CCcHHHHHHc--CC--HHHHHHHhcCC--------CChHHH-H
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFE--FPPIETALKA--GA--IPVLVQCLAFG--------SPDEQL-L 156 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~--~~~~~~ii~~--g~--v~~Lv~lL~~~--------~~~~~~-~ 156 (530)
.+.++.++++.-.|+|++.+..+...+.++-...+ +.-+...++. .- ...+..+|-.. -.++.+ +
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~y 90 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDY 90 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHH
Confidence 45677788877778999998888888777633221 1111011111 11 11222222110 011121 2
Q ss_pred HHHHHHHHHhcCChhhHHhhcC-----------------CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHh
Q 009647 157 EAAWCLTNIAAGKQEETKALLP-----------------ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS 219 (530)
Q Consensus 157 eA~~~L~nia~~~~~~~~~i~~-----------------~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~ 219 (530)
--..||.++...++ .....+| .+|.|.++|.+ ++...+|-|..+|..||.|+++.-+.-..
T Consensus 91 iKs~~l~~lgd~~~-lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~ 168 (885)
T KOG2023|consen 91 IKSECLHGLGDASP-LIRATVGIVITTIASTGGLQHWPELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVL 168 (885)
T ss_pred HHHHHHhhccCchH-HHHhhhhheeeeeecccccccchhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcc
Confidence 23455555553333 2222221 68899999987 77789999999999999998876554222
Q ss_pred c----CChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009647 220 Q----GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 295 (530)
Q Consensus 220 ~----g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 295 (530)
. -.+|.++.+.+++++.++..|+.|+-.+.-.. +.. -.+....++..+..+-.+++++|+.+.|.+|.+|.+-
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~qa--l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQA--LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-cHH--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 2 25788889999999999999999998776432 222 1333568889999988899999999999999999985
Q ss_pred CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc--cchhcccCCCcchhhHHHHHHHhccCc----
Q 009647 296 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST--ISDVLVPGHGITDQVIAVLVKCLKSEH---- 369 (530)
Q Consensus 296 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~--~~~~i~~g~~~~~~~l~~L~~lL~~~~---- 369 (530)
.++...-- -.++++.++... ...+++|...||...-.++...... .+..+ ..++|.|++=+..++
T Consensus 246 r~dkl~ph-l~~IveyML~~t-qd~dE~VALEACEFwla~aeqpi~~~~L~p~l-------~kliPvLl~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 246 RPDKLVPH-LDNIVEYMLQRT-QDVDENVALEACEFWLALAEQPICKEVLQPYL-------DKLIPVLLSGMVYSDDDII 316 (885)
T ss_pred cHHhcccc-hHHHHHHHHHHc-cCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH-------HHHHHHHHccCccccccHH
Confidence 54433211 135666666655 4567778889999888888665211 11122 245555544221110
Q ss_pred ----------------------------------------------------HhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 009647 370 ----------------------------------------------------RVLKKEAAWVLSNIAAGSVEHKQLIHSS 397 (530)
Q Consensus 370 ----------------------------------------------------~~i~~~A~~~Lsnl~~~~~~~~~~li~~ 397 (530)
..+|+.++.+|--++.--. +.++..
T Consensus 317 LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~~ 393 (885)
T KOG2023|consen 317 LLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLPI 393 (885)
T ss_pred HhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHHHH
Confidence 2344444433333322111 112221
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc--CChHHHHhhhccCCHHHHHHHHHHHH
Q 009647 398 EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR--GCLSGFIDLVRSADIEAARLGLQFME 475 (530)
Q Consensus 398 ~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~--g~i~~L~~lL~~~d~~i~~~~L~~L~ 475 (530)
++|.|-..|.+.+..+|+.++.|++.++.++- +.++.. .+||.|+.+|.++.+-++..+.+.|.
T Consensus 394 -l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-------------~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLs 459 (885)
T KOG2023|consen 394 -LLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-------------QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLS 459 (885)
T ss_pred -HHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-------------hhcccchHHHHHHHHHHhccCccceeeeeeeeHh
Confidence 45666666778888999999999999987541 222222 36899999999999988888888887
Q ss_pred HHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647 476 LVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 476 ~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f 522 (530)
..-...-.....+.+.. .+.-|.+-.-+.|+.|++.|+....++-
T Consensus 460 Rys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 460 RYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred hhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 65322111111122211 1222222345789999999988777653
No 44
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.02 E-value=8.7e-11 Score=94.46 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=50.3
Q ss_pred HHhhh-cCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHHh
Q 009647 25 VIWFL-VGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAY 102 (530)
Q Consensus 25 ~~~~~-~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 102 (530)
.||+. +|++..|||| ++.|+|||+||||+|.|||+... ...+..+.... . +. ..........++.++.+
T Consensus 12 ~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~--~~~~~~~~~~~-~-~~-----~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 12 SYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINM--ADEESSSEESE-S-DQ-----NSSAQQLNEELPEMVAG 82 (97)
T ss_dssp GSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT--------------------------TCCCCS--HHHHHHHHH
T ss_pred HHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--Ccccccccccc-c-cc-----cccccccccccHHHHHh
Confidence 79944 7998888888 79999999999999999997421 11111000000 0 00 00011123566666777
Q ss_pred cCCCCHHHHHHHHHH
Q 009647 103 HGKGAMQKRVNALRE 117 (530)
Q Consensus 103 l~s~d~~~~~~a~~~ 117 (530)
++|+|+..++.|++.
T Consensus 83 v~S~d~~~ql~Atq~ 97 (97)
T PF01749_consen 83 VNSDDPEVQLEATQQ 97 (97)
T ss_dssp HTSSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHhhCC
Confidence 789999999999863
No 45
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.02 E-value=1.5e-08 Score=100.98 Aligned_cols=232 Identities=17% Similarity=0.198 Sum_probs=167.0
Q ss_pred HHHHHHHhc--cCCHHHHHHHHHHHHHhhcCCchhHHHHHh------cCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 267 LDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVK------SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 267 l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~------~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
...++.+|+ .++++++..++..+..+...++...+.+.. ......+++++ .+++..+...|++.|+.+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 334445554 367899999999999999877777766654 23677888877 577888999999999999988
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhcc----CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh------c
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLKS----EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL------S 408 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~----~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL------~ 408 (530)
.+....... .+.++.++.++.+ .+..++..|+.+++++.. .++.+..+.+.++++.+..++ .
T Consensus 136 ~~~~~~~~~-------~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~ 207 (312)
T PF03224_consen 136 GPKRSEKLV-------KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNS 207 (312)
T ss_dssp TTT--HHHH-------HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH------
T ss_pred CCccccchH-------HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccC
Confidence 766544321 1467777777654 455778999999999975 568888899999999999999 2
Q ss_pred -CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcc
Q 009647 409 -TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEG 486 (530)
Q Consensus 409 -~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~ 486 (530)
..+..++.+++.+++-++.. .+.+..+.+.++++.|+++++. ...++++.++.+|.|++...+.. .
T Consensus 208 ~~~~~Ql~Y~~ll~lWlLSF~-----------~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~-~ 275 (312)
T PF03224_consen 208 NSSGIQLQYQALLCLWLLSFE-----------PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS-N 275 (312)
T ss_dssp ---HHHHHHHHHHHHHHHTTS-----------HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT-H
T ss_pred CCCchhHHHHHHHHHHHHhcC-----------HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH-H
Confidence 23467889999999999875 3567889999999999999986 56889999999999999765542 5
Q ss_pred hhHHHHhchHHHHHHHhcC--CcHHHHHHHHHHHH
Q 009647 487 TKLVEREDGIDAMERFQFH--ENEDLRNMANGLVD 519 (530)
Q Consensus 487 ~~~i~~~ggl~~L~~L~~~--~~~~i~~~A~~il~ 519 (530)
...+-.+|++..++.|+.. .++|+++--..+-+
T Consensus 276 ~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 276 IELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp HHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 5667789999999999765 48888876555443
No 46
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2e-08 Score=105.25 Aligned_cols=337 Identities=18% Similarity=0.223 Sum_probs=205.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHH
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLI 184 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~ 184 (530)
+.-...+..|++.+...+..+.+- +++.|-++.+....+ -+++.-.-..+.|.+.+.++.. .++++.++
T Consensus 24 s~~~~kr~~a~kkvIa~Mt~G~Dv-------SslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~a---~~avnt~~ 92 (734)
T KOG1061|consen 24 SQSKEKRKDAVKKVIAYMTVGKDV-------SSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDLA---ILAVNTFL 92 (734)
T ss_pred hhhhhhHHHHHHHHHhcCccCcch-------HhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchHH---Hhhhhhhh
Confidence 333467788887666555555322 568899999998776 5666668889999998877543 34777887
Q ss_pred HhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhh
Q 009647 185 AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVD 264 (530)
Q Consensus 185 ~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~ 264 (530)
+=..+ +++.+|.-|+..++.+-.+. +..-+..||.+.+++.++.+++.++-+..++-..+ .+.+...
T Consensus 93 kD~~d-~np~iR~lAlrtm~~l~v~~-------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-----~~~~~~~ 159 (734)
T KOG1061|consen 93 KDCED-PNPLIRALALRTMGCLRVDK-------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-----PDLVEDS 159 (734)
T ss_pred ccCCC-CCHHHHHHHhhceeeEeehH-------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-----hhhcccc
Confidence 77766 78999999999999876532 22335789999999999999999999999997543 2345578
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccc
Q 009647 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS 344 (530)
Q Consensus 265 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~ 344 (530)
|+++.|-.++.++++.|..+|+.+|..+...+++.....+....+..++..+. .-++.-+...+.++.+....++...+
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~-ec~EW~qi~IL~~l~~y~p~d~~ea~ 238 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALN-ECTEWGQIFILDCLAEYVPKDSREAE 238 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH-HhhhhhHHHHHHHHHhcCCCCchhHH
Confidence 99999999999999999999999999999755421111111112222222221 11222223333333333222221111
Q ss_pred hhccc-------C-CCc----------------------chhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHH---
Q 009647 345 DVLVP-------G-HGI----------------------TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK--- 391 (530)
Q Consensus 345 ~~i~~-------g-~~~----------------------~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~--- 391 (530)
.+++. . ..+ -...-++|+.++.+.. .++..|..-+.-+....++..
T Consensus 239 ~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~ 317 (734)
T KOG1061|consen 239 DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVE 317 (734)
T ss_pred HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhH
Confidence 00000 0 000 0112223333333332 333333333332222222211
Q ss_pred -------------------HHHH----hCC---cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 009647 392 -------------------QLIH----SSE---ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS 445 (530)
Q Consensus 392 -------------------~~li----~~~---~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~ 445 (530)
+.+. +++ ++.-|...-..-|.+.-++|++||++++... ++
T Consensus 318 ~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~-----------e~--- 383 (734)
T KOG1061|consen 318 IKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA-----------EQ--- 383 (734)
T ss_pred hHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh-----------hh---
Confidence 1110 111 2333334445567788899999999998632 11
Q ss_pred HHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC
Q 009647 446 LVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN 483 (530)
Q Consensus 446 l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~ 483 (530)
..++++.|+++++.+-..++..+...+..+++.+++
T Consensus 384 --~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 384 --SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred --hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence 178999999999988778888888889999998876
No 47
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=5.8e-07 Score=89.22 Aligned_cols=352 Identities=14% Similarity=0.126 Sum_probs=230.7
Q ss_pred HHHHHHH-HhcCCCCHHHHHHHHHHHHHHHcC-CCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 94 EELKSAV-AYHGKGAMQKRVNALRELRRLLSR-FEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 94 ~~l~~~l-~~l~s~d~~~~~~a~~~lr~lls~-~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
..++.++ +.+..++.+.......-|.++ |. .++. ..+.+.|+|.+|+.++...+ +++.......+.|++.++.-
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKL-SIf~eNK--~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD~gl 378 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKL-SIFDENK--IVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFDSGL 378 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHh-hhhccch--HHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccccccc
Confidence 3444433 445566766666666666666 54 4333 56888999999999999877 55656688999999987764
Q ss_pred hHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhh
Q 009647 172 ETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLI 249 (530)
Q Consensus 172 ~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~ 249 (530)
..+.+. |.+|.+..+|.+.. -..-|+..|..++.| ...+..+.....|+.+++.+- ..+.++-.......-|||
T Consensus 379 r~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ 454 (791)
T KOG1222|consen 379 RPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLC 454 (791)
T ss_pred cHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 445554 78999999997633 234577778888875 577777878888999987554 445555444554556888
Q ss_pred cCCCCCchhhHHHhhchHHHHHHH-hccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647 250 KGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328 (530)
Q Consensus 250 ~~~~~~~~~~~v~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a 328 (530)
-.+.+ ..++.+..++..|... +...|+-+ ...+.+++.........+++ .+..|...+...++++....+
T Consensus 455 lnkRN---aQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EC 525 (791)
T KOG1222|consen 455 LNKRN---AQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLEC 525 (791)
T ss_pred hcccc---ceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHH
Confidence 65422 2244455667766643 44444322 23456777644333333433 356666666555667777899
Q ss_pred HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH
Q 009647 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL 406 (530)
Q Consensus 329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l 406 (530)
+.+++|+.-.+-+..+.+ + ..+.+|.+...|..+ ...+.-+...+++.++.. ......+..+++++.|+++
T Consensus 526 lGtlanL~v~dldw~~il-q-----~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieL 598 (791)
T KOG1222|consen 526 LGTLANLKVTDLDWAKIL-Q-----SENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIEL 598 (791)
T ss_pred HHHHhhcccCCCCHHHHH-h-----hccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHH
Confidence 999999986655544433 3 357899999988765 235667777777776543 2333334467999999999
Q ss_pred hcC--CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc-CChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647 407 LST--SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR-GCLSGFIDLVRSADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 407 L~~--~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~-g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~ 480 (530)
|+. .+.+.....+++...+..+. ...+.+++. ..-..|+++....+.++..+|=.+|.-|...
T Consensus 599 L~a~QeDDEfV~QiiyVF~Q~l~He-----------~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 599 LQACQEDDEFVVQIIYVFLQFLKHE-----------LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHH-----------HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 964 23445555667776666531 234566654 4445699999999998888777777666543
No 48
>PTZ00429 beta-adaptin; Provisional
Probab=98.97 E-value=1.2e-06 Score=95.51 Aligned_cols=359 Identities=16% Similarity=0.086 Sum_probs=207.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcH
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP 181 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~ 181 (530)
.+.+.++.++..|+-++.++.... | +.+.+.|.++.|.++|...+ +.++..|+.+|..+....+.......+.+.
T Consensus 148 ~L~D~~pYVRKtAalai~Kly~~~--p--elv~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~ 222 (746)
T PTZ00429 148 AVADPDPYVRKTAAMGLGKLFHDD--M--QLFYQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDYGSEKIESSNEWVN 222 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhC--c--ccccccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 556788889998888888875433 3 22446788899999887544 567778889999997655433323235666
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 009647 182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI 261 (530)
Q Consensus 182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v 261 (530)
.|+..|.. -++..+-..+.+|......+.. . ...++..+...|++.++.++-.|+.++.++....++.. ...+
T Consensus 223 ~Ll~~L~e-~~EW~Qi~IL~lL~~y~P~~~~---e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~-~~~~ 295 (746)
T PTZ00429 223 RLVYHLPE-CNEWGQLYILELLAAQRPSDKE---S--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQEL-IERC 295 (746)
T ss_pred HHHHHhhc-CChHHHHHHHHHHHhcCCCCcH---H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHH-HHHH
Confidence 67777765 4566666777777654322211 1 12456777888888899999999999998874321111 1111
Q ss_pred HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHH-------------------------HHhc----CchHHH
Q 009647 262 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL-------------------------LVKS----GVLQLL 312 (530)
Q Consensus 262 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~-------------------------i~~~----g~l~~L 312 (530)
...+-+.++.++ +.+++++.-++..+..+....+..... +.+. .++..|
T Consensus 296 -~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL 373 (746)
T PTZ00429 296 -TVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKEL 373 (746)
T ss_pred -HHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHH
Confidence 112334555553 455666666665555554332211100 0001 122333
Q ss_pred HHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHH
Q 009647 313 VERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 392 (530)
Q Consensus 313 v~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~ 392 (530)
.++. ...+.++...+++++|+++..-+... ...+..|+.++..... +..+++-++.+|....+...
T Consensus 374 ~eYa-~d~D~ef~r~aIrAIg~lA~k~~~~a-----------~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~- 439 (746)
T PTZ00429 374 AEYA-SGVDMVFVVEVVRAIASLAIKVDSVA-----------PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL- 439 (746)
T ss_pred HHHh-hcCCHHHHHHHHHHHHHHHHhChHHH-----------HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH-
Confidence 3333 24566777788888888875433221 2466777777765433 45567778888866554321
Q ss_pred HHHhCCcHHHHHHHh---cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHH
Q 009647 393 LIHSSEALALLLHLL---STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARL 469 (530)
Q Consensus 393 ~li~~~~l~~Li~lL---~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~ 469 (530)
+++.|+..+ .-.+++.+...+|.|+..+..- +... .++..+++-+...++.++..
T Consensus 440 ------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I-----------~~a~-----~~L~~~i~~f~~E~~~Vqlq 497 (746)
T PTZ00429 440 ------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI-----------ENGK-----DIIQRFIDTIMEHEQRVQLA 497 (746)
T ss_pred ------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH-----------hhHH-----HHHHHHHhhhccCCHHHHHH
Confidence 344454433 2345677777799998886421 1111 12333344334466778878
Q ss_pred HHHHHHHHHccCCCCcchhHHHHhchHHHHHHH-hcCCcHHHHHHHHH
Q 009647 470 GLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENEDLRNMANG 516 (530)
Q Consensus 470 ~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L-~~~~~~~i~~~A~~ 516 (530)
.|.+...++-..+. .....+ ...|..+ .+..|++|+.+|.-
T Consensus 498 lLta~vKlfl~~p~-~~~~~l-----~~vL~~~t~~~~d~DVRDRA~~ 539 (746)
T PTZ00429 498 ILSAAVKMFLRDPQ-GMEPQL-----NRVLETVTTHSDDPDVRDRAFA 539 (746)
T ss_pred HHHHHHHHHhcCcH-HHHHHH-----HHHHHHHHhcCCChhHHHHHHH
Confidence 88888877755432 111111 2234444 34678899999964
No 49
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.8e-06 Score=90.48 Aligned_cols=324 Identities=16% Similarity=0.229 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCC
Q 009647 91 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-SPDEQLLEAAWCLTNIAAGK 169 (530)
Q Consensus 91 ~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~eA~~~L~nia~~~ 169 (530)
++++.|+..+. ++.-.+.+..|+..|..+ ++. ...-+.+-++++|++.|+.+ .++++...|..++.++.+.+
T Consensus 22 ETI~kLcDRve--ssTL~eDRR~A~rgLKa~-srk----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 22 ETIEKLCDRVE--SSTLLEDRRDAVRGLKAF-SRK----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred hHHHHHHHHHh--hccchhhHHHHHHHHHHH-HHH----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 46788888887 577789999999999887 332 24456677899999999854 34566567888888887655
Q ss_pred h------hh----------HHhhc---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC-CchhHHHHHhc-CChhhhHh
Q 009647 170 Q------EE----------TKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLLSQ-GALPPLAR 228 (530)
Q Consensus 170 ~------~~----------~~~i~---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~~~-g~i~~L~~ 228 (530)
. +. ++.++ +.|..++.++.. .+-.||..++-.|.++... ..+.++.++.. -+|..|+.
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 2 11 11222 478888888877 7889999999999998764 45788888876 58999999
Q ss_pred hcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCC---H-HHHHHHHHHHHHhhcCCchhHHHHH
Q 009647 229 MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRAD---E-ELTTEVAWVVVYLSALSNVATSLLV 304 (530)
Q Consensus 229 lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d---~-~v~~~a~~~L~~L~~~~~~~~~~i~ 304 (530)
+|.+....++..++..|+.|.++. +.. ..+|.-..+...|+.++..+. . -|..+|+..|.||..++..+...+.
T Consensus 174 lL~DsrE~IRNe~iLlL~eL~k~n-~~I-QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr 251 (970)
T KOG0946|consen 174 LLRDSREPIRNEAILLLSELVKDN-SSI-QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR 251 (970)
T ss_pred HHhhhhhhhchhHHHHHHHHHccC-chH-HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh
Confidence 999998899999999999999874 333 345556788899999998542 2 4788999999999998888888999
Q ss_pred hcCchHHHHHHHhc--CCCccc----------hhhhHHHHhhhhcCCcc-----ccchhcccCCCcchhhHHHHHHHhcc
Q 009647 305 KSGVLQLLVERLAT--SNSLQL----------LIPVLRSLGNLVAGDSS-----TISDVLVPGHGITDQVIAVLVKCLKS 367 (530)
Q Consensus 305 ~~g~l~~Lv~lL~~--~~~~~v----------~~~al~~L~nl~~~~~~-----~~~~~i~~g~~~~~~~l~~L~~lL~~ 367 (530)
+.+.+|+|..+|.. ..+.++ ...++.++.-++..... +.|.++. ..+++..|..++.|
T Consensus 252 E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~-----ss~ll~~Lc~il~~ 326 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALV-----SSHLLDVLCTILMH 326 (970)
T ss_pred ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-----HcchHHHHHHHHcC
Confidence 99999999988741 122111 23567777777654322 2234554 35799999999988
Q ss_pred C--cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCc--H----HHH---HHHh--cCCChhHHHHHHHHHHHhcCCC
Q 009647 368 E--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA--L----ALL---LHLL--STSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 368 ~--~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~--l----~~L---i~lL--~~~~~~v~~eA~~aL~nl~~~~ 429 (530)
+ ..+|+.++..++++..+|+...-..+.+..+ . |.+ ...+ ....+..|..+.+++..+....
T Consensus 327 ~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 327 PGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred CCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 7 3589999999999999998655555543211 1 222 2222 4466889999999998777643
No 50
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.81 E-value=7.2e-08 Score=96.01 Aligned_cols=229 Identities=18% Similarity=0.200 Sum_probs=156.5
Q ss_pred CcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCchhHHHHHh------cCChhhhHhhcCCCChhHHHHHHHHHHHhhcC
Q 009647 179 ALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLS------QGALPPLARMMLPNKGSTVRTAAWALSNLIKG 251 (530)
Q Consensus 179 ~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~------~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~ 251 (530)
.+..++.+|+.. +++++....+-.+..+..+++...+.+.. .....++++++.++|..+...++..|+.|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 455555666554 68999999999999999988877776665 23688899999999999999999999999866
Q ss_pred CCCCchhhHHHhhchHHHHHHHhcc----CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHH------hcCCC
Q 009647 252 PDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL------ATSNS 321 (530)
Q Consensus 252 ~~~~~~~~~v~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL------~~~~~ 321 (530)
.+... ... ..+.++.++..+.+ ++.+++.-++.+|.+|.. .+++...+.+.|+++.+..+| ....+
T Consensus 136 ~~~~~-~~~--~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 136 GPKRS-EKL--VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp TTT---HHH--HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred CCccc-cch--HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 43222 211 24667777776653 456778999999999997 677888888999999999998 33345
Q ss_pred ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHHHHhcCCHH-HHHHHHhCCc
Q 009647 322 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVE-HKQLIHSSEA 399 (530)
Q Consensus 322 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~~-~~~~li~~~~ 399 (530)
.+++-.++.|+--++... .....+.. .++++.|+.+++. .+..|.+-++.++.|+....+. .+..++..|+
T Consensus 212 ~Ql~Y~~ll~lWlLSF~~-~~~~~~~~------~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~ 284 (312)
T PF03224_consen 212 IQLQYQALLCLWLLSFEP-EIAEELNK------KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL 284 (312)
T ss_dssp HHHHHHHHHHHHHHTTSH-HHHHHHHT------TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHhcCH-HHHHHHhc------cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH
Confidence 566778888888776544 44444543 4599999999965 4679999999999999887644 6777888877
Q ss_pred HHHHHHHhc--CCChhHHHHH
Q 009647 400 LALLLHLLS--TSPFDIKKEV 418 (530)
Q Consensus 400 l~~Li~lL~--~~~~~v~~eA 418 (530)
++.+-.+.. .+|+++....
T Consensus 285 l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 285 LKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHH
Confidence 776666653 3677765443
No 51
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=9.8e-06 Score=84.40 Aligned_cols=147 Identities=11% Similarity=0.135 Sum_probs=85.7
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHH--hhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALG--NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP 256 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~--nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~ 256 (530)
.+|++..++.+.....+...|+.++- |+..+.++.-..+. -.+..|--++.++|+.+..-++.+++.+...+ |
T Consensus 257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktH-p-- 331 (877)
T KOG1059|consen 257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH-P-- 331 (877)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC-H--
Confidence 45566666655333445555555442 33322211111111 12445556667778888888888888887532 2
Q ss_pred hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647 257 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 257 ~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~ 336 (530)
.. +...-..++++|.+.|+.++..|+-.|.-+.. .+++..+ +..|+..+..+.....+...+.-+-.||
T Consensus 332 --~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 332 --KA--VQAHKDLILRCLDDKDESIRLRALDLLYGMVS--KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred --HH--HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 23 23556778899999999999999999998885 3444433 4556665544444455555555555555
Q ss_pred cCCcc
Q 009647 337 AGDSS 341 (530)
Q Consensus 337 ~~~~~ 341 (530)
+.+..
T Consensus 401 S~snY 405 (877)
T KOG1059|consen 401 SQSNY 405 (877)
T ss_pred hhhhh
Confidence 55443
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.9e-07 Score=87.68 Aligned_cols=185 Identities=17% Similarity=0.181 Sum_probs=153.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchh
Q 009647 277 ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 356 (530)
Q Consensus 277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~ 356 (530)
.+.+-+..|+--|.+++. +-++...++..|++..++.++ .+.+..++..|.++||..+..++.....+++ .|
T Consensus 95 ~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E------~~ 166 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYL-ENSDAELRELAARVIGTAVQNNPKSQEQVIE------LG 166 (342)
T ss_pred CCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH------cc
Confidence 356778888888888887 445666788899999999988 6889999999999999999999887777775 46
Q ss_pred hHHHHHHHhccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC--CChhHHHHHHHHHHHhcCCCCCCC
Q 009647 357 VIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNLCVSPTEGE 433 (530)
Q Consensus 357 ~l~~L~~lL~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~--~~~~v~~eA~~aL~nl~~~~~~~~ 433 (530)
+++.|+..|.+.++ .+|..|.++++++....+.....+...++...|..+|++ .+...+..|+..+.++....
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~---- 242 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED---- 242 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh----
Confidence 99999999987655 788999999999999998989999998889999999988 66788899999999998642
Q ss_pred CCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647 434 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR 479 (530)
Q Consensus 434 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~ 479 (530)
......+...+.-..+.++..+.+.++...++.++...+.
T Consensus 243 ------~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 243 ------KSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred ------hhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 1223345566777788888888888888888887776664
No 53
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.9e-07 Score=87.64 Aligned_cols=186 Identities=15% Similarity=0.192 Sum_probs=150.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcH
Q 009647 104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALP 181 (530)
Q Consensus 104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~ 181 (530)
.+.+++.+..|+..|..++..-++. ..++..|++++++.+|.+++ ..++..|+|+|+..+.+++.....++ ++.+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnA--ndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNA--NDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhH--HhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 4678999999999999987654443 56889999999999988765 56766699999999999998888887 7999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC--CChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647 182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATE 259 (530)
Q Consensus 182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~ 259 (530)
.|+..|++..+..++..|+++++++....+...+.++..++...|..++++ .+..+++.++..+++|...+. ...+
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~--s~~d 247 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK--SDED 247 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh--hhhh
Confidence 999999987778899999999999999999999999999999999999998 568889999999999987642 2233
Q ss_pred HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
++...++...+..+....+.++...+..++..+..
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 44344555556666666677777777666655543
No 54
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2e-06 Score=90.13 Aligned_cols=285 Identities=15% Similarity=0.115 Sum_probs=212.5
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcC-CCCHHHHHHHHHHHHhhcCCCc--
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGE-- 211 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~-~~~~~v~~~a~~~L~nla~d~~-- 211 (530)
+.-||.|+.-+.+..-.+.++.|+..|..+|. ..+..|. .++++|++.|.. ..++++...++-++.++....+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 34678888888766666778899999999995 3455554 589999999976 3679999999999999986432
Q ss_pred ----h----------hHHH-HHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc
Q 009647 212 ----E----------FRNV-LLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR 276 (530)
Q Consensus 212 ----~----------~r~~-~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~ 276 (530)
. +.+. +...+.|..|+..+...|..++..++-.|+++.+...++....++....++..|+.+|.+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 2222 345688999999999999999999999999998776444333344456789999999998
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC---CccchhhhHHHHhhhhcCCccccchhcccCCCc
Q 009647 277 ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGI 353 (530)
Q Consensus 277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~ 353 (530)
.-+.++-+++..|..|+.+++...+.+.-.+++.+|..++...+ ..-|...|+..|-|+...+....+.+.+
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE----- 252 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE----- 252 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc-----
Confidence 88899999999999999866655555555788999999886433 2245679999999999887666555553
Q ss_pred chhhHHHHHHHhcc---Cc--------HhH--HHHHHHHHHHHhcC-C----HHHHH-HHHhCCcHHHHHHHhcCC--Ch
Q 009647 354 TDQVIAVLVKCLKS---EH--------RVL--KKEAAWVLSNIAAG-S----VEHKQ-LIHSSEALALLLHLLSTS--PF 412 (530)
Q Consensus 354 ~~~~l~~L~~lL~~---~~--------~~i--~~~A~~~Lsnl~~~-~----~~~~~-~li~~~~l~~Li~lL~~~--~~ 412 (530)
.+.+|.|..+|.- .+ ..| ...++.+++-++.. + ..+.+ .+...+++..|..++.++ ..
T Consensus 253 -~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~ 331 (970)
T KOG0946|consen 253 -GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA 331 (970)
T ss_pred -cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence 4799999987743 22 111 24566667766542 1 23443 456778999999998766 46
Q ss_pred hHHHHHHHHHHHhcCCC
Q 009647 413 DIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 413 ~v~~eA~~aL~nl~~~~ 429 (530)
+|+.++.-++++.+++.
T Consensus 332 dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 332 DILTESIITVAEVVRGN 348 (970)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 89999999999998864
No 55
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.76 E-value=4.7e-06 Score=86.80 Aligned_cols=309 Identities=14% Similarity=0.089 Sum_probs=190.5
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH--HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC-C
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR--NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP-K 255 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r--~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~-~ 255 (530)
++...+..|.+ .++.++.+|+-.++.|+.--..+. ..+-..|. .|...|...+++++-..+.++..++.-..- +
T Consensus 800 i~stiL~rLnn-ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNN-KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 45566777877 789999999999999885222221 11222232 355677777888877666666665532100 0
Q ss_pred chhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhh
Q 009647 256 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 335 (530)
Q Consensus 256 ~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl 335 (530)
-.+ - ..+++|.|..+|.+....++.++...++.+++..++++..----.++--|+++|. +-+.+++..|..++|.|
T Consensus 877 m~p-P--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk-ahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 877 MTP-P--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK-AHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred cCC-C--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHH
Confidence 001 1 4689999999999999999999999999999987776543222345566788884 55668888999999988
Q ss_pred hcCCccc--cchhccc--------------------CCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHH
Q 009647 336 VAGDSST--ISDVLVP--------------------GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL 393 (530)
Q Consensus 336 ~~~~~~~--~~~~i~~--------------------g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~ 393 (530)
+..-..+ ...+++. .......++|.|+.=...+...|+...+.+++-+.....+....
T Consensus 953 akaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemskd 1032 (1172)
T KOG0213|consen 953 AKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKD 1032 (1172)
T ss_pred HHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhh
Confidence 7432111 0000000 00012345666666666677788888888887775432222111
Q ss_pred HHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-------cCCHHH
Q 009647 394 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-------SADIEA 466 (530)
Q Consensus 394 li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-------~~d~~i 466 (530)
.+- -+.|.|.+.|.+.|..-|.-|+.++.+++.++. | -|+...++.||+ ...|.+
T Consensus 1033 Yiy-av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~---g--------------~g~eda~iHLLN~iWpNIle~sPhv 1094 (1172)
T KOG0213|consen 1033 YIY-AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP---G--------------TGCEDALIHLLNLIWPNILETSPHV 1094 (1172)
T ss_pred HHH-HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC---C--------------cCcHHHHHHHHHHhhhhhcCCChHH
Confidence 111 267888899999999999999999999998652 1 134444444443 245666
Q ss_pred HHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 467 ARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 467 ~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
+....++++.+-.... ...+ +..+.+=.+|+...|++.-..+.+..
T Consensus 1095 iqa~~e~~eg~r~~Lg----~~~~-----~~Y~~QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1095 IQAFDEAMEGLRVALG----PQAM-----LKYCLQGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred HHHHHHHHHHHHHHhc----hHHH-----HHHHHHhccCcHHHHHHHHHHHHHhH
Confidence 6666666665532211 1111 22233335788887777665555443
No 56
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.75 E-value=4.3e-06 Score=82.27 Aligned_cols=324 Identities=16% Similarity=0.117 Sum_probs=214.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHH------HHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETA------LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIA 166 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~i------i~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia 166 (530)
+..++.++. +...++.....+.-+-.+|+..+.. ...+ ...-..+.++.+|..++ .-++-.++|++..++
T Consensus 67 v~~fi~LlS--~~~kdd~v~yvL~li~DmLs~d~sr-~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 67 VKTFINLLS--HIDKDDTVQYVLTLIDDMLSEDRSR-VDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHhc--hhhhHHHHHHHHHHHHHHHhhCchH-HHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 344444443 2233445566677777887755321 1111 12335778888888766 333333889999988
Q ss_pred cCChhhHHh-hcC-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC--CChhHHHHHH
Q 009647 167 AGKQEETKA-LLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAA 242 (530)
Q Consensus 167 ~~~~~~~~~-i~~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~--~~~~~~~~a~ 242 (530)
...+..... ..+ -...+-..++++.+.+-..-|+.||.-+.. -+++|..+...+++..++..+.+ .+..++-..+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 544322111 111 233444555555667788889999999998 57999999999999999998843 3677888899
Q ss_pred HHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCCc------hhHHHHHhcCchHHHHHH
Q 009647 243 WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSN------VATSLLVKSGVLQLLVER 315 (530)
Q Consensus 243 ~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~------~~~~~i~~~g~l~~Lv~l 315 (530)
.|++-|+.. |... +.+...+.++.|..++.+. .+.|..-++.++.|+.+..+ +....++..++.+.+-.+
T Consensus 222 fciWlLtFn--~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L 298 (442)
T KOG2759|consen 222 FCIWLLTFN--PHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSL 298 (442)
T ss_pred HHHHHhhcC--HHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHH
Confidence 999988865 3333 5555678999999999855 46788889999999998653 344556666655554433
Q ss_pred Hh-cCCCccchhhhHHHHhh--------hhcCCccccchhcccCCC---------------------cchhhHHHHHHHh
Q 009647 316 LA-TSNSLQLLIPVLRSLGN--------LVAGDSSTISDVLVPGHG---------------------ITDQVIAVLVKCL 365 (530)
Q Consensus 316 L~-~~~~~~v~~~al~~L~n--------l~~~~~~~~~~~i~~g~~---------------------~~~~~l~~L~~lL 365 (530)
.. .-.|+++... +..|.. +++.++ .... +.+|.. -+..++..|+.+|
T Consensus 299 ~~rkysDEDL~~d-i~~L~e~L~~svq~LsSFDe-Y~sE-l~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lL 375 (442)
T KOG2759|consen 299 EERKYSDEDLVDD-IEFLTEKLKNSVQDLSSFDE-YKSE-LRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLL 375 (442)
T ss_pred HhcCCCcHHHHHH-HHHHHHHHHHHHHhhccHHH-HHHH-HHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHH
Confidence 32 1234443322 211111 111111 0000 112210 1346889999999
Q ss_pred ccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 366 KSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 366 ~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
..+ +|.+-.-||.=|+....+.|+....+.+.|+=..++++++++|++|+.+|+.|+--+..
T Consensus 376 e~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 376 ETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred hcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 765 58889999999999999999999989999999999999999999999999999876643
No 57
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.72 E-value=2.2e-06 Score=84.23 Aligned_cols=234 Identities=17% Similarity=0.159 Sum_probs=163.0
Q ss_pred HHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhh-cCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc
Q 009647 144 QCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHL-GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ 220 (530)
Q Consensus 144 ~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL-~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~ 220 (530)
..+.+..++.-..-|+.||.-+..-++ .+...+ +++..++..+ +...+.+++.+.+.|+.-+.. ++.....+...
T Consensus 163 ~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~ 240 (442)
T KOG2759|consen 163 EQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRF 240 (442)
T ss_pred HHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhc
Confidence 334443333333458889998887653 555555 6888888888 555678899998888888887 55666777888
Q ss_pred CChhhhHhhcCCC-ChhHHHHHHHHHHHhhcCCCCCchh----hHHHhhchHHHHHHHhc---cCCHHHHHHHHHHHHHh
Q 009647 221 GALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPAT----ELIKVDGLLDAILRHLK---RADEELTTEVAWVVVYL 292 (530)
Q Consensus 221 g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~~~~~----~~v~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L 292 (530)
+.|+.|..++++. ...+.|.++.++.|++........+ ..+ ..+-++..++.|. .+|+++..+.-..-..|
T Consensus 241 ~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~m-v~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L 319 (442)
T KOG2759|consen 241 DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQM-VLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKL 319 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH-HhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 9999999999864 7899999999999999643111111 112 2234444455554 45777666554333322
Q ss_pred hcC------CchhH------------------------HHHHh--cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647 293 SAL------SNVAT------------------------SLLVK--SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 340 (530)
Q Consensus 293 ~~~------~~~~~------------------------~~i~~--~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 340 (530)
-.. .+++. ..+-+ ..++..|+.+|..+.++.++.-||.=||..+...+
T Consensus 320 ~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP 399 (442)
T KOG2759|consen 320 KNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP 399 (442)
T ss_pred HHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc
Confidence 210 11121 12212 23677899999777789999999999999999988
Q ss_pred cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647 341 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 341 ~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~ 386 (530)
.....+.+ .|+=..++.+++|+++.||.+|+.++..+..+
T Consensus 400 ~gk~vv~k------~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 400 EGKAVVEK------YGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hHhHHHHH------hchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 87777764 57999999999999999999999999877654
No 58
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=4.4e-06 Score=87.51 Aligned_cols=275 Identities=16% Similarity=0.204 Sum_probs=177.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh-----------
Q 009647 103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE----------- 171 (530)
Q Consensus 103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~----------- 171 (530)
.+++|.+.+..|..+|.++++.. ...........+.+.-+.-+.+++ +++...+...-.+++....+
T Consensus 226 tq~~d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfaitl~amks~~-deValQaiEFWsticeEEiD~~~e~~e~~d~ 303 (859)
T KOG1241|consen 226 TQSPDEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAITLAAMKSDN-DEVALQAIEFWSTICEEEIDLAIEYGEAVDQ 303 (859)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36889999999999999998753 223333445556666666677655 67777777777777632211
Q ss_pred ----h-----HHhhcCCcHHHHHhhcCC-C-----CHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChh
Q 009647 172 ----E-----TKALLPALPLLIAHLGEK-S-----SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS 236 (530)
Q Consensus 172 ----~-----~~~i~~~v~~L~~lL~~~-~-----~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~ 236 (530)
. ..++-+.+|.|+++|... + +......|--||.-++. -++|.++. .++|.+-.-+++++-.
T Consensus 304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~---~~~D~Iv~-~Vl~Fiee~i~~pdwr 379 (859)
T KOG1241|consen 304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ---CVGDDIVP-HVLPFIEENIQNPDWR 379 (859)
T ss_pred CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---Hhcccchh-hhHHHHHHhcCCcchh
Confidence 0 111114789999998652 1 22344444444444432 12223333 3444444566788999
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh-HHHHHhcCchHHHHHH
Q 009647 237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA-TSLLVKSGVLQLLVER 315 (530)
Q Consensus 237 ~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~-~~~i~~~g~l~~Lv~l 315 (530)
-++.++.++..+..+.++.....+ +.+++|.++.++.++.--++..+.|+|+.+++.-++. .......+.++.++.-
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~i--V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g 457 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPI--VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG 457 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHH--HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH
Confidence 999999999999988654433334 5699999999999777778899999999999864433 3334445677777777
Q ss_pred HhcCCCccchhhhHHHHhhhhcCCcc------ccchhcccCCCcchhhHHHHH-HHh---cc---CcHhHHHHHHHHHHH
Q 009647 316 LATSNSLQLLIPVLRSLGNLVAGDSS------TISDVLVPGHGITDQVIAVLV-KCL---KS---EHRVLKKEAAWVLSN 382 (530)
Q Consensus 316 L~~~~~~~v~~~al~~L~nl~~~~~~------~~~~~i~~g~~~~~~~l~~L~-~lL---~~---~~~~i~~~A~~~Lsn 382 (530)
| ++.|.+..+++|++-+++..-.+ +++.. + .+.+.++ .|+ .. .+..+|..|.-+|..
T Consensus 458 L--~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~-------t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmE 527 (859)
T KOG1241|consen 458 L--NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA-------T-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALME 527 (859)
T ss_pred h--hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc-------c-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 7 46778889999999999843211 11111 1 1233322 233 22 245899999999999
Q ss_pred HhcCCHHHHHHHH
Q 009647 383 IAAGSVEHKQLIH 395 (530)
Q Consensus 383 l~~~~~~~~~~li 395 (530)
+...++..+..++
T Consensus 528 lIk~st~~vy~~v 540 (859)
T KOG1241|consen 528 LIKNSTDDVYPMV 540 (859)
T ss_pred HHHcCcHHHHHHH
Confidence 9988776655443
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.63 E-value=9.9e-06 Score=82.24 Aligned_cols=276 Identities=18% Similarity=0.190 Sum_probs=178.8
Q ss_pred CHHHHHHHhcC--CCChHHHHH-HHHHHHHHhcCChh-hHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch
Q 009647 138 AIPVLVQCLAF--GSPDEQLLE-AAWCLTNIAAGKQE-ETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 212 (530)
Q Consensus 138 ~v~~Lv~lL~~--~~~~~~~~e-A~~~L~nia~~~~~-~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~ 212 (530)
++.+...|... .++..-++| |+.+++.+-.|..+ ....++ .++|.+...+.+ +...+++.++||+|.|+. .
T Consensus 363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D-~~l~vk~ttAwc~g~iad---~ 438 (858)
T COG5215 363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD-SCLWVKSTTAWCFGAIAD---H 438 (858)
T ss_pred hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc-ceeehhhHHHHHHHHHHH---H
Confidence 45556666642 233455677 78999999977543 444555 699999999986 778999999999999985 3
Q ss_pred hHHHHHhcCChhhhHhhcC---CCChhHHHHHHHHHHHhhcCCCCCchhhH-HHhhchHHHHHHHh-c-----cCCHHHH
Q 009647 213 FRNVLLSQGALPPLARMML---PNKGSTVRTAAWALSNLIKGPDPKPATEL-IKVDGLLDAILRHL-K-----RADEELT 282 (530)
Q Consensus 213 ~r~~~~~~g~i~~L~~lL~---~~~~~~~~~a~~~L~nL~~~~~~~~~~~~-v~~~~~l~~L~~lL-~-----~~d~~v~ 282 (530)
..+.+-.+|-+++.++-.. .+.+.+..+++|+.-||..+- ++..++. -....+.+.++.-| . ..+...+
T Consensus 439 va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~-a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R 517 (858)
T COG5215 439 VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI-AKAVREVESFLAKFYLAILNALVKGTELALNESNLR 517 (858)
T ss_pred HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh-hhhhccccchhHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4556666777777765332 346788899999999998653 2222110 00123334443322 1 2334677
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc----------C----CCccchhhhHHHHhhhhcCCccccchhcc
Q 009647 283 TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT----------S----NSLQLLIPVLRSLGNLVAGDSSTISDVLV 348 (530)
Q Consensus 283 ~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~----------~----~~~~v~~~al~~L~nl~~~~~~~~~~~i~ 348 (530)
.....+|+.|..-.++....++ .|+.......|.. . .-.+++.+-+..|..++......+..+-
T Consensus 518 ~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~- 595 (858)
T COG5215 518 VSLFSALGTLILICPDAVSDIL-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE- 595 (858)
T ss_pred HHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-
Confidence 7777777777764443333221 2333322222210 0 1234556667777777655444333333
Q ss_pred cCCCcchhhHHHHHHHhccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 349 PGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 349 ~g~~~~~~~l~~L~~lL~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
..++..++++|.+.++ .+-.+...+|++++..-.++...-.. .++|.|.+.|...+..+..-|+..++.++.
T Consensus 596 ------D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~-~fiPyl~~aln~~d~~v~~~avglvgdlan 668 (858)
T COG5215 596 ------DQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYAS-KFIPYLTRALNCTDRFVLNSAVGLVGDLAN 668 (858)
T ss_pred ------HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 3588889999988765 56678889999998865555555444 489999999998898899999999998875
No 60
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.60 E-value=8.5e-06 Score=82.73 Aligned_cols=357 Identities=15% Similarity=0.150 Sum_probs=203.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh----------
Q 009647 103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE---------- 172 (530)
Q Consensus 103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~---------- 172 (530)
.+++|.+.|..|..+|.|++... ......+.+.-+.....+++++++ +++...|...-..|+....+.
T Consensus 230 tq~~d~e~q~aafgCl~kim~Ly-Y~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~~~pe~ 307 (858)
T COG5215 230 TQGNDEELQHAAFGCLNKIMMLY-YKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDKYLPEV 307 (858)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHhhcccC
Confidence 36889999999999999997643 223333445555556667777765 555556655554444221110
Q ss_pred --------HHhhcCCcHHHHHhhcCC-C-------------------------------------------CHHHHHHHH
Q 009647 173 --------TKALLPALPLLIAHLGEK-S-------------------------------------------SSPVAEQCA 200 (530)
Q Consensus 173 --------~~~i~~~v~~L~~lL~~~-~-------------------------------------------~~~v~~~a~ 200 (530)
+.++.+.+|.|+.+|... + +..=++.|+
T Consensus 308 p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaav 387 (858)
T COG5215 308 PAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAV 387 (858)
T ss_pred chhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHH
Confidence 111225789999998641 1 111256666
Q ss_pred HHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc---c
Q 009647 201 WALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK---R 276 (530)
Q Consensus 201 ~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~---~ 276 (530)
-++|.+-.+.. .++..+ ...++|.+...+.++..-+...++||+..++.+- .+.+.-.+-++..++-.. .
T Consensus 388 mAfGSvm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v-----a~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 388 MAFGSVMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV-----AMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred HHhhhhhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH-----HHhcCccccccHHHHHHHhhhh
Confidence 67776664322 233333 3456788888887777788999999999998642 122222233333332221 3
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHH--HhcCchHHHHHHHh-----cCCCccchhhhHHHHhhhhcCCccccchhccc
Q 009647 277 ADEELTTEVAWVVVYLSALSNVATSLL--VKSGVLQLLVERLA-----TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 349 (530)
Q Consensus 277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i--~~~g~l~~Lv~lL~-----~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~ 349 (530)
+.+.+..+++|..-++.+.-.+....+ .-....+.+++-|. ..++...+..+..+||.++...++....++..
T Consensus 462 D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~ 541 (858)
T COG5215 462 DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAG 541 (858)
T ss_pred ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 457889999999999997532222110 00112223333222 13455678889999999887765443222210
Q ss_pred C----CCcchhhHHHHHHHhccCc----HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChh-HHHHHHH
Q 009647 350 G----HGITDQVIAVLVKCLKSEH----RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD-IKKEVAY 420 (530)
Q Consensus 350 g----~~~~~~~l~~L~~lL~~~~----~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~-v~~eA~~ 420 (530)
= ...-...+..+-+.+...+ .+++.+-|.+|..|.+..+..+..+-+ .++..++++|++.++. +-.+...
T Consensus 542 ~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~t~~~~dV~~ 620 (858)
T COG5215 542 FYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKPTTAFGDVYT 620 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCCchhhhHHHH
Confidence 0 0000012222333333332 356677777777776654333333222 2667888999877544 4566778
Q ss_pred HHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647 421 VLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR 479 (530)
Q Consensus 421 aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~ 479 (530)
+|++++..-+ ++ -.-.-..++|.|..-|+..|..+...+...+..+..
T Consensus 621 aIsal~~sl~----------e~-Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlan 668 (858)
T COG5215 621 AISALSTSLE----------ER-FEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLAN 668 (858)
T ss_pred HHHHHHHHHH----------HH-HHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 8888875210 11 112235678999998988888888777776666543
No 61
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=7.4e-06 Score=88.36 Aligned_cols=278 Identities=14% Similarity=0.141 Sum_probs=201.5
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHH
Q 009647 106 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLL 183 (530)
Q Consensus 106 ~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L 183 (530)
+--+.|+.|-..+-..=+.+.+||- =+|..++.|-+ ..-+.-|+..|..+-.-.+=....-+ |+.|..
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPe-------QLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYV 517 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPE-------QLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYV 517 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChH-------hcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHH
Confidence 4456788888888777666777775 24556665542 11224477777776654443333333 899999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-C--ChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647 184 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-N--KGSTVRTAAWALSNLIKGPDPKPATEL 260 (530)
Q Consensus 184 ~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~--~~~~~~~a~~~L~nL~~~~~~~~~~~~ 260 (530)
++||++ +..+++-..+++-..|-.-++.++..++..++-...++.|.+ + +++-+..|++.|+.++++. +.. .+.
T Consensus 518 LKLLQS-~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf-~lG-Q~a 594 (1387)
T KOG1517|consen 518 LKLLQS-SARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF-KLG-QKA 594 (1387)
T ss_pred HHHhcc-chHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc-chh-HHH
Confidence 999998 778999999988888877678899888988888889998886 3 4688899999999999873 222 233
Q ss_pred HHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC-
Q 009647 261 IKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG- 338 (530)
Q Consensus 261 v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~- 338 (530)
....+.+...+..|.++ .+-++..+|-||+.|-.+.++..-.-...++..+|+.+| ..+-++|+..|+.|||-+..+
T Consensus 595 cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L-sD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 595 CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL-SDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh-cCccHHHHHHHHHHHHHHhccc
Confidence 34678888888888875 577889999999999987776665556788999999998 578899999999999999875
Q ss_pred ---Cccccchh---cccCCC--cchhhH----HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 009647 339 ---DSSTISDV---LVPGHG--ITDQVI----AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS 397 (530)
Q Consensus 339 ---~~~~~~~~---i~~g~~--~~~~~l----~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~ 397 (530)
.++++..+ ++.... .-...+ -.++.+++...+-++++..-+++.++.+...+...+.-.
T Consensus 674 ~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n 744 (1387)
T KOG1517|consen 674 SDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGN 744 (1387)
T ss_pred ccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhh
Confidence 33443332 110000 001222 267778888999999999999999998877666655443
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.49 E-value=1.4e-05 Score=79.36 Aligned_cols=272 Identities=18% Similarity=0.131 Sum_probs=179.7
Q ss_pred HHHHcCCHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCChhhHHhhcC-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC
Q 009647 132 TALKAGAIPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGE 209 (530)
Q Consensus 132 ~ii~~g~v~~Lv~lL~~~~~~-~~~~eA~~~L~nia~~~~~~~~~i~~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d 209 (530)
.+-..|.+..|++++..++.. .++.+|+..|..+... ++.+.+.. ++..++.+-.....++.....+.+|+++-.+
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 344578999999999977643 3456899999998764 45666662 3444444444445689999999999999999
Q ss_pred CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHH
Q 009647 210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 289 (530)
Q Consensus 210 ~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L 289 (530)
+++....+++.|++..++--....++.+.++|+.+|.|.+-+..-...+.+| +..+-..|..+-.+.|+-++..||.+.
T Consensus 253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmv-eKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMV-EKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHH-HhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 9999999999999999998888889999999999999987653223334444 567777788777788888899999999
Q ss_pred HHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc
Q 009647 290 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH 369 (530)
Q Consensus 290 ~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~ 369 (530)
+-|+.+ .+.-..+...|.+..+-.++. +-++.- ++.......|- ....-++.|+.+|.+..
T Consensus 332 ~vlat~-KE~E~~VrkS~TlaLVEPlva-~~DP~~----------FARD~hd~aQG-------~~~d~LqRLvPlLdS~R 392 (832)
T KOG3678|consen 332 AVLATN-KEVEREVRKSGTLALVEPLVA-SLDPGR----------FARDAHDYAQG-------RGPDDLQRLVPLLDSNR 392 (832)
T ss_pred hhhhhh-hhhhHHHhhccchhhhhhhhh-ccCcch----------hhhhhhhhhcc-------CChHHHHHhhhhhhcch
Confidence 999974 344445555665544333332 333221 11111111110 02357888999999765
Q ss_pred HhHHHHHHHHHHHHhc-CCHHH-HHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHh
Q 009647 370 RVLKKEAAWVLSNIAA-GSVEH-KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL 425 (530)
Q Consensus 370 ~~i~~~A~~~Lsnl~~-~~~~~-~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl 425 (530)
..-+--+++-+..=++ .+.+. .+.+-+-|.|..|-++..+++..-.+-|..+|.-+
T Consensus 393 ~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 393 LEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 5444333333322222 12122 22334568899999999887765445555555544
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00013 Score=77.30 Aligned_cols=212 Identities=20% Similarity=0.206 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHH-HHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH-------hhcC---
Q 009647 110 KRVNALRELRRLLSRFEFPPIETALKAGAIPV-LVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK-------ALLP--- 178 (530)
Q Consensus 110 ~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~-Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~-------~i~~--- 178 (530)
...+-+..+|.-+....+++. ....++... .+++|..+.. |-=..||.-+++++--.++ .+++
T Consensus 29 vI~kE~a~IRa~ire~~~d~~--~r~rniaKLlYi~MLGypah----FGqieclKLias~~f~dKRiGYLaamLlLdE~q 102 (866)
T KOG1062|consen 29 VIQKECAAIRASIREPTNDPR--KRHRNIAKLLYIHMLGYPAH----FGQIECLKLIASDNFLDKRIGYLAAMLLLDERQ 102 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHhCCCcc----chhhHHHHHhcCCCchHHHHHHHHHHHHhccch
Confidence 445556667776655444443 223333332 2355554432 2223455555554321111 0001
Q ss_pred -----CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 179 -----ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 179 -----~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
.+..+.+=|++ ++.-+.-.|+.+||+|+. ++... ...|-+.+++++.++.+++.|+.|...+.+-.
T Consensus 103 dvllLltNslknDL~s-~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~- 173 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNS-SNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKV- 173 (866)
T ss_pred HHHHHHHHHHHhhccC-CCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-
Confidence 22233333444 566688899999999996 34322 34577888999999999999999999998642
Q ss_pred CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc--------------C
Q 009647 254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT--------------S 319 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~--------------~ 319 (530)
|. . ...+++...++|.+.+..|.......+..+|..+++.....-+ +++.++..|.. -
T Consensus 174 P~----l--~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi 245 (866)
T KOG1062|consen 174 PD----L--VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGI 245 (866)
T ss_pred ch----H--HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCC
Confidence 32 3 3578888999999888889888888888888877766666544 66767766641 1
Q ss_pred CCccchhhhHHHHhhhhcCCccccc
Q 009647 320 NSLQLLIPVLRSLGNLVAGDSSTIS 344 (530)
Q Consensus 320 ~~~~v~~~al~~L~nl~~~~~~~~~ 344 (530)
++|-++..+++.|+-+-.++.+..+
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd 270 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASD 270 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHH
Confidence 4566677888888877766655443
No 64
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.47 E-value=3.4e-07 Score=61.21 Aligned_cols=40 Identities=35% Similarity=0.533 Sum_probs=37.9
Q ss_pred CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 387 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 387 ~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
++++++.+++.|++|+|+++|.+++++++++|+|+|+|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999997
No 65
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.47 E-value=3.5e-05 Score=78.76 Aligned_cols=241 Identities=18% Similarity=0.098 Sum_probs=132.4
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHH
Q 009647 138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL 217 (530)
Q Consensus 138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~ 217 (530)
+++.++..|..+...+....+++++. ....+. ++..|+..|.+ +++.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~~-------~~~~L~~~L~d-~~~~vr~aaa~ALg~i~~--------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL--AQEDAL-------DLRSVLAVLQA-GPEGLCAGIQAALGWLGG--------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh--ccCChH-------HHHHHHHHhcC-CCHHHHHHHHHHHhcCCc---------
Confidence 56667777754444444444444442 222221 25667777766 566677777777776433
Q ss_pred HhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc
Q 009647 218 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 297 (530)
Q Consensus 218 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~ 297 (530)
....+.|+.+++++++.++..++-++...- ....+.+..+|.++|+.++..++.+|+++-..
T Consensus 116 --~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 116 --RQAEPWLEPLLAASEPPGRAIGLAALGAHR--------------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred --hHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 124566777777777777766665554411 12234566667777777777777777777641
Q ss_pred hhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHH
Q 009647 298 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 377 (530)
Q Consensus 298 ~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~ 377 (530)
..++.|...+ .+.++.|+..|+.+++.+- ++ ..++.+..+...........+.
T Consensus 178 ---------~a~~~L~~al-~d~~~~VR~aA~~al~~lG--~~---------------~A~~~l~~~~~~~g~~~~~~l~ 230 (410)
T TIGR02270 178 ---------LSESTLRLYL-RDSDPEVRFAALEAGLLAG--SR---------------LAWGVCRRFQVLEGGPHRQRLL 230 (410)
T ss_pred ---------cchHHHHHHH-cCCCHHHHHHHHHHHHHcC--CH---------------hHHHHHHHHHhccCccHHHHHH
Confidence 2344455555 4667777777777776542 11 2444445433333333333333
Q ss_pred HHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHh
Q 009647 378 WVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFID 457 (530)
Q Consensus 378 ~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~ 457 (530)
.++... +.+ ..++.|..+++++. ++..++++++.+- .| ..++.|+.
T Consensus 231 ~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg--------~p-------------~av~~L~~ 276 (410)
T TIGR02270 231 VLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG--------DV-------------EAAPWCLE 276 (410)
T ss_pred HHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC--------Cc-------------chHHHHHH
Confidence 333322 222 24556666666543 6667777776552 11 23455555
Q ss_pred hhccCCHHHHHHHHHHHHHHH
Q 009647 458 LVRSADIEAARLGLQFMELVL 478 (530)
Q Consensus 458 lL~~~d~~i~~~~L~~L~~il 478 (530)
.+. |+.+...+-+++..|.
T Consensus 277 ~l~--d~~~aR~A~eA~~~It 295 (410)
T TIGR02270 277 AMR--EPPWARLAGEAFSLIT 295 (410)
T ss_pred Hhc--CcHHHHHHHHHHHHhh
Confidence 554 3336666666666664
No 66
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.44 E-value=0.00015 Score=78.12 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=132.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHH
Q 009647 103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPL 182 (530)
Q Consensus 103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~ 182 (530)
+.+++...++.|++.+-.-++.+++-+ -+.|-++.+.. ..+.++++-.-..|.+++...++... -+++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dms-------sLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~l---LavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMS-------SLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELAL---LAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHH---HHHHH
Confidence 457788899999988777667766532 25677777777 44578887788899999988874332 37788
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647 183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 262 (530)
Q Consensus 183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~ 262 (530)
+.+=|++ +++.+|..|+.+++.+=. .-+-..+++++.+++.++++.++++|+.|+.++.+-+ .+.+.
T Consensus 97 i~kDl~d-~N~~iR~~AlR~ls~l~~-------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-----~~l~~ 163 (757)
T COG5096 97 IQKDLQD-PNEEIRGFALRTLSLLRV-------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-----KDLYH 163 (757)
T ss_pred HHhhccC-CCHHHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-----Hhhhh
Confidence 8888887 899999999999997643 2233456899999999999999999999999999653 23444
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
..|.+..+..++.+.||.+..+|+.+|..+..
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 56788888888889999999999999988875
No 67
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.1e-05 Score=81.44 Aligned_cols=301 Identities=12% Similarity=0.103 Sum_probs=194.9
Q ss_pred HHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH
Q 009647 200 AWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE 279 (530)
Q Consensus 200 ~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~ 279 (530)
+-+|-.++....-.|.-+.+..+.++|+.+|.+|+..+.-.++..++|+.-.-++ ..+.+...+++..|++++.+.|.
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn--L~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN--LGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccc--hHHHHHHhhHHHHHHHHhhcchh
Confidence 3345566665557788889999999999999998888888888888888754332 34445578999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHH-HHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc---ccchhcccCCCcch
Q 009647 280 ELTTEVAWVVVYLSALSNVATS-LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS---TISDVLVPGHGITD 355 (530)
Q Consensus 280 ~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~---~~~~~i~~g~~~~~ 355 (530)
.++.+..|.+.++.-+.+...+ ..+..-++..++.+. ..+...++..++..|.|+...+.. ..+..+... -..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~--p~~ 564 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT--PRR 564 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecC--hHH
Confidence 9999999999999876544432 234455678888877 578889999999999999874322 223222210 011
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcC--CC---------hhHHHHHHHHHH
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLST--SP---------FDIKKEVAYVLG 423 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~--~~---------~~v~~eA~~aL~ 423 (530)
-+...|+.-+...+|-...+.|+.|-++++.+....+.++.. .++..+..+|.. +. ..+-.--..+..
T Consensus 565 ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 565 YLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 256667777788888777788999999999886666665543 455554444411 11 111111112222
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCCh--HHHHhhhc---cCCHHHHHHHHHHHHHHHccCCCC-------cchhHHH
Q 009647 424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCL--SGFIDLVR---SADIEAARLGLQFMELVLRGMPNH-------EGTKLVE 491 (530)
Q Consensus 424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i--~~L~~lL~---~~d~~i~~~~L~~L~~il~~~~~~-------~~~~~i~ 491 (530)
|+..++ ++. +.+.. |++=..=+ .++.++-....+.+.++...-+.. +.+..+.
T Consensus 645 ~l~e~~---d~f------------~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~ 709 (743)
T COG5369 645 NLSENS---DKF------------KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILC 709 (743)
T ss_pred cccccc---ccc------------ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHH
Confidence 222211 000 11122 23222211 123456666677767765432221 1235666
Q ss_pred HhchHHHHHHHhcCCcHHHHHHHHHHHHh
Q 009647 492 REDGIDAMERFQFHENEDLRNMANGLVDK 520 (530)
Q Consensus 492 ~~ggl~~L~~L~~~~~~~i~~~A~~il~~ 520 (530)
+.|.-+.+.++|.|++..|++++-..|+.
T Consensus 710 ~~G~~e~l~k~q~~~Sl~vrek~~taL~~ 738 (743)
T COG5369 710 ANGIREWLVKIQAKDSLIVREKIGTALEN 738 (743)
T ss_pred HccHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 77888899999999999999999888763
No 68
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.37 E-value=2e-05 Score=78.21 Aligned_cols=238 Identities=16% Similarity=0.176 Sum_probs=165.5
Q ss_pred HHHhhchHHHHHHHhccCCH--HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647 260 LIKVDGLLDAILRHLKRADE--ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 260 ~v~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 337 (530)
.+...+++..|++++..++- .++.++...|-.+.. .++.+.+...| +..++.+-.....++.....+..|+++..
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 34467999999999998875 468999999988874 34555565555 55555544333456677889999999999
Q ss_pred CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647 338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTSPFDIKK 416 (530)
Q Consensus 338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~-~~~~~~li~~~~l~~Li~lL~~~~~~v~~ 416 (530)
++++..+.++.. |++..++-.....+|.+.+.++.+|+|++-+. ......+++..+-+-|.-+-.+.|.-++.
T Consensus 252 HSeet~~~Lvaa------~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~ 325 (832)
T KOG3678|consen 252 HSEETCQRLVAA------GGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRL 325 (832)
T ss_pred hhHHHHHHHHhh------cccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHH
Confidence 999988888865 69999998898889999999999999998764 34445578888888888887777888999
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC---C----------------------------hHHHHhhhccCCHH
Q 009647 417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG---C----------------------------LSGFIDLVRSADIE 465 (530)
Q Consensus 417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g---~----------------------------i~~L~~lL~~~d~~ 465 (530)
.||.+++-++.+.+ .-..+...| . ++.|+-+|++...+
T Consensus 326 ~AClAV~vlat~KE-----------~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~E 394 (832)
T KOG3678|consen 326 HACLAVAVLATNKE-----------VEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLE 394 (832)
T ss_pred HHHHHHhhhhhhhh-----------hhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhh
Confidence 99999999987532 111111222 2 33344444432222
Q ss_pred HHHHHHHHHHHHHccCCC-C-cchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHH
Q 009647 466 AARLGLQFMELVLRGMPN-H-EGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD 519 (530)
Q Consensus 466 i~~~~L~~L~~il~~~~~-~-~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~ 519 (530)
.+ ++.+++.-++..-+ . ...+.|.+.|+++.|.++..++|+.-.+.|...|.
T Consensus 395 Aq--~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt 448 (832)
T KOG3678|consen 395 AQ--CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT 448 (832)
T ss_pred hh--hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 22 22222222221100 0 12467889999999999999998877777777665
No 69
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.5e-06 Score=87.45 Aligned_cols=306 Identities=12% Similarity=0.118 Sum_probs=198.7
Q ss_pred HHHHHHHHHhcCChh--hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC
Q 009647 157 EAAWCLTNIAAGKQE--ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP 232 (530)
Q Consensus 157 eA~~~L~nia~~~~~--~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~ 232 (530)
-++|++.-.+...+- -+.-+. +.+..|+++|+. |+.-+..-+...++|........+..++..|+|..|++++.+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 366766655533221 112222 489999999987 667777788889999998888999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCch---hHHHHHhcC--
Q 009647 233 NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV---ATSLLVKSG-- 307 (530)
Q Consensus 233 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~---~~~~i~~~g-- 307 (530)
.+..++.+..|.+..+..+......++.+ ..-+...++.+.++++-.++..++..|.|+++++.. ..+..++..
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~L-akig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFL-AKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhH-HhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 99999999999999999887655555554 356778888999888889999999999999985432 222222221
Q ss_pred --chHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc---------Cc--HhHHH
Q 009647 308 --VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS---------EH--RVLKK 374 (530)
Q Consensus 308 --~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~---------~~--~~i~~ 374 (530)
....|++.+ ...+|--..+.+..|-+++..++...+.++. +...+..+..+|.. ++ ..+--
T Consensus 564 ~ylfk~l~~k~-e~~np~~i~~~~yilv~~aa~d~~l~~~V~~-----q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~ 637 (743)
T COG5369 564 RYLFKRLIDKY-EENNPMEILEGCYILVRNAACDDTLDYIVQS-----QEDMLDSIFEILDEFAGRTPLSPGSKEEHVLL 637 (743)
T ss_pred HHHHHHHHHHH-HhcCchhhhhhHHHHHHHHhccchHHHHHHh-----HHHHHHHHHHHHHHHcccCCCCCCCCcccccC
Confidence 334555655 3566666677899999999888877666654 34555555544421 10 11111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhCCcH--HHHHHHhc----CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647 375 EAAWVLSNIAAGSVEHKQLIHSSEAL--ALLLHLLS----TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448 (530)
Q Consensus 375 ~A~~~Lsnl~~~~~~~~~~li~~~~l--~~Li~lL~----~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~ 448 (530)
.-..+.-|+...+... +.+.. |++= ... .++.++--+..|.+.|+.+....+.-+ ..-.+.++.|++
T Consensus 638 p~s~~~v~l~e~~d~f-----~r~~~~~p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt-ratveR~~iL~~ 710 (743)
T COG5369 638 PISYTIVNLSENSDKF-----KRLVLTTPHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT-RATVERIQILCA 710 (743)
T ss_pred ccceeeeccccccccc-----ccceecCCCcc-ccccccCCCchhhhhccceEEEecccCccCCccc-hhhHHHHHHHHH
Confidence 1122222222211111 11111 2221 122 123457778899999987643211101 111367788888
Q ss_pred cCChHHHHhhhccCCHHHHHHHHHHHHHH
Q 009647 449 RGCLSGFIDLVRSADIEAARLGLQFMELV 477 (530)
Q Consensus 449 ~g~i~~L~~lL~~~d~~i~~~~L~~L~~i 477 (530)
.|+-.-+..+-....+.+...+=.+|+++
T Consensus 711 ~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 711 NGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred ccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 88888888877777778888887888775
No 70
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.00012 Score=69.36 Aligned_cols=288 Identities=22% Similarity=0.157 Sum_probs=178.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc----CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHH
Q 009647 141 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL----PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV 216 (530)
Q Consensus 141 ~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~----~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~ 216 (530)
.++.||.+.+ |.++..|..-+.+++++ ..+.+. -.++.+.+++.. ..+ .++|+.+|.|++. .+..|+.
T Consensus 7 elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq-~~~l~~~ 78 (353)
T KOG2973|consen 7 ELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQ-KEELRKK 78 (353)
T ss_pred HHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHh-hHHHHHH
Confidence 4678888776 45667788788888766 223333 268889999987 333 7899999999998 4688888
Q ss_pred HHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH-hh----chHHHHH-HHhccCCH--HHHHHHHHH
Q 009647 217 LLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK-VD----GLLDAIL-RHLKRADE--ELTTEVAWV 288 (530)
Q Consensus 217 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~-~~----~~l~~L~-~lL~~~d~--~v~~~a~~~ 288 (530)
+++. .+..++..+.++.....+..+..|+||++.++ ....+.. .. ..++.++ .+..++-. .-....+..
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~--~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD--EVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCch--HHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 8887 78888888888888899999999999998653 2222111 01 2233333 33332221 234455667
Q ss_pred HHHhhcCCchhHHHHHhcCchH--HHHHHHhcCCCccch-hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh
Q 009647 289 VVYLSALSNVATSLLVKSGVLQ--LLVERLATSNSLQLL-IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL 365 (530)
Q Consensus 289 L~~L~~~~~~~~~~i~~~g~l~--~Lv~lL~~~~~~~v~-~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL 365 (530)
+.+|+. .......+.+...++ +++. + .+.+..++ .-...+|.|.+.....+..-+ +- ...++|.+..=+
T Consensus 156 f~nls~-~~~gR~l~~~~k~~p~~kll~-f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL-~e----~~~lLp~iLlPl 227 (353)
T KOG2973|consen 156 FANLSQ-FEAGRKLLLEPKRFPDQKLLP-F-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLL-DE----SINLLPAILLPL 227 (353)
T ss_pred HHHHhh-hhhhhhHhcchhhhhHhhhhc-c-cccchhhhccchHHHHHhhhccchhHHHHh-cc----hHHHHHHHHhhc
Confidence 778876 444455555544332 2332 2 23344444 467788888876654443322 11 123444433322
Q ss_pred ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-----CCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 009647 366 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-----TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ 440 (530)
Q Consensus 366 ~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-----~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~ 440 (530)
.... . -+++... .+|.=+++|. .+++++++.-+.+|.-+|...
T Consensus 228 agpe-e--------------~sEEdm~------~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~----------- 275 (353)
T KOG2973|consen 228 AGPE-E--------------LSEEDMA------KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR----------- 275 (353)
T ss_pred CCcc-c--------------cCHHHHh------cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-----------
Confidence 2221 1 0122111 2344347774 467899999999999888631
Q ss_pred HHHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHc
Q 009647 441 EHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLR 479 (530)
Q Consensus 441 ~~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~ 479 (530)
.-++++.+.|+.+.+-.+=++ .|+++...+......+.+
T Consensus 276 ~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 276 AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 335788899998887776555 678888887776666654
No 71
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00063 Score=72.27 Aligned_cols=237 Identities=16% Similarity=0.228 Sum_probs=121.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhcCCchhH----HHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccch
Q 009647 270 ILRHLKRADEELTTEVAWVVVYLSALSNVAT----SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD 345 (530)
Q Consensus 270 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~----~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~ 345 (530)
++++|...|++.-....-.|..++.+.+... ..++ ..+..+..+ .++..++.-|..+||.+..+.+..+..
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILY--E~V~TI~~I---~~~~~LrvlainiLgkFL~n~d~NirY 331 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILY--ECVRTIMDI---RSNSGLRVLAINILGKFLLNRDNNIRY 331 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHH--HHHHHHHhc---cCCchHHHHHHHHHHHHhcCCccceee
Confidence 3445556666666666666666665332211 1111 123333321 234455556666666666555544433
Q ss_pred hcccC----CCcchhhH----HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647 346 VLVPG----HGITDQVI----AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417 (530)
Q Consensus 346 ~i~~g----~~~~~~~l----~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e 417 (530)
+---+ ...+..++ ..++.+|++.|..||+.|+-.+..|+..+ ++..+ +..|+..|...+.+.+..
T Consensus 332 vaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~m-----v~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 332 VALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVRVM-----VKELLEFLESSDEDFKAD 404 (866)
T ss_pred eehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHHH-----HHHHHHHHHhccHHHHHH
Confidence 21000 00011122 24778899999999999999998887543 44443 456888888778888888
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHH------HHHhcCChHHHHhhhccC-------------------------CHHH
Q 009647 418 VAYVLGNLCVSPTEGEGKPKLIQEHLV------SLVGRGCLSGFIDLVRSA-------------------------DIEA 466 (530)
Q Consensus 418 A~~aL~nl~~~~~~~~~~~~~~~~~~~------~l~~~g~i~~L~~lL~~~-------------------------d~~i 466 (530)
.+.-++.++..-.+ .+-=-|+.... .+++..++..|+.++.+. .+.+
T Consensus 405 ~as~I~~laEkfaP--~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l 482 (866)
T KOG1062|consen 405 IASKIAELAEKFAP--DKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPL 482 (866)
T ss_pred HHHHHHHHHHhcCC--cchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhH
Confidence 88888887753211 11000000011 122345666677766654 1223
Q ss_pred HHHHHHHHHH---HHccCCCCcchhHHHHhchHHHHHHHhcCC--cHHHHHHHHHHHHh
Q 009647 467 ARLGLQFMEL---VLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDK 520 (530)
Q Consensus 467 ~~~~L~~L~~---il~~~~~~~~~~~i~~~ggl~~L~~L~~~~--~~~i~~~A~~il~~ 520 (530)
++++.|+|.- ++-.+.+...+..+-+...++.|++++.+. +..+..+|...+-+
T Consensus 483 ~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~K 541 (866)
T KOG1062|consen 483 LQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLK 541 (866)
T ss_pred HHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3344444421 111111112334555678888888876543 45555555444433
No 72
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.31 E-value=8.2e-07 Score=59.34 Aligned_cols=41 Identities=29% Similarity=0.590 Sum_probs=38.4
Q ss_pred CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647 210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 250 (530)
Q Consensus 210 ~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 250 (530)
+++.++.+++.|++|+|+.+|.+++.++++.|+|+|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999984
No 73
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00023 Score=74.53 Aligned_cols=235 Identities=14% Similarity=0.154 Sum_probs=166.2
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc
Q 009647 197 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR 276 (530)
Q Consensus 197 ~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~ 276 (530)
.-|+..|+.+... .-.| +.-+-++.+|.++.+.++.-|+..+..++-. .++.+ ...+|.|..-|.+
T Consensus 127 giAL~GLS~fvTp-dLAR------DLa~Dv~tLL~sskpYvRKkAIl~lykvFLk-----YPeAl--r~~FprL~EkLeD 192 (877)
T KOG1059|consen 127 GLALSGLSCIVTP-DLAR------DLADDVFTLLNSSKPYVRKKAILLLYKVFLK-----YPEAL--RPCFPRLVEKLED 192 (877)
T ss_pred hheecccccccCc-hhhH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-----hhHhH--hhhHHHHHHhccC
Confidence 3455555555541 1223 3445688899999999999999999988742 23443 4889999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchh
Q 009647 277 ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 356 (530)
Q Consensus 277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~ 356 (530)
+|+.|+..|..+++.|++.++.+. ....|.+..+|..+.+..+++..+..+|+++.-.+.. ...
T Consensus 193 pDp~V~SAAV~VICELArKnPkny-----L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL-----------gKK 256 (877)
T KOG1059|consen 193 PDPSVVSAAVSVICELARKNPQNY-----LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL-----------GKK 256 (877)
T ss_pred CCchHHHHHHHHHHHHHhhCCccc-----ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchh-----------hhh
Confidence 999999999999999998665442 2356888888888888899999999999998665432 236
Q ss_pred hHHHHHHHhccCcH-hHHHHHHHHHH--HHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCC
Q 009647 357 VIAVLVKCLKSEHR-VLKKEAAWVLS--NIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGE 433 (530)
Q Consensus 357 ~l~~L~~lL~~~~~-~i~~~A~~~Ls--nl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~ 433 (530)
++++|..++.+... ++..++..++- |+..|.+.+-..+.- .+..|--++.++|+.++.-++-|++-+...
T Consensus 257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL--CvqKLr~fiedsDqNLKYlgLlam~KI~kt----- 329 (877)
T KOG1059|consen 257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL--CVQKLRIFIEDSDQNLKYLGLLAMSKILKT----- 329 (877)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH--HHHHHhhhhhcCCccHHHHHHHHHHHHhhh-----
Confidence 88999999987654 66666665542 555553222222111 345666677889999999999999888742
Q ss_pred CCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647 434 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 478 (530)
Q Consensus 434 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il 478 (530)
.|..++.|. ..++..|...|+.+...+|+.|+.|.
T Consensus 330 -Hp~~Vqa~k---------dlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 330 -HPKAVQAHK---------DLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred -CHHHHHHhH---------HHHHHHhccCCchhHHHHHHHHHHHh
Confidence 132222221 33577788888888888888887765
No 74
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.30 E-value=0.00021 Score=73.51 Aligned_cols=305 Identities=11% Similarity=0.067 Sum_probs=186.2
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchh--HHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhh---cCCC
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF--RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI---KGPD 253 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~--r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~---~~~~ 253 (530)
.|...+.+|.+ +.+.++++|+-..+.++.--..| -..+...|. .|..-|...++++.-..+.+++.+. +..+
T Consensus 605 ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 56777888887 78999999999998887411111 012222232 2445566667777665555555444 3322
Q ss_pred CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647 254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~ 333 (530)
-+|. ..+++|.|..+|.+....+..+....++.++...++++..----.++-.|++.|. +-+.+++.+|..++|
T Consensus 682 mqpP-----i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk-s~nKeiRR~A~~tfG 755 (975)
T COG5181 682 MQPP-----ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK-SWNKEIRRNATETFG 755 (975)
T ss_pred cCCc-----hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HhhHHHHHhhhhhhh
Confidence 2221 4699999999999999999999999999999988776543222245566788884 667789999998888
Q ss_pred hhhcCCccc--cchhccc----------------C----CCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH-H
Q 009647 334 NLVAGDSST--ISDVLVP----------------G----HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE-H 390 (530)
Q Consensus 334 nl~~~~~~~--~~~~i~~----------------g----~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~-~ 390 (530)
.|+..-..| ...+++. + ......++|.|+.=...+...|+...+.+++-+.....+ .
T Consensus 756 ~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s 835 (975)
T COG5181 756 CISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQAS 835 (975)
T ss_pred hHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHH
Confidence 887432211 1111100 0 001234566666655666667777777777665432111 1
Q ss_pred HHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc----cCCHHH
Q 009647 391 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR----SADIEA 466 (530)
Q Consensus 391 ~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~----~~d~~i 466 (530)
...+. -+.|.|-+.|.+.|+.-+.-|..+|.+++-++... |. ...++ +|+++|- .+.|.+
T Consensus 836 ~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-g~-------eda~I------HLlNllwpNIle~sPhv 899 (975)
T COG5181 836 LDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-GD-------EDAAI------HLLNLLWPNILEPSPHV 899 (975)
T ss_pred HHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-cc-------HHHHH------HHHHHhhhhccCCCcHH
Confidence 22222 26788889999999999999999999999876322 21 11221 2333332 355677
Q ss_pred HHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHH
Q 009647 467 ARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 517 (530)
Q Consensus 467 ~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~i 517 (530)
+....++++.+-.....+ .+ ...+.+=.+|+...|++.-...
T Consensus 900 i~~~~Eg~e~~~~~lg~g----~~-----m~Yv~qGLFHPs~~VRk~ywtv 941 (975)
T COG5181 900 IQSFDEGMESFATVLGSG----AM-----MKYVQQGLFHPSSTVRKRYWTV 941 (975)
T ss_pred HHHHHHHHHHHHHHhccH----HH-----HHHHHHhccCchHHHHHHHHHH
Confidence 776677776664332211 11 1234444689988887765433
No 75
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.25 E-value=0.00019 Score=73.42 Aligned_cols=243 Identities=16% Similarity=0.025 Sum_probs=164.0
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
+++.++..|...++.+++..+++++... +.+. ++..|+..|.+++..++..++.+|..+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG--------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC---------
Confidence 6788888886546788888888887632 2211 3788899999888889999998886442
Q ss_pred hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
.....+.|..++.++++.++..++.++.... ....+.+..+| ++.++.++..|+++||.+-..
T Consensus 115 ----~~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 115 ----GRQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred ----chHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 2356678889999999999888887666522 12346777788 588899999999999987532
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 418 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA 418 (530)
..++.|...+.+.++.||..|+++++-+ +.+. .++.+..............+
T Consensus 178 -----------------~a~~~L~~al~d~~~~VR~aA~~al~~l--G~~~---------A~~~l~~~~~~~g~~~~~~l 229 (410)
T TIGR02270 178 -----------------LSESTLRLYLRDSDPEVRFAALEAGLLA--GSRL---------AWGVCRRFQVLEGGPHRQRL 229 (410)
T ss_pred -----------------cchHHHHHHHcCCCHHHHHHHHHHHHHc--CCHh---------HHHHHHHHHhccCccHHHHH
Confidence 3777888889999999999999999777 3333 34556664444444444444
Q ss_pred HHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHH
Q 009647 419 AYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA 498 (530)
Q Consensus 419 ~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~ 498 (530)
..++... +.+ ..++.|..+++.++ +...++.++..+- ....++.
T Consensus 230 ~~~lal~--------~~~-------------~a~~~L~~ll~d~~--vr~~a~~AlG~lg-------------~p~av~~ 273 (410)
T TIGR02270 230 LVLLAVA--------GGP-------------DAQAWLRELLQAAA--TRREALRAVGLVG-------------DVEAAPW 273 (410)
T ss_pred HHHHHhC--------Cch-------------hHHHHHHHHhcChh--hHHHHHHHHHHcC-------------CcchHHH
Confidence 4444433 111 24566777776544 6667777776551 1223444
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647 499 MERFQFHENEDLRNMANGLVDKYFGE 524 (530)
Q Consensus 499 L~~L~~~~~~~i~~~A~~il~~~f~~ 524 (530)
|..+... +.+...|-..+++..+-
T Consensus 274 L~~~l~d--~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 274 CLEAMRE--PPWARLAGEAFSLITGM 297 (410)
T ss_pred HHHHhcC--cHHHHHHHHHHHHhhCC
Confidence 5444433 33778887777777663
No 76
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=3.2e-05 Score=83.60 Aligned_cols=239 Identities=16% Similarity=0.167 Sum_probs=178.4
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
-+|..++.|-+ .--|-.|+..|+..-.-++-.-+..+.-|+.|.+++||+++..+++-..++.-..+..-+ +....
T Consensus 473 QLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~ 548 (1387)
T KOG1517|consen 473 QLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQA 548 (1387)
T ss_pred hcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHH
Confidence 35666666544 234677888999988777888888899999999999999998888877777766665332 45566
Q ss_pred hHHHhhchHHHHHHHhcc-C--CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhh
Q 009647 259 ELIKVDGLLDAILRHLKR-A--DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 335 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~-~--d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl 335 (530)
+++. .++..++++.|.+ . +++-+.-++.+|+-++++..-......+.+++...++.|.+.+.+-++.-++-|||.+
T Consensus 549 dLvK-e~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 549 DLVK-ENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHh-ccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 7764 4555666666665 2 3588999999999999987767777788888888888884323455667899999999
Q ss_pred hcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC----CHHHHHHH------------HhCCc
Q 009647 336 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG----SVEHKQLI------------HSSEA 399 (530)
Q Consensus 336 ~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~----~~~~~~~l------------i~~~~ 399 (530)
-...+.....-. ..++...|..+|.++-++||..|.++|+.+..+ .+++...+ ++..+
T Consensus 628 W~d~~~Arw~G~------r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i 701 (1387)
T KOG1517|consen 628 WEDYDEARWSGR------RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLI 701 (1387)
T ss_pred hhhcchhhhccc------cccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHH
Confidence 977665433322 357899999999999999999999999999875 33333222 22222
Q ss_pred H---HHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 400 L---ALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 400 l---~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
. -.++.+++++++-+++|.+-+|+.++.+
T Consensus 702 ~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 702 IKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred HhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 2 3677788999999999999999998764
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.24 E-value=0.00099 Score=70.09 Aligned_cols=385 Identities=14% Similarity=0.165 Sum_probs=219.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-------CChHHHHHHHHHHHHHhcCC
Q 009647 97 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-------SPDEQLLEAAWCLTNIAAGK 169 (530)
Q Consensus 97 ~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-------~~~~~~~eA~~~L~nia~~~ 169 (530)
.-+++.-+|+|.+...-.++.+.+..+...-. ...+...++|-++...... +.. +..+.+-.|.+=....
T Consensus 639 lil~rEf~sPDeemkkivLKVv~qcc~t~Gv~--~~y~r~dilp~ff~~fw~rrmA~drr~yk-qlv~ttv~ia~KvG~~ 715 (1172)
T KOG0213|consen 639 LILIREFGSPDEEMKKIVLKVVKQCCATDGVE--PAYIRFDILPEFFFSFWGRRMALDRRNYK-QLVDTTVEIAAKVGSD 715 (1172)
T ss_pred HHHHHhhCCChHHHHHHHHHHHHHHhcccCCC--HHHHhhhhhHHHHhhhhhhhhhccccchh-hHHHHHHHHHHHhCch
Confidence 33444456888887777777777765543332 2466677777777655321 111 1111111111111111
Q ss_pred hhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHHHH
Q 009647 170 QEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALS 246 (530)
Q Consensus 170 ~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~ 246 (530)
..|...+.-|.+ .++..+...+.++.++.+.-. .--+.-++.-.+..++..++.. ...+.-+...+++
T Consensus 716 --------~~v~R~v~~lkd-e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~ 786 (1172)
T KOG0213|consen 716 --------PIVSRVVLDLKD-EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVV 786 (1172)
T ss_pred --------HHHHHHhhhhcc-ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHH
Confidence 134455555555 455555555544444432110 0011122233455555555543 3345555555555
Q ss_pred HhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC--CchhHHHHHhcCchHHHHHHHhcCCCccc
Q 009647 247 NLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL--SNVATSLLVKSGVLQLLVERLATSNSLQL 324 (530)
Q Consensus 247 nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v 324 (530)
|-.-+. -++ . ...++..++..|++..+.++..++-.++.|+.- .-...+.+-..|+ .|.+.| ....+++
T Consensus 787 ~~lg~r-~kp---y--lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEv 857 (1172)
T KOG0213|consen 787 NALGGR-VKP---Y--LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEV 857 (1172)
T ss_pred HHHhhc-ccc---c--hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHH
Confidence 533221 112 1 246677888999999999999999988888741 0011122222333 366777 4778888
Q ss_pred hhhhHHHHhhhhcCCc--cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647 325 LIPVLRSLGNLVAGDS--STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL 402 (530)
Q Consensus 325 ~~~al~~L~nl~~~~~--~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~ 402 (530)
+-..+.+|..|+..-. ..+..+ .+++|.|..+|.+.+..|+.+++-.++.|+..+++.+..=-=..+---
T Consensus 858 LgsILgAikaI~nvigm~km~pPi--------~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfe 929 (1172)
T KOG0213|consen 858 LGSILGAIKAIVNVIGMTKMTPPI--------KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFE 929 (1172)
T ss_pred HHHHHHHHHHHHHhccccccCCCh--------hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHH
Confidence 8888887777764321 111122 379999999999999999999999999999876664322100013335
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc--------------------------CChHHHH
Q 009647 403 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR--------------------------GCLSGFI 456 (530)
Q Consensus 403 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~--------------------------g~i~~L~ 456 (530)
|+++|...+..+|+.|.-+++.++..- | | ++.+..|++. .++|.|.
T Consensus 930 LlelLkahkK~iRRaa~nTfG~IakaI----G-P---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalm 1001 (1172)
T KOG0213|consen 930 LLELLKAHKKEIRRAAVNTFGYIAKAI----G-P---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALM 1001 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhc----C-H---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHH
Confidence 778888888899999999999887531 1 2 3444444332 3567777
Q ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 457 DLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 457 ~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
+-...++..++.-+|.++.-+++...+ -..+.| .-..+.|+.-..+.+.--++.|..++.+.
T Consensus 1002 neYrtPe~nVQnGVLkalsf~Feyige-mskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1002 NEYRTPEANVQNGVLKALSFMFEYIGE-MSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred hhccCchhHHHHhHHHHHHHHHHHHHH-HhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 766667777888888888877764321 011111 12234555555666666666677666654
No 78
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00038 Score=73.65 Aligned_cols=278 Identities=17% Similarity=0.169 Sum_probs=175.6
Q ss_pred CCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHh
Q 009647 149 GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR 228 (530)
Q Consensus 149 ~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ 228 (530)
+-.+-++..||.++..+-+-++++...++..|. .+|.+ .++-|.-.|+.++-.+|.+.-+. -++-...|++
T Consensus 154 D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~---~LLaD-~splVvgsAv~AF~evCPerldL-----IHknyrklC~ 224 (968)
T KOG1060|consen 154 DPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIK---KLLAD-RSPLVVGSAVMAFEEVCPERLDL-----IHKNYRKLCR 224 (968)
T ss_pred CCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHH---HHhcC-CCCcchhHHHHHHHHhchhHHHH-----hhHHHHHHHh
Confidence 344667778999999999988888776544443 45556 67889999999999999754221 1233455666
Q ss_pred hcCCCChhHHHHHHHHHHHhhcCCCCCchh-----------------------hHHH---hhchHHHHHHHhccCCHHHH
Q 009647 229 MMLPNKGSTVRTAAWALSNLIKGPDPKPAT-----------------------ELIK---VDGLLDAILRHLKRADEELT 282 (530)
Q Consensus 229 lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~-----------------------~~v~---~~~~l~~L~~lL~~~d~~v~ 282 (530)
+|.+-+.=-+..++.+|..-|+..-++|.. .++. ..-.+...-.+|.+.++.+.
T Consensus 225 ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVV 304 (968)
T KOG1060|consen 225 LLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVV 304 (968)
T ss_pred hccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHH
Confidence 665432211222222333223322111100 0000 11233444456778899999
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHH
Q 009647 283 TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 362 (530)
Q Consensus 283 ~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~ 362 (530)
..++.++++++- ... ...++..|+++|. .+..++.-.|..+.-++...+. + +-|++-
T Consensus 305 mA~aql~y~lAP--~~~-----~~~i~kaLvrLLr--s~~~vqyvvL~nIa~~s~~~~~----l----------F~P~lK 361 (968)
T KOG1060|consen 305 MAVAQLFYHLAP--KNQ-----VTKIAKALVRLLR--SNREVQYVVLQNIATISIKRPT----L----------FEPHLK 361 (968)
T ss_pred HHHHhHHHhhCC--HHH-----HHHHHHHHHHHHh--cCCcchhhhHHHHHHHHhcchh----h----------hhhhhh
Confidence 999999999995 222 2345788999885 4456778888888877744321 1 566666
Q ss_pred HHh-ccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 009647 363 KCL-KSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ 440 (530)
Q Consensus 363 ~lL-~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~ 440 (530)
.++ .+.|+ .++.--+.+|+||+..+ ++.. +++-+.....+.+..+...|+.+|+.++....
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~es--ni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~---------- 424 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANES--NISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG---------- 424 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhc--cHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC----------
Confidence 665 34444 67777788999997543 2332 46677788888888888888889988875321
Q ss_pred HHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647 441 EHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 441 ~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~ 480 (530)
=+..-|+..|+.+|.+.|..++..+.-.|..+++.
T Consensus 425 -----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 425 -----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred -----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 12334677788888888877777777777776654
No 79
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.19 E-value=0.00026 Score=71.35 Aligned_cols=186 Identities=24% Similarity=0.296 Sum_probs=142.6
Q ss_pred CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647 178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 257 (530)
Q Consensus 178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~ 257 (530)
..++.+++++.+ ++..++..+++.++.+... -+++++..++.+.++.++..++.+|+.+-
T Consensus 43 ~~~~~~~~~l~~-~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------- 102 (335)
T COG1413 43 EAADELLKLLED-EDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG-------- 102 (335)
T ss_pred hhHHHHHHHHcC-CCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence 367888899988 5899999999998877642 36889999999999999999999877663
Q ss_pred hhHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCc------------cc
Q 009647 258 TELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL------------QL 324 (530)
Q Consensus 258 ~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~------------~v 324 (530)
....+|.++.++. +++..++..+.++|..+-+. ..+..++..+. .... .+
T Consensus 103 -----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~-~~~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 103 -----DPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQ-DEDSGSAAAALDAALLDV 165 (335)
T ss_pred -----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhc-cchhhhhhhhccchHHHH
Confidence 1256778888888 58889999999999988752 12555666663 3221 23
Q ss_pred hhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH
Q 009647 325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL 404 (530)
Q Consensus 325 ~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li 404 (530)
+..+..+++.+- ....++.+...+.+....+|..|..+|+.+.... ..+.+.+.
T Consensus 166 r~~a~~~l~~~~-----------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~ 219 (335)
T COG1413 166 RAAAAEALGELG-----------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLV 219 (335)
T ss_pred HHHHHHHHHHcC-----------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHH
Confidence 445555555542 2347888999999999999999999999997654 23567888
Q ss_pred HHhcCCChhHHHHHHHHHHHhc
Q 009647 405 HLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 405 ~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
..+.+.+..++..++.+|+.+-
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 220 KALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred HHhcCCCHHHHHHHHHHhcccC
Confidence 8899999999999999998874
No 80
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00058 Score=69.75 Aligned_cols=306 Identities=17% Similarity=0.182 Sum_probs=182.6
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC---Cchh
Q 009647 137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE---GEEF 213 (530)
Q Consensus 137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d---~~~~ 213 (530)
+.||.|-+-+...++..-++-.-|.=.--+.-+-+-...+-...+.|+..|++ ++.+|+..+=.+|+++-.+ +|..
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD-~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD-SSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 34455554444445444445556654433332222222222478888999988 7889998887777665431 2221
Q ss_pred HHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHH-HHHHHHH---HH
Q 009647 214 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEE-LTTEVAW---VV 289 (530)
Q Consensus 214 r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~-v~~~a~~---~L 289 (530)
+--...++.++..+.++++.++..|..-+..+..-..+.. +...++++..++.++.+.++. +...+.. .+
T Consensus 246 ---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~---l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 246 ---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL---LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL 319 (675)
T ss_pred ---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch---hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence 1223468888999999999998766555555553321111 223467788888888766653 3322221 23
Q ss_pred HHhhcCCchhHHHHHhc-CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC
Q 009647 290 VYLSALSNVATSLLVKS-GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE 368 (530)
Q Consensus 290 ~~L~~~~~~~~~~i~~~-g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~ 368 (530)
..+.. .....+. ++- .++..+..++ .++..+.+..++.-+.-+-...+.+.-... ..+.+.|..-|++.
T Consensus 320 ~~l~s-~~~~~~~-id~~~ii~vl~~~l-~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-------~~if~tLL~tLsd~ 389 (675)
T KOG0212|consen 320 LKLVS-SERLKEE-IDYGSIIEVLTKYL-SDDREETRIAVLNWIILLYHKAPGQLLVHN-------DSIFLTLLKTLSDR 389 (675)
T ss_pred HHHHh-hhhhccc-cchHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHhhCcchhhhhc-------cHHHHHHHHhhcCc
Confidence 33332 1111111 332 3556677777 477788888888888888776666654443 46899999999999
Q ss_pred cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647 369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448 (530)
Q Consensus 369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~ 448 (530)
+..|...+...+++||...... .. -.++..|++++.....-+...+...+..+|.- +--
T Consensus 390 sd~vvl~~L~lla~i~~s~~~~--~~--~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l-----------------L~a 448 (675)
T KOG0212|consen 390 SDEVVLLALSLLASICSSSNSP--NL--RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL-----------------LNA 448 (675)
T ss_pred hhHHHHHHHHHHHHHhcCcccc--cH--HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH-----------------hCH
Confidence 9999999999999998764321 01 11344555555555555666777777766642 112
Q ss_pred cCChHHHHhhhcc-CCHHHHHHHHHHHHHHHcc
Q 009647 449 RGCLSGFIDLVRS-ADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 449 ~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~ 480 (530)
..+...+..+|.. +|.+....-.++|..++-.
T Consensus 449 E~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlT 481 (675)
T KOG0212|consen 449 ERIYRSIADILEREENLKFASTMVQALNTILLT 481 (675)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHhhhcc
Confidence 2345667777765 4556666666777777643
No 81
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=0.0019 Score=67.12 Aligned_cols=298 Identities=18% Similarity=0.161 Sum_probs=183.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHH-HHHHHHHHhc-CChhhHHhhcCC
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAA-GKQEETKALLPA 179 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~e-A~~~L~nia~-~~~~~~~~i~~~ 179 (530)
.+.+++...+..|...+..+.. +..+....+.+.+..|...+....+. ..+| ++.+...... -.+...-.++..
T Consensus 142 ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~~~-~~re~~~~a~~~~~~~Lg~~~EPyiv~~ 217 (569)
T KOG1242|consen 142 LLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKKSA-LNREAALLAFEAAQGNLGPPFEPYIVPI 217 (569)
T ss_pred HhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccchh-hcHHHHHHHHHHHHHhcCCCCCchHHhh
Confidence 3457788888888888887742 34556666788888888888754432 3344 2222222221 112233344467
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647 180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 259 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 259 (530)
+|.++.-..+ ....||+.|..+...+..--+... -.-.+|+++.-+.........+++..++.+.... |.. .+
T Consensus 218 lp~il~~~~d-~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~q-Ls 290 (569)
T KOG1242|consen 218 LPSILTNFGD-KINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQ-LS 290 (569)
T ss_pred HHHHHHHhhc-cchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHH-HH
Confidence 7777777766 567888888877766553211111 1113444444443335566778888888887653 332 22
Q ss_pred HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
. ....++|.+...|.+..++++..+..++..++.- ++..++ -.+|.|++.+. +++- -...++..|+.-..-
T Consensus 291 ~-~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~-dp~~-~~~e~~~~L~~ttFV 362 (569)
T KOG1242|consen 291 L-CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALA-DPSC-YTPECLDSLGATTFV 362 (569)
T ss_pred H-HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhc-Cccc-chHHHHHhhcceeee
Confidence 2 2478999999999999999999999999988862 111222 24677888773 3321 234556666543221
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC--HHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS--VEHKQLIHSSEALALLLHLLSTSPFDIKK 416 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~--~~~~~~li~~~~l~~Li~lL~~~~~~v~~ 416 (530)
....... + .-.+|.|.+-+...+..+++.++.++.|++.-- +..+...+.. ++|-|-..+.+..+++|.
T Consensus 363 ~~V~~ps-L-------almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~ 433 (569)
T KOG1242|consen 363 AEVDAPS-L-------ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRA 433 (569)
T ss_pred eeecchh-H-------HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHH
Confidence 1111100 1 114455555555567789999999999998753 4444444432 677777777788999999
Q ss_pred HHHHHHHHhcC
Q 009647 417 EVAYVLGNLCV 427 (530)
Q Consensus 417 eA~~aL~nl~~ 427 (530)
.|+.+|+-+..
T Consensus 434 vaarAL~~l~e 444 (569)
T KOG1242|consen 434 VAARALGALLE 444 (569)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 82
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00014 Score=74.03 Aligned_cols=381 Identities=15% Similarity=0.137 Sum_probs=213.0
Q ss_pred CCCCHHHHHHHHHHHHHH---HcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcC-C
Q 009647 104 GKGAMQKRVNALRELRRL---LSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-A 179 (530)
Q Consensus 104 ~s~d~~~~~~a~~~lr~l---ls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~-~ 179 (530)
.+++...+..++..+... |..+.. -.-.+++|+.+.++...+ ..+++.|+..|.|++..-.......++ +
T Consensus 53 ~s~~~n~rkGgLiGlAA~~iaLg~~~~-----~Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~~v~~~Fn~i 126 (675)
T KOG0212|consen 53 YSPHANMRKGGLIGLAAVAIALGIKDA-----GYLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKGEVLVYFNEI 126 (675)
T ss_pred cCcccccccchHHHHHHHHHHhccccH-----HHHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhccCcccchHHH
Confidence 455554444555555444 332221 134788999999998655 346677999999988432211111122 3
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH-HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN-VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~-~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
...+.++..+ ++..|+. ++..+-.+..|-..-++ .+--.+.||.|-.-+...++..+...+.-+.-|-.- |..
T Consensus 127 FdvL~klsaD-sd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~----P~~ 200 (675)
T KOG0212|consen 127 FDVLCKLSAD-SDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV----PDL 200 (675)
T ss_pred HHHHHHHhcC-Ccccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC----CcH
Confidence 3444454444 4444433 33333333222111111 111122344444444455777777666556655432 234
Q ss_pred hHHH-hhchHHHHHHHhccCCHHHHHHHHHHHHHhhc---CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhh
Q 009647 259 ELIK-VDGLLDAILRHLKRADEELTTEVAWVVVYLSA---LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN 334 (530)
Q Consensus 259 ~~v~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~---~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~n 334 (530)
+++. ...+++.|..+|.++.++|+.-+-.+++.... ++++.. --...++.++..+ .++++.++..|+.-|..
T Consensus 201 ~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~e 276 (675)
T KOG0212|consen 201 EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHL-QSSEPEIQLKALTWIQE 276 (675)
T ss_pred HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---Ccccchhhccccc-cCCcHHHHHHHHHHHHH
Confidence 4432 34677778888999999998777666655542 122221 1134667777777 47888888888888888
Q ss_pred hhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh-HHHHHHHH---HHHHhcCCHHHHHHHHhC-CcHHHHHHHhcC
Q 009647 335 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWV---LSNIAAGSVEHKQLIHSS-EALALLLHLLST 409 (530)
Q Consensus 335 l~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~-i~~~A~~~---Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~ 409 (530)
++.-.....-.. -.|++..+.+++.+..+. ++..|.-+ +..+.. ++...+. ++. .++..|...+.+
T Consensus 277 fV~i~g~~~l~~-------~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~ 347 (675)
T KOG0212|consen 277 FVKIPGRDLLLY-------LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSD 347 (675)
T ss_pred HhcCCCcchhhh-------hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhc
Confidence 876554433222 246778888888776653 44433322 222222 1111111 343 357778888899
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchh-
Q 009647 410 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTK- 488 (530)
Q Consensus 410 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~- 488 (530)
+..+.|-.+..-+..+-... |+++ ......+.+.|..-|...+.+++..+|..+.+|+.......+++
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~------p~ql-----~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~f 416 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKA------PGQL-----LVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKF 416 (675)
T ss_pred chHHHHHHHHHHHHHHHhhC------cchh-----hhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHH
Confidence 99999988887777775432 2221 22245677888888999999999999999999986543311111
Q ss_pred ------------HHHHhchHHHHHHHhc-CCcHHHHHHHHHHHHh
Q 009647 489 ------------LVEREDGIDAMERFQF-HENEDLRNMANGLVDK 520 (530)
Q Consensus 489 ------------~i~~~ggl~~L~~L~~-~~~~~i~~~A~~il~~ 520 (530)
.+-+.-|-=.|.+|.. -+.+.||+--..||++
T Consensus 417 l~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~ 461 (675)
T KOG0212|consen 417 LLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER 461 (675)
T ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 1112222223333322 2445677777777775
No 83
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.10 E-value=0.00091 Score=67.73 Aligned_cols=239 Identities=17% Similarity=0.156 Sum_probs=171.5
Q ss_pred hchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC-CccchhhhHHHHhhhhcCCccc
Q 009647 264 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSST 342 (530)
Q Consensus 264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~~~~~ 342 (530)
....+.+..++-+++.+++..+..++.|+.. +.+..+.+.+.++--.++.-|.... +..=++.|++.+..+.......
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 4455666655656669999999999999997 5567788888887777777775332 2233568999998888653221
Q ss_pred cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647 343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422 (530)
Q Consensus 343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL 422 (530)
+. + ..+++..++.+..+.+...+..|..+|.-++-.+|+ .+..+|++..|++.+.++..++....+.++
T Consensus 103 -~~-~------~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l 171 (371)
T PF14664_consen 103 -KE-I------PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTL 171 (371)
T ss_pred -cc-C------CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence 11 1 357999999999999999999999999999887765 466899999999999888778888899999
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHHHhc----CChHHHHhhh---ccCCH--HHHHHHHHHHHHHHccCCCCcchhHHHHh
Q 009647 423 GNLCVSPTEGEGKPKLIQEHLVSLVGR----GCLSGFIDLV---RSADI--EAARLGLQFMELVLRGMPNHEGTKLVERE 493 (530)
Q Consensus 423 ~nl~~~~~~~~~~~~~~~~~~~~l~~~----g~i~~L~~lL---~~~d~--~i~~~~L~~L~~il~~~~~~~~~~~i~~~ 493 (530)
..+...+. ..+++... -++.++.+.- ..++. +-...+-.++..+|+.++. -........
T Consensus 172 L~lLd~p~-----------tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G-Ll~l~~~~~ 239 (371)
T PF14664_consen 172 LYLLDSPR-----------TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG-LLYLSMNDF 239 (371)
T ss_pred HHHhCCcc-----------hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc-eeeeecCCc
Confidence 99987542 23444432 2345555541 11233 3566777888888887653 112222344
Q ss_pred chHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCC
Q 009647 494 DGIDAMERFQFHENEDLRNMANGLVDKYFGEDY 526 (530)
Q Consensus 494 ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~ 526 (530)
.|+..|......+++++++....++-..|.-..
T Consensus 240 ~~lksLv~~L~~p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 240 RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 688888888889999999999988888776543
No 84
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.08 E-value=7.9e-06 Score=58.51 Aligned_cols=55 Identities=33% Similarity=0.496 Sum_probs=48.1
Q ss_pred HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHh
Q 009647 370 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL 425 (530)
Q Consensus 370 ~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl 425 (530)
+.+|..|+|+|++++.+.++..+.... .++|.|+.+|.+++..||..|+|+|+||
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998888777776544 4899999999999999999999999985
No 85
>PF05536 Neurochondrin: Neurochondrin
Probab=98.07 E-value=0.0003 Score=74.89 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=161.6
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch---hHHHHHhcCChhhhHhhcCC-------CChhHHHHHHHHHHHhh
Q 009647 180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE---FRNVLLSQGALPPLARMMLP-------NKGSTVRTAAWALSNLI 249 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~---~r~~~~~~g~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~ 249 (530)
+...+.+|++ .+.+=+-.++-.+.+++..++. .+..+.+.=+.+.|-++|.+ +....+.-++-.|+.+|
T Consensus 7 l~~c~~lL~~-~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 7 LEKCLSLLKS-ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHhcc-CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4556677777 4456677777888888875553 23457777677888899986 23577888888999999
Q ss_pred cCCCCCchhhHHHhhchHHHHHHHhccCCH-HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647 250 KGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328 (530)
Q Consensus 250 ~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a 328 (530)
+.++-....++ -+-+|.|+..+...+. ++..+++.+|..++ .+++..+.+++.|+++.|++.+. + .+.....|
T Consensus 86 ~~~~~a~~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~-~-~~~~~E~A 159 (543)
T PF05536_consen 86 RDPELASSPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIP-N-QSFQMEIA 159 (543)
T ss_pred CChhhhcCHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHH-h-CcchHHHH
Confidence 85332222332 3789999999987777 99999999999999 58888999999999999999985 3 55667899
Q ss_pred HHHHhhhhcCCccc-----cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHH-HHHHH----hCC
Q 009647 329 LRSLGNLVAGDSST-----ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH-KQLIH----SSE 398 (530)
Q Consensus 329 l~~L~nl~~~~~~~-----~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~-~~~li----~~~ 398 (530)
+.++.+++...... .+.+ ..+++.+...+...+...+-++|..|+++-...+.. ....- -..
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l--------~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~ 231 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLL--------HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSD 231 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHH--------HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHH
Confidence 99999998765421 1111 246677777777666677889999999987765211 11111 112
Q ss_pred cHHHHHHHhcCC-ChhHHHHHHHHHHHhcC
Q 009647 399 ALALLLHLLSTS-PFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 399 ~l~~Li~lL~~~-~~~v~~eA~~aL~nl~~ 427 (530)
+..-+..+|++. .+.-|..|..+.+.+..
T Consensus 232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 232 LRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455566677654 34555556555555543
No 86
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0041 Score=66.09 Aligned_cols=287 Identities=13% Similarity=0.114 Sum_probs=184.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647 94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 173 (530)
Q Consensus 94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~ 173 (530)
.+|++++. |+.....++|++.+..++.++.+. +...|..|.-..+.+ .++++-..-.|...|..+++..
T Consensus 38 ~dL~~lLd---Snkd~~KleAmKRIia~iA~G~dv-------S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA 106 (968)
T KOG1060|consen 38 DDLKQLLD---SNKDSLKLEAMKRIIALIAKGKDV-------SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA 106 (968)
T ss_pred HHHHHHHh---ccccHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce
Confidence 57777775 888889999999999998888763 346788888887665 5676666667777776554322
Q ss_pred HhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 174 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 174 ~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
+=-|..|-+-|.+ +++.+|-.|+.+|+.|=. -++.-=++-.+-++..++.+.+++.|+.++-.|.+-+
T Consensus 107 ---LLSIntfQk~L~D-pN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd- 174 (968)
T KOG1060|consen 107 ---LLSINTFQKALKD-PNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD- 174 (968)
T ss_pred ---eeeHHHHHhhhcC-CcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-
Confidence 1256777788888 899999988888886543 1221111222334455678999999999999998754
Q ss_pred CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647 254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~ 333 (530)
+.. ....+..+-.||.+.++-|.-.|..++-.+|- ++.+.+ ++-..++.++|. .-+..-+.-++..|-
T Consensus 175 ~e~------k~qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~-dvdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 175 PEQ------KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLP-DVDEWGQVVLINMLT 242 (968)
T ss_pred hhh------HHHHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhcc-chhhhhHHHHHHHHH
Confidence 221 23556677788888899999999999888874 444444 234556666553 333333444444444
Q ss_pred hhhcCC---c----------------------cccchhcccCCCcch-hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC
Q 009647 334 NLVAGD---S----------------------STISDVLVPGHGITD-QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 334 nl~~~~---~----------------------~~~~~~i~~g~~~~~-~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~ 387 (530)
..+... + .++-.+.+. +. -++...-.+|.+.++.|...+|.+...++-..
T Consensus 243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~----D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~ 318 (968)
T KOG1060|consen 243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDP----DLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN 318 (968)
T ss_pred HHHHhcCCCccccccccccCcccccccccccccCCCcccCc----cHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence 433211 0 000011110 11 14566677888889999999999998886433
Q ss_pred HHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 388 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 388 ~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
+.. .++.+|+++|.+.. .+|.-.+..|..++.
T Consensus 319 --~~~-----~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~ 350 (968)
T KOG1060|consen 319 --QVT-----KIAKALVRLLRSNR-EVQYVVLQNIATISI 350 (968)
T ss_pred --HHH-----HHHHHHHHHHhcCC-cchhhhHHHHHHHHh
Confidence 222 35678999886654 455555555555543
No 87
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.012 Score=61.92 Aligned_cols=301 Identities=14% Similarity=0.169 Sum_probs=179.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647 182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATE 259 (530)
Q Consensus 182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~ 259 (530)
.+-+=|.+ .++....-|+.+++|+-+ -+++..+.. -|+ ++|-++ ..-++..++.||..|.+.. | +
T Consensus 115 ~iknDL~s-rn~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~s-p----D 181 (938)
T KOG1077|consen 115 SIKNDLSS-RNPTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKS-P----D 181 (938)
T ss_pred HHHhhhhc-CCcHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcC-c----c
Confidence 33344444 567788889999999875 344443332 133 555554 3567888999999998752 3 3
Q ss_pred HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh------------cCCCccchhh
Q 009647 260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA------------TSNSLQLLIP 327 (530)
Q Consensus 260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~------------~~~~~~v~~~ 327 (530)
.+...+....++.+|.+.+-.+...+...+-.|+...++....-+- -.+..|.+... .-+.|.+...
T Consensus 182 l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 4445688999999999888888888888888888755543321110 11222222211 1255777888
Q ss_pred hHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc----Cc---HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcH
Q 009647 328 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS----EH---RVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL 400 (530)
Q Consensus 328 al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~----~~---~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l 400 (530)
++|.|.+.-...|.-+..-+ ..++..++...+. .+ ...+...++-.-+++.+-+..-+.+.. .+
T Consensus 261 l~rlLq~~p~~~D~~~r~~l-------~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~ 331 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARL-------NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AV 331 (938)
T ss_pred HHHHHHhCCCCCCchHHHHH-------HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HH
Confidence 99999988555444333221 1244444443331 11 122333334444554443222233333 46
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-cCCHHHHHHHHHHHHHHHc
Q 009647 401 ALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLR 479 (530)
Q Consensus 401 ~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-~~d~~i~~~~L~~L~~il~ 479 (530)
..|-++|.+.+..+|.-|...++.++... .....+... ...++..|+ ..|..+++.+++.|+.++.
T Consensus 332 ~~Lg~fls~rE~NiRYLaLEsm~~L~ss~------------~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD 398 (938)
T KOG1077|consen 332 NQLGQFLSHRETNIRYLALESMCKLASSE------------FSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCD 398 (938)
T ss_pred HHHHHHhhcccccchhhhHHHHHHHHhcc------------chHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 67888999999999999999999998642 111222222 567788888 6899999999999999985
Q ss_pred cCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647 480 GMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 480 ~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~ 523 (530)
. .+.+.|. .+-++.|+..-..--+++.-++.-+=|+|-.
T Consensus 399 ~----~Nak~IV-~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 399 V----SNAKQIV-AELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred h----hhHHHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 3 2333332 2334444433333345666666666666643
No 88
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0016 Score=61.98 Aligned_cols=294 Identities=17% Similarity=0.188 Sum_probs=173.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHH-hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL-SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 259 (530)
Q Consensus 181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 259 (530)
..++.+|.+ .++.|+..|+..+.++.+. ..+...- +.-.++.+.+++...++ .+.|+.+|.|++... ..++
T Consensus 6 ~elv~ll~~-~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~---~l~~ 77 (353)
T KOG2973|consen 6 VELVELLHS-LSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE---ELRK 77 (353)
T ss_pred HHHHHHhcc-CChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH---HHHH
Confidence 356788877 7899999999999998874 2222211 23457778888887666 788999999999753 2233
Q ss_pred HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhc-----CchHHHHHHHhcCCCc--cchhhhHHHH
Q 009647 260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS-----GVLQLLVERLATSNSL--QLLIPVLRSL 332 (530)
Q Consensus 260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~-----g~l~~Lv~lL~~~~~~--~v~~~al~~L 332 (530)
.+.. .++..++..+.++.......+|..|+|++..++.....+... ..+..++..+.+++.. .-.......+
T Consensus 78 ~ll~-~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 78 KLLQ-DLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHHH-HHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 3332 377777777777767788889999999998554433333211 2333444433322211 1122344455
Q ss_pred hhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH-HHHHHHHHHHhcCCHHHHHHHHh-CCcHHHHHHHhcCC
Q 009647 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK-KEAAWVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTS 410 (530)
Q Consensus 333 ~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~-~~A~~~Lsnl~~~~~~~~~~li~-~~~l~~Li~lL~~~ 410 (530)
+||+...... ..+++. +.-....+..+-+ .+..+| ...+.+|-|++.....+-..+-. .+++|.++-=+-.+
T Consensus 157 ~nls~~~~gR-~l~~~~----k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagp 230 (353)
T KOG2973|consen 157 ANLSQFEAGR-KLLLEP----KRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGP 230 (353)
T ss_pred HHHhhhhhhh-hHhcch----hhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCc
Confidence 5555443221 112211 0012333444444 455555 45678999998876544433322 24556554444332
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-----cCCHHHHHHHHHHHHHHHccCCCCc
Q 009647 411 PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-----SADIEAARLGLQFMELVLRGMPNHE 485 (530)
Q Consensus 411 ~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-----~~d~~i~~~~L~~L~~il~~~~~~~ 485 (530)
+ +.-.+ ... -+|.=+++|. .+|+.++...+++|..++.. ..
T Consensus 231 e-e~sEE------------------------dm~------~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT---~~ 276 (353)
T KOG2973|consen 231 E-ELSEE------------------------DMA------KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT---RA 276 (353)
T ss_pred c-ccCHH------------------------HHh------cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh---hH
Confidence 2 11100 000 1122223443 46889999999999888743 24
Q ss_pred chhHHHHhchHHHHHHHhc-CCcHHHHHHHHHHHHhhcC
Q 009647 486 GTKLVEREDGIDAMERFQF-HENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 486 ~~~~i~~~ggl~~L~~L~~-~~~~~i~~~A~~il~~~f~ 523 (530)
++..+..-|+-..+..|-. .+++++.+.+..+.+-.-.
T Consensus 277 GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 277 GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 6788888999999988754 4688898888777666555
No 89
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.04 E-value=0.0021 Score=64.84 Aligned_cols=249 Identities=26% Similarity=0.282 Sum_probs=167.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
.++.+.+.+. +.+...+..|...+..+ + ..-.+|.+..+|...+ +.++..|+.+|.++-...
T Consensus 44 ~~~~~~~~l~---~~~~~vr~~aa~~l~~~---~---------~~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~~-- 105 (335)
T COG1413 44 AADELLKLLE---DEDLLVRLSAAVALGEL---G---------SEEAVPLLRELLSDED-PRVRDAAADALGELGDPE-- 105 (335)
T ss_pred hHHHHHHHHc---CCCHHHHHHHHHHHhhh---c---------hHHHHHHHHHHhcCCC-HHHHHHHHHHHHccCChh--
Confidence 3455555554 66788888888875443 1 1237899999998766 456667888776665321
Q ss_pred hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCCh------------hHHH
Q 009647 172 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG------------STVR 239 (530)
Q Consensus 172 ~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~------------~~~~ 239 (530)
++|.|+.+|...++..++..|+|+|+.+-.. ..+.+++..+++... .++.
T Consensus 106 -------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 106 -------AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred -------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 6889999998557899999999999997642 237788888876542 2334
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC
Q 009647 240 TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS 319 (530)
Q Consensus 240 ~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~ 319 (530)
.+.-.|+.+- ....++.+...+...+..++..+..+|..+.... ..+.+.+...+ ..
T Consensus 168 ~a~~~l~~~~-------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~-~~ 224 (335)
T COG1413 168 AAAEALGELG-------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKAL-SD 224 (335)
T ss_pred HHHHHHHHcC-------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHh-cC
Confidence 4444443332 2345677788888888889999999988888633 23445566666 57
Q ss_pred CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 009647 320 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA 399 (530)
Q Consensus 320 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~ 399 (530)
.+..++..++.++|.+-.. ..++.+...+...+..++..+...+... .. ...
T Consensus 225 ~~~~vr~~~~~~l~~~~~~-----------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~---------~~~ 276 (335)
T COG1413 225 ESLEVRKAALLALGEIGDE-----------------EAVDALAKALEDEDVILALLAAAALGAL--DL---------AEA 276 (335)
T ss_pred CCHHHHHHHHHHhcccCcc-----------------hhHHHHHHHHhccchHHHHHHHHHhccc--Cc---------hhh
Confidence 7788888888888876422 3667778888877776666655555411 11 113
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 400 LALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 400 l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
...+...+.+....++.++++++.-+..
T Consensus 277 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 277 ALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 4566677777777888888888766643
No 90
>PF05536 Neurochondrin: Neurochondrin
Probab=98.04 E-value=0.00033 Score=74.58 Aligned_cols=241 Identities=20% Similarity=0.183 Sum_probs=160.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcH--HHHHHcCCHHHHHHHhcCCC-----ChHHHH-HHHHHHH
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPI--ETALKAGAIPVLVQCLAFGS-----PDEQLL-EAAWCLT 163 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~--~~ii~~g~v~~Lv~lL~~~~-----~~~~~~-eA~~~L~ 163 (530)
.+++..++++ +.+.+.++.++-.+.+++...+.... ..+.++=+.+-+-++|.+.. ++..-. -|..+|+
T Consensus 6 ~l~~c~~lL~---~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 6 SLEKCLSLLK---SADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHhc---cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 4566666665 77788999999999999875543222 24667666777888887632 222223 3888888
Q ss_pred HHhcCChhh-HHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHH
Q 009647 164 NIAAGKQEE-TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAA 242 (530)
Q Consensus 164 nia~~~~~~-~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~ 242 (530)
.++....-. -..+++.||.|++.+.++++..+...|..+|..|+. +++.+..+++.|+++.|+..+.+ .+...+.+.
T Consensus 83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 83 AFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 888743221 234558999999999885555899999999999995 88999999999999999999877 556677888
Q ss_pred HHHHHhhcCCCCCchhh-HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh-HHHHHh----cCchHHHHHHH
Q 009647 243 WALSNLIKGPDPKPATE-LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA-TSLLVK----SGVLQLLVERL 316 (530)
Q Consensus 243 ~~L~nL~~~~~~~~~~~-~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~-~~~i~~----~g~l~~Lv~lL 316 (530)
..+.+++.....+...+ .-....+++.+...+...........|..|..+-...+.. ...... ..+...+..+|
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 88888775432211111 0012355666777776666677778888888887644211 111111 12334455555
Q ss_pred hcCCCccchhhhHHHHhhhhc
Q 009647 317 ATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 317 ~~~~~~~v~~~al~~L~nl~~ 337 (530)
.+...+.-+.+++...+.+..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 444456667777777777763
No 91
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.0081 Score=57.71 Aligned_cols=315 Identities=15% Similarity=0.137 Sum_probs=195.3
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHcCCCCC---cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc
Q 009647 101 AYHGKGAMQKRVNALRELRRLLSRFEFP---PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL 177 (530)
Q Consensus 101 ~~l~s~d~~~~~~a~~~lr~lls~~~~~---~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~ 177 (530)
.++..+|..++.-+++.+-.++...+.. .+..++++|+.|.++.++...+ +++-..|...+..|+... .....++
T Consensus 89 rGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialfp-aaleaiF 166 (524)
T KOG4413|consen 89 RGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALFP-AALEAIF 166 (524)
T ss_pred hcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcH-HHHHHhc
Confidence 3566788888999999988888755433 3345668999999999998665 556566788888888543 3444444
Q ss_pred C--CcH--HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCC
Q 009647 178 P--ALP--LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGP 252 (530)
Q Consensus 178 ~--~v~--~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~ 252 (530)
. ... .+..+-.. -+.-+|......+-.|.+-+++....+-.+|.+..|..-++. .|.-++.++.-....|+.-.
T Consensus 167 eSellDdlhlrnlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete 245 (524)
T KOG4413|consen 167 ESELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE 245 (524)
T ss_pred ccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh
Confidence 1 211 12222222 234566667777778887788888999999999999988886 57778888888888888643
Q ss_pred CCCchhhHHHhhchHHHHHHHhccCC--HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHH-------HHHHHhcCCCcc
Q 009647 253 DPKPATELIKVDGLLDAILRHLKRAD--EELTTEVAWVVVYLSALSNVATSLLVKSGVLQL-------LVERLATSNSLQ 323 (530)
Q Consensus 253 ~~~~~~~~v~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~-------Lv~lL~~~~~~~ 323 (530)
. .++++...|.+..+..++.-.| |--...++.....+.. .+.+-.+.....+.. ..+.+ ..+++.
T Consensus 246 H---greflaQeglIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicealiiaidgsfEmi-EmnDpd 319 (524)
T KOG4413|consen 246 H---GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEALIIAIDGSFEMI-EMNDPD 319 (524)
T ss_pred h---hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHHHHHHHHhhHHhh-hcCCch
Confidence 2 2456667899999999987443 3222223333333321 111211112222222 23333 467888
Q ss_pred chhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHH-HHHhccCcHhHHHHHHHHHHHHhcC---CHHHH--------
Q 009647 324 LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL-VKCLKSEHRVLKKEAAWVLSNIAAG---SVEHK-------- 391 (530)
Q Consensus 324 v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L-~~lL~~~~~~i~~~A~~~Lsnl~~~---~~~~~-------- 391 (530)
.+..|+.++|-+-+.. +-.+.++..| ......+ .+....+...-+..++.+|.||+.. .++++
T Consensus 320 aieaAiDalGilGSnt-eGadlllkTg----ppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeer 394 (524)
T KOG4413|consen 320 AIEAAIDALGILGSNT-EGADLLLKTG----PPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEER 394 (524)
T ss_pred HHHHHHHHHHhccCCc-chhHHHhccC----ChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHH
Confidence 8899999999876543 3444555433 1123333 3333333334567778888888753 22221
Q ss_pred -H-HHHhC-------CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647 392 -Q-LIHSS-------EALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 392 -~-~li~~-------~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 429 (530)
. .+.++ .-+.....+++-+.++++..|..++..++..+
T Consensus 395 lrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqP 441 (524)
T KOG4413|consen 395 LRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP 441 (524)
T ss_pred HHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc
Confidence 1 12221 12344556677788999999999999998754
No 92
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.00 E-value=2.6e-05 Score=64.84 Aligned_cols=131 Identities=17% Similarity=0.090 Sum_probs=106.8
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647 180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 259 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 259 (530)
+..|+.-.....+.+-+++..--|.|.|-| |.+-..+.+..++..++..|..++..+++.++..|+|+|-.+ ...+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~---~n~~ 93 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK---TNAK 93 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh---HHHH
Confidence 334444444457889999999999999985 677788999999999999999999999999999999999653 3455
Q ss_pred HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHH
Q 009647 260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE 314 (530)
Q Consensus 260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~ 314 (530)
.|.+.+++|.++..+.++.+.+...++.++.+|+.+.......+....++..+.+
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 7778999999999999999999999999999999876666666665555544443
No 93
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0023 Score=69.67 Aligned_cols=328 Identities=15% Similarity=0.164 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHH-----HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHH
Q 009647 109 QKRVNALRELRRLLSRFEFPPIETAL-----KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPL 182 (530)
Q Consensus 109 ~~~~~a~~~lr~lls~~~~~~~~~ii-----~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~ 182 (530)
+...-++.+|+++++..++ ...++ =-|..|.+..+|.....+.+|.-|..++..+.+..+-.....- +.+..
T Consensus 1740 ~~v~m~LtAL~Nli~~nPd--lasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPD--LASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcc--hhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHH
Confidence 3456688999999876542 22222 2478888888888655566777777777766665543333333 57788
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCC--CCCchhh
Q 009647 183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGP--DPKPATE 259 (530)
Q Consensus 183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~--~~~~~~~ 259 (530)
|+.+|.+ .+..++.++..|..+++ +++.-...+++|++..+..++. +.++..+.+++-.|..|...+ .|+....
T Consensus 1818 LL~lLHS--~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1818 LLTLLHS--QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 8888865 57899999999999998 6788888999999999988776 456778888888999987543 2332211
Q ss_pred HHHhhchHH------------HHHHHhc--cCCHHH------HHHHHHHHHHhhc--------CC------chh------
Q 009647 260 LIKVDGLLD------------AILRHLK--RADEEL------TTEVAWVVVYLSA--------LS------NVA------ 299 (530)
Q Consensus 260 ~v~~~~~l~------------~L~~lL~--~~d~~v------~~~a~~~L~~L~~--------~~------~~~------ 299 (530)
. -.++| ..++.+. +++|++ +......+..+.. ++ ++.
T Consensus 1895 L---~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~E 1971 (2235)
T KOG1789|consen 1895 L---IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSE 1971 (2235)
T ss_pred h---HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhh
Confidence 1 12333 2333333 223321 1111122222210 00 000
Q ss_pred ------------HHHHH------------hcCchHHHHHHHhcCCCcc--chhhhHHHHhhhhcCCccccchhcccCCCc
Q 009647 300 ------------TSLLV------------KSGVLQLLVERLATSNSLQ--LLIPVLRSLGNLVAGDSSTISDVLVPGHGI 353 (530)
Q Consensus 300 ------------~~~i~------------~~g~l~~Lv~lL~~~~~~~--v~~~al~~L~nl~~~~~~~~~~~i~~g~~~ 353 (530)
...+. -.|++.++.+++. .++++ ...-.-.++-.+....+...+.+=
T Consensus 1972 a~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~-~~~peqh~l~lLt~A~V~L~r~hP~LADqip------ 2044 (2235)
T KOG1789|consen 1972 ADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMS-RPTPEQHELDLLTKAFVELVRHHPNLADQLP------ 2044 (2235)
T ss_pred hccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhc-CCCcccchhHHHHHHHHHHHHhCcchhhhCC------
Confidence 00010 1233444455553 22221 222222333334444444444443
Q ss_pred chhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCC
Q 009647 354 TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGE 433 (530)
Q Consensus 354 ~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~ 433 (530)
..|.+|.++..+.+.+..+-+.|+.+|..++... -.+.++.....+..++..+...- +.---|+.+|..+.....
T Consensus 2045 ~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~--- 2119 (2235)
T KOG1789|consen 2045 SLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNT--- 2119 (2235)
T ss_pred CccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhH---
Confidence 2479999999999888888899999999997743 55666666666777888776543 233367788877765321
Q ss_pred CCchhHHHHHHHHHhcCChHHHHhhhccC
Q 009647 434 GKPKLIQEHLVSLVGRGCLSGFIDLVRSA 462 (530)
Q Consensus 434 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~ 462 (530)
.+-+....+.|.++.|+.+|++.
T Consensus 2120 ------~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2120 ------GELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred ------HHHHHHHhccCcHHHHHHHhccc
Confidence 24566777899999999999863
No 94
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.0024 Score=66.39 Aligned_cols=342 Identities=15% Similarity=0.086 Sum_probs=207.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh
Q 009647 97 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL 176 (530)
Q Consensus 97 ~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i 176 (530)
..++..+..+.+..|.....+++.+.......+. .-+.+.+.++++.+.. .-+..|++.+.-+..|.......-
T Consensus 99 ~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~~-~~~~~aa~~~ag~v~g~~i~~~~~ 172 (569)
T KOG1242|consen 99 EILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTKI-AERAGAAYGLAGLVNGLGIESLKE 172 (569)
T ss_pred HHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhccccH-HHHhhhhHHHHHHHcCcHHhhhhh
Confidence 3345555677788888888888888655444433 2345778888886553 345779999999988765443333
Q ss_pred cCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhc---CCCChhHHHHHHHHHHHhhcCCC
Q 009647 177 LPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM---LPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 177 ~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL---~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
.+.+..+.+...+..+..-++.+..+.-..++.-. ...+.++++.+-.++ .+....+++.+..+...+.+.-+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 35666666666653333334323222222221110 112333444444444 45578888888888877775532
Q ss_pred CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647 254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~ 333 (530)
+. . ...++|.++.-+....-.....++..|+.++...+.... ..-..++|.+.+.|. ...++++..+..++-
T Consensus 249 ~~----a--VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~-DT~~evr~a~~~~l~ 320 (569)
T KOG1242|consen 249 AY----A--VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLW-DTKPEVRKAGIETLL 320 (569)
T ss_pred cc----h--hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 22 1 345666666555544445566666677777664444443 344679999999995 678899999888888
Q ss_pred hhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC---CHHHHHHHHhCCcHHHHHHHhcCC
Q 009647 334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTS 410 (530)
Q Consensus 334 nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~---~~~~~~~li~~~~l~~Li~lL~~~ 410 (530)
+++.--+.-- |+ ..+|.|+..+.++...+ .++...|+.-+.- .+.-.. =++|.|.+-+...
T Consensus 321 ~~~svidN~d---I~-------~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLa-----lmvpiL~R~l~eR 384 (569)
T KOG1242|consen 321 KFGSVIDNPD---IQ-------KIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLA-----LMVPILKRGLAER 384 (569)
T ss_pred HHHHhhccHH---HH-------HHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHH-----HHHHHHHHHHhhc
Confidence 8875433221 21 47889999998876332 3344444432221 111111 1456666777778
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647 411 PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 411 ~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~ 481 (530)
+..+++.++.++.|+|.--+ .| .+-..++- .++|.|-..+...+|+++..+..+|..+++..
T Consensus 385 st~~kr~t~~IidNm~~Lve----Dp---~~lapfl~--~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 385 STSIKRKTAIIIDNMCKLVE----DP---KDLAPFLP--SLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred cchhhhhHHHHHHHHHHhhc----CH---HHHhhhHH--HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 88899999999999986321 12 11222221 25666666677778999999999998887643
No 95
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0018 Score=68.37 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=87.7
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG 434 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~ 434 (530)
|.+--++++|++++-++|+.+.-..-.|+.+ +-+.+-.++...+...--. =+....+.|..-..+|..++..
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~------ 389 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVK------ 389 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhc------
Confidence 4555567788888889999888877777654 3232222222111110000 0111223456666666665542
Q ss_pred CchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHH-HHHHHhcCCcHHHHHH
Q 009647 435 KPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNM 513 (530)
Q Consensus 435 ~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~-~L~~L~~~~~~~i~~~ 513 (530)
.| + +...+++.|++.+.+.++..-..+|.++...++..++ .+.. .++ .++.+-.-....+++-
T Consensus 390 Fp----~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--Lr~~-----ii~~l~~~~~~irS~ki~rg 453 (948)
T KOG1058|consen 390 FP----E-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--LRAS-----IIEKLLETFPQIRSSKICRG 453 (948)
T ss_pred Ch----H-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--HHHH-----HHHHHHHhhhhhcccccchh
Confidence 11 1 1345788999999999998888888888888766553 1211 122 1233333456678999
Q ss_pred HHHHHHhhcCCCC
Q 009647 514 ANGLVDKYFGEDY 526 (530)
Q Consensus 514 A~~il~~~f~~~~ 526 (530)
|.+|+-.|...+.
T Consensus 454 alwi~GeYce~~~ 466 (948)
T KOG1058|consen 454 ALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhhhH
Confidence 9999999987655
No 96
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.93 E-value=2.9e-05 Score=61.49 Aligned_cols=87 Identities=28% Similarity=0.407 Sum_probs=70.5
Q ss_pred hHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCH
Q 009647 309 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 388 (530)
Q Consensus 309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~ 388 (530)
++.|++.|..++++.++..++++||++- ...+++.|..++.++++.||..|+++|+.+- +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------------DPEAIPALIELLKDEDPMVRRAAARALGRIG--D- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H-
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C-
Confidence 4678888866889999999999999542 2358999999999999999999999999882 2
Q ss_pred HHHHHHHhCCcHHHHHHHhcCC-ChhHHHHHHHHHH
Q 009647 389 EHKQLIHSSEALALLLHLLSTS-PFDIKKEVAYVLG 423 (530)
Q Consensus 389 ~~~~~li~~~~l~~Li~lL~~~-~~~v~~eA~~aL~ 423 (530)
...++.|.+++.++ +..++..|+++|+
T Consensus 61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23788999988765 5567999999885
No 97
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0042 Score=67.83 Aligned_cols=327 Identities=13% Similarity=0.101 Sum_probs=209.0
Q ss_pred HHHHHHHHhcCChh------hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC
Q 009647 158 AAWCLTNIAAGKQE------ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 231 (530)
Q Consensus 158 A~~~L~nia~~~~~------~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~ 231 (530)
+..+|.|+.+.+++ ....++|..+.++.+|....+++++..|+..+.-+.. +.++-..+...|.+..|+.+|.
T Consensus 1745 ~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred HHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHh
Confidence 88999999987773 2334457889999999887888999999998887776 6788899999998888888886
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCC----chhHHH----
Q 009647 232 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALS----NVATSL---- 302 (530)
Q Consensus 232 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~----~~~~~~---- 302 (530)
+ .++.++-++-+|..|+.. ++...+.. ..|++..+..++- +..+..+..++..|..|.... ...+..
T Consensus 1824 S-~PS~R~~vL~vLYAL~S~--~~i~keA~-~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1824 S-QPSMRARVLDVLYALSSN--GQIGKEAL-EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred c-ChHHHHHHHHHHHHHhcC--cHHHHHHH-hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence 4 568888899999999865 55656654 5788888887765 455788899999999887532 111111
Q ss_pred ------HHhcCchHHHHHHHhc-CCCccchh-hh-----HHHHhhhhcCC--ccccchhc------------------cc
Q 009647 303 ------LVKSGVLQLLVERLAT-SNSLQLLI-PV-----LRSLGNLVAGD--SSTISDVL------------------VP 349 (530)
Q Consensus 303 ------i~~~g~l~~Lv~lL~~-~~~~~v~~-~a-----l~~L~nl~~~~--~~~~~~~i------------------~~ 349 (530)
.+..| -...|..+.. +.++++.. ++ -..+..++..- ..|....+ ..
T Consensus 1900 P~~f~d~~RD~-PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1900 PEIFADSLRDS-PEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred hHHHHHHHhcC-HHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence 11111 1444444432 33444332 11 12222222110 00100000 00
Q ss_pred CC------------------CcchhhHHHHHHHhccCcH--hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647 350 GH------------------GITDQVIAVLVKCLKSEHR--VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST 409 (530)
Q Consensus 350 g~------------------~~~~~~l~~L~~lL~~~~~--~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~ 409 (530)
|. .+-.+.+..+..++...++ ..-.--..++-.+....+.....+-..|-+|.++..+..
T Consensus 1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence 00 0234667777777765543 222222233344445566666777778999999999977
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhH
Q 009647 410 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKL 489 (530)
Q Consensus 410 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~ 489 (530)
.+..+-+.|+.+|-.++.+. -.++.|....++.+++..+. +.+..+..++++|..++....+ .....
T Consensus 2059 ~n~s~P~SaiRVlH~Lsen~-----------~C~~AMA~l~~i~~~m~~mk-K~~~~~GLA~EalkR~~~r~~~-eLVAQ 2125 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSENQ-----------FCCDAMAQLPCIDGIMKSMK-KQPSLMGLAAEALKRLMKRNTG-ELVAQ 2125 (2235)
T ss_pred cCCcCcHHHHHHHHHHhhcc-----------HHHHHHhccccchhhHHHHH-hcchHHHHHHHHHHHHHHHhHH-HHHHH
Confidence 76667788999999997642 35788888888888888776 3455666899999999864332 12223
Q ss_pred HHHhchHHHHHHHh
Q 009647 490 VEREDGIDAMERFQ 503 (530)
Q Consensus 490 i~~~ggl~~L~~L~ 503 (530)
.-.+|-++.|-.|.
T Consensus 2126 ~LK~gLvpyLL~LL 2139 (2235)
T KOG1789|consen 2126 MLKCGLVPYLLQLL 2139 (2235)
T ss_pred HhccCcHHHHHHHh
Confidence 33567667665554
No 98
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0025 Score=61.09 Aligned_cols=305 Identities=15% Similarity=0.128 Sum_probs=183.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHH-HHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009647 96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV-QCLAFGSPDEQLLEAAWCLTNIAAGKQEETK 174 (530)
Q Consensus 96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv-~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~ 174 (530)
++.++..+...|.++.-.|...+.++ +..+ .....++++.....+- .-|.-..++..+......+..|.+-+++...
T Consensus 130 lklildcIggeddeVAkAAiesikri-alfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan 207 (524)
T KOG4413|consen 130 LKLILDCIGGEDDEVAKAAIESIKRI-ALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN 207 (524)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHH-HhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence 34445555678888888888888887 3332 1224455555554322 1111112233344577888888888888777
Q ss_pred hhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHH----HHHH
Q 009647 175 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAA----WALS 246 (530)
Q Consensus 175 ~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~----~~L~ 246 (530)
.+- |.+..|..-|....+.-|+-.|+.....++. .+..|+.+-+.|.|+.+.+.+... ++--.--+. ..++
T Consensus 208 eckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg 286 (524)
T KOG4413|consen 208 ECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG 286 (524)
T ss_pred HhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence 776 6788888888776777888999999999886 567899999999999999998743 221111122 2333
Q ss_pred HhhcCC-CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCc--hHHHHHHHhcCCCcc
Q 009647 247 NLIKGP-DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV--LQLLVERLATSNSLQ 323 (530)
Q Consensus 247 nL~~~~-~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~--l~~Lv~lL~~~~~~~ 323 (530)
+..-.+ .++...+. -.-++...+.++...|++.+..|.-+++.+-. +.+..+.+.++|- ...++....+.+...
T Consensus 287 keaimdvseeaicea--liiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlllkTgppaaehllarafdqnaha 363 (524)
T KOG4413|consen 287 KEAIMDVSEEAICEA--LIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLLKTGPPAAEHLLARAFDQNAHA 363 (524)
T ss_pred chHHhhcCHHHHHHH--HHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHhccCChHHHHHHHHHhcccccc
Confidence 333222 11111010 01233344566778899999999999999986 4456677777663 334433332223333
Q ss_pred chhhhHHHHhhhhcCCccccchhcc-------------cC-CCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH
Q 009647 324 LLIPVLRSLGNLVAGDSSTISDVLV-------------PG-HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE 389 (530)
Q Consensus 324 v~~~al~~L~nl~~~~~~~~~~~i~-------------~g-~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~ 389 (530)
-+..++++|.+|+.........+.+ +- ......-+..+..+++.+.+.++-.+..++..|++..=.
T Consensus 364 kqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWa 443 (524)
T KOG4413|consen 364 KQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWA 443 (524)
T ss_pred hHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHH
Confidence 4568899999988543211111111 00 001123455567788888899999999999999876533
Q ss_pred HHHHHHhCCcHHHHHHH
Q 009647 390 HKQLIHSSEALALLLHL 406 (530)
Q Consensus 390 ~~~~li~~~~l~~Li~l 406 (530)
+...+-..+++..+.+.
T Consensus 444 lkeifakeefieiVtDa 460 (524)
T KOG4413|consen 444 LKEIFAKEEFIEIVTDA 460 (524)
T ss_pred HHHHhcCccceeeeccc
Confidence 33333344665555443
No 99
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0012 Score=61.48 Aligned_cols=245 Identities=22% Similarity=0.260 Sum_probs=149.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHH
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLI 184 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~ 184 (530)
+.....++.|+-.||.++.... +..+.+....+ ...+..+.+++|+.....+ ++|.|+
T Consensus 16 s~~l~~r~rALf~Lr~l~~~~~------------i~~i~ka~~d~-s~llkhe~ay~LgQ~~~~~---------Av~~l~ 73 (289)
T KOG0567|consen 16 SQPLQNRFRALFNLRNLLGPAA------------IKAITKAFIDD-SALLKHELAYVLGQMQDED---------AVPVLV 73 (289)
T ss_pred cHHHHHHHHHHHhhhccCChHH------------HHHHHHhcccc-hhhhccchhhhhhhhccch---------hhHHHH
Confidence 4455667888888888754321 34444444433 2344457888887766432 688888
Q ss_pred HhhcC-CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC-----------
Q 009647 185 AHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP----------- 252 (530)
Q Consensus 185 ~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~----------- 252 (530)
..|.. +..+-||..|..+||++. +. ..++.+-+..+++...+.+.+-.++..+-...
T Consensus 74 ~vl~desq~pmvRhEAaealga~~-~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~ 142 (289)
T KOG0567|consen 74 EVLLDESQEPMVRHEAAEALGAIG-DP----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPY 142 (289)
T ss_pred HHhcccccchHHHHHHHHHHHhhc-ch----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcc
Confidence 87765 245778889999999876 22 34566666666677777777777776654321
Q ss_pred ---CCCchhhHHHhhchHHHHHHHhccCCHH-H-HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhh
Q 009647 253 ---DPKPATELIKVDGLLDAILRHLKRADEE-L-TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP 327 (530)
Q Consensus 253 ---~~~~~~~~v~~~~~l~~L~~lL~~~d~~-v-~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~ 327 (530)
+|.+. . ...-+.-+-..|.+.... . +..+.+.|.|+- .++.+..++ +-| ..++.-.+..
T Consensus 143 ~SvdPa~p--~--~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~EeaI~al~---------~~l-~~~SalfrhE 206 (289)
T KOG0567|consen 143 ISVDPAPP--A--NLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEAINALI---------DGL-ADDSALFRHE 206 (289)
T ss_pred ccCCCCCc--c--ccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHHHHHHH---------Hhc-ccchHHHHHH
Confidence 11111 0 112233333333333322 2 223444444442 344444333 334 2345556678
Q ss_pred hHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHH
Q 009647 328 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLH 405 (530)
Q Consensus 328 al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~ 405 (530)
+..++|.+-+. -.+|.|...|.. .++.+|.+|+.+|+.|+. ++ .++.|..
T Consensus 207 vAfVfGQl~s~-----------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e 258 (289)
T KOG0567|consen 207 VAFVFGQLQSP-----------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKE 258 (289)
T ss_pred HHHHHhhccch-----------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHH
Confidence 88888876422 378888888854 578999999999999954 22 4667778
Q ss_pred HhcCCChhHHHHHHHHHHHhc
Q 009647 406 LLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 406 lL~~~~~~v~~eA~~aL~nl~ 426 (530)
.+.+.++-|++.+..+|.-+-
T Consensus 259 ~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHHH
Confidence 888888888888888886553
No 100
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.84 E-value=0.00056 Score=57.08 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=118.3
Q ss_pred hhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 009647 356 QVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG 434 (530)
Q Consensus 356 ~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~ 434 (530)
+.+..|+.-+. ..+.+.+.....-|.|++. +|.+-..+.+.+++...+.-|...+..+...++..|||+|...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~----- 89 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK----- 89 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-----
Confidence 45666666554 3466778888888888865 5677788889999999999999999999999999999999752
Q ss_pred CchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHH
Q 009647 435 KPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 514 (530)
Q Consensus 435 ~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A 514 (530)
....++.+.+.++.++..+.++...++..++.++..+..... ..+..+-.-..++.++....+...+.+..|
T Consensus 90 ------~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R--t~r~ell~p~Vv~~v~r~~~s~s~~~rnLa 161 (173)
T KOG4646|consen 90 ------TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER--TERDELLSPAVVRTVQRWRESKSHDERNLA 161 (173)
T ss_pred ------HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc--chhHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence 457889999999999999999888888888888877643221 123344445566777777767777788888
Q ss_pred HHHHHhhcC
Q 009647 515 NGLVDKYFG 523 (530)
Q Consensus 515 ~~il~~~f~ 523 (530)
...++++..
T Consensus 162 ~~fl~~~~~ 170 (173)
T KOG4646|consen 162 SAFLDKHVH 170 (173)
T ss_pred HHHHHhhcc
Confidence 888887753
No 101
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.83 E-value=0.0019 Score=65.39 Aligned_cols=309 Identities=16% Similarity=0.142 Sum_probs=182.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHH-HHHHHHHHHhcCChhhHHhh-cCCcHH
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKAL-LPALPL 182 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~-eA~~~L~nia~~~~~~~~~i-~~~v~~ 182 (530)
+++.+.+..|.+.+|.++... ..+..+.+.++=-.++..|..++..+.-+ +|...+..+..-.. ..+.+ .+.+..
T Consensus 36 ~~~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~~~~~vvra 112 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKEIPRGVVRA 112 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-CcccCCHHHHHH
Confidence 555889999999999998654 34566778887777888888665443333 47777766663311 11111 256778
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647 183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 262 (530)
Q Consensus 183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~ 262 (530)
++.+..+ ++...+..|+.+|.-++.-+| +.+..+|++..|++.+.++..++.+.+++++..+...+ . .+..+.
T Consensus 113 lvaiae~-~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p--~-tR~yl~ 185 (371)
T PF14664_consen 113 LVAIAEH-EDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP--R-TRKYLR 185 (371)
T ss_pred HHHHHhC-CchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc--c-hhhhhc
Confidence 8888877 678899999999999998554 56889999999999888766668999999999998653 2 233333
Q ss_pred hhchHHHHHHHhccC-------CH--HHHHHHHHHHHHhhcCCchhHHHHH-h-cCchHHHHHHHhcCCCccchhhhHHH
Q 009647 263 VDGLLDAILRHLKRA-------DE--ELTTEVAWVVVYLSALSNVATSLLV-K-SGVLQLLVERLATSNSLQLLIPVLRS 331 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~-------d~--~v~~~a~~~L~~L~~~~~~~~~~i~-~-~g~l~~Lv~lL~~~~~~~v~~~al~~ 331 (530)
..--+..++.-+.+. +. +-...+..++..+-..=+ ..-.+. + ...+..|+..| ..++++++...+..
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~-GLl~l~~~~~~~lksLv~~L-~~p~~~ir~~Ildl 263 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP-GLLYLSMNDFRGLKSLVDSL-RLPNPEIRKAILDL 263 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC-ceeeeecCCchHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 222344444333322 22 345566666666654211 111111 1 14677788888 57887888888888
Q ss_pred HhhhhcCCccc-cchhcccCCC-cchhhHHHHHHHhc--cCcHhHHHHHHHHHHHHhcCCH-HHHHHHHhCCcHHHHHHH
Q 009647 332 LGNLVAGDSST-ISDVLVPGHG-ITDQVIAVLVKCLK--SEHRVLKKEAAWVLSNIAAGSV-EHKQLIHSSEALALLLHL 406 (530)
Q Consensus 332 L~nl~~~~~~~-~~~~i~~g~~-~~~~~l~~L~~lL~--~~~~~i~~~A~~~Lsnl~~~~~-~~~~~li~~~~l~~Li~l 406 (530)
+..+..-.... ..... .|.. ...+-..--.++-. .+.......-..--.|+..+.. -....++++|+++.|+++
T Consensus 264 l~dllrik~p~w~~~~~-~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l 342 (371)
T PF14664_consen 264 LFDLLRIKPPSWTESFL-AGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL 342 (371)
T ss_pred HHHHHCCCCCCcccchh-hcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 87776443221 11111 0000 00111100000000 0000000000000112222111 123456799999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHhc
Q 009647 407 LSTS-PFDIKKEVAYVLGNLC 426 (530)
Q Consensus 407 L~~~-~~~v~~eA~~aL~nl~ 426 (530)
..+. +..+...|...|+.+.
T Consensus 343 i~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 343 IESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HhcCCCchHHHHHHHHHHHHH
Confidence 9776 7889999999988774
No 102
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.82 E-value=0.017 Score=62.87 Aligned_cols=344 Identities=16% Similarity=0.171 Sum_probs=193.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 172 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~ 172 (530)
+.++..++. ..|...-..|+..+.-++.. .|..-.-+..-+++.++.+++++ -+|-.|..++.++-
T Consensus 695 L~el~~Lis---esdlhvt~~a~~~L~tl~~~--~ps~l~~~~~~iL~~ii~ll~Sp---llqg~al~~~l~~f------ 760 (1233)
T KOG1824|consen 695 LVELPPLIS---ESDLHVTQLAVAFLTTLAII--QPSSLLKISNPILDEIIRLLRSP---LLQGGALSALLLFF------ 760 (1233)
T ss_pred HHHhhhhhh---HHHHHHHHHHHHHHHHHHhc--ccHHHHHHhhhhHHHHHHHhhCc---cccchHHHHHHHHH------
Confidence 455555553 34444445555555555432 23333334566889999999864 34444444443332
Q ss_pred HHhhc----C--CcHHHHHhhcCCC----CHHHHHHHHHHHHhhcC----CCchhHHHHHhcCChhhhHhhcCC--CChh
Q 009647 173 TKALL----P--ALPLLIAHLGEKS----SSPVAEQCAWALGNVAG----EGEEFRNVLLSQGALPPLARMMLP--NKGS 236 (530)
Q Consensus 173 ~~~i~----~--~v~~L~~lL~~~~----~~~v~~~a~~~L~nla~----d~~~~r~~~~~~g~i~~L~~lL~~--~~~~ 236 (530)
++++ + ....++.++..+- ...+-.+|.+.++.++. -.++- .......|+.-+.+ .+..
T Consensus 761 -~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ 834 (1233)
T KOG1824|consen 761 -QALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK-----SKSLATKLIQDLQSPKSSDS 834 (1233)
T ss_pred -HHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHHhCCCCchh
Confidence 1111 1 1445666665521 11244555554444332 11100 11123334433333 3567
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC-chhHHHHHhc---C-----
Q 009647 237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS-NVATSLLVKS---G----- 307 (530)
Q Consensus 237 ~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~i~~~---g----- 307 (530)
++--|+.+|+.+-++....+. .+.-..++.-++++.+++...|..||+.++.|+ +.+...+.+. .
T Consensus 835 ikvfa~LslGElgr~~~~s~~------~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~Qy 908 (1233)
T KOG1824|consen 835 IKVFALLSLGELGRRKDLSPQ------NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQY 908 (1233)
T ss_pred HHHHHHhhhhhhccCCCCCcc------hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHH
Confidence 788888999999988765543 344457788999999999999999999999864 3333332211 0
Q ss_pred -chHHHHHHH-------------------hcC---CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHH
Q 009647 308 -VLQLLVERL-------------------ATS---NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC 364 (530)
Q Consensus 308 -~l~~Lv~lL-------------------~~~---~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~l 364 (530)
.+..|.+.+ ..+ ...-.+.-...|||.++..++ ...+|.|-..
T Consensus 909 LLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--------------esLlpkL~~~ 974 (1233)
T KOG1824|consen 909 LLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--------------ESLLPKLKLL 974 (1233)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--------------HHHHHHHHHH
Confidence 112222222 111 112223444555555554433 3588999999
Q ss_pred hccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 009647 365 LKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV 444 (530)
Q Consensus 365 L~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~ 444 (530)
+.++.+..|..+..++--.....++-+..+... .+...+.+++++|.+|++.|.-++...+.+ .|..|.+-..
T Consensus 975 ~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~-~ig~fl~~~~dpDl~VrrvaLvv~nSaahN------KpslIrDllp 1047 (1233)
T KOG1824|consen 975 LRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQ-QIGDFLKLLRDPDLEVRRVALVVLNSAAHN------KPSLIRDLLP 1047 (1233)
T ss_pred hcCCCcchhhhhhheeeeeecCCCCccCHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHcc------CHhHHHHHHH
Confidence 999998888887777765555555555555443 466788899999999999999999888764 3433322221
Q ss_pred ----HHHhc-CChHHHHhhhcc--------CCHHHHHHHHHHHHHHHccCCC
Q 009647 445 ----SLVGR-GCLSGFIDLVRS--------ADIEAARLGLQFMELVLRGMPN 483 (530)
Q Consensus 445 ----~l~~~-g~i~~L~~lL~~--------~d~~i~~~~L~~L~~il~~~~~ 483 (530)
.+.+. .+=..++.-.+. +.-++++.+.++++.++..+.+
T Consensus 1048 eLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld 1099 (1233)
T KOG1824|consen 1048 ELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLD 1099 (1233)
T ss_pred HHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhh
Confidence 11111 122223333222 1235677888888888876643
No 103
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.81 E-value=0.00059 Score=75.34 Aligned_cols=299 Identities=16% Similarity=0.083 Sum_probs=184.9
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcC---CCchh
Q 009647 138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAG---EGEEF 213 (530)
Q Consensus 138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~---d~~~~ 213 (530)
+++.+..+++.-.....+.+|+..|..++.-..+ +..+ -.+|.++.++.+ +..+||-.|+.+|..+-. +-+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4677777777544456678899988888853321 1122 389999999998 789999999998887764 33344
Q ss_pred HHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009647 214 RNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL 292 (530)
Q Consensus 214 r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L 292 (530)
-..++..-++|-|-.++.+ ....++-.-+.+|+.|+.. ..+ +. +...-.....+++.++.+.. -
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t----A~r-Fl-e~~q~~~~~g~~n~~nset~---------~ 564 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT----AYR-FL-ELTQELRQAGMLNDPNSETA---------P 564 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH----HHH-HH-HHHHHHHhcccccCcccccc---------c
Confidence 4456666678888888887 4566677777788888742 111 11 11112222233444443300 0
Q ss_pred hcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhH
Q 009647 293 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL 372 (530)
Q Consensus 293 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i 372 (530)
-...+...+.+.. ++-...+.+| ..+++-|+...+..|+-++..-..... +.-+++.|+.+|++.++.+
T Consensus 565 ~~~~~~~~~~L~~-~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FFGk~ks---------ND~iLshLiTfLNDkDw~L 633 (1431)
T KOG1240|consen 565 EQNYNTELQALHH-TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFFGKEKS---------NDVILSHLITFLNDKDWRL 633 (1431)
T ss_pred ccccchHHHHHHH-HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhhhccc---------ccchHHHHHHHhcCccHHH
Confidence 0011222233322 2333344455 344455666667777777643211110 1237899999999999988
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH-HhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC
Q 009647 373 KKEAAWVLSNIAAGSVEHKQLI-HSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 451 (530)
Q Consensus 373 ~~~A~~~Lsnl~~~~~~~~~~l-i~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~ 451 (530)
|-.=.-.|.-++.. +..- ++..++|.|.+-|.++++-|...|+.+|.-++... .+++..-..+
T Consensus 634 R~aFfdsI~gvsi~----VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~------------ll~K~~v~~i 697 (1431)
T KOG1240|consen 634 RGAFFDSIVGVSIF----VGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG------------LLRKPAVKDI 697 (1431)
T ss_pred HHHHHhhccceEEE----EeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc------------ccchHHHHHH
Confidence 87655566544331 1111 34458899999999999999999999999998631 2333333344
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647 452 LSGFIDLVRSADIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~ 481 (530)
++-..-+|..++.-+...++.+|..+.+..
T Consensus 698 ~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 698 LQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 455555677788888888888888876543
No 104
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.81 E-value=0.002 Score=69.62 Aligned_cols=349 Identities=12% Similarity=0.112 Sum_probs=200.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc
Q 009647 98 SAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL 177 (530)
Q Consensus 98 ~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~ 177 (530)
.+++.+.+.|-+-++-|+.-|-.-|.... ...+.--+..++..++++|...+ .++|-.|..|++-+++.-.+. .+.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~--~le 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKED--QLE 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHH--HHH
Confidence 45666679999999999998877665431 11111123457788888888655 788899999999999654322 222
Q ss_pred CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhh----hHhhcCC--CChhHHHHHHHHH----HH
Q 009647 178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP----LARMMLP--NKGSTVRTAAWAL----SN 247 (530)
Q Consensus 178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~----L~~lL~~--~~~~~~~~a~~~L----~n 247 (530)
..+..|..-+-+ ...+.+..+.-.|.-....-+..........+.+. +...+.. +...++..++-.+ ++
T Consensus 85 ~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 85 TIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 344555544333 34455554443332222222222222233333333 3333322 2233444444333 33
Q ss_pred hhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhh
Q 009647 248 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP 327 (530)
Q Consensus 248 L~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~ 327 (530)
+..- -+ ++ ..+++..++.-+.++-.-++..++.+|+.++...+.. + -.+++..|++-|.....+.....
T Consensus 164 ~g~l---l~--~f--h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---l-y~~li~~Ll~~L~~~~q~~~~rt 232 (1233)
T KOG1824|consen 164 FGTL---LP--NF--HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---L-YVELIEHLLKGLSNRTQMSATRT 232 (1233)
T ss_pred hccc---Cc--ch--HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHhccCCCCchHHHHH
Confidence 3321 11 11 3466666666677777889999999999999632211 1 12345556665643334444445
Q ss_pred hHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh---ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH
Q 009647 328 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL---KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL 404 (530)
Q Consensus 328 al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL---~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li 404 (530)
-+.+|+.++.........-+ ..++|.+.+.. ...+.++|+..+.++.-+....+..+-..+.. ++..++
T Consensus 233 ~Iq~l~~i~r~ag~r~~~h~-------~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l 304 (1233)
T KOG1824|consen 233 YIQCLAAICRQAGHRFGSHL-------DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPE-IINLCL 304 (1233)
T ss_pred HHHHHHHHHHHhcchhhccc-------chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHH
Confidence 66777777755443333333 35788888888 56677899999999988877665544332221 222333
Q ss_pred HHhcC----------------------------------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC
Q 009647 405 HLLST----------------------------------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 450 (530)
Q Consensus 405 ~lL~~----------------------------------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g 450 (530)
+.+.. -+.+||++|+.++..+...- .+.+..+ -+.
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR----------~E~L~~~-~q~ 373 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR----------LEMLPDF-YQT 373 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc----------HHHHHHH-HHH
Confidence 33211 01358999999998876521 2333222 234
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~ 481 (530)
+=|.++.-++..+..+...+..+...++...
T Consensus 374 l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt 404 (1233)
T KOG1824|consen 374 LGPALISRFKEREENVKADVFHAYIALLKQT 404 (1233)
T ss_pred hCHHHHHHHHHHhhhHHHHHHHHHHHHHHcC
Confidence 5577888888777778777777777777643
No 105
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.78 E-value=4.4e-05 Score=54.58 Aligned_cols=53 Identities=38% Similarity=0.581 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhh
Q 009647 153 EQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNV 206 (530)
Q Consensus 153 ~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nl 206 (530)
.++..|+|+|++++....+.....+ .++|.|+.+|.+ +++.||..|+|+||+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 4566799999999988877777766 699999999987 6789999999999986
No 106
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0025 Score=67.84 Aligned_cols=299 Identities=18% Similarity=0.157 Sum_probs=200.3
Q ss_pred cCCHHHHHHHhcCCCChHHHHHH-HHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEA-AWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA-~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 214 (530)
.|.++.+-.-|.+.. +.-+.+| -.++..+..|.. +-...|-+++.+.. .+.+++.-+---+.|.+...|..
T Consensus 12 k~ei~elks~l~s~~-~~kr~~a~kkvIa~Mt~G~D-----vSslF~dvvk~~~T-~dlelKKlvyLYl~nYa~~~P~~- 83 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQS-KEKRKDAVKKVIAYMTVGKD-----VSSLFPDVVKCMQT-RDLELKKLVYLYLMNYAKGKPDL- 83 (734)
T ss_pred hhhchHHHHHhhhhh-hhhHHHHHHHHHhcCccCcc-----hHhhhHHHHhhccc-CCchHHHHHHHHHHHhhccCchH-
Confidence 344555555553322 2334443 346666665521 12356778888876 67889999999999999865542
Q ss_pred HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
..++++.+++=..++++.++.-|..+++.+--. + + ...+...|.+.+++.++.++..+.-+...+-.
T Consensus 84 ----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~---~----i--~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~ 150 (734)
T KOG1061|consen 84 ----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVD---K----I--TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD 150 (734)
T ss_pred ----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh---H----H--HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc
Confidence 335667777777788888888887776655321 1 2 24667889999999999999999998888876
Q ss_pred CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647 295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 374 (530)
Q Consensus 295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~ 374 (530)
.+ .+...+.|.+..|..++. +.++.|..+|+.+|..|...+....-..+ ....+..++..+......-+.
T Consensus 151 ~~---~~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~~~~l------~~~~~~~lL~al~ec~EW~qi 220 (734)
T KOG1061|consen 151 ID---PDLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHPSVNLLEL------NPQLINKLLEALNECTEWGQI 220 (734)
T ss_pred CC---hhhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCCcccc------cHHHHHHHHHHHHHhhhhhHH
Confidence 43 345678899999999994 78889999999999999977654221112 233455555555544444455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHH
Q 009647 375 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG 454 (530)
Q Consensus 375 ~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~ 454 (530)
...-++.+-...++...+. ++..+...|++.+..+.-.|..++.++... ..++....-..+-++
T Consensus 221 ~IL~~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~~~~~-----------~~~~~~~~~~K~~~p 284 (734)
T KOG1061|consen 221 FILDCLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQLVKY-----------LKQVNELLFKKVAPP 284 (734)
T ss_pred HHHHHHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHHHHHH-----------HHHHHHHHHHHhccc
Confidence 5555555444433322332 455677778888888888888888887642 133445566678889
Q ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647 455 FIDLVRSADIEAARLGLQFMELVLRGMP 482 (530)
Q Consensus 455 L~~lL~~~d~~i~~~~L~~L~~il~~~~ 482 (530)
|+.++.+.. ++..++|.=+.-|+...+
T Consensus 285 l~tlls~~~-e~qyvaLrNi~lil~~~p 311 (734)
T KOG1061|consen 285 LVTLLSSES-EIQYVALRNINLILQKRP 311 (734)
T ss_pred ceeeecccc-hhhHHHHhhHHHHHHhCh
Confidence 999888766 888888887777776554
No 107
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.76 E-value=7.4e-05 Score=59.14 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=69.2
Q ss_pred hhhhHhhc-CCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHH
Q 009647 223 LPPLARMM-LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301 (530)
Q Consensus 223 i~~L~~lL-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~ 301 (530)
||.|++.| +++++.++..++++|+++. ...++|.|..++.++++.++..++++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 57899988 7889999999999998432 23668999999999999999999999998842
Q ss_pred HHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333 (530)
Q Consensus 302 ~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~ 333 (530)
..+++.|.+++.++++..++..|..+||
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3467888888864445556788888876
No 108
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.71 E-value=0.00078 Score=63.85 Aligned_cols=189 Identities=17% Similarity=0.129 Sum_probs=116.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHH--cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CC
Q 009647 104 GKGAMQKRVNALRELRRLLSRF-EFPPIETALK--AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PA 179 (530)
Q Consensus 104 ~s~d~~~~~~a~~~lr~lls~~-~~~~~~~ii~--~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~ 179 (530)
.+.|=+.+.+|+..|++++..+ .......+++ ..+++.++..+.+.. ..+...|+.++..++..-.......+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4678899999999999998766 1122223322 255566666666433 34567899999999865444444444 48
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC-CCchh
Q 009647 180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD-PKPAT 258 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~-~~~~~ 258 (530)
+|.|++.+.+ +..-+++.|..+|..++...+.....+ ++.+...+++.++.++..++-.+..+..... +....
T Consensus 96 l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 9999999988 678899999999999998543111111 4556667778899999999988888876532 11111
Q ss_pred h-HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh
Q 009647 259 E-LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA 299 (530)
Q Consensus 259 ~-~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~ 299 (530)
. ......+++.+.+++.+.+++++..+-.++..+....++.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 1 1112467888999999999999999888888776543333
No 109
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0019 Score=67.37 Aligned_cols=191 Identities=15% Similarity=0.164 Sum_probs=126.6
Q ss_pred hhhhHhhcCCCChhHHHHH---HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh
Q 009647 223 LPPLARMMLPNKGSTVRTA---AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA 299 (530)
Q Consensus 223 i~~L~~lL~~~~~~~~~~a---~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~ 299 (530)
....++++.+.+..++..| +|.++|.+-...+....+.-....++..++..+.+-.-.|+..|+.+|+.+..-+++.
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~ 315 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI 315 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH
Confidence 3446677777778888766 5777777733222222222123467788888888888889999999999888767776
Q ss_pred HHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC-----------CccccchhcccCCCcchhhHHHHHHHhccC
Q 009647 300 TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG-----------DSSTISDVLVPGHGITDQVIAVLVKCLKSE 368 (530)
Q Consensus 300 ~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~-----------~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~ 368 (530)
+...++..++..+-+.=..+. +-.++..=|.-++| .+.+...++. +|+-..++.-|.++
T Consensus 316 i~QTLdKKlms~lRRkr~ahk----rpk~l~s~GewSsGk~~~advpsee~d~~~~siI~------sGACGA~VhGlEDE 385 (823)
T KOG2259|consen 316 IQQTLDKKLMSRLRRKRTAHK----RPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIP------SGACGALVHGLEDE 385 (823)
T ss_pred HHHHHHHHHhhhhhhhhhccc----chHHHHhcCCcccCccccccCchhhcccccccccc------ccccceeeeechHH
Confidence 666666555543332111111 11122222222222 2233344554 46888888888888
Q ss_pred cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
-.+||+.|...+..++..++..... .+..|++++.+...+||..|..+|..++.+
T Consensus 386 f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 386 FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999877665443 467899999999999999999999998764
No 110
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.69 E-value=0.0001 Score=48.93 Aligned_cols=38 Identities=34% Similarity=0.495 Sum_probs=35.2
Q ss_pred HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 389 ~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
++...+++.|++++|+.++.+++.++++.|+|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46778889999999999999999999999999999996
No 111
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.69 E-value=0.00096 Score=73.78 Aligned_cols=269 Identities=19% Similarity=0.168 Sum_probs=165.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh--
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-- 170 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~-- 170 (530)
+.-+.+.++.+. ..+.++.|+..|+.+ +..-. ++..=.-++|.+|.++.... ..++..|..+|+.+...-.
T Consensus 424 vs~lts~IR~lk--~~~tK~~ALeLl~~l-S~~i~---de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 424 VSVLTSCIRALK--TIQTKLAALELLQEL-STYID---DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDI 496 (1431)
T ss_pred HHHHHHHHHhhh--cchhHHHHHHHHHHH-hhhcc---hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCC
Confidence 344455555443 356788899888887 43322 22333568999999998644 5677788888888764211
Q ss_pred hhHH-hhc-C-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchh---HHHHHhcCCh---------------------
Q 009647 171 EETK-ALL-P-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF---RNVLLSQGAL--------------------- 223 (530)
Q Consensus 171 ~~~~-~i~-~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~---r~~~~~~g~i--------------------- 223 (530)
...+ .++ + .+|.|-.++.++....++-.-+.+|+.+|.---.+ -..+...|..
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH 576 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence 1112 222 3 78888888877444455555555666655311111 1111111111
Q ss_pred ----hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh
Q 009647 224 ----PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA 299 (530)
Q Consensus 224 ----~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~ 299 (530)
.....++.++++-+++..+-.+.-||..-.-... ..-+++.|...|++.|..++..-.-.+.+++-.
T Consensus 577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~---- 647 (1431)
T KOG1240|consen 577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF---- 647 (1431)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCccHHHHHHHHhhccceEEE----
Confidence 1222344444455555555555555542110100 234577788888888887777777766666531
Q ss_pred HHHH-HhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHH
Q 009647 300 TSLL-VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW 378 (530)
Q Consensus 300 ~~~i-~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~ 378 (530)
+... ++..++|.|.+-| ....+.|...||++|.-++...--....++ .+++....+|-|++.-||..+|.
T Consensus 648 VG~rs~seyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--------~i~~~v~PlL~hPN~WIR~~~~~ 718 (1431)
T KOG1240|consen 648 VGWRSVSEYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLGLLRKPAVK--------DILQDVLPLLCHPNLWIRRAVLG 718 (1431)
T ss_pred EeeeeHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcccchHHHH--------HHHHhhhhheeCchHHHHHHHHH
Confidence 1111 3456778888878 467788999999999999977655666666 48888889999999999999999
Q ss_pred HHHHHhcC
Q 009647 379 VLSNIAAG 386 (530)
Q Consensus 379 ~Lsnl~~~ 386 (530)
.|..++..
T Consensus 719 iI~~~~~~ 726 (1431)
T KOG1240|consen 719 IIAAIARQ 726 (1431)
T ss_pred HHHHHHhh
Confidence 99887653
No 112
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.67 E-value=0.00033 Score=66.46 Aligned_cols=183 Identities=15% Similarity=0.190 Sum_probs=113.0
Q ss_pred cCCCccchhhhHHHHhhhhcCC--ccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009647 318 TSNSLQLLIPVLRSLGNLVAGD--SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIH 395 (530)
Q Consensus 318 ~~~~~~v~~~al~~L~nl~~~~--~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li 395 (530)
.+.+.+.+..++..|..++.+. ......+.+. -..++..+...+.+.+..+.+.||.++..++..........+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~----l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVEC----LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHH----HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHH----HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 4567777888999999988776 2222222210 012345666677777778999999999999876444455444
Q ss_pred hCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHH
Q 009647 396 SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME 475 (530)
Q Consensus 396 ~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~ 475 (530)
+ .++|.|+..+.++..-++..|..+|..++.... .. ..+ .++.+...+.++++.+...++..+.
T Consensus 93 ~-~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~--------~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~ 156 (228)
T PF12348_consen 93 D-ILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YS--------PKI----LLEILSQGLKSKNPQVREECAEWLA 156 (228)
T ss_dssp H-HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H----------HH----HHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cH--------HHH----HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4 378999999999988999999999999987531 00 011 1455677788899999999999999
Q ss_pred HHHccCCCCcchhHHHH----hchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647 476 LVLRGMPNHEGTKLVER----EDGIDAMERFQFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 476 ~il~~~~~~~~~~~i~~----~ggl~~L~~L~~~~~~~i~~~A~~il~~~f 522 (530)
.++...+.. ...+.. ....+.|..+..+.+++|++.|...+..|+
T Consensus 157 ~~l~~~~~~--~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 157 IILEKWGSD--SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHTT-------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHccch--HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 999766511 111122 224456777889999999999987777664
No 113
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.65 E-value=0.003 Score=60.34 Aligned_cols=231 Identities=15% Similarity=0.080 Sum_probs=148.6
Q ss_pred CHHHHHHHHHHHHhhcCCCchhHHHHHhcC-ChhhhHhhcCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchH
Q 009647 192 SSPVAEQCAWALGNVAGEGEEFRNVLLSQG-ALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLL 267 (530)
Q Consensus 192 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g-~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~v~-~~~~l 267 (530)
++-.+.-|+.++.++..+ ++.|+.+-..+ .-..++.++++. ...++-+...+++.|+..+ ... +.|. ....+
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~--~~a-qdi~K~~dli 237 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK--ECA-QDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH--HHH-HHHHHHHHHH
Confidence 344677899999999984 67887766554 334466666653 5788889998888888652 222 2221 22445
Q ss_pred HHHHHHhccC-CHHHHHHHHHHHHHhhc-CCchhHHHHHhcCchHHHHHHHhc--CCCccchhhhHHHHhhhhcCCcccc
Q 009647 268 DAILRHLKRA-DEELTTEVAWVVVYLSA-LSNVATSLLVKSGVLQLLVERLAT--SNSLQLLIPVLRSLGNLVAGDSSTI 343 (530)
Q Consensus 268 ~~L~~lL~~~-d~~v~~~a~~~L~~L~~-~~~~~~~~i~~~g~l~~Lv~lL~~--~~~~~v~~~al~~L~nl~~~~~~~~ 343 (530)
.-++++.... .+.|..-+|..+.++++ .+...+..+.-.|-+.+.++.|.. ..++++....-+.=..+........
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 5566666543 45688889999999998 334555555555655556666642 2344433322111111111110000
Q ss_pred -----chhcccCCC---------------------cchhhHHHHHHHhccCcHh-HHHHHHHHHHHHhcCCHHHHHHHHh
Q 009647 344 -----SDVLVPGHG---------------------ITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNIAAGSVEHKQLIHS 396 (530)
Q Consensus 344 -----~~~i~~g~~---------------------~~~~~l~~L~~lL~~~~~~-i~~~A~~~Lsnl~~~~~~~~~~li~ 396 (530)
-.-+++|.. =+..++..|..++++..+. ...-||.-|..+....|+....+..
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K 397 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK 397 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence 000111100 0345788899999887765 5667888899998889999988999
Q ss_pred CCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 397 SEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 397 ~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
.|+=..+++++.+++++|+.+|..|+-.+.
T Consensus 398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 398 YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999986654
No 114
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.084 Score=55.90 Aligned_cols=268 Identities=13% Similarity=0.081 Sum_probs=154.4
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcC------------CCCHHHHHHHHHH
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGE------------KSSSPVAEQCAWA 202 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~------------~~~~~v~~~a~~~ 202 (530)
.+...+++.+|..++ -.+...|...+.-++...++.-...+ .++..|...... -+.|-++..++.+
T Consensus 186 ~~W~~riv~LL~D~~-~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl 264 (938)
T KOG1077|consen 186 GEWAQRIVHLLDDQH-MGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL 264 (938)
T ss_pred hhHHHHHHHHhCccc-cceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH
Confidence 345677778877544 22334455666666665554433333 244444333221 1456777777888
Q ss_pred HHhhcC-CCchhHHHHHhcCChhhhHhhcCCC-------ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh
Q 009647 203 LGNVAG-EGEEFRNVLLSQGALPPLARMMLPN-------KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL 274 (530)
Q Consensus 203 L~nla~-d~~~~r~~~~~~g~i~~L~~lL~~~-------~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL 274 (530)
|.+.-. +++..|..+.+ ++..++...+.+ .....-+.++-.-+|+.+-++. .+.+ ..++..|.++|
T Consensus 265 Lq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e--~~ll--~~~~~~Lg~fl 338 (938)
T KOG1077|consen 265 LQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSE--PELL--SRAVNQLGQFL 338 (938)
T ss_pred HHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCc--HHHH--HHHHHHHHHHh
Confidence 877643 22233433332 234444444321 1222333444455666554433 3343 47788888889
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcc
Q 009647 275 KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGIT 354 (530)
Q Consensus 275 ~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~ 354 (530)
.+....++.-++..+++|+.. ...++.+-.+ ...++..|....|.+++..|+..|-.+|.....
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na------------- 402 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA------------- 402 (938)
T ss_pred hcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH-------------
Confidence 888888998899999999873 4445555443 566777785578999999999999998855432
Q ss_pred hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCH-------HHHHHH-------HhCCcHHHHHHHhcCCChhHHHHHHH
Q 009647 355 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV-------EHKQLI-------HSSEALALLLHLLSTSPFDIKKEVAY 420 (530)
Q Consensus 355 ~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~-------~~~~~l-------i~~~~l~~Li~lL~~~~~~v~~eA~~ 420 (530)
..++.-|++.|.+-++.+|++..-=+.=|+.... ..+-.+ ++.++.-.++++..+. ++++..|+.
T Consensus 403 k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNn-edlq~yaak 481 (938)
T KOG1077|consen 403 KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNN-EDLQGYAAK 481 (938)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecc-hhhhHHHHH
Confidence 1366677888888888888887665555543210 111111 1223445555554433 467777777
Q ss_pred HHHHhcC
Q 009647 421 VLGNLCV 427 (530)
Q Consensus 421 aL~nl~~ 427 (530)
.+.....
T Consensus 482 ~~fe~Lq 488 (938)
T KOG1077|consen 482 RLFEYLQ 488 (938)
T ss_pred HHHHHHh
Confidence 6655543
No 115
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.61 E-value=0.00011 Score=48.69 Aligned_cols=39 Identities=36% Similarity=0.653 Sum_probs=36.1
Q ss_pred hhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647 212 EFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 250 (530)
Q Consensus 212 ~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 250 (530)
+.+..+.+.|++++|+.++.+++.++++.++|+|+||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 478889999999999999999899999999999999973
No 116
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.61 E-value=0.001 Score=68.62 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=126.8
Q ss_pred hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc-hhHHH
Q 009647 224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-VATSL 302 (530)
Q Consensus 224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~ 302 (530)
..++.+|+++.+.++..|+-..+.|+.-- +.+-+.-.....=..|..-|...+++++-..+.+++.+..... ...+-
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~vl--k~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqp 684 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKVL--KACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQP 684 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHH--HhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCC
Confidence 33445556666666666666666554210 0010100001111224455566788888887777777764211 00111
Q ss_pred HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN 382 (530)
Q Consensus 303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn 382 (530)
- -.|++|.|...| ++...++..+.+..+|.|+...++.+..- + +..+---|+.+|.+.+.++|+.|..+++.
T Consensus 685 P-i~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~r-E-----WMRIcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 685 P-ISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVR-E-----WMRICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred c-hhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHH-H-----HHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 1 258999999999 57888899999999999998776643221 1 23455567888888899999999999999
Q ss_pred HhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc
Q 009647 383 IAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS 461 (530)
Q Consensus 383 l~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~ 461 (530)
|+.. .++ .++..|++-|+..+...+.-..-+|+-.+..+ | | -.++|.|.+=...
T Consensus 757 Is~aiGPq--------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~c----g-p------------fsVlP~lm~dY~T 811 (975)
T COG5181 757 ISRAIGPQ--------DVLDILLNNLKVQERQQRVCTSVAISIVAEYC----G-P------------FSVLPTLMSDYET 811 (975)
T ss_pred HHhhcCHH--------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc----C-c------------hhhHHHHHhcccC
Confidence 8753 222 24556666666665544444444443333211 1 0 1244555554445
Q ss_pred CCHHHHHHHHHHHHHHHc
Q 009647 462 ADIEAARLGLQFMELVLR 479 (530)
Q Consensus 462 ~d~~i~~~~L~~L~~il~ 479 (530)
++..++.-+|.++.-+++
T Consensus 812 Pe~nVQnGvLkam~fmFe 829 (975)
T COG5181 812 PEANVQNGVLKAMCFMFE 829 (975)
T ss_pred chhHHHHhHHHHHHHHHH
Confidence 555555555555555554
No 117
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.063 Score=58.98 Aligned_cols=281 Identities=16% Similarity=0.142 Sum_probs=163.7
Q ss_pred cCCHHHHHHHhc------CCCChHHHHH-HHHHHHHHhcC---ChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHH
Q 009647 136 AGAIPVLVQCLA------FGSPDEQLLE-AAWCLTNIAAG---KQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALG 204 (530)
Q Consensus 136 ~g~v~~Lv~lL~------~~~~~~~~~e-A~~~L~nia~~---~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~ 204 (530)
.|.++.++..|+ .++.+..|.+ |...++++++- ++.....+- -.++.++-.+++ +.--+|..|+|.++
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQS-PYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcC-chhHHHHHHHHHHH
Confidence 467778888887 3333445566 88899988831 111111111 145555555666 66789999999999
Q ss_pred hhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCCHHH
Q 009647 205 NVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEEL 281 (530)
Q Consensus 205 nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~d~~v 281 (530)
.++. .++++...-..++....+.|. +.+..++..|+.+|..+.++.. ...+.+. ..+.++.|+++.+.-+.+.
T Consensus 488 ~~~~--~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~--~~~e~~~~hvp~~mq~lL~L~ne~End~ 563 (1010)
T KOG1991|consen 488 QFSS--IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE--QADEKVSAHVPPIMQELLKLSNEVENDD 563 (1010)
T ss_pred HHHh--ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch--hhhhhHhhhhhHHHHHHHHHHHhcchhH
Confidence 9994 345555555566777777777 6788999999999999887642 1112111 2355556666766655555
Q ss_pred HHHHHHHHH-HhhcCCchhHHHHHhcCchHHHHHHHhcC--CCc---cchhhhHHHHhhhh---cCCccccchhcccCCC
Q 009647 282 TTEVAWVVV-YLSALSNVATSLLVKSGVLQLLVERLATS--NSL---QLLIPVLRSLGNLV---AGDSSTISDVLVPGHG 352 (530)
Q Consensus 282 ~~~a~~~L~-~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~---~v~~~al~~L~nl~---~~~~~~~~~~i~~g~~ 352 (530)
+..+.-.+. +.+..-......+ -..+.....+++..+ .++ .-...|..+|..|. ..-+.....+.+.
T Consensus 564 Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l--- 639 (1010)
T KOG1991|consen 564 LTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL--- 639 (1010)
T ss_pred HHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH---
Confidence 555544432 2221100111111 112334444455421 111 22233433333332 2211111111110
Q ss_pred cchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 353 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 353 ~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
...++|++-.+|.+.-.++-.+++-.+.+++...++..-.+. |+++.+.+.+.....+--.+..-+|.|+...
T Consensus 640 -e~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 640 -EPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTY 712 (1010)
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheee
Confidence 235777777788887778889999999998876544333333 3788888888888888888899999998764
No 118
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.0094 Score=55.77 Aligned_cols=254 Identities=17% Similarity=0.224 Sum_probs=150.6
Q ss_pred HHHHHHhcCCCChH-HHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHH
Q 009647 140 PVLVQCLAFGSPDE-QLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL 218 (530)
Q Consensus 140 ~~Lv~lL~~~~~~~-~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~ 218 (530)
..+.+.|...+.+. -.+.|...|.|+.+... +..+.+...+ .+...+...+++||.....
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~---------i~~i~ka~~d-~s~llkhe~ay~LgQ~~~~--------- 66 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGPAA---------IKAITKAFID-DSALLKHELAYVLGQMQDE--------- 66 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCChHH---------HHHHHHhccc-chhhhccchhhhhhhhccc---------
Confidence 34445554433222 12457777777765432 4445555554 4567788899999987753
Q ss_pred hcCChhhhHhhcCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 009647 219 SQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS 296 (530)
Q Consensus 219 ~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 296 (530)
.++|.|+..+... .+-++-.|..+|.++. . ...++.+-+..+++-.++..-+..++.++-+.+
T Consensus 67 --~Av~~l~~vl~desq~pmvRhEAaealga~~-~------------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 67 --DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D------------PESLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred --hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c------------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 4789999988754 5677788999998886 2 134455666665666677777777777776532
Q ss_pred chhH----HHH--H------hcCchHHHHHHHhcCCCccc-hhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHH
Q 009647 297 NVAT----SLL--V------KSGVLQLLVERLATSNSLQL-LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVK 363 (530)
Q Consensus 297 ~~~~----~~i--~------~~g~l~~Lv~lL~~~~~~~v-~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~ 363 (530)
.-.. ... + ..+-+..|-..|.+.+.+.. +..|+..|.|+- ....+-.|..
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g-----------------~EeaI~al~~ 194 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG-----------------TEEAINALID 194 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC-----------------cHHHHHHHHH
Confidence 1000 000 0 01112222222222221111 124444444432 2235666777
Q ss_pred HhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHH
Q 009647 364 CLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE 441 (530)
Q Consensus 364 lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~ 441 (530)
=+..++.-.|.+++++++.+-... .+|.|...|. ...+-||.+|+.||+.++..
T Consensus 195 ~l~~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------- 250 (289)
T KOG0567|consen 195 GLADDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------- 250 (289)
T ss_pred hcccchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-------------
Confidence 777778889999999999884432 5788888874 45678999999999998641
Q ss_pred HHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHH
Q 009647 442 HLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMEL 476 (530)
Q Consensus 442 ~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~ 476 (530)
. +++.|...+...++-+..-|--+|..
T Consensus 251 ~--------~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 251 D--------CVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred H--------HHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1 33556666665555554444444443
No 119
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.53 E-value=0.015 Score=60.38 Aligned_cols=318 Identities=18% Similarity=0.201 Sum_probs=178.1
Q ss_pred HHHHHHHhcCCCChH-HHH-HHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH-
Q 009647 139 IPVLVQCLAFGSPDE-QLL-EAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR- 214 (530)
Q Consensus 139 v~~Lv~lL~~~~~~~-~~~-eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r- 214 (530)
+|.|+..|...+... ..+ .+..+|..+|.... ....++ ..+..+-....+..+.+....++.+|.++........
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 477888887554321 334 48889999997643 222222 3444444444433456667777777777764332222
Q ss_pred ----HHHHhcCChhhhHhhcCC-----C--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--------
Q 009647 215 ----NVLLSQGALPPLARMMLP-----N--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-------- 275 (530)
Q Consensus 215 ----~~~~~~g~i~~L~~lL~~-----~--~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-------- 275 (530)
....+..++|.+.++... . +..+...+...+..+++.-++... ..++..+..++.
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q------~~~~~~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ------QEILDELYSLFLSPKSFSPF 153 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHccccccCCC
Confidence 233344477777776542 1 256666677777666665322221 223333333332
Q ss_pred --c------CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC--Cccccch
Q 009647 276 --R------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG--DSSTISD 345 (530)
Q Consensus 276 --~------~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~--~~~~~~~ 345 (530)
. .......-...+++.+-.... .. .....+..++.+...+.++..+..++++++-++.. +++....
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~--~~--~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~ 229 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLRKDVS--LP--DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE 229 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCCcccC--cc--CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH
Confidence 0 111222223333333332111 00 11125556666654455566666777777766644 1111000
Q ss_pred h-------------------------------cccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHH----
Q 009647 346 V-------------------------------LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH---- 390 (530)
Q Consensus 346 ~-------------------------------i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~---- 390 (530)
+ +--|+......+..|+.+|.+ +.+...|+..+.-|....+..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~ 307 (415)
T PF12460_consen 230 FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKE 307 (415)
T ss_pred HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcc
Confidence 0 001111223567777888876 567788888888877653322
Q ss_pred ---------HHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc
Q 009647 391 ---------KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS 461 (530)
Q Consensus 391 ---------~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~ 461 (530)
.|.++.. ++|.|++-.+..+...+..-..||+++..+ .|.++ ....+ ..++|.|++-|..
T Consensus 308 ~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~------vP~~v--l~~~l--~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 308 NHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNYLTALSHLLKN------VPKSV--LLPEL--PTLLPLLLQSLSL 376 (415)
T ss_pred ccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHHHHHHHHHHhh------CCHHH--HHHHH--HHHHHHHHHHhCC
Confidence 2334332 688888888877777888889999999874 24221 11112 3478999999999
Q ss_pred CCHHHHHHHHHHHHHHHcc
Q 009647 462 ADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 462 ~d~~i~~~~L~~L~~il~~ 480 (530)
+|+++...+|++|..++..
T Consensus 377 ~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 377 PDADVLLSSLETLKMILEE 395 (415)
T ss_pred CCHHHHHHHHHHHHHHHHc
Confidence 9999999999999999864
No 120
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.043 Score=54.97 Aligned_cols=246 Identities=15% Similarity=0.178 Sum_probs=163.6
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC---------chhHHHHHhcCchHHHHHHHhc---CC--Cccchhhh
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALS---------NVATSLLVKSGVLQLLVERLAT---SN--SLQLLIPV 328 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~---------~~~~~~i~~~g~l~~Lv~lL~~---~~--~~~v~~~a 328 (530)
...+++.|+.+|.+.+.+|...+.-.|..|++.+ ..-+.++++.++++.|++-+.+ +. ...-...+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 6789999999999999999999999999999632 1346778888999998877642 11 12234567
Q ss_pred HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH
Q 009647 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL 406 (530)
Q Consensus 329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l 406 (530)
+..+-|++...+.....+.+ .|.+..|..-+... -...+..|.-+++-+...+.+....+-..+++..+++-
T Consensus 203 L~vveNlv~~r~~~~~~~~e------~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~ 276 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVE------QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQ 276 (536)
T ss_pred HHHHHHHHhccHHHHHHHHH------hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhh
Confidence 88899999887777666653 46777766644322 22456677777777777666666666677888888877
Q ss_pred h---cCCC------hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHH
Q 009647 407 L---STSP------FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELV 477 (530)
Q Consensus 407 L---~~~~------~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~i 477 (530)
+ ...+ .+.-..---+||.+...+ +....+....++....=+++. .......++.+|..+
T Consensus 277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-----------~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~a 344 (536)
T KOG2734|consen 277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-----------ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHA 344 (536)
T ss_pred cchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-----------hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHH
Confidence 6 2222 233444555666665542 234455555555544444443 344456678888888
Q ss_pred HccCCCCcchhHHHHhchHHHHHHHhc----------CCcHHHHHHHHHHHHhhcCCCC
Q 009647 478 LRGMPNHEGTKLVEREDGIDAMERFQF----------HENEDLRNMANGLVDKYFGEDY 526 (530)
Q Consensus 478 l~~~~~~~~~~~i~~~ggl~~L~~L~~----------~~~~~i~~~A~~il~~~f~~~~ 526 (530)
+.+.+..++|..+.+.+|+..+-.+-. -.-.+.-+..+.||-.+|..-+
T Consensus 345 m~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~ 403 (536)
T KOG2734|consen 345 MFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLD 403 (536)
T ss_pred HhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhcc
Confidence 766555567888889999998866533 1234555666777777766433
No 121
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.30 E-value=0.00078 Score=54.20 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC--CCChhHHHHHHHHHHHhhcCC
Q 009647 195 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--PNKGSTVRTAAWALSNLIKGP 252 (530)
Q Consensus 195 v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~nL~~~~ 252 (530)
++..++..|+|+|..++..++.+.+.|+||.+++... ..+|-+++.|+||+.|||.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 4667899999999999999999999999999999765 457999999999999999874
No 122
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.27 E-value=0.025 Score=56.30 Aligned_cols=210 Identities=15% Similarity=0.197 Sum_probs=147.7
Q ss_pred hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCC---chhhHHH-h-hchHHHHHHHhccCCHHHHHHHHH
Q 009647 213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK---PATELIK-V-DGLLDAILRHLKRADEELTTEVAW 287 (530)
Q Consensus 213 ~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~v~-~-~~~l~~L~~lL~~~d~~v~~~a~~ 287 (530)
....+...+.+..|+..|..-+.+.++.++-.++++.+..... |..+.+. . ..++..|+..- +++++...+-.
T Consensus 68 La~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~ 145 (335)
T PF08569_consen 68 LAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGD 145 (335)
T ss_dssp HHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHH
Confidence 3345667788889999998888999999999999999864332 3333332 1 23444444333 35677777777
Q ss_pred HHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc
Q 009647 288 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS 367 (530)
Q Consensus 288 ~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~ 367 (530)
.|..++. .+.....++....+..+.+.. ..++-++...|..++.-+.+.........+..- -..++..+..+|.+
T Consensus 146 mlRec~k-~e~l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n---~d~ff~~~~~Ll~s 220 (335)
T PF08569_consen 146 MLRECIK-HESLAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN---YDRFFQKYNKLLES 220 (335)
T ss_dssp HHHHHTT-SHHHHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHHHHHHHHHHCT-
T ss_pred HHHHHHh-hHHHHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHccC
Confidence 7777776 566677888888899999988 588889999999999998887665544444321 13577788999999
Q ss_pred CcHhHHHHHHHHHHHHhcCCH--HHHHHHH-hCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647 368 EHRVLKKEAAWVLSNIAAGSV--EHKQLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 368 ~~~~i~~~A~~~Lsnl~~~~~--~~~~~li-~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 429 (530)
++.-+|+.+...|+.|..... ......+ +..-+..++.+|++.+..+|.||--+.--++.++
T Consensus 221 ~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 221 SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 999999999999999976421 2222223 3356888999999999999999999998888765
No 123
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.26 E-value=0.0024 Score=51.37 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC
Q 009647 372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 451 (530)
Q Consensus 372 i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~ 451 (530)
.|+.++++|+.++.+-...+...++. ++|+++..+.+++..||..|+.+|.|++.... .+.+.+ =..+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---------~~~l~~--f~~I 69 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVAR---------GEILPY--FNEI 69 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---------HHHHHH--HHHH
Confidence 37788899999877665556655554 89999999999999999999999999985321 011121 2457
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647 452 LSGFIDLVRSADIEAARLGLQFMELVLR 479 (530)
Q Consensus 452 i~~L~~lL~~~d~~i~~~~L~~L~~il~ 479 (530)
+..|+.++...|+.++. +.+.|.++++
T Consensus 70 F~~L~kl~~D~d~~Vr~-~a~~Ld~llk 96 (97)
T PF12755_consen 70 FDALCKLSADPDENVRS-AAELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCchhHHH-HHHHHHHHhc
Confidence 88899999988888665 4577887764
No 124
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.26 E-value=0.037 Score=57.87 Aligned_cols=268 Identities=16% Similarity=0.084 Sum_probs=164.3
Q ss_pred HHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHh---------cCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHH
Q 009647 115 LRELRRLLSRFEFPPIETALKAGAIPVLVQCL---------AFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLL 183 (530)
Q Consensus 115 ~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL---------~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L 183 (530)
+.+||-+ ++++. ..+.++....+..|..+- ....++....||..||.|+...++..++.++ +..+.+
T Consensus 2 L~~LRiL-sRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRIL-SRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHH-ccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3444444 55543 234455556666666665 2333456778999999999999887777766 788999
Q ss_pred HHhhcCC----CCHHHHHHHHHHHHhhcCCCchhHHHHHhc-CChhhhHhhcCC-----------------CChhHHHHH
Q 009647 184 IAHLGEK----SSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-GALPPLARMMLP-----------------NKGSTVRTA 241 (530)
Q Consensus 184 ~~lL~~~----~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g~i~~L~~lL~~-----------------~~~~~~~~a 241 (530)
+..|+.. .+.++.......|-=++...+..+..+++. +++..++..|.. .+.....-+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999874 257788888888877777777788776655 777777765531 123456677
Q ss_pred HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc---------CCHHHHHHHHHHHHHhhcCCchh-------HH----
Q 009647 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR---------ADEELTTEVAWVVVYLSALSNVA-------TS---- 301 (530)
Q Consensus 242 ~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~---------~d~~v~~~a~~~L~~L~~~~~~~-------~~---- 301 (530)
+..+.|+..........+ ..+.++.++.++.. +.......+..+|.++--..... ..
T Consensus 160 LKllFNit~~~~~~~~~~---~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~ 236 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEE---FSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP 236 (446)
T ss_pred HHHHHHhhhccCcccchh---hhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence 788888875532111101 23444444444321 12356777777777773211111 00
Q ss_pred HHHhcCchHHHHHHHhc----CC---CccchhhhHHHHhhhhcCCccccchhccc--------C--CCcchhhHHHHHHH
Q 009647 302 LLVKSGVLQLLVERLAT----SN---SLQLLIPVLRSLGNLVAGDSSTISDVLVP--------G--HGITDQVIAVLVKC 364 (530)
Q Consensus 302 ~i~~~g~l~~Lv~lL~~----~~---~~~v~~~al~~L~nl~~~~~~~~~~~i~~--------g--~~~~~~~l~~L~~l 364 (530)
......++..|+.+|.. .. -.+...|.+.+|.+++..+....+.+-.. . .+....+-..|+++
T Consensus 237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 237 EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL 316 (446)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence 00122345666666641 11 13567899999999998764332211100 0 00124567789999
Q ss_pred hccCcHhHHHHHHHHHHHHhcCC
Q 009647 365 LKSEHRVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 365 L~~~~~~i~~~A~~~Lsnl~~~~ 387 (530)
+.+..+.++..+...+..+|..+
T Consensus 317 mt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 317 MTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred hCCCCchHHHHHHHHHHHHHhhh
Confidence 99988999999999998887654
No 125
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.0099 Score=64.49 Aligned_cols=167 Identities=16% Similarity=0.203 Sum_probs=127.4
Q ss_pred cCCCChh-HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCc
Q 009647 230 MLPNKGS-TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 308 (530)
Q Consensus 230 L~~~~~~-~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~ 308 (530)
+.+.+.. -..++=.+++++..|++ ....+|.+++.+...|.++..-+-.-|...+...++.. +. +
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d---------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---a 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED---------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---A 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---H
Confidence 4444444 44455566788888853 24677888888888899998888777778887665221 11 3
Q ss_pred hHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCH
Q 009647 309 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 388 (530)
Q Consensus 309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~ 388 (530)
+..+..-+ .++++.++..|+|+++-+=. ..++ ..+++++.+++.++++.||+.|+.++.++-.-++
T Consensus 94 vNti~kDl-~d~N~~iR~~AlR~ls~l~~------~el~-------~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~ 159 (757)
T COG5096 94 VNTIQKDL-QDPNEEIRGFALRTLSLLRV------KELL-------GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK 159 (757)
T ss_pred HHHHHhhc-cCCCHHHHHHHHHHHHhcCh------HHHH-------HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH
Confidence 55666667 58999999999999997632 2333 3589999999999999999999999999976554
Q ss_pred HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 389 ~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
+. +.+.|.+..+..++.+.++.+..+|..+|..+..
T Consensus 160 ~l---~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 160 DL---YHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred hh---hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 43 3466788889999999999999999999999865
No 126
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.22 E-value=0.093 Score=54.88 Aligned_cols=234 Identities=18% Similarity=0.131 Sum_probs=146.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhh
Q 009647 190 KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPDPKPATELIKVD 264 (530)
Q Consensus 190 ~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~ 264 (530)
.+++.+...|+.||+|+...++..|+.+.+.|..+.++..|+.. +.++.--....|.-++... +.....++...
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~-~~~~~~L~~e~ 121 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALR-PDDRKKLIEEH 121 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-hhHHHHHHHHh
Confidence 36789999999999999999999999999999999999999864 5666666666666555432 33444555555
Q ss_pred chHHHHHHHhc----------c-------CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC--------
Q 009647 265 GLLDAILRHLK----------R-------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-------- 319 (530)
Q Consensus 265 ~~l~~L~~lL~----------~-------~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~-------- 319 (530)
+++..+...|. . .+.+...+++..+.|++...+.... -...+.++.++..|...
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~ 200 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSP 200 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCC
Confidence 67776666553 1 1446788999999999865433222 11234455555544322
Q ss_pred CCccchhhhHHHHhhhhcCCccc-------cchhcccCCCcchhhHHHHHHHhccC-----c---HhHHHHHHHHHHHHh
Q 009647 320 NSLQLLIPVLRSLGNLVAGDSST-------ISDVLVPGHGITDQVIAVLVKCLKSE-----H---RVLKKEAAWVLSNIA 384 (530)
Q Consensus 320 ~~~~v~~~al~~L~nl~~~~~~~-------~~~~i~~g~~~~~~~l~~L~~lL~~~-----~---~~i~~~A~~~Lsnl~ 384 (530)
+.......++.+|.|+--..... ...+.-.| .+...+..|+.+|... + ...-.-.+.+|.+++
T Consensus 201 ~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~--~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 201 PLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG--DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred cchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC--CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 12234556777777762111111 00000000 1334666777766431 1 134455666777777
Q ss_pred cCCHHHHHHHHh----------------CCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 385 AGSVEHKQLIHS----------------SEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 385 ~~~~~~~~~li~----------------~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
..+...++.+-. ..+-..|++++.+..+.++..++..|..+|.
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 765444443332 1245568999998888899989888888885
No 127
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.11 Score=57.65 Aligned_cols=322 Identities=15% Similarity=0.121 Sum_probs=177.9
Q ss_pred hHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 009647 89 TSSAVEELKS-AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 167 (530)
Q Consensus 89 ~~~~~~~l~~-~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~ 167 (530)
.+..+|.+.. ++.++++.|..++-.|++.+-++.++-+ ...+ ..+|...+.++...+++..=.-|+.+|..+|.
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 3445565555 4457789999999999999999976654 2112 23455556655533323333468899999996
Q ss_pred CChhhHHhhcCCcHHHHHhhcC-------CCCHHHHHHHHHHHHhhcCCCchh-HHHHHhcCChhh-hHhhcCCCChhHH
Q 009647 168 GKQEETKALLPALPLLIAHLGE-------KSSSPVAEQCAWALGNVAGEGEEF-RNVLLSQGALPP-LARMMLPNKGSTV 238 (530)
Q Consensus 168 ~~~~~~~~i~~~v~~L~~lL~~-------~~~~~v~~~a~~~L~nla~d~~~~-r~~~~~~g~i~~-L~~lL~~~~~~~~ 238 (530)
..----..+...+|.+++-|.. +....||+.|++.++.++.-.... -+-++.. ..+. |...+-++....+
T Consensus 410 rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 410 RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCR 488 (1133)
T ss_pred cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHh
Confidence 5432233333577777776653 124578999887777777533221 1111111 1111 2223335677888
Q ss_pred HHHHHHHHHhh-cCCCC-CchhhHH-----------------------HhhchHHHHH-HHh----ccCCHHHHHHHHHH
Q 009647 239 RTAAWALSNLI-KGPDP-KPATELI-----------------------KVDGLLDAIL-RHL----KRADEELTTEVAWV 288 (530)
Q Consensus 239 ~~a~~~L~nL~-~~~~~-~~~~~~v-----------------------~~~~~l~~L~-~lL----~~~d~~v~~~a~~~ 288 (530)
+.|.-+|--.. |..+- .. .+++ .-.+....++ .++ .+=|..++..++|+
T Consensus 489 RAAsAAlqE~VGR~~n~p~G-i~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHG-ISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCc-hhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 88888876544 32211 10 0111 0112222222 222 24478999999999
Q ss_pred HHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc-------cchhcccCCCcchhhHHHH
Q 009647 289 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST-------ISDVLVPGHGITDQVIAVL 361 (530)
Q Consensus 289 L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~-------~~~~i~~g~~~~~~~l~~L 361 (530)
|..|+...+++ ...+.+++++... .+.+...+.-+.-+.|.++...-.. .+..+.. -...++.+
T Consensus 568 L~~Ls~~~pk~----~a~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~----l~~ii~~~ 638 (1133)
T KOG1943|consen 568 LHKLSLTEPKY----LADYVLPPLLDST-LSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG----LLSIIPPI 638 (1133)
T ss_pred HHHHHHhhHHh----hcccchhhhhhhh-cCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh----hhhhccHH
Confidence 99999755543 3456788888776 3666666655555555544221110 0111110 00112222
Q ss_pred HHH-hccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 362 VKC-LKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 362 ~~l-L~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
..- +..+ ..-++...+..+-++........+..+-.+.-..+.+.+.+++ .+|..|.|+++.+++
T Consensus 639 ~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 639 CDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 221 1212 1245666777888887766555555444444455555565555 788899999988875
No 128
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.029 Score=58.79 Aligned_cols=220 Identities=15% Similarity=0.141 Sum_probs=138.5
Q ss_pred hHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHH---HHHHHhhcCC--chhH
Q 009647 226 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA---WVVVYLSALS--NVAT 300 (530)
Q Consensus 226 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~---~~L~~L~~~~--~~~~ 300 (530)
|..+..+.+..++.+|+-+|..|..+. +- ........++++.+++++|+..|. |..+|..-.+ .+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KL------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--cc------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 666666777888888888887777642 11 234456678889888889988874 5555555211 1111
Q ss_pred HHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHH
Q 009647 301 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL 380 (530)
Q Consensus 301 ~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~L 380 (530)
..-....++..+.+.+ ...+..++..|..+||-+-.-+++.+++-++ ..++..+-+.= .-.+..-...
T Consensus 275 e~kl~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd------KKlms~lRRkr-----~ahkrpk~l~ 342 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAV-RDRSLSVRVEAAKALGEFEQVSEEIIQQTLD------KKLMSRLRRKR-----TAHKRPKALY 342 (823)
T ss_pred hhhhHHHHHHHHHHHH-hcCceeeeehHHHHhchHHHhHHHHHHHHHH------HHHhhhhhhhh-----hcccchHHHH
Confidence 1112234677777777 4678889999999999987766665554442 22333221111 0011111122
Q ss_pred HHH--hcC-----------CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 009647 381 SNI--AAG-----------SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV 447 (530)
Q Consensus 381 snl--~~~-----------~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~ 447 (530)
++- ..| ..+.-..++.+|+--.++.-|.+.=.+||+.|+..++.++... ++.+ .
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss---P~FA---~------- 409 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS---PGFA---V------- 409 (823)
T ss_pred hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC---CCcH---H-------
Confidence 221 111 1223445788888888999998888899999999999998743 2322 1
Q ss_pred hcCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647 448 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 448 ~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~ 480 (530)
.++..|+++++.....+...++.+|..|...
T Consensus 410 --~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 410 --RALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred --HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 1346688999888888888888888887654
No 129
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.11 E-value=0.036 Score=53.24 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=138.0
Q ss_pred HHHHHHHHHHhcCChhhHHhhc--C-CcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCchhHHHHHh-cCChhhhHhhc
Q 009647 156 LEAAWCLTNIAAGKQEETKALL--P-ALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLS-QGALPPLARMM 230 (530)
Q Consensus 156 ~eA~~~L~nia~~~~~~~~~i~--~-~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~g~i~~L~~lL 230 (530)
.-|..|+.++.... +.+..+. + .-..++.+++.+ ...+++...+.++.-+.. ++.+.+.+-. -..+.-|++++
T Consensus 167 lfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli~iV 244 (432)
T COG5231 167 LFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLIAIV 244 (432)
T ss_pred HHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888653 3444443 2 445666777653 236788888777777776 4555533222 13466677777
Q ss_pred CCC-ChhHHHHHHHHHHHhhcCCCCCch-hhHHHhhchHHHHHHHhc--cCCHHHHHHHHHHHHHhhcC-----------
Q 009647 231 LPN-KGSTVRTAAWALSNLIKGPDPKPA-TELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSAL----------- 295 (530)
Q Consensus 231 ~~~-~~~~~~~a~~~L~nL~~~~~~~~~-~~~v~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~----------- 295 (530)
+.. ...+.+-++..+.|+|. +.|+.. ........+.|..-.++. ..|+++..+.-..=+.|...
T Consensus 245 k~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~ 323 (432)
T COG5231 245 KERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYL 323 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 654 67889999999999996 334332 222222334444333333 45666655443322222111
Q ss_pred ----------C---------chhHHHHHh--cCchHHHHHHHhcCCCcc-chhhhHHHHhhhhcCCccccchhcccCCCc
Q 009647 296 ----------S---------NVATSLLVK--SGVLQLLVERLATSNSLQ-LLIPVLRSLGNLVAGDSSTISDVLVPGHGI 353 (530)
Q Consensus 296 ----------~---------~~~~~~i~~--~g~l~~Lv~lL~~~~~~~-v~~~al~~L~nl~~~~~~~~~~~i~~g~~~ 353 (530)
+ ..+...+.+ ..++..|.++|+ ++++. ...-||.-|+.++...++....+.
T Consensus 324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq-~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~------ 396 (432)
T COG5231 324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ-SNNPNTWICVACSDIFQLVRASPEINAVLS------ 396 (432)
T ss_pred HHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh-cCCCCceEeeeHhhHHHHHHhCchHHHHHH------
Confidence 1 112233332 236778888885 66655 556889999999988877666555
Q ss_pred chhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647 354 TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385 (530)
Q Consensus 354 ~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~ 385 (530)
..|+=..++.+++|+++.|+-+|..++..+..
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 46799999999999999999999999887654
No 130
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.15 Score=58.54 Aligned_cols=302 Identities=16% Similarity=0.132 Sum_probs=162.0
Q ss_pred HHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChh
Q 009647 158 AAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS 236 (530)
Q Consensus 158 A~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~ 236 (530)
||.-+..|+...-+..+..+ ..||.|.++=-+ |+..|+..-..+..-+..|+...-+..+. .++.-|+.-+.+....
T Consensus 977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yD-P~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewR 1054 (1702)
T KOG0915|consen 977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYD-PDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWR 1054 (1702)
T ss_pred hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccC-CcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHH
Confidence 44455555544333333333 378988888766 78889887777777777776655554443 4667777777788899
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHH---HHHHHHHHhhcC--Cc---hhHHHHHhcCc
Q 009647 237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTT---EVAWVVVYLSAL--SN---VATSLLVKSGV 308 (530)
Q Consensus 237 ~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~---~a~~~L~~L~~~--~~---~~~~~i~~~g~ 308 (530)
+++.+|.+|..|.++.+.....+.+ ......+.+.+++=.+.++. .++.+|+.|+-. +. ..-+.++ ..+
T Consensus 1055 VReasclAL~dLl~g~~~~~~~e~l--pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~i 1131 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRPFDQVKEKL--PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DII 1131 (1702)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHH
Confidence 9999999999999985322111111 23333444444433344444 456666666531 11 1111111 123
Q ss_pred hHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh-----------HHHHHH
Q 009647 309 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-----------LKKEAA 377 (530)
Q Consensus 309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~-----------i~~~A~ 377 (530)
+|.|++-=.-+.-++++.-++.++-.++..........+ ...+|.|...++.-.+. +..+|+
T Consensus 1132 LPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-------~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~eal 1204 (1702)
T KOG0915|consen 1132 LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-------PKLIPLLLNAYSELEPQVLNYLSLRLINIETEAL 1204 (1702)
T ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-------hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHH
Confidence 333332100134567788889999998877766544433 35677777766554332 233333
Q ss_pred HHHHH-HhcCCH--HHHHHHHh-------CCcHHHHHHHhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH
Q 009647 378 WVLSN-IAAGSV--EHKQLIHS-------SEALALLLHLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL 446 (530)
Q Consensus 378 ~~Lsn-l~~~~~--~~~~~li~-------~~~l~~Li~lL~~~~-~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l 446 (530)
-.+.- ++.++| +-+..+++ ..++|.+.+++..+- -..+--++..++-++... ...-+|+ .
T Consensus 1205 Dt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~-~~emtP~-----s--- 1275 (1702)
T KOG0915|consen 1205 DTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL-GSEMTPY-----S--- 1275 (1702)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh-ccccCcc-----h---
Confidence 33332 222222 11111111 135666666665432 234444555555554321 0001121 1
Q ss_pred HhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647 447 VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482 (530)
Q Consensus 447 ~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~ 482 (530)
-..+..++-.++..++.+.+....+...++....
T Consensus 1276 --gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1276 --GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred --hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence 1245666777777777777766666666665543
No 131
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.07 E-value=0.11 Score=56.98 Aligned_cols=376 Identities=13% Similarity=0.081 Sum_probs=203.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHH
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLI 184 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~ 184 (530)
..++..+..+...+-.+.+.-. .....++++|.+.+++..+. +.++..|...+.++..-........-...+.++
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~~~----~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~ 322 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKVLE----SEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDDDVVKSLTESLV 322 (759)
T ss_pred ccchhhHHHHHhhhHHHHHHHH----HHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHH
Confidence 3445566666665555422111 25667889999999887544 444444667777776322211111114677888
Q ss_pred HhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhh
Q 009647 185 AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVD 264 (530)
Q Consensus 185 ~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~ 264 (530)
+...+ ++..++....-...-++..-.+ ....-..+++...+++....+.+..++.-..-++...+.....+ +...
T Consensus 323 ~~~~d-~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~-i~~~ 397 (759)
T KOG0211|consen 323 QAVED-GSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPN-IPDS 397 (759)
T ss_pred HHhcC-hhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccc-cchh
Confidence 87776 5666655544333333321111 11122346667777777666666666665666665433212222 2245
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccc
Q 009647 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS 344 (530)
Q Consensus 265 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~ 344 (530)
.++|.+-.+..+.+..+....+.....+..-.+ ....+ ....+.++..+ ....+.++....+.+..+-...+..-.
T Consensus 398 ~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l-~de~~~V~lnli~~ls~~~~v~~v~g~ 473 (759)
T KOG0211|consen 398 SILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNL-KDEDPIVRLNLIDKLSLLEEVNDVIGI 473 (759)
T ss_pred hhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhc-chhhHHHHHhhHHHHHHHHhccCcccc
Confidence 678888888888888888777776666653222 00000 12344555555 355666666666666555433332211
Q ss_pred hhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHH
Q 009647 345 DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGN 424 (530)
Q Consensus 345 ~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~n 424 (530)
... ....+|.+..+-......++.+..|.+--++.... ..+++...-+.+...+.+....+++.|+..+.-
T Consensus 474 ~~~------s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 474 STV------SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred hhh------hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 111 24578888887777778899999888888765321 233333344455555667777899998888888
Q ss_pred hcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc
Q 009647 425 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF 504 (530)
Q Consensus 425 l~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~ 504 (530)
++..- |.. -++ ...++.++.+...+........+.++..+...... -+....-++.+..+..
T Consensus 545 l~~~~----G~~----w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~-----ei~~~~Llp~~~~l~~ 606 (759)
T KOG0211|consen 545 LVETF----GSE----WAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ-----EITCEDLLPVFLDLVK 606 (759)
T ss_pred HHHHh----Ccc----hhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc-----HHHHHHHhHHHHHhcc
Confidence 77531 110 111 12344555554444444455555555544433222 1222233455555666
Q ss_pred CCcHHHHHHHHHHHHhh
Q 009647 505 HENEDLRNMANGLVDKY 521 (530)
Q Consensus 505 ~~~~~i~~~A~~il~~~ 521 (530)
++.++|+-.+.+.+.++
T Consensus 607 D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 607 DPVANVRINVAKHLPKI 623 (759)
T ss_pred CCchhhhhhHHHHHHHH
Confidence 66666666555555544
No 132
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.6 Score=48.64 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=158.3
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
..|.|-.-|++ .-.-|.-.++.++..++..+ .-...++ ..+..|-.+|+++....+-.|..+|..|+.-. |+
T Consensus 265 ~rpfL~~wls~-k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~-P~--- 336 (898)
T COG5240 265 LRPFLNSWLSD-KFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY-PQ--- 336 (898)
T ss_pred HHHHHHHHhcC-cchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC-Cc---
Confidence 34445455544 34567777777777766533 1112222 24566777888889999999999999998542 32
Q ss_pred hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCcc-chhhhHHHHhhhhc
Q 009647 259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQ-LLIPVLRSLGNLVA 337 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~-v~~~al~~L~nl~~ 337 (530)
.| .-+=+-+-.++.+.+..+-..|+-+|.. .|.++.+..++.. ++..+.-+ +++.. +...|++.|++...
T Consensus 337 -kv--~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~~--I~sfvhD~--SD~FKiI~ida~rsLsl~Fp 407 (898)
T COG5240 337 -KV--SVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVNL--IPSFVHDM--SDGFKIIAIDALRSLSLLFP 407 (898)
T ss_pred -ee--eecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHHH--HHHHHHhh--ccCceEEeHHHHHHHHhhCc
Confidence 11 1233445566677776776666655532 3566666655432 44444433 23333 34577777776542
Q ss_pred CCccccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647 338 GDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 416 (530)
Q Consensus 338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~ 416 (530)
. ... ..+..|...|. .+....++.+.-+|+.+....|+.... ++..|+..+.+-++ -+
T Consensus 408 ~---k~~-----------s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey--~~ 466 (898)
T COG5240 408 S---KKL-----------SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY--HQ 466 (898)
T ss_pred H---HHH-----------HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch--hH
Confidence 2 111 24455555543 345577888888888887766554433 34456666654432 34
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchH
Q 009647 417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGI 496 (530)
Q Consensus 417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl 496 (530)
.++..|+-+-... +...+|. .+++++.+ -+--.+.-+...|+.+|...--...+....+. ..
T Consensus 467 I~vrIL~iLG~Eg-P~a~~P~---~yvrhIyN---------R~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s-----v~ 528 (898)
T COG5240 467 ITVRILGILGREG-PRAKTPG---KYVRHIYN---------RLILENNIVRSAAVQALSKFALNISDVVSPQS-----VE 528 (898)
T ss_pred HHHHHHHHhcccC-CCCCCcc---hHHHHHHH---------HHHHhhhHHHHHHHHHHHHhccCccccccHHH-----HH
Confidence 4666666654421 1111232 33443322 12223344555666766554322222111222 23
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 497 DAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 497 ~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
..|..+.++.+++|+++|.-.++..
T Consensus 529 ~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 529 NALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhh
Confidence 4577778888999999988777643
No 133
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.92 Score=50.27 Aligned_cols=308 Identities=18% Similarity=0.204 Sum_probs=151.4
Q ss_pred cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcC
Q 009647 129 PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAG 208 (530)
Q Consensus 129 ~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~ 208 (530)
+.....+.=+++-++..++++- --++-.|+|.++.+++-+-..-.-...++....+.|.++++..|+-.|+-+|..+..
T Consensus 454 ~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~ 532 (1010)
T KOG1991|consen 454 PYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFIS 532 (1010)
T ss_pred chHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence 3333444334455555555432 235556999999999543322222224666677777744677899999999999988
Q ss_pred CCchhHHHHHhc--CChhhhHhhcCCCC-----------------------hhHHHHHHHHHHHhhcC---CCCCchhhH
Q 009647 209 EGEEFRNVLLSQ--GALPPLARMMLPNK-----------------------GSTVRTAAWALSNLIKG---PDPKPATEL 260 (530)
Q Consensus 209 d~~~~r~~~~~~--g~i~~L~~lL~~~~-----------------------~~~~~~a~~~L~nL~~~---~~~~~~~~~ 260 (530)
+.+.....+..+ +.++.|+++.+.-+ .++..+.+.++..+... .++......
T Consensus 533 ~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~ 612 (1010)
T KOG1991|consen 533 NQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKA 612 (1010)
T ss_pred cchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHH
Confidence 655443333322 23334444443211 23444555555555442 111111123
Q ss_pred HHhhchHHHHHHHhcc-------------------------CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHH
Q 009647 261 IKVDGLLDAILRHLKR-------------------------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVER 315 (530)
Q Consensus 261 v~~~~~l~~L~~lL~~-------------------------~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~l 315 (530)
+...|++.++-.+|.+ .-.++...++..+.+++...++..-.+ =|+++.+.+.
T Consensus 613 iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~ 690 (1010)
T KOG1991|consen 613 IAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEV 690 (1010)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHH
Confidence 3345655555544431 122333334444444433221111111 1344555555
Q ss_pred HhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc--HhHHHHHHHHHHHHhcCCHHHHHH
Q 009647 316 LATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH--RVLKKEAAWVLSNIAAGSVEHKQL 393 (530)
Q Consensus 316 L~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~--~~i~~~A~~~Lsnl~~~~~~~~~~ 393 (530)
+. .......+...-+|.|+++........--+. ..-.+..+..+|.+.+ ..=...||..+.-+.-....++++
T Consensus 691 ~~-~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y----~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq 765 (1010)
T KOG1991|consen 691 FQ-DDGIDYFTDMMPALHNYVTYGTPSLLSNPDY----LQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQ 765 (1010)
T ss_pred Hh-hhhHHHHHHHHHHHhhheeeCchhhhccchH----HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhh
Confidence 53 3445566677777777775443321110000 0123334444554432 122445666666554322223332
Q ss_pred HHhCCcHHHHHHH----hcC--CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhh
Q 009647 394 IHSSEALALLLHL----LST--SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL 458 (530)
Q Consensus 394 li~~~~l~~Li~l----L~~--~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~l 458 (530)
.+|.++.+ +.. .+...+..+..++.|...- +| ...++.|-+.|+...+..+
T Consensus 766 -----~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyy------nP---~ltL~iLe~~~~~~~ff~~ 822 (1010)
T KOG1991|consen 766 -----YIPLFLELALSRLTREVETSELRVMLLEVVINALYY------NP---KLTLGILENQGFLNNFFTL 822 (1010)
T ss_pred -----HhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc------Cc---HHHHHHHHHcCCcccHHHH
Confidence 24444443 333 4456777777776665542 23 4667888888887665544
No 134
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.38 Score=53.61 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=91.7
Q ss_pred CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHhhcCCCCC
Q 009647 178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPK 255 (530)
Q Consensus 178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~~ 255 (530)
.++..|+.-|++ .+..|+-.|+..+|.++...| +..+. +|...+.++... +......++.+|+.|+...--.
T Consensus 341 ~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHhccC-CcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 466667777776 678999999999999998665 22233 445566655543 4677779999999999753222
Q ss_pred chhhHHHhhchHHHHHHHhccCC--------HHHHHHHHHHHHHhhcCCc-hhHHHHHhcCchHHH-HHHHhcCCCccch
Q 009647 256 PATELIKVDGLLDAILRHLKRAD--------EELTTEVAWVVVYLSALSN-VATSLLVKSGVLQLL-VERLATSNSLQLL 325 (530)
Q Consensus 256 ~~~~~v~~~~~l~~L~~lL~~~d--------~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~l~~L-v~lL~~~~~~~v~ 325 (530)
+ .. ...++|.+++-+..++ ..|+..||..++.+++... ....-++. .+.+.| ...+ -.++..++
T Consensus 415 p--s~--l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~Al-FDrevncR 488 (1133)
T KOG1943|consen 415 P--SL--LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVAL-FDREVNCR 488 (1133)
T ss_pred h--HH--HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHh-cCchhhHh
Confidence 2 22 2478888888776433 3578888877777776432 22222211 122222 2222 24666777
Q ss_pred hhhHHHHhhhh
Q 009647 326 IPVLRSLGNLV 336 (530)
Q Consensus 326 ~~al~~L~nl~ 336 (530)
..|..|+-..+
T Consensus 489 RAAsAAlqE~V 499 (1133)
T KOG1943|consen 489 RAASAALQENV 499 (1133)
T ss_pred HHHHHHHHHHh
Confidence 78877777665
No 135
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.87 E-value=0.055 Score=53.59 Aligned_cols=194 Identities=22% Similarity=0.260 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHH--HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHh--cCC
Q 009647 94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETAL--KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIA--AGK 169 (530)
Q Consensus 94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii--~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia--~~~ 169 (530)
++|...+..+.......|..|+..+.+++...--+ +.+- ...+++.+...++.+...+ +.-|+.++.-++ -|.
T Consensus 43 ~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~--d~v~~~~~tL~~~~~k~lkkg~~~E-~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 43 DKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP--DFVEDRRETLLDALLKSLKKGKSEE-QALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHhhhcCC
Confidence 45667776666667889999999999998765332 3332 2557888888898776533 344666555555 333
Q ss_pred hhhHHhhc-CCcHHHHHhhcCCC-CHHHHHHHHHHHHhhcC---CCchhHHHHHhcCChhhh--HhhcC----------C
Q 009647 170 QEETKALL-PALPLLIAHLGEKS-SSPVAEQCAWALGNVAG---EGEEFRNVLLSQGALPPL--ARMML----------P 232 (530)
Q Consensus 170 ~~~~~~i~-~~v~~L~~lL~~~~-~~~v~~~a~~~L~nla~---d~~~~r~~~~~~g~i~~L--~~lL~----------~ 232 (530)
......++ ...|.|.+.+.+.+ .+.+|..|+.+|+-++. +.++.....++ .+..+ ....+ .
T Consensus 120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence 33455555 58888988887643 46777888888877653 22222221111 11211 11111 1
Q ss_pred CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 233 NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 233 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
+++.+..+|+-+.+-|...-++....+. ....+|.|..+|.++|.+|+..|-.+|.-|..
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~--~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDL--LEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2356777766555555533211111222 35789999999999999999999888776654
No 136
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.82 E-value=0.8 Score=47.57 Aligned_cols=298 Identities=18% Similarity=0.179 Sum_probs=170.9
Q ss_pred CHHHHHHHHHHHHHHHcCCCCC----cHHHHHHcCCHHHHHHHhcCC----CC-hHHHHH-HHHHHHHHhcC-ChhhHHh
Q 009647 107 AMQKRVNALRELRRLLSRFEFP----PIETALKAGAIPVLVQCLAFG----SP-DEQLLE-AAWCLTNIAAG-KQEETKA 175 (530)
Q Consensus 107 d~~~~~~a~~~lr~lls~~~~~----~~~~ii~~g~v~~Lv~lL~~~----~~-~~~~~e-A~~~L~nia~~-~~~~~~~ 175 (530)
+.+.....+.++.+++...... ......+..++|.+++..... .. +....+ ++..+..+... +.+.-+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5666777888888887654322 334455666899998877422 11 112233 44455544433 2222333
Q ss_pred hc-CCcHHHHH-----hhc--CC----CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHH
Q 009647 176 LL-PALPLLIA-----HLG--EK----SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAA 242 (530)
Q Consensus 176 i~-~~v~~L~~-----lL~--~~----~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~ 242 (530)
++ .+...++. -+. .+ .......-...+++.+-.+..-. -....+..++.+..+ .+...+..++
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 33 33443330 000 00 01122222334444443322110 111255566665543 4577788888
Q ss_pred HHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccC----CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh
Q 009647 243 WALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRA----DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA 317 (530)
Q Consensus 243 ~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~----d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~ 317 (530)
.+++.|.. +-+.. +. ...++..+..-+ ... ......-..|...-|.-..+... ...+..|+.+|.
T Consensus 212 ~~la~LvN-K~~~~--~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~ 281 (415)
T PF12460_consen 212 QLLASLVN-KWPDD--DD--LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLS 281 (415)
T ss_pred HHHHHHHc-CCCCh--hh--HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhC
Confidence 88888884 31111 11 234555555444 222 23455566677666654322222 234567888773
Q ss_pred cCCCccchhhhHHHHhhhhcCCccc-------------cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHh
Q 009647 318 TSNSLQLLIPVLRSLGNLVAGDSST-------------ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384 (530)
Q Consensus 318 ~~~~~~v~~~al~~L~nl~~~~~~~-------------~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~ 384 (530)
+ +++-..|.++++-+....+.. .|.+. ..++|.|++-....+...+..-..+|+++.
T Consensus 282 -~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-------~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll 351 (415)
T PF12460_consen 282 -S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-------TQVLPKLLEGFKEADDEIKSNYLTALSHLL 351 (415)
T ss_pred -C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-------HHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Confidence 3 567788899999888773332 23443 257888888887777678888899999999
Q ss_pred cCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 385 AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 385 ~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
.+-|..+-.---..++|.|++.|..++.+++..+..+|..+...
T Consensus 352 ~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 352 KNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 88765442221235899999999999999999999999999864
No 137
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.75 E-value=0.07 Score=55.21 Aligned_cols=129 Identities=10% Similarity=0.114 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC
Q 009647 152 DEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 231 (530)
Q Consensus 152 ~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~ 231 (530)
+.++.|++++++.++..+. ..+.+-.+|..|-.+|++ +....|-.|+++|..++...|+.- ..++ +-+-+++.
T Consensus 278 emV~lE~Ar~v~~~~~~nv-~~~~~~~~vs~L~~fL~s-~rv~~rFsA~Riln~lam~~P~kv---~vcN--~evEsLIs 350 (898)
T COG5240 278 EMVFLEAARAVCALSEENV-GSQFVDQTVSSLRTFLKS-TRVVLRFSAMRILNQLAMKYPQKV---SVCN--KEVESLIS 350 (898)
T ss_pred hhhhHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhhCCcee---eecC--hhHHHHhh
Confidence 4567899999998885541 112222477888888887 678899999999999997665421 1111 22333444
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009647 232 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 293 (530)
Q Consensus 232 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 293 (530)
+.+-.+ +++++..|......+. .+- .-..+|.+++=+.++-.-+..+|+..|+.+-
T Consensus 351 d~Nr~I---styAITtLLKTGt~e~-idr--Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~F 406 (898)
T COG5240 351 DENRTI---STYAITTLLKTGTEET-IDR--LVNLIPSFVHDMSDGFKIIAIDALRSLSLLF 406 (898)
T ss_pred cccccc---hHHHHHHHHHcCchhh-HHH--HHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence 444333 4445555543221111 111 1133344443333333456677777766655
No 138
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.73 E-value=0.26 Score=54.21 Aligned_cols=364 Identities=17% Similarity=0.159 Sum_probs=208.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh-cCCcHHH
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL-LPALPLL 183 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i-~~~v~~L 183 (530)
.+....+..|...+-.++...+.+- =...-+.+.++......+. .+.+-.+.....++..-. . ... ...++.+
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~-~v~~~~~~~~~~L~~~~~-~-~~~~~~~~~~~ 360 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSW-RVSYMVADKFSELSSAVG-P-SATRTQLVPPV 360 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhH-HHHHHHhhhhhhHHHHhc-c-ccCcccchhhH
Confidence 3344567777788877766544331 1123466777777764431 121222222222221100 0 000 1257777
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhcCC-CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647 184 IAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 262 (530)
Q Consensus 184 ~~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~ 262 (530)
..+++. ...+++..++.-...++.. +..++..+....++|.+-.++.+.+..++...+.....+.-- .|++ ..
T Consensus 361 ~~l~~~-~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~-~~k~--~t-- 434 (759)
T KOG0211|consen 361 SNLLKD-EEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPI-LPKE--RT-- 434 (759)
T ss_pred HHHhcc-hhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCcc-CCcC--cC--
Confidence 777776 4556666665555555532 223344455566678888888787777777766666555421 1111 11
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST 342 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~ 342 (530)
....+|.+...++..+++++.+..|.+..+-...+..--..+....++.++.+- ......++...++.+-.++....
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wRvr~ail~~ip~la~q~~-- 511 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWRVRLAILEYIPQLALQLG-- 511 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHhhh--
Confidence 357788889999999999999999988666543332222233445666666644 23345566666666665553322
Q ss_pred cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc--CCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHH
Q 009647 343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAY 420 (530)
Q Consensus 343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~--~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~ 420 (530)
..+++ ...-+.+...+.+.-..|++.|+..+.-++. |..-.++ ..+|.++.....++...|...+.
T Consensus 512 -~~~~~------~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~-----~~i~k~L~~~~q~~y~~R~t~l~ 579 (759)
T KOG0211|consen 512 -VEFFD------EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARL-----EEIPKLLAMDLQDNYLVRMTTLF 579 (759)
T ss_pred -hHHhh------HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH-----HhhHHHHHHhcCcccchhhHHHH
Confidence 12221 2344444555555566888888888877764 3222222 25677777776667888888888
Q ss_pred HHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHH
Q 009647 421 VLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAME 500 (530)
Q Consensus 421 aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~ 500 (530)
++.-++... | +.+....+++.+.++...+.+.+...++..|..+...... -..+.-..+.++
T Consensus 580 si~~la~v~----g---------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~-----~~~~~~v~pll~ 641 (759)
T KOG0211|consen 580 SIHELAEVL----G---------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE-----SVRDEEVLPLLE 641 (759)
T ss_pred HHHHHHHHh----c---------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch-----HHHHHHHHHHHH
Confidence 877665321 2 2344455788999999999999999999999888764322 112223344455
Q ss_pred HHhcCCcHHHHHH
Q 009647 501 RFQFHENEDLRNM 513 (530)
Q Consensus 501 ~L~~~~~~~i~~~ 513 (530)
.|-.+++.+++-.
T Consensus 642 ~L~~d~~~dvr~~ 654 (759)
T KOG0211|consen 642 TLSSDQELDVRYR 654 (759)
T ss_pred HhccCcccchhHH
Confidence 5555555444433
No 139
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.72 E-value=0.034 Score=50.40 Aligned_cols=92 Identities=25% Similarity=0.251 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhc-hHHHH
Q 009647 192 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG-LLDAI 270 (530)
Q Consensus 192 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~-~l~~L 270 (530)
++.+|..++-++|-+|.-.+..- ...+|.+...|.++++.++++|+.+|+.|...+- +...| .+..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-------ik~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-------IKVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-------eeehhhhhHHH
Confidence 47899999999999997554332 3457889999999999999999999999986531 21234 34888
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcC
Q 009647 271 LRHLKRADEELTTEVAWVVVYLSAL 295 (530)
Q Consensus 271 ~~lL~~~d~~v~~~a~~~L~~L~~~ 295 (530)
+.++.++|++|+..|..++..+...
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999874
No 140
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.70 E-value=0.0072 Score=48.59 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=64.5
Q ss_pred hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHH
Q 009647 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLH 405 (530)
Q Consensus 326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~ 405 (530)
.-++.+|+.++.+-.......++ .++|+++..+.+++..||..||.+|.|++......+-.-+ ..+++.|.+
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~-------~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~k 75 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLD-------EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCK 75 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHH-------HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34555666665544444555553 5999999999999999999999999999865433222211 247889999
Q ss_pred HhcCCChhHHHHHHHHHHHh
Q 009647 406 LLSTSPFDIKKEVAYVLGNL 425 (530)
Q Consensus 406 lL~~~~~~v~~eA~~aL~nl 425 (530)
++.+.++.||..| +.|-++
T Consensus 76 l~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 76 LSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHcCCchhHHHHH-HHHHHH
Confidence 9999999988766 555444
No 141
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.68 E-value=0.0013 Score=65.97 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=90.8
Q ss_pred hchHHHHHHHhccCCHHHHHHHHHHHHHhhcC----Cch--hHHHHHhcCchHHHHHHHh--cCCCccchhhhHHHHhhh
Q 009647 264 DGLLDAILRHLKRADEELTTEVAWVVVYLSAL----SNV--ATSLLVKSGVLQLLVERLA--TSNSLQLLIPVLRSLGNL 335 (530)
Q Consensus 264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~----~~~--~~~~i~~~g~l~~Lv~lL~--~~~~~~v~~~al~~L~nl 335 (530)
..+...++..|.+..-..+..++|+++++++. .+. ..+.-+..-.+.+++..-. ...+..|...+.++|||+
T Consensus 432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnl 511 (728)
T KOG4535|consen 432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNL 511 (728)
T ss_pred HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence 35555566666655567899999999999862 111 1111111112222222211 234567889999999998
Q ss_pred hcCCccccchhcccCCC-cchhhHHHHHHH-hccCcHhHHHHHHHHHHHHhcCCHHHHHHH-HhCCcHHHHHHHh-cCCC
Q 009647 336 VAGDSSTISDVLVPGHG-ITDQVIAVLVKC-LKSEHRVLKKEAAWVLSNIAAGSVEHKQLI-HSSEALALLLHLL-STSP 411 (530)
Q Consensus 336 ~~~~~~~~~~~i~~g~~-~~~~~l~~L~~l-L~~~~~~i~~~A~~~Lsnl~~~~~~~~~~l-i~~~~l~~Li~lL-~~~~ 411 (530)
... .|.++.+|-. ...+.+..+... .......||-+||++++|+..+..--.+.. ....+++.|..++ ++.+
T Consensus 512 lQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~N 587 (728)
T KOG4535|consen 512 LQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKN 587 (728)
T ss_pred HHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhcc
Confidence 733 2333333200 011122222211 122355899999999999987542211111 1223577788877 5789
Q ss_pred hhHHHHHHHHHHHhcC
Q 009647 412 FDIKKEVAYVLGNLCV 427 (530)
Q Consensus 412 ~~v~~eA~~aL~nl~~ 427 (530)
++||..|+.+|.--..
T Consensus 588 FKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 588 FKVRIRAAAALSVPGK 603 (728)
T ss_pred ceEeehhhhhhcCCCC
Confidence 9999999999876543
No 142
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.53 E-value=0.038 Score=55.89 Aligned_cols=184 Identities=17% Similarity=0.164 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcC---CCCCchhhHHHh-hchHH
Q 009647 193 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG---PDPKPATELIKV-DGLLD 268 (530)
Q Consensus 193 ~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~---~~~~~~~~~v~~-~~~l~ 268 (530)
.-++..|..+++-+.-+..--.+......+...++..|.+.....+..++|+++|+... +-|.+....-.. .-.+.
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~ 484 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLL 484 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHH
Confidence 34667777777777664333334444555666677777777778899999999998752 223221111011 11222
Q ss_pred HHHHHhc---cCCHHHHHHHHHHHHHhhcCCchhHHHHHhc-------CchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 269 AILRHLK---RADEELTTEVAWVVVYLSALSNVATSLLVKS-------GVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 269 ~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~-------g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
.+.+.-. -....|..++..+|.++.. ..+.+.+. |....+...........|+.+||.++||+..+
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 2332222 2235688899999998875 12222221 22222221111234568899999999999977
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhc
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAA 385 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~ 385 (530)
..-..+..- +-..+++.|..++. +.+.+||..|+.+|+--..
T Consensus 561 ~a~~lq~~~-----wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 561 PALPLQTAP-----WASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred ccccccCCC-----chHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 644222211 12357888888885 5677999999999986643
No 143
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.43 E-value=0.25 Score=53.95 Aligned_cols=228 Identities=14% Similarity=0.071 Sum_probs=145.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHh
Q 009647 185 AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKV 263 (530)
Q Consensus 185 ~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~ 263 (530)
..|..+..|.+.-.+.|+++..+........ +. .-.+...+..+. +..+.++-.|+.+++..|. ++..... .
T Consensus 456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~---~~vl~~~--~ 528 (1005)
T KOG2274|consen 456 NGLVYQESPFLLLRAFLTISKFSSSTVINPQ-LL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK---VKVLLSL--Q 528 (1005)
T ss_pred hhcccccCHHHHHHHHHHHHHHHhhhccchh-HH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC---ceecccc--c
Confidence 3344445666667999999977652111111 11 112333444444 3456667777777777773 3443333 3
Q ss_pred hchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc-CCCccchhhhHHHHhhhhcCCccc
Q 009647 264 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSST 342 (530)
Q Consensus 264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~ 342 (530)
.+++..|.++......++..-...+|+..+.-+++.. +..+..++|..+.++.. +++|.+...+-.++-.++...+.+
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~ 607 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY 607 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh
Confidence 4677777888877888999999999999998666544 44567788888777653 456766666766666666432222
Q ss_pred cchhcccCCCcchhhHHHHHHHhccCc----HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHH
Q 009647 343 ISDVLVPGHGITDQVIAVLVKCLKSEH----RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKE 417 (530)
Q Consensus 343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~----~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~e 417 (530)
-. + ....+|.|++.|..+. .....-|+-+|..+..+.+.-....+-.-++|++.++. +++|..+-..
T Consensus 608 g~-m-------~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~ 679 (1005)
T KOG2274|consen 608 GP-M-------QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQN 679 (1005)
T ss_pred cc-h-------HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHh
Confidence 11 1 2358999999998765 56677788888888777554444444444789999876 6666677777
Q ss_pred HHHHHHHhcCC
Q 009647 418 VAYVLGNLCVS 428 (530)
Q Consensus 418 A~~aL~nl~~~ 428 (530)
|-.+|..+...
T Consensus 680 ~~EcLra~Is~ 690 (1005)
T KOG2274|consen 680 ATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHhc
Confidence 77777766553
No 144
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.42 E-value=0.013 Score=47.25 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh--cCCChhHHHHHHHHHHHhcCCC
Q 009647 372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL--STSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 372 i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL--~~~~~~v~~eA~~aL~nl~~~~ 429 (530)
+|.....+|+|++..++.....+.+.|++|.+++.. ...+|-+++-|.|+|.|++.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 467788999999999988888899999999999886 4567889999999999999853
No 145
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=1.5 Score=49.70 Aligned_cols=231 Identities=13% Similarity=0.144 Sum_probs=129.3
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc-hhHHHHHhcCchH
Q 009647 232 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-VATSLLVKSGVLQ 310 (530)
Q Consensus 232 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~l~ 310 (530)
+.+..++.-+...|..++..+......+. ....+...|..-+++.+...+...+.||..|.+..+ +....+. . .++
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q-~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQ-RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HHH
Confidence 34788999999999999876321111100 112344445555556677788899999998887655 3333332 2 234
Q ss_pred HHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcc----hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647 311 LLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGIT----DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 311 ~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~----~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~ 386 (530)
-++-.+ +..+...+..|..+|-.|.. ++...+.|.... ..+++.+..-+-.....+....+.++..+...
T Consensus 742 EvIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 742 EVILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 333333 45566667777777776662 111122111000 12344444333333333333324455544432
Q ss_pred CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHH
Q 009647 387 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466 (530)
Q Consensus 387 ~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i 466 (530)
.......-.=.+++..+.-.|.+++.++++.|+..+.-++..- |. . +-.-....+++.+..+++.....+
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~------pe---~-~l~~~~~~LL~sll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF------PE---E-CLSPHLEELLPSLLALSHDHKIKV 885 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC------CH---H-HHhhhHHHHHHHHHHHHHhhhHHH
Confidence 1111111111234556666778999999999999999998742 31 1 111112236788888888777888
Q ss_pred HHHHHHHHHHHHccC
Q 009647 467 ARLGLQFMELVLRGM 481 (530)
Q Consensus 467 ~~~~L~~L~~il~~~ 481 (530)
+.++...|+.+++..
T Consensus 886 r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888887654
No 146
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=1.5 Score=47.21 Aligned_cols=291 Identities=12% Similarity=0.098 Sum_probs=152.4
Q ss_pred cCCHHHHHHHhc-CC----C-ChHHHHH-HHHHHHHHhc--CChhhHHhhcC--CcHHHHHhhcCCCCHHHHHHHHHHHH
Q 009647 136 AGAIPVLVQCLA-FG----S-PDEQLLE-AAWCLTNIAA--GKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALG 204 (530)
Q Consensus 136 ~g~v~~Lv~lL~-~~----~-~~~~~~e-A~~~L~nia~--~~~~~~~~i~~--~v~~L~~lL~~~~~~~v~~~a~~~L~ 204 (530)
.|+++.++..|. +. + +...|.| |.+.+.++.+ .......-+++ .++.++..+++ +.-=++.+|+..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s-~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRS-NYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcC-cccchHHHHHHHHH
Confidence 689999999994 21 1 1234555 7788888876 22222333332 56666666666 55568899999999
Q ss_pred hhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh---ccCCHHH
Q 009647 205 NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL---KRADEEL 281 (530)
Q Consensus 205 nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL---~~~d~~v 281 (530)
.+. .++++..+-..+.+....++++.+..+.-.|+-++.-+.++.... +.+ .+.+.+.+-++| +.-+.++
T Consensus 486 ~~e---eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h---~k~-sahVp~tmekLLsLSn~feiD~ 558 (970)
T COG5656 486 TIE---EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSH---EKF-SAHVPETMEKLLSLSNTFEIDP 558 (970)
T ss_pred HHH---HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhh---HHH-HhhhhHHHHHHHHhcccccchH
Confidence 984 456666676677788888888888889999999998887664221 122 223333333343 3333444
Q ss_pred HHHHHHHH-HHhhcCCchhHHHHHhcCchHHHHHHHhcC--CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhH
Q 009647 282 TTEVAWVV-VYLSALSNVATSLLVKSGVLQLLVERLATS--NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 358 (530)
Q Consensus 282 ~~~a~~~L-~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l 358 (530)
...+...+ .+.++.-......+. ..++...+++.... ++++.- ...++.+ +.. .|++
T Consensus 559 LS~vMe~fVe~fseELspfa~eLa-~~Lv~qFlkiaq~l~ens~d~~----------s~vDDKq---maa------sGiL 618 (970)
T COG5656 559 LSMVMESFVEYFSEELSPFAPELA-GSLVRQFLKIAQSLLENSSDTS----------SVVDDKQ---MAA------SGIL 618 (970)
T ss_pred HHHHHHHHHHHhHHhhchhHHHHH-HHHHHHHHHHHHHHHcCCcccc----------ccccHHH---HHH------HHHH
Confidence 44443332 222211000111110 01112111111100 000000 0001111 111 2566
Q ss_pred HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchh
Q 009647 359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKL 438 (530)
Q Consensus 359 ~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~ 438 (530)
..+..++-+-+. .+...+.+ .....|.+--+|.+.-.+.-.||+..|-+.+...
T Consensus 619 ~T~~smiLSlen----------------~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~s--------- 672 (970)
T COG5656 619 RTIESMILSLEN----------------RPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFMS--------- 672 (970)
T ss_pred HHHHHHHHhccc----------------chHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---------
Confidence 666555433211 11222222 2224555556677777888899998887765421
Q ss_pred HHHHHHHHHhcCChHHHHhhhccCCH-HHHHHHHHHHHHHHccCCC
Q 009647 439 IQEHLVSLVGRGCLSGFIDLVRSADI-EAARLGLQFMELVLRGMPN 483 (530)
Q Consensus 439 ~~~~~~~l~~~g~i~~L~~lL~~~d~-~i~~~~L~~L~~il~~~~~ 483 (530)
..+ .=+.-|+.+.+.+++...++ .-...+..++.|++..+.+
T Consensus 673 --keI-~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 673 --KEI-EPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred --HHh-hhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence 001 11233556666666666664 4456677889999887643
No 147
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.29 E-value=0.32 Score=53.18 Aligned_cols=274 Identities=15% Similarity=0.116 Sum_probs=149.6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcC
Q 009647 143 VQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG 221 (530)
Q Consensus 143 v~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g 221 (530)
+..+..+.++-++..|..+++-.++ ........ +.+..|+++... .+.++--..+-+|+..+.-+++... -.+.-
T Consensus 496 v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas~-~s~evl~llmE~Ls~vv~~dpef~a-s~~sk 571 (1005)
T KOG2274|consen 496 VNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLASK-SSDEVLVLLMEALSSVVKLDPEFAA-SMESK 571 (1005)
T ss_pred HHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHccc-ccHHHHHHHHHHHHHHhccChhhhh-hhhcc
Confidence 3344433434444556666666662 11222222 356666776665 5678888889999999987666543 33445
Q ss_pred ChhhhHhhcC--CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCC----HHHHHHHHHHHHHhhcC
Q 009647 222 ALPPLARMML--PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRAD----EELTTEVAWVVVYLSAL 295 (530)
Q Consensus 222 ~i~~L~~lL~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~L~~~ 295 (530)
+.|.++.+.. +.++.+...+--++-.|+....... .+ ....+|.+++.+..++ .....-++-.|..+.++
T Consensus 572 I~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g--~m--~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~ 647 (1005)
T KOG2274|consen 572 ICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG--PM--QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN 647 (1005)
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc--ch--HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc
Confidence 6666666543 4577776666666666665321111 12 3578999999998665 34455555555555554
Q ss_pred Cc-hhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcc-cCCCcchhhHHHHHHHhccCcH-hH
Q 009647 296 SN-VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV-PGHGITDQVIAVLVKCLKSEHR-VL 372 (530)
Q Consensus 296 ~~-~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~-~g~~~~~~~l~~L~~lL~~~~~-~i 372 (530)
.+ +-.+.++ .-++|.+.+....+++......+-.||..+...+.+|...--+ .|+. --.++.++.+||+.... ..
T Consensus 648 tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~-~~yImqV~sqLLdp~~sds~ 725 (1005)
T KOG2274|consen 648 TPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN-LWYIMQVLSQLLDPETSDSA 725 (1005)
T ss_pred CCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc-HHHHHHHHHHHcCCccchhH
Confidence 33 3333333 3467777777766677788888888888888776555433221 1210 01356677777764322 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHHHHHHHHhcC
Q 009647 373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA~~aL~nl~~ 427 (530)
-..+-..+..|+.+-......-++. ++..++.-| +-....+-..-+.+++.+..
T Consensus 726 a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQsLi~VfahL~~ 780 (1005)
T KOG2274|consen 726 AAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQSLIMVFAHLVH 780 (1005)
T ss_pred HHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 2233333344433322222221111 233333333 33445555666666666654
No 148
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.17 Score=54.00 Aligned_cols=157 Identities=12% Similarity=0.107 Sum_probs=104.2
Q ss_pred hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009647 224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSL 302 (530)
Q Consensus 224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~ 302 (530)
+.+-+++.+.++-++...++++.--..+.. ..+++..|++. .++.+.+|+..|.-+|+.++..+++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg---------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---- 588 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG---------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---- 588 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC---------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh----
Confidence 334456666777777777777654333321 23455556655 5567889999999999999875543
Q ss_pred HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN 382 (530)
Q Consensus 303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn 382 (530)
.++..|.+|..+-++.|+.-+..+||-.|.|+... .++..|-.+..+...-||+.|+.+++-
T Consensus 589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------------eAi~lLepl~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------------EAINLLEPLTSDPVDFVRQGALIALAM 650 (929)
T ss_pred -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------------HHHHHHhhhhcChHHHHHHHHHHHHHH
Confidence 36777888877789999999999999888877533 255556666677777899999999998
Q ss_pred HhcC-CHHHHHHHHhCCcHHHHHHHhcCCChh
Q 009647 383 IAAG-SVEHKQLIHSSEALALLLHLLSTSPFD 413 (530)
Q Consensus 383 l~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~ 413 (530)
|... ++..+..+ .++...+.+++.+...+
T Consensus 651 Im~Q~t~~~~pkv--~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 651 IMIQQTEQLCPKV--NGFRKQLEKVINDKHED 680 (929)
T ss_pred HHHhcccccCchH--HHHHHHHHHHhhhhhhH
Confidence 7643 32222111 13455566666544433
No 149
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.22 E-value=0.026 Score=61.33 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=109.0
Q ss_pred hchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHh--cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc
Q 009647 264 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS 341 (530)
Q Consensus 264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~--~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~ 341 (530)
..++|.|++.+...+......-.-+|+++..+-+. +.+.. ..++|.|++.| +-++..++..+++++.-+....+.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccc
Confidence 57889999999877777888888888888875443 22222 34677788877 578999999999999988876655
Q ss_pred ccchhcccCCCcchhhHHHHHHHhccCc---HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647 342 TISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 418 (530)
Q Consensus 342 ~~~~~i~~g~~~~~~~l~~L~~lL~~~~---~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA 418 (530)
....-++ .++|.+..+=.+.+ ..+|..|..++..|+..-|...-.-..-.++..|+..|.++...||++|
T Consensus 943 L~t~~~~-------Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen 943 LQTEHLS-------TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred cchHHHh-------HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHH
Confidence 4444443 48888888766655 4789999999999988433222222233477788888999999999999
Q ss_pred HHHH
Q 009647 419 AYVL 422 (530)
Q Consensus 419 ~~aL 422 (530)
+.+=
T Consensus 1016 v~tR 1019 (1030)
T KOG1967|consen 1016 VDTR 1019 (1030)
T ss_pred HHHh
Confidence 8763
No 150
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.21 E-value=0.013 Score=48.47 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=61.0
Q ss_pred hhhHHHHHHHh-ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 355 DQVIAVLVKCL-KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 355 ~~~l~~L~~lL-~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
..++..|+.+| .+.++.+..-||.=|+.++...|..+..+-+.|+=..++.++.+++++|+++|+.|+.-+.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35889999999 4557888899999999999988887777777899999999999999999999999987664
No 151
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.20 E-value=2.1 Score=45.18 Aligned_cols=283 Identities=19% Similarity=0.185 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhh
Q 009647 108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHL 187 (530)
Q Consensus 108 ~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL 187 (530)
...+..|+..+++.+...+-.++.. +....-.++....+++.+..+...|..+..++..... +.=..+...+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~---~~R~~fF~~I 75 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG---LMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH---HHHHHHHHHH
Confidence 4567778888888766544332221 3334445666555666655667777777755443111 0001233333
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCC---------------------------hhHHHH
Q 009647 188 GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK---------------------------GSTVRT 240 (530)
Q Consensus 188 ~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~---------------------------~~~~~~ 240 (530)
..+..++....-+-+|..+..++.+. ..++.++.|.|...+.... ......
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 44334443444455555555566554 2367778888877764210 111122
Q ss_pred HHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchH-----HHHH
Q 009647 241 AAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQ-----LLVE 314 (530)
Q Consensus 241 a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~-----~Lv~ 314 (530)
..-.+.|+.+........+. ..+.+..++.+-. ..+++....++..+ ..++..|.+| .++.
T Consensus 154 ll~~l~nviKfn~~~l~e~~--i~~lv~~i~~iC~~Ts~~~di~~~L~vl-----------daii~y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDE--ISSLVDQICTICKSTSSEDDIEACLSVL-----------DAIITYGDIPSESLSPCIE 220 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHH--HHHHHHHHHHHHhccCcHHHHHHHHHHH-----------HHHHHcCcCChHHHHHHHH
Confidence 22222233322111111111 1223333333221 11122222222222 2233333332 3444
Q ss_pred HHhc-CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc------CcHhHHHHHHHHHHHHhcCC
Q 009647 315 RLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS------EHRVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 315 lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~------~~~~i~~~A~~~Lsnl~~~~ 387 (530)
.|.. ++..+...++-+++.|++...-. ...+..|..+|.. .+..+.+.|...+..+..+.
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g-------------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLG-------------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccH-------------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 4431 23335667888888888854321 2366778888832 23467789999999988776
Q ss_pred HHHHHHHHhC---CcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 388 VEHKQLIHSS---EALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 388 ~~~~~~li~~---~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
.++...-+.. -++|.+...++.++..+-.+....+.++.
T Consensus 288 ~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 288 GEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 3322222222 27888999999888888888888888887
No 152
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.31 Score=52.48 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=46.3
Q ss_pred hHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
.+..+...+-=.+..+|.+|.-++.++.++++.... .+.-.|.+.+.+.+.++|..|..+|.++-
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 344444444445678899999999999866543222 23445667778899999999999999986
No 153
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.10 E-value=0.83 Score=50.79 Aligned_cols=249 Identities=17% Similarity=0.195 Sum_probs=151.2
Q ss_pred hhchHHHHHHHhcc-----CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh---cCCC----ccchhhhHH
Q 009647 263 VDGLLDAILRHLKR-----ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA---TSNS----LQLLIPVLR 330 (530)
Q Consensus 263 ~~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~---~~~~----~~v~~~al~ 330 (530)
+.|++..++.++.+ .+.+.....+..|.+++. -..+.+.+++.|+++.|+..|. ..+. ..+....+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 45777777777763 345677777888888886 5778888999999999988774 2323 456666777
Q ss_pred HHhhhhcCCccccchh----ccc-CC-CcchhhHHHHHHHhccC----cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcH
Q 009647 331 SLGNLVAGDSSTISDV----LVP-GH-GITDQVIAVLVKCLKSE----HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL 400 (530)
Q Consensus 331 ~L~nl~~~~~~~~~~~----i~~-g~-~~~~~~l~~L~~lL~~~----~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l 400 (530)
.+.-+........... ... |. .-...-+..|+..+.+. ++.+....+.+|.+++.|..+..+.++++ +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 7776665433211100 000 00 00123466666666554 57899999999999999999999998874 3
Q ss_pred HHHHHHhcCC---ChhHHHHHHHHHHHhcCCCCC-CCCCchhHHHHHHHHHhcCChHHHHhhhccCC--------HHHH-
Q 009647 401 ALLLHLLSTS---PFDIKKEVAYVLGNLCVSPTE-GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD--------IEAA- 467 (530)
Q Consensus 401 ~~Li~lL~~~---~~~v~~eA~~aL~nl~~~~~~-~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d--------~~i~- 467 (530)
.+.+++=..+ ..+- ...+.+++.++.+-.. ..| ..-...+++.|++...++.|...- ++..
T Consensus 272 ~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G-----~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~ 345 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNG-----NRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKE 345 (802)
T ss_pred HHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCch-----HHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHH
Confidence 4443422111 1111 1224455555543211 112 244567889999998888876532 2222
Q ss_pred -------HHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc-CCcHHHHHHHHHHHHhhcC
Q 009647 468 -------RLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF-HENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 468 -------~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~-~~~~~i~~~A~~il~~~f~ 523 (530)
..+|..|.-+.... ...+.....+++..|..|-. ....+|-..|..+|+.+=+
T Consensus 346 ~l~~psLp~iL~lL~GLa~gh---~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 346 FLSRPSLPYILRLLRGLARGH---EPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HhcCCcHHHHHHHHHHHHhcC---HHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 23555555554432 22344455677877777744 3477899999999986544
No 154
>PRK14707 hypothetical protein; Provisional
Probab=96.04 E-value=5.2 Score=48.32 Aligned_cols=385 Identities=15% Similarity=0.100 Sum_probs=216.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhc-CCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHH
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA-FGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPL 182 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~-~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~ 182 (530)
..+.....+|+..+..-+.... .+.++ ...--+..|+..++ ..++...+..+....+.++.++ .....+- .+|..
T Consensus 133 ~~~~~~c~~a~a~i~~~~~~~~-~~~~~-l~~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d-~~~~~~~~q~ia~ 209 (2710)
T PRK14707 133 NLDSGRCERAVARLARHLRRED-KARQT-LNAQNISLALNAFSKWSDNPDCQAVAPRFAALVASDD-RLRSAMDAQGVAT 209 (2710)
T ss_pred CCCchHHHHHHHHHHHHhcccc-chhhh-hccccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCh-hhhcccchHHHHH
Confidence 3455556666666655544332 22221 12234555666554 3444445444556666666654 3333333 37777
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHH-HhhcCCCCCchhhHH
Q 009647 183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS-NLIKGPDPKPATELI 261 (530)
Q Consensus 183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~v 261 (530)
++.-++..++..-..+|+..|.-...+....+..+-..|+-..|-.+-+=++....++++.++. .+... +.- +..+
T Consensus 210 ~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~--~~l-~~al 286 (2710)
T PRK14707 210 VLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD--PGL-RKAL 286 (2710)
T ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh--HHH-HHhc
Confidence 7887777665555566666665444434566666666665555555555567667777766665 45433 222 2222
Q ss_pred HhhchHHHHHHHhccCCHHHHHHHHHHHH-HhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647 262 KVDGLLDAILRHLKRADEELTTEVAWVVV-YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 340 (530)
Q Consensus 262 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 340 (530)
....+-..|-.+-+.+|..+-..++..|. .|.+ +.+..+.+ +.-.+...++.|.+=++..+...|..+|..=...++
T Consensus 287 ~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~ 364 (2710)
T PRK14707 287 DPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADP 364 (2710)
T ss_pred CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCH
Confidence 22333444445555777776666655554 4443 44444333 444566667777655666666666666655554554
Q ss_pred cccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647 341 STISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA 419 (530)
Q Consensus 341 ~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~ 419 (530)
...+.+ +..++...++-|+ =++..+...|+..|.-=..++.+..+.+-..|+-..|-.+-+.++..+...|+
T Consensus 365 ~l~~~l-------~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa 437 (2710)
T PRK14707 365 ELRKDL-------EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAV 437 (2710)
T ss_pred hhhccc-------chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHH
Confidence 444433 1234444455444 34555566666666555556667666665555444444444778989998888
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHH
Q 009647 420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM 499 (530)
Q Consensus 420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L 499 (530)
.+|.--..+. .+-++.|--.++...|-.+-+.+|..+...+.+.|..=+... ...++.+.-.+....|
T Consensus 438 ~~lA~~la~d----------~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~--~~l~~a~~~q~~~~~L 505 (2710)
T PRK14707 438 SALAGRLAHD----------TELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHE--RRLRKALKPQEVVIAL 505 (2710)
T ss_pred HHHHHHHhcc----------HHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccc--HHHHhhcCHHHHHHHH
Confidence 8886655432 133444444566666666777899998887777776544322 1234445555556667
Q ss_pred HHHhcCCcHHHHHHHHH
Q 009647 500 ERFQFHENEDLRNMANG 516 (530)
Q Consensus 500 ~~L~~~~~~~i~~~A~~ 516 (530)
.-|...++...+..|..
T Consensus 506 ~aLSK~Pd~~~c~~A~~ 522 (2710)
T PRK14707 506 HSLSKWPDTPICAEAAS 522 (2710)
T ss_pred HHhhcCCCcHHHHHHHH
Confidence 77788888777766543
No 155
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.02 E-value=0.11 Score=46.96 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=73.3
Q ss_pred cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647 369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448 (530)
Q Consensus 369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~ 448 (530)
++.||..++-+++.++...+..+.. .+|.+...|.++++.||+.|+.+|+++.... ++.-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---------------~ik~ 60 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILED---------------MIKV 60 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---------------ceee
Confidence 4689999999999998766554433 5788999999999999999999999997631 1222
Q ss_pred cCCh-HHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647 449 RGCL-SGFIDLVRSADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 449 ~g~i-~~L~~lL~~~d~~i~~~~L~~L~~il~~ 480 (530)
.|-+ ..++.+|..+|+++...|..++..+...
T Consensus 61 k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 61 KGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 2333 7788888999999999999999988765
No 156
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=1 Score=52.16 Aligned_cols=292 Identities=17% Similarity=0.139 Sum_probs=144.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHH-hc-CCCChHHHHH----HHHHHHHHhcC-
Q 009647 96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQC-LA-FGSPDEQLLE----AAWCLTNIAAG- 168 (530)
Q Consensus 96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~l-L~-~~~~~~~~~e----A~~~L~nia~~- 168 (530)
+..++..+.+..--++..++-+|+.++...+. +.+++ -+|.+-.. ++ .||-.+-.++ ++.+|+.++-.
T Consensus 1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~---~~~~e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPF---DQVKE--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHcCCCh---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456666777788999999999999876433 44443 23333322 22 1233344454 45566666521
Q ss_pred ----ChhhHHhhc-CCcHHHHH--hhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHH-H
Q 009647 169 ----KQEETKALL-PALPLLIA--HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVR-T 240 (530)
Q Consensus 169 ----~~~~~~~i~-~~v~~L~~--lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~-~ 240 (530)
+....+.++ .++|.|+. .+ + .-.+++.-++.++..++..++..-.- .-...||.|+.....-.+.+.- .
T Consensus 1116 ~d~~~~~~~~~~l~~iLPfLl~~gim-s-~v~evr~~si~tl~dl~Kssg~~lkP-~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDEGIM-S-KVNEVRRFSIGTLMDLAKSSGKELKP-HFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred cccCCcccHHHHHHHHHHHHhccCcc-c-chHHHHHHHHHHHHHHHHhchhhhcc-hhhHHHHHHHHHccccchHHHHHH
Confidence 111122233 35666663 23 2 56899999999999998754331100 0112455555555433322222 1
Q ss_pred HHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc-----hhHHHHH-----h-----
Q 009647 241 AAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-----VATSLLV-----K----- 305 (530)
Q Consensus 241 a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-----~~~~~i~-----~----- 305 (530)
++.+ .|.-...-...........+...++-.++.+-|..+.++..--+..+.+++- ..+..++ .
T Consensus 1193 s~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em 1271 (1702)
T KOG0915|consen 1193 SLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM 1271 (1702)
T ss_pred HHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc
Confidence 1111 1111100000000111223444555555555565655555555555554321 0011110 0
Q ss_pred cCchHHHHHHHh---cCCCccchhhhHHHHhhhhcCCcc-ccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHH
Q 009647 306 SGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS 381 (530)
Q Consensus 306 ~g~l~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Ls 381 (530)
......|+..+. +..++.++.....+.|.++..+.+ +.+. .+..++..+.-+.+..++-+|.+++
T Consensus 1272 tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qK-----------Lie~~l~~~l~k~es~~siscatis 1340 (1702)
T KOG0915|consen 1272 TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQK-----------LIETLLADLLGKDESLKSISCATIS 1340 (1702)
T ss_pred CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHH-----------HHHHHHHHHhccCCCccchhHHHHH
Confidence 011122222221 345677777777888888755433 5443 4445555554455556688999999
Q ss_pred HHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647 382 NIAAGSVEHKQLIHSSEALALLLHLLST 409 (530)
Q Consensus 382 nl~~~~~~~~~~li~~~~l~~Li~lL~~ 409 (530)
||+....+...-..+ .+-||+-+-.+
T Consensus 1341 ~Ian~s~e~Lkn~as--aILPLiFLa~~ 1366 (1702)
T KOG0915|consen 1341 NIANYSQEMLKNYAS--AILPLIFLAMH 1366 (1702)
T ss_pred HHHHhhHHHHHhhHH--HHHHHHHHHHh
Confidence 987666554433322 34444444433
No 157
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.01 E-value=0.28 Score=42.95 Aligned_cols=122 Identities=18% Similarity=0.250 Sum_probs=93.2
Q ss_pred HHHHhcCchHHHHHHHhcCCC-----ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHH
Q 009647 301 SLLVKSGVLQLLVERLATSNS-----LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLK 373 (530)
Q Consensus 301 ~~i~~~g~l~~Lv~lL~~~~~-----~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~ 373 (530)
..++..|++..|+.++.+... .+++..+|.++..+..+....- ..+ ...++..++..+... +..+.
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l------~~~FI~Kia~~Vn~~~~d~~i~ 77 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTL------SDSFIKKIASYVNSSAMDASIL 77 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhc------cHHHHHHHHHHHccccccchHH
Confidence 457788999999998864332 3566778889988887653222 233 346888888888754 57899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647 374 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 374 ~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 429 (530)
..|...|-+++..++...+.+-+.=-++.|+..|+.++.+++..|...+-.+...+
T Consensus 78 q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 78 QRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999988665665555545999999999999999999998887777654
No 158
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.94 E-value=0.019 Score=47.53 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=58.5
Q ss_pred CChHHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647 450 GCLSGFIDLV-RSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 450 g~i~~L~~lL-~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f 522 (530)
.++..|+++| .+.|+.++.+|+.=|..+.+..|. .+..+++.|+-+.+-.|..|+|++|+..|...++++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~--gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN--GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG--GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh--HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3578899999 456788888888888888887765 6788899999999999999999999999988887764
No 159
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.94 E-value=0.051 Score=59.18 Aligned_cols=187 Identities=19% Similarity=0.200 Sum_probs=125.8
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHH--------HH----hcCChhhhHhhcCCCChhHHHHHHHHHHH
Q 009647 180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV--------LL----SQGALPPLARMMLPNKGSTVRTAAWALSN 247 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~--------~~----~~g~i~~L~~lL~~~~~~~~~~a~~~L~n 247 (530)
...|+.+|+. +++-..++.++.-+..|++..+.. +. -..++|.|++.+...+...+.+..-+|++
T Consensus 817 a~klld~Ls~---~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSG---PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCC---ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 3345555543 455566777777777776543321 11 23578999998887677788888888998
Q ss_pred hhcCCCCCchhhHHH--hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC---c
Q 009647 248 LIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS---L 322 (530)
Q Consensus 248 L~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~---~ 322 (530)
...+ -|++ .+. ....+|.|++.|.-+|..++..+..++.-+....+.-...-+ .-++|.++.+= .+++ .
T Consensus 894 Vl~~-vP~~---vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls-~~~~n~~~ 967 (1030)
T KOG1967|consen 894 VLTN-VPKQ---VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLS-SDNDNNMM 967 (1030)
T ss_pred HHhc-CCHH---hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcC-CCCCcchh
Confidence 8754 3432 221 246788888889999999999999999888764432222222 23566666543 2333 4
Q ss_pred cchhhhHHHHhhhhcCCcc-ccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647 323 QLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN 382 (530)
Q Consensus 323 ~v~~~al~~L~nl~~~~~~-~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn 382 (530)
.++..|+.+|+.+...-+. ..... ...++..|.+.|.+++.-||++|..+=.+
T Consensus 968 ~VR~~ALqcL~aL~~~~P~~~l~~f-------r~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 968 VVREDALQCLNALTRRLPTKSLLSF-------RPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHHHHhccCCCcccccc-------cHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 5788999999999974433 22222 34689999999999999999999876444
No 160
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.71 E-value=0.54 Score=46.58 Aligned_cols=188 Identities=19% Similarity=0.197 Sum_probs=110.9
Q ss_pred hHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCCHHHHHHHHHHHHHhhc--CCchhHH
Q 009647 226 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSA--LSNVATS 301 (530)
Q Consensus 226 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--~~~~~~~ 301 (530)
.+..+.......+..++-.+.++...+ ...+.+. ...+++.+.+.++.+..+-+.-|+.++.-++- +..+...
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 334444556788899999998887654 2233432 23567778888887765555555555555543 3333344
Q ss_pred HHHhcCchHHHHHHHhcCC-CccchhhhHHHHhhhhcC---CccccchhcccCCCcchhhHHHHHH--Hhcc--------
Q 009647 302 LLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAG---DSSTISDVLVPGHGITDQVIAVLVK--CLKS-------- 367 (530)
Q Consensus 302 ~i~~~g~l~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~---~~~~~~~~i~~g~~~~~~~l~~L~~--lL~~-------- 367 (530)
.+++ .+.|.|...+.+.. .+.++..++.+||-++.. +...+...+ ..+..+.. ....
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--------~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--------ESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--------HHHHHHHHHHhcCcCCCccccc
Confidence 4544 46777877775332 344556677777766542 222222111 13332211 1211
Q ss_pred --CcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 368 --EHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 368 --~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
+++.+...|+.+.+-|... +...+....+ ..+|.|..+|.+.+.+||..|..+|.-+.
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1245777777666666544 3333444433 36899999999999999999999987774
No 161
>PRK14707 hypothetical protein; Provisional
Probab=95.70 E-value=7.2 Score=47.24 Aligned_cols=390 Identities=14% Similarity=0.082 Sum_probs=214.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHh-cCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHH
Q 009647 106 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL-AFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLL 183 (530)
Q Consensus 106 ~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL-~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L 183 (530)
++......++..|...++.++ ...+ -.+...|-.++.-+ +.++++.. ..|+..|.....+.......+- ..|...
T Consensus 176 ~~~~~c~~aa~~la~~~~~~d-~~~~-~~~~q~ia~~lNa~sKWp~~~~c-~~aa~~la~~l~~~~~l~~~~~~q~va~~ 252 (2710)
T PRK14707 176 SDNPDCQAVAPRFAALVASDD-RLRS-AMDAQGVATVLNALCKWPDTPDC-GNAVSALAERLADESRLRNELKPQELGNA 252 (2710)
T ss_pred CCCchHHHHHHHHHHHhcCCh-hhhc-ccchHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHcCcHHHHHhCChHHHHHH
Confidence 344456667777777766554 2222 23444455555544 45665554 3455666555555454444443 367777
Q ss_pred HHhhcCCCCHHHHHHHHHHHH-hhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHH-hhcCCCCCchhhHH
Q 009647 184 IAHLGEKSSSPVAEQCAWALG-NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN-LIKGPDPKPATELI 261 (530)
Q Consensus 184 ~~lL~~~~~~~v~~~a~~~L~-nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~n-L~~~~~~~~~~~~v 261 (530)
+.-|+..++..+..+++-+|. .++ +.+..++.+-..++-..|-.+-+-++..+.+.++-.|.. |.. ++.-.. .+
T Consensus 253 lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~--d~~l~~-~~ 328 (2710)
T PRK14707 253 LNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD--DPELCK-AL 328 (2710)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc--cHhhhh-cc
Confidence 888877777767777665554 555 456677666665555555555556788888888777764 443 233222 12
Q ss_pred HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc
Q 009647 262 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS 341 (530)
Q Consensus 262 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~ 341 (530)
...++-..|-.+-+.+|..+-..++.+|..=...+++..+.+ +...+..+++.|.+=++..+...|..+|..=..++.+
T Consensus 329 ~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~ 407 (2710)
T PRK14707 329 NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLE 407 (2710)
T ss_pred chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChh
Confidence 122333334444456666555555555543333355444444 3445666666675556666665566666555545444
Q ss_pred ccchhcccCCCcchhhHHHHHHHh-ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHH
Q 009647 342 TISDVLVPGHGITDQVIAVLVKCL-KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAY 420 (530)
Q Consensus 342 ~~~~~i~~g~~~~~~~l~~L~~lL-~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~ 420 (530)
.... ++ ...+.-.+.-| +=++..+...++..|.--.+++.+.++.+--.++...|--+-+.++..+..+|+.
T Consensus 408 l~~~-~~------~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~ 480 (2710)
T PRK14707 408 LRKG-LD------PQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTAS 480 (2710)
T ss_pred hhhh-cc------hhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHH
Confidence 3332 22 23444444444 4456677777777777766777777766654454444444446788888888888
Q ss_pred HHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHH
Q 009647 421 VLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAME 500 (530)
Q Consensus 421 aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~ 500 (530)
+|.-=.... .+.++.|--.++...|-.+-+.+|......++..|.-=+-. .......|..-+....+.
T Consensus 481 ~La~~l~~~----------~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~--~~~l~~~~~~~~~~~~ln 548 (2710)
T PRK14707 481 ALAARLAHE----------RRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD--ELQLRKAFDAHQVVNTLK 548 (2710)
T ss_pred HHHHHhccc----------HHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHH
Confidence 775544321 13344454556666677777777776555544443322211 111223333333334455
Q ss_pred HHhcCCcHHHHHHHHHHHHhhc
Q 009647 501 RFQFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 501 ~L~~~~~~~i~~~A~~il~~~f 522 (530)
-|.++++....+.|..-|...+
T Consensus 549 alSKwp~s~~C~~A~~~iA~~l 570 (2710)
T PRK14707 549 ALSKWPDKQLCAVAASGLAERL 570 (2710)
T ss_pred hhhcCCchhHHHHHHHHHHHHh
Confidence 5677777666666654444443
No 162
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.69 E-value=0.078 Score=59.32 Aligned_cols=159 Identities=24% Similarity=0.237 Sum_probs=117.9
Q ss_pred CCHHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchh
Q 009647 137 GAIPVLVQCLAF---GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF 213 (530)
Q Consensus 137 g~v~~Lv~lL~~---~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~ 213 (530)
...|.+++..+. .++|++|..|.-+|..+..-+.+-.. ...|.|+..|..++++.||.+++-++|-++.-.|..
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce---s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE---SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 355666666642 24478988899999998865543322 478999999997799999999999999988644432
Q ss_pred HHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009647 214 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 293 (530)
Q Consensus 214 r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 293 (530)
- ...-+.|-+-|.++++.++++|..+|++|.-. +++...|.++-+..+|.+++++|..-|=..+..|+
T Consensus 996 i-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-------dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 996 I-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILN-------DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred c-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-------hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 2 12334466667788999999999999999854 26668899999999999999999888887888887
Q ss_pred cCCchhHHHHHhcCchHHHHHHH
Q 009647 294 ALSNVATSLLVKSGVLQLLVERL 316 (530)
Q Consensus 294 ~~~~~~~~~i~~~g~l~~Lv~lL 316 (530)
...+ .++ +++|-++..|
T Consensus 1064 ~k~n----~iy--nlLPdil~~L 1080 (1251)
T KOG0414|consen 1064 SKGN----TIY--NLLPDILSRL 1080 (1251)
T ss_pred hccc----chh--hhchHHHHhh
Confidence 6432 122 3566666655
No 163
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.71 Score=49.64 Aligned_cols=253 Identities=15% Similarity=0.126 Sum_probs=151.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647 94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 173 (530)
Q Consensus 94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~ 173 (530)
.-+-+.+..+.+=+...|+.-+.-+|+.. . .+|. .++..+.-+..+|.+.+ +.+.+||+..|.+++....
T Consensus 206 ~Yl~~~idqi~~~~~~LqlViVE~Irkv~-~-~~p~----~~~~~i~~i~~lL~sts-saV~fEaa~tlv~lS~~p~--- 275 (948)
T KOG1058|consen 206 NYLLSNIDQIPSFNDSLQLVIVELIRKVC-L-ANPA----EKARYIRCIYNLLSSTS-SAVIFEAAGTLVTLSNDPT--- 275 (948)
T ss_pred HHHHhhHhhccCccHHHHHHHHHHHHHHH-h-cCHH----HhhHHHHHHHHHHhcCC-chhhhhhcceEEEccCCHH---
Confidence 33444444444555666776677777763 2 2332 23445677888998875 6678999999999986533
Q ss_pred HhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 174 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 174 ~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
++..+...++.++-..++-.++--..--|.-+.... + -+-.|.+--++++|.+++.++++.+.-...-|....+
T Consensus 276 -alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~---~--~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 276 -ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALH---E--KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN 349 (948)
T ss_pred -HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhh---H--HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence 222355666666654344444444444444433211 1 1223456678889999999999999888877876542
Q ss_pred CCchhhHHHhhchHHHHHHHh-cc------CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchh
Q 009647 254 PKPATELIKVDGLLDAILRHL-KR------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI 326 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL-~~------~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~ 326 (530)
- ..++..|-+=+ .. ++.+.+.....++++.+-..++.. +.+++.|++.+. +.++....
T Consensus 350 v---------ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fis-D~N~~aas 414 (948)
T KOG1058|consen 350 V---------EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFIS-DSNEAAAS 414 (948)
T ss_pred H---------HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhc-cCCHHHHH
Confidence 1 12233332222 11 123567788888999987666553 456889999984 55555555
Q ss_pred hhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHHHHhcCCH
Q 009647 327 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSV 388 (530)
Q Consensus 327 ~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~ 388 (530)
..+..+.......+... ..++..|+.-+.. ....+-..|+|.++.-+.+..
T Consensus 415 ~vl~FvrE~iek~p~Lr-----------~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 415 DVLMFVREAIEKFPNLR-----------ASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHHHhCchHH-----------HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 56666665554333222 2344555544432 344678899999999887754
No 164
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.65 E-value=0.16 Score=48.23 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHHh
Q 009647 415 KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVERE 493 (530)
Q Consensus 415 ~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ 493 (530)
...|+.+|--+|--. | .....+.+...+..|+++|. ...+.+...+|.+|..++...+ .+.+.||++
T Consensus 108 i~~aL~vLQGl~LLH------p----~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p--~N~r~FE~~ 175 (257)
T PF08045_consen 108 IALALRVLQGLCLLH------P----PSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSP--ENQRDFEEL 175 (257)
T ss_pred HHHHHHHHHHHHHcC------c----hHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcCh--HHHHHHHHh
Confidence 344556665555422 1 22456668899999999995 4678899999999999886543 367899999
Q ss_pred chHHHHHHHhcCC--cHHHHHHHHHHHHhhcCCCCC
Q 009647 494 DGIDAMERFQFHE--NEDLRNMANGLVDKYFGEDYG 527 (530)
Q Consensus 494 ggl~~L~~L~~~~--~~~i~~~A~~il~~~f~~~~~ 527 (530)
+|+..+..+..+. +++++-++.+.|--|..++..
T Consensus 176 ~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~ 211 (257)
T PF08045_consen 176 NGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETP 211 (257)
T ss_pred CCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCC
Confidence 9999999887655 789999999999999888764
No 165
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.64 E-value=0.98 Score=46.10 Aligned_cols=224 Identities=18% Similarity=0.192 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcH--HHHHHcCCHHHHHHHhcCC-----CChHHHHH-HHHHHHHHhcCChhh-HHh
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPI--ETALKAGAIPVLVQCLAFG-----SPDEQLLE-AAWCLTNIAAGKQEE-TKA 175 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~--~~ii~~g~v~~Lv~lL~~~-----~~~~~~~e-A~~~L~nia~~~~~~-~~~ 175 (530)
..+.+.++.|+-...|+...++-... ..+.++=+.+.+=++|.+. .++.+-+. +...|+.+|+...-. ...
T Consensus 22 ~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~ 101 (698)
T KOG2611|consen 22 GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEE 101 (698)
T ss_pred ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHH
Confidence 55667899999999998765542222 3477777888888888642 23334333 778888888764322 234
Q ss_pred hcCCcHHHHHhhcCCCCHH------HHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHH-HHHHHHHHh
Q 009647 176 LLPALPLLIAHLGEKSSSP------VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVR-TAAWALSNL 248 (530)
Q Consensus 176 i~~~v~~L~~lL~~~~~~~------v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~-~a~~~L~nL 248 (530)
+++.||.|+.+++...+++ +.+.|..+|..+++. +.....++..|+++.+.+.-.-++-..-. -+...+--+
T Consensus 102 ~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~ 180 (698)
T KOG2611|consen 102 MVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLL 180 (698)
T ss_pred HHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 5589999999998755554 888999999999985 77888999999999999766543221111 111111111
Q ss_pred hcC--CCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc------hhH----HHHHhcCchHHHHHHH
Q 009647 249 IKG--PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN------VAT----SLLVKSGVLQLLVERL 316 (530)
Q Consensus 249 ~~~--~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~------~~~----~~i~~~g~l~~Lv~lL 316 (530)
... .-+.....+ ...+..+..=+...+....-+.|..|..+..... .-. ..-...| ++..|
T Consensus 181 ~~~~~cw~e~~~~f---lali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G----~~~IL 253 (698)
T KOG2611|consen 181 VSKLDCWSETIERF---LALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG----VVAIL 253 (698)
T ss_pred HHhcccCcCCHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH----HHHHH
Confidence 111 001111111 1223333333344455667777887774432111 000 0111233 33444
Q ss_pred hcCCCccchhhhHHHHhhhh
Q 009647 317 ATSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 317 ~~~~~~~v~~~al~~L~nl~ 336 (530)
...-.+.-+.||+....|+.
T Consensus 254 ~~kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 254 QNKVAPSQRLPALILAANMM 273 (698)
T ss_pred hcccCchhcChHHHHHHHHH
Confidence 33335566678888777775
No 166
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.62 E-value=1.5 Score=46.49 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC
Q 009647 152 DEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 231 (530)
Q Consensus 152 ~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~ 231 (530)
...+.-|+..+..+...-++.... ++..++.|..+ .+..||.+|+..|-.+|.+.++....+ ...|+++|+
T Consensus 36 ~k~K~Laaq~I~kffk~FP~l~~~---Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~ 106 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPDLQEE---AINAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GGGHHH---HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhChhhHHH---HHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHh
Confidence 334444666666666555544333 55666666666 789999999999999999877665544 468999999
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc---cCCHHHHHHHHHHHH
Q 009647 232 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK---RADEELTTEVAWVVV 290 (530)
Q Consensus 232 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~ 290 (530)
++++.-+..+-++|..|.+.+ | .+.+..+...+. ..|+.+++.++..|.
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d-~---------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQD-P---------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcC-c---------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 999888888899998888643 1 244555555554 667788888876653
No 167
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.62 E-value=0.02 Score=35.27 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.9
Q ss_pred hHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385 (530)
Q Consensus 357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~ 385 (530)
++|.+.++++++++.||..|+++|++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999875
No 168
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.58 E-value=0.018 Score=35.54 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=25.0
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhhcC
Q 009647 180 LPLLIAHLGEKSSSPVAEQCAWALGNVAG 208 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~ 208 (530)
+|.+++++++ ++++||..|+++|++++.
T Consensus 2 lp~l~~~l~D-~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLND-PSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHHHh
Confidence 6899999998 899999999999999875
No 169
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.19 Score=52.10 Aligned_cols=152 Identities=12% Similarity=0.183 Sum_probs=106.3
Q ss_pred hHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCCHHHHHHHHHHHHHhhcCCchhHHHHH
Q 009647 226 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLV 304 (530)
Q Consensus 226 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~ 304 (530)
+-.++.+.++-++.+.++++..-..+.. ..+++..+++. .++.+.+|+..|..+|+.+|..+.
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg---------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------- 584 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG---------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------- 584 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC---------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc-------
Confidence 3455666677777777777765433421 23566666666 667788999999999999997433
Q ss_pred hcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHh
Q 009647 305 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384 (530)
Q Consensus 305 ~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~ 384 (530)
..++..+++|..+-++.++.-..-+||-.+.+...+ -++..|-.++.+...-||..||.+++-|.
T Consensus 585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------------VATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------------HHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 456777888877778899998899999888876543 26667777888888899999999999886
Q ss_pred cC-CHHHHHHHHhCCcHHHHHHHhcCC
Q 009647 385 AG-SVEHKQLIHSSEALALLLHLLSTS 410 (530)
Q Consensus 385 ~~-~~~~~~~li~~~~l~~Li~lL~~~ 410 (530)
.. +++....+ .+++..+.+++.+.
T Consensus 650 ~Q~n~~Lnp~v--~~I~k~f~~vI~~K 674 (926)
T COG5116 650 MQCNPELNPNV--KRIIKKFNRVIVDK 674 (926)
T ss_pred hhcCcccChhH--HHHHHHHHHHHhhh
Confidence 53 33221111 13555666666443
No 170
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.56 E-value=0.28 Score=42.96 Aligned_cols=123 Identities=10% Similarity=0.111 Sum_probs=92.8
Q ss_pred HHHHHHcCCHHHHHHHhcCCCC-----hHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCC-CHHHHHHHHHH
Q 009647 130 IETALKAGAIPVLVQCLAFGSP-----DEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKS-SSPVAEQCAWA 202 (530)
Q Consensus 130 ~~~ii~~g~v~~Lv~lL~~~~~-----~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~-~~~v~~~a~~~ 202 (530)
..+++..|+++.|+..+..+.. .+....+..++.++-.+..-.-+.+- ..|...+.+...+. +..+...|+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4678999999999999987653 23434467777777654321222222 25666777776543 68999999999
Q ss_pred HHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647 203 LGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 252 (530)
Q Consensus 203 L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 252 (530)
|-++...++.....+.+.=-++.|+.+|+.+++.++.++.-.+-.|....
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99999988887888888888999999999999999999998888777654
No 171
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=2.2 Score=48.38 Aligned_cols=240 Identities=13% Similarity=0.061 Sum_probs=137.0
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc----CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHH
Q 009647 143 VQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL----PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVL 217 (530)
Q Consensus 143 v~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~----~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~ 217 (530)
+....+.+...+|..+...|..++...+ ....+. ..-..|..-+++ .....+...+.+|..|-...+ +..+.+
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~~s-~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSSPS-GEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3334444457788999999999997732 211111 234444444444 344566666777776665433 333333
Q ss_pred HhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc--C---CCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009647 218 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIK--G---PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL 292 (530)
Q Consensus 218 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~--~---~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L 292 (530)
. .-+...++.+ +..+...++++.-+|..++. . ....+..+. ...+++.|...+-.+...+....+-++..+
T Consensus 737 ~-k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~--lnefl~~Isagl~gd~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 737 P-KLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAI--LNEFLSIISAGLVGDSTRVVASDIVAITHI 812 (1176)
T ss_pred H-HHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHH--HHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 2 2233334444 77788999999999988882 1 111121222 235555555444333322332224555555
Q ss_pred hcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcccc-chhcccCCCcchhhHHHHHHHhccCcHh
Q 009647 293 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI-SDVLVPGHGITDQVIAVLVKCLKSEHRV 371 (530)
Q Consensus 293 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~-~~~i~~g~~~~~~~l~~L~~lL~~~~~~ 371 (530)
............-.+++..+.-+| .++++++...|++.+.-+++.-++.. .... ..++|.+..+++.....
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-------~~LL~sll~ls~d~k~~ 884 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEECLSPHL-------EELLPSLLALSHDHKIK 884 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-------HHHHHHHHHHHHhhhHH
Confidence 432222222112233445555566 47899999999999999998766532 2222 34888888888777788
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHh
Q 009647 372 LKKEAAWVLSNIAAG-SVEHKQLIHS 396 (530)
Q Consensus 372 i~~~A~~~Lsnl~~~-~~~~~~~li~ 396 (530)
+|+.+-..+--++.. +.+.++.++.
T Consensus 885 ~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 885 VRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 888888888877653 3455555544
No 172
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.50 E-value=0.11 Score=45.99 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=102.3
Q ss_pred hHHHHHHHhc-CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC
Q 009647 309 LQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 309 l~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~ 387 (530)
+..++..|.. ...++++..++-++..+. +......- ..+-+.+..++...+.+-...++.+++.+--+.
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~-------~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~ 74 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFK-------EKISDFIESLLDEGEMDSLIIAFSALTALFPGP 74 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHH-------HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHH-------HHHHHHHHHHHccccchhHHHHHHHHHHHhCCC
Confidence 4455555643 457788888888888884 11111111 224445555565555567788999999998888
Q ss_pred HHHHHHHH-hCCcHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc-CC
Q 009647 388 VEHKQLIH-SSEALALLLHLLS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-AD 463 (530)
Q Consensus 388 ~~~~~~li-~~~~l~~Li~lL~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d 463 (530)
++....++ ..|+++.++.++. ..+..++..++.+|...|.. +.++..+...+++-|-++++. +|
T Consensus 75 ~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d------------~~~r~~I~~~~~~~L~~~~~~~~~ 142 (157)
T PF11701_consen 75 PDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID------------KSCRTFISKNYVSWLKELYKNSKD 142 (157)
T ss_dssp HHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS------------HHHHHCCHHHCHHHHHHHTTTCC-
T ss_pred HHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc------------HHHHHHHHHHHHHHHHHHHccccc
Confidence 88888877 5688999999998 78889999999999888763 567888888899999999964 44
Q ss_pred HH-HHHHHHHHHH
Q 009647 464 IE-AARLGLQFME 475 (530)
Q Consensus 464 ~~-i~~~~L~~L~ 475 (530)
.. +...++-+|.
T Consensus 143 ~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 143 DSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 54 5555555443
No 173
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.49 E-value=0.19 Score=54.21 Aligned_cols=218 Identities=16% Similarity=0.128 Sum_probs=146.7
Q ss_pred HHHHHHHHHh-hcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHH-HhhcCCCCCchhhHHHhhchHHHHHHH
Q 009647 196 AEQCAWALGN-VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS-NLIKGPDPKPATELIKVDGLLDAILRH 273 (530)
Q Consensus 196 ~~~a~~~L~n-la~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~v~~~~~l~~L~~l 273 (530)
-.+.-|..-- ++....+-|...+..|+...|+++..............+|. .+.. . ... ....++.+.+.
T Consensus 478 akt~~~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~-~~~------~~~v~~~~~s~ 549 (748)
T KOG4151|consen 478 AKTVSWAKNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-P-GER------SYEVVKPLDSA 549 (748)
T ss_pred HHHHHHHHHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-C-CCc------hhhhhhhhcch
Confidence 3333354332 33334566777888999999999988777777777777776 2211 1 011 23556666666
Q ss_pred hccCCH-HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCC
Q 009647 274 LKRADE-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG 352 (530)
Q Consensus 274 L~~~d~-~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~ 352 (530)
++.... --.-+++-++.||+..++...+.++..-.++.+-+++ ...++..+..++..+.|+.-++.-....+.+.
T Consensus 550 ~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~--- 625 (748)
T KOG4151|consen 550 LHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEY--- 625 (748)
T ss_pred hhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhcc---
Confidence 654322 1245678888999986666666677776777766666 36788889999999999998876655555542
Q ss_pred cchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHH-HHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 353 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL-IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 353 ~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~-li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
...++.....+.........+++.++.-|+.-...++.. .--......++.++.+++..+|...+..+.|+..
T Consensus 626 --~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 626 --KDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred --ccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 345666666666666677777777777777665555553 2223567888899999999999999999999643
No 174
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.38 E-value=1.6 Score=44.64 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHhhc-C-CCCCchhhHHHhhchHHHHHHHhccC---CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchH
Q 009647 236 STVRTAAWALSNLIK-G-PDPKPATELIKVDGLLDAILRHLKRA---DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQ 310 (530)
Q Consensus 236 ~~~~~a~~~L~nL~~-~-~~~~~~~~~v~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~ 310 (530)
.+.+....++..+.. + ......+..+.....+..|..++.+. .+.+...|+..+..+..+++.....+.+.|+.+
T Consensus 75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~ 154 (379)
T PF06025_consen 75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID 154 (379)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence 455666667777766 2 22223333332145566666777655 368899999999999998888999999999999
Q ss_pred HHHHHHh-cC--CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcH--hHHH-HHHHHHH---
Q 009647 311 LLVERLA-TS--NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR--VLKK-EAAWVLS--- 381 (530)
Q Consensus 311 ~Lv~lL~-~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~--~i~~-~A~~~Ls--- 381 (530)
.+++.+. .. ++.+++...-.+|+.||-.+.. .+.+.+ .+.++.++.++.+++. .++. +.+..++
T Consensus 155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~G-l~~~~~------~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~ 227 (379)
T PF06025_consen 155 AFLDAITAKGILPSSEVLTSLPNVLSAICLNNRG-LEKVKS------SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSF 227 (379)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHH-HHHHHh------cChHHHHHHHhCCHHHHHHhcccchHHHHHHHH
Confidence 9999885 11 3445555555666777655433 334443 4688888888877643 1222 4444444
Q ss_pred -HHhcCCHHHHHHHHh
Q 009647 382 -NIAAGSVEHKQLIHS 396 (530)
Q Consensus 382 -nl~~~~~~~~~~li~ 396 (530)
.|.++.+.....+++
T Consensus 228 DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 228 DELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHccCHHHHHHHHH
Confidence 355666665555544
No 175
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.13 E-value=0.081 Score=39.84 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcC
Q 009647 156 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG 221 (530)
Q Consensus 156 ~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g 221 (530)
+.|.|++.++++... ....+. +.++.++++..+++...+|-.|.++|+-|+. ..+..+.+.+.|
T Consensus 5 KaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 5 KAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 569999999998654 333333 6999999999888889999999999999997 667777776665
No 176
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=6.3 Score=42.96 Aligned_cols=284 Identities=12% Similarity=0.102 Sum_probs=155.7
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
..|.+=..|.+ ...-+...|+.++.++..-.+ |.. ..++..|-.++.++...++-.|..+|..++... |.
T Consensus 246 ~~~fl~s~l~~-K~emV~~EaArai~~l~~~~~--r~l---~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~-P~--- 315 (865)
T KOG1078|consen 246 LFPFLESCLRH-KSEMVIYEAARAIVSLPNTNS--REL---APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH-PQ--- 315 (865)
T ss_pred HHHHHHHHHhc-hhHHHHHHHHHHHhhccccCH--hhc---chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC-Cc---
Confidence 34444445554 567788899999988876432 211 126667777788889999999999999998643 32
Q ss_pred hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
.+ ...=+-|-.++.+.+..+-.-|..+|. ..|.+..+..+... +...+.-+ +..-.-+...|+++|++....
T Consensus 316 -~v--~~cN~elE~lItd~NrsIat~AITtLL--KTG~e~sv~rLm~q--I~~fv~di-sDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 316 -AV--TVCNLDLESLITDSNRSIATLAITTLL--KTGTESSVDRLMKQ--ISSFVSDI-SDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred -cc--cccchhHHhhhcccccchhHHHHHHHH--HhcchhHHHHHHHH--HHHHHHhc-cccceEEeHHHHHHHHhhccH
Confidence 11 122233455566666556555555442 23455555544332 22223222 122223345677777665421
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e 417 (530)
. ..+.+..|..+|.. +-.+.++...-++..++...++.... ++..|...+.+-. ...-
T Consensus 388 k--------------~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce--~~~i 446 (865)
T KOG1078|consen 388 K--------------HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCE--FTQI 446 (865)
T ss_pred H--------------HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhcc--chHH
Confidence 1 12466777777754 33467777788888777655544332 3445555554433 2334
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHH
Q 009647 418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID 497 (530)
Q Consensus 418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~ 497 (530)
+...|.-+-..+ +.+|.+ ..+++++. +.+--.+..+...+..+|.++....+. ... ...-
T Consensus 447 ~~rILhlLG~Eg---P~a~~P-skyir~iy---------NRviLEn~ivRaaAv~alaKfg~~~~~--l~~-----sI~v 506 (865)
T KOG1078|consen 447 AVRILHLLGKEG---PKAPNP-SKYIRFIY---------NRVILENAIVRAAAVSALAKFGAQDVV--LLP-----SILV 506 (865)
T ss_pred HHHHHHHHhccC---CCCCCc-chhhHHHh---------hhhhhhhhhhHHHHHHHHHHHhcCCCC--ccc-----cHHH
Confidence 555665554321 122221 13444433 222223455566677777777622111 111 1234
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 498 AMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 498 ~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
.|.+++++.+.++++.|...+...
T Consensus 507 llkRc~~D~DdevRdrAtf~l~~l 530 (865)
T KOG1078|consen 507 LLKRCLNDSDDEVRDRATFYLKNL 530 (865)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHh
Confidence 567778888888888887666544
No 177
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.10 E-value=0.99 Score=46.00 Aligned_cols=186 Identities=13% Similarity=0.143 Sum_probs=118.8
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647 94 EELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 172 (530)
Q Consensus 94 ~~l~~~l~~l~s~-d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~ 172 (530)
..+..++..+.+. ..+.+-.|+..|-++++.+.-.-+.+.. ..++-.+++.|....++..+..|.+.|..++..++
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-- 362 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-- 362 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch--
Confidence 3445555555443 5667888999999998766544343333 33566778888764445566679999999997654
Q ss_pred HHhhcC----CcHHHHHhhcCCCCHHHHHHHHHH-HHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHH
Q 009647 173 TKALLP----ALPLLIAHLGEKSSSPVAEQCAWA-LGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN 247 (530)
Q Consensus 173 ~~~i~~----~v~~L~~lL~~~~~~~v~~~a~~~-L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~n 247 (530)
..+++ +|..+++.-.+ ++.++...|.-+ +.-++...|..+ |..+..++...|......++.++..
T Consensus 363 -~~l~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 363 -ARLFDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTK 432 (516)
T ss_pred -HhhhchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHH
Confidence 34443 66677766665 445554444443 444444443322 2334444555666677777778888
Q ss_pred hhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 248 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 248 L~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
++..-..+....+ ...+.|.+++-..+....|+..+..||.++..
T Consensus 433 l~e~l~~EeL~~l--l~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 433 LFERLSAEELLNL--LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHhhcCHHHHHHh--hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 8865321221222 46888999999899999999999999998874
No 178
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=1 Score=49.27 Aligned_cols=181 Identities=14% Similarity=0.129 Sum_probs=115.2
Q ss_pred hcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCc
Q 009647 229 MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 308 (530)
Q Consensus 229 lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~ 308 (530)
.+.++.+.++..+...++.+.+...+. ..+...+++...+..+.+.|+-+..+|...+..||+- ....+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~---~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~i 803 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKA---TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDI 803 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchh---hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhh
Confidence 344566788899999999999754222 2333568899999999999999999999988888863 33456
Q ss_pred hHHHHHHHhcCCC---ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647 309 LQLLVERLATSNS---LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385 (530)
Q Consensus 309 l~~Lv~lL~~~~~---~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~ 385 (530)
+|.+.+.-....+ ++.+..+=.++++++..-.+-..... .-++..++..+..++...|..++..+++++.
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-------~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-------AVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-------HHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 7777774432221 12233333445554433222222222 1245556666666677789999999999986
Q ss_pred CCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHHHHHHHHhcCC
Q 009647 386 GSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 386 ~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA~~aL~nl~~~ 428 (530)
-..-+....+ ..++..++.+. .++++-+|+.|+-.|..+..+
T Consensus 877 ~~a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 877 LLAFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHhhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 4332222211 12455566665 456788999999999988764
No 179
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.95 E-value=1.9 Score=44.07 Aligned_cols=192 Identities=13% Similarity=0.163 Sum_probs=116.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhcCCCc---hhHHHHHhcCChhhhHhhcCCC-------ChhHHHHHHHHHHHhhcC
Q 009647 182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGE---EFRNVLLSQGALPPLARMMLPN-------KGSTVRTAAWALSNLIKG 251 (530)
Q Consensus 182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~---~~r~~~~~~g~i~~L~~lL~~~-------~~~~~~~a~~~L~nL~~~ 251 (530)
.+..++.. .+.+-+-.|+.....++...+ ..|..+++.=+.+.+-+++.+. +.-.+..++..|.-+|+.
T Consensus 15 ~~~~L~~~-k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 15 DCLKLLKG-KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hHHHHhcc-cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 34555555 455667777888888875332 4567788998899999998742 223345566667888876
Q ss_pred CCCCchhhHHHhhchHHHHHHHhccC-CHH------HHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccc
Q 009647 252 PDPKPATELIKVDGLLDAILRHLKRA-DEE------LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324 (530)
Q Consensus 252 ~~~~~~~~~v~~~~~l~~L~~lL~~~-d~~------v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v 324 (530)
..-....+++ ..||.|+.++... |++ +..++-.||.-++. .+...+.++..|.++.+.+.-..++...-
T Consensus 94 pElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d 169 (698)
T KOG2611|consen 94 PELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYELPDGSHD 169 (698)
T ss_pred hhhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhCCCCchh
Confidence 4332333332 6789999988743 222 77888888877776 57778889999999999876532222111
Q ss_pred hhhhHHHHhhhhcCCcccc---chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647 325 LIPVLRSLGNLVAGDSSTI---SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 325 ~~~al~~L~nl~~~~~~~~---~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~ 386 (530)
..-++..+--.+.+.+... ..++ .++..+..=+...+...+.+.|..|+.+...
T Consensus 170 ~alal~Vlll~~~~~~cw~e~~~~fl--------ali~~va~df~~~~~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 170 MALALKVLLLLVSKLDCWSETIERFL--------ALIAAVARDFAVLHNALKFELCHLLSAVLSS 226 (698)
T ss_pred HHHHHHHHHHHHHhcccCcCCHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence 2233333333333322111 1111 1333333333444567788999999976543
No 180
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.94 E-value=0.77 Score=49.13 Aligned_cols=257 Identities=12% Similarity=0.154 Sum_probs=160.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh
Q 009647 96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 175 (530)
Q Consensus 96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~ 175 (530)
+..++..++-.+.+.+..=...|.+-+... | ..++..-++|.|+..+...+........+.-++......+ .
T Consensus 256 ~~~fLeel~lks~~eK~~Ff~~L~~~l~~~---p-e~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e----y 327 (690)
T KOG1243|consen 256 TLLFLEELRLKSVEEKQKFFSGLIDRLDNF---P-EEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEE----Y 327 (690)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHHHHHhhh---h-HHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccc----c
Confidence 344555566677777766666666643322 2 5678888999999988866522111222222233322211 3
Q ss_pred hcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCC
Q 009647 176 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK 255 (530)
Q Consensus 176 i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~ 255 (530)
..+.+|.+++++.. ++..+|-..+.-+-+.. +.+.+.+++.-++|.+..-+.+.+..+++..+.++.-|+.--+
T Consensus 328 q~~i~p~l~kLF~~-~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKS-PDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred ccchhhhHHHHhcC-cchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 33689999999988 77888877665555544 3556677888899999999999999999999999998884321
Q ss_pred chhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCch-HHHHHHHhcCCCccchhhhHHHHhh
Q 009647 256 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVL-QLLVERLATSNSLQLLIPVLRSLGN 334 (530)
Q Consensus 256 ~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l-~~Lv~lL~~~~~~~v~~~al~~L~n 334 (530)
.. ......+..+.++-.+++..++.+..-||+.++.... .....+++ .+..+.+ .++-..-+..++.++..
T Consensus 402 --~~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~----~~~R~~vL~~aftral-kdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 402 --KR-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA----ASVRKRVLASAFTRAL-KDPFVPARKAGVLALAA 473 (690)
T ss_pred --hh-hhcHHHHHHHHhhCccccCcccccceeeecccccccc----hhhhccccchhhhhhh-cCCCCCchhhhhHHHhh
Confidence 11 1234566666666666677899999999988876322 12233333 2333334 23434445555555554
Q ss_pred hhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHH
Q 009647 335 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI 383 (530)
Q Consensus 335 l~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl 383 (530)
....-+.. .+ ...++|.++.+.-+.+..+|..|..++...
T Consensus 474 t~~~~~~~--~v-------a~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 474 TQEYFDQS--EV-------ANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred cccccchh--hh-------hhhccccccccccCcccchhhHHHHHHHHH
Confidence 33322221 12 135888888888888888888877777654
No 181
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.93 E-value=0.33 Score=44.18 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcC--------CCChHHHHHHHHHHHHHhcCChhhHHhhc---CCcH
Q 009647 113 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF--------GSPDEQLLEAAWCLTNIAAGKQEETKALL---PALP 181 (530)
Q Consensus 113 ~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~--------~~~~~~~~eA~~~L~nia~~~~~~~~~i~---~~v~ 181 (530)
..+..|+..|...+-..++.+++.|++..|+.+|.. ......+.+++.||..|..... ....++ +++.
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHH
Confidence 667777777776655667889999999999998852 1334667889999999986653 456666 5899
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhc
Q 009647 182 LLIAHLGEKSSSPVAEQCAWALGNVA 207 (530)
Q Consensus 182 ~L~~lL~~~~~~~v~~~a~~~L~nla 207 (530)
.++..|.+ ++..++..++-.|+-+|
T Consensus 162 ~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 99999987 78999999999999877
No 182
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.83 E-value=3.2 Score=41.50 Aligned_cols=204 Identities=13% Similarity=0.099 Sum_probs=137.3
Q ss_pred HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh-----HHhhcCC-cHHHHHhhcCCCCHHHHHHHHHHHH
Q 009647 131 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE-----TKALLPA-LPLLIAHLGEKSSSPVAEQCAWALG 204 (530)
Q Consensus 131 ~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~-----~~~i~~~-v~~L~~lL~~~~~~~v~~~a~~~L~ 204 (530)
.++.+.+.++.|+..|..-+ -+.+..++.+..++....... .+.+..- -..+..++...+++++.-.|--.|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 45677899999999998654 455667888888887554322 3333333 2233334444455677777777777
Q ss_pred hhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCCHHHH
Q 009647 205 NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEELT 282 (530)
Q Consensus 205 nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~d~~v~ 282 (530)
..+. .+.+...++....+-.+...++.++-++...|.-++.-+...+ +....+.+. -..+...+..+|.+++--++
T Consensus 149 ec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 7666 5677888888989999999999999999999999998755432 223233332 12456677889999999999
Q ss_pred HHHHHHHHHhhcCCchhHH----HHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647 283 TEVAWVVVYLSALSNVATS----LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD 339 (530)
Q Consensus 283 ~~a~~~L~~L~~~~~~~~~----~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 339 (530)
..++..|+.|..+ ..+.. .+-+..-+..++.+| ++.+..++..|..++--.+..+
T Consensus 227 rqslkLL~ellld-r~n~~vm~~yi~~~~nLkl~M~lL-~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 227 RQSLKLLGELLLD-RSNFNVMTRYISSPENLKLMMNLL-RDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHS-GGGHHHHHHHTT-HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHH-S
T ss_pred hhhHHHHHHHHHc-hhHHHHHHHHHCCHHHHHHHHHHh-cCcchhhhHHHHHHHHHHHhCC
Confidence 9999999999863 33333 333455677788888 5788889999999988887664
No 183
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.83 E-value=0.59 Score=51.97 Aligned_cols=181 Identities=17% Similarity=0.146 Sum_probs=125.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH-hhcCCc
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK-ALLPAL 180 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~-~i~~~v 180 (530)
.+-+.+-..+.+|+..+...++... ..+ .-...|.+-.++.....+.+..+...|+.+|.-|+.+-..... ...+..
T Consensus 261 ~~~s~~WK~R~Eale~l~~~l~e~~-~~~-~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~ 338 (815)
T KOG1820|consen 261 EMLSKKWKDRKEALEELVAILEEAK-KEI-VKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVF 338 (815)
T ss_pred hhhccchHHHHHHHHHHHHHHhccc-ccc-ccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhc
Confidence 3348899999999999999887554 111 1122556666666666666666667799999999966544433 334789
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCC-chhh
Q 009647 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK-PATE 259 (530)
Q Consensus 181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~ 259 (530)
|.|+..+.. ....+++.+..++-.++...+ ....++.++..+++.++.+...+.-.+....+...+. ....
T Consensus 339 p~lld~lke-kk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 339 PSLLDRLKE-KKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred chHHHHhhh-ccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 999999987 667888887777766654221 1235677788888888888777555555444432222 2222
Q ss_pred HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
. ..+.+|.++....+.+.+|+..+..++.-+-.
T Consensus 411 t--~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 411 T--VKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred h--HHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 3 45889999999999999999999888877764
No 184
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.80 E-value=0.29 Score=52.91 Aligned_cols=201 Identities=13% Similarity=0.095 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHH
Q 009647 106 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLL 183 (530)
Q Consensus 106 ~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L 183 (530)
+.+..++.+..+|...++.....+ ..+++++...+..+..-...+|++.+++|+++.+...++.++ -+++.+
T Consensus 516 q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~i 589 (748)
T KOG4151|consen 516 QFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKI 589 (748)
T ss_pred hchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhh
Confidence 345556666666652223333222 236667777666543222347899999999998887777776 366665
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHh-cCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647 184 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS-QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 262 (530)
Q Consensus 184 ~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~ 262 (530)
-.++.. .++-++..++.++.|+....--+...+.+ ...++.....+...+.....+++.++..+..-......+ ...
T Consensus 590 e~~~~e-e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~-~~~ 667 (748)
T KOG4151|consen 590 EELMTE-ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSR-ILE 667 (748)
T ss_pred HHHhhc-ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhh-HHH
Confidence 566655 78999999999999999854445555666 345666655665555666666666666444322111111 222
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHH
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE 314 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~ 314 (530)
.......+..++.+++++++...+.+..++.....+....++....++.+..
T Consensus 668 ~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 668 LLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred hhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence 3467778888899999999988888888876655555555555555554443
No 185
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=5.6 Score=40.44 Aligned_cols=262 Identities=15% Similarity=0.121 Sum_probs=162.8
Q ss_pred HHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC----CCC---chhhHHHhhchHHHHHHHhc
Q 009647 203 LGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP----DPK---PATELIKVDGLLDAILRHLK 275 (530)
Q Consensus 203 L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~----~~~---~~~~~v~~~~~l~~L~~lL~ 275 (530)
+.-+|. -|..-..+++.++++.|+.+|.+.+.++..+.+-.|--|..-+ +.. ...+.+...++++.|++-+.
T Consensus 108 mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve 186 (536)
T KOG2734|consen 108 MHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE 186 (536)
T ss_pred HHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH
Confidence 334444 5677778889999999999999999999998888888887532 112 12233446788888888876
Q ss_pred cCCHH------HHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC-CCccchhhhHHHHhhhhcCCccccchhcc
Q 009647 276 RADEE------LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-NSLQLLIPVLRSLGNLVAGDSSTISDVLV 348 (530)
Q Consensus 276 ~~d~~------v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~ 348 (530)
.-|+. -...++..+-|+..-.++....+++.|.+.-|+..+... .-..-...|...++-+...++.....+-
T Consensus 187 RLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~- 265 (536)
T KOG2734|consen 187 RLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG- 265 (536)
T ss_pred HhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc-
Confidence 43333 355677788888887888888888888888777655322 2222344566666666555543222111
Q ss_pred cCCCcchhhHHHHHHHhc---cCc------HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647 349 PGHGITDQVIAVLVKCLK---SEH------RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA 419 (530)
Q Consensus 349 ~g~~~~~~~l~~L~~lL~---~~~------~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~ 419 (530)
...++..+++-+. ..+ .....+-.-+|+.+... +.+...+....++....-+++. ....+..|.
T Consensus 266 -----~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal 338 (536)
T KOG2734|consen 266 -----PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSAL 338 (536)
T ss_pred -----CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence 2345666555442 122 23445555555555443 4667777766666554444444 445677899
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-cCC---------HHHHHHHHHHHHHHHccC
Q 009647 420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-SAD---------IEAARLGLQFMELVLRGM 481 (530)
Q Consensus 420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-~~d---------~~i~~~~L~~L~~il~~~ 481 (530)
.+|-.+..+++ |+ ..|..+++-+++..++.+.- .+. .+.-.-....|..++..+
T Consensus 339 kvLd~am~g~~---gt-----~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 339 KVLDHAMFGPE---GT-----PNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHhCCC---ch-----HHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 99999888764 44 45777888777776665443 111 123334555566666544
No 186
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.66 E-value=0.43 Score=47.16 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=83.7
Q ss_pred hhHHHHH-HHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 009647 356 QVIAVLV-KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG 434 (530)
Q Consensus 356 ~~l~~L~-~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~ 434 (530)
+.+..|+ +.+.+.++.+|+.|..+++-.+--+.+.... .++.+.+.++.++..++..|+.+|..+.... |
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~----g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTH----G 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----C
Confidence 4555554 7788999999999999999888766543332 4667888887788999999999999987531 1
Q ss_pred CchhHHHHHHHH-------HhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647 435 KPKLIQEHLVSL-------VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482 (530)
Q Consensus 435 ~~~~~~~~~~~l-------~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~ 482 (530)
. +..... -...++..|.+.|.+.+++++..+.+++..++-.+.
T Consensus 97 ~-----~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 97 I-----DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred c-----hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 0 111111 124677889999999999999999999999986543
No 187
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.64 E-value=1.3 Score=45.11 Aligned_cols=244 Identities=20% Similarity=0.140 Sum_probs=132.4
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCch
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPA 257 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~ 257 (530)
-|..++.=|....+..+|..++--|+.-|. ++++|..+..+|....+++.+.. ++..+..-++-++..+...+.+ .
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~--~ 98 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL--N 98 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc--c
Confidence 345555555544567889999999999998 68999999999999999998853 3332444444444443333221 1
Q ss_pred hhHHHhhchHHHHHHHhc--cC-------C-----------------------------------HHHHHHHHHHHHHhh
Q 009647 258 TELIKVDGLLDAILRHLK--RA-------D-----------------------------------EELTTEVAWVVVYLS 293 (530)
Q Consensus 258 ~~~v~~~~~l~~L~~lL~--~~-------d-----------------------------------~~v~~~a~~~L~~L~ 293 (530)
...+.....+..+++++. .. + .+.+.-+..|+-.++
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~ 178 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLV 178 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHH
Confidence 222223444555555554 00 0 011112233333331
Q ss_pred c--------------CCchhHHHHHhcCchHHHHHHHhc----C------CC-----ccchhhhHHHHhhhhcCCccccc
Q 009647 294 A--------------LSNVATSLLVKSGVLQLLVERLAT----S------NS-----LQLLIPVLRSLGNLVAGDSSTIS 344 (530)
Q Consensus 294 ~--------------~~~~~~~~i~~~g~l~~Lv~lL~~----~------~~-----~~v~~~al~~L~nl~~~~~~~~~ 344 (530)
. ..+...+.+...|++..+++.+.. . .+ ......++++|-|.+..+.....
T Consensus 179 ~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~ 258 (361)
T PF07814_consen 179 RSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQS 258 (361)
T ss_pred HHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchH
Confidence 0 001112334456778888888751 1 01 11234578888888766655444
Q ss_pred hhcccCCCcchhhHHHHHH----HhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH-------hc-----
Q 009647 345 DVLVPGHGITDQVIAVLVK----CLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL-------LS----- 408 (530)
Q Consensus 345 ~~i~~g~~~~~~~l~~L~~----lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l-------L~----- 408 (530)
..+.. ..+.++.+.. .+...-..+...++.++-|++-.++..+..+-..++...+..+ +.
T Consensus 259 ~l~~~----~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~ 334 (361)
T PF07814_consen 259 YLLSH----RSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYV 334 (361)
T ss_pred HHHHh----cccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccc
Confidence 44332 1223332222 2222234556789999999998887766665543322221111 11
Q ss_pred --CCChhHHHHHHHHHHHhcCCC
Q 009647 409 --TSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 409 --~~~~~v~~eA~~aL~nl~~~~ 429 (530)
...++...-+..++.|++..+
T Consensus 335 ~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 335 PEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred cccccchHHHHHHHhHHHheeeC
Confidence 123566667888888887653
No 188
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.51 E-value=2.5 Score=39.55 Aligned_cols=140 Identities=17% Similarity=0.205 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc----CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhh
Q 009647 282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT----SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV 357 (530)
Q Consensus 282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~----~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~ 357 (530)
+.+++..|..++. +++....++++.+--.+..+|.. .+.+-.+..++..||.++..++.....++- +.++
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl-----~TeI 169 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLL-----TTEI 169 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHH-----Hhhh
Confidence 3455555555565 66666777777766667777742 223456779999999999877655433332 4689
Q ss_pred HHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHH---h-----CCcHHH-HHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 358 IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIH---S-----SEALAL-LLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 358 l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li---~-----~~~l~~-Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
+|..++.+..++.--+..|.+++..|...+. ....+. + ..++.. +.++.+.+++.+-+.++.+..+++.+
T Consensus 170 VPlCLrime~GSelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 170 VPLCLRIMESGSELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999889999999999876432 222111 0 013333 34455778899999999999999875
No 189
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=2.6 Score=45.17 Aligned_cols=223 Identities=16% Similarity=0.144 Sum_probs=136.1
Q ss_pred hhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009647 225 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL 302 (530)
Q Consensus 225 ~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~ 302 (530)
.|-+-|+.++..++.+|+-.+.++.--.+|....+.+. ...-...+.++|.++-+.++..|..-++.+....-+.+..
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 34455667899999999999999875444443222110 1234456888999999999988877776665421111111
Q ss_pred HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN 382 (530)
Q Consensus 303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn 382 (530)
-+-..++..+.+-+......+|+......|-.+....-. ..+++ .++|.+-..|.+....||..+.-.|.-
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le-------~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLE-------QLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHH-------HHHHhcchhhhccchhHHHHHHHHHHH
Confidence 111233444444444445568888888888888755422 22332 477788888888888999999999988
Q ss_pred HhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhH-HHHHHHHHhc--CChHHHHhhh
Q 009647 383 IAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI-QEHLVSLVGR--GCLSGFIDLV 459 (530)
Q Consensus 383 l~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~-~~~~~~l~~~--g~i~~L~~lL 459 (530)
|-...--+...++ -...++..|...+..+.+.-+..|.|.+--.. .|+.. -+.+.+|++. .+...++++|
T Consensus 329 ik~vra~~f~~I~---~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~----k~ee~~c~Rc~tlv~~n~~A~~rf~~~l 401 (1005)
T KOG1949|consen 329 IKAVRAAKFWKIC---PMDHILVRLETDSRPVSRRLVSLIFNSFLPVN----KPEEVWCERCVTLVQMNHAAARRFYQYL 401 (1005)
T ss_pred HHhhhhhhhhccc---cHHHHHHHHhccccHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHccCHHHHHHHHHHh
Confidence 8443222222222 24456666777777777777777888775321 12111 1455677754 3455677777
Q ss_pred ccCC
Q 009647 460 RSAD 463 (530)
Q Consensus 460 ~~~d 463 (530)
..-.
T Consensus 402 ~~~~ 405 (1005)
T KOG1949|consen 402 HEHT 405 (1005)
T ss_pred cccc
Confidence 6533
No 190
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.47 Score=49.30 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=88.8
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 215 (530)
.|+|..+++.--++.++++++.|..+|+-+|..++. .++..+++|+.+.++.||...+.+||-.|.....
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--- 619 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--- 619 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc---
Confidence 456677777644555577778888888888887663 5677788888777899999999999987764321
Q ss_pred HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHH
Q 009647 216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEE 280 (530)
Q Consensus 216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~ 280 (530)
.-++..|-.++.+++.=++..|+-+++-+.-..+|+-.+. ..++...+.+++....++
T Consensus 620 ----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~---v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 620 ----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN---VKRIIKKFNRVIVDKHES 677 (926)
T ss_pred ----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh---HHHHHHHHHHHHhhhhHh
Confidence 1134555566677777778888888887665555554333 357778888888755443
No 191
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.16 Score=54.15 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=82.8
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHH
Q 009647 138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL 217 (530)
Q Consensus 138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~ 217 (530)
+|..|+++--++.++++++.|..+|+-+++.+++ .+|..+.+|+.+.++.||.-++.+||--|... -.+.
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e-- 624 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-------QLPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE-- 624 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecChh-------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH--
Confidence 4555555544455567777788888888888776 46788888888788999999999999877643 1111
Q ss_pred HhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHH
Q 009647 218 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE 284 (530)
Q Consensus 218 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~ 284 (530)
+|..|-.+.+++..=++..|+-+++-+.-..++..++. ..++...+.+++.+..++....
T Consensus 625 ----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk---v~~frk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 625 ----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK---VNGFRKQLEKVINDKHEDGMAK 684 (929)
T ss_pred ----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch---HHHHHHHHHHHhhhhhhHHHHH
Confidence 23333344445555566667777765443333333333 3577788888887665554433
No 192
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.33 E-value=0.31 Score=36.72 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHHHhcCC
Q 009647 373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~ 428 (530)
.|.|+|+++++++ ++..++.+.+.++++.++++.. ++...+|--|.++|+-++..
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 5789999999976 4566777778899999999986 56678999999999888763
No 193
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.95 E-value=7.8 Score=43.34 Aligned_cols=207 Identities=18% Similarity=0.158 Sum_probs=117.5
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-----ChhHHHHHHHHHHHhhcCCC
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~nL~~~~~ 253 (530)
+...++.-|.+....+.-..-.+.++++ +.+.|++..++.++.+- .......+...|...|.-
T Consensus 85 AtE~~v~~l~~~~~~~~d~e~~~~~~~v----------~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-- 152 (802)
T PF13764_consen 85 ATEEFVESLEDDSEEEEDPEQEFKIASV----------LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-- 152 (802)
T ss_pred cchhhHhhccCccccccCHHHHHHHHHH----------hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh--
Confidence 7888888886633222222223333332 33578999999988742 346667777777777754
Q ss_pred CCchhhHHHhhchHHHHHHHhc----cCC----HHHHHHHHHHHHHhhcCCc-hhHH---HHHhc--------CchHHHH
Q 009647 254 PKPATELIKVDGLLDAILRHLK----RAD----EELTTEVAWVVVYLSALSN-VATS---LLVKS--------GVLQLLV 313 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~----~~d----~~v~~~a~~~L~~L~~~~~-~~~~---~i~~~--------g~l~~Lv 313 (530)
+..+..+...++++.|++.+. .+. +++....+..+--|..... .... ..... .-+..++
T Consensus 153 -~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL 231 (802)
T PF13764_consen 153 -KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLL 231 (802)
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHH
Confidence 234555556899999988775 333 4565555555555543211 0010 00011 1144455
Q ss_pred HHHhc---CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-----CcHhHHHHHHHHHHHHhc
Q 009647 314 ERLAT---SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-----EHRVLKKEAAWVLSNIAA 385 (530)
Q Consensus 314 ~lL~~---~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-----~~~~i~~~A~~~Lsnl~~ 385 (530)
+.+.. ..++.+....++.|.+++.|+++..+.+++. +-|. +.+=.- .+..+. +-++..|+.
T Consensus 232 ~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-------F~p~-l~f~~~D~~~~~~~~~~---Le~F~~i~~ 300 (802)
T PF13764_consen 232 ERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-------FKPY-LDFDKFDEEHSPDEQFK---LECFCEIAE 300 (802)
T ss_pred HHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-------HHHh-cChhhcccccCchHHHH---HHHHHHHHh
Confidence 55531 1356778899999999999998877766641 2222 222111 111222 334444443
Q ss_pred C------CHHHHHHHHhCCcHHHHHHHhcC
Q 009647 386 G------SVEHKQLIHSSEALALLLHLLST 409 (530)
Q Consensus 386 ~------~~~~~~~li~~~~l~~Li~lL~~ 409 (530)
+ .....+.+++.|++...++.|..
T Consensus 301 ~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 301 GIPNNSNGNRLKDKILESGIVQDAIDYLLK 330 (802)
T ss_pred cCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence 3 23566778899999988888844
No 194
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.92 E-value=7.7 Score=38.90 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=112.8
Q ss_pred hHHHHHHHhccCcHhHHHHHHHHHHHHhc-CCHHHHHHHHhC-Cc-HHHHHHHhcCC-----C--------hhHHHHHHH
Q 009647 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAA-GSVEHKQLIHSS-EA-LALLLHLLSTS-----P--------FDIKKEVAY 420 (530)
Q Consensus 357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~-~~~~~~~~li~~-~~-l~~Li~lL~~~-----~--------~~v~~eA~~ 420 (530)
-+..+.+.|.+.++.+...++..+..++. .+......+... +. .+.+..++... + +++|...+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 37788888988888888899999999998 666667776654 33 45566666321 1 278888888
Q ss_pred HHHHhcCCCCCCCCCchhHHHHHHH-HHhcCChHHHHhhhccCCHHHHHHHHHHHHH-HHccCCCCc-chhHHHHhchHH
Q 009647 421 VLGNLCVSPTEGEGKPKLIQEHLVS-LVGRGCLSGFIDLVRSADIEAARLGLQFMEL-VLRGMPNHE-GTKLVEREDGID 497 (530)
Q Consensus 421 aL~nl~~~~~~~~~~~~~~~~~~~~-l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~-il~~~~~~~-~~~~i~~~ggl~ 497 (530)
.+..+.... .| ..... |.+.+.+..++.-|..++++++..+|++|.. ++....-.. ....+.....+.
T Consensus 137 F~Lsfl~~~-----~~----~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~ 207 (330)
T PF11707_consen 137 FWLSFLSSG-----DP----ELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLS 207 (330)
T ss_pred HHHHHHccC-----CH----HHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHH
Confidence 776666542 22 33444 4567889999999999889999999999984 654321111 123445566888
Q ss_pred HHHHHhcCCcH----HHHHHHHHHHHhhcCC
Q 009647 498 AMERFQFHENE----DLRNMANGLVDKYFGE 524 (530)
Q Consensus 498 ~L~~L~~~~~~----~i~~~A~~il~~~f~~ 524 (530)
+|..|-..+++ .+.+.+.+.+..++.+
T Consensus 208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 208 QLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 88888888877 9999999999887644
No 195
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.91 E-value=7.8 Score=41.83 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=76.2
Q ss_pred hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC-Cc
Q 009647 219 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SN 297 (530)
Q Consensus 219 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~ 297 (530)
-.|.+..+++-..+++..++..++-.|.-+... ... ..+-+ -.+....+..-+.+..+.|+..|..||+++-.. .+
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~e-idd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAE-IDDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccc-cCHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 345566677777788999999999999888852 222 22332 356677777777788889999999999999842 22
Q ss_pred hhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhh
Q 009647 298 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN 334 (530)
Q Consensus 298 ~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~n 334 (530)
+. ..++..++.++...++++|+..|+..|.+
T Consensus 160 ee------~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 160 EE------CPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred Cc------ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 22 24566777778778899999988766553
No 196
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=1 Score=49.28 Aligned_cols=221 Identities=12% Similarity=0.133 Sum_probs=131.9
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHh
Q 009647 184 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKV 263 (530)
Q Consensus 184 ~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~ 263 (530)
+..+.+ +.+.++..++..|..+.... +-...+...+++...+..+++.++-+.-+|+..+..||.-. .
T Consensus 733 i~sl~d-~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy----------~ 800 (982)
T KOG4653|consen 733 ISSLHD-DQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY----------P 800 (982)
T ss_pred HHHhcC-CcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc----------c
Confidence 333433 55678999999999998743 55566778899999999999999999999999999998531 2
Q ss_pred hchHHHHHHHhcc-CC---HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647 264 DGLLDAILRHLKR-AD---EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD 339 (530)
Q Consensus 264 ~~~l~~L~~lL~~-~d---~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 339 (530)
..++|-+...-.+ .+ ++.+..+-.++.++...-.+....- ..-++...+..+ ++++...+..++..+|+++.-.
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~~Li~tfl~gv-repd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KAVLINTFLSGV-REPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhc-CCchHHHHHhHHHHHHHHHHHH
Confidence 3566776663321 11 2222222233333332111111111 112233333333 3556666889999999998655
Q ss_pred ccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHHHHhcCCHHHHHHHH---hCCcHHHHHHHh-cCCChhH
Q 009647 340 SSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIH---SSEALALLLHLL-STSPFDI 414 (530)
Q Consensus 340 ~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~~~~~~li---~~~~l~~Li~lL-~~~~~~v 414 (530)
.-+....+ ..++..++.+... +.+-+|+.|+..+..+-.|.....-.+. ..+....+.... .+++..+
T Consensus 879 a~~vsd~~-------~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~ 951 (982)
T KOG4653|consen 879 AFQVSDFF-------HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGL 951 (982)
T ss_pred hhhhhHHH-------HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 43333222 2355556666554 4568999999999999887644333322 112344444444 3445557
Q ss_pred HHHHHHHHHHh
Q 009647 415 KKEVAYVLGNL 425 (530)
Q Consensus 415 ~~eA~~aL~nl 425 (530)
+..|+.++--+
T Consensus 952 klhaql~leei 962 (982)
T KOG4653|consen 952 KLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHH
Confidence 77777666444
No 197
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.82 E-value=4.3 Score=44.97 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=118.7
Q ss_pred HHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhH--HHHHHHh
Q 009647 288 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI--AVLVKCL 365 (530)
Q Consensus 288 ~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l--~~L~~lL 365 (530)
+|++++...++.+..+++.|+...+...+......++...+++.++|++...+........ ..+ ..+..++
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~-------~~~~~~~f~~~~ 566 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIF-------EFIDFSVFKVLL 566 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHH-------HHHHHHHHHHHH
Confidence 7888998889999999999999999999975667788899999999999665433221111 111 1333344
Q ss_pred ccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 009647 366 KSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV 444 (530)
Q Consensus 366 ~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~ 444 (530)
...+. +.-..|+.+++.+...+++. .+. .-+..+...+......-. + .. .
T Consensus 567 ~~w~~~ersY~~~siLa~ll~~~~~~----~~~---------------~~r~~~~~~l~e~i~~~~----~-----~~-~ 617 (699)
T KOG3665|consen 567 NKWDSIERSYNAASILALLLSDSEKT----TEC---------------VFRNSVNELLVEAISRWL----T-----SE-I 617 (699)
T ss_pred hhcchhhHHHHHHHHHHHHHhCCCcC----ccc---------------cchHHHHHHHHHHhhccC----c-----cc-e
Confidence 43333 55566666776666554320 011 112222222222221100 0 00 1
Q ss_pred HHHhcCChHH-HHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC-cHHHHHHHHHHHHhh
Q 009647 445 SLVGRGCLSG-FIDLVRS-ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-NEDLRNMANGLVDKY 521 (530)
Q Consensus 445 ~l~~~g~i~~-L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~-~~~i~~~A~~il~~~ 521 (530)
.......+.+ +..++.. ..+..+.-|++++.+++..-++ +++.+.+.||+..++++..+. -.++.+.+..+++..
T Consensus 618 ~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 618 RVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE--YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred eehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh--hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 1122223333 5555554 4566777889999999876544 788999999999998775433 556677777777655
Q ss_pred c
Q 009647 522 F 522 (530)
Q Consensus 522 f 522 (530)
.
T Consensus 696 ~ 696 (699)
T KOG3665|consen 696 E 696 (699)
T ss_pred c
Confidence 4
No 198
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.79 E-value=1.3 Score=48.16 Aligned_cols=136 Identities=19% Similarity=0.201 Sum_probs=81.6
Q ss_pred chHHHHHHHhccC----CHHHHHHHHHHHHHhhc---CCchhHHHHHhcCchHHHHHHHhc---CCCccchhhhHHHHhh
Q 009647 265 GLLDAILRHLKRA----DEELTTEVAWVVVYLSA---LSNVATSLLVKSGVLQLLVERLAT---SNSLQLLIPVLRSLGN 334 (530)
Q Consensus 265 ~~l~~L~~lL~~~----d~~v~~~a~~~L~~L~~---~~~~~~~~i~~~g~l~~Lv~lL~~---~~~~~v~~~al~~L~n 334 (530)
..+..+..++.++ .+.+...++-+++.+.. ...+.....+-...++.+.+.|.. ..+...+.-++++|||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 4456666777643 34566666666665553 111111111112355666665542 3455556789999999
Q ss_pred hhcCCccccchhcccCCCcchhhHHHHHHHhc-c--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc--C
Q 009647 335 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-S--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS--T 409 (530)
Q Consensus 335 l~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~--~ 409 (530)
+-.. ..++.|..++. . ....+|..|+|+|..++...+..+ -+.|+.++. .
T Consensus 473 ~g~~-----------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~ 527 (574)
T smart00638 473 AGHP-----------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRA 527 (574)
T ss_pred cCCh-----------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCC
Confidence 8532 35566666665 2 245899999999999976554443 345666664 3
Q ss_pred CChhHHHHHHHHHHHh
Q 009647 410 SPFDIKKEVAYVLGNL 425 (530)
Q Consensus 410 ~~~~v~~eA~~aL~nl 425 (530)
.++++|..|..+|...
T Consensus 528 e~~EvRiaA~~~lm~t 543 (574)
T smart00638 528 EPPEVRMAAVLVLMET 543 (574)
T ss_pred CChHHHHHHHHHHHhc
Confidence 5678898888887653
No 199
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.77 E-value=1.5 Score=46.49 Aligned_cols=126 Identities=18% Similarity=0.194 Sum_probs=80.5
Q ss_pred CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 009647 320 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA 399 (530)
Q Consensus 320 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~ 399 (530)
++.....-|...|......-++.. ..++..++.|..+.+..||+.|+..|..+|..+++.+..+.+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~-----------~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD--- 99 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQ-----------EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD--- 99 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGH-----------HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH-----------HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH---
Confidence 456667777778887776655432 357888999999999999999999999999998888777654
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc---cCCHHHHHHHHHHHHH
Q 009647 400 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR---SADIEAARLGLQFMEL 476 (530)
Q Consensus 400 l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~---~~d~~i~~~~L~~L~~ 476 (530)
.|+++|++.++.....+-++|..+.... ..+.+..|++-+. ++|..+...++.+|..
T Consensus 100 --vL~QlL~tdd~~E~~~v~~sL~~ll~~d------------------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 100 --VLVQLLQTDDPVELDAVKNSLMSLLKQD------------------PKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp --HHHHHTT---HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred --HHHHHHhcccHHHHHHHHHHHHHHHhcC------------------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 7999999888766655666665554311 1233445555554 5777788888888865
Q ss_pred HHc
Q 009647 477 VLR 479 (530)
Q Consensus 477 il~ 479 (530)
-+.
T Consensus 160 kl~ 162 (556)
T PF05918_consen 160 KLK 162 (556)
T ss_dssp HGG
T ss_pred HHh
Confidence 554
No 200
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.72 E-value=3.3 Score=39.40 Aligned_cols=183 Identities=12% Similarity=0.119 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHHhhcCCchhHHHHH-hcCchHHHHHHHhc------CCC-----ccchhhhHHHHhhhhcCCccccch
Q 009647 278 DEELTTEVAWVVVYLSALSNVATSLLV-KSGVLQLLVERLAT------SNS-----LQLLIPVLRSLGNLVAGDSSTISD 345 (530)
Q Consensus 278 d~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~~Lv~lL~~------~~~-----~~v~~~al~~L~nl~~~~~~~~~~ 345 (530)
+++.+++|+.-|+.--+..++-.-.+- .-|.+..|++-+.. .+. ..-...|+..+..++++++... .
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~-~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRM-P 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHH-H
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHH-H
Confidence 456666666655555443333322222 34555555443321 111 0123456777777777665443 3
Q ss_pred hcccCCCcchhhHHHHHHHhccCc-----HhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647 346 VLVPGHGITDQVIAVLVKCLKSEH-----RVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA 419 (530)
Q Consensus 346 ~i~~g~~~~~~~l~~L~~lL~~~~-----~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~ 419 (530)
+++ ..+.-.|..+|+..+ +.+|-.+..+++.+... +++.+..+.+..++|..++.++.++.-.|..|.
T Consensus 87 Fl~------a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAt 160 (262)
T PF04078_consen 87 FLK------AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVAT 160 (262)
T ss_dssp HHH------TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHH------cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHH
Confidence 443 245555666664432 47899999999999874 567788889999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHh--------cCChHHHHh-hhccCCHHHHHHHHHHHHHHH
Q 009647 420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVG--------RGCLSGFID-LVRSADIEAARLGLQFMELVL 478 (530)
Q Consensus 420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~--------~g~i~~L~~-lL~~~d~~i~~~~L~~L~~il 478 (530)
+.+..+..+. .-..++.+ ..++..++. +.+.+++.+.+.++++-..+.
T Consensus 161 fIlqKIL~dd-----------~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 161 FILQKILLDD-----------VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HHHHHHHHSH-----------HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHcch-----------hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 9998886542 22233322 233444443 444577888888888777765
No 201
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.68 E-value=0.78 Score=51.76 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=107.9
Q ss_pred chHHHHHHHhc----cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647 265 GLLDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 340 (530)
Q Consensus 265 ~~l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 340 (530)
.+.|.++.+.+ ..||+++..|.-||+.+..-+.+.+. .-+|.|...+..++++-++.++.-++|-++-.-+
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 35666777764 46789999999999988874443332 3478888888789999999999999998876544
Q ss_pred cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHH
Q 009647 341 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAY 420 (530)
Q Consensus 341 ~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~ 420 (530)
.. ++ -.-+.|..-|.+.++.+|+.|..+++++...+. +--.|-++.+...+.+++..++.-|-.
T Consensus 994 nl----ie-------~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen 994 NL----IE-------PWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred cc----cc-------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence 33 32 356778888999999999999999999976542 223578889999999999988887775
Q ss_pred HHHHhcC
Q 009647 421 VLGNLCV 427 (530)
Q Consensus 421 aL~nl~~ 427 (530)
..-.+..
T Consensus 1058 FF~Els~ 1064 (1251)
T KOG0414|consen 1058 FFKELSS 1064 (1251)
T ss_pred HHHHhhh
Confidence 5555543
No 202
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.53 E-value=2.7 Score=39.92 Aligned_cols=139 Identities=17% Similarity=0.211 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC----ccchhhhHHHHhhhhcCCcccc-chhcccCCCcchh
Q 009647 282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS----LQLLIPVLRSLGNLVAGDSSTI-SDVLVPGHGITDQ 356 (530)
Q Consensus 282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~----~~v~~~al~~L~nl~~~~~~~~-~~~i~~g~~~~~~ 356 (530)
+.+|+..|..++. +++....++++.+.-.|..+|..... +.++..++..+|.++..++... ..++ +..
T Consensus 67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl------~tE 139 (262)
T PF04078_consen 67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLL------QTE 139 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHH------CTT
T ss_pred HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHH------hhc
Confidence 3345555556666 67777888899988888888853221 3456789999999998665543 4444 457
Q ss_pred hHHHHHHHhccCcHhHHHHHHHHHHHHhcC---------CHHHHHHHHhCCcHHHHHH-HhcCCChhHHHHHHHHHHHhc
Q 009647 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---------SVEHKQLIHSSEALALLLH-LLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~---------~~~~~~~li~~~~l~~Li~-lL~~~~~~v~~eA~~aL~nl~ 426 (530)
++|...+.+..++.--|..|.+++..|... +.+...++.. ++..++. +...+++.+-|..+++-..++
T Consensus 140 iiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 140 IIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 999999999999888889999999987653 3334444433 4445444 346778899999999999998
Q ss_pred CCC
Q 009647 427 VSP 429 (530)
Q Consensus 427 ~~~ 429 (530)
.++
T Consensus 218 dnp 220 (262)
T PF04078_consen 218 DNP 220 (262)
T ss_dssp TST
T ss_pred cCH
Confidence 764
No 203
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.44 E-value=0.38 Score=52.88 Aligned_cols=169 Identities=18% Similarity=0.177 Sum_probs=92.9
Q ss_pred hhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc----CCHHHHHHHHHHHHHhhcC---
Q 009647 223 LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVAWVVVYLSAL--- 295 (530)
Q Consensus 223 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~--- 295 (530)
+..+..++.+....-.+ +.+.|..|.... ..|.. ..+..+..++.. .++.+...|+-+++.|...
T Consensus 397 v~~i~~~I~~~~~~~~e-a~~~l~~l~~~~-~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDDE-AAQLLASLPFHV-RRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHTT-S-HHH-HHHHHHHHHHT------H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHH-HHHHHHHHHhhc-CCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 44555666655433333 333344444332 12323 344555555542 3455666666666666531
Q ss_pred Cc------hhHHHHHhcCchHHHHHHHh---cCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc
Q 009647 296 SN------VATSLLVKSGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK 366 (530)
Q Consensus 296 ~~------~~~~~i~~~g~l~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~ 366 (530)
.. ......+...+++.+...|. ...+..-+..++++|||+-.. ..++.|..++.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------------~~i~~l~~~i~ 531 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------------ESIPVLLPYIE 531 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------------GGHHHHHTTST
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------------hhhHHHHhHhh
Confidence 11 00011122345566666664 345556778899999998421 37788888886
Q ss_pred cC---cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC--CChhHHHHHHHHHHH
Q 009647 367 SE---HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGN 424 (530)
Q Consensus 367 ~~---~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~--~~~~v~~eA~~aL~n 424 (530)
.. ...+|..|+|++..++...+..+ .+.|..++.+ .++++|..|..+|..
T Consensus 532 ~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 532 GKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp TSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 65 56899999999999977666543 4566777744 457788888877765
No 204
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.38 E-value=3.7 Score=39.19 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC
Q 009647 156 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN 233 (530)
Q Consensus 156 ~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~ 233 (530)
..|+..|.-++--++..+...- .++..|+.+|.....+.++..++.+|-.+..|++.+...+-+.+++..+++++++.
T Consensus 109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~ 188 (257)
T PF08045_consen 109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSK 188 (257)
T ss_pred HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccc
Confidence 3467788777766665544444 58999999996556789999999999999999999999999999999999999964
Q ss_pred --ChhHHHHHHHHHHHhh
Q 009647 234 --KGSTVRTAAWALSNLI 249 (530)
Q Consensus 234 --~~~~~~~a~~~L~nL~ 249 (530)
+.+++-.++-.|.-..
T Consensus 189 ~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 189 STDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccHHHhHHHHHHHHHHH
Confidence 5677666666665444
No 205
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.37 E-value=2.2 Score=39.94 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh-------
Q 009647 104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL------- 176 (530)
Q Consensus 104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i------- 176 (530)
+++.+..++.++..+..++..++..-+......++||..++.+..++ ...+.-|+.++..|-.++.. ...+
T Consensus 135 ~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS-elSKtvA~fIlqKIlldD~G-L~YiCqt~eRF 212 (293)
T KOG3036|consen 135 SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS-ELSKTVATFILQKILLDDVG-LYYICQTAERF 212 (293)
T ss_pred CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc-HHHHHHHHHHHHHHhhcccc-HHHHHHhHHHH
Confidence 45678889999999999988776655566678999999999999876 45567799999999876642 1111
Q ss_pred --c-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHh
Q 009647 177 --L-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS 219 (530)
Q Consensus 177 --~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~ 219 (530)
+ ..+..++..|.+.+++.+...++.+.-+++. ++..|..+..
T Consensus 213 ~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL~~ 257 (293)
T KOG3036|consen 213 SAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAALRS 257 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHHHh
Confidence 1 2344555555555889999999999999985 6777766554
No 206
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.04 E-value=0.27 Score=43.54 Aligned_cols=148 Identities=16% Similarity=0.203 Sum_probs=92.9
Q ss_pred cHHHHHhhcC-CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 180 LPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 180 v~~L~~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
+..++..|.. ...++++.++.-++..+- +..++...+ -+-+.+-.++...+.+-...+..++..+..+. |....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHH
Confidence 4456665553 356789999999998884 233333221 12233334445444556777888888887653 44455
Q ss_pred hHHHhhchHHHHHHHhc--cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCcc-chhhhHHHHhh
Q 009647 259 ELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQ-LLIPVLRSLGN 334 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~-v~~~al~~L~n 334 (530)
.++...|+++.+..+.. .++..+...++.+|..=|. +. .+...+...+++-|-+.+..+++.. ++..|+-.|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 56667899999999999 7788888888888876653 33 4444444556777887774344444 66666655543
No 207
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.88 E-value=1.6 Score=39.47 Aligned_cols=145 Identities=19% Similarity=0.158 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhhcCCCCCchhh----HHH-----hhchHHHHH-HHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 009647 237 TVRTAAWALSNLIKGPDPKPATE----LIK-----VDGLLDAIL-RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS 306 (530)
Q Consensus 237 ~~~~a~~~L~nL~~~~~~~~~~~----~v~-----~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~ 306 (530)
++.+|+.+|..+++..+++...- ++. ..+.-+.|+ -++.++++.++..|+.+|..|-++...+....-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 56677778877777633332111 111 112223333 44567788999999999999998765554433321
Q ss_pred C-------------------chHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc
Q 009647 307 G-------------------VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS 367 (530)
Q Consensus 307 g-------------------~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~ 367 (530)
. +-..|+..|....+..+....+++++.++...+...-. .| .-..++..+..++.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~--ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PG--LLTEVVTQVRPLLRH 156 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---Hh--HHHHHHHHHHHHHhc
Confidence 1 11245555655567888899999999999887754311 00 012455666677888
Q ss_pred CcHhHHHHHHHHHHHHhcC
Q 009647 368 EHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 368 ~~~~i~~~A~~~Lsnl~~~ 386 (530)
.|++++..+.-+++.+.+-
T Consensus 157 ~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 157 RDPNVRVAALSCLGALLSV 175 (182)
T ss_pred CCCcHHHHHHHHHHHHHcC
Confidence 9999999999999988654
No 208
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.68 E-value=9.2 Score=36.89 Aligned_cols=218 Identities=14% Similarity=0.092 Sum_probs=131.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC--CChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647 183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATEL 260 (530)
Q Consensus 183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 260 (530)
|=.+|.+ +++.+|..|+.+|+.+...-+. ..+...-+..|+.++.+ .|......++.++..|.+.+.. ..+.
T Consensus 4 Lg~~Lts-ed~~~R~ka~~~Ls~vL~~lp~---~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~--~~~~ 77 (262)
T PF14500_consen 4 LGEYLTS-EDPIIRAKALELLSEVLERLPP---DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF--SPES 77 (262)
T ss_pred hhhhhCC-CCHHHHHHHHHHHHHHHHhCCH---hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC--Chhh
Confidence 3356666 7899999999999998864432 22334446666666553 3566666667778777755421 1111
Q ss_pred HHhhchHHHHHHHhc--cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 261 IKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 261 v~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
...++..+.+-.+ .-....+..+...|..+.....+....+ ..+.+..+++.+....||..+.-+...+..+...
T Consensus 78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 1233333333222 1123567888888888887544333222 2456777888787777888888888888877655
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhc--------c--CcH-h-HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLK--------S--EHR-V-LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL 406 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~--------~--~~~-~-i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l 406 (530)
-+. . ...+.+...+. . +++ . .+..-..+|.+....++.... -.+|.|++-
T Consensus 155 ~~~--~-----------~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleK 216 (262)
T PF14500_consen 155 FDI--S-----------EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEK 216 (262)
T ss_pred ccc--c-----------hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHH
Confidence 442 1 12223333221 1 122 2 233444455555455544322 268999999
Q ss_pred hcCCChhHHHHHHHHHHHhcC
Q 009647 407 LSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 407 L~~~~~~v~~eA~~aL~nl~~ 427 (530)
|.++...++..++.+|..++.
T Consensus 217 L~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 217 LDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred HcCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 209
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.67 E-value=14 Score=38.28 Aligned_cols=262 Identities=15% Similarity=0.083 Sum_probs=136.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC--hhhHHhh
Q 009647 99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK--QEETKAL 176 (530)
Q Consensus 99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~--~~~~~~i 176 (530)
+.+...+++...+-.|+..|.+..+.- |..-.-...-.+..++.-|-.+.+.+++.||..+|+.+...- .+.....
T Consensus 263 la~ka~dp~a~~r~~a~r~L~~~as~~--P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 263 LANKATDPSAKSRGMACRGLGNTASGA--PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HHHhccCchhHHHHHHHHHHHHHhccC--cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 334556777788889999999987752 322112224466667777766666888999999999887321 1122233
Q ss_pred cCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC-CchhHHHHH--hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 177 LPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLL--SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 177 ~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~--~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
+++.-.+..++.+ .+++++..|...+|.++.- +...++.+. -.+...+++-.|+++++.+.+++ .+....|.
T Consensus 341 l~ialrlR~l~~s-e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC-r~~~~~c~--- 415 (533)
T KOG2032|consen 341 LNIALRLRTLFDS-EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC-RSELRTCY--- 415 (533)
T ss_pred hhHHHHHHHHHHh-cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH-HHHHHhcC---
Confidence 3555566667766 7889999998877776631 123344333 22344556666777777665543 33334442
Q ss_pred CCchhhHHHhhchHHHHHHHhccCCHHH-HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHH
Q 009647 254 PKPATELIKVDGLLDAILRHLKRADEEL-TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L 332 (530)
|...++. ..++++..+.... +.. .-..-||+ .+....++.......+ ..-++ ++.-+.++..+...-
T Consensus 416 p~l~rke--~~~~~q~~ld~~~---~~~q~Fyn~~c~-~L~~i~~d~l~~~~t~-----~~~~f-~sswe~vr~aavl~t 483 (533)
T KOG2032|consen 416 PNLVRKE--LYHLFQESLDTDM---ARFQAFYNQWCI-QLNHIHPDILMLLLTE-----DQHIF-SSSWEQVREAAVLKT 483 (533)
T ss_pred chhHHHH--HHHHHhhhhHHhH---HHHHHHHHHHHH-HHhhhCHHHHHHHHHh-----chhhe-ecchHHHHHHHHHHH
Confidence 2222222 2344443221110 000 11122322 1222122222222111 11122 234445555555555
Q ss_pred hhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHh
Q 009647 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384 (530)
Q Consensus 333 ~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~ 384 (530)
++....-..+.....+ -..+...+-.+...+-+++++.|..++.-+.
T Consensus 484 ~~~vd~l~~~~c~~~d-----~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 484 TRSVDSLVRAACSSAD-----GLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHhHHHHHHHhh-----HHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 5555443333222221 1234555666667777888888888876553
No 210
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.63 E-value=3.8 Score=41.93 Aligned_cols=168 Identities=15% Similarity=0.064 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhc-CChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc--CChhhhHhhc
Q 009647 155 LLEAAWCLTNIAA-GKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMM 230 (530)
Q Consensus 155 ~~eA~~~L~nia~-~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~lL 230 (530)
+.+|..-|..+.. +....-...+ ..+-.+++.|+.+.+..++..|+..|+.++...+ ..+.+. -+|..++..-
T Consensus 304 ~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~---~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 304 RKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP---ARLFDSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch---HhhhchHHHHHHHHHHHH
Confidence 3456664555543 4333333333 3677888889886788899999999999997432 122222 2344444444
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc-hhHHHHHhcCch
Q 009647 231 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-VATSLLVKSGVL 309 (530)
Q Consensus 231 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~l 309 (530)
.+.+.++.+.|.-++..+.....|. .. +..+..++...|......++..+..++..-. +....+ -..+.
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~--~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~l-l~dia 450 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPL--QC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNL-LPDIA 450 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCch--hH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHh-hhhhh
Confidence 5666666666665544433333332 22 2234444455777777777778878876322 222112 24678
Q ss_pred HHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647 310 QLLVERLATSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 310 ~~Lv~lL~~~~~~~v~~~al~~L~nl~ 336 (530)
|.+++.. ++.+..++..|..||-.+.
T Consensus 451 P~~iqay-~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 451 PCVIQAY-DSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hHHHHHh-cCchHHhhhhHHHhHHHHH
Confidence 8888877 5778889999999998876
No 211
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.61 E-value=11 Score=36.80 Aligned_cols=211 Identities=15% Similarity=0.227 Sum_probs=139.6
Q ss_pred HHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC--CchhhHH-HhhchHHHHHHHhccCCHHHHHHHHHHHH
Q 009647 214 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPATELI-KVDGLLDAILRHLKRADEELTTEVAWVVV 290 (530)
Q Consensus 214 r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~v-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 290 (530)
...+..+|.+..|+..+..-+.+.+..++....|+-+.... .+..+++ .....++.|++--.. .+++...+-..|.
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 34566788999999999888888889999999998864321 1222222 122344444444111 2556555555555
Q ss_pred HhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcH
Q 009647 291 YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR 370 (530)
Q Consensus 291 ~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~ 370 (530)
...+ .+.-...+....-+...-.++ ..+.-++...|..+...+.+........++... .+.-+.++--.++.+++.
T Consensus 151 Ecir-he~LakiiL~s~~~~~FF~~v-q~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n--~d~ff~e~~~~Ll~s~Ny 226 (342)
T KOG1566|consen 151 ECIR-HEFLAKIILESTNFEKFFLYV-QLPNFDIASDAFSTFKELLTRHKSVVAEFLIRN--YDNFFAEVYEKLLRSENY 226 (342)
T ss_pred HHHh-hHHHHHHHHcchhHHHHHHHH-hccchHHHHHHHHHHHHHHHHhHHHHHHHHHhC--hhhhHHHHHHHHhcccce
Confidence 5554 444556666676777777666 467778888888888888876654443333210 001123446678889999
Q ss_pred hHHHHHHHHHHHHhcCCH--H-HHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647 371 VLKKEAAWVLSNIAAGSV--E-HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 371 ~i~~~A~~~Lsnl~~~~~--~-~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 429 (530)
-++..+...++.+..+.+ . ..+.+-+..-+..+..+|++++..+|-+|--+..-+..++
T Consensus 227 vtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 227 VTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred ehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 999999999999876532 2 2233434456888999999999999999999988888765
No 212
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.51 E-value=0.6 Score=49.67 Aligned_cols=132 Identities=19% Similarity=0.158 Sum_probs=98.8
Q ss_pred CChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhh
Q 009647 150 SPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 229 (530)
Q Consensus 150 ~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~l 229 (530)
+++++|..|..+|..+-+-+.+ .+..-+|.|+..+..+++|.+|.+|+-.||.++.-.....+. .-..|.+-
T Consensus 908 sd~~lq~aA~l~L~klMClS~~---fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrr 979 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFE---FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRR 979 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHH
Confidence 4578888888888877654433 233478999999997799999999999999877533222222 23456666
Q ss_pred cCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 009647 230 MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS 296 (530)
Q Consensus 230 L~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 296 (530)
|.+.+..++++|..++.+|.-.. .+...|-++.++.+|.++|.++..-|-..+..++..+
T Consensus 980 L~De~~~V~rtclmti~fLilag-------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 980 LGDEDADVRRTCLMTIHFLILAG-------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred hcchhhHHHHHHHHHHHHHHHcc-------ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 77788999999999999987432 2235799999999999999988888777777777633
No 213
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.51 E-value=1.9 Score=50.09 Aligned_cols=130 Identities=17% Similarity=0.247 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHH
Q 009647 281 LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV 360 (530)
Q Consensus 281 v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~ 360 (530)
...++.|+..+|+...+ ..+ -+ .+.+..++..| ..+...+++.|++||+.|+.-++.... ...+-..
T Consensus 793 d~~~a~li~~~la~~r~-f~~-sf-D~yLk~Il~~l-~e~~ialRtkAlKclS~ive~Dp~vL~---------~~dvq~~ 859 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARS-FSQ-SF-DPYLKLILSVL-GENAIALRTKALKCLSMIVEADPSVLS---------RPDVQEA 859 (1692)
T ss_pred cchhHHHHHHHHHhhhH-HHH-hh-HHHHHHHHHHh-cCchHHHHHHHHHHHHHHHhcChHhhc---------CHHHHHH
Confidence 35678888888886433 111 11 25677778777 578889999999999999987754221 1234445
Q ss_pred HHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 361 LVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 361 L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
+..-+.+....||..|.-.++......++.+.+. ...+..-..+....|||.|+..++-+|..
T Consensus 860 Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 860 VHGRLNDSSASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred HHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 5556667778999999999999888777765544 34566666777789999999999999974
No 214
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.46 E-value=12 Score=37.39 Aligned_cols=160 Identities=21% Similarity=0.214 Sum_probs=109.8
Q ss_pred hHHHHHHHhcCCCccchhhhHHHHhhhhc-CCccccchhcccCCCcchhhHHHHHHHhccCc-------------HhHHH
Q 009647 309 LQLLVERLATSNSLQLLIPVLRSLGNLVA-GDSSTISDVLVPGHGITDQVIAVLVKCLKSEH-------------RVLKK 374 (530)
Q Consensus 309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~-~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~-------------~~i~~ 374 (530)
++.+.+.| .+....+..++++.|..|+. ........++..= .--.+.|..++.... +++|.
T Consensus 58 ~k~lyr~L-~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~f----d~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~ 132 (330)
T PF11707_consen 58 LKLLYRSL-SSSKPSLTNPALRLLTAIVSFDGGALAREVLRSF----DFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRT 132 (330)
T ss_pred HHHHHHHh-CcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhc----CCchhhHHHHhccccccccccccccccCcCHHH
Confidence 66677777 45667778899999999998 4434444444310 112455566664321 27888
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHh-CCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647 375 EAAW-VLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452 (530)
Q Consensus 375 ~A~~-~Lsnl~~~~~~~~~~li~-~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i 452 (530)
..+. +++.+..+++.....+++ .+.+..+..-|..+++++....+.+|..-..... +-| ......+.+..++
T Consensus 133 ~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~---~v~---r~~K~~~fn~~~L 206 (330)
T PF11707_consen 133 NFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS---SVS---RSTKCKLFNEWTL 206 (330)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC---CCC---hhhhhhhcCHHHH
Confidence 7774 666666777777777765 4678888898988888999999988885443221 111 2334566788899
Q ss_pred HHHHhhhccCCH----HHHHHHHHHHHHHHc
Q 009647 453 SGFIDLVRSADI----EAARLGLQFMELVLR 479 (530)
Q Consensus 453 ~~L~~lL~~~d~----~i~~~~L~~L~~il~ 479 (530)
..|..+....++ .+...+-++|..++.
T Consensus 207 ~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 207 SQLASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 999998888777 788888888888875
No 215
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.37 E-value=3 Score=41.13 Aligned_cols=170 Identities=18% Similarity=0.111 Sum_probs=114.5
Q ss_pred ChhhhH-hhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC-chh
Q 009647 222 ALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS-NVA 299 (530)
Q Consensus 222 ~i~~L~-~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~ 299 (530)
.+..|+ ..++++++.+++.++.||+-.|--+. +. ....++.+...+..++++++..|+.++..+.... ...
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~--a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----EL--AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 344444 56778899999999999998885431 22 3466788888887788999999999998887522 122
Q ss_pred HHHHH-------hcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc----C
Q 009647 300 TSLLV-------KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS----E 368 (530)
Q Consensus 300 ~~~i~-------~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~----~ 368 (530)
..... ...++..+...| .+.+++++..|+..++.+.-..--.. ...++..|+-+.-+ +
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~----------~~~vL~~Lll~yF~p~t~~ 168 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD----------PPKVLSRLLLLYFNPSTED 168 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc----------HHHHHHHHHHHHcCcccCC
Confidence 21111 234566777777 46688899999999999875542221 03466666555533 2
Q ss_pred cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC
Q 009647 369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS 410 (530)
Q Consensus 369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~ 410 (530)
+..+|..-.+.+-..+..++.+ |..+...++|.+-.+....
T Consensus 169 ~~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 169 NQRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred cHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 4578888888888888877655 4555555778877777543
No 216
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.37 E-value=1.5 Score=47.13 Aligned_cols=200 Identities=19% Similarity=0.222 Sum_probs=123.9
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC------------------ChhHHHHHHHHHHHhhcCCCCCch
Q 009647 196 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN------------------KGSTVRTAAWALSNLIKGPDPKPA 257 (530)
Q Consensus 196 ~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~------------------~~~~~~~a~~~L~nL~~~~~~~~~ 257 (530)
+.+-...|.++..+ +-..+..+.++|.|+..+.+. ..+......|+|.-+.+...++..
T Consensus 290 Ks~Flk~Ls~~ip~---fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~ 366 (700)
T KOG2137|consen 290 KSSFLKGLSKLIPT---FPARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQA 366 (700)
T ss_pred HHHHHHHHHHhhcc---CCHHHHHHhhhhHHHHHhccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccc
Confidence 34444455555533 233455555666666655431 234455667777766653323221
Q ss_pred hhHH---------------HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCc
Q 009647 258 TELI---------------KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL 322 (530)
Q Consensus 258 ~~~v---------------~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~ 322 (530)
.-++ ....++|.|..-++..+..++..++..+...++.-+ -..+..-++|++.++...+.+.
T Consensus 367 ~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 367 LLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred hhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccch
Confidence 1111 135677777777788888899999988888886433 2234566788888876567788
Q ss_pred cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647 323 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL 402 (530)
Q Consensus 323 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~ 402 (530)
.++..++-|++.++..-| ...++ ..+.++.......++.+......+..++....... +.++..+++|.
T Consensus 444 ~vkvn~L~c~~~l~q~lD--~~~v~--------d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPl 512 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLD--KAAVL--------DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPL 512 (700)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhH--------HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhh
Confidence 899999999999982211 11222 24555556666778888877777777776543332 44556678888
Q ss_pred HHHHhcCCCh
Q 009647 403 LLHLLSTSPF 412 (530)
Q Consensus 403 Li~lL~~~~~ 412 (530)
++.+...+..
T Consensus 513 li~ls~~~~L 522 (700)
T KOG2137|consen 513 LIPLSVAPSL 522 (700)
T ss_pred hhhhhhcccc
Confidence 8888766553
No 217
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.36 E-value=4.4 Score=41.37 Aligned_cols=122 Identities=12% Similarity=0.247 Sum_probs=87.9
Q ss_pred hhhHHHHhhhhc---CCccccchhcccCCCcchhhHHHHHHHhccCc---HhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 009647 326 IPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSVEHKQLIHSSEA 399 (530)
Q Consensus 326 ~~al~~L~nl~~---~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~---~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~ 399 (530)
...++++..+.. +.+...+.+++. ..++..|..++.+.. +.+-..|+-+++.+....|.....+.++|+
T Consensus 78 K~lLk~l~~~~~~~~~~~~~lrnl~D~-----s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 78 KSLLKFLSHAMQHSGGFGDRLRNLIDS-----SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHhccCCCcccccccccch-----hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 345566666666 233344445541 357777888888764 588899999999999998888899999999
Q ss_pred HHHHHHHhc-CC---ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC
Q 009647 400 LALLLHLLS-TS---PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD 463 (530)
Q Consensus 400 l~~Li~lL~-~~---~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d 463 (530)
++.+++.+. .+ +.++-...--+|+-+|-+. .-++.+.+.+.++.+++++.+++
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~-----------~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN-----------RGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH-----------HHHHHHHhcChHHHHHHHhCCHH
Confidence 999999887 42 3455555556777777653 33577778899999988887644
No 218
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=13 Score=38.48 Aligned_cols=138 Identities=16% Similarity=0.107 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHh-hcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH
Q 009647 191 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA 269 (530)
Q Consensus 191 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~ 269 (530)
++..++..|+.+|+|.+...|.-...... -.+..++. +....+.++.-.+..+|.-+...... ++. ....++.
T Consensus 270 p~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l--~~~~l~i 343 (533)
T KOG2032|consen 270 PSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDL--ESYLLNI 343 (533)
T ss_pred chhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cch--hhhchhH
Confidence 66789999999999999864422211111 13444554 44455788888888888777643211 111 2344443
Q ss_pred ---HHHHhccCCHHHHHHHHHHHHHhhcC---Cchh-HHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647 270 ---ILRHLKRADEELTTEVAWVVVYLSAL---SNVA-TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 270 ---L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~-~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 337 (530)
+-.+..+.+++++..+...+..|+.- ..+. ....+..+..+.+.. | ..+++. ...||+.....+.
T Consensus 344 alrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l-~d~~p~-va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 344 ALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-L-QDPNPY-VARACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-e-CCCChH-HHHHHHHHHHhcC
Confidence 44556788999999998888777742 1111 111122233333332 3 233332 3567777776653
No 219
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.03 E-value=16 Score=38.54 Aligned_cols=172 Identities=15% Similarity=0.158 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHH
Q 009647 281 LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV 360 (530)
Q Consensus 281 v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~ 360 (530)
...+.+..+.++..-+......-.-.+++..++.+...+.+......++..+..+++...--...+ ..++..
T Consensus 150 ~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl--------~~~i~v 221 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL--------SPCIEV 221 (464)
T ss_pred hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH--------HHHHHH
Confidence 344444555555543222222111234555555554344455555677777777766543222211 123444
Q ss_pred HHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC------CChhHHHHHHHHHHHhcCCCCCCCC
Q 009647 361 LVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST------SPFDIKKEVAYVLGNLCVSPTEGEG 434 (530)
Q Consensus 361 L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~------~~~~v~~eA~~aL~nl~~~~~~~~~ 434 (530)
|...... .+..+.+-.++.||+.....+ ..+..|..+|.. .+..+-+-|+..+..+..+.. ..+
T Consensus 222 LCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~-~~~ 291 (464)
T PF11864_consen 222 LCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG-EQG 291 (464)
T ss_pred HhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc-cCC
Confidence 4444322 266777778999998643221 145677777732 234566778888888887641 112
Q ss_pred CchhHHHHHHHHHhc--CChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647 435 KPKLIQEHLVSLVGR--GCLSGFIDLVRSADIEAARLGLQFMELVL 478 (530)
Q Consensus 435 ~~~~~~~~~~~l~~~--g~i~~L~~lL~~~d~~i~~~~L~~L~~il 478 (530)
.| .+--. -+++.|...++.+++.+-..++..+.+++
T Consensus 292 ~~--------~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 292 YP--------SLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cc--------eecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 22 11111 26777788888777766666666666666
No 220
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.01 E-value=1.2 Score=40.78 Aligned_cols=125 Identities=16% Similarity=0.112 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHHHh----------------cCchHHHHHHHhc-----CCCccchhhhHHHHhhh
Q 009647 277 ADEELTTEVAWVVVYLSALSNVATSLLVK----------------SGVLQLLVERLAT-----SNSLQLLIPVLRSLGNL 335 (530)
Q Consensus 277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i~~----------------~g~l~~Lv~lL~~-----~~~~~v~~~al~~L~nl 335 (530)
++......+|..|+||+.. ++....+++ ...+..|++++.. .+...-.......+.|+
T Consensus 7 ~~~~~adl~~MLLsNlT~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRS-DSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCcchHHHHHHHHHHhccc-hHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 3444566777888888873 333332322 2355677777754 12233345667778888
Q ss_pred hcCCccccchhcccCCCcchhh--HHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHh---CCcHHHHHHHhc
Q 009647 336 VAGDSSTISDVLVPGHGITDQV--IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHS---SEALALLLHLLS 408 (530)
Q Consensus 336 ~~~~~~~~~~~i~~g~~~~~~~--l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~---~~~l~~Li~lL~ 408 (530)
+.... ..+.+++. +.+. +..|+.++.+.+.--|..++.+|.|+|.....+ ..++. .+++|.|+--|.
T Consensus 86 S~~~~-gR~~~l~~----~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPE-GRQFFLDP----QRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHH-HHHHHhCc----hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 75543 33344432 2334 788888889887777788899999999987555 44443 367777766554
No 221
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.00 E-value=12 Score=39.26 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=108.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC---CccchhhhHHHHhhhhcCCccccc
Q 009647 268 DAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTIS 344 (530)
Q Consensus 268 ~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~ 344 (530)
..+..++.+++...+..+...|..++. +......++....+..|..++.+.. ...++...++++..+....- .+.
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW 163 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSW 163 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eee
Confidence 446677777777777778888888886 5667778888888888888775221 23556677888777765443 111
Q ss_pred hhcccCCCcchhhHHHHHHHhcc--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647 345 DVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422 (530)
Q Consensus 345 ~~i~~g~~~~~~~l~~L~~lL~~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL 422 (530)
..+ ...++.....+..- .+..+-..|+..+-+++.+++...+.+.+.--+..|+..++.++..++..|...+
T Consensus 164 ~~~------~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 164 ESV------SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred eec------ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 111 12355555555532 2457788899999999999877778788887899999999999999988877766
Q ss_pred HHhcCC
Q 009647 423 GNLCVS 428 (530)
Q Consensus 423 ~nl~~~ 428 (530)
..+...
T Consensus 238 nal~~~ 243 (713)
T KOG2999|consen 238 NALFRK 243 (713)
T ss_pred HHHHhh
Confidence 666554
No 222
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.97 E-value=1.4 Score=47.17 Aligned_cols=187 Identities=10% Similarity=0.109 Sum_probs=121.5
Q ss_pred HhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc
Q 009647 218 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 297 (530)
Q Consensus 218 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~ 297 (530)
++.+++|.|++++..++-.++-..+--+-+....- ..++ ....++|.+...+.+.++-++..++.++..|+..=.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L----t~~~-~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL----TKQI-LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc----CHHh-hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 56679999999999998777765555554444332 1223 367999999999999999999999999988885211
Q ss_pred hhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHH
Q 009647 298 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 377 (530)
Q Consensus 298 ~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~ 377 (530)
.+ .+....+..+.. ++......+++...-|||.|........+.-+ ..-.+.+-+.++-..-|+.+.
T Consensus 402 ~~---~Ln~Ellr~~ar-~q~d~~~~irtntticlgki~~~l~~~~R~~v---------L~~aftralkdpf~paR~a~v 468 (690)
T KOG1243|consen 402 KR---NLNGELLRYLAR-LQPDEHGGIRTNTTICLGKIAPHLAASVRKRV---------LASAFTRALKDPFVPARKAGV 468 (690)
T ss_pred hh---hhcHHHHHHHHh-hCccccCcccccceeeecccccccchhhhccc---------cchhhhhhhcCCCCCchhhhh
Confidence 11 222333444443 32345677899999999999877544332211 333455556666566788888
Q ss_pred HHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHh
Q 009647 378 WVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL 425 (530)
Q Consensus 378 ~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl 425 (530)
|++....... .+.=+...++|.++-+.-+.+..++..|-.++.-.
T Consensus 469 ~~l~at~~~~---~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 469 LALAATQEYF---DQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred HHHhhccccc---chhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 8876543321 22223445788888877777777777776666544
No 223
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.32 E-value=1.5 Score=46.77 Aligned_cols=141 Identities=15% Similarity=0.148 Sum_probs=104.9
Q ss_pred HHHHHHHhcc----CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc
Q 009647 267 LDAILRHLKR----ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST 342 (530)
Q Consensus 267 l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~ 342 (530)
-|.......+ .|++++..|.-+|..+-+-+.+.+. .-+|.++..+.++++|.++.+|.-.+|-++-.-...
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~ 968 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT 968 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence 3444444443 6889999998888887765544432 347888888878999999999999999876543332
Q ss_pred cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647 343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422 (530)
Q Consensus 343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL 422 (530)
.+ ..-..|.+-|.+.+..||+.+..++.++.-.+. +--.|-++.+..+|.+++..+...|-..+
T Consensus 969 ~d-----------e~t~yLyrrL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~ff 1032 (1128)
T COG5098 969 AD-----------EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFF 1032 (1128)
T ss_pred hH-----------HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHH
Confidence 22 244567778888899999999999999865442 22246788899999999999999998888
Q ss_pred HHhcCC
Q 009647 423 GNLCVS 428 (530)
Q Consensus 423 ~nl~~~ 428 (530)
..++..
T Consensus 1033 t~~a~K 1038 (1128)
T COG5098 1033 TQIAKK 1038 (1128)
T ss_pred HHHHhc
Confidence 888764
No 224
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.26 E-value=4.1 Score=36.10 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=83.6
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHH
Q 009647 137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV 216 (530)
Q Consensus 137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~ 216 (530)
.+++.|+++|+.+.+..+++||..+|+.|-.-++-.-+.+.+..+.-.. .. .+...........+ +...+++
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~--~~-~~~~~~~~~l~~~~-~~~~~ee---- 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSS--EN-SNDESTDISLPMMG-ISPSSEE---- 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcccc--cc-ccccchhhHHhhcc-CCCchHH----
Confidence 4678889999887778888999999999987776444433322220000 01 11222222222222 2111222
Q ss_pred HHhcCChhhhHhhcCCCC-hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009647 217 LLSQGALPPLARMMLPNK-GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 293 (530)
Q Consensus 217 ~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 293 (530)
..-..++..|++.|+++. ..-...++-++.++......+ +... ...++|.+++.++..++..++...+-|+.|.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~-cv~~--L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLK-CVPY--LPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcC-chhH--HHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333345778888888653 222334455555555332222 2333 3588999999999777788877777776664
No 225
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.69 E-value=51 Score=39.16 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=64.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHH-HHHHHHHHhcCChhhHHh
Q 009647 97 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAAGKQEETKA 175 (530)
Q Consensus 97 ~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~e-A~~~L~nia~~~~~~~~~ 175 (530)
..++..+..+-...+..|+++|..+....+..-...-++.|+..+++. + ...++| |...++...-..++....
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~D-----s-sasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLND-----S-SASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhcc-----c-hhHHHHHHHHHHhhhhhccHHHHHH
Confidence 334456678889999999999999876543222233344444444332 2 334566 566666555444443333
Q ss_pred hcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647 176 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214 (530)
Q Consensus 176 i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 214 (530)
..+ -+..-..+ +...||..++.++..||...|.+-
T Consensus 893 yY~---~i~erIlD-tgvsVRKRvIKIlrdic~e~pdf~ 927 (1692)
T KOG1020|consen 893 YYD---QIIERILD-TGVSVRKRVIKILRDICEETPDFS 927 (1692)
T ss_pred HHH---HHHhhcCC-CchhHHHHHHHHHHHHHHhCCChh
Confidence 222 22222333 568899999999999998776543
No 226
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.32 E-value=0.87 Score=50.04 Aligned_cols=171 Identities=15% Similarity=0.065 Sum_probs=92.7
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcC---CCCHHHHHHHHHHHHhhcCCCch--
Q 009647 138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGE---KSSSPVAEQCAWALGNVAGEGEE-- 212 (530)
Q Consensus 138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~---~~~~~v~~~a~~~L~nla~d~~~-- 212 (530)
.+..+.+++....-. ..+|++.|..+.......+..++ ..+..++.. ..++.++..|+-+++.+......
T Consensus 396 av~~i~~~I~~~~~~--~~ea~~~l~~l~~~~~~Pt~e~l---~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT--DDEAAQLLASLPFHVRRPTEELL---KELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp HHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HHHH---HHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCCC--HHHHHHHHHHHHhhcCCCCHHHH---HHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 344555666653322 24577777776654433334433 333344432 24567888888888877642111
Q ss_pred -------hHHHHHhcCChhhhHhhcC----CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC---C
Q 009647 213 -------FRNVLLSQGALPPLARMML----PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA---D 278 (530)
Q Consensus 213 -------~r~~~~~~g~i~~L~~lL~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~---d 278 (530)
.....+...+++.|...+. ..+..-+..++.+|+|+-. ...++.+...+... +
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------------~~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------------PESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------GGGHHHHHTTSTTSS-S-
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------------chhhHHHHhHhhhccccc
Confidence 1112223345666666655 3456778888999999952 24567777777655 5
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc-CCCccchhhhHHHHhh
Q 009647 279 EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGN 334 (530)
Q Consensus 279 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~v~~~al~~L~n 334 (530)
..++..|+|+|..++...++.+ .+.+..++.+ ..+.+++..|+..|-.
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 6899999999998876544333 2334444432 3466777777655543
No 227
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=89.23 E-value=4.2 Score=37.16 Aligned_cols=103 Identities=20% Similarity=0.159 Sum_probs=65.6
Q ss_pred chhhhHHHHhhhhcCCccccchhcccCCC----------cchhhHHHHHHHhcc------CcHhHHHHHHHHHHHHhcCC
Q 009647 324 LLIPVLRSLGNLVAGDSSTISDVLVPGHG----------ITDQVIAVLVKCLKS------EHRVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 324 v~~~al~~L~nl~~~~~~~~~~~i~~g~~----------~~~~~l~~L~~lL~~------~~~~i~~~A~~~Lsnl~~~~ 387 (530)
....++..|+|++..+.. ...+++.+.. .....+..|+.++.. ....--...+.+++|++..
T Consensus 11 ~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~- 88 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL- 88 (192)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC-
Confidence 344566667777654322 2222222111 123577888887755 2234456788999999774
Q ss_pred HHHHHHHHhC--Cc--HHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 388 VEHKQLIHSS--EA--LALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 388 ~~~~~~li~~--~~--l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
++.++.+++. +. +..|+..+++.+..-|.-++.+|.|+|..
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence 5777777754 33 66777777888766677899999999975
No 228
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.91 E-value=7.1 Score=43.27 Aligned_cols=195 Identities=20% Similarity=0.234 Sum_probs=120.4
Q ss_pred HHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchH--HHHHHHhccCC
Q 009647 202 ALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL--DAILRHLKRAD 278 (530)
Q Consensus 202 ~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l--~~L~~lL~~~d 278 (530)
+|.++..+.++....+++.|++..+..+++. ...++...+...+.|++.......... ....+ ..+-.++..-+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~---~~~~~~~~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLM---IFEFIDFSVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHHHHhhcc
Confidence 6678888889999999999999999999985 467899999999999986532222111 11122 23333444444
Q ss_pred H-HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhh
Q 009647 279 E-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV 357 (530)
Q Consensus 279 ~-~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~ 357 (530)
. +.-..++..|+.+...+++........-+-..+++.. ..... .....+.+ ..
T Consensus 571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i----------------~~~~~---~~~~~~~~-------~~ 624 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAI----------------SRWLT---SEIRVIND-------RS 624 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHh----------------hccCc---cceeehhh-------hh
Confidence 3 7778888888888764443221111111222222222 11111 11111111 12
Q ss_pred HHH-HHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC-CChhHHHHHHHHHHHh
Q 009647 358 IAV-LVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNL 425 (530)
Q Consensus 358 l~~-L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~-~~~~v~~eA~~aL~nl 425 (530)
+.+ +..++. +..+..+..|.|++.|++...++..+.+.+.|+++.+.++-.. ...+++.++...+.+.
T Consensus 625 f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 625 FFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred cchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 222 444554 3456788999999999999888888888899999988877532 2456777776666544
No 229
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.77 E-value=2.3 Score=33.75 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=62.0
Q ss_pred hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009647 224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL 303 (530)
Q Consensus 224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i 303 (530)
...+..+.++.+.++..++..|+.|...++ ........++..+...|.++|+-|-.+|..+|..|++..++
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----- 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----- 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----
Confidence 445666788889999999999999998764 11223467888889999999999999999999999975442
Q ss_pred HhcCchHHHHHHH
Q 009647 304 VKSGVLQLLVERL 316 (530)
Q Consensus 304 ~~~g~l~~Lv~lL 316 (530)
.+++.|++..
T Consensus 77 ---~vl~~L~~~y 86 (92)
T PF10363_consen 77 ---EVLPILLDEY 86 (92)
T ss_pred ---HHHHHHHHHH
Confidence 2456666554
No 230
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.64 E-value=5.4 Score=43.98 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=44.6
Q ss_pred cHhHHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHhCCcHHHHHHHhcCCC--
Q 009647 369 HRVLKKEAAWVLSNIAAGSVEHK-----------------------------------QLIHSSEALALLLHLLSTSP-- 411 (530)
Q Consensus 369 ~~~i~~~A~~~Lsnl~~~~~~~~-----------------------------------~~li~~~~l~~Li~lL~~~~-- 411 (530)
+++|++.|+.+|-|+..+.++.. ..+-..++|..|+++|+...
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 67899999999988876542110 12334578999999997643
Q ss_pred ---hhHHHHHHHHHHHhcCCC
Q 009647 412 ---FDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 412 ---~~v~~eA~~aL~nl~~~~ 429 (530)
..+|+-||.+|.-++..+
T Consensus 755 t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCc
Confidence 258999999999999864
No 231
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=88.33 E-value=10 Score=39.28 Aligned_cols=258 Identities=11% Similarity=0.064 Sum_probs=139.1
Q ss_pred HHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHH
Q 009647 116 RELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSP 194 (530)
Q Consensus 116 ~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~ 194 (530)
..|.+++......+....++...+..|+.++.++|+.+ +-..-.+|+++-+.....+..+. .....|.+++.......
T Consensus 112 ~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rE-R~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~ 190 (409)
T PF01603_consen 112 EILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRE-RDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHN 190 (409)
T ss_dssp HHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHH-HHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--S
T ss_pred HHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccccc
Confidence 34445544433222333556677888999999887543 33467788887765555666665 35566777776545555
Q ss_pred HHHHHHHHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCCC-hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHH
Q 009647 195 VAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNK-GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272 (530)
Q Consensus 195 v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~ 272 (530)
-...++..+|.+..+.. ..+..... =....|+.|.+.+. .........|+..++..+ |.. ...++..|++
T Consensus 191 gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~l------~~~~i~~llk 262 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PSL------AEPVIKGLLK 262 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGG------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-chh------HHHHHHHHHH
Confidence 66788889998886532 22221111 11234555656553 344677777777777432 321 1233344444
Q ss_pred HhccCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCC
Q 009647 273 HLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH 351 (530)
Q Consensus 273 lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~ 351 (530)
.=-..++.=..-.+.-+..+... +++....+ ...++..+...+ .+.+..|...|+....|= .....+.+.
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci-~S~h~qVAErAl~~w~n~-----~~~~li~~~-- 333 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCI-SSPHFQVAERALYFWNNE-----YFLSLISQN-- 333 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHH-TSSSHHHHHHHHGGGGSH-----HHHHHHHCT--
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHh-CCCCHHHHHHHHHHHCCH-----HHHHHHHhC--
Confidence 33334443333344444444442 22222222 233556666666 577878878887776652 111112111
Q ss_pred CcchhhHHHHHHHhc-----cCcHhHHHHHHHHHHHHhcCCHHHHHH
Q 009647 352 GITDQVIAVLVKCLK-----SEHRVLKKEAAWVLSNIAAGSVEHKQL 393 (530)
Q Consensus 352 ~~~~~~l~~L~~lL~-----~~~~~i~~~A~~~Lsnl~~~~~~~~~~ 393 (530)
...++|.+..-|. |-+..|+..|+.++.-+..-++.....
T Consensus 334 --~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 334 --SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp --HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 2346777777663 336789999999999888777654443
No 232
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.32 E-value=3.1 Score=45.26 Aligned_cols=133 Identities=11% Similarity=0.079 Sum_probs=75.4
Q ss_pred CcHHHHHhhcC---CCCHHHHHHHHHHHHhhcC----CCchhHHHHHhcCChhhhHhhcCC----CChhHHHHHHHHHHH
Q 009647 179 ALPLLIAHLGE---KSSSPVAEQCAWALGNVAG----EGEEFRNVLLSQGALPPLARMMLP----NKGSTVRTAAWALSN 247 (530)
Q Consensus 179 ~v~~L~~lL~~---~~~~~v~~~a~~~L~nla~----d~~~~r~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~n 247 (530)
.+..+..++.+ .+++.++..|+-+++++.. +.+.+-. .+....++.+...|.. .+..-+..++.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 34555566554 2356788888888877653 2221111 1223356666665542 355556777888888
Q ss_pred hhcCCCCCchhhHHHhhchHHHHHHHhc---cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh-cCCCcc
Q 009647 248 LIKGPDPKPATELIKVDGLLDAILRHLK---RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA-TSNSLQ 323 (530)
Q Consensus 248 L~~~~~~~~~~~~v~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~ 323 (530)
+... ..++.+...+. ..+..++..|+|+|..++...+...+ +.+..++. ...+++
T Consensus 473 ~g~~-------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~E 531 (574)
T smart00638 473 AGHP-------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPE 531 (574)
T ss_pred cCCh-------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChH
Confidence 8521 22334444443 22457999999999999864443332 33444443 244667
Q ss_pred chhhhHHHHh
Q 009647 324 LLIPVLRSLG 333 (530)
Q Consensus 324 v~~~al~~L~ 333 (530)
++..|+..|-
T Consensus 532 vRiaA~~~lm 541 (574)
T smart00638 532 VRMAAVLVLM 541 (574)
T ss_pred HHHHHHHHHH
Confidence 7777665554
No 233
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.10 E-value=2.3 Score=41.18 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=98.3
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccc
Q 009647 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS 344 (530)
Q Consensus 265 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~ 344 (530)
-++...+..|.++|-+...+.+..+..|+.-+.+.....+. .++..+++-+ +.....|-..|+.+++-|.+.-+..++
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888888999999999888765554444432 3455566656 355667778999999999876554443
Q ss_pred hhcccCCCcchhhHHHHHHHh----ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHH
Q 009647 345 DVLVPGHGITDQVIAVLVKCL----KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAY 420 (530)
Q Consensus 345 ~~i~~g~~~~~~~l~~L~~lL----~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~ 420 (530)
.. +..++..| ...+..|+..|-.+|..++.+-..+ .+++.|+..+++..+.++..++.
T Consensus 166 ~~-----------ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~ 227 (334)
T KOG2933|consen 166 QE-----------LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAAL 227 (334)
T ss_pred HH-----------HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhc
Confidence 32 33333333 2335689999999999887653222 25778888899999999988888
Q ss_pred HHHHhcC
Q 009647 421 VLGNLCV 427 (530)
Q Consensus 421 aL~nl~~ 427 (530)
+..+...
T Consensus 228 ~~~~~v~ 234 (334)
T KOG2933|consen 228 CFSRCVI 234 (334)
T ss_pred cccccce
Confidence 7777654
No 234
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=87.86 E-value=79 Score=39.09 Aligned_cols=207 Identities=10% Similarity=0.046 Sum_probs=111.5
Q ss_pred CCHHHHHHHHHHHHhhcCCC---chhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhch
Q 009647 191 SSSPVAEQCAWALGNVAGEG---EEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGL 266 (530)
Q Consensus 191 ~~~~v~~~a~~~L~nla~d~---~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~ 266 (530)
++..+...|+-.|..+|... ++.-..-++...+.|+..++. +.+.++++.++.|+.++..... +.+ ..+
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~-----~nI--kSG 1221 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV-----NNV--KSG 1221 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-----hhh--hcC
Confidence 45677777777777776422 233333445567888888777 4578999999999999876431 122 235
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHHHHhhcCCchhHHHHHh--cCc----hHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647 267 LDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVK--SGV----LQLLVERLATSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 267 l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~--~g~----l~~Lv~lL~~~~~~~v~~~al~~L~nl~ 336 (530)
-+.+..++. ...+.+...+..++..+... ....+.. .+. +..|.++-....+.++-..|+..|.+++
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d---~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE---YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh---hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence 555555554 44567777777777766642 1121111 223 3333333322224555556666666542
Q ss_pred c----CCc-----------------------cccchhcccCC--CcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-
Q 009647 337 A----GDS-----------------------STISDVLVPGH--GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG- 386 (530)
Q Consensus 337 ~----~~~-----------------------~~~~~~i~~g~--~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~- 386 (530)
. +.- .....+.+... ..+--++..|..+..+.++.||..|+.+|-.+...
T Consensus 1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~y 1378 (1780)
T PLN03076 1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNH 1378 (1780)
T ss_pred HHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 1 000 00000000000 01222333444456677889999999999887642
Q ss_pred ----CHHHHHHHHhCCcHHHHHHHhc
Q 009647 387 ----SVEHKQLIHSSEALALLLHLLS 408 (530)
Q Consensus 387 ----~~~~~~~li~~~~l~~Li~lL~ 408 (530)
+++.-..++. +++.++++.++
T Consensus 1379 G~~Fs~~~W~~if~-~VLFPIFd~l~ 1403 (1780)
T PLN03076 1379 GHLFSLPLWERVFE-SVLFPIFDYVR 1403 (1780)
T ss_pred hccCCHHHHHHHHH-HHHHHHHHHHH
Confidence 2233333444 46777766654
No 235
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.89 E-value=33 Score=37.93 Aligned_cols=293 Identities=10% Similarity=0.110 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCC--CHHHHHHHHHHHHhhcCCCchhHHHHHhcC----Chhh-
Q 009647 154 QLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKS--SSPVAEQCAWALGNVAGEGEEFRNVLLSQG----ALPP- 225 (530)
Q Consensus 154 ~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~--~~~v~~~a~~~L~nla~d~~~~r~~~~~~g----~i~~- 225 (530)
-++-|+-.+..++.....+...++ .-+..++.-.+..+ +..-++.|++....++......+.-+.... .+..
T Consensus 378 RRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff 457 (960)
T KOG1992|consen 378 RRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFF 457 (960)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHH
Confidence 345577777777766544444555 34555554333322 445567788888887765433332222111 1111
Q ss_pred ---hHhhcCCC---ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh
Q 009647 226 ---LARMMLPN---KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA 299 (530)
Q Consensus 226 ---L~~lL~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~ 299 (530)
++.-|.++ ...+.+...-=.....|.. ...+. ....+|.+++.|..+..-+...|+.++-.+-.-.+..
T Consensus 458 ~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q---l~~~~--lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~ 532 (960)
T KOG1992|consen 458 ANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ---LGKEH--LMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS 532 (960)
T ss_pred HHHhhHHhccCccccccchhhcccceeeeeccc---CChHH--HHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCc
Confidence 11112221 1222332222222222322 11223 2478999999999999999999999987776533322
Q ss_pred HHHHHhcCchH-----HHHHHHh--cCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc----cC
Q 009647 300 TSLLVKSGVLQ-----LLVERLA--TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK----SE 368 (530)
Q Consensus 300 ~~~i~~~g~l~-----~Lv~lL~--~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~----~~ 368 (530)
...+...+-+. .+..+.. +.+...--....+++-.+..-.++.+.... ...++.|.+++. ++
T Consensus 533 ~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~-------~~~l~~Lteiv~~v~KNP 605 (960)
T KOG1992|consen 533 NAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHA-------PELLRQLTEIVEEVSKNP 605 (960)
T ss_pred cccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhh-------hHHHHHHHHHHHHHhcCC
Confidence 22232222222 1222221 111111112334444444433333332222 134555555552 22
Q ss_pred -cH---hHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHH
Q 009647 369 -HR---VLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHL 443 (530)
Q Consensus 369 -~~---~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~ 443 (530)
+| ..--++..++-+.+.. ++..+..+ +..++|.+..+|..+-.+.--.+...++-+...+.. .-|.++..-.
T Consensus 606 s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~--~ip~~~~~l~ 682 (960)
T KOG1992|consen 606 SNPQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG--TIPDSYSPLF 682 (960)
T ss_pred CCchhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCchhHHHHH
Confidence 22 3445566666555544 33333333 445788887888765555555555666666544321 2233322222
Q ss_pred HHHH------hcCChHHHHhhhcc
Q 009647 444 VSLV------GRGCLSGFIDLVRS 461 (530)
Q Consensus 444 ~~l~------~~g~i~~L~~lL~~ 461 (530)
..+. ..|-+|+++.+|..
T Consensus 683 ~~lLsp~lW~r~gNipalvrLl~a 706 (960)
T KOG1992|consen 683 PPLLSPNLWKRSGNIPALVRLLQA 706 (960)
T ss_pred HHhcCHHHHhhcCCcHHHHHHHHH
Confidence 3332 25889999988874
No 236
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.36 E-value=2.2 Score=33.88 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=60.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 009647 182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI 261 (530)
Q Consensus 182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v 261 (530)
..+..|.+ +.+.+|-+++..|.++..... ....-..+++..+...|+++++-+.-+|+.+|+.|+... |
T Consensus 7 ~al~~L~d-p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-p------- 75 (92)
T PF10363_consen 7 EALSDLND-PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-P------- 75 (92)
T ss_pred HHHHHccC-CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-h-------
Confidence 44566666 677899999999999997554 222333467778888999999999999999999999643 1
Q ss_pred HhhchHHHHHHHhcc
Q 009647 262 KVDGLLDAILRHLKR 276 (530)
Q Consensus 262 ~~~~~l~~L~~lL~~ 276 (530)
..++|.|+....+
T Consensus 76 --~~vl~~L~~~y~~ 88 (92)
T PF10363_consen 76 --DEVLPILLDEYAD 88 (92)
T ss_pred --HHHHHHHHHHHhC
Confidence 2456666665443
No 237
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=85.96 E-value=11 Score=34.07 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=60.3
Q ss_pred CCHHHHHHHHhCCcHHHHHHHhcC---------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH-hcCChHHH
Q 009647 386 GSVEHKQLIHSSEALALLLHLLST---------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGF 455 (530)
Q Consensus 386 ~~~~~~~~li~~~~l~~Li~lL~~---------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L 455 (530)
.+..-++.+++.|++..|+++|.. .+.+...+++.+|..++... .-+..++ ..+++..+
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-----------~G~~~v~~~~~~v~~i 163 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-----------YGLEAVLSHPDSVNLI 163 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-----------HHHHHHHCSSSHHHHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-----------HHHHHHHcCcHHHHHH
Confidence 344667788888888888888732 34578889999999887642 1134444 67999999
Q ss_pred HhhhccCCHHHHHHHHHHHHHHH
Q 009647 456 IDLVRSADIEAARLGLQFMELVL 478 (530)
Q Consensus 456 ~~lL~~~d~~i~~~~L~~L~~il 478 (530)
+..|.+++..+...+++.|..++
T Consensus 164 ~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 164 ALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988775
No 238
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=60 Score=35.69 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=74.0
Q ss_pred hchHHHHHHHhcc-----CC---HHHHHHHHHHHHHhhc--CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647 264 DGLLDAILRHLKR-----AD---EELTTEVAWVVVYLSA--LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333 (530)
Q Consensus 264 ~~~l~~L~~lL~~-----~d---~~v~~~a~~~L~~L~~--~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~ 333 (530)
.|+++.++..+.. ++ +--.+.|++.++++.. ..+.-..-+.+.=+++.++..+ +++.--++..||..++
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence 5999999999841 12 2334556666666654 2222233334444556666666 4666667789999999
Q ss_pred hhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC
Q 009647 334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 334 nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~ 387 (530)
.+.. +..+..+ ...+......++.+++-.|+.+|+-++..+..+.
T Consensus 486 ~~ee---Dfkd~~i------ll~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 486 TIEE---DFKDNGI------LLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHH---hcccchH------HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 8832 2222222 1357777788888888899999999999998765
No 239
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.26 E-value=9.7 Score=42.67 Aligned_cols=193 Identities=12% Similarity=0.096 Sum_probs=120.9
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccch
Q 009647 266 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD 345 (530)
Q Consensus 266 ~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~ 345 (530)
+-+.+..-+.+++-.-+..++..+.-...... ..-.....|.+-.++.......+..+...|+.+|.-|+..-......
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 33444455556666677777777766665322 11111123444445554444557777888999999998765444333
Q ss_pred hcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHh
Q 009647 346 VLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL 425 (530)
Q Consensus 346 ~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl 425 (530)
+. .+++|.|+.-+......++..+..++-.+...+. -..+.+.+...+.++++.++.+....+...
T Consensus 333 ~~-------~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 333 YA-------KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred HH-------HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 32 3578888888887777777666555555444221 112577888899999999998866666555
Q ss_pred cCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647 426 CVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482 (530)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~ 482 (530)
...... .+ ...---.++++.++....+.+.++...+++++..+++...
T Consensus 399 ~~~~~~--~~-------~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 399 LRKLGP--KT-------VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HhhcCC--cC-------cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 543210 11 0111124577888888888999999999999988876543
No 240
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.22 E-value=18 Score=39.12 Aligned_cols=192 Identities=10% Similarity=0.039 Sum_probs=110.9
Q ss_pred HHHHHHhcCCCccchhhhHHHHhhhhcCCcccc-----chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647 311 LLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI-----SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385 (530)
Q Consensus 311 ~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~-----~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~ 385 (530)
.|.+-| +..+..|+.+|+..+-++..-.+..+ +.+++ .-...|..+|.++-+.||..|..-++.++.
T Consensus 178 ~l~R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-------kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s 249 (1005)
T KOG1949|consen 178 ILWRGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-------KQFEELYSLLEDPYPMVRSTAILGVCKITS 249 (1005)
T ss_pred HHHHhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-------HHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 344445 46788999999999888875433322 33332 456678899999999999999888877754
Q ss_pred CCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCH
Q 009647 386 GSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADI 464 (530)
Q Consensus 386 ~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~ 464 (530)
..=+.+-.-+-..++..+++-+ .+...+||......|..+..++. ...+.+ -++|++-..|..+..
T Consensus 250 ~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~------------sh~~le-~~Lpal~~~l~D~se 316 (1005)
T KOG1949|consen 250 KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL------------SHPLLE-QLLPALRYSLHDNSE 316 (1005)
T ss_pred HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc------------chhHHH-HHHHhcchhhhccch
Confidence 2211111100011333444433 33445788877777877776531 111111 134566666767777
Q ss_pred HHHHHHHHHHHHHHccCCCCcchhHHHHhchHH-HHHHHhcCCcHHHHHHHHHHHHhhcCCCCCC
Q 009647 465 EAARLGLQFMELVLRGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNMANGLVDKYFGEDYGL 528 (530)
Q Consensus 465 ~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~-~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~ 528 (530)
.+.....+.|..|= +..+.+ +...=-.+ .|..|-...-+--+..+.-|+..||+..-++
T Consensus 317 ~VRvA~vd~ll~ik----~vra~~-f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~e 376 (1005)
T KOG1949|consen 317 KVRVAFVDMLLKIK----AVRAAK-FWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPE 376 (1005)
T ss_pred hHHHHHHHHHHHHH----hhhhhh-hhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcH
Confidence 77777767666552 111111 12222223 3444555555556677888999999887644
No 241
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.14 E-value=2.7 Score=40.78 Aligned_cols=139 Identities=12% Similarity=0.137 Sum_probs=89.5
Q ss_pred hHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 009647 226 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK 305 (530)
Q Consensus 226 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~ 305 (530)
.+..|.+.+......++-.+..|+..+ ++..... ...++..+++-+.+....|-..||.++..+...-+..+...
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~--L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~-- 167 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPM--LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE-- 167 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHH--HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344455555566666666666666553 2221112 23566667777777778899999999999887544444442
Q ss_pred cCchHHHHHHHh-cC--CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647 306 SGVLQLLVERLA-TS--NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN 382 (530)
Q Consensus 306 ~g~l~~Lv~lL~-~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn 382 (530)
+..++..|. +. ++.-++..|.++|-.++.....+ .+++.|...+.+.++.++..++.+.++
T Consensus 168 ---ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------------~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 168 ---LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------------KLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred ---HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence 233333332 21 23346788999999888654322 478888889999999999999988877
Q ss_pred Hhc
Q 009647 383 IAA 385 (530)
Q Consensus 383 l~~ 385 (530)
..-
T Consensus 232 ~v~ 234 (334)
T KOG2933|consen 232 CVI 234 (334)
T ss_pred cce
Confidence 643
No 242
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=84.89 E-value=32 Score=37.44 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=108.4
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhh---hcCC
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL---VAGD 339 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl---~~~~ 339 (530)
...++|.|+..+.+. ..+-..+-.+.+++.+.+. .-....+++.|...+......++ .+..+-|+ ....
T Consensus 310 ~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~---~~~~~~~~p~l~pi~~~~~~~~~---~l~i~e~mdlL~~Kt 381 (700)
T KOG2137|consen 310 FQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQ---NEFGPKMLPALKPIYSASDPKQA---LLFILENMDLLKEKT 381 (700)
T ss_pred HHhhhhHHHHHhccc--cccccccchhhhhhhccch---hhhhhhhhHHHHHHhccCCcccc---hhhHHhhHHHHHhhC
Confidence 467888888777432 3333333444445443221 12234567777777642222222 22223332 1111
Q ss_pred ccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHH
Q 009647 340 SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEV 418 (530)
Q Consensus 340 ~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA 418 (530)
+ ...+ ...++|.|..-+++.+..++..++..+...+..-+ -..+..-++|.|-++. .+.+..++..+
T Consensus 382 ~--~e~~-------~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~ 449 (700)
T KOG2137|consen 382 P--PEEV-------KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNV 449 (700)
T ss_pred C--hHHH-------HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHH
Confidence 1 1112 24689999999999999999999999988865432 2234445788888874 56778899999
Q ss_pred HHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647 419 AYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR 479 (530)
Q Consensus 419 ~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~ 479 (530)
+-++.-+... +....-...+.++....+..|+.++...+.+.+++..
T Consensus 450 L~c~~~l~q~--------------lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 450 LPCLAGLIQR--------------LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred HHHHHHHHHH--------------HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 9888877532 1111112234455555667899999888888877654
No 243
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.54 E-value=18 Score=32.92 Aligned_cols=74 Identities=8% Similarity=0.033 Sum_probs=58.2
Q ss_pred ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHH
Q 009647 222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301 (530)
Q Consensus 222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~ 301 (530)
.++.++++..+++..++..|+..+..+.+..--. -...+|.++.|..++++.++..|...+..+.+..+..+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-------P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVN-------PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-------hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 4667777777889999999999998887642111 136789999999999999999999999999875554444
Q ss_pred H
Q 009647 302 L 302 (530)
Q Consensus 302 ~ 302 (530)
.
T Consensus 82 ~ 82 (187)
T PF12830_consen 82 S 82 (187)
T ss_pred H
Confidence 3
No 244
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.22 E-value=2 Score=40.19 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhc--C-------CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHHHhcCCh
Q 009647 154 QLLEAAWCLTNIAAGKQEETKALL--P-------ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGAL 223 (530)
Q Consensus 154 ~~~eA~~~L~nia~~~~~~~~~i~--~-------~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i 223 (530)
-|+-|..+|..++-.+. +.+.++ + .+..|+++|....++-.||-|+-.|.|+|..+. -+|....+.+.|
T Consensus 140 PqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 46789999999996543 344444 1 567788888887889999999999999997555 455677788999
Q ss_pred hhhHhhcCCC
Q 009647 224 PPLARMMLPN 233 (530)
Q Consensus 224 ~~L~~lL~~~ 233 (530)
..|+.++...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999654
No 245
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=84.09 E-value=16 Score=38.39 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=107.2
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCCh----hHHHHHHHHHHHhcCCCCC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF----DIKKEVAYVLGNLCVSPTE 431 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~----~v~~eA~~aL~nl~~~~~~ 431 (530)
.....+..++.+++..-+.+|...+..+.+ ....+..++...++..|..++.+++. ++..-.+.+++.+..++..
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 355677888888888888889999988866 45788899999999999999987654 4555566666665433210
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHH
Q 009647 432 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENED 509 (530)
Q Consensus 432 ~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~ 509 (530)
+ ...+...++.....+... -+..+...+|..|+++..... .....+.+.--++.|.......|..
T Consensus 162 s-----------W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~--~~~~~v~eev~i~~li~hlq~~n~~ 228 (713)
T KOG2999|consen 162 S-----------WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSD--TLRQLVAEEVPIETLIRHLQVSNQR 228 (713)
T ss_pred e-----------eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh--HHHHHHHhcCcHHHHHHHHHhcchH
Confidence 0 011122233333333322 345667788888888764432 2356666777777777667778899
Q ss_pred HHHHHHHHHHhhcCCCCC
Q 009647 510 LRNMANGLVDKYFGEDYG 527 (530)
Q Consensus 510 i~~~A~~il~~~f~~~~~ 527 (530)
++..|..++..+|-.-++
T Consensus 229 i~~~aial~nal~~~a~~ 246 (713)
T KOG2999|consen 229 IQTCAIALLNALFRKAPD 246 (713)
T ss_pred HHHHHHHHHHHHHhhCCh
Confidence 999999999999876544
No 246
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=83.65 E-value=47 Score=33.82 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=83.1
Q ss_pred HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc------cCcHhHHHHH
Q 009647 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK------SEHRVLKKEA 376 (530)
Q Consensus 303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~------~~~~~i~~~A 376 (530)
+.+..-.+.+-+-+..++...-+..|+..|..++..-..+...+ +...+..+|. +.++.-+..|
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----------~~~~i~~~l~~y~~~~~~~w~~KD~A 275 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----------LMQYIQQLLQQYASNPSNNWRSKDGA 275 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-TTT-HHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----------HHHHHHHHHHHHhhCCcccHHHHHHH
Confidence 34445555555555333344556788888888875543332222 2223333343 3455777888
Q ss_pred HHHHHHHhcCCHH------------HHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 009647 377 AWVLSNIAAGSVE------------HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV 444 (530)
Q Consensus 377 ~~~Lsnl~~~~~~------------~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~ 444 (530)
+..++.|+..... .+..+....++|.|. --.+..+-++..|++.+..+-..- | .++.
T Consensus 276 l~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l------~---~~~l- 344 (370)
T PF08506_consen 276 LYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL------P---KEQL- 344 (370)
T ss_dssp HHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----------HHHH-
T ss_pred HHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC------C---HHHH-
Confidence 9999999865421 334455555677665 222455778999999999886531 1 1222
Q ss_pred HHHhcCChHHHHhhhccCCHHHHHHHHHH
Q 009647 445 SLVGRGCLSGFIDLVRSADIEAARLGLQF 473 (530)
Q Consensus 445 ~l~~~g~i~~L~~lL~~~d~~i~~~~L~~ 473 (530)
.++++.+++.|.+++.-+...|..+
T Consensus 345 ----~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 345 ----LQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp ----HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCCCcchhhhhhhh
Confidence 2478999999998887776665544
No 247
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.55 E-value=1e+02 Score=36.66 Aligned_cols=148 Identities=11% Similarity=0.121 Sum_probs=95.1
Q ss_pred cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647 306 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385 (530)
Q Consensus 306 ~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~ 385 (530)
.|++|.|..-|. +.+..++..|...+|.+......+.. +. .......++.-+...+..||.++.....++..
T Consensus 258 ~~vip~l~~eL~-se~~~~Rl~a~~lvg~~~~~~~~~l~---~~----~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 258 LAVIPQLEFELL-SEQEEVRLKAVKLVGRMFSDKDSQLS---ET----YDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred HHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhcchhhhc---cc----chHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 478899988884 78889999999999999977665443 11 23466677777778889999999999999877
Q ss_pred CCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHH
Q 009647 386 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE 465 (530)
Q Consensus 386 ~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~ 465 (530)
.++........ .-.+- ..+.|++++.....++ +.|.. ....-.++.. .+..+-+.+..+-..
T Consensus 330 ~~~~~~~~~~~---~~~l~--~~~~D~~~rir~~v~i-~~~~v-----------~~~~l~~~~~-ll~~~~eR~rDKk~~ 391 (1266)
T KOG1525|consen 330 NNPSIAKASTI---LLALR--ERDLDEDVRVRTQVVI-VACDV-----------MKFKLVYIPL-LLKLVAERLRDKKIK 391 (1266)
T ss_pred cCchhhhHHHH---HHHHH--hhcCChhhhheeeEEE-EEeeh-----------hHhhhhhhHH-HHHHHHHHHhhhhHH
Confidence 76654443221 11222 2334444443332222 22211 0111222333 666667777778889
Q ss_pred HHHHHHHHHHHHHc
Q 009647 466 AARLGLQFMELVLR 479 (530)
Q Consensus 466 i~~~~L~~L~~il~ 479 (530)
+...|+..|..+.+
T Consensus 392 VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 392 VRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888776
No 248
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.32 E-value=11 Score=33.51 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=78.3
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC--CcHHHHHHHhcCCC-hhHHHHHHHHHHHhcCCCCCC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS--EALALLLHLLSTSP-FDIKKEVAYVLGNLCVSPTEG 432 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~--~~l~~Li~lL~~~~-~~v~~eA~~aL~nl~~~~~~~ 432 (530)
.....+..+|+++++.-|-.++..+.-++..++ -..+.++ ..+..|+.+|+.++ +.+.+.|+.+|..+....
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~--- 99 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI--- 99 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence 577788999999888888888877777765442 1223333 24778888887654 567888999999987642
Q ss_pred CCCchhHHHHHHHHHh---cCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC
Q 009647 433 EGKPKLIQEHLVSLVG---RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN 483 (530)
Q Consensus 433 ~~~~~~~~~~~~~l~~---~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~ 483 (530)
.+.| +-.+.+.. .++++.++.+++. ......++++|..++...+.
T Consensus 100 ~~~p----~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 100 RGKP----TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred cCCC----chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 2343 22333332 2456666776654 56677889999999876543
No 249
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.17 E-value=1.2 Score=41.53 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHhcCc-------hHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCC
Q 009647 280 ELTTEVAWVVVYLSALSNVATSLLVKSGV-------LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG 352 (530)
Q Consensus 280 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~-------l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~ 352 (530)
.-+.-++.+|+.|+- .+.+.+.++.++- +..|+++|....+...++-|+-.|.|++.++......+..
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~---- 213 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAM---- 213 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHH----
Confidence 357788999999986 4455666665553 4456666655567778899999999999988766544432
Q ss_pred cchhhHHHHHHHhccCcH
Q 009647 353 ITDQVIAVLVKCLKSEHR 370 (530)
Q Consensus 353 ~~~~~l~~L~~lL~~~~~ 370 (530)
+.+.+..|+.++.....
T Consensus 214 -q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 214 -QKPCISHLIAFIEDAEQ 230 (257)
T ss_pred -hhchHHHHHHHHHHHHH
Confidence 46789999999876544
No 250
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=83.12 E-value=2.9 Score=35.00 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=53.2
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcch-hHHHHhchHHHHHHHhcC--------CcHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGT-KLVEREDGIDAMERFQFH--------ENEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~-~~i~~~ggl~~L~~L~~~--------~~~~i~~~A~~il~~~ 521 (530)
++..|.+=|+.+++.+..++|.+|..++..+.. .+. .+-..+..+..+.+.... .++.|+..|.++++-.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~-~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS-DFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH-HHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 456677778888888889999999999987753 222 233344455555555542 2568999999999999
Q ss_pred cCCC
Q 009647 522 FGED 525 (530)
Q Consensus 522 f~~~ 525 (530)
|+++
T Consensus 118 f~~~ 121 (122)
T cd03572 118 FSYS 121 (122)
T ss_pred hccC
Confidence 9875
No 251
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.52 E-value=12 Score=40.48 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHH
Q 009647 235 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE 314 (530)
Q Consensus 235 ~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~ 314 (530)
..+.+-++..+..|-..+ ...++ ..+.+..+++...++|..|+..+|..|.-+.+. ...+...+-.++...+..
T Consensus 60 dRIl~fla~fv~sl~q~d---~e~Dl--V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~ 133 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLD---KEEDL--VAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLI 133 (892)
T ss_pred HHHHHHHHHHHHhhhccC---chhhH--HHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHH
Confidence 345555555555554322 22344 458888888888899999999999999999873 233333344456666666
Q ss_pred HHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHH
Q 009647 315 RLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLS 381 (530)
Q Consensus 315 lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Ls 381 (530)
.+ ....+.|+..|+.+|+.+-..+.+.. ..+...+..++++ +++.||+.|+-.|+
T Consensus 134 Rl-~Drep~VRiqAv~aLsrlQ~d~~dee-----------~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 134 RL-KDREPNVRIQAVLALSRLQGDPKDEE-----------CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HH-hccCchHHHHHHHHHHHHhcCCCCCc-----------ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 66 46788999999999999863322211 1355666777754 56789988765544
No 252
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.62 E-value=48 Score=31.33 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHH
Q 009647 139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL 218 (530)
Q Consensus 139 v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~ 218 (530)
+|.|+.-+....++..+.....+|..++..+...... .+..+..+... ++.+.+.-+...+..+-..++.. .
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~---v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~--f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP---VLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRH--F-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH---HHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchH--H--
Confidence 5666665666666788888999999999776212222 33444444444 55555556666666665433211 1
Q ss_pred hcCChhhhHhhc--------C--CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHHH
Q 009647 219 SQGALPPLARMM--------L--PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAW 287 (530)
Q Consensus 219 ~~g~i~~L~~lL--------~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~~ 287 (530)
+.+..++..+ . +...+.....++++..+|... |. .-...++.+..++ .+.++.+...++.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~------~g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-PD------HGVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-hh------hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3344444431 1 113455566678888999754 32 1346788888888 7788889999999
Q ss_pred HHHHhhc
Q 009647 288 VVVYLSA 294 (530)
Q Consensus 288 ~L~~L~~ 294 (530)
+|..|+.
T Consensus 145 ~l~~Lc~ 151 (234)
T PF12530_consen 145 ALAPLCE 151 (234)
T ss_pred HHHHHHH
Confidence 9999994
No 253
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=81.10 E-value=6.6 Score=34.06 Aligned_cols=70 Identities=10% Similarity=0.193 Sum_probs=54.6
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC-CcHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~-~~~~i~~~A~~il~~~ 521 (530)
++..|..-|.++++.++..+|..|+.+.+.|+. .+...|-.-..++.|..+... .+++|+++...+|+.+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W 108 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK-RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 455667778889999999999999999987754 234445555677777777666 7899999999999887
No 254
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=80.47 E-value=17 Score=32.94 Aligned_cols=112 Identities=19% Similarity=0.137 Sum_probs=72.7
Q ss_pred HHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCC-------------------cHHHHHHHhcC-CChhHHHHHH
Q 009647 360 VLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSE-------------------ALALLLHLLST-SPFDIKKEVA 419 (530)
Q Consensus 360 ~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~-------------------~l~~Li~lL~~-~~~~v~~eA~ 419 (530)
.+.-++.++++.+|..|+.+++.+-.|+.......-+.+ +-..|+..|+. .+..+....+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344456778899999999999999988766554443221 23445555644 4566777888
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647 420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~ 480 (530)
.++..++.+ +|+ +.++.=.=..++..+..++...|+.+...++-++..++..
T Consensus 124 K~la~Lv~~------tPY---~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 124 KCLAVLVQA------TPY---HRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHcc------CCh---hhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 888888864 342 2221101112344555667778999988888888887643
No 255
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.33 E-value=1.2e+02 Score=37.25 Aligned_cols=281 Identities=15% Similarity=0.103 Sum_probs=131.6
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
...++..|.. +++..+-.+..+++.++...++.. +-.+..+....-+.+. ++-.+-.-..+++.+-+....-...
T Consensus 878 ~~l~~~sl~~-~~p~~rc~~~ea~arLaq~v~~~~---f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLIN-PNPKLRCAAAEALARLAQVVGSAP---FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhcc-CChHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 3344444444 566666677777777775322111 1111223333333333 3333333344444444432111111
Q ss_pred hHHHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647 259 ELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 337 (530)
+. ....+..++.+-.++ +|.|+..++.+++++++.........++ ..+..+..+|.. .+........+++....
T Consensus 954 qh--l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls--~p~~~~ev~q~~~R~~~ 1028 (2067)
T KOG1822|consen 954 QH--LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLS--VPTSHVEVHQCYNRCFN 1028 (2067)
T ss_pred hh--cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCC--CCcchhhhhhhhccccc
Confidence 12 235566667666644 5699999999999999854444332222 223334444432 22222333333333333
Q ss_pred CCccccchhccc-CCC------------cchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH
Q 009647 338 GDSSTISDVLVP-GHG------------ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL 404 (530)
Q Consensus 338 ~~~~~~~~~i~~-g~~------------~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li 404 (530)
+++.. ..++.+ |.+ ...-.+-...-++.++++.++.+|..++.++-.-.+.+... .-+++.|.
T Consensus 1029 ~~~~~-~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~ 1104 (2067)
T KOG1822|consen 1029 GDDDE-DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLC 1104 (2067)
T ss_pred cchhH-HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHH
Confidence 22211 111111 110 01223444455567788899999999999886544332211 12455666
Q ss_pred HHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH--------------H-hcCChHHHHhhhcc-CCHHHHH
Q 009647 405 HLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL--------------V-GRGCLSGFIDLVRS-ADIEAAR 468 (530)
Q Consensus 405 ~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l--------------~-~~g~i~~L~~lL~~-~d~~i~~ 468 (530)
.++.+.-.-.++.+..++.-+..... ..+-++.+.+ . +.|.=-.+..+|.. .|.+++.
T Consensus 1105 ~~l~s~~~i~r~~~~~clrql~~Re~------sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~ 1178 (2067)
T KOG1822|consen 1105 SLLSSSYLILRRASFSCLRQLVQREA------SEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLK 1178 (2067)
T ss_pred HHhcchhhhhhhhHHhhhhHHhHHHH------HHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHH
Confidence 65555443333333333333322100 0000111111 1 33444455556653 5667888
Q ss_pred HHHHHHHHHHc
Q 009647 469 LGLQFMELVLR 479 (530)
Q Consensus 469 ~~L~~L~~il~ 479 (530)
..++.+.+++.
T Consensus 1179 ~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1179 NILETLSRMLN 1189 (2067)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 256
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.05 E-value=7.7 Score=33.58 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=54.1
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc-CCcHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF-HENEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~-~~~~~i~~~A~~il~~~ 521 (530)
++..|..-|.++++.++..+|..|+.+...|+. .+...+-.-+.++.|..+.. ..++.|++++..+++.+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 112 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT-HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAW 112 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 445667778889999999999999999987753 34455556667777777664 67889999999999876
No 257
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.63 E-value=4.5 Score=44.57 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=101.8
Q ss_pred HHHHHHHHHhhcCCCch-------hHHHHHhcCChhhhHhhcCCC--------ChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647 196 AEQCAWALGNVAGEGEE-------FRNVLLSQGALPPLARMMLPN--------KGSTVRTAAWALSNLIKGPDPKPATEL 260 (530)
Q Consensus 196 ~~~a~~~L~nla~d~~~-------~r~~~~~~g~i~~L~~lL~~~--------~~~~~~~a~~~L~nL~~~~~~~~~~~~ 260 (530)
.++.+|-+-.+....+. -..-++..+++..++.+.+-+ ..++.+.|.-+|+-+..- |+...++
T Consensus 569 ~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i--P~iq~~L 646 (1516)
T KOG1832|consen 569 VEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI--PDIQKAL 646 (1516)
T ss_pred HHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec--chHHHHH
Confidence 56677777666655542 234566778888888887632 245666666666555432 3333332
Q ss_pred HHh-------hchHHHHHHHhc----cCCHHHHHHHHHHHHHhhcCCchhHHHHHhc----CchHHHHHHHhcCCCccch
Q 009647 261 IKV-------DGLLDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVKS----GVLQLLVERLATSNSLQLL 325 (530)
Q Consensus 261 v~~-------~~~l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~----g~l~~Lv~lL~~~~~~~v~ 325 (530)
+.. ..++..++..-. ..|++++..|+.++.|+.+..++.....+.. ..-+.. .|...+....+
T Consensus 647 a~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~l 724 (1516)
T KOG1832|consen 647 AHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKL 724 (1516)
T ss_pred HHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHH
Confidence 210 001222222111 2378999999999999998775543322211 001110 11111222333
Q ss_pred hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcH-----hHHHHHHHHHHHHhcCCHHHHHHHHh
Q 009647 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-----VLKKEAAWVLSNIAAGSVEHKQLIHS 396 (530)
Q Consensus 326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~-----~i~~~A~~~Lsnl~~~~~~~~~~li~ 396 (530)
...++-..+.+.+ .++|..|+.||+...| .||+-||.+|--++.++ ...|.+-.
T Consensus 725 e~~l~~mw~~Vr~----------------ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~-tVrQIltK 783 (1516)
T KOG1832|consen 725 EQVLRQMWEAVRG----------------NDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDD-TVRQILTK 783 (1516)
T ss_pred HHHHHHHHHHHhc----------------CccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc-HHHHHHHh
Confidence 4445444444443 3588899999987643 79999999999998764 55555544
No 258
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.58 E-value=9.6 Score=32.52 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=52.6
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC---CcHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH---ENEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~---~~~~i~~~A~~il~~~ 521 (530)
++..|-.-|.++++.++..+|..|..+...|+. .+...+-.-..++.|..+... .+++|++++..+++.+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~-~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGK-PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh-HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 445667778889999999999999999987754 344445555566667777654 5889999999888765
No 259
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=78.85 E-value=20 Score=34.59 Aligned_cols=107 Identities=22% Similarity=0.142 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCchhHHHHHhcC--ChhhhHhhcCCC----ChhHHHHHHHHHHHhhcC--CCCCchhhHHH
Q 009647 191 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLARMMLPN----KGSTVRTAAWALSNLIKG--PDPKPATELIK 262 (530)
Q Consensus 191 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~lL~~~----~~~~~~~a~~~L~nL~~~--~~~~~~~~~v~ 262 (530)
..+..+--++++++|+-. ++..|..+..+. .+...+..+... +..++..++..+.|++.. ..+. ..+.
T Consensus 122 ~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~-~~~~-- 197 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFS-HPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS-DEEW-- 197 (268)
T ss_dssp SSHHHHHHHHHHHHHHTT-SCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS--CCH--
T ss_pred CcHHHHHHHHHHHHHhhC-CCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC-ChHH--
Confidence 467888899999999887 567888777664 233344333333 678888888889998742 1110 1111
Q ss_pred hhchHHHHHHHhc--cCCHHHHHHHHHHHHHhhcCCchhHH
Q 009647 263 VDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATS 301 (530)
Q Consensus 263 ~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~ 301 (530)
....+..+...+. ..|+|+...++-+|++|...++...+
T Consensus 198 ~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 198 QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 2245666666433 36899999999999999975544333
No 260
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.98 E-value=16 Score=33.90 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC----CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhH
Q 009647 283 TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS----NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 358 (530)
Q Consensus 283 ~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l 358 (530)
.+++..|..++. +++....++++.+--.+..+|..+ +-+-.+..++..+|.++..++......+- ...++
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLl-----tTeiv 191 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLL-----TTEIV 191 (315)
T ss_pred HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHH-----hhhHH
Confidence 344455555554 555555556665444444555321 23446779999999999887665444432 46799
Q ss_pred HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHh--------CCcHHHHHH-HhcCCChhHHHHHHHHHHHhcC
Q 009647 359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHS--------SEALALLLH-LLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 359 ~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~--------~~~l~~Li~-lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
|.+.+++..++.--+.-|++++.-|...+ ...+.+.+ ..++..++. +...+...+-+.|+.+-..++.
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dD-vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDD-VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 99999999988877888888888886543 33333221 113333333 3355667777777777666665
No 261
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.42 E-value=74 Score=34.01 Aligned_cols=108 Identities=11% Similarity=0.096 Sum_probs=70.5
Q ss_pred ChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHh
Q 009647 169 KQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 248 (530)
Q Consensus 169 ~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL 248 (530)
+++..+.+.|.+-.+++.+.+ ++..||..++.+|.-+.- .-.--+..+..|.+..|.+-+-+..+.++..|+.+|+.+
T Consensus 82 dpeg~~~V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 82 DPEGEELVAGTFYHLLRGTES-KDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred ChhhhHHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 344434444566666676766 788999999999988774 323334666778888888777777889999999999998
Q ss_pred hcCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHH
Q 009647 249 IKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEV 285 (530)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a 285 (530)
-.....+ +......|..+++ ++..+|+..|
T Consensus 160 Qe~~~ne-------en~~~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 160 QEMELNE-------ENRIVNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred HhccCCh-------HHHHHHHHHHHHhcCcHHHHHHHH
Confidence 7543222 1223334555554 3344566554
No 262
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=77.15 E-value=20 Score=31.93 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=71.5
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhc--CchHHHHHHHhcCCCccchhhhHHHHhhhhcC--
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS--GVLQLLVERLATSNSLQLLIPVLRSLGNLVAG-- 338 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~--g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~-- 338 (530)
.......+..++++++++-+-.++..+.-.++..+ .+.+.+. .-+..++..|.+.....+...++.++..|...
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34667778888998888888777777777776431 1223222 35677888886655667778888888888743
Q ss_pred -CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647 339 -DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 339 -~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~ 386 (530)
.++.+..+... .-.++++.++++++. ......++.+|..+...
T Consensus 101 ~~p~l~Rei~tp---~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 101 GKPTLTREIATP---NLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CCCchHHHHhhc---cHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 23323333211 012455566666654 45566677777766553
No 263
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=76.88 E-value=27 Score=35.56 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHh-hcC-CCCHHHHHHHHHHHHhhcCCCchh------------HHHHH
Q 009647 154 QLLEAAWCLTNIAAGKQEETKALL-PALPLLIAH-LGE-KSSSPVAEQCAWALGNVAGEGEEF------------RNVLL 218 (530)
Q Consensus 154 ~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~l-L~~-~~~~~v~~~a~~~L~nla~d~~~~------------r~~~~ 218 (530)
.+..|+..+..++....+....++ +.+..++.- -++ ..+..-++.|+..++.++...... -..++
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff 306 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFF 306 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHH
Confidence 345688888888865444433333 333333321 112 246788999999999999755321 13334
Q ss_pred hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHH
Q 009647 219 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 289 (530)
Q Consensus 219 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L 289 (530)
...++|-|. --.+..+=++..|+|.+..+-..- ..+. ..+++|.++.+|.+++.-|...|+.|+
T Consensus 307 ~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l----~~~~--l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 307 SQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL----PKEQ--LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHH--HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC----CHHH--HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 444555444 111335667788889888886431 2333 358999999999999988999888775
No 264
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=76.60 E-value=41 Score=33.73 Aligned_cols=231 Identities=16% Similarity=0.091 Sum_probs=112.9
Q ss_pred HHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhH
Q 009647 158 AAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGST 237 (530)
Q Consensus 158 A~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~ 237 (530)
.+.+|..+.. .+ .... ++..|..++....++......+-+|+.=+... ..-+...++..+.+-+++..+.+
T Consensus 7 ~~~~L~~l~~-~~-~s~~---i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~v 77 (339)
T PF12074_consen 7 HASMLSSLPS-SS-LSSK---IVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPV 77 (339)
T ss_pred HHHHHHhCCC-cc-hHHH---HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcH
Confidence 4455555554 22 2222 34455555555456666666666665433211 01122234455566666677778
Q ss_pred HHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc----cCCHHHH---HHHHHHHHHhhcCCchhHHH--HH----
Q 009647 238 VRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK----RADEELT---TEVAWVVVYLSALSNVATSL--LV---- 304 (530)
Q Consensus 238 ~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~----~~d~~v~---~~a~~~L~~L~~~~~~~~~~--i~---- 304 (530)
++.-+.++...+....+...... ...++|.|...+. ++-+... ..++.++.-++....+.+.. ..
T Consensus 78 R~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l 155 (339)
T PF12074_consen 78 RRAWLLCLGEALWESPNSDSLKF--AEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSL 155 (339)
T ss_pred HHHHHHHHHHHHhhccCchHHHH--HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhh
Confidence 88888888877751111111222 3478888888875 2222211 11222222222211111111 00
Q ss_pred hcCchHHHH---HHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHH
Q 009647 305 KSGVLQLLV---ERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWV 379 (530)
Q Consensus 305 ~~g~l~~Lv---~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~ 379 (530)
..+-=+.++ +.+.+-.+++-....++++..+..+.......-. ....-..++.++.+. .+.+|+.|+.+
T Consensus 156 ~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~------~~~~~~a~i~ll~s~~~~~~vR~~A~~~ 229 (339)
T PF12074_consen 156 ALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK------SSAWAQAFIYLLCSSNVSWKVRRAALSA 229 (339)
T ss_pred ccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH------HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 000000000 1111112334455677777777655443221110 013667788888887 78999999999
Q ss_pred HHHHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647 380 LSNIAAGSVEHKQLIHSSEALALLLHLLST 409 (530)
Q Consensus 380 Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~ 409 (530)
+..+....++.. ...++..+-+.+..
T Consensus 230 l~~l~~~~~~~l----~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 230 LKKLYASNPELL----SKSLISGLWKWLSS 255 (339)
T ss_pred HHHHHHhChHHH----HHHHHHHHHHHHHh
Confidence 999988876642 22244455555543
No 265
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=76.42 E-value=51 Score=29.80 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=52.5
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
-.+|.++.=|...+...+--|...+..+... ..+.+-.++. .++++|-..|.+.++++...++.+|..++..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4777777777666555566666666666544 4444444444 3888999999999999999999999999653
No 266
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.33 E-value=12 Score=32.19 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=52.7
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC------CcHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH------ENEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~------~~~~i~~~A~~il~~~ 521 (530)
++..+..-|.++++.++..+|..|+.+.+.|+. .+...|-.-+.++.|.++... .++.|+++...+++.+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE-RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 456677778899999999999999999987754 344455555666666666642 4689999999999876
No 267
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=75.15 E-value=74 Score=30.40 Aligned_cols=163 Identities=14% Similarity=0.193 Sum_probs=88.2
Q ss_pred hchHHHHHHHhccC--C-HHHH-----HHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhh
Q 009647 264 DGLLDAILRHLKRA--D-EELT-----TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 335 (530)
Q Consensus 264 ~~~l~~L~~lL~~~--d-~~v~-----~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl 335 (530)
..++|.|+.+|... + +++. .--.|+++-|+. +.+..+++.+++++. .++. ..-..+|=.
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq--------~re~~A~~~li~l~~-~~~~----~~~~l~GD~ 96 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQ--------FREERALPPLIRLFS-QDDD----FLEDLFGDF 96 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHH--------HhhhhhHHHHHHHHc-CCcc----hHHHHHcch
Confidence 45688888888631 1 1111 112344444443 234567889999884 3321 112222222
Q ss_pred hcCCccccchhcccCCCcchhhHHHHHHHhccCc--HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH-hcCCCh
Q 009647 336 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH--RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL-LSTSPF 412 (530)
Q Consensus 336 ~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~--~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l-L~~~~~ 412 (530)
++.+-..+-..+ -.|-++.|..++.+++ .-+|..|+.++..++...+..+..+++ .+..++.- +...+.
T Consensus 97 ~tE~l~~ilasv------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~~l~~~~~ 168 (249)
T PF06685_consen 97 ITEDLPRILASV------GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNYFLERNPS 168 (249)
T ss_pred hHhHHHHHHHHH------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHHHhccCch
Confidence 111111111111 1256777888887764 478999999999999887777777766 35555554 433332
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHH
Q 009647 413 DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI 456 (530)
Q Consensus 413 ~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~ 456 (530)
.+--. .+++++.- .|.++...++.+.+.|+++..+
T Consensus 169 ~~~~~---Lv~~~~dL------~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 169 FLWGS---LVADICDL------YPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred HHHHH---HHHHHHhc------CHHHhHHHHHHHHHcCCCCccc
Confidence 22222 22333321 2444456778888889888755
No 268
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=74.04 E-value=14 Score=30.45 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=48.1
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHH-----h-cCCcHHHHHHHHHHHHhhc
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-----Q-FHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L-----~-~~~~~~i~~~A~~il~~~f 522 (530)
++..|..-|.+.++.++..+|..|..+++.++. .+...+.....+..+..+ . ...+..|++++..+++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~-~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE-RFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH-HHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 456667777888999999999999999987753 233333333333333221 1 2347899999999998764
No 269
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=73.31 E-value=41 Score=29.14 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=56.9
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHH
Q 009647 399 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELV 477 (530)
Q Consensus 399 ~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~i 477 (530)
++..|..-|.++++.++..|+..|-.++.++ |. .....+.+..++..|..++.. .++.+...+++.|..-
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNC----G~-----~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W 108 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENC----GK-----RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC----CH-----HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 4566777788999999999999998888764 42 344567788999999999988 6788888888888776
Q ss_pred Hc
Q 009647 478 LR 479 (530)
Q Consensus 478 l~ 479 (530)
-.
T Consensus 109 ~~ 110 (144)
T cd03568 109 AD 110 (144)
T ss_pred HH
Confidence 43
No 270
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=73.30 E-value=84 Score=29.68 Aligned_cols=137 Identities=24% Similarity=0.196 Sum_probs=83.1
Q ss_pred HHHHH-HhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchh
Q 009647 268 DAILR-HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 346 (530)
Q Consensus 268 ~~L~~-lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 346 (530)
|.|+. +-+..+++.....+.+|..++..++.... -+++.|..+. ..+......-+++.+..+...++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLV-EQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 44443 45567788888888888888874422222 2344445444 34444444456777777776554321
Q ss_pred cccCCCcchhhHHHHHHHh--------c--cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCChhHH
Q 009647 347 LVPGHGITDQVIAVLVKCL--------K--SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIK 415 (530)
Q Consensus 347 i~~g~~~~~~~l~~L~~lL--------~--~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~ 415 (530)
+.+..++..+ . +.........+.++..++...++.-. .+++.+..+| ++.++.++
T Consensus 74 ---------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~ 139 (234)
T PF12530_consen 74 ---------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQ 139 (234)
T ss_pred ---------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHH
Confidence 2333333330 1 11234555556778888777665211 2577888888 78888899
Q ss_pred HHHHHHHHHhcC
Q 009647 416 KEVAYVLGNLCV 427 (530)
Q Consensus 416 ~eA~~aL~nl~~ 427 (530)
..|+.+|..+|.
T Consensus 140 alale~l~~Lc~ 151 (234)
T PF12530_consen 140 ALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 271
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=73.11 E-value=24 Score=31.16 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=59.6
Q ss_pred hchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCCchhHHH---------------------------------HHhcCch
Q 009647 264 DGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSL---------------------------------LVKSGVL 309 (530)
Q Consensus 264 ~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~---------------------------------i~~~g~l 309 (530)
...++.|+++|+.+ +.+++.+++.+|+.|-.-++-..+. .+-..++
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi 88 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVI 88 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHH
Confidence 35566666777654 4567777777777775433322221 1111233
Q ss_pred HHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHh
Q 009647 310 QLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384 (530)
Q Consensus 310 ~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~ 384 (530)
..|+..|.+..-..-...++.++-+|........-..+ ..++|.++..+.+.+...++.-.+-|+.|.
T Consensus 89 ~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-------~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 89 NALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-------PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-------HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34444443211112223455555555533222222222 357888888887766677777777777664
No 272
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.06 E-value=21 Score=37.83 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=57.2
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
|++.++++-+.+++..||+.+|..|.-+...- ..+...+-.+++..|..-+-+.++.||.+|+.+|+.+-.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 68888888889999999999999998886543 334445555778888888888888999999999998853
No 273
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=71.54 E-value=61 Score=32.99 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=84.7
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh---------cCCCccchhhhHHHHhhhh
Q 009647 267 LDAILRHLKRAD-EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA---------TSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 267 l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~---------~~~~~~v~~~al~~L~nl~ 336 (530)
-..++.+|..+- ...+..++.++.-|++.. ...+-+.....++.|+.+-. ...+..+...++.||+|++
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk-~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDK-DGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccc-cccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 344455555443 234455556666666522 12222222222333333211 1234567889999999999
Q ss_pred cCCccccchhcccCCCcchhhHHHHHHHhcc----C-cHhHHHHHHHHHHHHhcCCHHHHHH-HHhCCcHHHHHHHhcCC
Q 009647 337 AGDSSTISDVLVPGHGITDQVIAVLVKCLKS----E-HRVLKKEAAWVLSNIAAGSVEHKQL-IHSSEALALLLHLLSTS 410 (530)
Q Consensus 337 ~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~----~-~~~i~~~A~~~Lsnl~~~~~~~~~~-li~~~~l~~Li~lL~~~ 410 (530)
..+....+..++ ......+.+.+.. . ...+...=+..|.-+++-.+....+ +.+.++++.+.+.+.+.
T Consensus 126 f~Sq~~q~~~~~------~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~ 199 (532)
T KOG4464|consen 126 FHSQRAQDLFLE------NPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDK 199 (532)
T ss_pred hccHHHHHHHHh------hhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhcc
Confidence 887655444442 2233333333321 1 1244444455555555544455444 55778999999988541
Q ss_pred ---------------ChhHHHHHHHHHHHhcCCCC
Q 009647 411 ---------------PFDIKKEVAYVLGNLCVSPT 430 (530)
Q Consensus 411 ---------------~~~v~~eA~~aL~nl~~~~~ 430 (530)
+.....||+.++.|++..+.
T Consensus 200 lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 200 LGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 12456788999999987654
No 274
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=71.04 E-value=64 Score=27.39 Aligned_cols=72 Identities=10% Similarity=0.023 Sum_probs=56.7
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHH-HHHHhCCcHHHHHHHhcC---CChhHHHHHHHHHHHhcC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK-QLIHSSEALALLLHLLST---SPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~-~~li~~~~l~~Li~lL~~---~~~~v~~eA~~aL~nl~~ 427 (530)
.++..|..-|.++++.++..|+.+|--+...+...+ ..+.....+..|+.++.. .+..|+..+...+.+-..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 478888899999999999999999998887654544 445555788889999864 467899999888877654
No 275
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=70.95 E-value=1e+02 Score=29.70 Aligned_cols=178 Identities=19% Similarity=0.196 Sum_probs=101.9
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhc-------CCh--hhHHhhcCCcHHHHHhhcCCC---CHHHHHHHHHHH
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA-------GKQ--EETKALLPALPLLIAHLGEKS---SSPVAEQCAWAL 203 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~-------~~~--~~~~~i~~~v~~L~~lL~~~~---~~~v~~~a~~~L 203 (530)
.|+.+.++.=|.+....+. +...|..++. |.. .....++..+|.++.-+..+. .......++..|
T Consensus 63 ~Glq~Ll~KGL~Ss~t~e~---tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 63 EGLQPLLLKGLRSSSTYEL---TLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred hhHHHHHhCccCCCCcHHH---HHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 3455555555555443322 4445555542 111 112222368899999887733 124456677888
Q ss_pred HhhcCCCchhHHHHHhcCChhhhHhhcC-C---CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH
Q 009647 204 GNVAGEGEEFRNVLLSQGALPPLARMML-P---NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE 279 (530)
Q Consensus 204 ~nla~d~~~~r~~~~~~g~i~~L~~lL~-~---~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~ 279 (530)
+.+|... ..+.+..++.... . +..+....++..|+.-+ -|+. ....+-.|+.+|.++-+
T Consensus 140 a~~a~~~--------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f---~P~~------~~~~l~~Ll~lL~n~~~ 202 (262)
T PF14225_consen 140 AQVAEAQ--------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF---FPDH------EFQILTFLLGLLENGPP 202 (262)
T ss_pred HHHHHhC--------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---Cchh------HHHHHHHHHHHHhCCcH
Confidence 8887421 1112222332222 2 23455555555554433 1221 34667789999999989
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647 280 ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD 339 (530)
Q Consensus 280 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 339 (530)
.++..++..|..+...-+-... ...+++..+.++|. + +.-..|+..|-++.+.+
T Consensus 203 w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~-t---~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 203 WLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQ-T---DLWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhC-C---ccHHHHHHHHHHHHhhc
Confidence 9999999999998864332222 45568888888884 3 23467888887776544
No 276
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=70.80 E-value=17 Score=35.43 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=44.7
Q ss_pred ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH----HHHHhc--------cCCHHHHHHHHHHH
Q 009647 222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA----ILRHLK--------RADEELTTEVAWVV 289 (530)
Q Consensus 222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~----L~~lL~--------~~d~~v~~~a~~~L 289 (530)
++|+++.++.+.+++++..++.+|..|........ ...+...|..+. +..++. .+...+...+.-||
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-WDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh-hHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 68999999999999999999999999986532221 111223444333 333333 22234666666666
Q ss_pred HHhh
Q 009647 290 VYLS 293 (530)
Q Consensus 290 ~~L~ 293 (530)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 6663
No 277
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=70.70 E-value=1.1e+02 Score=30.05 Aligned_cols=200 Identities=17% Similarity=0.204 Sum_probs=123.4
Q ss_pred HHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc---cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHH
Q 009647 301 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS---STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 377 (530)
Q Consensus 301 ~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~---~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~ 377 (530)
+.+.++|++..++..+ ..-+.+.+..++.+..|+....- ..+..++.+ +...+..|+.--.. .++ .+
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t----~~e~~~~lv~~~~~-~~~----ia 142 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET----NPEILDNLVKGYEN-TPE----IA 142 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh----CHHHHHHHHhhhcc-chH----HH
Confidence 4567889999999888 35677788888888888864322 222223321 23444444444111 122 33
Q ss_pred HHHHHHhc---CCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC---
Q 009647 378 WVLSNIAA---GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC--- 451 (530)
Q Consensus 378 ~~Lsnl~~---~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~--- 451 (530)
.+.+|+.. ..+.....+....-+......++.+.+++...|..+...+.... ...+..+...+.
T Consensus 143 L~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~H----------k~~vaEfl~~n~d~f 212 (342)
T KOG1566|consen 143 LTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRH----------KSVVAEFLIRNYDNF 212 (342)
T ss_pred HHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHh----------HHHHHHHHHhChhhh
Confidence 33333322 23345555667777888888889999999999999888886532 122333333322
Q ss_pred -hHHHHhhhccCCHHHHHHHHHHHHHHHccCCCC-cchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHh
Q 009647 452 -LSGFIDLVRSADIEAARLGLQFMELVLRGMPNH-EGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 520 (530)
Q Consensus 452 -i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~-~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~ 520 (530)
.+.--.++.+.+.-+...++.++.-++..-++. ...+.+.....+..+-.|...+...++=.|.++-.-
T Consensus 213 f~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKv 283 (342)
T KOG1566|consen 213 FAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKV 283 (342)
T ss_pred HHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHH
Confidence 333556788888888888888888887654432 123455555667777777777777777766655443
No 278
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=70.50 E-value=70 Score=35.45 Aligned_cols=134 Identities=17% Similarity=0.103 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
.+.+|..++. |+|....-++...++..+...+.+. +|..||.+.-+.++ ..|+.+|..+-. +
T Consensus 5 ~~~~l~~~l~---s~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~l~~y~~~t~s----~~~~~il~~~~~--P- 66 (668)
T PF04388_consen 5 SITELLSLLE---SNDLSVLEEIKALLQELLNSDREPW--------LVNGLVDYYLSTNS----QRALEILVGVQE--P- 66 (668)
T ss_pred cHHHHHHHhc---CCchhhHHHHHHHHHHHhhccchHH--------HHHHHHHHHhhcCc----HHHHHHHHhcCC--c-
Confidence 3566666665 8898888888888888877665442 35566665443332 224455554421 2
Q ss_pred hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhh
Q 009647 172 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLI 249 (530)
Q Consensus 172 ~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~ 249 (530)
+-+.+ ...|-.++.. +.-|-.++..|+.+....+..-..+.+...++.|+++|.. .+..++..|+.+|.-|.
T Consensus 67 ~~K~~---~~~l~~~~~~---~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 67 HDKHL---FDKLNDYFVK---PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred cHHHH---HHHHHHHHcC---chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 22222 2233344543 4678899999999998878888899999999999999884 57788888888888776
No 279
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=70.45 E-value=29 Score=33.07 Aligned_cols=73 Identities=15% Similarity=0.315 Sum_probs=44.3
Q ss_pred hhchHHHHHHHhccCCH-------H-HHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC-CccchhhhHHHHh
Q 009647 263 VDGLLDAILRHLKRADE-------E-LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRSLG 333 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~-------~-v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~~v~~~al~~L~ 333 (530)
...++|.++++++.++. + +-.+...+|..++. |-++.|.+++.+.. +.-++..|+++|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 45788999999986653 1 22223333333433 44455555553222 4456789999999
Q ss_pred hhhcCCccccchhc
Q 009647 334 NLVAGDSSTISDVL 347 (530)
Q Consensus 334 nl~~~~~~~~~~~i 347 (530)
.++.........++
T Consensus 139 ~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 139 FLVHEGPISREEVI 152 (249)
T ss_pred HHHHcCCCCHHHHH
Confidence 99987766555554
No 280
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=70.11 E-value=1.4e+02 Score=31.24 Aligned_cols=108 Identities=22% Similarity=0.257 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh--cCCcHHHHHh
Q 009647 109 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL--LPALPLLIAH 186 (530)
Q Consensus 109 ~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i--~~~v~~L~~l 186 (530)
..++.|+++|-.+++.-..+....+.+ +.|+.+|++.+ -..+.-|+.++...+.........- -...+.|...
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 357888899988888755454433433 27889998765 2334558899999986543222211 1245667777
Q ss_pred hcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCC
Q 009647 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGA 222 (530)
Q Consensus 187 L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~ 222 (530)
|... .+..-...+..+..+-.++..+-..+.+.|.
T Consensus 177 L~~~-~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 177 LENP-EPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7742 3333344444445555555556666667776
No 281
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=69.92 E-value=39 Score=32.99 Aligned_cols=122 Identities=11% Similarity=0.161 Sum_probs=75.6
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHH-HHHHhCCcHHHHHHH----hc--------CCChhHHHHHHHHH
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK-QLIHSSEALALLLHL----LS--------TSPFDIKKEVAYVL 422 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~-~~li~~~~l~~Li~l----L~--------~~~~~v~~eA~~aL 422 (530)
-++|.+..++.+.++.+|..+|.++..+....+... ..+...|+.+.+.+. |. ..+..+-..|.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 489999999999999999999999999987643332 224556654444333 32 33455667777777
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647 423 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR 479 (530)
Q Consensus 423 ~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~ 479 (530)
..++......++.+. ......++..|++..+...-+.+.+++....++.+..++.
T Consensus 199 ~~L~~~~~~~~~~~r--~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 199 LSLLKTQENDDSNPR--STWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred HHHHHhhccCCcccc--hHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 776432100011111 2345566666666665554444457777777777766654
No 282
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=69.15 E-value=24 Score=32.74 Aligned_cols=137 Identities=17% Similarity=0.135 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-----CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHH
Q 009647 197 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-----NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL 271 (530)
Q Consensus 197 ~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~ 271 (530)
-.|+-.|.-+++ .|+.+..++++.+--.|-.+|.. +...++-.+...++.|..++++.. ..+.....++|.++
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~v-i~fLltTeivPLcL 195 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYV-IKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHH-HHHHHhhhHHHHHH
Confidence 456666666666 57888888877654444455542 235677888999999998765433 33445678999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhc--------CchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647 272 RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS--------GVLQLLVERLATSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 272 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~--------g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~ 336 (530)
+++..+++--+.-++..+..+.. ++...+.+..+ .++..++..+.+.+.......++|+--.++
T Consensus 196 rIme~gSElSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence 99998877777777777776664 44444444321 233334444434445555566666655554
No 283
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.68 E-value=36 Score=29.37 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=55.5
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHH
Q 009647 399 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELV 477 (530)
Q Consensus 399 ~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~i 477 (530)
++..|..-|.++++.++..|+..|--++.++ |. .....+.+.+++..|..++.. .++.++..+++.+..-
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNC----G~-----~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 112 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNC----GT-----HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAW 112 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHC----CH-----HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 4666777788899999999999888887654 32 234566688999999999974 6678888888888776
Q ss_pred Hc
Q 009647 478 LR 479 (530)
Q Consensus 478 l~ 479 (530)
-.
T Consensus 113 ~~ 114 (142)
T cd03569 113 AL 114 (142)
T ss_pred HH
Confidence 44
No 284
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=67.45 E-value=19 Score=30.70 Aligned_cols=70 Identities=7% Similarity=0.107 Sum_probs=52.2
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC-c-HHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-N-EDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~-~-~~i~~~A~~il~~~ 521 (530)
++..|-.-|.++++.++..+|..|..+...|+. .+...+-..+.++.|..+.... + +.|++++..++..+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~-~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS-KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 345566678889999999999999999987753 3445566667778887776543 2 34999998888766
No 285
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=67.33 E-value=1.5e+02 Score=30.21 Aligned_cols=263 Identities=13% Similarity=0.122 Sum_probs=131.0
Q ss_pred hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc----c-------CCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009647 235 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK----R-------ADEELTTEVAWVVVYLSALSNVATSLL 303 (530)
Q Consensus 235 ~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~----~-------~d~~v~~~a~~~L~~L~~~~~~~~~~i 303 (530)
.+-+..|--+|.+..+..+..+....+ ..-++.+++.+. . .|..+...|+.+|+++... ++....+
T Consensus 7 ~~~r~daY~~l~~~l~~~~~~~~~~~l--~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~~~l 83 (372)
T PF12231_consen 7 RSSRLDAYMTLNNALKAYDNLPDRQAL--QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIVSTL 83 (372)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHHhhC
Confidence 344445555566665554444433332 344555555543 2 2567899999999999862 2222222
Q ss_pred Hhc---CchHHHHHHHhcCC-CccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh----c-cCcHhHHH
Q 009647 304 VKS---GVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL----K-SEHRVLKK 374 (530)
Q Consensus 304 ~~~---g~l~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL----~-~~~~~i~~ 374 (530)
-+. -++...+..|.... +..+..+.+++|+.=-.+.. ++. ...+..++..+ + -+...+..
T Consensus 84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-----~~~------~~~~~~l~~~l~~i~~~~~s~si~~ 152 (372)
T PF12231_consen 84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-----IMT------SDRVERLLAALHNIKNRFPSKSIIS 152 (372)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-----ccc------hhhHHHHHHHHHHhhccCCchhHHH
Confidence 111 12344445553222 33455677777775322221 221 12333333333 2 34568889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC---
Q 009647 375 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC--- 451 (530)
Q Consensus 375 ~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~--- 451 (530)
+++.++.++....+.....-.+ --+|.++..+-+...+++..|...+..+...- +....+...+....+...
T Consensus 153 erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l----~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 153 ERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCL----GPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh----ChhHHHHHHHHHHhccccccc
Confidence 9999999998766544322211 15788888777777778877766665554211 000011112222333222
Q ss_pred ------hHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHH
Q 009647 452 ------LSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD 519 (530)
Q Consensus 452 ------i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~ 519 (530)
.+.|-.++.. ++.......-.++-.++... .-.....+. .-+...+...+++++.++..|...-.
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~-~~~~w~~~n--~wL~v~e~cFn~~d~~~k~~A~~aW~ 299 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS-RLDSWEHLN--EWLKVPEKCFNSSDPQVKIQAFKAWR 299 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc-hhhccHhHh--HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2335666666 33334444444444444211 000111111 12334455667788888877754433
No 286
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=66.95 E-value=1.3e+02 Score=29.16 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCc-----h-hHHHHHHHHHhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHccC
Q 009647 412 FDIKKEVAYVLGNLCVSPTEGEGKP-----K-LIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 412 ~~v~~eA~~aL~nl~~~~~~~~~~~-----~-~~~~~~~~l~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~~~ 481 (530)
..+-+-....+.|+..-++...+.. . ...+.+..|.+.|+...|+.+..+. ..+.....++++..+++..
T Consensus 134 ~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 134 NLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 4566777788888876543221110 0 0113445677889999999999886 3445558899999988643
No 287
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=66.84 E-value=88 Score=33.13 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-------CChHHHHHHHH
Q 009647 88 QTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-------SPDEQLLEAAW 160 (530)
Q Consensus 88 ~~~~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-------~~~~~~~eA~~ 160 (530)
.++..+.++.+.+. ++|+..+.+|+..|+. ++-++. .+|.|+.++... ++-.+......
T Consensus 204 ElQlYy~~It~a~~---g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~ 269 (576)
T KOG2549|consen 204 ELQLYYKEITEACT---GSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMR 269 (576)
T ss_pred HHHHHHHHHHHHHh---cCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHH
Confidence 35566778877775 6888899999987654 343422 579999998632 11222234555
Q ss_pred HHHHHhcCChhhHHhhc-CCcHHHHHhhcC---------CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhc
Q 009647 161 CLTNIAAGKQEETKALL-PALPLLIAHLGE---------KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM 230 (530)
Q Consensus 161 ~L~nia~~~~~~~~~i~-~~v~~L~~lL~~---------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL 230 (530)
..+.+..+..-.....+ ..+|.++.++-+ ..+..+|.-|+..+..||.+....-+. +...++..+.+.+
T Consensus 270 m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l 348 (576)
T KOG2549|consen 270 MVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKAL 348 (576)
T ss_pred HHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHh
Confidence 55555554432333333 478888776633 134668899999999888754433322 5555666666655
Q ss_pred CCC--ChhHHHHHHHHHHHhh
Q 009647 231 LPN--KGSTVRTAAWALSNLI 249 (530)
Q Consensus 231 ~~~--~~~~~~~a~~~L~nL~ 249 (530)
.++ ......-++..|+-|.
T Consensus 349 ~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 349 LDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred cCCCCCchhhhhHHHHHHHhh
Confidence 543 4455566666666654
No 288
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=65.98 E-value=14 Score=36.93 Aligned_cols=83 Identities=14% Similarity=0.244 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHhcC--chHHHHHHHhcCC--CccchhhhHHHHhhhhcCCccccchhcccCCCcchh
Q 009647 281 LTTEVAWVVVYLSALSNVATSLLVKSG--VLQLLVERLATSN--SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 356 (530)
Q Consensus 281 v~~~a~~~L~~L~~~~~~~~~~i~~~g--~l~~Lv~lL~~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~ 356 (530)
++..|+.++.|+.. ++.....++..+ ++..|++++..+. ...++..|+++|..|+.........+-..|..+.+|
T Consensus 238 iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 238 IRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 44555566666654 444555566655 8999999985322 345678999999999986655555444456667888
Q ss_pred hHHHHHHH
Q 009647 357 VIAVLVKC 364 (530)
Q Consensus 357 ~l~~L~~l 364 (530)
+++.+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 88887764
No 289
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=65.62 E-value=43 Score=33.79 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-----C-ChHHHHHHHHHH
Q 009647 89 TSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-----S-PDEQLLEAAWCL 162 (530)
Q Consensus 89 ~~~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-----~-~~~~~~eA~~~L 162 (530)
.+...+++.+.+. +++...+..|+..|+. ++-+ .-++|.|+.++... + +-.........+
T Consensus 176 lq~yf~~It~a~~---~~~~~~r~~aL~sL~t------D~gl-----~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v 241 (343)
T cd08050 176 LQLYFEEITEALV---GSNEEKRREALQSLRT------DPGL-----QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMV 241 (343)
T ss_pred HHHHHHHHHHHHh---CCCHHHHHHHHHHhcc------CCCc-----hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 3445556666554 5667777777776544 3333 34789999998632 1 122223344555
Q ss_pred HHHhcCChhhHHhhc-CCcHHHHHhhcC---------CCCHHHHHHHHHHHHhhcC
Q 009647 163 TNIAAGKQEETKALL-PALPLLIAHLGE---------KSSSPVAEQCAWALGNVAG 208 (530)
Q Consensus 163 ~nia~~~~~~~~~i~-~~v~~L~~lL~~---------~~~~~v~~~a~~~L~nla~ 208 (530)
..+..+..-....-+ ..+|.++.++-. ..+..+|+.|+.+|+.||.
T Consensus 242 ~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 242 RALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred HHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 555554433333333 477888876632 1346789999999998885
No 290
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=65.43 E-value=2.4e+02 Score=35.19 Aligned_cols=268 Identities=10% Similarity=0.041 Sum_probs=141.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCC--CCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHH
Q 009647 105 KGAMQKRVNALRELRRLLSRFE--FPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPL 182 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~--~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~ 182 (530)
+.+....+.|+..||++.-+.- ......-.+...+.+|..++......+++--.+.|+.++..... ..+..+-+.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nIkSGWkt 1224 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNVKSGWKS 1224 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhhhcCcHH
Confidence 3467788999999988743211 11111123456788888888765556664458889988874322 233335555
Q ss_pred HHHhhcC---CCCHHHHHHHHHHHHhhcCCCchhHHHHHh--cC----ChhhhHhhcCCC-ChhHHHHHHHHHHH----h
Q 009647 183 LIAHLGE---KSSSPVAEQCAWALGNVAGEGEEFRNVLLS--QG----ALPPLARMMLPN-KGSTVRTAAWALSN----L 248 (530)
Q Consensus 183 L~~lL~~---~~~~~v~~~a~~~L~nla~d~~~~r~~~~~--~g----~i~~L~~lL~~~-~~~~~~~a~~~L~n----L 248 (530)
++.+|.. ..++.+.+.|.-++..|+.+.-. .+.. .+ .|..|..+.+.. +..+--.|+-.|++ +
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~---~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP---YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh---hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 5555542 25688889999988888754211 1110 12 233344443322 23333333333332 2
Q ss_pred hcCCCC----------------------Cch----hhHHHhhchHHHHHHH---hccCCHHHHHHHHHHHHHhhcCC---
Q 009647 249 IKGPDP----------------------KPA----TELIKVDGLLDAILRH---LKRADEELTTEVAWVVVYLSALS--- 296 (530)
Q Consensus 249 ~~~~~~----------------------~~~----~~~v~~~~~l~~L~~l---L~~~d~~v~~~a~~~L~~L~~~~--- 296 (530)
+.+... ... ..-......+|.|..+ ...++++|+..|+.+|..+....
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 221000 000 0000013456665544 45678899999999988776521
Q ss_pred --chhHHHHHhcCchHHHHHHHhcC------C---------C----------ccchhhhHHHHhhhhcCCccccchhccc
Q 009647 297 --NVATSLLVKSGVLQLLVERLATS------N---------S----------LQLLIPVLRSLGNLVAGDSSTISDVLVP 349 (530)
Q Consensus 297 --~~~~~~i~~~g~l~~Lv~lL~~~------~---------~----------~~v~~~al~~L~nl~~~~~~~~~~~i~~ 349 (530)
++....++ .+++-++...+... . + .+....|++.+..+.+.--+....++
T Consensus 1382 Fs~~~W~~if-~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-- 1458 (1780)
T PLN03076 1382 FSLPLWERVF-ESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-- 1458 (1780)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 22333333 35666666555311 0 0 01122344444444433222222233
Q ss_pred CCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647 350 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 350 g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~ 386 (530)
.+++..|..++..++..+-+-++-+|.++...
T Consensus 1459 -----~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1459 -----KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred -----HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 24666666666777888888888888888753
No 291
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=65.34 E-value=1.2e+02 Score=29.33 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=89.3
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCC----
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTE---- 431 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~---- 431 (530)
+.+.-|..+|...++.-+ .+..+++.. .+++.+++|.|+..= ++.++--.++..|.++++-.+.
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~~---------~iv~~DLiPiL~~~~--~~~~l~~~~l~LLV~LT~P~~~~~~~ 80 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGEW---------NIVQKDLIPILISYK--DDDKLFLACLRLLVNLTWPIELLVES 80 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHHh---------chhhhhHHHHHHhcc--CchHHHHHHHHHHHHhCCCHHHhccC
Confidence 466677777776665544 444444321 134445666554432 2667888888888888872211
Q ss_pred CCCCch-------h---HHHHHHHHHhcCChHHHHhhhcc-----------CCHHHHHHHHHHHHHHHccCCCC------
Q 009647 432 GEGKPK-------L---IQEHLVSLVGRGCLSGFIDLVRS-----------ADIEAARLGLQFMELVLRGMPNH------ 484 (530)
Q Consensus 432 ~~~~~~-------~---~~~~~~~l~~~g~i~~L~~lL~~-----------~d~~i~~~~L~~L~~il~~~~~~------ 484 (530)
.+.++. . ...+...+.+.+++..++.++.. .|..++..+|-.+.|++...+..
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~ 160 (266)
T PF04821_consen 81 QPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRS 160 (266)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCccccccc
Confidence 000000 0 01222344456777877776621 23568889999999999763211
Q ss_pred --------cchhHHHHhchHHHHHHHhcCCcH-HHHHHHHHHHHhhcCC
Q 009647 485 --------EGTKLVEREDGIDAMERFQFHENE-DLRNMANGLVDKYFGE 524 (530)
Q Consensus 485 --------~~~~~i~~~ggl~~L~~L~~~~~~-~i~~~A~~il~~~f~~ 524 (530)
..-..+.+.|..+.|-.+..+.++ +-.....+|+.-.|.+
T Consensus 161 ~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 161 DEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred chhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 012466788999988888777633 3333455666555544
No 292
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=65.30 E-value=2e+02 Score=36.72 Aligned_cols=188 Identities=19% Similarity=0.257 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH
Q 009647 191 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 270 (530)
Q Consensus 191 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L 270 (530)
..-.+++.+...+|+++..++.+.-.-+....+..+-.+-.+.-.-+...+.--+..+..+. +.-...+ ....+..+
T Consensus 577 ~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~-~~~i~~~--v~~~l~~~ 653 (2341)
T KOG0891|consen 577 ENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS-PVLISPY--VGPILLVL 653 (2341)
T ss_pred hhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH-HHHHHhh--cCchHHHH
Confidence 55678899999999999876633322222221211112111111111111111111111110 0000111 23444556
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccC
Q 009647 271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPG 350 (530)
Q Consensus 271 ~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g 350 (530)
+..+..++..+...+..++..|+...........+ ..++.+.+.+.+..+..-+..++++++++........+...+
T Consensus 654 ~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~-- 730 (2341)
T KOG0891|consen 654 LPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLD-- 730 (2341)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEeccccc--
Confidence 66666777778888888888888643322323333 445555555555556666789999999999776554443333
Q ss_pred CCcchhhHHHHHHHhccCc-HhHHHHHHHHHHHHhcCC
Q 009647 351 HGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 351 ~~~~~~~l~~L~~lL~~~~-~~i~~~A~~~Lsnl~~~~ 387 (530)
..-++..|...+.... ..++.++...++++.+-.
T Consensus 731 ---~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 731 ---YPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred ---ChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 2346667777766553 478888888888776543
No 293
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=64.84 E-value=23 Score=28.47 Aligned_cols=70 Identities=9% Similarity=0.173 Sum_probs=56.5
Q ss_pred hcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHh
Q 009647 448 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 520 (530)
Q Consensus 448 ~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~ 520 (530)
....+..|+.-+..+++.....+|..|..+++.. .....+.+.|+.+.|.++..+-+++.+.....|++.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~---~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP---YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc---HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 3456677777777777777888899898887542 356788999999999999999999999999888874
No 294
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=64.38 E-value=5.9 Score=33.39 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=44.8
Q ss_pred ChHHHHhhh---ccCCHHHHHHHHHHHHHHHccCCCCcchhHH-HHhchHHHHHHHhc-CC-----cHHHHHHHHHHHHh
Q 009647 451 CLSGFIDLV---RSADIEAARLGLQFMELVLRGMPNHEGTKLV-EREDGIDAMERFQF-HE-----NEDLRNMANGLVDK 520 (530)
Q Consensus 451 ~i~~L~~lL---~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i-~~~ggl~~L~~L~~-~~-----~~~i~~~A~~il~~ 520 (530)
++..|..-| ..+++.++.++|..|..++..++.. ....+ ....-+..|..++. ++ ...|+++|..|++-
T Consensus 40 I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~-~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~l 118 (125)
T PF01417_consen 40 IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER-FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILEL 118 (125)
T ss_dssp HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH-HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHH
Confidence 455667767 5577889999999999999877541 11222 22333444444433 11 23699999999987
Q ss_pred hcCC
Q 009647 521 YFGE 524 (530)
Q Consensus 521 ~f~~ 524 (530)
.+++
T Consensus 119 L~d~ 122 (125)
T PF01417_consen 119 LNDD 122 (125)
T ss_dssp HTSH
T ss_pred hCCc
Confidence 6654
No 295
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=64.29 E-value=17 Score=25.29 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=30.3
Q ss_pred chhHHHHhchHHHHHHHhcC-CcHHHHHHHHHHHHhh
Q 009647 486 GTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKY 521 (530)
Q Consensus 486 ~~~~i~~~ggl~~L~~L~~~-~~~~i~~~A~~il~~~ 521 (530)
....+.+.+.-..+..|..| ++++|++.|..++++.
T Consensus 12 t~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 12 TVELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp SHHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred CHHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45778888888888999999 9999999999999865
No 296
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=64.25 E-value=1.3e+02 Score=32.06 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=89.8
Q ss_pred hHHHHHHHhccC--cHhHHHHHHHHH---HHHhcC-CHHHHH---HHHhCCcHHHHHH----HhcCCChhHHHHHHHHHH
Q 009647 357 VIAVLVKCLKSE--HRVLKKEAAWVL---SNIAAG-SVEHKQ---LIHSSEALALLLH----LLSTSPFDIKKEVAYVLG 423 (530)
Q Consensus 357 ~l~~L~~lL~~~--~~~i~~~A~~~L---snl~~~-~~~~~~---~li~~~~l~~Li~----lL~~~~~~v~~eA~~aL~ 423 (530)
.+..+..-|.+. +..++..++..+ .+...+ .+..++ ..+..++.|.+-. -....+...|..|-.+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 444444455555 556776666666 444443 333333 3445566665510 112345678899999999
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHH-HHH
Q 009647 424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM-ERF 502 (530)
Q Consensus 424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L-~~L 502 (530)
.++... |.. ..-+-+.+.-|.+-|...++++...+-++|..++.................+..+ ...
T Consensus 400 ~L~~~~------p~l------~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~ 467 (501)
T PF13001_consen 400 LLAKRA------PSL------FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSY 467 (501)
T ss_pred HHHccC------ccc------ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhh
Confidence 998743 211 1124567788888888888999888888888887544321110000111111111 111
Q ss_pred hcCCcHHHHHHHHHHHHhhcCCCCC
Q 009647 503 QFHENEDLRNMANGLVDKYFGEDYG 527 (530)
Q Consensus 503 ~~~~~~~i~~~A~~il~~~f~~~~~ 527 (530)
..+.....+-.|.+-..+.|+.+|-
T Consensus 468 ~~~~~~~~R~~avk~an~~fpf~d~ 492 (501)
T PF13001_consen 468 IQSEVRSCRYAAVKYANACFPFSDV 492 (501)
T ss_pred ccchhHHHHHHHHHHHHHhCCccch
Confidence 2234456667778888888988763
No 297
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.22 E-value=3.6e+02 Score=33.44 Aligned_cols=307 Identities=16% Similarity=0.143 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHhcCChhhhHhhcCC-CChhHHHHHHH------HHHHhhcCCCC-CchhhHHHh
Q 009647 193 SPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAW------ALSNLIKGPDP-KPATELIKV 263 (530)
Q Consensus 193 ~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~------~L~nL~~~~~~-~~~~~~v~~ 263 (530)
..+...|+-..|.+...- +..|..+++.+ +..+.-.++ ....++.++.- ++.+++..+.. ....+.+ .
T Consensus 798 ls~Idta~~lfg~vfp~v~~k~~~~ile~~--~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v-~ 874 (2067)
T KOG1822|consen 798 LSLIDTAVSLFGSVFPHVNNKIRLSILEHF--PESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEV-R 874 (2067)
T ss_pred hHHHHHHHHHHHHhccCccHHHHHHHHHHH--HHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHH-H
Confidence 356667777777776543 23344444432 122221111 23334433333 45566654431 1122222 2
Q ss_pred hchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc-
Q 009647 264 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST- 342 (530)
Q Consensus 264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~- 342 (530)
.-.+..++..+..+++..+-.+..++..|+...++. ..-++..+....-|.+..++-.+.--.-++|.+-......
T Consensus 875 ~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~ 951 (2067)
T KOG1822|consen 875 SSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIG 951 (2067)
T ss_pred HHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCC
Confidence 344555667777888888877888888887532211 1112345556666655556555554444555444322111
Q ss_pred -cchhcccCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCC--hhHHHH
Q 009647 343 -ISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSP--FDIKKE 417 (530)
Q Consensus 343 -~~~~i~~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~--~~v~~e 417 (530)
-|.. ...+..+..+-.++ .|.|+..++.+++-++..........++.. +..+..+| ..+. .++...
T Consensus 952 s~qhl--------~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~t-lsl~~~lLls~p~~~~ev~q~ 1022 (2067)
T KOG1822|consen 952 SGQHL--------NTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPT-LSLCLKLLLSVPTSHVEVHQC 1022 (2067)
T ss_pred Cchhc--------ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHH-HHHHHHHcCCCCcchhhhhhh
Confidence 1112 13566777776655 459999999999998765434333344432 22233333 3322 222222
Q ss_pred HHHHHH------Hhc--CCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCc-chh
Q 009647 418 VAYVLG------NLC--VSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHE-GTK 488 (530)
Q Consensus 418 A~~aL~------nl~--~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~-~~~ 488 (530)
--.++. ++. .+++- ++++. .+.... +..-++-..+=++..+|+-.+..+..++..+-.+.+... ...
T Consensus 1023 ~~R~~~~~~~~~alittlgpeL-~~N~~--~d~t~~-~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~ 1098 (2067)
T KOG1822|consen 1023 YNRCFNGDDDEDALITTLGPEL-GPNGD--KDSTST-LRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDS 1098 (2067)
T ss_pred hccccccchhHHHHHHhccccc-CCCCc--ccchhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHH
Confidence 111211 121 11111 11110 001111 111233334444555678888888888888765554311 122
Q ss_pred HHHHhch-------------HHHHHHHhcCCcHHHHHHHHHHH
Q 009647 489 LVEREDG-------------IDAMERFQFHENEDLRNMANGLV 518 (530)
Q Consensus 489 ~i~~~gg-------------l~~L~~L~~~~~~~i~~~A~~il 518 (530)
.+-+.-+ +..+.+|-..+..++.++|.-+.
T Consensus 1099 lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~ 1141 (2067)
T KOG1822|consen 1099 LVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLA 1141 (2067)
T ss_pred HHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhh
Confidence 2222222 34456666666777777776555
No 298
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=63.41 E-value=2.6e+02 Score=31.50 Aligned_cols=110 Identities=20% Similarity=0.163 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC---ChHHHHhhhccCCHHHHHHHHHHHHH
Q 009647 400 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG---CLSGFIDLVRSADIEAARLGLQFMEL 476 (530)
Q Consensus 400 l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g---~i~~L~~lL~~~d~~i~~~~L~~L~~ 476 (530)
...+...+.++++..-+....++.+++.-. .+...+ -+++-..-.+..-..+.....++|++
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~---------------~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~r 507 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLE---------------KFPPKKEKDELDPAKTQFNKSLGQITDLISQILER 507 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhcccc---------------ccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777778888888888876421 111111 11111111111111223333444444
Q ss_pred HHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q 009647 477 VLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 525 (530)
Q Consensus 477 il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~ 525 (530)
+-...+. .-..++.+.+....+-.+..|+++++|+.|..+|...|+.+
T Consensus 508 ls~~~~~-~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 508 LSDFDPS-HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred HhcCCHH-HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 4433221 22355666778888888999999999999999999999743
No 299
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=63.34 E-value=1.2e+02 Score=27.54 Aligned_cols=147 Identities=14% Similarity=0.082 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 009647 90 SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK 169 (530)
Q Consensus 90 ~~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~ 169 (530)
+..++.+.++.. +++...+..|+.-+.-.+..+=-.|. -.+|.++.+..+++ +.++..|...+..+....
T Consensus 7 Qryl~~Il~~~~---~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCL---SSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHh
Confidence 445566666554 88999999999999988876644443 37899999888755 566666889999998765
Q ss_pred hhhHHhhc-CCcHHHHHh---hcCCCCHHH---HHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--------C
Q 009647 170 QEETKALL-PALPLLIAH---LGEKSSSPV---AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--------K 234 (530)
Q Consensus 170 ~~~~~~i~-~~v~~L~~l---L~~~~~~~v---~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--------~ 234 (530)
+.-...-. .++..-..+ +........ .......+..+...+...|..++ ..|++.+... .
T Consensus 77 ~s~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl-----~~l~k~f~~~~~~~~~~~~ 151 (187)
T PF12830_consen 77 ESLVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL-----KSLLKQFDFDLTKLSSESS 151 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH-----HHHHHHHHhhccccccccc
Confidence 54433322 233333332 221111101 34445555566666667776664 3455555421 3
Q ss_pred hhHHHHHHHHHHHhhcC
Q 009647 235 GSTVRTAAWALSNLIKG 251 (530)
Q Consensus 235 ~~~~~~a~~~L~nL~~~ 251 (530)
..-.....++.-||+.-
T Consensus 152 ~~~l~~~~Fla~nLA~l 168 (187)
T PF12830_consen 152 PSDLDFLLFLAENLATL 168 (187)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 45566677777777754
No 300
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=63.10 E-value=1.8e+02 Score=29.64 Aligned_cols=303 Identities=17% Similarity=0.146 Sum_probs=160.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC--------C--ChHHHHHHHHHHHHHhcCChhhHH
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG--------S--PDEQLLEAAWCLTNIAAGKQEETK 174 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~--------~--~~~~~~eA~~~L~nia~~~~~~~~ 174 (530)
+.+...++.|-..|.+.+...++.|-...+ ..-++.++++++.+ + +..+..+|..+|+.+..... -..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l-~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~-i~~ 81 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQAL-QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPE-IVS 81 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHH-HHh
Confidence 556677788887787777765544433222 34566777766421 1 23444568888888876432 222
Q ss_pred hhcC-----CcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-----CCChhHHHHHHH
Q 009647 175 ALLP-----ALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-----PNKGSTVRTAAW 243 (530)
Q Consensus 175 ~i~~-----~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-----~~~~~~~~~a~~ 243 (530)
.+-+ .+...+..|..+ .+..+...++|+|..=- +...++....+..++..+. -+...+.....-
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 2221 455555666442 34578888899988533 3333455555555555543 235677788888
Q ss_pred HHHHhhcCCCCCchhhHHHh-hchHHHHHHHhccCCHHHHHHHHHHHHHhhc--CCchhH----HHHHh----cC-----
Q 009647 244 ALSNLIKGPDPKPATELIKV-DGLLDAILRHLKRADEELTTEVAWVVVYLSA--LSNVAT----SLLVK----SG----- 307 (530)
Q Consensus 244 ~L~nL~~~~~~~~~~~~v~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--~~~~~~----~~i~~----~g----- 307 (530)
++.+|.... |.. ++.. ...+|.++..+-+....++..|..++..+.. +.+... ....+ .+
T Consensus 157 i~~~ll~q~-p~~---M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~ 232 (372)
T PF12231_consen 157 IYKRLLSQF-PQQ---MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQL 232 (372)
T ss_pred HHHHHHHHH-HHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHH
Confidence 888887532 222 2222 2478888877777777777766555544432 111111 11111 12
Q ss_pred chHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc-ccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc-
Q 009647 308 VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA- 385 (530)
Q Consensus 308 ~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~- 385 (530)
+.++|..++. +.+.....+-+|..--..-++.. .....+ ...+...-..+.++++.+|..|..+-..++.
T Consensus 233 ~~~~L~~mi~-~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-------n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 233 YCERLKEMIK-SKDEYKLAMQIWSVVILLLGSSRLDSWEHL-------NEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred HHHHHHHHHh-CcCCcchHHHHHHHHHHHhCCchhhccHhH-------hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2233444442 32334444444433333333321 111122 2456666667788899999888876666553
Q ss_pred --CCHHHHHHHHhCCcHHHHHHHhcCC-Ch----hHHHHHHHHHHHhcC
Q 009647 386 --GSVEHKQLIHSSEALALLLHLLSTS-PF----DIKKEVAYVLGNLCV 427 (530)
Q Consensus 386 --~~~~~~~~li~~~~l~~Li~lL~~~-~~----~v~~eA~~aL~nl~~ 427 (530)
.++......+.. +..|+...++.. .. .++..+...++|+..
T Consensus 305 ~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 305 SNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred hcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 122222222222 334454445332 22 455666666666653
No 301
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=62.53 E-value=31 Score=38.88 Aligned_cols=123 Identities=15% Similarity=0.270 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChh
Q 009647 157 EAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS 236 (530)
Q Consensus 157 eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~ 236 (530)
.+.-+|.+++-.+..-.+ ..+|.|++-|..+....+|.+.+-+++-+|... ..+-...||.+...|.++++-
T Consensus 950 ~~vvTlakmcLah~~LaK---r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~Dp~~i 1021 (1529)
T KOG0413|consen 950 VGVVTLAKMCLAHDRLAK---RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLCDPSVI 1021 (1529)
T ss_pred HHHHHHHHHHhhhhHHHH---HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhcCchHH
Confidence 466678888765443322 268999999988777888999999999888632 233445789999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHHhhc--hHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009647 237 TVRTAAWALSNLIKGPDPKPATELIKVDG--LLDAILRHLKRADEELTTEVAWVVVYLSAL 295 (530)
Q Consensus 237 ~~~~a~~~L~nL~~~~~~~~~~~~v~~~~--~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 295 (530)
+++++.-.|++|.+.. ++.=.| ++..++.++ +.+++++..+-.+++.+...
T Consensus 1022 VRrqt~ilL~rLLq~~-------~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1022 VRRQTIILLARLLQFG-------IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHHhhh-------hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 9999999999998642 332223 233344444 56789999999999988764
No 302
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=61.10 E-value=35 Score=25.84 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=29.8
Q ss_pred chhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 486 GTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 486 ~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
....+.+...-..+..|..|+|++|...|..+++.+
T Consensus 34 t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 34 TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 456777776666788899999999999999999864
No 303
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=60.57 E-value=1.9e+02 Score=29.95 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=116.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-----
Q 009647 96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ----- 170 (530)
Q Consensus 96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~----- 170 (530)
+.+++..+.|+|+.+|......+.++..+.. .....+...+...|.+++..+....-..+.+..++.+..|..
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~--~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFP--NLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-T--TTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 3445556679999999988888888766543 335677777888888998755444344778899999988743
Q ss_pred hhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647 171 EETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 250 (530)
Q Consensus 171 ~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 250 (530)
++...+.. .++-|.+...-.....+-..++.-++..++..-..++ ..|++.=-..++.=....+.-+..+..
T Consensus 213 eh~~fl~~---vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~WP~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 213 EHKQFLRK---VLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHWPKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp HHHHHHHH---TTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS-SS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCchhHHHHHHHHHHHHH
Confidence 23333222 2222333322223345555555555544444332222 122222212232222233333444554
Q ss_pred CCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhc---CchHHHHHHHhc----CCCcc
Q 009647 251 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS---GVLQLLVERLAT----SNSLQ 323 (530)
Q Consensus 251 ~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~---g~l~~Lv~lL~~----~~~~~ 323 (530)
.-.+.. ...+ ...+...+...+.++.-.|.+.|+..+ +++.+-.++.. .++|.+...|.. |=+..
T Consensus 285 ~~~~~~-f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w------~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~ 356 (409)
T PF01603_consen 285 VLPPEE-FQKI-MVPLFKRLAKCISSPHFQVAERALYFW------NNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQT 356 (409)
T ss_dssp T--HHH-HHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGG------GSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTT
T ss_pred hcCHHH-HHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHH------CCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHH
Confidence 322211 1111 245666677777888888877775432 12222222222 255666666532 22455
Q ss_pred chhhhHHHHhhhhcCC
Q 009647 324 LLIPVLRSLGNLVAGD 339 (530)
Q Consensus 324 v~~~al~~L~nl~~~~ 339 (530)
++..|..++.-+...+
T Consensus 357 Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 357 VRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6666666666665444
No 304
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=60.52 E-value=2e+02 Score=29.23 Aligned_cols=93 Identities=19% Similarity=0.129 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCCh
Q 009647 93 VEELKSAVAYHG-KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGKQ 170 (530)
Q Consensus 93 ~~~l~~~l~~l~-s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~-~~~~eA~~~L~nia~~~~ 170 (530)
.+++.-++.++. +.....+..++-.|..-+. +......+...|.+..++..+.....+ ..-+-++.++.-++.+..
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~--~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA--DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC--CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 344444555444 3444567677666655433 234556677799999999999543322 222334444455554432
Q ss_pred hhHHhhc--CCcHHHHHhhc
Q 009647 171 EETKALL--PALPLLIAHLG 188 (530)
Q Consensus 171 ~~~~~i~--~~v~~L~~lL~ 188 (530)
....+. +....+++++.
T Consensus 98 -~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 98 -NMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred -chhhhhchhHHHHHHHHhc
Confidence 122211 34555566665
No 305
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=60.32 E-value=2.3e+02 Score=29.95 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=96.9
Q ss_pred hchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCC----------chhHHHHHhcCchHHHHHHHhcC--CCcc-chhhh-
Q 009647 264 DGLLDAILRHLK-RADEELTTEVAWVVVYLSALS----------NVATSLLVKSGVLQLLVERLATS--NSLQ-LLIPV- 328 (530)
Q Consensus 264 ~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~----------~~~~~~i~~~g~l~~Lv~lL~~~--~~~~-v~~~a- 328 (530)
..++..+.+++. ++.-.++.+++|.|++|--.. +.....+=+.-++...++++... ..++ +....
T Consensus 96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence 456667777776 445678999999999874211 11222333445556666666422 1222 22222
Q ss_pred HHHHhhhhcC-CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh
Q 009647 329 LRSLGNLVAG-DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 407 (530)
Q Consensus 329 l~~L~nl~~~-~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL 407 (530)
--++.-|++- ...+.-. ++ +.-++.+|+++ +-..+++..+......=+. +......++..=+.|+++.-|
T Consensus 176 kvvl~~ia~vgeS~qyPP-VN-----WaalLsPLMRl--nfGeEvq~lCLeiAvtQaq-SSqsAa~fLg~WlsPpli~sL 246 (589)
T PF11229_consen 176 KVVLKPIATVGESYQYPP-VN-----WAALLSPLMRL--NFGEEVQQLCLEIAVTQAQ-SSQSAAMFLGSWLSPPLIHSL 246 (589)
T ss_pred HHHHHHhhhcCCCCCCCC-cc-----HHHHhhHHHhc--cccHHHHHHHHHHHHHhcc-ccccHHHHHHhhcCcchhhhh
Confidence 2233444332 2222211 22 33466777776 2245677666643322222 224455566666777877766
Q ss_pred cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647 408 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR 479 (530)
Q Consensus 408 ~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~ 479 (530)
... .++.-..-+.-...+- | .++++.+++.=.+..|-..-.-.+++++..+|.+|..-++
T Consensus 247 s~~---tk~~L~~Sl~~wmkhV------s---edqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMK 306 (589)
T PF11229_consen 247 SVN---TKKYLFESLSLWMKHV------S---EDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMK 306 (589)
T ss_pred hHH---HHHHHHHHHHHHHhhC------C---HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhc
Confidence 543 3333333332222211 1 3556666554333333333334567777777777766543
No 306
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=59.83 E-value=41 Score=36.94 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=53.7
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
.++.+|..+-...-+.++..++.++.++..+.|++-+. ++..|++-|.+++.++-..|.+.|.+|..
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 46666666666666799999999999998888887554 56678999999999998889888888754
No 307
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=59.62 E-value=24 Score=30.36 Aligned_cols=70 Identities=7% Similarity=0.187 Sum_probs=48.4
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc-CCcHH---HHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF-HENED---LRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~-~~~~~---i~~~A~~il~~~ 521 (530)
++..|..-|.++++.++..+|..|..+...++. .+...+-....++.|..+.. ..... |++++..+|..+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~-~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP-RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 345566667889999999999999999887642 23344444456667776543 34433 999999888765
No 308
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=59.22 E-value=1.9e+02 Score=28.67 Aligned_cols=123 Identities=18% Similarity=0.134 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhhcCCCchhHHHHHhc-----------CChhhhHhhcC------CCChhHHHHHHHHHHHhhcCCCC
Q 009647 192 SSPVAEQCAWALGNVAGEGEEFRNVLLSQ-----------GALPPLARMML------PNKGSTVRTAAWALSNLIKGPDP 254 (530)
Q Consensus 192 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~-----------g~i~~L~~lL~------~~~~~~~~~a~~~L~nL~~~~~~ 254 (530)
..++|-.|++++.....++++.|..+++. .....|+..|- +.++.-.--|+.+|..+.++. +
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn-~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDN-P 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT--H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcC-H
Confidence 57889999999999999999999887753 11223444333 224444456777788887653 2
Q ss_pred CchhhHHH-h-----------hchHHHHHHHhc-----cCCHHHHHHHHHHHHHhhcCCchhHHHHHhc-CchHHHHHHH
Q 009647 255 KPATELIK-V-----------DGLLDAILRHLK-----RADEELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERL 316 (530)
Q Consensus 255 ~~~~~~v~-~-----------~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~-g~l~~Lv~lL 316 (530)
..++... . -..++.+..+|. ..|+.+...-+..|.....+++..+..+++. ..++.|+...
T Consensus 130 -~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 130 -EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp -HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHH
T ss_pred -HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHh
Confidence 2233221 0 124455555543 2355566666666655555556555555554 3666666654
No 309
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=58.77 E-value=8.5 Score=22.58 Aligned_cols=14 Identities=29% Similarity=0.473 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhc
Q 009647 372 LKKEAAWVLSNIAA 385 (530)
Q Consensus 372 i~~~A~~~Lsnl~~ 385 (530)
||..|+|+|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999999843
No 310
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=58.72 E-value=51 Score=24.95 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=30.0
Q ss_pred chhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 486 GTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 486 ~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
....+.+.+.-..+..|..|++++|+..|..++..+
T Consensus 36 t~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 36 TVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred CHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 456777777667789999999999999999998864
No 311
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=58.64 E-value=2.4e+02 Score=30.89 Aligned_cols=64 Identities=9% Similarity=0.197 Sum_probs=53.1
Q ss_pred hHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
.+..+-.+|..+.+.+|+..=.+++-++.++|.. +++..|-+..++++.++...|+.+++-+-.
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 4566777888899999999999999998877542 467888899999999999999999887654
No 312
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.39 E-value=1.7e+02 Score=34.81 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHccCCCCcchhHHHHh--------chHHHHHHHhcCCcHHHHHHHHHHHHh
Q 009647 465 EAARLGLQFMELVLRGMPNHEGTKLVERE--------DGIDAMERFQFHENEDLRNMANGLVDK 520 (530)
Q Consensus 465 ~i~~~~L~~L~~il~~~~~~~~~~~i~~~--------ggl~~L~~L~~~~~~~i~~~A~~il~~ 520 (530)
+..-.++.+|..++.. +.+.+... ..++.+..+..+.++++.-.|..-+++
T Consensus 1071 et~~ltisgIaklf~e-----~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qe 1129 (1610)
T KOG1848|consen 1071 ETSCLTISGIAKLFSE-----NFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQE 1129 (1610)
T ss_pred hhhhhhHHHHHHHHHH-----HHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHH
Confidence 3444567777777631 22222221 123344555667777776666544443
No 313
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=58.16 E-value=66 Score=30.94 Aligned_cols=179 Identities=18% Similarity=0.160 Sum_probs=94.5
Q ss_pred ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc----cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 009647 322 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK----SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS 397 (530)
Q Consensus 322 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~----~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~ 397 (530)
.+-+-|++..+.-++...... ..+-.. ..++...+..++. ...+..+--++++++|+..+. ...+.+.++
T Consensus 77 ~~~~fP~lDLlRl~~l~~~~~-~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~-~~~~~~~~~ 150 (268)
T PF08324_consen 77 PESRFPALDLLRLAALHPPAS-DLLASE----DSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP-PGRQLLLSH 150 (268)
T ss_dssp CCC-HHHHHHHHHHCCCHCHH-HHHHST----TTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-CCHHHHHCT
T ss_pred CccchhHHhHHHHHHhCccHH-HHHhcc----ccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-ccHHHHHhc
Confidence 345667777776665443321 111110 1112333333332 245678888999999998754 445555544
Q ss_pred -C-cHHHHHHHhcCC----ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhh-hcc-CCHHHHHH
Q 009647 398 -E-ALALLLHLLSTS----PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL-VRS-ADIEAARL 469 (530)
Q Consensus 398 -~-~l~~Li~lL~~~----~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~l-L~~-~d~~i~~~ 469 (530)
+ .+...+..+... +..++..++..+.|++........ +.+ .+ ..++..+.+. ... .|++...-
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~-~~~--~~------~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 151 FDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS-DEE--WQ------SELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp HHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS--CC--HH------HHHHHHHHHHCHCCHTSHHHHHH
T ss_pred ccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC-ChH--HH------HHHHHHHHHHhccccCCHHHHHH
Confidence 2 333343333333 678999999999999642100000 000 01 1134555663 333 78999999
Q ss_pred HHHHHHHHHccCCCCcchhHHHHhchHHHHHHHh-cCCcHHHHHHHHHH
Q 009647 470 GLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQ-FHENEDLRNMANGL 517 (530)
Q Consensus 470 ~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~-~~~~~~i~~~A~~i 517 (530)
+|-+|.+++...+ .........|....+.... ....+.+.+-+.+|
T Consensus 222 ~LvAlGtL~~~~~--~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 222 LLVALGTLLSSSD--SAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHHHCCSH--HHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHhccCh--hHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 9999999983321 1122222234444444443 45567777766554
No 314
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=58.07 E-value=86 Score=26.97 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=54.3
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc------CCHHHHHHHHH
Q 009647 399 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS------ADIEAARLGLQ 472 (530)
Q Consensus 399 ~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~------~d~~i~~~~L~ 472 (530)
++..|..-|.++++.++-.|+.+|-.++.++ |. .....+.+.+++..|+.++.. .++.+...+|+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNC----G~-----~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~ 109 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNC----GE-----RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIE 109 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc----CH-----HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHH
Confidence 4566777889999999999999998888654 43 334566788999999999963 46788888888
Q ss_pred HHHHHH
Q 009647 473 FMELVL 478 (530)
Q Consensus 473 ~L~~il 478 (530)
.+..--
T Consensus 110 li~~W~ 115 (139)
T cd03567 110 LLYSWT 115 (139)
T ss_pred HHHHHH
Confidence 776654
No 315
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=57.76 E-value=1.3e+02 Score=33.35 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=93.8
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccc
Q 009647 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS 344 (530)
Q Consensus 265 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~ 344 (530)
.-+.-|+.+|.+.|..+..++-..+..+.....+. -++..||++....++ ..|+.+|..+ .+..
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~---~~P~-- 67 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNS----QRALEILVGV---QEPH-- 67 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCc----HHHHHHHHhc---CCcc--
Confidence 34556778888888888888887777666532211 135566666543333 3455555533 1111
Q ss_pred hhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHH
Q 009647 345 DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLG 423 (530)
Q Consensus 345 ~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~ 423 (530)
+..++..|-..+.. +.-|..++..|+.++...+...-.|.+..+++.|+..|. +.+..+...|+.+|.
T Consensus 68 ---------~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Li 136 (668)
T PF04388_consen 68 ---------DKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLI 136 (668)
T ss_pred ---------HHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 12466677777764 466889999999999988899999999999999999985 456667778888888
Q ss_pred HhcC
Q 009647 424 NLCV 427 (530)
Q Consensus 424 nl~~ 427 (530)
-+.-
T Consensus 137 mlLP 140 (668)
T PF04388_consen 137 MLLP 140 (668)
T ss_pred HHhc
Confidence 7764
No 316
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=56.16 E-value=15 Score=21.87 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647 371 VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST 409 (530)
Q Consensus 371 ~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~ 409 (530)
.+|.+|+++|+++ +++. .++.|++.|.+
T Consensus 2 ~vR~~aa~aLg~~--~~~~---------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQL--GDEE---------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHc--CCHh---------HHHHHHHHhcC
Confidence 5799999999998 4444 34555555543
No 317
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=56.05 E-value=2e+02 Score=27.78 Aligned_cols=197 Identities=11% Similarity=0.059 Sum_probs=97.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh-cCCCccchhhhHHHHhhhhcCCccccchhccc
Q 009647 271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA-TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 349 (530)
Q Consensus 271 ~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~ 349 (530)
-..|.++|+.++..+..+|+.+...-+.. .....-+..|++.+. +-.+.....+++.++..++....-.....
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~--- 78 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA--- 78 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH---
Confidence 34567888899999999998887643321 122223455555443 12355566677777777774432111111
Q ss_pred CCCcchhhHHHHHHHhcc--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHHHhc
Q 009647 350 GHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 350 g~~~~~~~l~~L~~lL~~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~ 426 (530)
..++..+.+-... -....|..+...+..+........+.+ ..+.+..+++++. ..||+--..+...+..+.
T Consensus 79 -----~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 79 -----VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred -----HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 1233333332221 123667777777777765433333211 1234555666553 334443222222222221
Q ss_pred C-----------------------CCCCC---CCCchhHHHHHHH-HHh-----cCChHHHHhhhccCCHHHHHHHHHHH
Q 009647 427 V-----------------------SPTEG---EGKPKLIQEHLVS-LVG-----RGCLSGFIDLVRSADIEAARLGLQFM 474 (530)
Q Consensus 427 ~-----------------------~~~~~---~~~~~~~~~~~~~-l~~-----~g~i~~L~~lL~~~d~~i~~~~L~~L 474 (530)
. .+..+ +-+++.+...++. +.. .-++|.|++=|.+..+.++.-+|+.|
T Consensus 153 ~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL 232 (262)
T PF14500_consen 153 QEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTL 232 (262)
T ss_pred HhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 1 11000 1122111111111 111 24677788888887777777777777
Q ss_pred HHHHc
Q 009647 475 ELVLR 479 (530)
Q Consensus 475 ~~il~ 479 (530)
...+.
T Consensus 233 ~~c~~ 237 (262)
T PF14500_consen 233 KACIE 237 (262)
T ss_pred HHHHH
Confidence 76654
No 318
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=55.72 E-value=2.7e+02 Score=31.34 Aligned_cols=145 Identities=13% Similarity=0.127 Sum_probs=87.6
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchh-H
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF-R 214 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~-r 214 (530)
..+...+...+..++ ..+-.....++.++++-..-.......-.+.-..-... .-..+.+....+|++++.-+++. .
T Consensus 440 ~~lW~~l~~~~~~~~-~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~-~~~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 440 PNLWKALLKSLDSDN-PDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNK-SLGQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHHHhhcCCC-hHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 445556666666444 44545566777777643211111100111111111111 12356777888999999766644 4
Q ss_pred HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
..+-+.+...+++.++-+++.++...|.-.+...+. .+ +-...+-.++.+.-........|.|..+..
T Consensus 518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~-----------~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VD-----------GRLEAIQALLQSNFSPTLSAINWSLRQLTK 585 (727)
T ss_pred HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc-CC-----------cHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 555567899999999999999999999999988873 21 223334455555555667778888888875
No 319
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=53.70 E-value=72 Score=33.73 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHHHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCC------CCCchhHHHHHHHHHhcCChHHHHhhhc
Q 009647 388 VEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEG------EGKPKLIQEHLVSLVGRGCLSGFIDLVR 460 (530)
Q Consensus 388 ~~~~~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~------~~~~~~~~~~~~~l~~~g~i~~L~~lL~ 460 (530)
...++.+.+.++++.|+.+|. ..+.+++..|+.+|+.+..-+... .-.|. .-.+.|.+..++..|++..-
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn---~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPN---PLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCcc---HHHHHHhChHHHHHHHHHHh
Confidence 345566678899999999995 556789999999888885432110 01132 34678888889998888544
Q ss_pred c-CCHHHHHHHHHHHHHHHcc
Q 009647 461 S-ADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 461 ~-~d~~i~~~~L~~L~~il~~ 480 (530)
. .....+..++.++..+++.
T Consensus 129 ~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 129 NSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred cCCCcchHHHHHHHHHHHHHh
Confidence 2 3344555666666666653
No 320
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=53.07 E-value=47 Score=37.52 Aligned_cols=128 Identities=9% Similarity=0.125 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHH
Q 009647 193 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL 271 (530)
Q Consensus 193 ~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~ 271 (530)
+.++.+++-+|+++|--... +....+|.|++-|. +....++.|.+-+.+-+|..- .+ .....+|.+.
T Consensus 945 ~~vra~~vvTlakmcLah~~-----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y------Ta-m~d~YiP~I~ 1012 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR-----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY------TA-MTDRYIPMIA 1012 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH------HH-HHHHhhHHHH
Confidence 45788888999999964333 23346889998877 456788888888888888541 12 2468899999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCc--hHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647 272 RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV--LQLLVERLATSNSLQLLIPVLRSLGNLVAGD 339 (530)
Q Consensus 272 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~--l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 339 (530)
..|.++++-|+..++-.|.+|.... .+--.|. +..+..++ ..++.++.-|=.+++.+....
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998621 1112232 23344444 356677777777788776543
No 321
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=52.88 E-value=3e+02 Score=28.89 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhcCCCch-hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHH
Q 009647 194 PVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272 (530)
Q Consensus 194 ~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~ 272 (530)
.-|-.|+.+||.++..-+. ....+.. +.|+..|+++...-+..++-.+...+........... ...+.+.|..
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~--~~~l~~~L~~ 175 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPP--PQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCcc--HHHHHHHHHH
Confidence 4567788899988864211 1111111 1577888887666666666666666654211110000 1345567777
Q ss_pred HhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCch
Q 009647 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVL 309 (530)
Q Consensus 273 lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l 309 (530)
+|..+.+....+....+..+-.........+.+.|.+
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~ 212 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKV 212 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7775544444455444544444333444555556653
No 322
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.42 E-value=3.9e+02 Score=30.13 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHH-HhcCCCChHHHHH-HHHHHHHHh
Q 009647 104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQ-CLAFGSPDEQLLE-AAWCLTNIA 166 (530)
Q Consensus 104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~-lL~~~~~~~~~~e-A~~~L~nia 166 (530)
...|.+.+..++..|.+-|+..-+.++..++.. .+..++. +-+.++-+....+ |....+.++
T Consensus 371 EGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~tala 434 (960)
T KOG1992|consen 371 EGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALA 434 (960)
T ss_pred ccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHH
Confidence 366777666555555444454334555445432 2333332 3333332332233 444455554
No 323
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=52.15 E-value=45 Score=28.95 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
+..|...|+.+-.|. =+.+|+++|.+.+..+..+|+.+|.|..-
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 456666666665543 27889999999999999999999988754
No 324
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=51.90 E-value=65 Score=27.40 Aligned_cols=66 Identities=11% Similarity=-0.113 Sum_probs=43.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChH-HHHHHHHHHHHHh
Q 009647 101 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDE-QLLEAAWCLTNIA 166 (530)
Q Consensus 101 ~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~-~~~eA~~~L~nia 166 (530)
+.++++++.+++.|+..|-.++.+...+...++.....+..|+.++....... ++..++..+...+
T Consensus 44 krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 44 KRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 35568888888888888877776655455456666778888888887544332 4444555555544
No 325
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=51.42 E-value=1.2e+02 Score=25.36 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=32.6
Q ss_pred HHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 380 LSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 380 Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
|.+++..++..+.. ++..|..-|++.++.|+..|+.+|-++|..
T Consensus 25 ia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~ 68 (122)
T cd03572 25 IAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEK 68 (122)
T ss_pred HHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhh
Confidence 44454555444443 455788888888899999999999999975
No 326
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=51.40 E-value=2.3e+02 Score=27.28 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=89.4
Q ss_pred CccchhhhHHHHhhhhcCCccccchhcccCC-C---cchhhHHHHHHHhccCc----HhHHHHHHHHHHHHhcCCHHHHH
Q 009647 321 SLQLLIPVLRSLGNLVAGDSSTISDVLVPGH-G---ITDQVIAVLVKCLKSEH----RVLKKEAAWVLSNIAAGSVEHKQ 392 (530)
Q Consensus 321 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~-~---~~~~~l~~L~~lL~~~~----~~i~~~A~~~Lsnl~~~~~~~~~ 392 (530)
+......+++.|..++...+.. +++.+. . .-...+|.+..-+.+++ ......++..|+.++...
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~---lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~----- 146 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDP---LIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ----- 146 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCcc---ccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-----
Confidence 4455678888888887654432 122110 0 01245677777666665 133455666676666321
Q ss_pred HHHhCCcHHHHHHHhcCCCh----hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHH
Q 009647 393 LIHSSEALALLLHLLSTSPF----DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 468 (530)
Q Consensus 393 ~li~~~~l~~Li~lL~~~~~----~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~ 468 (530)
...-+..+......+.+ +.-+.++..|+.-.. | ++ +..++..|..+|.++-+-++.
T Consensus 147 ---~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--------P----~~-----~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 147 ---GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--------P----DH-----EFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred ---CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--------c----hh-----HHHHHHHHHHHHhCCcHHHHH
Confidence 11123333333333332 344445555544321 1 11 123456689999999999999
Q ss_pred HHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 469 LGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 469 ~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
.+++.|..++...+-.. . ...+-+..|-+|... +....|.++++..
T Consensus 207 ~~L~iL~~ll~~~d~~~-~---~~~dlispllrlL~t---~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRS-P---HGADLISPLLRLLQT---DLWMEALEVLDEI 252 (262)
T ss_pred HHHHHHHHHhccccCCC-C---cchHHHHHHHHHhCC---ccHHHHHHHHHHH
Confidence 99999999997654321 1 223344445455433 3566677777643
No 327
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=50.81 E-value=1.8e+02 Score=25.69 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=58.9
Q ss_pred cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcC-CcHHHHH-hhcCCC-CHHHHHHHHHHHHh
Q 009647 129 PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIA-HLGEKS-SSPVAEQCAWALGN 205 (530)
Q Consensus 129 ~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~-~v~~L~~-lL~~~~-~~~v~~~a~~~L~n 205 (530)
....+++..+.|.+++.+.+.+ +.+-..++.++..+...-....+.-++ .++.++. ++.+.. ...-++.++.++..
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~ 143 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRE 143 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence 5566778888999999888765 444345888888888543322222222 4555554 555432 35688889999999
Q ss_pred hcCCCchhHHHHHhc
Q 009647 206 VAGEGEEFRNVLLSQ 220 (530)
Q Consensus 206 la~d~~~~r~~~~~~ 220 (530)
++.+..-..+...+.
T Consensus 144 l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 144 LCKDPQFLVDLFVNY 158 (168)
T ss_pred HHhChhHHHHHHHHc
Confidence 998765555555543
No 328
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=50.71 E-value=1.4e+02 Score=27.03 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=53.0
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 340 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 340 (530)
-...+|.++.-|...+.....-|...+..|... ..+.+--++ ..++..|-..| .+.++++...++.+|..++...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL-~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRAL-NTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhhh
Confidence 357888888888877766666666666666653 333332222 34556666677 58899999999999999976654
No 329
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=50.29 E-value=2.5e+02 Score=28.87 Aligned_cols=143 Identities=19% Similarity=0.086 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc----------cCCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 009647 236 STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK----------RADEELTTEVAWVVVYLSALSNVATSLLVK 305 (530)
Q Consensus 236 ~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~----------~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~ 305 (530)
..+..++-++.-|++.++.-. -+.....+..|+.+-. .+|..+...+..||+|+.-.++...+...+
T Consensus 61 t~~v~~LetvrILSRdk~~L~---~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~ 137 (532)
T KOG4464|consen 61 THRVVCLETVRILSRDKDGLE---PLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLE 137 (532)
T ss_pred hhhhhHHHHHHHHhccccccc---cccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 334455556666666543211 1112344444444432 234578999999999999888777777777
Q ss_pred cCchHHHHHHHhcCCC----ccchhhhHHHHhhhhcCCcc-ccchhcccCCCcchhhHHHHHHHhccC------------
Q 009647 306 SGVLQLLVERLATSNS----LQLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSE------------ 368 (530)
Q Consensus 306 ~g~l~~Lv~lL~~~~~----~~v~~~al~~L~nl~~~~~~-~~~~~i~~g~~~~~~~l~~L~~lL~~~------------ 368 (530)
......+.+.+..+.. -.+...=++.|--+..-... ..+-+. ..++++.+.+++.+.
T Consensus 138 ~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~------~l~Gl~~lt~~led~lgidse~n~~~l 211 (532)
T KOG4464|consen 138 NPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIA------ELLGLELLTNWLEDKLGIDSEINVPPL 211 (532)
T ss_pred hhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHH------HhcccHHHHHHhhccccCCCCcCCCCC
Confidence 7777777776642211 11222233333333322222 233333 245777777777532
Q ss_pred ---cHhHHHHHHHHHHHHhcCC
Q 009647 369 ---HRVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 369 ---~~~i~~~A~~~Lsnl~~~~ 387 (530)
+....-+|..++.|++..+
T Consensus 212 ~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 212 NPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CHHHHHHHHHHHHHHhheeecc
Confidence 1145567788888887653
No 330
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.42 E-value=4.1e+02 Score=29.52 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=28.7
Q ss_pred CchhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHhhc
Q 009647 210 GEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIK 250 (530)
Q Consensus 210 ~~~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~ 250 (530)
.+.+|..+.+.|++..+++.|-+. ......-+..+|.+|..
T Consensus 364 ~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs 405 (865)
T KOG2152|consen 364 MPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLS 405 (865)
T ss_pred ChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHh
Confidence 579999999999999999877643 33444444445555543
No 331
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=48.94 E-value=3.7e+02 Score=29.45 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHhhcCCCchhHHHHH---hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHH
Q 009647 192 SSPVAEQCAWALGNVAGEGEEFRNVLL---SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 268 (530)
Q Consensus 192 ~~~v~~~a~~~L~nla~d~~~~r~~~~---~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~ 268 (530)
+++++.-|+-+|.-+..+....-..+. .+..+..++..+. .++.-+-.++++|+|+..+. ..++.+. .. +.
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~---~g~~~~~-s~-~~ 630 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNP---AGRELFM-SR-LE 630 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCH---HHHHHHH-HH-HH
Confidence 355556666655555443322221111 2233444444443 45677778899999998652 2233322 11 22
Q ss_pred HHHHHh----ccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh----cCCCccchhhhHHHHhhhhcCCc
Q 009647 269 AILRHL----KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA----TSNSLQLLIPVLRSLGNLVAGDS 340 (530)
Q Consensus 269 ~L~~lL----~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~----~~~~~~v~~~al~~L~nl~~~~~ 340 (530)
.+...+ ..++..+.....-...|++-. .++.--+.+..+.+..++. ...+.+....++.|||++++.+.
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~ 707 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDA 707 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccH
Confidence 222111 122334443333333333310 0111111344444444432 12233344567889999998876
Q ss_pred cccchh
Q 009647 341 STISDV 346 (530)
Q Consensus 341 ~~~~~~ 346 (530)
...+..
T Consensus 708 ~~~~~A 713 (745)
T KOG0301|consen 708 SVIQLA 713 (745)
T ss_pred HHHHHH
Confidence 555433
No 332
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=48.87 E-value=44 Score=32.87 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=46.4
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCc-hh---HHHHHHHHHhcCChHHHHhhhcc
Q 009647 398 EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKP-KL---IQEHLVSLVGRGCLSGFIDLVRS 461 (530)
Q Consensus 398 ~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~-~~---~~~~~~~l~~~g~i~~L~~lL~~ 461 (530)
..+..+++-|.+++...+.+|+.+|..++.|......+. .| +..++..|.+.|++++|+.+|..
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 456788888999999999999999999998764222221 11 11344456678999999999874
No 333
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=47.86 E-value=2.2e+02 Score=28.11 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhcCCchhHH---------------------HHHhcCchHHHHHHHhcCC-CccchhhhHHHHhhhhcC
Q 009647 281 LTTEVAWVVVYLSALSNVATS---------------------LLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 281 v~~~a~~~L~~L~~~~~~~~~---------------------~i~~~g~l~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~ 338 (530)
+...-+..+..+++.+..... .--+.|.+..++..+...+ +...+....+|+-....+
T Consensus 48 lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg 127 (303)
T PF12463_consen 48 LKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRG 127 (303)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcC
Confidence 567777777777763321110 0113577888888776443 445677888999999999
Q ss_pred Ccc-ccchhcccCCCcchhhHHHHHHHhccCc---HhHHHHHHHHHHHHhcCCHHHHHHH
Q 009647 339 DSS-TISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSVEHKQLI 394 (530)
Q Consensus 339 ~~~-~~~~~i~~g~~~~~~~l~~L~~lL~~~~---~~i~~~A~~~Lsnl~~~~~~~~~~l 394 (530)
.+. ..|.++. +.|+++.++.-+-++. ..+...+.-.|+-+..++....+.+
T Consensus 128 ~t~~~~Q~fl~-----~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~f~~l 182 (303)
T PF12463_consen 128 ATSYADQAFLA-----ERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDAFQRL 182 (303)
T ss_pred CCcHHHHHHHH-----hcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888 4565553 4689999998876543 4688888999999999887655544
No 334
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.79 E-value=6.1e+02 Score=30.50 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=56.0
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
+++|.|-.-|.+.+..+|+.|...++-+......+.. =-...+....+.-+.+.++.||.+++....++..+
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 7999999999999999999999999999875433322 00124566677777888999999999998887653
No 335
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.48 E-value=5e+02 Score=29.42 Aligned_cols=244 Identities=14% Similarity=0.164 Sum_probs=136.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcH
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP 181 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~ 181 (530)
++.++-...+.+++..+-++-...+.| .++++ ..=.|......++ ..+++..+.+.. .+| .+...+..+.+
T Consensus 32 Glr~~~t~eqpeavvr~~RLFek~Pfp---ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~--q~g--~hln~v~n~aE 102 (970)
T KOG1988|consen 32 GLRSGKTSEQPEAVVRFPRLFEKYPFP---IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQ--QSG--KHLNKVLNGAE 102 (970)
T ss_pred cccccccccchHHHHHHHHHHhhCCch---hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHh--hcc--ccchhhhhhhh
Confidence 556777788889998888875544433 23332 2233444454444 345554444444 122 23444443333
Q ss_pred HHHHhh--cCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHh-hcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 182 LLIAHL--GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 182 ~L~~lL--~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
.+-..+ .++.++.-+..++..+|.++.--| +..-.+.++. -+.+++.-=.+.+..+..+++.-... +
T Consensus 103 ~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~---F 172 (970)
T KOG1988|consen 103 FLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKD---F 172 (970)
T ss_pred hhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhh---h
Confidence 333222 223678888888888887664222 2334444443 34455544567777888777753211 1
Q ss_pred hHHHhhchHHHHHHHhccCC--HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647 259 ELIKVDGLLDAILRHLKRAD--EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~ 336 (530)
. .++.-.+..++...+ +......+-+++.+.... .....+......++.+.+..+-..+-+.++-+++
T Consensus 173 -A---~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~a------t~A~ra~~l~m~lv~~tps~d~~v~fL~stT~La 242 (970)
T KOG1988|consen 173 -A---CSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHA------TGASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLA 242 (970)
T ss_pred -H---HHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchh------hhhHHHHHHHHHHhcCCCcccceeeehhhhHHHH
Confidence 1 133333444444333 356777888888888621 1222334455556656666666677888888887
Q ss_pred cCCccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHHHHhc
Q 009647 337 AGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAA 385 (530)
Q Consensus 337 ~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~ 385 (530)
...-.. -.+-+..|.++++. ....++..+.|.+.+++.
T Consensus 243 srs~~a-----------i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 243 SRSLVA-----------ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHH-----------hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 543211 12456677777763 345677778888887764
No 336
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=44.77 E-value=99 Score=26.65 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=47.4
Q ss_pred hHHHHhhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHH-HHHHhcC---CcHHHHHHHHHHHHhh
Q 009647 452 LSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA-MERFQFH---ENEDLRNMANGLVDKY 521 (530)
Q Consensus 452 i~~L~~lL~-~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~-L~~L~~~---~~~~i~~~A~~il~~~ 521 (530)
+..|-.=|. ..++.++..+|..|+.+.+.|+. .+...|-.-+.++. |..+... .+.+|+++...+++.+
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~-~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH-RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHH
Confidence 344555555 46889999999999999887753 23344444556665 6666542 3568999999999876
No 337
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.26 E-value=5.9e+02 Score=29.85 Aligned_cols=343 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCC------HHHHHHHHHHHH
Q 009647 133 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSS------SPVAEQCAWALG 204 (530)
Q Consensus 133 ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~------~~v~~~a~~~L~ 204 (530)
+.+..++..|-...-...+..+|.+....+..|-+.++++-..+- -.+|.|+.-+...++ .++.|.|+..+.
T Consensus 462 VkdLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvn 541 (2799)
T KOG1788|consen 462 VKDLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVN 541 (2799)
T ss_pred ccchHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhc
Q ss_pred hhcCCCchhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-------
Q 009647 205 NVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR------- 276 (530)
Q Consensus 205 nla~d~~~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~------- 276 (530)
.+-..- +-.|+-+|+.+ ...+....+..+..|...+ ....+...+-|++..|...++.
T Consensus 542 cvPeqE------------LlSLCvLLqqpIssalkhtIlsffvKLIsfD--qqyKkvlREVGvLevLqddlkqhkll~gp 607 (2799)
T KOG1788|consen 542 CVPEQE------------LLSLCVLLQQPISSALKHTILSFFVKLISFD--QQYKKVLREVGVLEVLQDDLKQHKLLRGP 607 (2799)
T ss_pred cCcHHH------------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHhhHHHHHHHHHHHhhhccCc
Q ss_pred -----------------------------------------CCHHHHHHH-----HHHHHHhhcCCchhHHHHHhcCchH
Q 009647 277 -----------------------------------------ADEELTTEV-----AWVVVYLSALSNVATSLLVKSGVLQ 310 (530)
Q Consensus 277 -----------------------------------------~d~~v~~~a-----~~~L~~L~~~~~~~~~~i~~~g~l~ 310 (530)
.++-..... .-||..|..++.++...+.+..++.
T Consensus 608 dqysgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvk 687 (2799)
T KOG1788|consen 608 DQYSGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVK 687 (2799)
T ss_pred chhhhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCce
Q ss_pred HHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC------------cHhHHHHHHH
Q 009647 311 LLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE------------HRVLKKEAAW 378 (530)
Q Consensus 311 ~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~------------~~~i~~~A~~ 378 (530)
.++..+ -+.+-+...++.+..+...++.|...- -+-.++..|+++ ..+.....+.
T Consensus 688 lilpfl---indehRSslLrivscLitvdpkqvhhq----------elmalVdtLksgmvt~IsgeqyklhfsllcdlmG 754 (2799)
T KOG1788|consen 688 LILPFL---INDEHRSSLLRIVSCLITVDPKQVHHQ----------ELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMG 754 (2799)
T ss_pred EEEEee---echHHHHHHHHHHHHHhccCcccccHH----------HHHHHHHHHHhcceeccchhHHHHHHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhH--------------------------------------------
Q 009647 379 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDI-------------------------------------------- 414 (530)
Q Consensus 379 ~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v-------------------------------------------- 414 (530)
++..+..-+......+-+++++..|...|..-....
T Consensus 755 alwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqt 834 (2799)
T KOG1788|consen 755 ALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQT 834 (2799)
T ss_pred HHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHH
Q ss_pred --------------------------------------HHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHH
Q 009647 415 --------------------------------------KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI 456 (530)
Q Consensus 415 --------------------------------------~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~ 456 (530)
...||..+-.+-.+...+..-.++.....+.+.+.|++..++
T Consensus 835 ftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvli 914 (2799)
T KOG1788|consen 835 FTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLI 914 (2799)
T ss_pred HHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHH
Q ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc
Q 009647 457 DLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF 504 (530)
Q Consensus 457 ~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~ 504 (530)
+.+-...++++..-|..++.+.+..+. +....+..|.++.|-++.+
T Consensus 915 rslLlnypK~qlefl~lleSlaRaspf--naelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 915 RSLLLNYPKLQLEFLNLLESLARASPF--NAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred HHHHhhChHHHHHHHHHHHHHhhcCCC--chhhhhcccHHHHHHHHhh
No 338
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=44.14 E-value=47 Score=27.13 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhh
Q 009647 282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP 327 (530)
Q Consensus 282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~ 327 (530)
+...+..++.|+. .++....+++.|+++.|+.+| .|.+..+...
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL-~HeN~DIai~ 106 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLL-SHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHH-CCCCcceehc
Confidence 4456777888887 456777888999999999999 5888776544
No 339
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=43.82 E-value=34 Score=26.64 Aligned_cols=70 Identities=11% Similarity=0.188 Sum_probs=45.5
Q ss_pred hcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHH
Q 009647 305 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS 381 (530)
Q Consensus 305 ~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Ls 381 (530)
+...+.++..++....+.+++.-.+.|+..++...... +.+| +.-++..+-....+++..+...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~----i~SG---W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN----IKSG---WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH----HHhc---cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 44567777777656668889999999999998655432 3333 3444555555555566677777766554
No 340
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=42.89 E-value=51 Score=32.41 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=43.1
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC--------------chhHHHHHhcCchHHHHHHHh
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALS--------------NVATSLLVKSGVLQLLVERLA 317 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--------------~~~~~~i~~~g~l~~Lv~lL~ 317 (530)
....+..++.-|...+...+..++.+|.|++.|. ..+...+.+.|+++.++.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4577888888888999999999999999999873 123345567788888888775
No 341
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.66 E-value=1.9e+02 Score=29.41 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=77.7
Q ss_pred hHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCc
Q 009647 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKP 436 (530)
Q Consensus 357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~ 436 (530)
-+..|..-+.|.+..+|++|..-|-.+....+...+.-.. .+++.+..+..+.+..+|.....++-++..... |
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~-~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~-----~ 132 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLY-ALLQKLRELILDDDSLVRDALYQLLDSLILPAC-----K 132 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHH-HHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc-----h
Confidence 4667788889999999999999998887665544442222 267777888888888999998888888654321 1
Q ss_pred hhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC
Q 009647 437 KLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN 483 (530)
Q Consensus 437 ~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~ 483 (530)
++ ....-.=+++.+...+..-.++++.-++..|..++..++.
T Consensus 133 ----e~-~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 133 ----ED-QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred ----hh-hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 11 1111111233444445566788888888888888876653
No 342
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=41.24 E-value=4.4e+02 Score=27.55 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHH---HHHHHHHHHHH
Q 009647 89 TSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQ---LLEAAWCLTNI 165 (530)
Q Consensus 89 ~~~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~---~~eA~~~L~ni 165 (530)
+...+..|..++..-.+..-+-.++|+..+-..+...-.|....++ ..++..+...-+.+++|.. .+|+..++...
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il-~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEIL-QHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHH-HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 3446778888887444444444556665554443333333333333 2244444444455555532 37877777666
Q ss_pred hcC-ChhhHHhhcC-CcHHHHHhhcCCCCHHHHHHHHHHHHhhc
Q 009647 166 AAG-KQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVA 207 (530)
Q Consensus 166 a~~-~~~~~~~i~~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla 207 (530)
.+. +++....+.+ .+|.+...|+. +-.+....+.-.|+-+.
T Consensus 103 ~~~~~~~~v~~~E~~L~P~f~~ILq~-dV~EF~PYvfQIla~Ll 145 (435)
T PF03378_consen 103 VCEADPEAVSQFEEALFPPFQEILQQ-DVQEFIPYVFQILAQLL 145 (435)
T ss_dssp S-GGGHH---HHHHHHHHHHHHHHHT-T-TTTHHHHHHHHHHHH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 543 3433334443 78899999986 44455555555555444
No 343
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=40.89 E-value=1.3e+02 Score=31.83 Aligned_cols=73 Identities=26% Similarity=0.289 Sum_probs=45.2
Q ss_pred CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC-------------chhHHHHHhcCChhhhHhhcCC-CChhHHHHHHH
Q 009647 178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG-------------EEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAW 243 (530)
Q Consensus 178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~-------------~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~ 243 (530)
+.|+.|+.+|....+++++..|+..|..|..-+ .+.-..+.....+..|+..+-. .......+++.
T Consensus 62 ~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~ 141 (475)
T PF04499_consen 62 NLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVS 141 (475)
T ss_pred CHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHH
Confidence 589999999986567888998888877665321 2233344445555555554332 33455556666
Q ss_pred HHHHhhc
Q 009647 244 ALSNLIK 250 (530)
Q Consensus 244 ~L~nL~~ 250 (530)
.+..|.+
T Consensus 142 IlieLIR 148 (475)
T PF04499_consen 142 ILIELIR 148 (475)
T ss_pred HHHHHHH
Confidence 6655554
No 344
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=40.68 E-value=63 Score=27.13 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=45.4
Q ss_pred ChHHHHhhhccC--CHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC------cHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSA--DIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE------NEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~--d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~------~~~i~~~A~~il~~~ 521 (530)
++..|..-|... +...+.++|..|+.++..+++......-....-+..|..+++-+ ...|+++|..|++-.
T Consensus 38 Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 38 IMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEILELL 116 (123)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHh
Confidence 345555555543 67889999999999998776422122223334555555555532 258999999998844
No 345
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.30 E-value=5.9e+02 Score=28.72 Aligned_cols=311 Identities=14% Similarity=0.138 Sum_probs=154.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH--cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALK--AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 170 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~--~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~ 170 (530)
.+.+..+++ ..+|..+++.++++++-++....-. -+.+.. .++...+..+|..-..-+.+......|+.+-....
T Consensus 528 Y~a~lnLL~--d~~D~vV~Ltt~~tlkl~vDD~nF~-~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~ 604 (978)
T KOG1993|consen 528 YCAFLNLLQ--DQNDLVVRLTTARTLKLVVDDWNFS-EDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVS 604 (978)
T ss_pred HHHHHHhcC--ccccceeehHHHHHHHHhhhhccCC-hhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 444444443 2337788899999998887532211 111211 34444455555432222233445555555554333
Q ss_pred hhHHhhcC-CcHHHHHhhcCC-CCHHHHHHHHHHHHhhcC----CCchhHHHHHhcCChhhhHhhcCC---C-ChhHHHH
Q 009647 171 EETKALLP-ALPLLIAHLGEK-SSSPVAEQCAWALGNVAG----EGEEFRNVLLSQGALPPLARMMLP---N-KGSTVRT 240 (530)
Q Consensus 171 ~~~~~i~~-~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~----d~~~~r~~~~~~g~i~~L~~lL~~---~-~~~~~~~ 240 (530)
++...... .+..|-.+-..+ +.+-++-+.+.+|.|+.. .++.+... +-|++.+-.+ + +.-+.+.
T Consensus 605 e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~f------L~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 605 EHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPF------LYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred HhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHH------HHHHHHHhcCCCCCceeehhhh
Confidence 33322221 222222222221 344566666667766652 22222222 2233333322 2 2223332
Q ss_pred --HHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc
Q 009647 241 --AAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT 318 (530)
Q Consensus 241 --a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~ 318 (530)
..|.- .. ...+....++ -+.+|.++..+....+.+....--.=+|+.-.+.+ .-.....|++..+.+++.
T Consensus 679 gmeLW~~--~L-~n~~~l~p~l---l~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~- 750 (978)
T KOG1993|consen 679 GMELWLT--TL-MNSQKLTPEL---LLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLD- 750 (978)
T ss_pred HHHHHHH--HH-hcccccCHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHH-
Confidence 33421 11 1113333343 27788888888765544443333333444433333 222345688888988885
Q ss_pred CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh--ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 009647 319 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL--KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHS 396 (530)
Q Consensus 319 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL--~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~ 396 (530)
.-..+-....|+++..+...++ ..+... ..+++|.+..-+ ..+.|.+.-.-..+++.+.-.+++....+.+
T Consensus 751 dvr~egl~avLkiveili~t~~-il~~~~------~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlq 823 (978)
T KOG1993|consen 751 DVRNEGLQAVLKIVEILIKTNP-ILGSLL------FSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQ 823 (978)
T ss_pred HhhHHHHHHHHHHHHHHHhhhH-HHHhhh------cchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHH
Confidence 3344556677888877776554 222222 235777765544 3345677777778888887777776665554
Q ss_pred C-CcHHHHH--------HHhc-CCChhHHHHHHHHHHHhcC
Q 009647 397 S-EALALLL--------HLLS-TSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 397 ~-~~l~~Li--------~lL~-~~~~~v~~eA~~aL~nl~~ 427 (530)
. .-...++ .++. -.+++-||--+-+++.+..
T Consensus 824 t~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~ 864 (978)
T KOG1993|consen 824 TKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLR 864 (978)
T ss_pred hhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhc
Confidence 2 2122333 1221 2456667777777777754
No 346
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.76 E-value=5.6e+02 Score=28.31 Aligned_cols=297 Identities=14% Similarity=0.091 Sum_probs=147.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647 94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 173 (530)
Q Consensus 94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~ 173 (530)
+.+.+-+. .+.|+..+..|=++|+.+ +.. |. .+...--+|..++.+--++-|+.+|..+.++...-.
T Consensus 8 e~lCk~LY--~s~D~~~R~~AE~~L~e~-s~s--pe--------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lp 74 (1082)
T KOG1410|consen 8 ESLCKDLY--ESTDPTARHRAEKALAEL-SES--PE--------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLP 74 (1082)
T ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHHH-ccC--HH--------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCc
Confidence 44444333 488999999999999998 322 21 223333345555556566778888888887654211
Q ss_pred -HhhcCCcHHHHHhhcCCCCHH----HHHHHHHHHHhhcCC--CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHH
Q 009647 174 -KALLPALPLLIAHLGEKSSSP----VAEQCAWALGNVAGE--GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS 246 (530)
Q Consensus 174 -~~i~~~v~~L~~lL~~~~~~~----v~~~a~~~L~nla~d--~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~ 246 (530)
..-+++-..++.+|.. ..|+ |....+..++.|..- ....++...-.+.+..+.++++.++.+-...++..|+
T Consensus 75 l~qrldir~Yilnylat-~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLs 153 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLAT-GAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILS 153 (1082)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHH
Confidence 1111344556666654 2222 333333444444421 1122333344456777788888777666666777777
Q ss_pred HhhcCCC-CCchhhHHHhhchHHHHHHHhccCC-HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccc
Q 009647 247 NLIKGPD-PKPATELIKVDGLLDAILRHLKRAD-EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324 (530)
Q Consensus 247 nL~~~~~-~~~~~~~v~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v 324 (530)
.|...-+ +.+.... .-...+..-.+++. -++..-+|..|.+..+-+-.. -...|.+..++.+-...
T Consensus 154 qLvqemN~~~~~~p~----tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd---~~q~~L~~~vL~L~l~C----- 221 (1082)
T KOG1410|consen 154 QLVQEMNQADGMDPS----TKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLND---RAQLGLLMQVLKLNLNC----- 221 (1082)
T ss_pred HHHHHhhCCCCCCcc----hHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCccc---HhHhhHHHHHHHHHhhh-----
Confidence 7764311 0000000 00001111111111 256677777777776321111 11223333333321110
Q ss_pred hhhhHHHHhhhhcCCc----------cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC------CH
Q 009647 325 LIPVLRSLGNLVAGDS----------STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG------SV 388 (530)
Q Consensus 325 ~~~al~~L~nl~~~~~----------~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~------~~ 388 (530)
-....+|..+..+. .....+. +...++.+..++.+-.+...+.|..+|..++.- +.
T Consensus 222 --l~FDfiGss~DEssed~ctVQIPTsWRs~f~------d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~a 293 (1082)
T KOG1410|consen 222 --LNFDFIGSSTDESSEDLCTVQIPTSWRSSFL------DSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGA 293 (1082)
T ss_pred --ccccccccccccccccccceecCcHHHHHhc------CchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCH
Confidence 00111221111111 0111233 346788888998888888889999999888752 22
Q ss_pred HHHHHHHhCCcHHHHHHHhcC----CChhHHHHHHHHHHHhc
Q 009647 389 EHKQLIHSSEALALLLHLLST----SPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 389 ~~~~~li~~~~l~~Li~lL~~----~~~~v~~eA~~aL~nl~ 426 (530)
+....+ .+ ++.-..++|.+ +|+.--.+=|..|+.+-
T Consensus 294 eRa~yl-~~-Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 294 ERAKYL-QH-LVEGVKRILENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred HHHHHH-HH-HHHHHHHHHhCCcCCCCcchHHHHHHHHHHHH
Confidence 222222 21 44445555654 34555566666666663
No 347
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=39.13 E-value=12 Score=35.25 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=23.7
Q ss_pred chHhhhhHHHHHHHHhHhhHHHHHHhhh
Q 009647 32 NVAAQRRRQNAVTVGKERRESLVRAKRL 59 (530)
Q Consensus 32 ~~~~~rr~~~~~~lrk~~r~~~l~~kR~ 59 (530)
+....-||.++.++|++||++.+..||.
T Consensus 6 ~~~~~~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 6 SAVAAARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred cchHHHHHHHHHHHhhhccccceeeccc
Confidence 3455678888999999999999999985
No 348
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=38.92 E-value=1e+02 Score=22.86 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=41.6
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCch
Q 009647 240 TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVL 309 (530)
Q Consensus 240 ~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l 309 (530)
..+|+++.|=.. |....++. ..+...+..-+..-++....+++|.++.+-.-+.+.++.+.+...+
T Consensus 3 ~il~~fa~LNy~--P~~~~~f~--~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl 68 (71)
T PF06743_consen 3 SILLPFARLNYQ--PPNAEEFF--EKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFL 68 (71)
T ss_pred HHHHHHHhcCCC--CCCHHHHH--HHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHH
Confidence 467777777533 33222221 2344445555556678999999999999988777777666554433
No 349
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=37.76 E-value=1.9e+02 Score=25.14 Aligned_cols=125 Identities=11% Similarity=0.122 Sum_probs=75.8
Q ss_pred chhhHHHhhchHHHHHHHhcc-CCHHHHHHHHHHHHHhhcC--CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHH
Q 009647 256 PATELIKVDGLLDAILRHLKR-ADEELTTEVAWVVVYLSAL--SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332 (530)
Q Consensus 256 ~~~~~v~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~--~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L 332 (530)
..++...+...+..+++++.. ....+....+.+++-|..+ ++...-.+.+.+.+..++..=-+-.++++...=...|
T Consensus 17 ~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsfL 96 (149)
T PF09758_consen 17 SFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISFL 96 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 367777788999999999987 4567777777777766653 3334445566666666654322345667766544444
Q ss_pred hhhhcC-CccccchhcccCCCcchhhHH---HHHHHhccCcHhHHHHHHHHHHHHh
Q 009647 333 GNLVAG-DSSTISDVLVPGHGITDQVIA---VLVKCLKSEHRVLKKEAAWVLSNIA 384 (530)
Q Consensus 333 ~nl~~~-~~~~~~~~i~~g~~~~~~~l~---~L~~lL~~~~~~i~~~A~~~Lsnl~ 384 (530)
..++.. ++...+-..+. ..+-.| .-++++.|++..+|..+-.++-|+.
T Consensus 97 K~lSlkln~~tv~fffn~----~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 97 KTLSLKLNKDTVQFFFNE----RNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHhhcCCCceeEeEec----CCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 444422 22222223321 122333 4466778888888888777776653
No 350
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=37.71 E-value=3.5e+02 Score=26.91 Aligned_cols=178 Identities=10% Similarity=0.124 Sum_probs=93.9
Q ss_pred cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHH-h---ccCcHhHH-HHHHHHHHHHhc----CCHHHHHH
Q 009647 323 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC-L---KSEHRVLK-KEAAWVLSNIAA----GSVEHKQL 393 (530)
Q Consensus 323 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~l-L---~~~~~~i~-~~A~~~Lsnl~~----~~~~~~~~ 393 (530)
.++...++.+...+...++... +. ..++|+|+.. | ....|..| .++..+++.++. ...+.+..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~-v~-------~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~ 113 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEE-VA-------NNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQ 113 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHH-HH-------HHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHH-HH-------HHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHH
Confidence 3556777777777765543322 22 3577777663 3 22233332 233444444432 22344555
Q ss_pred HHhCCcHHHHHHHhcC---CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc------CChHHHHhhhccCCH
Q 009647 394 IHSSEALALLLHLLST---SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR------GCLSGFIDLVRSADI 464 (530)
Q Consensus 394 li~~~~l~~Li~lL~~---~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~------g~i~~L~~lL~~~d~ 464 (530)
+++. ++.+.+.++.. .-|+.+..=-..|.+++..+ ...+... -++..++--++..++
T Consensus 114 I~~~-vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~-------------f~~l~~lp~~~f~~~idsi~wg~kh~~~ 179 (319)
T PF08767_consen 114 ILEA-VFECTLPMINKDFEEYPEHRVNFFKLLRAINEHC-------------FPALLQLPPEQFKLVIDSIVWGFKHTNR 179 (319)
T ss_dssp HHHH-HHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHH-------------THHHHHS-HHHHHHHHHHHHHHHTSSSH
T ss_pred HHHH-HHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHh-------------HHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 5554 56677777754 23677777666666665421 1222221 345566667778899
Q ss_pred HHHHHHHHHHHHHHccCCC--CcchhHHHHhchHHHHHH----HhcCCcHHHHHHHHHHHHhhc
Q 009647 465 EAARLGLQFMELVLRGMPN--HEGTKLVEREDGIDAMER----FQFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 465 ~i~~~~L~~L~~il~~~~~--~~~~~~i~~~ggl~~L~~----L~~~~~~~i~~~A~~il~~~f 522 (530)
++...+|++|..++....+ .+....+.+...++.|.. +.........+.-..+|.++|
T Consensus 180 ~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 180 EISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 9999999999998865433 122334444444443333 233333334444445555555
No 351
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=37.51 E-value=44 Score=27.27 Aligned_cols=42 Identities=31% Similarity=0.193 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647 374 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 416 (530)
Q Consensus 374 ~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~ 416 (530)
-+.+..++.++. .|+.-..+++.|+++.|+.+|.|.+.++..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345666777765 457777889999999999999999887643
No 352
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=37.47 E-value=2.3e+02 Score=23.30 Aligned_cols=102 Identities=12% Similarity=0.188 Sum_probs=58.1
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647 399 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 478 (530)
Q Consensus 399 ~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il 478 (530)
+++.|++.|.+++.+|...|..+|...|... +....++... |.+.. |..... -.+..++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-----------~~le~~v~~~--p~l~~-L~~~g~-------~Ll~~~l 67 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-----------EYLEYLVSLR--PSLDH-LGDIGS-------PLLLRFL 67 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-----------hhHHHHHHcC--cHHHH-HHHcCH-------HHHHHHH
Confidence 5788999999999999999999999998742 2345555432 22222 221111 1122232
Q ss_pred ccCCCCcchhHHHHhchHH-HHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647 479 RGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNMANGLVDKYFGE 524 (530)
Q Consensus 479 ~~~~~~~~~~~i~~~ggl~-~L~~L~~~~~~~i~~~A~~il~~~f~~ 524 (530)
.. ..+-+.+.+.|.++ .++.=....|.+--.+....+...|..
T Consensus 68 S~---~~Gf~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~~ 111 (115)
T PF14663_consen 68 ST---PSGFRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALTN 111 (115)
T ss_pred cc---hHHHHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Confidence 11 11223444445444 344445667776666666666665554
No 353
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.47 E-value=6.7e+02 Score=28.29 Aligned_cols=318 Identities=15% Similarity=0.069 Sum_probs=142.8
Q ss_pred HHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcC-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcC
Q 009647 130 IETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAG 208 (530)
Q Consensus 130 ~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~ 208 (530)
.+.-...-.+|-+- ...++...+++..+|.++.-.+- +....... +-..++++|+..++.-|+-.++.++.-...
T Consensus 481 F~~Wl~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vD 556 (978)
T KOG1993|consen 481 FDKWLQEALLPELA--NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVD 556 (978)
T ss_pred HHHHHHHhhCHHhh--hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhh
Confidence 34455555556554 22333345567799999988862 22222221 455678888875577788888888877665
Q ss_pred CCchhHHHHHh--cCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHH
Q 009647 209 EGEEFRNVLLS--QGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEV 285 (530)
Q Consensus 209 d~~~~r~~~~~--~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a 285 (530)
|-.-..+.+.. ......+.++++. +..+.+-....+++.+...-++...+-....-..+|.|.+-- .+.+-++...
T Consensus 557 D~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~al 635 (978)
T KOG1993|consen 557 DWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCAL 635 (978)
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHH
Confidence 44322232221 1222333344432 233444455555555543221111110000112222222111 2233456666
Q ss_pred HHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCcc---chhhhH----HHHhhhhcCCccccchhcccCCCcchhhH
Q 009647 286 AWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQ---LLIPVL----RSLGNLVAGDSSTISDVLVPGHGITDQVI 358 (530)
Q Consensus 286 ~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~---v~~~al----~~L~nl~~~~~~~~~~~i~~g~~~~~~~l 358 (530)
+.+|.++...-...-. .. ...+-.++++-.+-++++ ....+. .+|+|. ...+..++ +.+
T Consensus 636 L~~L~~lV~alg~qS~-~~-~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~----~~l~p~ll--------~L~ 701 (978)
T KOG1993|consen 636 LATLRNLVNALGAQSF-EF-YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS----QKLTPELL--------LLF 701 (978)
T ss_pred HHHHHHHHHHhccCCc-cc-hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc----cccCHHHH--------HHH
Confidence 7777777642100000 00 011112222211111111 112222 233443 23333333 578
Q ss_pred HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchh
Q 009647 359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKL 438 (530)
Q Consensus 359 ~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~ 438 (530)
|.|...+......++..-.-.=+.+.-.++...+ --..|+...+..++.+-..+-....+.++.++... +
T Consensus 702 p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t------~--- 771 (978)
T KOG1993|consen 702 PHLLYIIEQSTENLPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT------N--- 771 (978)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh------h---
Confidence 8888888655444332222222222223323211 11235677777777654444444555555555431 1
Q ss_pred HHHHHHHHHhcCChHHHHhhhc--cCCHHHHHHHHHHHHHHH
Q 009647 439 IQEHLVSLVGRGCLSGFIDLVR--SADIEAARLGLQFMELVL 478 (530)
Q Consensus 439 ~~~~~~~l~~~g~i~~L~~lL~--~~d~~i~~~~L~~L~~il 478 (530)
.....+...++++.+..-.- .+.|.+...-|..+.+++
T Consensus 772 --~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~ 811 (978)
T KOG1993|consen 772 --PILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARIS 811 (978)
T ss_pred --HHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 23445556667666655332 233455555555555444
No 354
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=35.52 E-value=56 Score=21.53 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=19.8
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHH
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWV 379 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~ 379 (530)
.+...+..-+.++++.||+.|.-+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 577788888899999999988754
No 355
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=35.04 E-value=4.7e+02 Score=26.07 Aligned_cols=219 Identities=18% Similarity=0.120 Sum_probs=106.8
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHH
Q 009647 283 TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 362 (530)
Q Consensus 283 ~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~ 362 (530)
.-.+.+|..+.. .+ +...++..+..++.+..++..+...+.+++.=...-+. .....++..+.
T Consensus 5 ~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~----------~~~~~~~~~~~ 67 (339)
T PF12074_consen 5 VLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS----------ELPKKVVDAFK 67 (339)
T ss_pred HHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc----------CCCHHHHHHHH
Confidence 334455555554 22 23445666777776667777777777777754433211 11346788888
Q ss_pred HHhccCcHhHHHHHHHHHHHHhc--CCHHHHHHHHhCCcHHHHHHHhc----CCChhHH---HHHHHHHHHhcCCCCCCC
Q 009647 363 KCLKSEHRVLKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLS----TSPFDIK---KEVAYVLGNLCVSPTEGE 433 (530)
Q Consensus 363 ~lL~~~~~~i~~~A~~~Lsnl~~--~~~~~~~~li~~~~l~~Li~lL~----~~~~~v~---~eA~~aL~nl~~~~~~~~ 433 (530)
.=+.+.++.+|+.-+..++++.. .+......+ . .++|.|++.++ ++-...+ -.+++++.-+.......-
T Consensus 68 kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~-~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~ 145 (339)
T PF12074_consen 68 KGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFA-E-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKI 145 (339)
T ss_pred HHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHH-H-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhh
Confidence 88888888899888888888765 111112212 1 26777777773 3322222 223333333211100000
Q ss_pred CCchhHHHHHHHHHhcCChHHHH---hhhcc-CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC--c
Q 009647 434 GKPKLIQEHLVSLVGRGCLSGFI---DLVRS-ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--N 507 (530)
Q Consensus 434 ~~~~~~~~~~~~l~~~g~i~~L~---~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~--~ 507 (530)
.. . ......+.- +-=+.++ +++.. .+++-..-.+++++.++........... . ..--+.+..+.-|. .
T Consensus 146 ~~-~--~~~~~~l~~-~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~-~~~~~a~i~ll~s~~~~ 219 (339)
T PF12074_consen 146 DS-K--NISFWSLAL-DPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-S-SAWAQAFIYLLCSSNVS 219 (339)
T ss_pred hh-h--hhhhhhhcc-CCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-H-HHHHHHHHHHHHcCCCC
Confidence 00 0 000000000 0000000 12222 3444455566777777654322111111 1 11223344555555 7
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 009647 508 EDLRNMANGLVDKYFGEDY 526 (530)
Q Consensus 508 ~~i~~~A~~il~~~f~~~~ 526 (530)
.++++.|...+.+.|..+.
T Consensus 220 ~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 220 WKVRRAALSALKKLYASNP 238 (339)
T ss_pred HHHHHHHHHHHHHHHHhCh
Confidence 8899999888888776543
No 356
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=34.70 E-value=81 Score=28.94 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=50.8
Q ss_pred chHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC
Q 009647 308 VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 308 ~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~ 387 (530)
..+.+...+ .++++-++..++-++.......+ . ...+..+...+.+++..|++...|+|..++..+
T Consensus 121 ~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~~~------~-------~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 121 ALELLEKWA-KSDNEWVRRAAIVMLLRYIRKED------F-------DELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHCTTTHGGGCH------H-------HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHH-hCCcHHHHHHHHHHHHHHHHhcC------H-------HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 344555555 57777777777666555443311 1 135666677778888999999999999999988
Q ss_pred HHHHHHHHhC
Q 009647 388 VEHKQLIHSS 397 (530)
Q Consensus 388 ~~~~~~li~~ 397 (530)
++.....+..
T Consensus 187 ~~~v~~~l~~ 196 (213)
T PF08713_consen 187 PDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877766654
No 357
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=34.35 E-value=2.8e+02 Score=23.88 Aligned_cols=58 Identities=22% Similarity=0.450 Sum_probs=42.7
Q ss_pred HHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 361 LVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 361 L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
+++-|+....++++.|-++|-| .+..+ .+.+.+++.|+.++...|..-.+.|-.+|..
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~--~~~~e--------dL~~cIle~le~~~lN~R~nI~~fID~l~e~ 70 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN--RDMEE--------DLWSCILEQLEKENLNTRINIFYFIDSLCES 70 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc--cccHH--------HHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 3334555667899999999988 33222 3678899999998888888888888777653
No 358
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=34.05 E-value=7.8e+02 Score=31.84 Aligned_cols=254 Identities=17% Similarity=0.179 Sum_probs=124.3
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC--Cch-hhHHHhhchHHHHHH
Q 009647 196 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPA-TELIKVDGLLDAILR 272 (530)
Q Consensus 196 ~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~--~~~-~~~v~~~~~l~~L~~ 272 (530)
...|.|.++++-......-..+ -..+...+...+.+++.++..+++.+...... +.. ...-.....+..+..
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~ 535 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFV-----QQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLT 535 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHH
Confidence 5668888888765321111111 11133445567889999997777766543211 000 000002344444444
Q ss_pred Hhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCC
Q 009647 273 HLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH 351 (530)
Q Consensus 273 lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~ 351 (530)
+-. .+++.++......+. ..........+.+..+...+ ......++..+...+|+++.+++...-.-+.
T Consensus 536 ~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr--- 605 (2341)
T KOG0891|consen 536 VAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLR--- 605 (2341)
T ss_pred HhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHH---
Confidence 432 456666655544443 11122233333444444444 3566677888999999999887632111110
Q ss_pred CcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCC
Q 009647 352 GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTE 431 (530)
Q Consensus 352 ~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~ 431 (530)
...+..+-.+..+.-..+......-+.-+..+.+..+...++ ..+..++..+..++..+.+.+..++..+|...
T Consensus 606 ---~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~-- 679 (2341)
T KOG0891|consen 606 ---KTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVG-- 679 (2341)
T ss_pred ---HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhc--
Confidence 011111111112222222222222222222222233332322 24456666778888888999999999998752
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHc
Q 009647 432 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLR 479 (530)
Q Consensus 432 ~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~ 479 (530)
|. .....++ -+++.+.+.+.. +...-...++..+.+++.
T Consensus 680 --g~------~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 680 --GE------EMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred --cc------hhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 21 1223333 455555555543 333445567777777764
No 359
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=33.76 E-value=95 Score=28.49 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=69.2
Q ss_pred cHHHHHhhcCCCCHHHHHHH-HHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 180 LPLLIAHLGEKSSSPVAEQC-AWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 180 v~~L~~lL~~~~~~~v~~~a-~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
++.+-.++..-++..+.+.. ..+++.+..+. ....+.+...+.++++-.++.++-++.......
T Consensus 87 ~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~---------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~------ 151 (213)
T PF08713_consen 87 LELLEKWLPDIDNWATCDSLCSKLLGPLLKKH---------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKE------ 151 (213)
T ss_dssp HHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH---------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC------
T ss_pred HHHHHHHhccCCcchhhhHHHHHHHHHHHHhh---------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc------
Confidence 34555555555677777776 55566654311 234455666777888888888876665554331
Q ss_pred hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 009647 259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS 306 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~ 306 (530)
. ....+..+..++.+++.-++..+.|+|..++..+++.....+..
T Consensus 152 -~--~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 152 -D--FDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp -H--HHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred -C--HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 1 12455556666778888999999999999998777665555443
No 360
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.65 E-value=90 Score=32.80 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=52.0
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHH-hcC-CcHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFH-ENEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L-~~~-~~~~i~~~A~~il~~~ 521 (530)
++..|-.-+.+.++.++..||..|+.+.+.|+. .+...|-+-+.++.+..+ -++ .+..|++++..+|+.+
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~-~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGY-SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 456677778888889999999999998887764 244455566666654433 455 6789999999999977
No 361
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.05 E-value=3.1e+02 Score=23.37 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=52.9
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHH-HHHHhCCcHHHHHHHhcCC-Chh---HHHHHHHHHHHhc
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK-QLIHSSEALALLLHLLSTS-PFD---IKKEVAYVLGNLC 426 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~-~~li~~~~l~~Li~lL~~~-~~~---v~~eA~~aL~nl~ 426 (530)
.++..|..-|.++++.++..|+.+|--++..+.... ..+....++..|..++.+. ... |++.+...|..-.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 477888889999999999999999998887654444 4455557888999988543 333 7888877776554
No 362
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=32.91 E-value=1.1e+02 Score=23.86 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=46.3
Q ss_pred HhcCChHHHHhhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHH----HHHHhcCCcHHHHHHHHHHHHh
Q 009647 447 VGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA----MERFQFHENEDLRNMANGLVDK 520 (530)
Q Consensus 447 ~~~g~i~~L~~lL~-~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~----L~~L~~~~~~~i~~~A~~il~~ 520 (530)
.+..++.|+..++. ..+.+++...++++..++..... .+ .+| ++. |..-..++++++...|..+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~-----~i-~SG-W~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE-----NI-KSG-WKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH-----HH-Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 35567899999865 46889999999999999864321 12 233 333 3333456788999999888763
No 363
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=32.24 E-value=3.8e+02 Score=26.95 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=64.0
Q ss_pred CcHHHHHhhcCC-----C-CHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC----------CChhHHHHHH
Q 009647 179 ALPLLIAHLGEK-----S-SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP----------NKGSTVRTAA 242 (530)
Q Consensus 179 ~v~~L~~lL~~~-----~-~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~----------~~~~~~~~a~ 242 (530)
.+|.|+.++.+. . +..+....+..+..|.. ++.+.-...-+-.+|+++.++-+ .+..+++.|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 789999988652 1 34445555555555554 45444334444478888877632 2358899999
Q ss_pred HHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH--HHHHHHHHHHHHh
Q 009647 243 WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE--ELTTEVAWVVVYL 292 (530)
Q Consensus 243 ~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L 292 (530)
.+++.+|+..+.. ...+ ...++..+.+.+.++.. ....-|+..|..+
T Consensus 290 ~ll~~i~~~f~~~-y~~l--~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 290 RLLAQICRKFSTS-YNTL--QPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCC-CCcH--HHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999999754322 1212 23455566655554432 2345555555554
No 364
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=32.18 E-value=1.2e+02 Score=25.16 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=47.3
Q ss_pred hchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccch-hhhHHHHhhhhcC
Q 009647 264 DGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL-IPVLRSLGNLVAG 338 (530)
Q Consensus 264 ~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~-~~al~~L~nl~~~ 338 (530)
..++|.+.+.+. +..+|.+..+...++.|+...+ .+..++..+++.+..+...... .+++-+|..++..
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 467899999999 7788999999999999986322 2233445555555434333333 7888888888844
No 365
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=32.12 E-value=39 Score=33.96 Aligned_cols=33 Identities=12% Similarity=-0.147 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHH
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVG 46 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lr 46 (530)
+-||++-+ +.+.||.. +|++...|||+.+.|+.
T Consensus 211 ~lkMskqE-vKdE~Ke~EGdP~iK~r~R~~~re~~ 244 (342)
T TIGR01404 211 DLKMSKDE-VKREYKEQEGDPEIKSKRRELHQEIL 244 (342)
T ss_pred hCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45777766 88999955 99999999988766554
No 366
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=30.64 E-value=6.5e+02 Score=26.33 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhcCC---CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647 182 LLIAHLGEKSSSPVAEQCAWALGNVAGE---GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 250 (530)
Q Consensus 182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d---~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 250 (530)
.+...-.+++++..-....-+++.+... ...-.-.-++...+|++...|+.+-.+..-.+.-.|+.|.+
T Consensus 75 il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 75 ILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLE 146 (435)
T ss_dssp HHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555666655555555544321 11111124556678888888887655555555556666554
No 367
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=30.19 E-value=1.1e+02 Score=30.47 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=42.2
Q ss_pred HHHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC------cHHHHHHHHHHHH
Q 009647 453 SGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE------NEDLRNMANGLVD 519 (530)
Q Consensus 453 ~~L~~lL~~--~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~------~~~i~~~A~~il~ 519 (530)
..|..=|.. .+...+.++|..|+.++..+.+......-+..-.+..|..+++-+ ...|+++|..|+.
T Consensus 60 ~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~ 134 (336)
T KOG2056|consen 60 DVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLS 134 (336)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHH
Confidence 334433443 567888999999999998766522222333444566666665432 3578888888776
No 368
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=29.93 E-value=1.1e+02 Score=25.91 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=43.9
Q ss_pred hhHHHHHHHhccCc----HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647 356 QVIAVLVKCLKSEH----RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422 (530)
Q Consensus 356 ~~l~~L~~lL~~~~----~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL 422 (530)
.++..+.+++.... ..+...+..++......- ....+.+.++++.+.++|.+++ ++..|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 35556666664432 678889999999887643 3455677789999999996555 477777664
No 369
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=29.86 E-value=2.9e+02 Score=22.13 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=49.3
Q ss_pred hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647 355 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA 419 (530)
Q Consensus 355 ~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~ 419 (530)
...+..|+.+++.++.....++.-.+..++.+ +...+.+.+-|....|-++-..-++..+...-
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id 92 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEID 92 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHH
Confidence 35888999999998888899999999998775 46677788888888877766666666554443
No 370
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=29.46 E-value=4.2e+02 Score=26.17 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=58.1
Q ss_pred cCChhhhHhhcCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC---CHHHHHHHHHHHHHhhc
Q 009647 220 QGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA---DEELTTEVAWVVVYLSA 294 (530)
Q Consensus 220 ~g~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~L~~ 294 (530)
.|.+..++..+... +...+-..+.|+=.+.|+.++.....++...|.++.++..+-++ +.++.....-.|+.|..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 46667777666533 56778888889999999875533444666889999999877644 34688888889999988
Q ss_pred CCchh
Q 009647 295 LSNVA 299 (530)
Q Consensus 295 ~~~~~ 299 (530)
++...
T Consensus 174 ~n~~~ 178 (303)
T PF12463_consen 174 FNRDA 178 (303)
T ss_pred CCHHH
Confidence 66443
No 371
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=29.28 E-value=5.8e+02 Score=25.33 Aligned_cols=123 Identities=12% Similarity=0.134 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHhhc-C--------C----cHHHHHhhcCC-----CCHHHHHHHHHHHHhhcCCCchh
Q 009647 152 DEQLLEAAWCLTNIAAGKQEETKALL-P--------A----LPLLIAHLGEK-----SSSPVAEQCAWALGNVAGEGEEF 213 (530)
Q Consensus 152 ~~~~~eA~~~L~nia~~~~~~~~~i~-~--------~----v~~L~~lL~~~-----~~~~v~~~a~~~L~nla~d~~~~ 213 (530)
-.++..|+.|+..+..++++....++ . . ...+++-|-+. .++--.--|+.+|..+..++++.
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 45666789999999998887766555 1 1 22345444321 23333445888999999999999
Q ss_pred HHHHHhc--C----------ChhhhHhhcCC-----CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc
Q 009647 214 RNVLLSQ--G----------ALPPLARMMLP-----NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK 275 (530)
Q Consensus 214 r~~~~~~--g----------~i~~L~~lL~~-----~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~ 275 (530)
|+.++.- | .|+.+..+|.. .++.+.-..+..|+.-..+ +|....+++.....++.|+....
T Consensus 132 Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~~FL~~~s~l~~Li~~~~ 209 (312)
T PF04869_consen 132 KEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVNDFLSEGSNLQSLIEFSN 209 (312)
T ss_dssp HHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHHS
T ss_pred HHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHHHHHcCcchHHHHHHHhh
Confidence 8877643 1 23334444432 2455555555555544433 35555666666678888888754
No 372
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=28.98 E-value=2.8e+02 Score=24.48 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=45.0
Q ss_pred CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647 307 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 307 g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~ 386 (530)
|-+...++.+...+|..+....+.++.+....+.-..... ..++|.+..+|.+........|+-.+.-+...
T Consensus 28 ~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c--------~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 28 NDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLC--------VDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred CcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHH--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3444444444445666666666666664443332122222 25899999999999888888888888777554
No 373
>PRK09108 type III secretion system protein HrcU; Validated
Probab=28.54 E-value=51 Score=33.33 Aligned_cols=34 Identities=9% Similarity=-0.170 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHHh
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVGK 47 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lrk 47 (530)
+-||++-+ +.+.||.. +|++.+.|||+.+.++..
T Consensus 214 ~lkMSkqE-vK~E~K~~EGdP~iK~rrRq~~re~a~ 248 (353)
T PRK09108 214 DNRMSKDE-VKREHKESEGDPHIKGERKRLARELAF 248 (353)
T ss_pred HCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45777665 88899965 999999999887766553
No 374
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.46 E-value=1.2e+02 Score=30.24 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=37.1
Q ss_pred chhhHHHHHHHhccCc---HhHHHHHHHHHHHHhcCCH---HHHHHH---HhCCcHHHHHHH
Q 009647 354 TDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSV---EHKQLI---HSSEALALLLHL 406 (530)
Q Consensus 354 ~~~~l~~L~~lL~~~~---~~i~~~A~~~Lsnl~~~~~---~~~~~l---i~~~~l~~Li~l 406 (530)
+..++..|+.++..++ ..++..|+.+|..|+.... +.+.++ +.+|+++.+++-
T Consensus 263 dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR~ 324 (329)
T PF06012_consen 263 DPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLRK 324 (329)
T ss_pred ChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHHH
Confidence 3569999999998754 4899999999999987542 222222 246777777653
No 375
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=28.27 E-value=1.4e+02 Score=27.53 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=39.3
Q ss_pred HHHHHhcCChhhhHhhcCCC---C---------------hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc
Q 009647 214 RNVLLSQGALPPLARMMLPN---K---------------GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK 275 (530)
Q Consensus 214 r~~~~~~g~i~~L~~lL~~~---~---------------~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~ 275 (530)
++.+.+.|++..++.+|+.+ . ..+.+.+...|..+|++. ...... ....++.+...+.
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n--~~NQ~~--l~~~~~~l~~~~~ 111 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGN--RENQKY--LFKHLDFLISIFM 111 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT---HHHHHH--HHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhC--HHHHHH--HHHHHhHHHHHHH
Confidence 34555667777777666521 1 467888999999999873 222222 2344554433333
Q ss_pred cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 276 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 276 ~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
......-..+.-++..+..++.+-...+.+. .+..++.++..++- ...-+..|+.++..
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr---~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGR---QPRYLDFLSSLCVC 170 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-------------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCC---ChHHHHHHhhhccc
Confidence 2221122334555666666565555555443 47788887754231 12345555555543
No 376
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=28.18 E-value=2e+02 Score=25.10 Aligned_cols=44 Identities=30% Similarity=0.346 Sum_probs=30.2
Q ss_pred hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~ 386 (530)
..|+..||.+..|- -+.+|+.+|.+.+..+...|+.+|+|..--
T Consensus 81 ~~Av~LLGtM~GGY-----------------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 81 AEAVELLGTMLGGY-----------------NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp HHHHHHHTTS-SST-----------------THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred HHHHHHHhhccCCC-----------------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 46777777765442 478899999999999999999999986543
No 377
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.06 E-value=77 Score=31.65 Aligned_cols=54 Identities=2% Similarity=-0.120 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC--CCChhHHHHHHHHHHHhhcCC
Q 009647 199 CAWALGNVAGEGEEFRNVLLSQGALPPLARMML--PNKGSTVRTAAWALSNLIKGP 252 (530)
Q Consensus 199 a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~nL~~~~ 252 (530)
....++++|...++..|.+.+-|+++.+++-.. +.+|-+++....|+.+|..+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN 431 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNN 431 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcc
Confidence 677999999999999999999999999887544 557899999999999999763
No 378
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=28.00 E-value=52 Score=33.20 Aligned_cols=33 Identities=15% Similarity=-0.084 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHH
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVG 46 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lr 46 (530)
+-||++-+ +.+.||.. +|++...|||+.+.++-
T Consensus 212 ~lkMskqE-vKdE~Ke~EGdP~iK~rrR~~~re~~ 245 (349)
T PRK12721 212 QLKMSKDD-VKQEYKDSEGDPEIKQKRRELQSEIQ 245 (349)
T ss_pred HCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45777766 99999955 99999999887665543
No 379
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=27.93 E-value=49 Score=36.21 Aligned_cols=34 Identities=6% Similarity=-0.158 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHHh
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVGK 47 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lrk 47 (530)
+-||++-+ +.+.||.. +|++.+.|||+.+.|+.+
T Consensus 475 ~lkMskqE-vK~E~Ke~EGdP~iK~r~R~~~re~~~ 509 (609)
T PRK12772 475 DLRMTKQE-VKEEYKQDEGDPQIKAKIKQKQREMAM 509 (609)
T ss_pred hCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45777655 88899955 999999999887666543
No 380
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.85 E-value=1.8e+02 Score=33.23 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=67.2
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhh----cCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLS----ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~----~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
...++..-.++|.+++-.++..++-+|.+.. +.++.-...+ +..-+.+++.+ ...++-+...|+.+|-++...
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv--hq~W~~vie~~-~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV--HQTWPSVIECL-LCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH--HhhhhHHHHHH-hcCchHHHHHHHHHHHHHHHH
Confidence 3456666777888999899999998887654 3333333332 34577888888 478889999999999999987
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhcc
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLKS 367 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~ 367 (530)
..+..+.-+ -..++|.+-.++..
T Consensus 878 sgDFv~sR~------l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 878 SGDFVASRF------LEDVLPWLKHLCQD 900 (1014)
T ss_pred hhhHHHHHH------HHHHHHHHHHHHHH
Confidence 766543322 13578887776653
No 381
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=26.67 E-value=7.2e+02 Score=29.69 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=55.1
Q ss_pred cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647 323 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL 402 (530)
Q Consensus 323 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~ 402 (530)
.+++.+.++|+.+....+... + ...+..+.+++......++....-.+....+-..+....+.. .+++.
T Consensus 144 pVre~caq~L~~~l~~~~~s~--~--------~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~-~vl~~ 212 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHMDESL--I--------KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLN-LVLDF 212 (1549)
T ss_pred hhHHHHHHHHHHHHHhhhhHh--h--------HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 456677888888776543321 1 135666777776665555544444333322211122222221 25677
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 403 LLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 403 Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
.+.-|.+.+.+++..|+..+.-++.
T Consensus 213 ~i~~L~ds~ddv~~~aa~~l~~~~s 237 (1549)
T KOG0392|consen 213 VIEGLEDSDDDVRSVAAQFLVPAPS 237 (1549)
T ss_pred HHhhhhhcchHHHHHHHHHhhhhhH
Confidence 7788899999999999998876653
No 382
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=26.23 E-value=67 Score=32.37 Aligned_cols=33 Identities=21% Similarity=-0.049 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHH
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVG 46 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lr 46 (530)
+-||++-+ +.+.||.+ +|++.+.|||+.+.|+.
T Consensus 214 ~lkMskqE-vK~E~Ke~EGdP~iK~rrR~~~re~~ 247 (343)
T PF01312_consen 214 KLKMSKQE-VKDEHKESEGDPEIKSRRRQLQREMA 247 (343)
T ss_dssp ---HHHHH-H--HHHCCCC-HHHHHHHHHHHHHHH
T ss_pred hCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45777665 88899955 99999999998877776
No 383
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=26.22 E-value=3.9e+02 Score=22.35 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHH
Q 009647 108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCL 162 (530)
Q Consensus 108 ~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L 162 (530)
.+....++.++..+++ -.+...+.+.+.++.++++|..++ .+..|+.||
T Consensus 100 ~~~~~~~L~~l~s~i~---~~~~~~i~~~~~l~~~~~~l~~~~---~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS---WIPIELIINSNLLNLIFQLLQSPE---LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTT---TS-HHHHHSSSHHHHHHHHTTSCC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hCCHHHhccHHHHHHHHHHcCCHH---HHHHHHHhC
Confidence 7778889999999876 455677888889999999997544 345577665
No 384
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.02 E-value=3.2e+02 Score=28.65 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=66.1
Q ss_pred CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647 307 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 307 g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~ 386 (530)
|-+..|++-|..++.+.+-..-+.+|..++..++++.. .....|+.++.+.+..+|..++.++-.+...
T Consensus 6 ~kl~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee~~-----------~~~~~L~~~~~~~h~~vR~l~lqii~elF~r 74 (661)
T KOG2374|consen 6 GKLIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEEVR-----------LSSQTLMELMRHNHSQVRYLTLQIIDELFMR 74 (661)
T ss_pred hHHHHHHHHHhhcCCcccChHHHHHHHHHHhccHHHHH-----------HHHHHHHHHHhhcCchHHHHHHHHHHHHHHh
Confidence 34566777776777777777788999999988877632 3778899999999999999999999999887
Q ss_pred CHHHHHHHHhCCcHHHHHHHh
Q 009647 387 SVEHKQLIHSSEALALLLHLL 407 (530)
Q Consensus 387 ~~~~~~~li~~~~l~~Li~lL 407 (530)
++.....+++. +..++.+.
T Consensus 75 s~~FR~lii~n--~~efLeL~ 93 (661)
T KOG2374|consen 75 SKLFRTLIIEN--LDEFLELS 93 (661)
T ss_pred hHHHHHHHHhC--HHHHHHHh
Confidence 76666656553 34444443
No 385
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=25.68 E-value=9.3e+02 Score=26.56 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHHHHHHhhcCCchhHHHHHh----cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCC
Q 009647 276 RADEELTTEVAWVVVYLSALSNVATSLLVK----SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH 351 (530)
Q Consensus 276 ~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~----~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~ 351 (530)
.-..+++..|+-+|..+..+.. ....+++ ...+..++..+. .++.-+.-++|+|.|+..+.... + .+..-
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~-~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~-~-~~~s~- 628 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHS-SNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGR-E-LFMSR- 628 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccc-hhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHH-H-HHHHH-
Confidence 3345566666666766665332 2222222 234445555442 44556678999999998773221 1 11100
Q ss_pred CcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC-----CChhHHHHHHHHHHHhc
Q 009647 352 GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-----SPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 352 ~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~-----~~~~v~~eA~~aL~nl~ 426 (530)
....+..+.+.-..++..++...+...-|.+.. .++.--+.+..+.|..++.. .+.+-...+..||++++
T Consensus 629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 629 --LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 011222333332333455555555444454321 11111123444444444422 23333445666888888
Q ss_pred CC
Q 009647 427 VS 428 (530)
Q Consensus 427 ~~ 428 (530)
..
T Consensus 704 t~ 705 (745)
T KOG0301|consen 704 TV 705 (745)
T ss_pred cc
Confidence 64
No 386
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=25.60 E-value=3.8e+02 Score=22.01 Aligned_cols=67 Identities=25% Similarity=0.297 Sum_probs=43.9
Q ss_pred hhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCChhH-HHHHHHHHHHhcCC
Q 009647 356 QVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDI-KKEVAYVLGNLCVS 428 (530)
Q Consensus 356 ~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~~~v-~~eA~~aL~nl~~~ 428 (530)
.++|.+...|. +..++.+..+.-+++.++...+-. . .++..+++.+ .+..... .+.+..+|..++..
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~-----~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-D-----EVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-H-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 47888889888 667899999999999998753211 1 1233333332 3332222 57899999988864
No 387
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.71 E-value=2.6e+02 Score=31.91 Aligned_cols=73 Identities=12% Similarity=-0.014 Sum_probs=56.5
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHH---hcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNI---AAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl---~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 429 (530)
.++..-..+|+|.+..+|..|.-+++-. -+..+...-.++. ...|.++..+...++-+...|+.+|.+++..+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 5777788899999999999999998743 2333333333333 47999999999999999999999999998643
No 388
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.62 E-value=61 Score=33.90 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=51.7
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
.....+-.+..+.++.++.+|..+++|++.+.......+-+..+-..+++++..+.+++-+.|+.|+.-+.
T Consensus 328 ~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 328 DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 35556666777889999999999999998875333322223345566778888888888888888887654
No 389
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=24.28 E-value=67 Score=32.39 Aligned_cols=33 Identities=15% Similarity=-0.098 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHH
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVG 46 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lr 46 (530)
+-||++-+ +.+.||.+ +|++...|||+.+.++.
T Consensus 212 ~lrMskqE-VKdE~K~~EGdP~iK~rrR~~~re~a 245 (347)
T TIGR00328 212 SLKMTKQE-VKDELKQSEGDPEVKGRIRQMQREAA 245 (347)
T ss_pred hCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45777666 88899965 99999999887766554
No 390
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=24.12 E-value=2.7e+02 Score=22.59 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=47.9
Q ss_pred CchHHHHHHHhc---CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc--CcHhHHHHHHHHHH
Q 009647 307 GVLQLLVERLAT---SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLS 381 (530)
Q Consensus 307 g~l~~Lv~lL~~---~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~--~~~~i~~~A~~~Ls 381 (530)
|++..+-+.+.+ ..+..-+..++++|+.+..-.... + ..+.|.+...|++ ..++++..|+.+..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~----i-------~~~~pQI~a~L~sal~~~~l~~~al~~W~ 79 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSH----I-------SSARPQIMACLQSALEIPELREEALSCWN 79 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHH----H-------HHHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence 444555554533 344455678999999988632222 1 2467777777764 34578888888777
Q ss_pred HHhcC-CHHHHHHHHh
Q 009647 382 NIAAG-SVEHKQLIHS 396 (530)
Q Consensus 382 nl~~~-~~~~~~~li~ 396 (530)
.+... +++....+++
T Consensus 80 ~fi~~L~~~~l~~ll~ 95 (107)
T PF08064_consen 80 CFIKTLDEEDLGPLLD 95 (107)
T ss_pred HHHHHCCHHHHHHHHH
Confidence 76654 4455555544
No 391
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.90 E-value=69 Score=32.48 Aligned_cols=34 Identities=18% Similarity=-0.080 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHHh
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVGK 47 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lrk 47 (530)
+-||++-+ +.+.||.. +|++.+.|||+.+.++.+
T Consensus 219 ~lkMskqE-VKdE~Ke~EGdP~iK~rrR~~~re~a~ 253 (359)
T PRK05702 219 KLKMTKQE-VKDEHKQSEGDPEVKGRIRQLQREMAR 253 (359)
T ss_pred hCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45777666 88899955 999999999887666543
No 392
>PRK06298 type III secretion system protein; Validated
Probab=23.65 E-value=70 Score=32.36 Aligned_cols=33 Identities=21% Similarity=0.042 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHH
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVG 46 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lr 46 (530)
+-||++-+ +.+.||.. +|++...|||+.+.++.
T Consensus 213 ~lkMSkqE-vKdE~K~~EGdP~iK~rrR~~~re~~ 246 (356)
T PRK06298 213 ELKMEKFE-VKQEFKDTEGNPEIKGRRRQIAQEIA 246 (356)
T ss_pred HCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 44677666 88899955 99999999887666554
No 393
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=23.61 E-value=4.5e+02 Score=23.02 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=47.7
Q ss_pred hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHH-HhcCCC--hhHHHHHHHHHHHhcCC
Q 009647 355 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLH-LLSTSP--FDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 355 ~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~-lL~~~~--~~v~~eA~~aL~nl~~~ 428 (530)
..+.+.+.+.+.+.++.+-..++.++.++...-....+.=++. +++.++. ++.+.. ...|..++.++..+|..
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~-~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV-FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 4577888888877778888888888888875432222222221 3455555 555433 46677788999999864
No 394
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=23.56 E-value=2.1e+02 Score=23.92 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHHHhhhccC-CHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC-C-----cHHHHHHHHHHHHhhcCC
Q 009647 453 SGFIDLVRSA-DIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH-E-----NEDLRNMANGLVDKYFGE 524 (530)
Q Consensus 453 ~~L~~lL~~~-d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~-~-----~~~i~~~A~~il~~~f~~ 524 (530)
..|..-|... ++.++.++|-.|..+++.+..............+..|..++.. + ..-|+++|..|.+....+
T Consensus 42 ~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l~~~ 120 (127)
T smart00273 42 AVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEALRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDD 120 (127)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHHcCH
Confidence 3444444444 7889999999999999876431111111222344456666543 1 346899998888876543
No 395
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.45 E-value=71 Score=32.35 Aligned_cols=33 Identities=12% Similarity=-0.138 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHH
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVG 46 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lr 46 (530)
+-||++-+ +.+.||.. +|++...|||+.+.++.
T Consensus 221 ~lkMSkqE-VKdE~Ke~EGdP~iK~r~Rq~~re~~ 254 (358)
T PRK13109 221 SLRMTKQE-IKDEHKQAEGDPSVKARLRSLAQDRA 254 (358)
T ss_pred HCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45677665 88899955 99999999887766554
No 396
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=23.42 E-value=8.2e+02 Score=25.12 Aligned_cols=241 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
.++.|..++ .++.....-|.+-+-++..+.+ -+...++..=+.+...++ ..++++|..-|--+|.|
T Consensus 26 ~y~~il~~~----k~~~k~k~lasq~ip~~fk~fp------~la~~a~da~~d~~ed~d-~~ir~qaik~lp~fc~~--- 91 (460)
T KOG2213|consen 26 DYEGILKAV----KGTSKEKRLASQFIPRFFKHFP------SLADEAIDAQLDLCEDDD-VGIRRQAIKGLPLFCKG--- 91 (460)
T ss_pred HHHHHHHHh----hcchHHHHHHHHHHHHHHhhCc------hhhhHHHHhhhccccccc-hhhHHHHHhccchhccC---
Q ss_pred hHHhhcCCcHHHHHhhcCC-----------CCHHHHHHHHH-HHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHH
Q 009647 172 ETKALLPALPLLIAHLGEK-----------SSSPVAEQCAW-ALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVR 239 (530)
Q Consensus 172 ~~~~i~~~v~~L~~lL~~~-----------~~~~v~~~a~~-~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~ 239 (530)
+.+.-..+.|+++|... .+..+++.+.. +...+..-..++-..-++..++.-+-..|.+-+-+-..
T Consensus 92 --d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~ 169 (460)
T KOG2213|consen 92 --DALSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFT 169 (460)
T ss_pred --chhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHH
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH--hccCCHHHHHHHHHHHH----HhhcC-CchhHHHHHhcCchHHH
Q 009647 240 TAAWALSNLIKGPDPKPATELIKVDGLLDAILRH--LKRADEELTTEVAWVVV----YLSAL-SNVATSLLVKSGVLQLL 312 (530)
Q Consensus 240 ~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~l--L~~~d~~v~~~a~~~L~----~L~~~-~~~~~~~i~~~g~l~~L 312 (530)
...-.|+++.....-.+..+++........+..+ +...|++.+...+.|+. +.+.+ +....-..+...++|.
T Consensus 170 lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~- 248 (460)
T KOG2213|consen 170 LFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH- 248 (460)
T ss_pred HHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc-
Q ss_pred HHHHhcCCC---ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh
Q 009647 313 VERLATSNS---LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL 365 (530)
Q Consensus 313 v~lL~~~~~---~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL 365 (530)
+-+ .+.+...|++|+.+++.. ..|..-+ .+|.++.+|
T Consensus 249 ------~fdkl~e~rkL~lLK~lAEMss~t--taq~a~q--------~Lpsi~elL 288 (460)
T KOG2213|consen 249 ------HFDKLTEERKLDLLKALAEMSSYT--TAQAARQ--------MLPSIVELL 288 (460)
T ss_pred ------ccccchHHHHHHHHHHHHHhCccc--hHHHHHH--------HHHHHHHHH
No 397
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.34 E-value=3.7e+02 Score=28.37 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=62.4
Q ss_pred hccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 009647 365 LKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV 444 (530)
Q Consensus 365 L~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~ 444 (530)
|..+|..+-.+.|-.|..--.+.. .++..|.+.+.+.++.++.-|+.+|--++.+| |. ..-.
T Consensus 14 l~~pDWa~NleIcD~IN~~~~~~~---------eAvralkKRi~~k~s~vq~lALtlLE~cvkNC----G~-----~fh~ 75 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINSTEGGPK---------EAVRALKKRLNSKNSKVQLLALTLLETCVKNC----GY-----SFHL 75 (470)
T ss_pred ccCccHHHHHHHHHHHhcCccCcH---------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh----hH-----HHHH
Confidence 344555555565555543322332 25666777788888888888888777776554 42 2223
Q ss_pred HHHhcCChHHHHhhhccC--CHHHHHHHHHHHHH
Q 009647 445 SLVGRGCLSGFIDLVRSA--DIEAARLGLQFMEL 476 (530)
Q Consensus 445 ~l~~~g~i~~L~~lL~~~--d~~i~~~~L~~L~~ 476 (530)
.+.+.+++.-++.+.+.. +.+++..+|..|..
T Consensus 76 ~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 76 QVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 667889999999988875 56788888887754
No 398
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=23.32 E-value=2.3e+02 Score=23.10 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=47.9
Q ss_pred CchHHHHHHHhcCC---CccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc--CcHhHHHHHHHHHH
Q 009647 307 GVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLS 381 (530)
Q Consensus 307 g~l~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~--~~~~i~~~A~~~Ls 381 (530)
|++..+-+.+.+.. +..-+..++++++.+..-... . + ..+.|.+..+|.+ ..++++..|+.+..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~---~-i-------~~a~pQI~acL~saL~~~eL~~~al~~W~ 79 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGK---H-I-------SSALPQIMACLQSALEIPELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH---H-H-------HHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 44555555553221 222367889999988863221 1 2 2477777777765 35678999888887
Q ss_pred HHhcC-CHHHHHHHHh
Q 009647 382 NIAAG-SVEHKQLIHS 396 (530)
Q Consensus 382 nl~~~-~~~~~~~li~ 396 (530)
.+... +++....+++
T Consensus 80 ~~i~~L~~~~l~~ll~ 95 (107)
T smart00802 80 VLIKTLKEEELGPLLD 95 (107)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 77654 4455555555
No 399
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.66 E-value=82 Score=31.93 Aligned_cols=33 Identities=12% Similarity=-0.089 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHH
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVG 46 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lr 46 (530)
+-||++-+ +.+.||.. +|++.+.|||+.+.++-
T Consensus 207 ~lkMSkqE-vKdE~Ke~EGdP~iK~r~R~~~re~a 240 (361)
T PRK08156 207 DMKMDKQE-VKREYKEQEGNPEIKSKRREAHQEIL 240 (361)
T ss_pred HCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 44677655 88899955 99999999887666543
No 400
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.66 E-value=2.9e+02 Score=28.23 Aligned_cols=110 Identities=13% Similarity=0.187 Sum_probs=76.8
Q ss_pred hHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC-
Q 009647 309 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS- 387 (530)
Q Consensus 309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~- 387 (530)
+..|+..+ .|-+..++..|+.-|--+....+...+.-. ..+++.+..+..+.+..+|.....++-++....
T Consensus 60 lkeLl~ql-kHhNakvRkdal~glkd~l~s~p~~l~~~~-------~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 60 LKELLSQL-KHHNAKVRKDALNGLKDLLKSHPAELQSHL-------YALLQKLRELILDDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHHHhhh-cCchHhhhHHHHHHHHHHHHhChHHHHHHH-------HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc
Confidence 34455556 588889999999999888766444333222 247777888888888899999998888866543
Q ss_pred HHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 388 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 388 ~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
++....++. =+++.+-..+.+..+.+|..+...+.-+..
T Consensus 132 ~e~~sp~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~ 170 (393)
T KOG2149|consen 132 KEDQSPMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLE 170 (393)
T ss_pred hhhhcchHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHH
Confidence 233222222 245666677888899999999998888865
No 401
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.36 E-value=83 Score=32.25 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHH
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVG 46 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lr 46 (530)
+-||++-+ +.+.||.. +|++...|||+.+.++.
T Consensus 219 ~lkMSkqE-vKdE~K~~EGdP~iK~r~Rq~~re~a 252 (386)
T PRK12468 219 KLRMTKQD-IRDEFKNQEGDPHVKGRIRQQQRAMA 252 (386)
T ss_pred HCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 44677665 88899955 99999999887666553
No 402
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=20.80 E-value=3.1e+02 Score=24.82 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=49.3
Q ss_pred cCChHHHHhhhcc---CCHHHHHHHHHHHHHHHccCCCCcc----hhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 449 RGCLSGFIDLVRS---ADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 449 ~g~i~~L~~lL~~---~d~~i~~~~L~~L~~il~~~~~~~~----~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
.+=..+++..+.. .+.+....++.++..++..+++-.. +..+...|-.+.++.|...+++.+..+.....+..
T Consensus 20 ~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~lr~e~~~~GL~~il~~l~~~~~~~L~~Qi~~f~~~~ 99 (197)
T PF06367_consen 20 RGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVHLRNEFERLGLLDILEKLRNLEDDDLQEQIDIFEENE 99 (197)
T ss_dssp S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTTHHHHHHHHTTS--HHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCcHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4455777887774 5577888889988888877655322 35677888888999999999998887765544433
No 403
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.64 E-value=77 Score=34.23 Aligned_cols=33 Identities=21% Similarity=-0.098 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHHH
Q 009647 13 KRKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTVG 46 (530)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~lr 46 (530)
+-||++-+ +.+.||.. +|++.+.|||+.+.++.
T Consensus 510 kLKMSKQE-VKdE~KEsEGDPeIKaRRRqlqREma 543 (646)
T PRK12773 510 SLKMTPSE-AKREAKESDGDRSLQARRRQLARDMM 543 (646)
T ss_pred HCCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34677665 88899955 99999999887766554
No 404
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=20.61 E-value=2.4e+02 Score=25.88 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC
Q 009647 154 QLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN 233 (530)
Q Consensus 154 ~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~ 233 (530)
+...+...|..++.++.++...+..-++.++..+.. .....--.+.-+|..+-.|+++....+.+.. |..++.++...
T Consensus 77 l~~~~~~lL~~f~~~n~~NQ~~l~~~~~~l~~~~~~-~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~ 154 (207)
T PF01365_consen 77 LFRLCYRLLRQFCRGNRENQKYLFKHLDFLISIFMQ-LQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKH 154 (207)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH-----HHC-CCH-TTHHHHHHHHHHHTT------------------------
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHHHH-hhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHc
Confidence 435588999999999877766666666644444332 1111112456666777777887777776655 88888888652
Q ss_pred ChhHHHHHHHHHHHhhcC
Q 009647 234 KGSTVRTAAWALSNLIKG 251 (530)
Q Consensus 234 ~~~~~~~a~~~L~nL~~~ 251 (530)
. -.....-.|+.+|..
T Consensus 155 g--r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 155 G--RQPRYLDFLSSLCVC 170 (207)
T ss_dssp ------------------
T ss_pred C--CChHHHHHHhhhccc
Confidence 2 112233445555543
No 405
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.55 E-value=2e+02 Score=23.77 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=30.9
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHh
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS 219 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~ 219 (530)
+++.|++-|.+ ++++|...|+.+|...|.+. .+...++.
T Consensus 9 ~i~lLv~QL~D-~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYD-PSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 67888888977 78899999999999999865 44444443
Done!