Query 009647
Match_columns 530
No_of_seqs 356 out of 2442
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.4E-74 4.6E-79 618.0 38.0 475 25-529 16-503 (529)
2 3ul1_B Importin subunit alpha- 100.0 3.2E-67 1.1E-71 558.2 39.7 459 40-530 16-485 (510)
3 4b8j_A Importin subunit alpha- 100.0 1.1E-61 3.7E-66 518.8 43.2 473 24-529 16-502 (528)
4 1wa5_B Importin alpha subunit; 100.0 2.6E-60 8.9E-65 508.3 32.2 497 10-528 2-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 2.8E-49 9.7E-54 413.4 39.2 416 93-530 22-450 (450)
6 3nmz_A APC variant protein; pr 100.0 1.2E-45 4E-50 381.6 27.2 366 92-482 30-453 (458)
7 1xm9_A Plakophilin 1; armadill 100.0 1.3E-42 4.4E-47 363.6 35.2 362 138-526 3-452 (457)
8 3now_A UNC-45 protein, SD10334 100.0 2.4E-43 8.2E-48 383.6 28.2 366 92-481 378-784 (810)
9 1xm9_A Plakophilin 1; armadill 100.0 1.6E-39 5.5E-44 340.1 29.7 361 93-480 4-450 (457)
10 3ul1_B Importin subunit alpha- 100.0 9.3E-39 3.2E-43 339.2 32.6 365 138-523 58-430 (510)
11 1jdh_A Beta-catenin; beta-cate 100.0 2.3E-38 8E-43 337.7 35.3 405 96-521 103-528 (529)
12 2z6h_A Catenin beta-1, beta-ca 100.0 3E-38 1E-42 345.2 36.6 407 97-526 101-550 (644)
13 3now_A UNC-45 protein, SD10334 100.0 4.8E-39 1.6E-43 349.9 28.7 396 101-521 337-780 (810)
14 3tpo_A Importin subunit alpha- 100.0 8.8E-38 3E-42 333.4 34.2 365 138-523 77-449 (529)
15 3l6x_A Catenin delta-1; cateni 100.0 4.7E-38 1.6E-42 331.7 30.9 361 93-479 50-476 (584)
16 4b8j_A Importin subunit alpha- 100.0 1.6E-37 5.4E-42 331.7 35.4 366 136-523 73-443 (528)
17 3l6x_A Catenin delta-1; cateni 100.0 1.4E-37 4.9E-42 328.0 32.7 372 134-525 45-478 (584)
18 1wa5_B Importin alpha subunit; 100.0 2E-36 6.8E-41 323.3 37.8 369 136-524 86-458 (530)
19 2z6g_A B-catenin; FULL-length, 100.0 3.3E-35 1.1E-39 326.6 37.1 404 96-522 236-662 (780)
20 2jdq_A Importin alpha-1 subuni 100.0 1.2E-35 4.1E-40 310.1 30.0 371 92-480 65-444 (450)
21 3nmz_A APC variant protein; pr 100.0 1.2E-34 4E-39 299.4 26.6 326 93-428 72-451 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 1.3E-33 4.3E-38 301.1 30.5 399 92-523 60-489 (529)
23 3nmw_A APC variant protein; AR 100.0 7E-34 2.4E-38 285.3 23.2 272 192-482 45-337 (354)
24 2z6h_A Catenin beta-1, beta-ca 100.0 2.8E-32 9.7E-37 297.9 33.0 400 92-524 57-487 (644)
25 2z6g_A B-catenin; FULL-length, 100.0 1E-31 3.4E-36 298.6 32.4 398 92-522 193-621 (780)
26 3nmw_A APC variant protein; AR 100.0 2.7E-32 9.3E-37 273.8 24.4 265 155-428 49-335 (354)
27 4hxt_A De novo protein OR329; 100.0 1.5E-28 5.1E-33 235.6 23.9 242 178-429 2-243 (252)
28 4hxt_A De novo protein OR329; 100.0 8.3E-28 2.8E-32 230.4 23.0 240 137-387 2-243 (252)
29 4db8_A Armadillo-repeat protei 100.0 3.4E-28 1.1E-32 233.7 18.9 239 179-427 13-251 (252)
30 1xqr_A HSPBP1 protein; armadil 100.0 1.1E-27 3.9E-32 234.0 19.9 225 280-527 55-291 (296)
31 4db8_A Armadillo-repeat protei 100.0 1E-27 3.4E-32 230.4 18.7 238 137-385 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 2E-25 6.8E-30 238.5 22.1 320 102-427 342-728 (778)
33 4db6_A Armadillo repeat protei 99.9 8.5E-24 2.9E-28 197.1 20.8 200 219-427 10-209 (210)
34 4db6_A Armadillo repeat protei 99.9 1E-23 3.5E-28 196.5 20.8 199 263-478 10-208 (210)
35 3opb_A SWI5-dependent HO expre 99.9 1E-22 3.4E-27 217.7 30.3 391 106-523 268-728 (778)
36 1xqr_A HSPBP1 protein; armadil 99.9 3.4E-24 1.2E-28 209.4 14.6 182 153-339 55-240 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 1.6E-21 5.5E-26 182.5 16.4 196 138-338 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 4.6E-20 1.6E-24 172.6 15.8 197 222-428 9-230 (233)
39 4fdd_A Transportin-1; heat rep 99.7 8.8E-17 3E-21 181.0 23.0 349 100-482 96-474 (852)
40 1oyz_A Hypothetical protein YI 99.7 3.5E-16 1.2E-20 152.2 21.9 259 133-476 19-279 (280)
41 2vgl_B AP-2 complex subunit be 99.7 1.2E-15 4.2E-20 164.3 27.2 372 93-522 15-456 (591)
42 4fdd_A Transportin-1; heat rep 99.7 3.2E-16 1.1E-20 176.4 22.6 396 95-522 49-470 (852)
43 1b3u_A Protein (protein phosph 99.7 1.8E-15 6E-20 162.6 26.9 371 105-522 214-586 (588)
44 3grl_A General vesicular trans 99.7 2.8E-14 9.7E-19 148.9 33.9 321 91-428 21-395 (651)
45 1b3u_A Protein (protein phosph 99.7 3.1E-15 1.1E-19 160.7 27.4 375 102-523 172-548 (588)
46 1oyz_A Hypothetical protein YI 99.7 9E-15 3.1E-19 142.2 23.3 254 178-519 23-278 (280)
47 3grl_A General vesicular trans 99.6 1E-12 3.4E-17 137.3 30.7 414 93-523 62-550 (651)
48 2bpt_A Importin beta-1 subunit 99.6 4.2E-14 1.5E-18 158.9 21.5 386 101-518 273-706 (861)
49 2vgl_B AP-2 complex subunit be 99.6 7.8E-13 2.7E-17 142.4 28.5 287 101-426 128-418 (591)
50 1w63_A Adapter-related protein 99.6 5.1E-13 1.7E-17 144.5 27.1 356 93-520 36-411 (618)
51 2bpt_A Importin beta-1 subunit 99.6 7.7E-14 2.6E-18 156.9 19.3 344 108-481 345-713 (861)
52 1ibr_B P95, importin beta-1 su 99.5 4.2E-13 1.4E-17 139.5 23.0 388 96-523 3-437 (462)
53 1qgr_A Protein (importin beta 99.5 5.3E-13 1.8E-17 150.3 22.6 382 107-521 341-825 (876)
54 3ltj_A Alpharep-4; protein eng 99.5 1.1E-12 3.7E-17 120.7 19.3 183 179-426 15-197 (201)
55 3ltm_A Alpha-REP4; protein eng 99.5 4.9E-13 1.7E-17 124.1 17.1 185 179-428 20-204 (211)
56 1qgr_A Protein (importin beta 99.5 3.4E-12 1.2E-16 143.7 26.6 368 92-483 129-541 (876)
57 1ibr_B P95, importin beta-1 su 99.5 3.6E-13 1.2E-17 140.0 16.1 353 106-481 49-439 (462)
58 1u6g_C TIP120 protein, CAND1; 99.5 1E-11 3.5E-16 145.1 28.3 397 95-522 7-462 (1230)
59 1w63_A Adapter-related protein 99.5 1.1E-11 3.6E-16 134.1 26.1 367 102-521 150-575 (618)
60 3ltm_A Alpha-REP4; protein eng 99.4 4.1E-12 1.4E-16 117.8 18.4 188 136-387 18-205 (211)
61 3ltj_A Alpharep-4; protein eng 99.4 8.2E-12 2.8E-16 114.8 19.1 185 136-384 13-197 (201)
62 1u6g_C TIP120 protein, CAND1; 99.3 1.2E-10 4E-15 136.2 22.9 395 99-522 53-505 (1230)
63 2vgl_A Adaptor protein complex 99.3 5.3E-09 1.8E-13 112.8 32.1 331 92-478 36-397 (621)
64 4gmo_A Putative uncharacterize 99.2 3.6E-11 1.2E-15 131.3 13.0 199 179-384 35-257 (684)
65 4gmo_A Putative uncharacterize 99.0 5E-10 1.7E-14 122.3 10.8 195 222-426 35-257 (684)
66 3tjz_B Coatomer subunit gamma; 99.0 1.2E-08 4.2E-13 100.9 17.4 305 107-473 40-347 (355)
67 2vgl_A Adaptor protein complex 99.0 2.7E-07 9.4E-12 99.3 28.7 321 102-479 82-433 (621)
68 3b2a_A TON_1937, putative unch 98.9 1.4E-07 4.8E-12 85.3 19.8 225 264-520 32-258 (265)
69 4ady_A RPN2, 26S proteasome re 98.8 4.5E-07 1.5E-11 99.4 21.4 273 139-481 394-678 (963)
70 3tjz_B Coatomer subunit gamma; 98.7 3E-07 1E-11 90.9 14.6 274 179-516 69-346 (355)
71 2db0_A 253AA long hypothetical 98.6 1.1E-05 3.7E-10 70.1 21.5 213 179-427 33-246 (253)
72 4ady_A RPN2, 26S proteasome re 98.6 1.3E-05 4.4E-10 88.0 26.8 287 154-522 374-675 (963)
73 2qk2_A LP04448P; mini spindles 98.6 3.8E-07 1.3E-11 86.1 12.5 184 225-427 19-205 (242)
74 1te4_A Conserved protein MTH18 98.6 8.7E-09 3E-13 87.6 0.2 122 263-425 10-131 (131)
75 3b2a_A TON_1937, putative unch 98.5 1.9E-06 6.4E-11 78.0 15.1 187 307-524 33-219 (265)
76 1te4_A Conserved protein MTH18 98.5 5.1E-08 1.7E-12 82.8 3.9 120 306-476 11-130 (131)
77 2qk2_A LP04448P; mini spindles 98.4 1.2E-06 4.1E-11 82.6 12.1 179 104-294 25-205 (242)
78 2qk1_A Protein STU2; STU2P, XM 98.4 1.3E-06 4.5E-11 82.7 10.6 209 269-492 20-233 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.4 6.1E-06 2.1E-10 78.1 14.9 192 226-426 21-219 (249)
80 1ho8_A Vacuolar ATP synthase s 98.4 8.7E-05 3E-09 75.1 23.4 320 94-426 80-475 (480)
81 4hat_C Exportin-1; heat repeat 98.2 0.00053 1.8E-08 77.7 27.5 340 105-483 206-622 (1023)
82 2x1g_F Cadmus; transport prote 98.2 0.00029 1E-08 80.0 25.8 340 109-481 204-617 (971)
83 1ho8_A Vacuolar ATP synthase s 98.2 0.0015 5.3E-08 66.0 27.6 324 179-521 78-474 (480)
84 1wa5_C Importin alpha RE-expor 98.1 0.0022 7.6E-08 72.6 30.5 310 99-428 128-526 (960)
85 2db0_A 253AA long hypothetical 98.1 0.00031 1.1E-08 61.0 17.4 216 136-385 31-246 (253)
86 3m1i_C Exportin-1; heat repeat 98.0 0.0019 6.5E-08 74.0 28.1 342 105-482 206-621 (1049)
87 2iw3_A Elongation factor 3A; a 98.0 0.0011 3.6E-08 73.9 23.9 297 99-426 19-323 (986)
88 2x1g_F Cadmus; transport prote 97.9 0.0015 5.2E-08 74.1 25.5 298 106-427 256-615 (971)
89 2iw3_A Elongation factor 3A; a 97.9 0.00091 3.1E-08 74.4 21.3 288 196-521 31-322 (986)
90 4hat_C Exportin-1; heat repeat 97.9 0.0006 2E-08 77.3 20.3 144 146-295 460-619 (1023)
91 1wa5_C Importin alpha RE-expor 97.8 4.5E-05 1.5E-09 86.6 10.5 253 156-426 379-669 (960)
92 2x19_B Importin-13; nuclear tr 97.8 0.00068 2.3E-08 76.8 18.9 341 152-524 462-847 (963)
93 3c2g_A SYS-1 protein; beta-cat 97.7 0.0045 1.5E-07 59.2 19.1 297 198-521 262-616 (619)
94 2x19_B Importin-13; nuclear tr 97.6 0.015 5.3E-07 65.6 27.7 335 104-482 459-849 (963)
95 3dad_A FH1/FH2 domain-containi 97.6 0.00058 2E-08 65.8 13.2 189 270-469 123-326 (339)
96 3dad_A FH1/FH2 domain-containi 97.6 0.0017 5.8E-08 62.6 15.8 155 359-526 121-289 (339)
97 3ibv_A Exportin-T; karyopherin 97.5 0.0028 9.4E-08 71.7 19.1 310 105-429 204-568 (980)
98 3oc3_A Helicase MOT1, MOT1; re 97.3 0.013 4.4E-07 59.9 17.8 249 101-422 181-431 (800)
99 3gjx_A Exportin-1; transport, 97.0 0.25 8.4E-06 56.0 27.2 339 105-483 218-648 (1073)
100 3m1i_C Exportin-1; heat repeat 96.9 0.11 3.8E-06 59.3 24.5 111 358-481 453-571 (1049)
101 3ibv_A Exportin-T; karyopherin 96.9 0.076 2.6E-06 59.9 22.4 339 152-522 456-869 (980)
102 1upk_A MO25 protein; transfera 96.9 0.12 4.2E-06 49.7 19.7 208 215-429 72-285 (341)
103 4ffb_C Protein STU2; tubulin f 96.7 0.016 5.5E-07 55.2 12.8 188 312-522 14-211 (278)
104 4ffb_C Protein STU2; tubulin f 96.7 0.018 6.1E-07 54.9 13.0 191 222-427 11-212 (278)
105 2f31_A Diaphanous protein homo 96.5 0.036 1.2E-06 51.3 13.0 144 369-515 67-220 (233)
106 3c2g_A SYS-1 protein; beta-cat 96.2 0.92 3.2E-05 43.6 21.6 188 282-480 260-474 (619)
107 3l9t_A Putative uncharacterize 96.0 0.076 2.6E-06 48.5 12.0 180 92-305 38-218 (240)
108 2of3_A ZYG-9; multifunctional 96.0 0.11 3.8E-06 48.7 13.6 134 319-482 98-239 (266)
109 2of3_A ZYG-9; multifunctional 95.7 0.1 3.6E-06 48.9 12.2 172 102-294 54-236 (266)
110 3eg5_B Protein diaphanous homo 95.5 0.32 1.1E-05 48.5 15.7 156 356-513 109-284 (383)
111 2bnx_A Diaphanous protein homo 95.5 0.31 1.1E-05 48.6 15.4 142 369-513 71-222 (386)
112 3gjx_A Exportin-1; transport, 95.2 1.8 6.1E-05 49.1 22.0 148 142-295 482-645 (1073)
113 3oc3_A Helicase MOT1, MOT1; re 95.0 0.24 8.3E-06 50.8 12.6 243 224-519 177-432 (800)
114 1lsh_A Lipovitellin (LV-1N, LV 95.0 0.48 1.6E-05 53.9 16.8 174 214-425 346-541 (1056)
115 1lrv_A LRV, leucine-rich repea 94.6 0.025 8.4E-07 52.7 4.1 44 224-287 101-144 (244)
116 3l9t_A Putative uncharacterize 94.4 0.78 2.7E-05 41.8 13.5 142 225-396 75-218 (240)
117 1upk_A MO25 protein; transfera 94.4 3.4 0.00012 39.7 18.5 236 178-425 78-330 (341)
118 3u0r_A Apoptosis inhibitor 5; 94.2 5 0.00017 40.5 19.9 123 191-336 40-162 (507)
119 3a6p_A Exportin-5; exportin-5, 94.0 3.5 0.00012 47.5 21.3 305 94-427 11-380 (1204)
120 3a6p_A Exportin-5; exportin-5, 93.2 3.9 0.00013 47.2 19.9 292 151-480 26-381 (1204)
121 2fv2_A RCD1 required for cell 93.0 3.8 0.00013 37.7 15.3 137 283-428 74-225 (268)
122 2fv2_A RCD1 required for cell 92.7 3.4 0.00012 38.0 14.7 135 326-478 74-223 (268)
123 3u0r_A Apoptosis inhibitor 5; 92.4 3.3 0.00011 41.8 15.2 129 319-483 39-167 (507)
124 3ebb_A Phospholipase A2-activa 92.1 3 0.0001 39.9 14.4 180 109-300 79-269 (304)
125 3eg5_B Protein diaphanous homo 91.8 9.3 0.00032 37.8 18.1 171 108-282 81-282 (383)
126 2f31_A Diaphanous protein homo 90.5 10 0.00034 34.5 16.7 141 108-251 15-181 (233)
127 3gs3_A Symplekin, LD45768P; he 89.0 14 0.00048 34.2 20.1 195 92-299 13-248 (257)
128 1lrv_A LRV, leucine-rich repea 89.0 0.57 1.9E-05 43.4 6.0 20 225-244 150-169 (244)
129 1vdy_A Hypothetical protein (R 88.8 0.46 1.6E-05 39.6 4.6 77 450-527 49-134 (140)
130 3ebb_A Phospholipase A2-activa 88.4 11 0.00036 36.0 14.6 98 321-428 161-264 (304)
131 1lsh_A Lipovitellin (LV-1N, LV 88.4 2.6 9E-05 47.8 12.1 170 139-340 393-579 (1056)
132 3o2t_A Symplekin; heat repeat, 85.9 20 0.00069 35.2 15.3 129 323-479 40-183 (386)
133 3qml_C Protein SLS1, nucleotid 83.5 13 0.00043 35.2 11.9 133 372-523 44-189 (315)
134 3o2t_A Symplekin; heat repeat, 82.5 39 0.0013 33.2 17.6 192 94-299 25-261 (386)
135 3gs3_A Symplekin, LD45768P; he 80.5 19 0.00065 33.3 12.0 135 323-478 30-172 (257)
136 2bnx_A Diaphanous protein homo 76.6 60 0.0021 31.9 16.8 172 109-284 20-222 (386)
137 1x5b_A Signal transducing adap 75.8 5.6 0.00019 34.1 6.4 69 452-521 54-123 (163)
138 3ldz_A STAM-1, signal transduc 73.8 5.1 0.00017 33.4 5.5 69 452-521 44-112 (140)
139 3ut4_A CTHE_2751, putative unc 72.9 9.1 0.00031 31.4 6.5 95 399-524 32-131 (134)
140 3g2s_A C-terminal fragment of 71.8 8.1 0.00028 32.5 6.3 70 451-521 49-124 (149)
141 1mhq_A ADP-ribosylation factor 71.8 8 0.00027 32.5 6.3 70 451-521 39-114 (148)
142 1juq_A ADP-ribosylation factor 69.6 7.7 0.00026 33.5 5.8 69 452-521 52-126 (171)
143 3g2s_A C-terminal fragment of 68.0 52 0.0018 27.4 11.6 93 356-452 48-147 (149)
144 3qml_C Protein SLS1, nucleotid 67.9 36 0.0012 32.1 10.3 99 366-479 80-189 (315)
145 2xpp_A IWS1, ECU08_0440; trans 66.3 26 0.00087 29.2 8.1 72 444-521 55-134 (145)
146 1x5b_A Signal transducing adap 60.6 46 0.0016 28.2 9.0 72 399-479 53-125 (163)
147 3ldz_A STAM-1, signal transduc 59.9 21 0.00071 29.5 6.5 71 399-478 43-113 (140)
148 2npp_B PP2A, B subunit, serine 55.8 1.7E+02 0.0058 29.3 13.5 237 132-392 157-406 (449)
149 4atg_A TAF6; transcription, TF 53.6 51 0.0017 29.0 8.2 142 90-249 10-161 (196)
150 1mhq_A ADP-ribosylation factor 53.1 28 0.00096 29.1 6.2 71 399-478 39-115 (148)
151 1juq_A ADP-ribosylation factor 51.0 1.2E+02 0.004 25.9 11.5 71 356-426 50-127 (171)
152 1elk_A Target of MYB1; superhe 50.9 31 0.001 29.1 6.2 69 452-521 55-128 (157)
153 1vsy_5 Proteasome activator BL 50.6 1.4E+02 0.0048 33.4 13.2 187 263-479 131-365 (997)
154 3zyq_A Hepatocyte growth facto 49.6 18 0.00063 32.7 4.9 69 452-521 47-116 (226)
155 3fga_B Serine/threonine-protei 49.0 1.9E+02 0.0064 28.5 12.2 229 135-387 127-368 (403)
156 1dvp_A HRS, hepatocyte growth 48.9 24 0.0008 31.7 5.5 69 452-521 44-113 (220)
157 2p8q_B Snurportin-1; heat repe 48.2 12 0.00041 23.5 2.3 33 25-58 6-39 (40)
158 1inz_A EPS15-interacting porte 45.2 60 0.0021 27.0 7.0 74 451-524 60-141 (148)
159 3nfq_A Transcription factor IW 44.2 88 0.003 26.7 7.9 73 443-521 69-149 (170)
160 1wjt_A Transcription elongatio 42.1 19 0.00066 28.0 3.2 37 486-522 46-83 (103)
161 1vsy_5 Proteasome activator BL 41.8 2.2E+02 0.0075 31.8 12.9 187 179-385 134-365 (997)
162 3jxy_A Alkylpurine DNA glycosy 40.3 2E+02 0.0069 25.6 10.6 139 144-307 68-208 (232)
163 2b6c_A Hypothetical protein EF 39.2 2E+02 0.0069 25.4 10.7 145 142-311 60-205 (220)
164 3zyq_A Hepatocyte growth facto 38.5 1.5E+02 0.0052 26.4 9.2 71 356-426 45-117 (226)
165 2b6c_A Hypothetical protein EF 32.6 2.6E+02 0.0088 24.6 12.6 131 268-428 58-189 (220)
166 3bzy_A ESCU; auto cleavage pro 30.7 45 0.0016 22.5 3.1 31 14-45 5-36 (54)
167 3gae_A Protein DOA1; UFD3, CDC 30.6 74 0.0025 29.1 5.8 132 324-480 70-218 (253)
168 1dvp_A HRS, hepatocyte growth 29.1 3E+02 0.01 24.2 10.2 71 356-426 42-114 (220)
169 3pst_A Protein DOA1; protein d 29.1 2.5E+02 0.0087 27.7 9.6 131 324-479 242-389 (425)
170 1eyh_A Epsin; superhelix of he 28.2 45 0.0015 27.7 3.5 71 451-521 42-120 (144)
171 2g7o_A Protein TRAM; four heli 27.5 51 0.0017 23.5 3.1 20 508-527 50-69 (70)
172 3rru_A TOM1L1 protein; structu 27.1 84 0.0029 26.2 5.0 69 452-521 55-128 (152)
173 3onk_A Epsin-3, ENT3; helix, p 26.6 40 0.0014 28.2 2.9 71 451-521 48-127 (150)
174 3l3f_X Protein DOA1, DOA1/UFD3 25.5 51 0.0017 32.0 3.8 99 320-427 211-326 (362)
175 3pst_A Protein DOA1; protein d 25.0 1E+02 0.0034 30.6 5.9 100 319-427 273-389 (425)
176 3gae_A Protein DOA1; UFD3, CDC 24.9 76 0.0026 29.1 4.8 98 191-296 102-219 (253)
177 1elk_A Target of MYB1; superhe 23.9 2.2E+02 0.0075 23.7 7.1 71 399-478 54-129 (157)
178 3l3f_X Protein DOA1, DOA1/UFD3 23.5 2.9E+02 0.01 26.6 8.8 102 365-479 208-326 (362)
179 3on0_A Protein TRAM; DNA bindi 22.8 56 0.0019 26.1 2.8 23 508-530 105-127 (127)
180 3s4w_B Protein FACD2, fanconi 22.7 9.2E+02 0.031 27.7 16.2 129 323-479 325-467 (1323)
181 4fu3_A Regulation of nuclear P 22.0 55 0.0019 26.5 2.9 63 356-428 7-69 (135)
182 1xgw_A Epsin 4; ENTH, enthopro 21.4 78 0.0027 27.2 3.8 71 452-522 72-151 (176)
183 3sjd_D Golgi to ER traffic pro 21.2 75 0.0025 20.2 2.6 17 39-55 16-32 (46)
184 4atg_A TAF6; transcription, TF 20.5 2.8E+02 0.0096 24.1 7.3 110 308-425 41-160 (196)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.4e-74 Score=618.03 Aligned_cols=475 Identities=28% Similarity=0.493 Sum_probs=385.8
Q ss_pred HHh-hhcCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHHh
Q 009647 25 VIW-FLVGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAY 102 (530)
Q Consensus 25 ~~~-~~~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 102 (530)
.|| |+.|+++.|||| |++++|||+||||+|.|||+. ....++..++.. +... ........++++++ +
T Consensus 16 ~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~--~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~lv~---~ 84 (529)
T 3tpo_A 16 RFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNV--SSFPDDATSPLQ-----ENRN-NQGTVNWSVEDIVK---G 84 (529)
T ss_dssp ----------------------------CCSCSCCCCC--C---------------------CGGGSSCCHHHHHH---H
T ss_pred HhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCC--CCCcccccChhh-----hccc-hhhhHHHHHHHHHH---H
Confidence 799 899987766666 799999999999999888853 212222111110 1000 01112223455555 4
Q ss_pred cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCc
Q 009647 103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PAL 180 (530)
Q Consensus 103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v 180 (530)
++|+|++.++.|+..+|++||.+.+||++.++++|+||.||++|..++++.+|++|+|+|+|+++++++++..++ |+|
T Consensus 85 l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gai 164 (529)
T 3tpo_A 85 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 164 (529)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 569999999999999999999999999999999999999999998777788999999999999999999998888 899
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCC-----hhHHHHHHHHHHHhhcCCCCC
Q 009647 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-----GSTVRTAAWALSNLIKGPDPK 255 (530)
Q Consensus 181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nL~~~~~~~ 255 (530)
|.|+.+|.+ ++++++++|+|+|+||+.+++++|+.+++.|++++|+.+|..++ ..+.++++|+|+++|+++.+.
T Consensus 165 p~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~ 243 (529)
T 3tpo_A 165 PAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 243 (529)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch
Confidence 999999988 78999999999999999999999999999999999999998653 467899999999999987555
Q ss_pred chhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhh
Q 009647 256 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 335 (530)
Q Consensus 256 ~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl 335 (530)
.... ...+++|.|++++.+++++++.++||+|+|++.++++..+.+++.|+++.|+.+| .+++..++.+++++|+|+
T Consensus 244 ~~~~--~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 244 PPLD--AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNI 320 (529)
T ss_dssp CCHH--HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHH
T ss_pred hhHH--HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHHHHHHHHH
Confidence 4333 3569999999999999999999999999999998888899999999999999999 588999999999999999
Q ss_pred hcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHH
Q 009647 336 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIK 415 (530)
Q Consensus 336 ~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~ 415 (530)
+++++.+++.+++. |+++.|+.+|.++++.++++|||+|+||+++++.+++.+++.|++|.|+.+|.+++++++
T Consensus 321 ~~~~~~~~~~i~~~------g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 321 VTGTDEQTQKVIDA------GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp TTSCHHHHHHHHHT------TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HccchHHHHHHhhc------ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 99999998888864 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC----CcchhHHH
Q 009647 416 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN----HEGTKLVE 491 (530)
Q Consensus 416 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~----~~~~~~i~ 491 (530)
++|+|+|+|++.++ + .+++.+|++.|+|++|+++|.++|++++..+|++|.+|++.++. +.++.+|+
T Consensus 395 ~~A~~aL~nl~~~~-----~----~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie 465 (529)
T 3tpo_A 395 KAAAWAITNYTSGG-----T----VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 465 (529)
T ss_dssp HHHHHHHHHHHHHS-----C----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----C----HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHH
Confidence 99999999998753 2 47889999999999999999999999999999999999976532 24567899
Q ss_pred HhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCCC
Q 009647 492 REDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLD 529 (530)
Q Consensus 492 ~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~~ 529 (530)
++||+++|+.||+|+|++||++|..||++||++||+++
T Consensus 466 e~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~ 503 (529)
T 3tpo_A 466 ECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEED 503 (529)
T ss_dssp HTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-------
T ss_pred HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence 99999999999999999999999999999999877665
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.2e-67 Score=558.18 Aligned_cols=459 Identities=29% Similarity=0.497 Sum_probs=380.5
Q ss_pred HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009647 40 QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELR 119 (530)
Q Consensus 40 ~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~s~d~~~~~~a~~~lr 119 (530)
.-.+++|+++++++....+.. ...+++. ...+..+ ......++++++++.+ +|+|++.|++|+..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~-~~~~~~~~i~~~v~~l---~s~d~~~q~~a~~~~r 82 (510)
T 3ul1_B 16 SGMLETAAALFERNHMDSPDL--GTDDDDL-------AMADIGS-NQGTVNWSVEDIVKGI---NSNNLESQLQATQAAR 82 (510)
T ss_dssp -----------------------------------------------CCSSCCHHHHHHHH---TSSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhhccCCccc--cCCcccc-------chhhhcc-ccchhhhhHHHHHHHh---cCCCHHHHHHHHHHHH
Confidence 456677888877777655531 1111110 0011111 1222445678877766 5999999999999999
Q ss_pred HHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHH
Q 009647 120 RLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAE 197 (530)
Q Consensus 120 ~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~ 197 (530)
++||.+.+||++.++++|+||+||++|+..+.+.+|++|+|+|+|||+++++++..++ |+||.|+.+|.+ +++++++
T Consensus 83 klls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s-~~~~v~e 161 (510)
T 3ul1_B 83 KLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISE 161 (510)
T ss_dssp HHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHH
T ss_pred HHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHH
Confidence 9999999999999999999999999999877788999999999999999999999998 799999999988 8899999
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCC-----hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHH
Q 009647 198 QCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-----GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272 (530)
Q Consensus 198 ~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~ 272 (530)
+|+|+|+||+.+++.+|+.+++.|++++|+.++.+++ ..++++++|+++|+++++.+.... ....+++|.|++
T Consensus 162 ~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--~~~~~~lp~L~~ 239 (510)
T 3ul1_B 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--DAVEQILPTLVR 239 (510)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH--HHHHhHHHHHHH
Confidence 9999999999999999999999999999999998654 467899999999999987555433 335699999999
Q ss_pred HhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCC
Q 009647 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG 352 (530)
Q Consensus 273 lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~ 352 (530)
++.+++++++..++|+|++|+.++++..+.+.+.|+++.|+.+| .+++..++.+++++|+|++++++.+++.+++.
T Consensus 240 LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~--- 315 (510)
T 3ul1_B 240 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVIDA--- 315 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT---
T ss_pred HHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhc---
Confidence 99999999999999999999998888889999999999999999 58889999999999999999999999888864
Q ss_pred cchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC
Q 009647 353 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG 432 (530)
Q Consensus 353 ~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~ 432 (530)
|+++.|+.+|.++++.++++|+|+|+||+++++.+++.+++.|++|.|+.+|.+++++++++|+|+|+|++.+.
T Consensus 316 ---g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~--- 389 (510)
T 3ul1_B 316 ---GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG--- 389 (510)
T ss_dssp ---TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---
T ss_pred ---cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC---
Confidence 69999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC----CcchhHHHHhchHHHHHHHhcCCcH
Q 009647 433 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN----HEGTKLVEREDGIDAMERFQFHENE 508 (530)
Q Consensus 433 ~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~----~~~~~~i~~~ggl~~L~~L~~~~~~ 508 (530)
+ .+++.+|++.|++++|+++|.++|++++..+|++|.+|++.++. +.++.+|+++||+++|+.||+|+|+
T Consensus 390 --~----~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~ 463 (510)
T 3ul1_B 390 --T----VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE 463 (510)
T ss_dssp --C----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred --C----HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCH
Confidence 2 47889999999999999999999999999999999999986532 3456789999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCC
Q 009647 509 DLRNMANGLVDKYFGEDYGLDE 530 (530)
Q Consensus 509 ~i~~~A~~il~~~f~~~~~~~~ 530 (530)
+||++|..||++||++||++|+
T Consensus 464 ~i~~~A~~iie~yf~~~~~~~~ 485 (510)
T 3ul1_B 464 SVYKASLNLIEKYFSVEEEEDQ 485 (510)
T ss_dssp HHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHCCCcccccc
Confidence 9999999999999998877653
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.1e-61 Score=518.83 Aligned_cols=473 Identities=32% Similarity=0.510 Sum_probs=377.7
Q ss_pred HHHhhhcCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHHh
Q 009647 24 SVIWFLVGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAY 102 (530)
Q Consensus 24 ~~~~~~~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 102 (530)
..||.++|.++.|||| ++.++|||+|||+++.|||+... ..++ ..+. . .+ + ... ...+.+..++..
T Consensus 16 ~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~--~~~~-~~~~-~----~~-~-~~~---~~~~~l~~lv~~ 82 (528)
T 4b8j_A 16 NRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGL--QAQA-PVPA-S----AA-T-GVD---KKLESLPAMIGG 82 (528)
T ss_dssp -----------CCCCC-----------------CCCC-----------------------------------CHHHHHHH
T ss_pred HhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCC--Cccc-cccc-c----cc-c-chh---hhHHHHHHHHHH
Confidence 3899888887655555 89999999999999999997421 1111 0000 0 00 0 011 122334444555
Q ss_pred cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCc
Q 009647 103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PAL 180 (530)
Q Consensus 103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v 180 (530)
+.++|++.+..|+..|+++++...++++..+++.|++|.|+++|.+++.+.++.+|+|+|+++++++++.+..++ |++
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 569999999999999999999887788999999999999999999876678889999999999999888888887 799
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhc-CCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM-LPNKGSTVRTAAWALSNLIKGPDPKPATE 259 (530)
Q Consensus 181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 259 (530)
|.|+.+|.+ +++.++++|+|+|+||+.+++.+++.+...|++++|+.++ .+++..++++++|+|++||.+. +.....
T Consensus 163 ~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~ 240 (528)
T 4b8j_A 163 PIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFE 240 (528)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHH
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHH
Confidence 999999998 7899999999999999999999999999999999999999 5678999999999999999875 333332
Q ss_pred HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647 260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD 339 (530)
Q Consensus 260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 339 (530)
...+++|.|+.++.+++++++..++|+|++|+.+.+...+.+++.|+++.|+.+| .++++.++.+|+++|+|++.++
T Consensus 241 --~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~ 317 (528)
T 4b8j_A 241 --QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALRTVGNIVTGD 317 (528)
T ss_dssp --HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSC
T ss_pred --HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHHHHHHHHcCC
Confidence 2579999999999999999999999999999998888888899999999999999 5778899999999999999998
Q ss_pred ccccchhcccCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647 340 SSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 418 (530)
Q Consensus 340 ~~~~~~~i~~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA 418 (530)
+...+.+++ .|++|.|+.+|.++ ++.++++|+|+|+||+.+++.+++.+++.|++|.|+.+|.+++++++++|
T Consensus 318 ~~~~~~~~~------~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 318 DAQTQCIID------HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHHHHHHHT------TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHH------hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 888888885 46999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccC---------CCCcchhH
Q 009647 419 AYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM---------PNHEGTKL 489 (530)
Q Consensus 419 ~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~---------~~~~~~~~ 489 (530)
+|+|+|++... + .+++.++++.|++++|+.+|..+|++++..++++|.+|+... ..+.++..
T Consensus 392 ~~aL~nl~~~~-----~----~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~ 462 (528)
T 4b8j_A 392 AWAISNATSGG-----S----HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQM 462 (528)
T ss_dssp HHHHHHHHHHS-----C----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHH
T ss_pred HHHHHHHHcCC-----C----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHH
Confidence 99999998752 2 367889999999999999999999999999999999999754 23356889
Q ss_pred HHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCCC
Q 009647 490 VEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLD 529 (530)
Q Consensus 490 i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~~ 529 (530)
++++||++.|+.|++|+|++++++|..|+++||+.+++++
T Consensus 463 i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~ 502 (528)
T 4b8j_A 463 IDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDT 502 (528)
T ss_dssp HHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence 9999999999999999999999999999999999877653
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.6e-60 Score=508.32 Aligned_cols=497 Identities=29% Similarity=0.465 Sum_probs=397.1
Q ss_pred chhhhHHHHHHH--HHH-HHh-hh-cCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHH
Q 009647 10 NNGKRKMKIIMK--MCS-VIW-FL-VGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQS 83 (530)
Q Consensus 10 ~~~~~~~~~~~~--~~~-~~~-~~-~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (530)
++|--+|+...+ .|. .|| ++ +|+++.|||| +.+++|||+|||++|.|||+... ....++.+++......+. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~-~ 79 (530)
T 1wa5_B 2 DNGTDSSTSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIP-PTDGADSDEEDESSVSAD-Q 79 (530)
T ss_dssp ----------CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC-----------------------
T ss_pred CCccccCCCCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCc-cccccccCCchhhhhhhh-h
Confidence 678778874432 122 688 47 7887766666 79999999999999998886321 000011000000000000 1
Q ss_pred HHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHH
Q 009647 84 ILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLT 163 (530)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~ 163 (530)
.+.......++.+++. ++++++..+..|+..|+++++...++++..+++.|++|.|+++|.+++++.++.+|+|+|+
T Consensus 80 ~~~~~~~~~i~~lv~~---L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~ 156 (530)
T 1wa5_B 80 QFYSQLQQELPQMTQQ---LNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALT 156 (530)
T ss_dssp -------CCHHHHHHH---HSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 1111122234455544 4689999999999999999988777888899999999999999998755788899999999
Q ss_pred HHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHH
Q 009647 164 NIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTA 241 (530)
Q Consensus 164 nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a 241 (530)
++++++++.+..++ |++|.|+.+|.+ +++.++++|+|+|+||+.+++..++.++..|++++|+.++.+++..+++.+
T Consensus 157 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 235 (530)
T 1wa5_B 157 NIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA 235 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHH
Confidence 99999888888776 899999999997 789999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC
Q 009647 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS 321 (530)
Q Consensus 242 ~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~ 321 (530)
+|+|++|+.+..+.... ....+++|.|+.++.+++++++..++|+|.+|+.+.++..+.+++.|+++.|+.+| .+.+
T Consensus 236 ~~~L~~L~~~~~~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~ 312 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPDW--SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHES 312 (530)
T ss_dssp HHHHHHHHCCSSSCCCH--HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSC
T ss_pred HHHHHHHhCCCCCCCcH--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCC
Confidence 99999999875344332 33579999999999999999999999999999998788888899999999999999 4788
Q ss_pred ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHH
Q 009647 322 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALA 401 (530)
Q Consensus 322 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~ 401 (530)
+.++.+|+++|+|++.+++...+.+++ .|+++.|+.+|.++++.+++.|+|+|+|++.+++++++.+++.|++|
T Consensus 313 ~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~ 386 (530)
T 1wa5_B 313 TLVQTPALRAVGNIVTGNDLQTQVVIN------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 386 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHH------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 899999999999999998888887775 47999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647 402 LLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 402 ~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~ 481 (530)
.|+.+|.++++.++++|+|+|+|++... .+. .+++.++++.|++++|+.+|..++++++..++++|.+++..+
T Consensus 387 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~-----~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 387 PLVKLLEVAEYKTKKEACWAISNASSGG-----LQR--PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHT-----TTC--THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcC-----CCc--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998742 110 156788999999999999999999999999999999999754
Q ss_pred CC---------CcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCC
Q 009647 482 PN---------HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGL 528 (530)
Q Consensus 482 ~~---------~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~ 528 (530)
+. +.++..++++||+++|+.|++|++++|+++|..+|++||++++++
T Consensus 460 ~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 460 EADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred hhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 32 346788999999999999999999999999999999999987764
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.8e-49 Score=413.39 Aligned_cols=416 Identities=30% Similarity=0.502 Sum_probs=368.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHc-CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKA-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~-g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
++.+.+.+ +++|+..+..|+..|+++++...++++..+++. |++|.|+++|.+++++.++.+|+|+|++++.++++
T Consensus 22 l~~l~~~l---~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~ 98 (450)
T 2jdq_A 22 TSDMIEMI---FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL 98 (450)
T ss_dssp CHHHHHHH---HSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 34455555 489999999999999999887667888888888 99999999999875578889999999999999888
Q ss_pred hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHh
Q 009647 172 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNL 248 (530)
Q Consensus 172 ~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL 248 (530)
....++ |++|.|+.+|.+ +++.+++.|+|+|+|++.+++..++.+++.|++++|+.++.+ ++..+++.++|+|++|
T Consensus 99 ~~~~~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 877776 799999999998 789999999999999999988999999999999999999995 6899999999999999
Q ss_pred hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647 249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328 (530)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a 328 (530)
+.+..+...... ..+++|.|+.++.++|++++..++|+|.+++...++....+.+.|+++.|+.+| .++++.++..|
T Consensus 178 ~~~~~~~~~~~~--~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a 254 (450)
T 2jdq_A 178 CRGKSPPPEFAK--VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPA 254 (450)
T ss_dssp HCCSSSCCCGGG--TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHH
T ss_pred hCCCCCCCCHHH--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHH
Confidence 987534433333 379999999999999999999999999999987777888888999999999999 47888999999
Q ss_pred HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc
Q 009647 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 408 (530)
Q Consensus 329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~ 408 (530)
+++|++++.+.+...+.+++ .|+++.|+.+|.++++.+++.|+|+|+|++.+++...+.+++.|++|.|+.+|.
T Consensus 255 ~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~ 328 (450)
T 2jdq_A 255 LRAVGNIVTGDDIQTQVILN------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 328 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHT------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHhhCChHHHHHHHH------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 99999999998877777775 469999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC-----
Q 009647 409 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN----- 483 (530)
Q Consensus 409 ~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~----- 483 (530)
+++++++++|+|+|+|++.+. + .++++.+++.|+++.|+++|..++++++..++++|.+++..++.
T Consensus 329 ~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 399 (450)
T 2jdq_A 329 TAEFRTRKEAAWAITNATSGG-----S----AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN 399 (450)
T ss_dssp HSCHHHHHHHHHHHHHHHHHC-----C----HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHcCC-----C----HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc
Confidence 999999999999999998642 2 36778889999999999999999999999999999999875431
Q ss_pred ----CcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCCCC
Q 009647 484 ----HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 530 (530)
Q Consensus 484 ----~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~~~ 530 (530)
+++...+.++||+++|+.|++|+++++++.|..+|++||++++++++
T Consensus 400 ~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 450 (450)
T 2jdq_A 400 GTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSS 450 (450)
T ss_dssp CSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccccCC
Confidence 34678899999999999999999999999999999999998887653
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.2e-45 Score=381.56 Aligned_cols=366 Identities=21% Similarity=0.225 Sum_probs=296.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcH-HHHHHcCCHHHHHHHhcCCCC-----------hHHHHHHH
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPI-ETALKAGAIPVLVQCLAFGSP-----------DEQLLEAA 159 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~-~~ii~~g~v~~Lv~lL~~~~~-----------~~~~~eA~ 159 (530)
.++.+.+++.++.+.|+.. .+|++++...++++ ..++++|++|.||++|...+. ++++++|+
T Consensus 30 ~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~ 103 (458)
T 3nmz_A 30 KVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103 (458)
T ss_dssp ---------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence 3556666666667888763 77888888888888 788999999999999996433 68999999
Q ss_pred HHHHHHhcCChhhHHhhc--CCc----------HHHHHhhcCCC-CHH-----HHH-------HHHHHHHhhcCCCchhH
Q 009647 160 WCLTNIAAGKQEETKALL--PAL----------PLLIAHLGEKS-SSP-----VAE-------QCAWALGNVAGEGEEFR 214 (530)
Q Consensus 160 ~~L~nia~~~~~~~~~i~--~~v----------~~L~~lL~~~~-~~~-----v~~-------~a~~~L~nla~d~~~~r 214 (530)
|+|+||++++++.+.... +++ +.+++++.++. +.+ +++ +|+|+|+|++.+ +++|
T Consensus 104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R 182 (458)
T 3nmz_A 104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR 182 (458)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence 999999999998887755 455 67778887631 122 566 999999999875 8999
Q ss_pred HHHHhcCChhhhHhhcCC-----------CChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchHHHHHHHhccCCHHHH
Q 009647 215 NVLLSQGALPPLARMMLP-----------NKGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLLDAILRHLKRADEELT 282 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~-~~~~l~~L~~lL~~~d~~v~ 282 (530)
+.+++.|++++|+.+|.. .++.++++|+|+|.|||.+++ ..+..+. ..|++|.|+.+|.+++++++
T Consensus 183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~--~~k~~i~~~~GaIp~LV~LL~s~~~~v~ 260 (458)
T 3nmz_A 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKATLCSMKGCMRALVAQLKSESEDLQ 260 (458)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHCHHHHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCc--ccHHHHHHcCCcHHHHHHHHhCCCHHHH
Confidence 999999999999999942 246789999999999998752 2343442 45779999999999999999
Q ss_pred HHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC-ccccchhcccCCCcchhhHHH
Q 009647 283 TEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD-SSTISDVLVPGHGITDQVIAV 360 (530)
Q Consensus 283 ~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~-~~~~~~~i~~g~~~~~~~l~~ 360 (530)
..++|+|.||+.+ ++++...+.+.|+++.|+++|..+.+..++.+|+++|+||+.+. +.+.+.+.. .|++|.
T Consensus 261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~------~Gal~~ 334 (458)
T 3nmz_A 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV------DGALAF 334 (458)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHS------TTHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHh------cCcHHH
Confidence 9999999999985 56778889999999999998755677889999999999999844 444443323 479999
Q ss_pred HHHHhccCcH----hHHHHHHHHHHHHhc---CCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCC
Q 009647 361 LVKCLKSEHR----VLKKEAAWVLSNIAA---GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGE 433 (530)
Q Consensus 361 L~~lL~~~~~----~i~~~A~~~Lsnl~~---~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~ 433 (530)
|+.+|.+.+. .+++.|+|+|+||+. +++++.+.+++.|++|+|+.+|.+++.+++++|+|+|+|++.+.
T Consensus 335 Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~---- 410 (458)
T 3nmz_A 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN---- 410 (458)
T ss_dssp HHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC----
T ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC----
Confidence 9999987754 499999999999996 78899999999999999999999999999999999999998632
Q ss_pred CCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647 434 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482 (530)
Q Consensus 434 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~ 482 (530)
.++...+++.|++++|+++|.+++++++..++++|.+|+..-+
T Consensus 411 ------~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 411 ------PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp ------HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred ------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 3778999999999999999999999999999999999997543
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.3e-42 Score=363.58 Aligned_cols=362 Identities=14% Similarity=0.113 Sum_probs=306.0
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647 138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215 (530)
Q Consensus 138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 215 (530)
.+|.|+.+|.+++ +..|.+|+++|.+++.+++..+..+. |++|.|+.+|.+ +++++++.|+|+|.||+.++++.|.
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999876 56889999999999988776666666 899999999997 7899999999999999998899999
Q ss_pred HHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--------c--------CC
Q 009647 216 VLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--------R--------AD 278 (530)
Q Consensus 216 ~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~--------~--------~d 278 (530)
.+++.|++|+|+++|. ++++++++.++|+|+||+.++ . .+..+.. |++|.|++++. + .+
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~--~-~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--E-LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS--S-THHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH--H-hHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 9999999999999999 889999999999999999763 2 3444556 99999999993 2 35
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHhc-CchHHHHHHHhc-----CCCccchhhhHHHHhhhhcC--------------
Q 009647 279 EELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAG-------------- 338 (530)
Q Consensus 279 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~-g~l~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~-------------- 338 (530)
++++.+++|+|+||+.+ ++..+.+.+. |+++.|+.+|.. ..+..++..++.+|.|++..
T Consensus 157 ~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 67888999999999986 7788889887 999999999952 14567788899889888631
Q ss_pred ------------------------------------CccccchhcccCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHH
Q 009647 339 ------------------------------------DSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLS 381 (530)
Q Consensus 339 ------------------------------------~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Ls 381 (530)
.+..++.++ +.++++.|+.+|.+. ++.+++.|+|+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~l~~L~~lL~~~~~~~~~e~a~~aL~ 309 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY------HSDAIRTYLNLMGKSKKDATLEACAGALQ 309 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGG------SHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh------CcchHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 112233344 457999999999765 5799999999999
Q ss_pred HHhcCCHH---HH-HHHH-hCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHH
Q 009647 382 NIAAGSVE---HK-QLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI 456 (530)
Q Consensus 382 nl~~~~~~---~~-~~li-~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~ 456 (530)
||++++.. .+ +.++ +.|++|.|+++|.+++++++++|+|+|+|++.+ .+...++..|++++|+
T Consensus 310 nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~------------~~~~~~i~~~~i~~Lv 377 (457)
T 1xm9_A 310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH------------PLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS------------GGGHHHHHHHTHHHHH
T ss_pred HhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC------------HHHHHHHHHhhhHHHH
Confidence 99987543 23 4455 689999999999999999999999999999874 2346677789999999
Q ss_pred hhhccCCH------HHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC-cHHHHHHHHHHHHhhcCCCC
Q 009647 457 DLVRSADI------EAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-NEDLRNMANGLVDKYFGEDY 526 (530)
Q Consensus 457 ~lL~~~d~------~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~-~~~i~~~A~~il~~~f~~~~ 526 (530)
++|..+++ +++..++.+|.+|+... ..+...+.++||++.|.+|+.|+ ++++|+.|..+|+.||.+.+
T Consensus 378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~--~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQ--PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC--THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HhccCCCCCCCCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99998753 68889999999998654 34678899999999999999999 99999999999999998765
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-43 Score=383.63 Aligned_cols=366 Identities=17% Similarity=0.108 Sum_probs=310.4
Q ss_pred HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 009647 92 AVEELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK 169 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~--d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~ 169 (530)
.++.+++++. ++ |.+.+..|+..|..+ +...+.....+.+.|++|.|+++|++++ +.+++.|+|+|.|++.++
T Consensus 378 Lv~~l~~lL~---~~~~d~~v~~~AveaLayL-S~~~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 378 LAEACRRFLI---KPGKDKDIRRWAADGLAYL-TLDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHHHHHHH---CSSCCSSHHHHHHHHHHHH-TTSHHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhc---CCCCCHHHHHHHHHHHHHH-hCCcHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCc
Confidence 3455666665 55 888999999999998 5444333333445899999999999866 568899999999999875
Q ss_pred hh-----------------------------h---HHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647 170 QE-----------------------------E---TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215 (530)
Q Consensus 170 ~~-----------------------------~---~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 215 (530)
++ . ++.++ |++|.|+.+|.+ +++.++++|+|+|+|||++ +++|.
T Consensus 453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d-~~~r~ 530 (810)
T 3now_A 453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCGL-KELRG 530 (810)
T ss_dssp CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHH
Confidence 21 1 24555 899999999988 7899999999999999985 67999
Q ss_pred HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH-HHHHHHHHHHHHhhc
Q 009647 216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSA 294 (530)
Q Consensus 216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~ 294 (530)
.++++|++|+|+.+|.+++...+++|+|+|+||+.+.+|...+......+++|+|+.+|.+++. ....+++|+|.||+.
T Consensus 531 ~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 531 KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610 (810)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999865543322111124799999999986533 456799999999999
Q ss_pred CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647 295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 374 (530)
Q Consensus 295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~ 374 (530)
++++..+.+++.|+++.|+.+|. ++++.++.+|+++|+||+.+++.+.+.+. ..|.++.|+.++.+.+..+++
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~------~~g~l~~Lv~LL~s~d~~vq~ 683 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFEG------NNDRVKFLALLCEDEDEETAT 683 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTSHHHHHHHHS------SSSHHHHHHHGGGCSSHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCChHHHHHHHh------ccCcHHHHHHHhcCCCHHHHH
Confidence 88888889999999999999994 88899999999999999998876665552 247999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh-CCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChH
Q 009647 375 EAAWVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 453 (530)
Q Consensus 375 ~A~~~Lsnl~~~~~~~~~~li~-~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~ 453 (530)
+|+|+|+||+.+++.+++.+++ .|++|+|+++|.+++++++++|+|+|+|++.++ .++..++++.|+++
T Consensus 684 ~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s----------~e~~~~l~e~G~i~ 753 (810)
T 3now_A 684 ACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG----------EEIAKKLFETDIME 753 (810)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC----------HHHHHHHHTSTHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC----------HHHHHHHHHCCCHH
Confidence 9999999999988899999999 899999999999999999999999999998742 37789999999999
Q ss_pred HHHhhhccC---CHHHHHHHHHHHHHHHccC
Q 009647 454 GFIDLVRSA---DIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 454 ~L~~lL~~~---d~~i~~~~L~~L~~il~~~ 481 (530)
+|+++|+.. +++++..++++|.+++..+
T Consensus 754 ~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 754 LLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 999999765 6899999999999999754
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.6e-39 Score=340.11 Aligned_cols=361 Identities=17% Similarity=0.179 Sum_probs=300.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 172 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~ 172 (530)
++.++.++. ++|++.+..|+..|+++. ....+....+++.|+||.|+++|.+++ +.+|++|+|+|+|++.+++++
T Consensus 4 l~~lv~~L~---s~~~~~q~~A~~~L~~l~-~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 4 IPKAVQYLS---SQDEKYQAIGAYYIQHTC-FQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp HHHHHHHHH---SSCTHHHHHHHHHHHHHT-SSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHC---CCCHHHHHHHHHHHHHHH-cCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHH
Confidence 456666665 889999999999999984 333333448889999999999999765 678899999999999988888
Q ss_pred HHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC--------C--------CC
Q 009647 173 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--------P--------NK 234 (530)
Q Consensus 173 ~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~--------~--------~~ 234 (530)
+..++ |++|.|+++|..+++++++++|+|+|+||+.+ ++.|..+++ |++|+|+.+|. + .+
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 88887 89999999998447899999999999999997 789999999 99999999993 2 25
Q ss_pred hhHHHHHHHHHHHhhcCCCCCchhhHHHhh-chHHHHHHHhcc------CCHHHHHHHHHHHHHhhcC------------
Q 009647 235 GSTVRTAAWALSNLIKGPDPKPATELIKVD-GLLDAILRHLKR------ADEELTTEVAWVVVYLSAL------------ 295 (530)
Q Consensus 235 ~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~-~~l~~L~~lL~~------~d~~v~~~a~~~L~~L~~~------------ 295 (530)
..++++|+|+|+|||.+ + ..+..+... |++|.|+.+|.+ .+..++.+++++|.+|+..
T Consensus 157 ~~v~~~a~~aL~nLs~~--~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSA--D-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp HHHHHHHHHHHHHHTTS--H-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHHccC--H-HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 67888999999999975 3 345666565 999999999986 4667899999999998731
Q ss_pred --------------------------------------CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647 296 --------------------------------------SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 296 --------------------------------------~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 337 (530)
.+...+.+++.|+++.|+.+|..+.++.++.+|+++|+|++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 112334566778899999999767778999999999999999
Q ss_pred CCcccc----chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCCh-
Q 009647 338 GDSSTI----SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF- 412 (530)
Q Consensus 338 ~~~~~~----~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~- 412 (530)
++..+. +.++. +.|++|.|+.+|.+++..++++|+|+|+|++.+. +.+.++..|++|+|+++|.++++
T Consensus 314 ~~~~~~~~~~~~~v~-----~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~ 386 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGL-----KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGN 386 (457)
T ss_dssp CSSSHHHHHHHHHHT-----TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSC
T ss_pred CcCcchHHHHHHHHH-----HcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCC
Confidence 876532 33442 2479999999999999999999999999998853 45666777899999999987653
Q ss_pred -----hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHcc
Q 009647 413 -----DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRG 480 (530)
Q Consensus 413 -----~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~~ 480 (530)
++...|+++|.|++.+. .++...+.+.|++++|++++.++ ++++.+.|.++|.+++..
T Consensus 387 ~~~~~~v~~~~l~~l~ni~~~~----------~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 387 TSNSEDILSSACYTVRNLMASQ----------PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp STTHHHHHHHHHHHHHHHHTTC----------THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred CCCcHHHHHHHHHHHHHHHhcC----------HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 68889999999998642 26788999999999999999999 999999999999998743
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=9.3e-39 Score=339.21 Aligned_cols=365 Identities=21% Similarity=0.315 Sum_probs=320.0
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647 138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214 (530)
Q Consensus 138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~-~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 214 (530)
.++.+|..|.+++ ++.|++|+..+..+.+.. ....+.++ |+||.|+++|.++++++++..|+|+|+|||.++++.+
T Consensus 58 ~i~~~v~~l~s~d-~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 58 SVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 5788999998876 678899999999887543 23456676 8999999999876779999999999999999899999
Q ss_pred HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH-----HHHHHHHHHH
Q 009647 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-----ELTTEVAWVV 289 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-----~v~~~a~~~L 289 (530)
..+++.|+||+|+.+|.+++..+++.|+|+|+||+.+. ...++.+...|+++.|+.++..++. .++..++|+|
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999653 3456677788999999999987653 4688999999
Q ss_pred HHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc
Q 009647 290 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH 369 (530)
Q Consensus 290 ~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~ 369 (530)
++++.+...........|+++.|+.+| .+++++++..|+++|++++.+++...+.+.+ .|+++.|+.+|.+.+
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~ 287 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVK------KGVVPQLVKLLGATE 287 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT------TTCHHHHHHHHTCSC
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHh------cccchhhhhhhcCCC
Confidence 999987655555555578999999998 5889999999999999999988887777775 479999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 009647 370 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR 449 (530)
Q Consensus 370 ~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~ 449 (530)
..++..|+++|+||+.+++.+.+.+++.|+++.|+.+|.+++..++++|+|+|+|++.+. .++...+++.
T Consensus 288 ~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~----------~~~~~~v~~~ 357 (510)
T 3ul1_B 288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------QDQIQQVVNH 357 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC----------HHHHHHHHHT
T ss_pred hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc----------HHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999998753 4678899999
Q ss_pred CChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647 450 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 450 g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~ 523 (530)
|+++.|+.+|.+++.+++..+.++|.|+...+. ......+.+.|+++.|..|..+.++++...+...|.+++.
T Consensus 358 g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~-~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987643 2345678899999999999999999999999888877654
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.3e-38 Score=337.71 Aligned_cols=405 Identities=17% Similarity=0.200 Sum_probs=329.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh
Q 009647 96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 175 (530)
Q Consensus 96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~ 175 (530)
+..++..+.++++..+..|+..|+++.+..+ .....+++.|++|.|+.+|.+++ ...+..++.+|.+++.++++....
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344445568999999999999999966543 34566778999999999999755 556566888999999988888877
Q ss_pred hc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 176 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 176 i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
+. |++|.|+.+|.+......++.++.+|.|++. ++..+..+++.|++++|+.++.++++.++++++|+|+||+++..
T Consensus 181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence 76 7999999999886677888899999999997 67899999999999999999999999999999999999998642
Q ss_pred CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC-CCccchhhhHHHH
Q 009647 254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-NSLQLLIPVLRSL 332 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~v~~~al~~L 332 (530)
+ .+. ..+++|.|++++.+++++++..++|+|++|+.++++....+.+.|+++.|+++|..+ .++.++.+|+++|
T Consensus 260 ~---~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 260 K---QEG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp T---CSC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h---hHH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 2 122 358999999999999999999999999999997778899999999999999999642 3468899999999
Q ss_pred hhhhcCCccc---cchhcccCCCcchhhHHHHHHHhccCc-HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc
Q 009647 333 GNLVAGDSST---ISDVLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 408 (530)
Q Consensus 333 ~nl~~~~~~~---~~~~i~~g~~~~~~~l~~L~~lL~~~~-~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~ 408 (530)
+|++.+++.. ...+++ .|++|.|+.+|.+++ +.+++.|+|+|+|++.+.. ..+.+++.|++|.|+++|.
T Consensus 335 ~nl~~~~~~~~~~~~~i~~------~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~ 407 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHH------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHH------cCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHH
Confidence 9998765431 234553 469999999999876 5999999999999998754 4578889999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCCCCchhH--------------HHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHH
Q 009647 409 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI--------------QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFM 474 (530)
Q Consensus 409 ~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~--------------~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L 474 (530)
++++++|++|+|+++|.+... ++++.++ .+....+.+.|++++|+.++.+++++++..+..+|
T Consensus 408 ~~~~~v~~~a~~~l~n~~~~~---~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l 484 (529)
T 1jdh_A 408 RAHQDTQRRTSMGGTQQQFVE---GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484 (529)
T ss_dssp HHHHHHC-----------CBT---TBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHhHHHHHHHhcccCchhhhc---cccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHH
Confidence 999999999999999932211 1222211 12335678899999999999999999999999999
Q ss_pred HHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 475 ELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 475 ~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
.++.. +..++..+.+.||++.|+.|++|+|++|+++|..+|+++
T Consensus 485 ~~l~~---~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 485 CELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHTT---SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhc---CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99853 235678899999999999999999999999999999864
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=345.20 Aligned_cols=407 Identities=17% Similarity=0.198 Sum_probs=330.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh
Q 009647 97 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL 176 (530)
Q Consensus 97 ~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i 176 (530)
..++..+.++++..+..|+..|+++.+.. ......+++.|++|.|+.+|.+++ +..+..++.+|++++.++++.+..+
T Consensus 101 ~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~~i 178 (644)
T 2z6h_A 101 PALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLII 178 (644)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 33444456899999999999999997654 345567778999999999999765 4555557789999999888888777
Q ss_pred c--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC
Q 009647 177 L--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP 254 (530)
Q Consensus 177 ~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~ 254 (530)
. |++|.|+.+|.+.....+++.++.+|.|++. ++..|..+++.|+++.|+.++.+++..++++++|+|+|||++...
T Consensus 179 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~ 257 (644)
T 2z6h_A 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 257 (644)
T ss_dssp HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence 7 7999999999986678899999999999997 678999999999999999999999999999999999999986422
Q ss_pred CchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC-ccchhhhHHHHh
Q 009647 255 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS-LQLLIPVLRSLG 333 (530)
Q Consensus 255 ~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~-~~v~~~al~~L~ 333 (530)
.+. ..+++|.|++++.+++++++..++|+|++|+.++++..+.+.+.|+++.|+.+|...++ +.++.+|+++|+
T Consensus 258 ---~~~--~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~ 332 (644)
T 2z6h_A 258 ---QEG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332 (644)
T ss_dssp ---CCS--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hhh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 122 35899999999999999999999999999999878888999999999999999964343 689999999999
Q ss_pred hhhcCCcc--ccch-hcccCCCcchhhHHHHHHHhccCc-HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647 334 NLVAGDSS--TISD-VLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST 409 (530)
Q Consensus 334 nl~~~~~~--~~~~-~i~~g~~~~~~~l~~L~~lL~~~~-~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~ 409 (530)
|++..+.. +.+. +++ .++++.|+.+|.+.+ +.++++|+|+|+||+.+... .+.+++.|++|.|+++|.+
T Consensus 333 nL~~~~~~~~~~q~~v~~------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 333 HLTSRHQEAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHTSSSTTHHHHHHHHHH------TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHH------ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhc
Confidence 99975432 3343 443 479999999999875 69999999999999987644 4888999999999999998
Q ss_pred CChhHHHHHHHHHHH--hcCCCCCCCCCchhH--------------HHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHH
Q 009647 410 SPFDIKKEVAYVLGN--LCVSPTEGEGKPKLI--------------QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQF 473 (530)
Q Consensus 410 ~~~~v~~eA~~aL~n--l~~~~~~~~~~~~~~--------------~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~ 473 (530)
+++++|++|+|+++| ++.+ +++.++ .+....+.+.|++++|+++|.+.++.++..++.+
T Consensus 406 ~~~~vr~~a~~al~n~~~~~~-----~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~a 480 (644)
T 2z6h_A 406 AHQDTQRRTSMGGTQQQFVEG-----VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 480 (644)
T ss_dssp HHHHHTTC----------CCS-----SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred cchhhhhHhhhccccchhccc-----ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 888888888887777 4321 222111 1122467799999999999999999999999999
Q ss_pred HHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHH------------------HHH--HHHHHHhhcCCCC
Q 009647 474 MELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDL------------------RNM--ANGLVDKYFGEDY 526 (530)
Q Consensus 474 L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i------------------~~~--A~~il~~~f~~~~ 526 (530)
|.++.. +.+.+..++++||++.|..|++++|+++ |++ +..++++||..+.
T Consensus 481 L~~l~~---~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 481 LCELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp HHHHHT---SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHc---CHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 999874 2346788999999999999999999999 444 6677888887653
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=4.8e-39 Score=349.92 Aligned_cols=396 Identities=15% Similarity=0.096 Sum_probs=321.5
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHcCCC-CCcHHHHHHcC----CHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCChhhHH
Q 009647 101 AYHGKGAMQKRVNALRELRRLLSRFE-FPPIETALKAG----AIPVLVQCLAFG-SPDEQLLEAAWCLTNIAAGKQEETK 174 (530)
Q Consensus 101 ~~l~s~d~~~~~~a~~~lr~lls~~~-~~~~~~ii~~g----~v~~Lv~lL~~~-~~~~~~~eA~~~L~nia~~~~~~~~ 174 (530)
..+.+++...+..|+..|+++-+... +++. ..++.| ++|.|+.+|.++ .+++.+..|+|+|.+++.+......
T Consensus 337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~-~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~ 415 (810)
T 3now_A 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAI-RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEK 415 (810)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSC-CSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccCccc-cchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34457888899999999999854322 2221 123333 467788888876 1355667899999999987654444
Q ss_pred hhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-----------------------------hhH---HHHHhc
Q 009647 175 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-----------------------------EFR---NVLLSQ 220 (530)
Q Consensus 175 ~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-----------------------------~~r---~~~~~~ 220 (530)
.+. |++|.|+.+|++ +++.++..|+|+|+||+.+.+ ..+ +.+++.
T Consensus 416 lv~d~g~Ip~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea 494 (810)
T 3now_A 416 LIEDKASIHALMDLARG-GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE 494 (810)
T ss_dssp HHHCHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHccchHHHHHHHhCC-CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC
Confidence 443 699999999997 788999999999999998542 123 688999
Q ss_pred CChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhH
Q 009647 221 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 300 (530)
Q Consensus 221 g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 300 (530)
|++|+|+.++.++++.+++.|+|+|+||+.. ...+..+...|++|.|+.+|.++++..+..|+|+|.+|+.+.+...
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d---~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCGL---KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 9999999999999999999999999999953 2367777789999999999999999999999999999997433322
Q ss_pred HH--HHhcCchHHHHHHHhcCCCc-cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHH
Q 009647 301 SL--LVKSGVLQLLVERLATSNSL-QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 377 (530)
Q Consensus 301 ~~--i~~~g~l~~Lv~lL~~~~~~-~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~ 377 (530)
.. ....|++++|+.+|. ++.. ..+..|+++|+|++.+++...+.+++. |++|.|+.+|.++++.+++.|+
T Consensus 572 ~~~~~~~~~aIppLv~LL~-~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a------G~l~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQ-QDCTALENFESLMALTNLASMNESVRQRIIKE------QGVSKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHHHSCCTTHHHHHH
T ss_pred hhcchhhhcHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc------CCHHHHHHHHcCCCHHHHHHHH
Confidence 10 012468999999984 4422 334689999999999988877788854 6999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHh-CCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-cCChHHH
Q 009647 378 WVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-RGCLSGF 455 (530)
Q Consensus 378 ~~Lsnl~~~~~~~~~~li~-~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-~g~i~~L 455 (530)
|+|+||+.+. +....+++ .|.++.|+.++.+.+..+|++|+|+|+|++.++ ..+++.+++ .|++++|
T Consensus 645 ~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s----------~~~~~~ii~~~g~I~~L 713 (810)
T 3now_A 645 QCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS----------VKCCEKILAIASWLDIL 713 (810)
T ss_dssp HHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC----------HHHHHHHHTSTTHHHHH
T ss_pred HHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHcCCHHHH
Confidence 9999999865 45555555 789999999999999999999999999998732 367889998 8999999
Q ss_pred HhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC---CcHHHHHHHHHHHHhh
Q 009647 456 IDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH---ENEDLRNMANGLVDKY 521 (530)
Q Consensus 456 ~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~---~~~~i~~~A~~il~~~ 521 (530)
+.+|.++|.+++..++++|.|+.... ......+.++||++.|..|... .+.++++.|...|+..
T Consensus 714 v~LL~s~d~~vq~~A~~aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 714 HTLIANPSPAVQHRGIVIILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 99999999999999999999998743 2456888999999999998643 4899999998888776
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=8.8e-38 Score=333.41 Aligned_cols=365 Identities=21% Similarity=0.317 Sum_probs=319.5
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647 138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214 (530)
Q Consensus 138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~-~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 214 (530)
.++.++..+.+++ ++.|++|+..+.++.+.. ....+.++ |+||.|+++|..++++.++..|+|+|+|||.++++.+
T Consensus 77 ~l~~lv~~l~s~d-~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 77 SVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 5788888998866 678899999999876543 33455666 8999999999876789999999999999999888999
Q ss_pred HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH-----HHHHHHHHHH
Q 009647 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-----ELTTEVAWVV 289 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-----~v~~~a~~~L 289 (530)
..+++.|++|+|+.++.+++..+++.|+|+|+||+... ...++.+...|+++.|+.++..++. .++..++|+|
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~--~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999642 3456677789999999999986653 4688999999
Q ss_pred HHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc
Q 009647 290 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH 369 (530)
Q Consensus 290 ~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~ 369 (530)
++++.+...........|+++.|+.+| .+++++++..|+++|++++.+++...+.+++ .|++|.|+.+|.+++
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~------~g~i~~Lv~lL~~~~ 306 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVK------KGVVPQLVKLLGATE 306 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT------TTCHHHHHHHHTCSC
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh------ccchHHHHHHhcCCC
Confidence 999987655555555678999999998 5889999999999999999988887777775 479999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 009647 370 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR 449 (530)
Q Consensus 370 ~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~ 449 (530)
..++..|+++|+||+.+++.+.+.+++.|+++.|+.+|.+++..++++|+|+|+|++.+. .++...+++.
T Consensus 307 ~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~----------~~~~~~v~~~ 376 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------QDQIQQVVNH 376 (529)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC----------HHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc----------HHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999753 4678889999
Q ss_pred CChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647 450 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 450 g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~ 523 (530)
|++++|+.+|.+++.+++..+.++|.|+...+. ......+.+.|+++.|..|..++++++...+...|.+++.
T Consensus 377 g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~-~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 377 GLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987543 2345677899999999999999999999999888877653
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=4.7e-38 Score=331.66 Aligned_cols=361 Identities=20% Similarity=0.231 Sum_probs=293.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC-Chh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG-KQE 171 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~-~~~ 171 (530)
++.+++++ .+++++.+..|+..|+++.. ........+++.|+||.||++|.+++ +.+|..|+|+|.||+.+ +++
T Consensus 50 i~~LV~~L---~s~~~~~q~~Aa~~L~~La~-~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 50 LPEVIAML---GFRLDAVKSNAAAYLQHLCY-RNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp HHHHHHHT---TCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHH
T ss_pred HHHHHHHH---CCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHH
Confidence 44555554 58999999999999999854 44456678899999999999999866 77889999999999997 577
Q ss_pred hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC------------------
Q 009647 172 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML------------------ 231 (530)
Q Consensus 172 ~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~------------------ 231 (530)
++..++ |+||.|+.+|.+..+.+++++|+|+|.|++. +++.+..++. +++|+|++++.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 888887 8999999999875678999999999999998 6788888885 57999999871
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchHHHHHHHhcc------CCHHHHHHHHHHHHHhhcCCc-------
Q 009647 232 PNKGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLLDAILRHLKR------ADEELTTEVAWVVVYLSALSN------- 297 (530)
Q Consensus 232 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~-~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~L~~~~~------- 297 (530)
.++..++++|+|+|.||+... + ..+..+. ..|+++.|+.++.+ .+...+.+|+|+|.||+....
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~-~-~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSER-S-EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSC-H-HHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccHHHHHHHHHHHHHHhcCC-H-HHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 235799999999999999753 2 2244443 45778899999974 466899999999999996411
Q ss_pred ------------------hhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc---cchhcccCCCcchh
Q 009647 298 ------------------VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST---ISDVLVPGHGITDQ 356 (530)
Q Consensus 298 ------------------~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~---~~~~i~~g~~~~~~ 356 (530)
..++.+...++++.|+.+|..+.++.++.+|+++|.|++.+.... .+.++. ..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~-----~~~ 355 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR-----QEK 355 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT-----SHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH-----HcC
Confidence 112233445667788999976778899999999999999876432 233332 357
Q ss_pred hHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC--------ChhHHHHHHHHHHHhcCC
Q 009647 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--------PFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~--------~~~v~~eA~~aL~nl~~~ 428 (530)
++|.|+.+|.+++..+++.|+|+|+||+.+.. .+.++..|++|.|+++|.++ +.++...|+|+|.|++.+
T Consensus 356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~ 433 (584)
T 3l6x_A 356 ALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE 433 (584)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998753 34456789999999999876 357899999999999864
Q ss_pred CCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC--CHHHHHHHHHHHHHHHc
Q 009647 429 PTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--DIEAARLGLQFMELVLR 479 (530)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--d~~i~~~~L~~L~~il~ 479 (530)
. .++.+.+++.|+|+.|+.+|.+. .+.+++.|..+|.+++.
T Consensus 434 ~----------~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 434 N----------LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp C----------HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred C----------HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 2 37788999999999999999986 78999999999999974
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.6e-37 Score=331.69 Aligned_cols=366 Identities=19% Similarity=0.298 Sum_probs=319.8
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-hhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 212 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~-~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~ 212 (530)
...+|.|+..|.+++ +..+.+|+++|.+++++.. .....++ |++|.|+.+|.+++++.++..|+|+|+|++.++++
T Consensus 73 ~~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 73 LESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp --CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 346999999998765 7788899999999987664 4555555 89999999998844499999999999999998899
Q ss_pred hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHHHHHHH
Q 009647 213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVY 291 (530)
Q Consensus 213 ~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~ 291 (530)
.+..+++.|++|+|+.+|.+++..+++.|+|+|+||+... ...+..+...+++|.|+.++ .+.++.++..++|+|++
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS--PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC--HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999653 23455666789999999999 67789999999999999
Q ss_pred hhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh
Q 009647 292 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 371 (530)
Q Consensus 292 L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~ 371 (530)
|+.+.+. .......|+++.|+.+| .++++.++..|+++|++++.+.+...+.+++ .|+++.|+.+|.++++.
T Consensus 230 L~~~~~~-~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~------~g~v~~Lv~lL~~~~~~ 301 (528)
T 4b8j_A 230 FCRGKPQ-PSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIE------AGVCPRLVELLLHPSPS 301 (528)
T ss_dssp HHCSSSC-CCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH------TTCHHHHHHHTTCSCHH
T ss_pred HHcCCCC-CcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------cCHHHHHHHHHcCCChh
Confidence 9986432 23344589999999999 5888999999999999999888777777775 47999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC-ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC
Q 009647 372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS-PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 450 (530)
Q Consensus 372 i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~-~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g 450 (530)
++..|+|+|+||+.+++...+.+++.|++|.|+.+|.++ ++.++++|+|+|+|++.+. .+++..+++.|
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~----------~~~~~~~~~~~ 371 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN----------KDQIQAVINAG 371 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC----------HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC----------HHHHHHHHHCC
Confidence 999999999999999999999999999999999999998 9999999999999998742 36788999999
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~ 523 (530)
+++.|+.+|.+++++++..++++|.++...+. ......+.+.|+++.|..+..++++++...|...|.+++.
T Consensus 372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 372 IIGPLVNLLQTAEFDIKKEAAWAISNATSGGS-HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987642 2345667788999999999999999999999988888764
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.4e-37 Score=327.97 Aligned_cols=372 Identities=18% Similarity=0.191 Sum_probs=302.5
Q ss_pred HHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC-C
Q 009647 134 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-G 210 (530)
Q Consensus 134 i~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d-~ 210 (530)
.+.+.+|.||.+|.+++ +.+|++|+|+|.+++.++.+++..++ |+||.|+.+|.+ ++++++++|+|+|+||+.. +
T Consensus 45 ~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSC
T ss_pred cccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCC
Confidence 35789999999999876 77889999999999999988888887 899999999998 7899999999999999984 6
Q ss_pred chhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--------------
Q 009647 211 EEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-------------- 275 (530)
Q Consensus 211 ~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-------------- 275 (530)
+++|..+++.|+||+|+.+|.+ .+.+++++++|+|+||+..+ .. +..+. .+++|.|++++.
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~-k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~ 198 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SI-KMEIV-DHALHALTDEVIIPHSGWEREPNEDC 198 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GG-HHHHH-HHTHHHHHHHTHHHHHCCC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hh-hHHHH-hccHHHHHHHHhcccccccccccccc
Confidence 8999999999999999999996 57899999999999999753 23 33333 468999999872
Q ss_pred ----cCCHHHHHHHHHHHHHhhcCCchhHHHHHhc-CchHHHHHHHhcC-----CCccchhhhHHHHhhhhcCCcccc--
Q 009647 276 ----RADEELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERLATS-----NSLQLLIPVLRSLGNLVAGDSSTI-- 343 (530)
Q Consensus 276 ----~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~-g~l~~Lv~lL~~~-----~~~~v~~~al~~L~nl~~~~~~~~-- 343 (530)
.++++++.+++|+|.||+..+++..+.+.+. |+++.|+.+|..+ .+...+.+|+++|.|++...+...
T Consensus 199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~ 278 (584)
T 3l6x_A 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ 278 (584)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence 2367999999999999998777767778774 6678999998532 456788999999999997631110
Q ss_pred ----ch----------hccc-CCC--cchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCH---HHHHHHH-hCCcHH
Q 009647 344 ----SD----------VLVP-GHG--ITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSV---EHKQLIH-SSEALA 401 (530)
Q Consensus 344 ----~~----------~i~~-g~~--~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~---~~~~~li-~~~~l~ 401 (530)
.. +.+. |.. +..++++.|+.+|. +.++.+++.|+|+|+||+++.. ..++.++ +.+++|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp 358 (584)
T 3l6x_A 279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358 (584)
T ss_dssp CCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence 00 0011 110 24578899999995 4578999999999999998752 2334444 468899
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC--------CHHHHHHHHHH
Q 009647 402 LLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--------DIEAARLGLQF 473 (530)
Q Consensus 402 ~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--------d~~i~~~~L~~ 473 (530)
.|+.+|.+++..+++.|+|+|+|++.++. .+..+..|+++.|+.+|..+ ..+++..++.+
T Consensus 359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~------------~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~t 426 (584)
T 3l6x_A 359 AIADLLTNEHERVVKAASGALRNLAVDAR------------NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNT 426 (584)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCS------------CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCChh------------HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999997531 13455789999999999986 36788889999
Q ss_pred HHHHHccCCCCcchhHHHHhchHHHHHHHhcCC--cHHHHHHHHHHHHhhcCCC
Q 009647 474 MELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDKYFGED 525 (530)
Q Consensus 474 L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~--~~~i~~~A~~il~~~f~~~ 525 (530)
|.||+... ....+.|.+.||++.|..|..+. .+.+.+.|..+|..+|.+.
T Consensus 427 L~NL~a~~--~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 427 INEVIAEN--LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HHHHHTTC--HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHhcCC--HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 99998542 34678889999999999998875 8999999999999998754
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2e-36 Score=323.34 Aligned_cols=369 Identities=17% Similarity=0.249 Sum_probs=321.3
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 212 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~-~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~ 212 (530)
.+.+|.|+..|.+++ +..+..|+++|.++.+.. ......++ |++|.|+.+|.+++++.++..|+|+|++++.++++
T Consensus 86 ~~~i~~lv~~L~s~~-~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp -CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 467999999999875 678889999999997653 33344444 79999999998844899999999999999998889
Q ss_pred hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009647 213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL 292 (530)
Q Consensus 213 ~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L 292 (530)
.+..++..|++++|+.+|.++++.+++.|+|+|++|+... ...++.+...+++|.|+.++.+.+++++..++|+|++|
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--ccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999653 23455555789999999999999999999999999999
Q ss_pred hcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhH
Q 009647 293 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL 372 (530)
Q Consensus 293 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i 372 (530)
+.+...........++++.|+.+| .++++.++..|+++|++++.+.+...+.+++ .|+++.|+.+|.+.++.+
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~------~~~v~~Lv~lL~~~~~~v 315 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVID------VRIPKRLVELLSHESTLV 315 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH------TTCHHHHHHGGGCSCHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh------cCcHHHHHHHHCCCChhh
Confidence 986534445566789999999999 5788899999999999999887777777764 479999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647 373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452 (530)
Q Consensus 373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i 452 (530)
+..|+|+|+|++.+++...+.+++.|++|.|+.+|.++++.++++|+|+|+|++.+. .++++.+++.|++
T Consensus 316 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~----------~~~~~~~~~~~~l 385 (530)
T 1wa5_B 316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN----------TEQIQAVIDANLI 385 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC----------HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----------HHHHHHHHHCCCH
Confidence 999999999999999888999999999999999999999999999999999998642 3677888999999
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCC-CcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647 453 SGFIDLVRSADIEAARLGLQFMELVLRGMPN-HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 524 (530)
Q Consensus 453 ~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~-~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~ 524 (530)
+.|+.+|..++++++..++++|.+++..+.. ......+.+.|+++.|..+..+++++++..|...|.+++..
T Consensus 386 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999876421 13456677899999999999999999999999999888754
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.3e-35 Score=326.58 Aligned_cols=404 Identities=17% Similarity=0.209 Sum_probs=324.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh
Q 009647 96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 175 (530)
Q Consensus 96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~ 175 (530)
+..++..+.++++..+..|+.+|.++.+... .....+.+.|++|.|+.+|.+++ ..++..|+.+|.+++.++.+....
T Consensus 236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHH
Confidence 3345555678999999999999999966533 33455668999999999999754 556566899999999888777777
Q ss_pred hc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 176 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 176 i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
+. ++++.|+.+|.+.+....++.++.+|.+++. ++..+..+++.|+++.|+.++.+++..++++++|+|.+|+....
T Consensus 314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence 66 6899999999986667788899999999997 57889999999999999999999999999999999999997653
Q ss_pred CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCc-cchhhhHHHH
Q 009647 254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL-QLLIPVLRSL 332 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~-~v~~~al~~L 332 (530)
.. .. ..+++|.|+.+|.+++++++..++|+|++|+.++++....+++.|+++.|+.+|..+.+. .++.+|+++|
T Consensus 393 ~~---~~--~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 393 KQ---EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TC---SC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh---hh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 21 11 358999999999999999999999999999998888889999999999999999643443 8999999999
Q ss_pred hhhhcCCccc--c-chhcccCCCcchhhHHHHHHHhccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc
Q 009647 333 GNLVAGDSST--I-SDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 408 (530)
Q Consensus 333 ~nl~~~~~~~--~-~~~i~~g~~~~~~~l~~L~~lL~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~ 408 (530)
+||+..+... . ..+.+ .++++.|+.+|.+.+. .++++|+|+|+||+.+. .....+.+.|++|.|+.+|.
T Consensus 468 ~nL~~~~~~~~~~~~~v~~------~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHH------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHH------cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHH
Confidence 9998755431 1 23443 4689999999998775 99999999999999865 44578889999999999998
Q ss_pred CCChhHHHHHHHHHHH--hcCCCCCCCCCchhH--------------HHHHHHHHhcCChHHHHhhhccCCHHHHHHHHH
Q 009647 409 TSPFDIKKEVAYVLGN--LCVSPTEGEGKPKLI--------------QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ 472 (530)
Q Consensus 409 ~~~~~v~~eA~~aL~n--l~~~~~~~~~~~~~~--------------~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~ 472 (530)
+++++++++|+|+++| ++.+ +++.++ .+....+.+.|++++|+.+|.++++.++..++.
T Consensus 541 ~~~~~~~~~aa~al~nq~~~~~-----~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~ 615 (780)
T 2z6g_A 541 RAHQDTQRRTSMGGTQQQFVEG-----VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 615 (780)
T ss_dssp HHHHHHHHTTC------CCSTT-----CCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHH
T ss_pred hcchhHHHHHhhccccchhhcc-----cChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 8777777766666665 3221 111111 123345778999999999999999999999999
Q ss_pred HHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647 473 FMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 473 ~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f 522 (530)
+|.++.. +...+..|.+.||++.|..|+++++++|++.|...|.++.
T Consensus 616 aL~~L~~---~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 616 VLCELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp HHHHHHT---SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhc---CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999863 2356788999999999999999999999766554444443
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.2e-35 Score=310.07 Aligned_cols=371 Identities=19% Similarity=0.255 Sum_probs=312.1
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 009647 92 AVEELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 170 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~-d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~ 170 (530)
.++.|.+++. ++ ++..+..|+..|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+.+
T Consensus 65 ~i~~L~~~L~---~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~ 139 (450)
T 2jdq_A 65 VVARFVEFLK---RKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDST 139 (450)
T ss_dssp HHHHHHHHHT---CTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHC---CCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCH
Confidence 3456666654 66 8999999999999996543 233456778999999999999765 6787889999999999888
Q ss_pred hhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC-chhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHH
Q 009647 171 EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN 247 (530)
Q Consensus 171 ~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~n 247 (530)
+.+..++ |++|.|+.+|.+.++..++..|+|+|+|++.+. +..+..+ ..+++|.|+.++.+++..++..++|+|++
T Consensus 140 ~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 7777776 799999999986568999999999999999765 3333333 37899999999999999999999999999
Q ss_pred hhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhh
Q 009647 248 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP 327 (530)
Q Consensus 248 L~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~ 327 (530)
|+.+.. .....+...+++|.|+.++.+++++++..++|+|++++.+.+...+.+++.|+++.|+.+| .++++.++..
T Consensus 219 l~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~ 295 (450)
T 2jdq_A 219 LSDGPN--DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKE 295 (450)
T ss_dssp HTSSSH--HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHH
T ss_pred HHCCCc--HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHH
Confidence 997632 2233444679999999999999999999999999999998887788888999999999999 4778899999
Q ss_pred hHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHH
Q 009647 328 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHL 406 (530)
Q Consensus 328 al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~l 406 (530)
|+++|+|++.+++...+.+++ .+++|.|+.+|.++++.+|..|+|+|+|++.+ ++++++.+++.|++|.|+++
T Consensus 296 a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~l 369 (450)
T 2jdq_A 296 ACWTISNITAGNRAQIQTVID------ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH------TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHG
T ss_pred HHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH
Confidence 999999999988877777774 47999999999999999999999999999975 67888889999999999999
Q ss_pred hcCCChhHHHHHHHHHHHhcCCCCCC----CCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647 407 LSTSPFDIKKEVAYVLGNLCVSPTEG----EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 407 L~~~~~~v~~eA~~aL~nl~~~~~~~----~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~ 480 (530)
+.+++++++..|+|+|.|++...... .+. +..++..+.+.|+++.|..++.++++++...++.+|.+++..
T Consensus 370 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~---~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 370 LTVMDSKIVQVALNGLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp GGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---CCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred hcCCCHHHHHHHHHHHHHHHHhchhhhhccccc---hhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 99999999999999999998632100 000 013456788899999999999999999999999999999843
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=299.39 Aligned_cols=326 Identities=18% Similarity=0.145 Sum_probs=269.1
Q ss_pred HHHHHHHHHhcCC---------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCH----------HHHHHHhcCCC--C
Q 009647 93 VEELKSAVAYHGK---------GAMQKRVNALRELRRLLSRFEFPPIETALKAGAI----------PVLVQCLAFGS--P 151 (530)
Q Consensus 93 ~~~l~~~l~~l~s---------~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v----------~~Lv~lL~~~~--~ 151 (530)
++-|+++++.-.. ++++.+++|+.+|.++.+..++. .+...+.|++ +.+++++.+.. .
T Consensus 72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (458)
T 3nmz_A 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDD-KRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM 150 (458)
T ss_dssp HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcch-hHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 5667777762111 55899999999999998876543 4566778888 77888887542 0
Q ss_pred h-----------HHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcC----------CCCHHHHHHHHHHHHhhcC
Q 009647 152 D-----------EQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGE----------KSSSPVAEQCAWALGNVAG 208 (530)
Q Consensus 152 ~-----------~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~----------~~~~~v~~~a~~~L~nla~ 208 (530)
+ ..+..|+|+|.|++.+ ++.++.++ |+++.|+.+|.. +.++.+++.|+|+|.|||.
T Consensus 151 ~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~ 229 (458)
T 3nmz_A 151 DQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229 (458)
T ss_dssp CCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence 1 1235799999999765 77888887 899999999941 1346799999999999999
Q ss_pred CCchhHHHHHh-cCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHH
Q 009647 209 EGEEFRNVLLS-QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVA 286 (530)
Q Consensus 209 d~~~~r~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~ 286 (530)
+++..+..+.. .|+||+|+.+|.+++.++++.++|+|+||+.+.++ ..+..+...|++|.|+++| .+.+++++..++
T Consensus 230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~-~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-NSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCH-HHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCH-HHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 87778877765 56699999999999999999999999999975322 3456666789999999975 567889999999
Q ss_pred HHHHHhhcCCchhHHHHH-hcCchHHHHHHHhcCCCc----cchhhhHHHHhhhhc---CCccccchhcccCCCcchhhH
Q 009647 287 WVVVYLSALSNVATSLLV-KSGVLQLLVERLATSNSL----QLLIPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVI 358 (530)
Q Consensus 287 ~~L~~L~~~~~~~~~~i~-~~g~l~~Lv~lL~~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~i~~g~~~~~~~l 358 (530)
++|++|+...+++...+. ..|+++.|+.+|. +.+. +++..|+++|.|++. +++...+.++++ |++
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~------G~i 381 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN------NCL 381 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT-CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT------THH
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc------ccH
Confidence 999999984545555555 7899999999995 4443 378999999999997 777788888754 699
Q ss_pred HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 359 ~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
|.|+.+|.+++..++++|+|+|+|++.+++++++.+++.|++|+|+++|.+++.++++.|+|+|.||+.+
T Consensus 382 ~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 382 QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999988999999999999999999999999999999999999999975
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.3e-33 Score=301.07 Aligned_cols=399 Identities=18% Similarity=0.228 Sum_probs=326.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
.++.+++++. .++|++.+..|+..|+++ +..++ +...+++.|++|.|+++|.+++ +.++..|+|+|.|++.++++
T Consensus 60 ~i~~Lv~~L~--~~~~~~~~~~a~~~L~~l-s~~~~-~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~ 134 (529)
T 1jdh_A 60 MVSAIVRTMQ--NTNDVETARCTAGTLHNL-SHHRE-GLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG 134 (529)
T ss_dssp HHHHHHHHHH--HCCCHHHHHHHHHHHHHH-TTSHH-HHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHh--cCCCHHHHHHHHHHHHHH-HcCch-hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcc
Confidence 3556666664 245899999999999997 54433 5677889999999999999866 77888999999999988766
Q ss_pred hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHh
Q 009647 172 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNL 248 (530)
Q Consensus 172 ~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL 248 (530)
.+..+. |++|.|+.+|.+ ++++++..++.+|+|++.++++.+..+.+.|+++.|+.++.++ +......++.+|.+|
T Consensus 135 ~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 135 AKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp HHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 666665 899999999998 7899999999999999998899999999999999999999865 456777889999999
Q ss_pred hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647 249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328 (530)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a 328 (530)
+... . .+..+...|++|.|+.++.+++++++..++|+|.+|+...+... ...|+++.|+.+| .+.+++++..|
T Consensus 214 ~~~~--~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll-~~~~~~v~~~a 286 (529)
T 1jdh_A 214 SVCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLL-GSDDINVVTCA 286 (529)
T ss_dssp TTST--T-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred hcCc--c-cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHH-cCCCHHHHHHH
Confidence 9643 3 34455568999999999999999999999999999998543221 2247899999999 57889999999
Q ss_pred HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHHHHHHhcCCHH---HHHHHHhCCcHHHH
Q 009647 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVE---HKQLIHSSEALALL 403 (530)
Q Consensus 329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~Lsnl~~~~~~---~~~~li~~~~l~~L 403 (530)
+++|+|++.+++...+.+.+ .|+++.|+.+|.+. ++.++..|+++|+|++.++++ ....+++.|++|.|
T Consensus 287 ~~~L~~L~~~~~~~~~~~~~------~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L 360 (529)
T 1jdh_A 287 AGILSNLTCNNYKNKMMVCQ------VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360 (529)
T ss_dssp HHHHHHHTTTCHHHHHHHHH------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH------cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHH
Confidence 99999999887767777775 46999999999763 379999999999999886433 35678899999999
Q ss_pred HHHhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHH-------------
Q 009647 404 LHLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARL------------- 469 (530)
Q Consensus 404 i~lL~~~~-~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~------------- 469 (530)
+.+|.+++ ..++++|+|+|+|++.++ +....+++.|+++.|+++|..++++++..
T Consensus 361 ~~lL~~~~~~~v~~~a~~~l~nl~~~~-----------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~ 429 (529)
T 1jdh_A 361 VKLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429 (529)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHTTSG-----------GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT
T ss_pred HHHhccccchHHHHHHHHHHHHHhcCh-----------hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc
Confidence 99999876 599999999999998742 22367889999999999998876666554
Q ss_pred ---------HHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647 470 ---------GLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 470 ---------~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~ 523 (530)
++.+|.+++. ....+..+.+.|+++.|..+..++++++++.|...+.++..
T Consensus 430 ~~~~~i~~~~~~al~~L~~---~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 430 VRMEEIVEGCTGALHILAR---DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp BCHHHHHHHHHHHHHHHTT---SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHhc---CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 4444555542 22345678889999999999999999999999988887653
No 23
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=7e-34 Score=285.30 Aligned_cols=272 Identities=22% Similarity=0.252 Sum_probs=234.1
Q ss_pred CHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-----------CChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647 192 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-----------NKGSTVRTAAWALSNLIKGPDPKPATEL 260 (530)
Q Consensus 192 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 260 (530)
....+.+|+|+|+|++.+ +++|+.+++.|++++|+.+|.. .++.++++|+|+|.|||.+++ ..+..
T Consensus 45 ~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~--~~k~~ 121 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKAT 121 (354)
T ss_dssp GGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH--HHHHH
T ss_pred chHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH--HHHHH
Confidence 345667999999999997 7999999999999999999952 246899999999999998742 23444
Q ss_pred H-HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 261 I-KVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 261 v-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
+ ...|++|.|+++|.+++++++..++|+|.||+.+ ++++...+.+.|+++.|+++|..+.+..++.+|+++|+|++.+
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 4 2456799999999999999999999999999985 4567888899999999999865677888999999999999985
Q ss_pred Cccccchhc-ccCCCcchhhHHHHHHHhccCcH----hHHHHHHHHHHHHhc---CCHHHHHHHHhCCcHHHHHHHhcCC
Q 009647 339 DSSTISDVL-VPGHGITDQVIAVLVKCLKSEHR----VLKKEAAWVLSNIAA---GSVEHKQLIHSSEALALLLHLLSTS 410 (530)
Q Consensus 339 ~~~~~~~~i-~~g~~~~~~~l~~L~~lL~~~~~----~i~~~A~~~Lsnl~~---~~~~~~~~li~~~~l~~Li~lL~~~ 410 (530)
.+.....+. . .|++|.|+.+|.+.+. .+++.|+|+|+|++. +++++++.+++.|++|+|+.+|.++
T Consensus 202 ~~~nk~~i~~~------~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~ 275 (354)
T 3nmw_A 202 CTENKADICAV------DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 275 (354)
T ss_dssp CHHHHHHHHHS------TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS
T ss_pred ChhhhHHHHHh------cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 544333333 3 4799999999987654 499999999999997 7889999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647 411 PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482 (530)
Q Consensus 411 ~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~ 482 (530)
+..++++|+|+|+|++.+. .++...+++.|++++|+++|.+++++++..+..+|.+|+...+
T Consensus 276 ~~~v~~~A~~aL~nLa~~~----------~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 276 SLTIVSNACGTLWNLSARN----------PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp CHHHHHHHHHHHHHHTSSC----------HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHHHHhCCC----------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999998642 3678899999999999999999999999999999999997643
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=297.87 Aligned_cols=400 Identities=18% Similarity=0.219 Sum_probs=328.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
.++.|++.+. .+++++.+..|+..|+.+ +.... ....+++.|++|.|+++|.+++ +.++..|+|+|.|++.+...
T Consensus 57 ~i~~Lv~~L~--~~~~~~~~~~A~~~L~~L-s~~~~-~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~ 131 (644)
T 2z6h_A 57 MVSAIVRTMQ--NTNDVETARCTAGTLHNL-SHHRE-GLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG 131 (644)
T ss_dssp HHHHHHHHHH--SCCCHHHHHHHHHHHHHH-TTSHH-HHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHh--cCCCHHHHHHHHHHHHHH-hcChh-hHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcch
Confidence 3556666665 245899999999999986 54433 5677888999999999999865 77888999999999988766
Q ss_pred hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHh
Q 009647 172 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNL 248 (530)
Q Consensus 172 ~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL 248 (530)
....+. |++|.|+.+|.+ ++++++..++.+|++++..+++.+..+.+.|+++.|+.++.+. ...++..++.+|.||
T Consensus 132 ~~~~v~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL 210 (644)
T 2z6h_A 132 AKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210 (644)
T ss_dssp HHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHCCChHHHHHHHCc-CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 666665 799999999998 6788888888899999987889999999999999999999876 467889999999999
Q ss_pred hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647 249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328 (530)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a 328 (530)
+... . .+..+...+++|.|+.++.+++..++..++|+|.+|+...... ....++++.|+.+| .+.++.++..|
T Consensus 211 s~~~--~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL-~~~d~~v~~~a 283 (644)
T 2z6h_A 211 SVCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL-GSDDINVVTCA 283 (644)
T ss_dssp TTCT--T-HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred hcCc--c-cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHH-cCCCHHHHHHH
Confidence 9643 3 3455557899999999999999999999999999999754321 11247899999999 57889999999
Q ss_pred HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHHHHHHhcCCH--HHHH-HHHhCCcHHHH
Q 009647 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSV--EHKQ-LIHSSEALALL 403 (530)
Q Consensus 329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~Lsnl~~~~~--~~~~-~li~~~~l~~L 403 (530)
+++|++++.+++...+.+++ .|+++.|+.+|.+. .+.++..|+++|+||+.+.+ +..+ .+++.|++|.|
T Consensus 284 ~~aL~~L~~~~~~~~~~v~~------~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L 357 (644)
T 2z6h_A 284 AGILSNLTCNNYKNKMMVCQ------VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 357 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHH------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH------cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHH
Confidence 99999999887776777775 46999999999863 27999999999999987543 2334 47889999999
Q ss_pred HHHhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC-------------------
Q 009647 404 LHLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD------------------- 463 (530)
Q Consensus 404 i~lL~~~~-~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d------------------- 463 (530)
+++|.+++ ..++++|+|+|+|++.++ +....+++.|+++.|+++|...+
T Consensus 358 ~~lL~~~~~~~v~~~a~~~L~nLa~~~-----------~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 358 VKLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHTTSG-----------GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred HHHhCccCchHHHHHHHHHHHHHccCH-----------HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence 99998875 699999999999998742 22378889999999999998743
Q ss_pred ---HHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647 464 ---IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 524 (530)
Q Consensus 464 ---~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~ 524 (530)
.+++..++.+|.++... ...+..+.+.|+++.|..+..++++++++.|...|.++..+
T Consensus 427 ~~~~~v~~~a~~aL~~La~~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILARD---VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTTS---HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHHHHhcC---HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 45666778888887643 24567788999999999999999999999999888876643
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1e-31 Score=298.58 Aligned_cols=398 Identities=18% Similarity=0.223 Sum_probs=326.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
.++.|++.+. .+.+++.+..|+..|+++ +.... ....+.+.|+||.|+.+|++++ +.++.+|+|+|.|++.++++
T Consensus 193 ~i~~Lv~~L~--~~~d~~vr~~Aa~aL~~L-s~~~~-~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 193 MVSAIVRTMQ--NTNDVETARCTSGTLHNL-SHHRE-GLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp HHHHHHHHHH--HCCCHHHHHHHHHHHHHH-HTSHH-HHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHc--CCCCHHHHHHHHHHHHHH-hCCch-hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChh
Confidence 3455555554 245899999999999996 54433 3667888999999999999865 77889999999999988777
Q ss_pred hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCC-hhHHHHHHHHHHHh
Q 009647 172 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-GSTVRTAAWALSNL 248 (530)
Q Consensus 172 ~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nL 248 (530)
.+..+. |++|.|+.+|.+ ++.++++.|+.+|.+++..+++.+..+.+.|+++.|+.++++.+ ......++.+|.+|
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 777775 799999999998 78999999999999999888899999999999999999999764 45667889999999
Q ss_pred hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647 249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328 (530)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a 328 (530)
+... . .+..+...+++|.|+.++.+.+++++..++|+|.+|+...... ....++++.|+.+| .+.++.++..|
T Consensus 347 s~~~--~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL-~~~d~~vr~~A 419 (780)
T 2z6g_A 347 SVCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL-GSDDINVVTCA 419 (780)
T ss_dssp HTST--T-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred hcCh--H-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHH-cCCCHHHHHHH
Confidence 9643 2 3445557899999999999999999999999999999754321 12246899999998 57889999999
Q ss_pred HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC-c-HhHHHHHHHHHHHHhcCCHH---HHHHHHhCCcHHHH
Q 009647 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-H-RVLKKEAAWVLSNIAAGSVE---HKQLIHSSEALALL 403 (530)
Q Consensus 329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~-~-~~i~~~A~~~Lsnl~~~~~~---~~~~li~~~~l~~L 403 (530)
+++|++|+.+++...+.+++ .|+++.|+.+|.+. + ..++..|+|+|+||+..+++ ....+.+.|++|.|
T Consensus 420 ~~aL~~L~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L 493 (780)
T 2z6g_A 420 AGILSNLTCNNYKNKMMVCQ------VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493 (780)
T ss_dssp HHHHHHHTSSCHHHHHHHHT------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHH------CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHH
Confidence 99999999988777777775 46999999999763 3 48999999999999875433 23467889999999
Q ss_pred HHHhcCCCh-hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC-------------------
Q 009647 404 LHLLSTSPF-DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD------------------- 463 (530)
Q Consensus 404 i~lL~~~~~-~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d------------------- 463 (530)
+.+|.+++. .++++|+|+|+|++.++ +....+.+.|+++.|+.+|...+
T Consensus 494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~-----------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~ 562 (780)
T 2z6g_A 494 VKLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 562 (780)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHHSSH-----------HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTT
T ss_pred HHHhcCCChHHHHHHHHHHHHHHhcCH-----------HHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcc
Confidence 999988775 99999999999998742 33478889999999999998654
Q ss_pred ---HHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647 464 ---IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 464 ---~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f 522 (530)
.+++..++.+|.++.. +...+..+.+.|+++.|..+..+++++++..|...|..+.
T Consensus 563 ~~~~~v~~~a~~aL~~La~---~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 563 VRMEEIVEACTGALHILAR---DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTT---SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHhc---ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3455667788888753 2234567889999999999999999999999988877664
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=2.7e-32 Score=273.77 Aligned_cols=265 Identities=19% Similarity=0.168 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcC----------CCCHHHHHHHHHHHHhhcCCCchhHHHHHh-cC
Q 009647 155 LLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGE----------KSSSPVAEQCAWALGNVAGEGEEFRNVLLS-QG 221 (530)
Q Consensus 155 ~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~----------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~g 221 (530)
+..|+|+|.|++.+ ++.++.++ |++|.|+.+|.. ..++.+++.|+|+|.|||.+++..|..+.. .|
T Consensus 49 ~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 49 ICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 35799999999987 67888887 899999999952 124789999999999999887778888765 45
Q ss_pred ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHHHHHHHhhcCCchhH
Q 009647 222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVYLSALSNVAT 300 (530)
Q Consensus 222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~ 300 (530)
+||+|+.+|.+++.++++.++|+|+||+.+.+ ...+..+...|++|.|+++| .+.+++++..++++|.+|+...+++.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC-HHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 69999999999999999999999999997532 23456666789999999975 56788999999999999998555555
Q ss_pred HHHH-hcCchHHHHHHHhcCCCc----cchhhhHHHHhhhhc---CCccccchhcccCCCcchhhHHHHHHHhccCcHhH
Q 009647 301 SLLV-KSGVLQLLVERLATSNSL----QLLIPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL 372 (530)
Q Consensus 301 ~~i~-~~g~l~~Lv~lL~~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i 372 (530)
..+. ..|+++.|+.+|. +.+. +++..|+++|.|++. ++++..+.++++ |++|.|+.+|.+++..+
T Consensus 207 ~~i~~~~Gai~~Lv~lL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~------g~i~~Lv~lL~~~~~~v 279 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN------NCLQTLLQHLKSHSLTI 279 (354)
T ss_dssp HHHHHSTTHHHHHHHHTT-CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT------THHHHHHHHTTCSCHHH
T ss_pred HHHHHhcCcHHHHHHHhc-cCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc------CCHHHHHHHHcCCChHH
Confidence 5665 7899999999995 4443 478899999999997 677778888864 69999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
+++|+|+|+|++.+++++.+.+++.|++|+|+++|.+++..++++|+|+|.|++.+
T Consensus 280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999988999999999999999999999999999999999999999975
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1.5e-28 Score=235.57 Aligned_cols=242 Identities=24% Similarity=0.354 Sum_probs=222.1
Q ss_pred CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647 178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 257 (530)
Q Consensus 178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~ 257 (530)
+.+|.|+.+|.+ ++++++..|+|+|++++.+.++.+..+.+.|+++.|+.++++++..++..++|+|.+|+.+. ...
T Consensus 2 ~~i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~ 78 (252)
T 4hxt_A 2 NDVEKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEA 78 (252)
T ss_dssp CHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHH
T ss_pred CcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHH
Confidence 568999999998 67999999999999999988889999999999999999999999999999999999999753 234
Q ss_pred hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647 258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 337 (530)
+..+...+++|.|+.++.+++++++..++|+|.+|+..+++....+.+.|+++.|+.+| .++++.++..++++|+|++.
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence 55566789999999999999999999999999999987888888999999999999999 57888999999999999999
Q ss_pred CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647 338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417 (530)
Q Consensus 338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e 417 (530)
+++...+.+++ .|+++.|+.++.++++.++..|+|+|+|++.+++...+.+.+.|+++.|++++.++++++++.
T Consensus 158 ~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 231 (252)
T 4hxt_A 158 GPDEAIKAIVD------AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKE 231 (252)
T ss_dssp SCHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHH
T ss_pred CCHHHHHHHHH------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHH
Confidence 88777677775 479999999999999999999999999999989899999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 009647 418 VAYVLGNLCVSP 429 (530)
Q Consensus 418 A~~aL~nl~~~~ 429 (530)
|+|+|+|++...
T Consensus 232 a~~~L~~l~~~~ 243 (252)
T 4hxt_A 232 AQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998754
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=8.3e-28 Score=230.36 Aligned_cols=240 Identities=28% Similarity=0.382 Sum_probs=217.1
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647 137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214 (530)
Q Consensus 137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 214 (530)
|.+|.|+.+|.+++ ++++..|+|+|.+++.+.++....++ |++|.|+.+|.+ +++++++.|+|+|+|++.++++.+
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHH
Confidence 67999999999877 77888999999999999887777777 799999999998 789999999999999999889999
Q ss_pred HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
..+.+.|+++.|+.++++++..++..++|+|++|+... + .....+...+++|.|++++.+++++++..++|+|++|+.
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-D-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-H-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-H-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999643 2 334455578999999999999999999999999999999
Q ss_pred CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647 295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 374 (530)
Q Consensus 295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~ 374 (530)
+++...+.+.+.|+++.|+.+| .++++.++..|+++|++++.+++...+.+.+ .|+++.|+.++.++++.+++
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~------~~~i~~L~~ll~~~~~~v~~ 230 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTSAIKAIVD------AGGVEVLQKLLTSTDSEVQK 230 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH------TTHHHHHHHGGGCSCHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHCCCcHHHHH
Confidence 8888888899999999999999 4788899999999999999988777777775 47999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 009647 375 EAAWVLSNIAAGS 387 (530)
Q Consensus 375 ~A~~~Lsnl~~~~ 387 (530)
.|+|+|+|++...
T Consensus 231 ~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 231 EAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998754
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=3.4e-28 Score=233.68 Aligned_cols=239 Identities=27% Similarity=0.419 Sum_probs=216.1
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
..+.++..|.+ ++++++..|+|+|.++...+++.+..+++.|+++.|+.+|+++++.++..++|+|.+++.+. + ...
T Consensus 13 ~~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~-~~~ 89 (252)
T 4db8_A 13 ELPQMTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-N-EQI 89 (252)
T ss_dssp SHHHHHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-H-HHH
T ss_pred hHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-H-HHH
Confidence 57899999988 78899999999998877667788899999999999999999999999999999999999753 2 334
Q ss_pred hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
..+...|++|.|+.+|.+++++++..++|+|++|+.+.+.....+.+.|+++.|+.+| .++++.++..|+++|+|++.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 5556789999999999999999999999999999987666658889999999999999 578889999999999999998
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 418 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA 418 (530)
++...+.+++ .|+++.|+.+|.++++.++..|+|+|+|++.+++...+.+++.|+++.|+.++.+++++++++|
T Consensus 169 ~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A 242 (252)
T 4db8_A 169 GNEQIQAVID------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242 (252)
T ss_dssp CHHHHHHHHH------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred ChHHHHHHHH------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence 8777777764 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 009647 419 AYVLGNLCV 427 (530)
Q Consensus 419 ~~aL~nl~~ 427 (530)
+|+|+|++.
T Consensus 243 ~~~L~~l~~ 251 (252)
T 4db8_A 243 QEALEKLQS 251 (252)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999999974
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=1.1e-27 Score=233.98 Aligned_cols=225 Identities=16% Similarity=0.179 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHH-HHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhH
Q 009647 280 ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE-RLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 358 (530)
Q Consensus 280 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~-lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l 358 (530)
+-+..|+..|.+++. +.++...+.+.|+++.|+. +| .++++.++..|+++|||++.+++...+.+++. |++
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL-~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~------g~l 126 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYL-EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL------GAL 126 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT------THH
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC------CCH
Confidence 567889999999998 4456667789999999999 98 58899999999999999999988888888854 699
Q ss_pred HHHHHHhcc-CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCch
Q 009647 359 AVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPK 437 (530)
Q Consensus 359 ~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~ 437 (530)
|.|+.+|.+ .+..+++.|+|+|+||+.+++...+.+++.|++|.|+.+|.++++.++++|+|+|+|++.+.
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-------- 198 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-------- 198 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--------
Confidence 999999986 47899999999999999999998999999999999999999999999999999999998742
Q ss_pred hHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCC---------cchhHHHHhchHHHHHHHhcCC-c
Q 009647 438 LIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNH---------EGTKLVEREDGIDAMERFQFHE-N 507 (530)
Q Consensus 438 ~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~---------~~~~~i~~~ggl~~L~~L~~~~-~ 507 (530)
.+++..+++.|++++|+.+|.++|++++..++.+|.+|+...+.. ....++++ .++.||.|+ +
T Consensus 199 --~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~~ 271 (296)
T 1xqr_A 199 --PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEEY 271 (296)
T ss_dssp --GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGGG
T ss_pred --hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHHH
Confidence 256789999999999999999999999999999999998753210 11223332 477788777 8
Q ss_pred HHHHHHHHHHHHhhcCCCCC
Q 009647 508 EDLRNMANGLVDKYFGEDYG 527 (530)
Q Consensus 508 ~~i~~~A~~il~~~f~~~~~ 527 (530)
+++|++|..|+++||+++++
T Consensus 272 ~e~~~~~~~il~~~f~~~~~ 291 (296)
T 1xqr_A 272 QEELEFCEKLLQTCFSSPAD 291 (296)
T ss_dssp HHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999987554
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1e-27 Score=230.36 Aligned_cols=238 Identities=25% Similarity=0.411 Sum_probs=212.1
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647 137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214 (530)
Q Consensus 137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 214 (530)
...+.++..|.+++ ++++..|+|+|.++.+...+....++ |++|.|+.+|.+ ++++++..|+|+|+|++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHH
Confidence 45889999999877 45788999999988876666666666 799999999998 679999999999999999889999
Q ss_pred HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
..+++.|+++.|+.+|+++++.+++.++|+|+||+.+. ......+...+++|.|++++.++++.++..++|+|++|+.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC--chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999763 2222455578999999999999999999999999999999
Q ss_pred CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647 295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 374 (530)
Q Consensus 295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~ 374 (530)
++++....+.+.|+++.|+.+| .++++.++..|+++|+|++.+++...+.+++ .|+++.|+.++.++++.+++
T Consensus 168 ~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~~v~~ 240 (252)
T 4db8_A 168 GGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKE------AGALEKLEQLQSHENEKIQK 240 (252)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHTTTTCSSSHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH------CCcHHHHHHHhCCCCHHHHH
Confidence 8888888899999999999999 4778899999999999999888777777775 47999999999999999999
Q ss_pred HHHHHHHHHhc
Q 009647 375 EAAWVLSNIAA 385 (530)
Q Consensus 375 ~A~~~Lsnl~~ 385 (530)
.|+|+|+||+.
T Consensus 241 ~A~~~L~~l~~ 251 (252)
T 4db8_A 241 EAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTC-
T ss_pred HHHHHHHHHhc
Confidence 99999999975
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-25 Score=238.51 Aligned_cols=320 Identities=13% Similarity=0.126 Sum_probs=248.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHH-HHH-HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh--------
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIE-TAL-KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE-------- 171 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~-~ii-~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~-------- 171 (530)
.+.+++...+..|+..|..+ +.. +.+. .+. +.|.++.|+.++.......+.+.++.+|.|++...+.
T Consensus 342 ~L~~~~~~~~~~AvEgLaYL-Sl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l 418 (778)
T 3opb_A 342 AISRRIVPKVEMSVEALAYL-SLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXX 418 (778)
T ss_dssp HTTTCCHHHHHHHHHHHHHH-TTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC--
T ss_pred HHhcCCccHHHHHHHHHHHH-hCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 44466777799999999987 544 3333 333 4778999999998533345778999999999963321
Q ss_pred ------------------------------hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHh
Q 009647 172 ------------------------------ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS 219 (530)
Q Consensus 172 ------------------------------~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~ 219 (530)
.+..++ |++|.|+.++.+ +++.++++|+|+|+||+.+ +++|..+++
T Consensus 419 ~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S-~s~~~re~A~~aL~nLS~d-~~~R~~lvq 496 (778)
T 3opb_A 419 XXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN-LSPNCKQQVVRIIYNITRS-KNFIPQLAQ 496 (778)
T ss_dssp ----------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG-SCHHHHHHHHHHHHHHHTS-GGGHHHHHH
T ss_pred hhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 123334 799999999988 7899999999999999985 899999999
Q ss_pred cCChhhhHhhcCCCChh---HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-CCHH------------H-H
Q 009647 220 QGALPPLARMMLPNKGS---TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-ADEE------------L-T 282 (530)
Q Consensus 220 ~g~i~~L~~lL~~~~~~---~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~-~d~~------------v-~ 282 (530)
+|++++|+.++.+.... .+.+|+++|++|+...+|...+..-...+++|+|+.+|.. ++.. + .
T Consensus 497 qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~ 576 (778)
T 3opb_A 497 QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDN 576 (778)
T ss_dssp TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHH
T ss_pred CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHH
Confidence 99999999999876433 8999999999999765443211100013899999999983 2211 2 6
Q ss_pred HHHHHHHHHhhcCCc----hhHHHHHhc-CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhh
Q 009647 283 TEVAWVVVYLSALSN----VATSLLVKS-GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV 357 (530)
Q Consensus 283 ~~a~~~L~~L~~~~~----~~~~~i~~~-g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~ 357 (530)
.+|+.+|.||+..++ +....++.. |+++.|.++|. +++..++..|+++++|++...+...+.+.+.+.....+.
T Consensus 577 feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~-s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~r 655 (778)
T 3opb_A 577 YEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML-DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRN 655 (778)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHH
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhcc
Confidence 799999999998652 335667775 99999999994 778889999999999999865533344543220011235
Q ss_pred HHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcC--CChhHHHHHHHHHHHhcC
Q 009647 358 IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLST--SPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 358 l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~--~~~~v~~eA~~aL~nl~~ 427 (530)
++.|+.++.+++..+|+.|+|+|+|++.+.+..++.+++. ++++.++.++++ ++.+++..++.++.|++.
T Consensus 656 L~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 656 FNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998888888999987 799999999988 899999999999999995
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=8.5e-24 Score=197.10 Aligned_cols=200 Identities=27% Similarity=0.391 Sum_probs=180.4
Q ss_pred hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCch
Q 009647 219 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 298 (530)
Q Consensus 219 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~ 298 (530)
..|..++|+.+++++++.++..|+|+|.+|+.+. ......+...+++|.|+.+|.+++++++..++|+|++|+.++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 4578899999999999999999999999999653 23344555789999999999999999999999999999987888
Q ss_pred hHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHH
Q 009647 299 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW 378 (530)
Q Consensus 299 ~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~ 378 (530)
....+++.|+++.|+.+| .++++.++..|+++|+|++.+++...+.+++ .|+++.|+.++.++++.++..|+|
T Consensus 88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~ 160 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVID------AGALPALVQLLSSPNEQILQEALW 160 (210)
T ss_dssp HHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH------cCcHHHHHHHHcCCCHHHHHHHHH
Confidence 889999999999999999 5788999999999999999988777777775 479999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 379 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 379 ~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
+|+|++.++++....+.+.|+++.|++++.++++++++.|+|+|.+++.
T Consensus 161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999888999999999999999999999999999999999999974
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=1e-23 Score=196.52 Aligned_cols=199 Identities=24% Similarity=0.333 Sum_probs=182.1
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST 342 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~ 342 (530)
..+..|.|..+|.++|++++..++|+|.+++.++++....+++.|+++.|+++| .++++.++..|+++|+|++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 458889999999999999999999999999988888889999999999999999 5778899999999999999888887
Q ss_pred cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647 343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422 (530)
Q Consensus 343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL 422 (530)
.+.+++ .|++|.|+.+|.++++.++..|+|+|+|++.++++..+.+++.|++|.|+++|.++++.++..|+|+|
T Consensus 89 ~~~i~~------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 89 IQAVID------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp HHHHHH------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHH------CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 777775 47999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647 423 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 478 (530)
Q Consensus 423 ~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il 478 (530)
+|++... .+....+.+.|+++.|+.++.+++++++..++.+|.++.
T Consensus 163 ~~l~~~~----------~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 163 SNIASGG----------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTSC----------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCC----------cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 9999752 256778889999999999999999999999999999885
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-22 Score=217.74 Aligned_cols=391 Identities=16% Similarity=0.166 Sum_probs=293.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHH
Q 009647 106 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIA 185 (530)
Q Consensus 106 ~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~ 185 (530)
.+.......+..|... +.+ ......+..+.+|.|.+.++. +.++..|+-+|..+.+........+....+.+.+
T Consensus 268 ~~~~~~~a~L~lLsaA-Ci~--~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~ 341 (778)
T 3opb_A 268 QDLQFTKELLRLLSSA-CID--ETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFIN 341 (778)
T ss_dssp CCHHHHHHHHHHHHHH-CCS--HHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH-hCC--cHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 4444445555555443 333 233667788899999999975 3456668888888876543322233357888999
Q ss_pred hhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc-CChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCC--------
Q 009647 186 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-GALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPK-------- 255 (530)
Q Consensus 186 lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~-------- 255 (530)
+|.+ ++.+-+..|++.|+.++.+ ++.|..+... |+++.|+.++++ .+..+...++.+|.|++......
T Consensus 342 ~L~~-~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~ 419 (778)
T 3opb_A 342 AISR-RIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXX 419 (778)
T ss_dssp HTTT-CCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC---
T ss_pred HHhc-CCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhh
Confidence 9987 5666699999999999984 6777777755 669999999995 78899999999999999854310
Q ss_pred ----------c------------------hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcC
Q 009647 256 ----------P------------------ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG 307 (530)
Q Consensus 256 ----------~------------------~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g 307 (530)
| .+..+...|++|.|+.++.++++.++..++|+|.+|+. +++....+++.|
T Consensus 420 ~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqG 498 (778)
T 3opb_A 420 XXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQG 498 (778)
T ss_dssp ---------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTT
T ss_pred hhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCC
Confidence 0 12345678999999999999999999999999999996 578888999999
Q ss_pred chHHHHHHHhcCCCcc---chhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-CcHh------------
Q 009647 308 VLQLLVERLATSNSLQ---LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRV------------ 371 (530)
Q Consensus 308 ~l~~Lv~lL~~~~~~~---v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~------------ 371 (530)
+++.|+.+|. +.... .+..|+++|+++....+... ++. |.. -.+++|+|+.+|.. +...
T Consensus 499 al~~LL~lL~-s~~~~~~~~k~~AA~ALArLlis~np~~--~f~-~~~-~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~ 573 (778)
T 3opb_A 499 AVKIILEYLA-NKQDIGEPIRILGCRALTRMLIFTNPGL--IFK-KYS-ALNAIPFLFELLPRSTPVDDNPLHNDEQIKL 573 (778)
T ss_dssp HHHHHHHHTT-CC---CCHHHHHHHHHHHHHHHTSCHHH--HSS-SSC-STTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred CHHHHHHHHh-cCCCcchHHHHHHHHHHHHHHhcCCHHH--HcC-CCc-cccchHHHHHHcCCCCCcccccccccccccH
Confidence 9999999995 44322 68899999999995544322 111 100 13799999999983 2111
Q ss_pred H-HHHHHHHHHHHhcCC----HHHHHHHHhC-CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHH-H
Q 009647 372 L-KKEAAWVLSNIAAGS----VEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHL-V 444 (530)
Q Consensus 372 i-~~~A~~~Lsnl~~~~----~~~~~~li~~-~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~-~ 444 (530)
+ +.+|+.+|.||+..+ ++..+.++.. |++|.|.++|.+++..+|+.|+|+|+|++.+++ .+ +
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-----------~i~~ 642 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-----------TIAA 642 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-----------GTGG
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-----------HHHH
Confidence 2 789999999999876 3446778886 999999999999999999999999999997531 11 1
Q ss_pred HHHh------cCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchh-HHHHhchHHHHHHHhcC--CcHHHHHHHH
Q 009647 445 SLVG------RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTK-LVEREDGIDAMERFQFH--ENEDLRNMAN 515 (530)
Q Consensus 445 ~l~~------~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~-~i~~~ggl~~L~~L~~~--~~~~i~~~A~ 515 (530)
.+.+ .+.++.|+.++..+|.+++..|.++|.++....+ ..+. +++..+|++.+..+... ++++++..+.
T Consensus 643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~--~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~ 720 (778)
T 3opb_A 643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP--LIAKELLTKKELIENAIQVFADQIDDIELRQRLL 720 (778)
T ss_dssp GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH--HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh--HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHH
Confidence 2222 1247899999999999999999999999854321 2334 44445899988777666 8999999999
Q ss_pred HHHHhhcC
Q 009647 516 GLVDKYFG 523 (530)
Q Consensus 516 ~il~~~f~ 523 (530)
.++...+.
T Consensus 721 ~~l~NL~~ 728 (778)
T 3opb_A 721 MLFFGLFE 728 (778)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999886
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.91 E-value=3.4e-24 Score=209.36 Aligned_cols=182 Identities=17% Similarity=0.193 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHH-hhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhh
Q 009647 153 EQLLEAAWCLTNIAAGKQEETKALL--PALPLLIA-HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 229 (530)
Q Consensus 153 ~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~-lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~l 229 (530)
+.+..|+..|.+++.... ....+. |++|.|+. +|.+ ++++++++|+|+|+|++.+++.+++.+++.|++|+|+.+
T Consensus 55 e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 345669999999997543 444443 89999999 9987 789999999999999999999999999999999999999
Q ss_pred cCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCc
Q 009647 230 MLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 308 (530)
Q Consensus 230 L~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~ 308 (530)
|++ ++..+++.|+|+|+||+++.. +..+.+...+++|.|+.+|.+++..++..++|+|+||+.++++.++.+++.|+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~--~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQE--AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCc--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 995 588999999999999998752 33444556899999999999999999999999999999988889999999999
Q ss_pred hHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647 309 LQLLVERLATSNSLQLLIPVLRSLGNLVAGD 339 (530)
Q Consensus 309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 339 (530)
++.|+.+| .+++..++.+|+++|+||+.+.
T Consensus 211 i~~Lv~LL-~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 211 VQQLVALV-RTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHH-TSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-cCCChhHHHHHHHHHHHHHhCC
Confidence 99999999 5889999999999999999874
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=182.52 Aligned_cols=196 Identities=16% Similarity=0.107 Sum_probs=166.0
Q ss_pred CHHHHHHHhcCCCC-hHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647 138 AIPVLVQCLAFGSP-DEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214 (530)
Q Consensus 138 ~v~~Lv~lL~~~~~-~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 214 (530)
.+|.||++|.++++ ..+|..|+++|.+++.++++.+..+. |+||.|+++|.+ +++++++.|+|+|.||+.+++++|
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence 58999999998774 26778899999999998888888887 899999999998 789999999999999999889999
Q ss_pred HHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc----------------cC
Q 009647 215 NVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK----------------RA 277 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~----------------~~ 277 (530)
..+.+.|+||+|+++|. +++.+++++++.+|+||+..+. .+..+. .+++|.|+.++. ..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~---~k~~i~-~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK---LKNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG---GHHHHH-HHHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh---hHHHHH-hccHHHHHHHHhccccCCcccccccccccc
Confidence 99999999999999998 5789999999999999996532 233332 468999988663 13
Q ss_pred CHHHHHHHHHHHHHhhcCCchhHHHHHhc-CchHHHHHHHhcC-----CCccchhhhHHHHhhhhcC
Q 009647 278 DEELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERLATS-----NSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 278 d~~v~~~a~~~L~~L~~~~~~~~~~i~~~-g~l~~Lv~lL~~~-----~~~~v~~~al~~L~nl~~~ 338 (530)
+++++.++.++|.||+..+++..+.+.+. |+++.|+.++... .+...+++|+.+|.|+++.
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 67899999999999998777888888875 7789999998631 2556788999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=172.60 Aligned_cols=197 Identities=14% Similarity=0.113 Sum_probs=166.8
Q ss_pred ChhhhHhhcCCCCh--hHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh
Q 009647 222 ALPPLARMMLPNKG--STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA 299 (530)
Q Consensus 222 ~i~~L~~lL~~~~~--~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~ 299 (530)
.+|+|+++|.++++ .++..++|++.+||.++ ...+..|...|++|.|+++|.+++++++..|+|+|.+|+.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~--~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK--SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC--HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC--cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 58999999999887 89999999999999753 234556667899999999999999999999999999999878889
Q ss_pred HHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc-------------
Q 009647 300 TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK------------- 366 (530)
Q Consensus 300 ~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~------------- 366 (530)
...+.+.|+++.|+++|..+++.+++..|..+|.|++..+... ..+++ +++|+|+.++.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~-------~~i~~Lv~ll~~p~sG~~~~~~~~ 158 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMIT-------EALLTLTENIIIPFSGWPEGDYPK 158 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHH-------HHHHHHCCCCCHHHHCCCGGGCCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHh-------ccHHHHHHHHhccccCCccccccc
Confidence 9999999999999999964678889999999999998765443 33432 57999988763
Q ss_pred ---cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcCC------ChhHHHHHHHHHHHhcCC
Q 009647 367 ---SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTS------PFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 367 ---~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~~------~~~v~~eA~~aL~nl~~~ 428 (530)
..+..++..|.++|.|++..+++..+.+.+. |+++.|+.+++.. +.+.++.|+.+|.||++.
T Consensus 159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1256899999999999999888899999886 6789999999652 457899999999999874
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.74 E-value=8.8e-17 Score=180.97 Aligned_cols=349 Identities=13% Similarity=0.104 Sum_probs=250.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh----
Q 009647 100 VAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA---- 175 (530)
Q Consensus 100 l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~---- 175 (530)
++.+.++++..+..++..+..+.+....... .+++|.|++.+.+++ +..+..|+.+|..++...+.....
T Consensus 96 l~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 96 LNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence 3456688889999999999998765422111 467899999998765 455556899999998654333221
Q ss_pred --hcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 176 --LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 176 --i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
+-..+|.|++++++ +++.+|..|+++|+++....+..-.. .-..+++.+..++.+++..++..++++|..++...
T Consensus 170 ~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~- 246 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR- 246 (852)
T ss_dssp SCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC-
Confidence 11478888888887 78999999999999988643321100 11246788888888999999999999999999753
Q ss_pred CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHh---cCchHHHHHHHh----------cC-
Q 009647 254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK---SGVLQLLVERLA----------TS- 319 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~---~g~l~~Lv~lL~----------~~- 319 (530)
+...... ..++++.++.++.+.+++++..+++++..+++... ... .+. ..+++.++..+. ..
T Consensus 247 ~~~~~~~--l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 247 MDRLLPH--MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HHHHGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred HHHHHHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 2221122 24688888999999999999999999999986431 111 111 134555555541 12
Q ss_pred ----------CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH
Q 009647 320 ----------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE 389 (530)
Q Consensus 320 ----------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~ 389 (530)
.+..++..|..+|+.++...+. .++ ..++|.+..++.+.++.+|..|+|++++++.+..+
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-------~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-------PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGG---GGH-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccH---HHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence 2335677889999988865432 233 25888999999999999999999999999998866
Q ss_pred HHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHH
Q 009647 390 HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARL 469 (530)
Q Consensus 390 ~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~ 469 (530)
.....+ .+++|.++..+.++++.||..|+|+|++++.... .....-.-.++++.|+..|.++++.++..
T Consensus 393 ~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~----------~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 393 GMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV----------SQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH----------HSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----------cchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 554433 3589999999999999999999999999975210 00000011356788999998899999999
Q ss_pred HHHHHHHHHccCC
Q 009647 470 GLQFMELVLRGMP 482 (530)
Q Consensus 470 ~L~~L~~il~~~~ 482 (530)
++.+|.+++....
T Consensus 462 a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 462 ACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987543
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.72 E-value=3.5e-16 Score=152.22 Aligned_cols=259 Identities=14% Similarity=0.085 Sum_probs=201.5
Q ss_pred HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch
Q 009647 133 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 212 (530)
Q Consensus 133 ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~ 212 (530)
..+.+.++.|+..|.+++ +.++..|+++|.++.. + .+++.|+.+|.+ +++.++..|+|+|+++......
T Consensus 19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~-------~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q-------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H-------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c-------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhcccccc
Confidence 345778999999998655 6777889999999973 2 267899999987 7899999999999999753322
Q ss_pred hHHHHHhcCChhhhH-hhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHH
Q 009647 213 FRNVLLSQGALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVY 291 (530)
Q Consensus 213 ~r~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 291 (530)
... +++.|. .+++++++.++..++|+|++++... +. . ...++|.|..++.++++.++..++++|++
T Consensus 88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-~~----~--~~~~~~~L~~~l~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKN-PI----Y--SPKIVEQSQITAFDKSTNVRRATAFAISV 154 (280)
T ss_dssp HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-GG----G--HHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-Cc----c--cHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 111 233343 2456789999999999999998542 11 1 24678999999999999999999999998
Q ss_pred hhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh
Q 009647 292 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 371 (530)
Q Consensus 292 L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~ 371 (530)
+.. .++++.|+.+| .++++.++..|+++|+++.... ..+++.|..++.++++.
T Consensus 155 ~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~---------------~~~~~~L~~~l~d~~~~ 207 (280)
T 1oyz_A 155 IND-----------KATIPLLINLL-KDPNGDVRNWAAFAININKYDN---------------SDIRDCFVEMLQDKNEE 207 (280)
T ss_dssp C--------------CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCC---------------HHHHHHHHHHTTCSCHH
T ss_pred cCC-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHhhccCc---------------HHHHHHHHHHhcCCCHH
Confidence 864 24789999988 5788899999999999984221 25889999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC
Q 009647 372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 451 (530)
Q Consensus 372 i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~ 451 (530)
+|..|+++|+++. + ...++.|+.++.+++ ++..|+++|+.+.. ..+
T Consensus 208 vR~~A~~aL~~~~--~---------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------------~~~ 253 (280)
T 1oyz_A 208 VRIEAIIGLSYRK--D---------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------------KTL 253 (280)
T ss_dssp HHHHHHHHHHHTT--C---------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------------GGG
T ss_pred HHHHHHHHHHHhC--C---------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------------hhh
Confidence 9999999999985 2 247899999998754 89999999999842 135
Q ss_pred hHHHHhhhcc-CCHHHHHHHHHHHHH
Q 009647 452 LSGFIDLVRS-ADIEAARLGLQFMEL 476 (530)
Q Consensus 452 i~~L~~lL~~-~d~~i~~~~L~~L~~ 476 (530)
++.|..++.. ++++++..+++.|.+
T Consensus 254 ~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 254 LPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred hHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 6888888865 667788777776653
No 41
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.72 E-value=1.2e-15 Score=164.33 Aligned_cols=372 Identities=15% Similarity=0.209 Sum_probs=247.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 172 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~ 172 (530)
+.+|.+.+ .+++...+..++..+..+...+.+. +.+.+.+++++.+++ ..+++-+..++.+++...++.
T Consensus 15 ~~~i~~~L---~~~~~~~k~~~~~kli~~~~~G~d~-------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~e~ 83 (591)
T 2vgl_B 15 IFELKAEL---NNEKKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCMQTDN-LELKKLVYLYLMNYAKSQPDM 83 (591)
T ss_dssp HHHHHHHT---TSSCHHHHHHHHHHHHHHHHTTCCC-------GGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHH---cCCCHHHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCchH
Confidence 45565555 4889999999998888877666543 236777888887655 666666788888887654433
Q ss_pred HHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647 173 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 252 (530)
Q Consensus 173 ~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 252 (530)
+.-+++.|.+-|++ +++.++..|+.+|+++.. ++.... .++.+.+++.++++.+++.|++++.++++..
T Consensus 84 ---~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~~--~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~ 152 (591)
T 2vgl_B 84 ---AIMAVNSFVKDCED-PNPLIRALAVRTMGCIRV--DKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN 152 (591)
T ss_dssp ---HHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCCS--GGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS
T ss_pred ---HHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCh--HHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC
Confidence 33467888888887 899999999999999973 444333 3578999999999999999999999999743
Q ss_pred CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh---------HHHHHh------------------
Q 009647 253 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA---------TSLLVK------------------ 305 (530)
Q Consensus 253 ~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~---------~~~i~~------------------ 305 (530)
|. .+...+++|.+..+|.++|+.++..|+++|..++..+++. ...++.
T Consensus 153 -p~----~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 153 -AQ----MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLS 227 (591)
T ss_dssp -CC----CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred -hh----hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 43 2223578999999999999999999999999999754322 211111
Q ss_pred ----------cCchHHHHHHHhcCCCccchhhhHHHHhhhhcC---CccccchhcccCCCcchhhHHHHHHHhccCcHhH
Q 009647 306 ----------SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG---DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL 372 (530)
Q Consensus 306 ----------~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~---~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i 372 (530)
..+++.+..+| .+.++.++..|++++..+... +++..+.+. ..+.+.|+.++. +++.+
T Consensus 228 ~l~~~~~~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-------~~~~~~L~~L~~-~d~~v 298 (591)
T 2vgl_B 228 NYNPKDDREAQSICERVTPRL-SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-------KKLAPPLVTLLS-GEPEV 298 (591)
T ss_dssp TSCCCSHHHHHHHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-------HHTHHHHHHHTT-SCHHH
T ss_pred HhCCCChHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-------HHHHHHHHHHhc-CCccH
Confidence 11233333333 466778888899999888642 222222222 135556665543 55667
Q ss_pred HHHHHHHHHHHhcCCHH-----------------HH-----HHHH---hC----CcHHHHHHHhcCCChhHHHHHHHHHH
Q 009647 373 KKEAAWVLSNIAAGSVE-----------------HK-----QLIH---SS----EALALLLHLLSTSPFDIKKEVAYVLG 423 (530)
Q Consensus 373 ~~~A~~~Lsnl~~~~~~-----------------~~-----~~li---~~----~~l~~Li~lL~~~~~~v~~eA~~aL~ 423 (530)
|..|+.+|+.++...++ .+ ..+. +. .+++.|...+.+.+.+++++++++|+
T Consensus 299 r~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~ 378 (591)
T 2vgl_B 299 QYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIG 378 (591)
T ss_dssp HHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77777766666532110 00 0111 11 24566777778889999999999999
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHH-H
Q 009647 424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMER-F 502 (530)
Q Consensus 424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~-L 502 (530)
+++..- | .. ...+++.|+++|...+..+...++.++..|++..++. ...++..|.. +
T Consensus 379 ~la~~~------~----~~-----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-------~~~~v~~L~~~l 436 (591)
T 2vgl_B 379 RCAIKV------E----QS-----AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-------YESIIATLCENL 436 (591)
T ss_dssp HHHTTC------H----HH-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-------CCTTHHHHHHTT
T ss_pred HHHHhC------h----hH-----HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-------HHHHHHHHHHHH
Confidence 998641 1 11 1336788999999888888888888888888765431 1122333322 2
Q ss_pred hcCCcHHHHHHHHHHHHhhc
Q 009647 503 QFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 503 ~~~~~~~i~~~A~~il~~~f 522 (530)
.....++++..+.++|-+|-
T Consensus 437 ~~~~~~~~~~~~~wilGey~ 456 (591)
T 2vgl_B 437 DSLDEPDARAAMIWIVGEYA 456 (591)
T ss_dssp TTCCSHHHHHHHHHHHHTTC
T ss_pred HhccCHHHHHHHHHHHHccc
Confidence 33445566666666666653
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.71 E-value=3.2e-16 Score=176.39 Aligned_cols=396 Identities=13% Similarity=0.087 Sum_probs=273.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009647 95 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK 174 (530)
Q Consensus 95 ~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~ 174 (530)
-+..++..+.+.++..|..|+..|++.+...= ..+..-.+..+-+.+++.|..++ +.++..++.+++.++..... .
T Consensus 49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w-~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~--~ 124 (852)
T 4fdd_A 49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF-QNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGEL--Q 124 (852)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG-GGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTT--T
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCc--c
Confidence 34444544457889999999999999876421 11122233455667777777544 66777899999999965421 1
Q ss_pred hhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHH----hcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647 175 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL----SQGALPPLARMMLPNKGSTVRTAAWALSNLIK 250 (530)
Q Consensus 175 ~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~----~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 250 (530)
..-+.+|.|+..+.+ +++.+++.++++|+.++.+.+...+.-. -..+++.++.++++++..++..|+++|.+++.
T Consensus 125 ~wp~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp TCTTHHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 222578999999987 7899999999999999975433211100 12367888888888999999999999999886
Q ss_pred CCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHH
Q 009647 251 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 330 (530)
Q Consensus 251 ~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~ 330 (530)
.. +...... ...+++.+..++.+++++++..++++|..++...++.....+. ++++.++..+ .+.++.++..|+.
T Consensus 204 ~~-~~~~~~~--~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e 278 (852)
T 4fdd_A 204 SR-TQALMLH--IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACE 278 (852)
T ss_dssp TT-CHHHHTS--HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHH
T ss_pred cc-cHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHH
Confidence 53 2211111 2478899999999999999999999999999855544322222 4677777777 4678889999999
Q ss_pred HHhhhhcCCccccchhcccCCCcchhhHHHHHHHh-----------cc-----------CcHhHHHHHHHHHHHHhcCCH
Q 009647 331 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL-----------KS-----------EHRVLKKEAAWVLSNIAAGSV 388 (530)
Q Consensus 331 ~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL-----------~~-----------~~~~i~~~A~~~Lsnl~~~~~ 388 (530)
++..++..... ...+.. .-..++|.++..+ .+ .+..+|+.|+.++..++...+
T Consensus 279 ~l~~l~~~~~~--~~~~~~---~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~ 353 (852)
T 4fdd_A 279 FWLTLAEQPIC--KDVLVR---HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR 353 (852)
T ss_dssp HHHHHTTSTTH--HHHHTT---THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHhcchhH--HHHHHH---HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc
Confidence 99998854321 111110 0135778888777 22 233679999999999876432
Q ss_pred HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHH
Q 009647 389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 468 (530)
Q Consensus 389 ~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~ 468 (530)
+. ++. .++|.+...+.+++..+|..|+++|++++.+. .+.... .-.++++.++.++.++++.++.
T Consensus 354 ~~---~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~----------~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~ 418 (852)
T 4fdd_A 354 DE---LLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGC----------MQGMIP-YLPELIPHLIQCLSDKKALVRS 418 (852)
T ss_dssp GG---GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT----------HHHHGG-GHHHHHHHHHHHTTCSSHHHHH
T ss_pred HH---HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc----------hHHHHH-HHHHHHHHHHHHcCCCCHHHHH
Confidence 21 222 36788888889999999999999999998743 122221 2246789999999999999999
Q ss_pred HHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647 469 LGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 469 ~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f 522 (530)
.+.++|.++....+.......+ .+.++.|.....++++.+++.|...+..+.
T Consensus 419 ~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 419 ITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp HHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9999999887532111111111 244566666666788999999988887664
No 43
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.71 E-value=1.8e-15 Score=162.61 Aligned_cols=371 Identities=10% Similarity=0.084 Sum_probs=260.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHH
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLL 183 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L 183 (530)
+++...+..|+.++..+..... .......++|.+..++..++ ..++..|+.+|..++..... .... ..+|.+
T Consensus 214 d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l 286 (588)
T 1b3u_A 214 DEQDSVRLLAVEACVNIAQLLP----QEDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP--EITKTDLVPAF 286 (588)
T ss_dssp CSCHHHHTTHHHHHHHHHHHSC----HHHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--ccchhHHHHHH
Confidence 4445555555555544432211 01122346677777765433 45556677888777743111 1112 468889
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647 184 IAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 262 (530)
Q Consensus 184 ~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~ 262 (530)
+.++.+ +++.++..|+++|+.++.... ..+.......++|.+..++++++..++..++|+|..++..-. .+..
T Consensus 287 ~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~----~~~~- 360 (588)
T 1b3u_A 287 QNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG----KDNT- 360 (588)
T ss_dssp HHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC----HHHH-
T ss_pred HHHhCC-CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh----HhHH-
Confidence 999987 789999999999999986432 222223344577888899999999999999999999985321 1111
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST 342 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~ 342 (530)
...++|.+..++.+++++++..++.+|..+....... .....+++.+..++ .+.+..++..++.+++.++..-...
T Consensus 361 ~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHcCHH
Confidence 3468899999999999999999999999888632211 12235678888877 4678889999999999987532211
Q ss_pred cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647 343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422 (530)
Q Consensus 343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL 422 (530)
.. ...++|.+..++.+.+..+|..|+.+++.++...... .....++|.|..++.+.++.+|..|++++
T Consensus 437 ---~~------~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l 504 (588)
T 1b3u_A 437 ---FF------DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCI 504 (588)
T ss_dssp ---GC------CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred ---HH------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 11 2358899999999999999999999999997642111 11234788999988999999999999999
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHH
Q 009647 423 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF 502 (530)
Q Consensus 423 ~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L 502 (530)
+.++... -....-..+++.|..++.++++.++..++++|..+....+. . +.....++.|..+
T Consensus 505 ~~l~~~~-------------~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----~-~~~~~~~p~l~~l 566 (588)
T 1b3u_A 505 NVLSEVC-------------GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN----S-TLQSEVKPILEKL 566 (588)
T ss_dssp HHHHHHH-------------HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH----H-HHHHHHHHHHHHH
T ss_pred HHHHHhc-------------CHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch----h-hhHHHHHHHHHHH
Confidence 9997421 01122346889999999999999999999999999865421 1 2224556778888
Q ss_pred hcCCcHHHHHHHHHHHHhhc
Q 009647 503 QFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 503 ~~~~~~~i~~~A~~il~~~f 522 (530)
..+.+.+++..|...+...-
T Consensus 567 ~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 567 TQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp TTCSSHHHHHHHHHHHHHTT
T ss_pred cCCCchhHHHHHHHHHHHhh
Confidence 89999999999999887653
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.70 E-value=2.8e-14 Score=148.93 Aligned_cols=321 Identities=15% Similarity=0.198 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCC
Q 009647 91 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-SPDEQLLEAAWCLTNIAAGK 169 (530)
Q Consensus 91 ~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~eA~~~L~nia~~~ 169 (530)
.+++.|...+. ++.-.+.+..|+..|+.+ ++. .+ ..+.++++|.|+..|+.+ ++.++...+..+|.++.+.+
T Consensus 21 etI~~L~~Rl~--~~tl~eDRR~Av~~Lk~~-sk~-y~---~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 21 ETIQKLCDRVA--SSTLLDDRRNAVRALKSL-SKK-YR---LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHH--HCCSHHHHHHHHHHHHHT-TTT-TT---THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHh--hccchhHHHHHHHHHHHH-HHH-hH---HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence 45777777776 477899999999999998 432 22 356688999999999865 34566667888998877654
Q ss_pred hh-----------------hHHhhc---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch-hHHHHHhc-CChhhhH
Q 009647 170 QE-----------------ETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQ-GALPPLA 227 (530)
Q Consensus 170 ~~-----------------~~~~i~---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~-g~i~~L~ 227 (530)
.+ .++.++ +.++.|+.+|.+ ++..+|..++.+|..++...++ .++.++.. ++++.|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 32 223333 489999999987 7899999999999999987776 88888855 9999999
Q ss_pred hhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH----HHHHHHHHHHHHhhcCCchhHHHH
Q 009647 228 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE----ELTTEVAWVVVYLSALSNVATSLL 303 (530)
Q Consensus 228 ~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~----~v~~~a~~~L~~L~~~~~~~~~~i 303 (530)
.+|.++...++..++-.|.+|+++. ....+++.-.|+++.|+.++..+.. .+..+|+.+|.+|.+.+..+...+
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n--~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~F 250 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSN--GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFF 250 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCC--HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999899999999999999874 3445566667999999999986544 789999999999999888888889
Q ss_pred HhcCchHHHHHHHhcCCCcc------chhh---hHHHHhhhhcCCcc-----ccc-hhcccCCCcchhhHHHHHHHhccC
Q 009647 304 VKSGVLQLLVERLATSNSLQ------LLIP---VLRSLGNLVAGDSS-----TIS-DVLVPGHGITDQVIAVLVKCLKSE 368 (530)
Q Consensus 304 ~~~g~l~~Lv~lL~~~~~~~------v~~~---al~~L~nl~~~~~~-----~~~-~~i~~g~~~~~~~l~~L~~lL~~~ 368 (530)
.+.|.+++|..+|. .+... ...+ ++.++.-++..+.. .-| .+. +.|+++.|++++...
T Consensus 251 rEt~~i~~L~~LL~-~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~------~~g~l~~Ll~ll~~~ 323 (651)
T 3grl_A 251 KEGSYIQRMKPWFE-VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF------QCGLLQQLCTILMAT 323 (651)
T ss_dssp HHTTCGGGGGGGGC-CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH------HTTHHHHHHHHHTCS
T ss_pred HHcCCHHHHHHHhC-CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH------HCCCHHHHHHHHccC
Confidence 99999999999884 33222 1223 56666666665332 112 333 457999999998765
Q ss_pred --cHhHHHHHHHHHHHHhcCCHHHHHHHHhCC-----cHHHHHH----Hhc-CCChhHHHHHHHHHHHhcCC
Q 009647 369 --HRVLKKEAAWVLSNIAAGSVEHKQLIHSSE-----ALALLLH----LLS-TSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 369 --~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~-----~l~~Li~----lL~-~~~~~v~~eA~~aL~nl~~~ 428 (530)
...++.+|+.+++.++.+++.....+.+.. ..|.++. ++. ...+++|.+|+.++..+..+
T Consensus 324 ~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 324 GVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 468999999999999999977766666543 2234444 343 35689999999999998874
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.70 E-value=3.1e-15 Score=160.65 Aligned_cols=375 Identities=13% Similarity=0.118 Sum_probs=273.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCc
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PAL 180 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v 180 (530)
.+.++++.++..|+..+..+...... ......++|.+..++..++ +.++..|+.+|..++...+.. ... ..+
T Consensus 172 l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~~~ 244 (588)
T 1b3u_A 172 LCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--DLEALVM 244 (588)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--HHHHHTH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence 34678999999999999988654321 2334678899999987654 566666999999988543321 122 378
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL 260 (530)
Q Consensus 181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 260 (530)
|.+..++.+ +++.+|..|+.+|+.++.... .......+++.++.+++++++.++..++++|..++....+.. ...
T Consensus 245 ~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~ 319 (588)
T 1b3u_A 245 PTLRQAAED-KSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC-REN 319 (588)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT-HHH
T ss_pred HHHHHHccC-CCHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh-hhh
Confidence 888888877 789999999999999985211 112334578999999999999999999999999997643221 110
Q ss_pred HHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647 261 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 340 (530)
Q Consensus 261 v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 340 (530)
.....++|.+..++.++++.++..++++|..++..-... .....+++.+..++ .+.++.++..++.+++.+.....
T Consensus 320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhcC
Confidence 114588999999999999999999999999998521111 11234778888888 46778899999999999875432
Q ss_pred cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647 341 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA 419 (530)
Q Consensus 341 ~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~ 419 (530)
.. ... ..++|.|..++.+.+..+|..++.+++.++.. ..+ .+...++|.+...|.+++..+|..|+
T Consensus 396 ~~--~~~-------~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~ 462 (588)
T 1b3u_A 396 IR--QLS-------QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAAT 462 (588)
T ss_dssp HH--HHH-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HH--HHH-------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 11 111 35889999999999999999999999998742 111 11123678899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHH
Q 009647 420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM 499 (530)
Q Consensus 420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L 499 (530)
.+++.++... | .+ .....+++.|..++..+++.++..+++++..+....+. .......++.|
T Consensus 463 ~~l~~l~~~~----~-----~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-----~~~~~~~~~~l 524 (588)
T 1b3u_A 463 SNLKKLVEKF----G-----KE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-----DITTKHMLPTV 524 (588)
T ss_dssp HHHHHHHHHH----C-----HH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHTHHHH
T ss_pred HHHHHHHHHh----C-----ch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHH
Confidence 9999997531 1 01 12345788888988888999999999999988754221 11123456677
Q ss_pred HHHhcCCcHHHHHHHHHHHHhhcC
Q 009647 500 ERFQFHENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 500 ~~L~~~~~~~i~~~A~~il~~~f~ 523 (530)
..+..+++++|+..+...+..++.
T Consensus 525 ~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 525 LRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HhhCCCCCchHHHHHHHHHHHHHH
Confidence 777888899999998888877763
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.67 E-value=9e-15 Score=142.21 Aligned_cols=254 Identities=11% Similarity=0.036 Sum_probs=195.0
Q ss_pred CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647 178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 257 (530)
Q Consensus 178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~ 257 (530)
.+++.|+..|.+ +++.++..|+|+|+++.. .++++.|+.++.++++.++..++|+|..+.... ..
T Consensus 23 ~~i~~L~~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~~- 87 (280)
T 1oyz_A 23 LNDDELFRLLDD-HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KC- 87 (280)
T ss_dssp SCHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TT-
T ss_pred hhHHHHHHHHHc-CCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--cc-
Confidence 378999999987 789999999999999873 235888999999999999999999999986421 11
Q ss_pred hhHHHhhchHHHHH-HHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647 258 TELIKVDGLLDAIL-RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 258 ~~~v~~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~ 336 (530)
...+++.|. .++.++++.++..++|+|+++....+.. ...+++.|+.+| .++++.++..|+++|+++.
T Consensus 88 -----~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 -----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp -----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred -----chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence 123556665 3567889999999999999998533222 124578888888 5888999999999999875
Q ss_pred cCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647 337 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 416 (530)
Q Consensus 337 ~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~ 416 (530)
. ..+++.|+.++.++++.+|..|+|+|+++....+. +++.|+.++.++++.+|.
T Consensus 157 ~-----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~ 210 (280)
T 1oyz_A 157 D-----------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRI 210 (280)
T ss_dssp -------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHH
T ss_pred C-----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHH
Confidence 2 13789999999999999999999999999544432 578899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchH
Q 009647 417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGI 496 (530)
Q Consensus 417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl 496 (530)
.|+++|+++.. ..+++.|+.+|.+++ +...+.++|..+- . ...+
T Consensus 211 ~A~~aL~~~~~---------------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~----~---------~~~~ 254 (280)
T 1oyz_A 211 EAIIGLSYRKD---------------------KRVLSVLCDELKKNT--VYDDIIEAAGELG----D---------KTLL 254 (280)
T ss_dssp HHHHHHHHTTC---------------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC----C---------GGGH
T ss_pred HHHHHHHHhCC---------------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC----c---------hhhh
Confidence 99999999842 135678888887655 6677778877761 1 1345
Q ss_pred HHHHHH-hcCCcHHHHHHHHHHHH
Q 009647 497 DAMERF-QFHENEDLRNMANGLVD 519 (530)
Q Consensus 497 ~~L~~L-~~~~~~~i~~~A~~il~ 519 (530)
+.|..+ ..++++++...+...++
T Consensus 255 ~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 255 PVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHhh
Confidence 666554 45667777777766554
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.59 E-value=1e-12 Score=137.33 Aligned_cols=414 Identities=14% Similarity=0.126 Sum_probs=272.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCc----------------HHHHHH-cCCHHHHHHHhcCCCChHHH
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPP----------------IETALK-AGAIPVLVQCLAFGSPDEQL 155 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~----------------~~~ii~-~g~v~~Lv~lL~~~~~~~~~ 155 (530)
+..+...++. ...|.+....++..|..+++....+. .+.+++ .+.|+.|+.+|+.++ ...+
T Consensus 62 l~~li~~L~~-d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~vR 139 (651)
T 3grl_A 62 MEHLIHVLQT-DRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHVR 139 (651)
T ss_dssp HHHHHHHHHS-CTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHHH
T ss_pred HHHHHHHHhc-ccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHHH
Confidence 4455555542 23678888888899988877554321 134443 788999999998765 5677
Q ss_pred HHHHHHHHHHhcCChhhHHhh-c---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC
Q 009647 156 LEAAWCLTNIAAGKQEETKAL-L---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 231 (530)
Q Consensus 156 ~eA~~~L~nia~~~~~~~~~i-~---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~ 231 (530)
+.++.+|..++.+.++..+.. + +++|.|+.+|.+ +.+.+|..++-.|.+++.++++.++.+.-.|+++.|+.++.
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 889999999998888754444 4 599999999998 68999999999999999999999999999999999999998
Q ss_pred CCC----hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHH------HHHH---HHHHHHHhhcCC--
Q 009647 232 PNK----GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEE------LTTE---VAWVVVYLSALS-- 296 (530)
Q Consensus 232 ~~~----~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~------v~~~---a~~~L~~L~~~~-- 296 (530)
... ..+..-|+-++.||.+.. + ....++.+.+++|.|..++..+++. ...+ +..++.-|...+
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N-~-sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~ 296 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNN-N-SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP 296 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTC-H-HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSC
T ss_pred hcCCCccchhHHHHHHHHHHHHhcC-H-HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 643 478899999999999874 2 2345666889999999999754322 3333 444555555432
Q ss_pred ----chhHHHHHhcCchHHHHHHHhcCC-CccchhhhHHHHhhhhcCCccccchhccc--CCC-cchhhHHHHHHHhccC
Q 009647 297 ----NVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSSTISDVLVP--GHG-ITDQVIAVLVKCLKSE 368 (530)
Q Consensus 297 ----~~~~~~i~~~g~l~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~~~~~~~~~i~~--g~~-~~~~~l~~L~~lL~~~ 368 (530)
..+...+.+.|+++.|++++..+. ...++..|+.+++.++.++......+... +.. -..-++..|+.++.+.
T Consensus 297 ~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~ 376 (651)
T 3grl_A 297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNER 376 (651)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTT
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccc
Confidence 234567788999999999986332 45678899999999999886543332211 000 0122444455555544
Q ss_pred -cHhHHHHHHHHHHHHhcCCHHHHHHHHhC----------CcH---HHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 009647 369 -HRVLKKEAAWVLSNIAAGSVEHKQLIHSS----------EAL---ALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG 434 (530)
Q Consensus 369 -~~~i~~~A~~~Lsnl~~~~~~~~~~li~~----------~~l---~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~ 434 (530)
...+|.+|+.++..+..++++....++.. +.+ ..|...+-+.|+-----|+.++.++..+.
T Consensus 377 ~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n----- 451 (651)
T 3grl_A 377 QPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQEN----- 451 (651)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTC-----
T ss_pred ccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCC-----
Confidence 46899999999999999887554445432 111 12444555566544445888888887642
Q ss_pred CchhHHHHHHHHHh-----------cCChHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcch-hHHHHhchHHHHHH
Q 009647 435 KPKLIQEHLVSLVG-----------RGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEGT-KLVEREDGIDAMER 501 (530)
Q Consensus 435 ~~~~~~~~~~~l~~-----------~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~~-~~i~~~ggl~~L~~ 501 (530)
| +....+.. .-.++.+..+|.. .|+++...-|..|..-|..+++ .. ..+.+...++.|..
T Consensus 452 -~----~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~--AV~dFL~~~s~l~~L~~ 524 (651)
T 3grl_A 452 -A----TQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI--AVTHFLHNSANVPFLTG 524 (651)
T ss_dssp -H----HHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH--HHHHHHHSTTHHHHHHH
T ss_pred -H----HHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH--HHHHHHcCCchHHHHHH
Confidence 1 12122221 1124455555543 5666655555555555543332 23 34444456776654
Q ss_pred Hh-c-CC--cHHHHHHHHHHHHhhcC
Q 009647 502 FQ-F-HE--NEDLRNMANGLVDKYFG 523 (530)
Q Consensus 502 L~-~-~~--~~~i~~~A~~il~~~f~ 523 (530)
.. + ++ +.-|+-.+.-+|--.|.
T Consensus 525 ~i~~~~~~~~~lvqGL~a~LLGi~ye 550 (651)
T 3grl_A 525 QIAENLGEEEQLVQGLCALLLGISIY 550 (651)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcchHHHHHHHHHHHHHHhh
Confidence 33 3 23 34567777666654433
No 48
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.59 E-value=4.2e-14 Score=158.95 Aligned_cols=386 Identities=14% Similarity=0.186 Sum_probs=255.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHcCCC---------------CCcH-HHHHHcCCHHHHHHHhcCC------CChHHHHHH
Q 009647 101 AYHGKGAMQKRVNALRELRRLLSRFE---------------FPPI-ETALKAGAIPVLVQCLAFG------SPDEQLLEA 158 (530)
Q Consensus 101 ~~l~s~d~~~~~~a~~~lr~lls~~~---------------~~~~-~~ii~~g~v~~Lv~lL~~~------~~~~~~~eA 158 (530)
..+.+.+...+..|+..+..+..... .+.. ...+ ..++|.++..|... +....+..|
T Consensus 273 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 35567888899999988887754321 1111 1122 55788999888742 223566678
Q ss_pred HHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCCChh
Q 009647 159 AWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNKGS 236 (530)
Q Consensus 159 ~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~~~~ 236 (530)
+.+|..++.... ..++ ..+|.+...+.+ +++.+++.|+++++.++.... ..-...+ ..+++.|+..+.++++.
T Consensus 352 ~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 352 GACLQLFAQNCG---NHILEPVLEFVEQNITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHHHG---GGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHcc---HhHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHH
Confidence 999999985322 2223 467777788876 689999999999999996532 2111222 24788899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCc-hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc----hhHHHHHhcCchHH
Q 009647 237 TVRTAAWALSNLIKGPDPKP-ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN----VATSLLVKSGVLQL 311 (530)
Q Consensus 237 ~~~~a~~~L~nL~~~~~~~~-~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~----~~~~~i~~~g~l~~ 311 (530)
++..++|+++.++....+.. .... ...++|.++..+.++ +.++..++|+|.+++.... ......+ ..+++.
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~ 502 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDG 502 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHH
Confidence 99999999999986421100 0112 347889999888765 8999999999999986311 1111111 345777
Q ss_pred HHHHHhcC-CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC---------------cHhHHHH
Q 009647 312 LVERLATS-NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE---------------HRVLKKE 375 (530)
Q Consensus 312 Lv~lL~~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~---------------~~~i~~~ 375 (530)
|+..+... .++.++..++.+++.++..........+. .++|.++..+... ...++..
T Consensus 503 L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-------~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 503 LIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-------SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-------HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-------HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 88877422 23678889999999999776554444432 5777777776531 3468889
Q ss_pred HHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCCh-hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHH
Q 009647 376 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF-DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG 454 (530)
Q Consensus 376 A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~-~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~ 454 (530)
+++++++++......+....+ .+++.++..+++.+. .++..+++++++++... |. +...++- .+++.
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~----~~-----~~~~~l~--~i~~~ 643 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASL----GK-----GFEKYLE--TFSPY 643 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH----GG-----GGHHHHH--HHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH----hh-----hHHHHHH--HHHHH
Confidence 999999998754433322222 477888888888777 89999999999997532 10 1112222 27788
Q ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCc--HHHHHHHHHHH
Q 009647 455 FIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHEN--EDLRNMANGLV 518 (530)
Q Consensus 455 L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~--~~i~~~A~~il 518 (530)
+...|..++++++..++.++..++...+. .....+ ...++.+.....+++ .+++..+...+
T Consensus 644 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 644 LLKALNQVDSPVSITAVGFIADISNSLEE-DFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHhch-hccchH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence 99999888888999999999998876542 111111 123344433333433 66776665444
No 49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.57 E-value=7.8e-13 Score=142.41 Aligned_cols=287 Identities=14% Similarity=0.080 Sum_probs=186.7
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH-Hhh-cC
Q 009647 101 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET-KAL-LP 178 (530)
Q Consensus 101 ~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~-~~i-~~ 178 (530)
+.+.++++.++..|+.++.++....++ .+.+.+++|.+..+|...+ +.++..|+++|..++..+++.. ..+ .+
T Consensus 128 ~~L~d~~~~VRk~A~~al~~i~~~~p~----~~~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~~l~~~ 202 (591)
T 2vgl_B 128 KCLKDEDPYVRKTAAVCVAKLHDINAQ----MVEDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLLDLNPQ 202 (591)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHSSCC----CHHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhhChh----hcccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccchhccHH
Confidence 455689999999999999999764432 1344688999999998544 6787889999999997765331 111 13
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC--CCCc
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP--DPKP 256 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~~ 256 (530)
.++.|+..+.. .++..+...+.+|++++...+... ..+++.+..++++.+..++..|+|++.++...- ++..
T Consensus 203 ~~~~Ll~~l~~-~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 203 NINKLLTALNE-CTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBS
T ss_pred HHHHHHHcCCC-CCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHH
Confidence 57777877776 678888999999999986544332 345778888999999999999999999997531 2222
Q ss_pred hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647 257 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 257 ~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~ 336 (530)
.... ...+.+.|+.++. ++++++..++.+|..+....++.... .+..+.. + .+++..++..|+..+.+++
T Consensus 277 ~~~~--~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~~-~-~~d~~~Ir~~al~~L~~l~ 346 (591)
T 2vgl_B 277 YNML--LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVFFV-K-YNDPIYVKLEKLDIMIRLA 346 (591)
T ss_dssp HHHH--HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTSC-C-TTSCHHHHHHHHHHHHHTC
T ss_pred HHHH--HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhhee-c-cCChHHHHHHHHHHHHHHC
Confidence 2211 2466677777664 78899999999999998643322211 1111111 1 1233556677777777766
Q ss_pred cCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647 337 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 416 (530)
Q Consensus 337 ~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~ 416 (530)
..+. . ..+++.|..++.+.+..+|++++++|++++...+..... .++.|++++.+....++.
T Consensus 347 ~~~n--v-----------~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~-----~v~~Ll~ll~~~~~~v~~ 408 (591)
T 2vgl_B 347 SQAN--I-----------AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER-----CVSTLLDLIQTKVNYVVQ 408 (591)
T ss_dssp CSST--H-----------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHHHTCCHHHHH
T ss_pred Chhh--H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH-----HHHHHHHHHcccchHHHH
Confidence 4332 1 135666666666666777777777777776655432222 334555555555555555
Q ss_pred HHHHHHHHhc
Q 009647 417 EVAYVLGNLC 426 (530)
Q Consensus 417 eA~~aL~nl~ 426 (530)
+++.++.++.
T Consensus 409 e~i~~l~~ii 418 (591)
T 2vgl_B 409 EAIVVIRDIF 418 (591)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.57 E-value=5.1e-13 Score=144.46 Aligned_cols=356 Identities=13% Similarity=0.095 Sum_probs=249.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647 93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 172 (530)
Q Consensus 93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~ 172 (530)
+.+|.+.++ +++...+..++..+-.+...+.+- .-+.+-.+.++.+.+ ...++-+..++.+++..+++.
T Consensus 36 ~~~ir~~l~---~~~~~~k~~~l~kli~~~~~G~d~-------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~ 104 (618)
T 1w63_A 36 CAAIRSSFR---EEDNTYRCRNVAKLLYMHMLGYPA-------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDV 104 (618)
T ss_dssp HHHHHHHHT---TTCTTTHHHHHHHHHHHHHTTCCC-------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHhh---CCCHHHHHHHHHHHHHHHHcCCCC-------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHH
Confidence 445555554 667777888887777765555433 235666778888655 556666778888888776543
Q ss_pred HHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647 173 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 252 (530)
Q Consensus 173 ~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 252 (530)
.. -++..|.+-|.+ +++.++..|+++|++|.. ++. ....++.+.+++.++++.+++.|++++.++++..
T Consensus 105 ~~---l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~--~~~-----~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~ 173 (618)
T 1w63_A 105 HL---LMTNCIKNDLNH-STQFVQGLALCTLGCMGS--SEM-----CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV 173 (618)
T ss_dssp HH---HHHHHHHHHHSC-SSSHHHHHHHHHHHHHCC--HHH-----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred HH---HHHHHHHHhcCC-CCHhHHHHHHHHHHhcCC--HHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 22 367788888887 789999999999999984 332 2356788999999999999999999999999753
Q ss_pred CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc--------------
Q 009647 253 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-------------- 318 (530)
Q Consensus 253 ~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~-------------- 318 (530)
| +.+ .++++.+..++.+.|+.++..|+++|..++..+++....+ ...++.++.+|..
T Consensus 174 -p----~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~ 244 (618)
T 1w63_A 174 -P----ELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSG 244 (618)
T ss_dssp -G----GGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSS
T ss_pred -h----HHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccC
Confidence 3 232 3788889999999999999999999999997544322222 3678888877742
Q ss_pred CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh------ccCcHhHHHHHHHHHHHHhcCCHHHHH
Q 009647 319 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL------KSEHRVLKKEAAWVLSNIAAGSVEHKQ 392 (530)
Q Consensus 319 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL------~~~~~~i~~~A~~~Lsnl~~~~~~~~~ 392 (530)
..++..+..++++|+.++..++..... +++.|..++ ++.+..+..+|++++.++.. .+....
T Consensus 245 ~~~~~~q~~il~~L~~l~~~~~~~~~~-----------~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~ 312 (618)
T 1w63_A 245 ISDPFLQVRILRLLRILGRNDDDSSEA-----------MNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV 312 (618)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCHHHHHT-----------THHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHH-----------HHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH
Confidence 246777888999999998765433222 344444444 23456899999999999854 332222
Q ss_pred HHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHH
Q 009647 393 LIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ 472 (530)
Q Consensus 393 ~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~ 472 (530)
.+++.|..++.++++.+|..|+.+|..++.. + ..++ ......++..|.++|..+...+++
T Consensus 313 -----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~-------------~-p~~~-~~~~~~i~~~l~d~d~~Ir~~ale 372 (618)
T 1w63_A 313 -----LAINILGRFLLNNDKNIRYVALTSLLKTVQT-------------D-HNAV-QRHRSTIVDCLKDLDVSIKRRAME 372 (618)
T ss_dssp -----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH-------------H-HHHH-GGGHHHHHHGGGSSCHHHHHHHHH
T ss_pred -----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh-------------C-HHHH-HHHHHHHHHHccCCChhHHHHHHH
Confidence 3567888889999999999999999999742 1 1222 235667888899999999999999
Q ss_pred HHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHh
Q 009647 473 FMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 520 (530)
Q Consensus 473 ~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~ 520 (530)
.|..+... .+ ....+ +.|.....+.+.+++..+...|.+
T Consensus 373 lL~~l~~~--~n-v~~iv------~eL~~~l~~~d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 373 LSFALVNG--NN-IRGMM------KELLYFLDSCEPEFKADCASGIFL 411 (618)
T ss_dssp HHHHHCCS--SS-THHHH------HHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHccc--cc-HHHHH------HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99888642 11 11222 333333344566777666544433
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.55 E-value=7.7e-14 Score=156.85 Aligned_cols=344 Identities=13% Similarity=0.183 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-hhHHhhc-CCcHHHHH
Q 009647 108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL-PALPLLIA 185 (530)
Q Consensus 108 ~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~-~~~~~i~-~~v~~L~~ 185 (530)
...+..|...+..+....... ++ ..++|.+.+.+.+.+ ...+..|+++++.++.+.. +.....+ ..+|.++.
T Consensus 345 ~~~r~~a~~~L~~l~~~~~~~----~~-~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~ 418 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQNCGNH----IL-EPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG----GH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHccHh----HH-HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 456777777777764322111 11 234566666666544 4455569999999997753 4444444 58899999
Q ss_pred hhcCCCCHHHHHHHHHHHHhhcCCCchh-HHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC---CCchhhHH
Q 009647 186 HLGEKSSSPVAEQCAWALGNVAGEGEEF-RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD---PKPATELI 261 (530)
Q Consensus 186 lL~~~~~~~v~~~a~~~L~nla~d~~~~-r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~---~~~~~~~v 261 (530)
.+.+ +++.++..++|+|++++...... ...-.-..+++.++..+.++ +.++..++|+|.+++.... +......
T Consensus 419 ~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~- 495 (861)
T 2bpt_A 419 LMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF- 495 (861)
T ss_dssp GGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG-
T ss_pred HcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH-
Confidence 9987 78999999999999998532110 00001123567788888765 8999999999999987522 1211222
Q ss_pred HhhchHHHHHHHhccCC--HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC--------------CCccch
Q 009647 262 KVDGLLDAILRHLKRAD--EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS--------------NSLQLL 325 (530)
Q Consensus 262 ~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~--------------~~~~v~ 325 (530)
...+++.|++++.+.| +.++..+++++..++..........+. .+++.++..|... ....++
T Consensus 496 -~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~ 573 (861)
T 2bpt_A 496 -YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ 573 (861)
T ss_dssp -HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence 2467888888888544 689999999999999754443332222 4667777766421 123456
Q ss_pred hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH
Q 009647 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL 404 (530)
Q Consensus 326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li 404 (530)
..++.+|++++..........+ ..+++.+..++.+.+. .++..+++++++++..........+. .++|.|.
T Consensus 574 ~~~~~~l~~l~~~~~~~~~~~~-------~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~ 645 (861)
T 2bpt_A 574 SNILTVLAAVIRKSPSSVEPVA-------DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLL 645 (861)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGH-------HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHH
Confidence 7899999999876554333333 3688899999988777 89999999999998653333333333 2788999
Q ss_pred HHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC--HHHHHHHHHHHHHHHccC
Q 009647 405 HLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD--IEAARLGLQFMELVLRGM 481 (530)
Q Consensus 405 ~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d--~~i~~~~L~~L~~il~~~ 481 (530)
..+.+.++.++..|+++++.++... |. .+..++ ..+++.++..|.+.+ +.++..++.++..++...
T Consensus 646 ~~l~~~~~~vr~~a~~~l~~l~~~~----~~--~~~~~~-----~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~ 713 (861)
T 2bpt_A 646 KALNQVDSPVSITAVGFIADISNSL----EE--DFRRYS-----DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713 (861)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHT----GG--GGHHHH-----HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHh----ch--hccchH-----HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence 9998888899999999999998642 11 111122 345677888887754 788888999998887654
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.55 E-value=4.2e-13 Score=139.48 Aligned_cols=388 Identities=12% Similarity=0.100 Sum_probs=261.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChhhHH
Q 009647 96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQEETK 174 (530)
Q Consensus 96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~eA~~~L~nia~~~~~~~~ 174 (530)
|.+++....++|.+.+.+|...|.++-. . + ..+.++.|+.+|...+ ++.++.-|+.+|.|+.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~-~-~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAV-E-N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHH-H-H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh-h-C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 4456666678999999999999988632 1 0 1346677888887653 456666699999998754311100
Q ss_pred -------hhc------CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHH
Q 009647 175 -------ALL------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVR 239 (530)
Q Consensus 175 -------~i~------~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~ 239 (530)
..+ ..-..++..|.+ +++.+ .+++.+++.|+....... .-.+.+|.|+..+.++ +..++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHH
Confidence 001 133457777776 56678 899999999986321100 1135788888888888 899999
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC--CHHHHHHHHHHHHHhhcCCchhHH-HHHhcCchHHHHHHH
Q 009647 240 TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSNVATS-LLVKSGVLQLLVERL 316 (530)
Q Consensus 240 ~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~l~~Lv~lL 316 (530)
.++++|..++....+...... ...+++.+..++.++ ++.++..+++++.++...-.+... .....-+++.+...+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 226 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCchhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 999999999964222211122 246888899999887 789999999999987643221110 011111355555555
Q ss_pred hcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH-------
Q 009647 317 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE------- 389 (530)
Q Consensus 317 ~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~------- 389 (530)
.+.++.++..++++|+.++..........+. ..+++.+...+.+.++.++..|++.+++++.....
T Consensus 227 -~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 299 (462)
T 1ibr_B 227 -QCPDTRVRVAALQNLVKIMSLYYQYMETYMG------PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299 (462)
T ss_dssp -TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT------TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4678889999999999999765543333331 15888888888888999999999999998753200
Q ss_pred --------------HHHHHHhCCcHHHHHHHhcCC-------ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647 390 --------------HKQLIHSSEALALLLHLLSTS-------PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448 (530)
Q Consensus 390 --------------~~~~li~~~~l~~Li~lL~~~-------~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~ 448 (530)
.++..+ ..++|.++..+... +..++..|+.+|..++... +. ...
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~----~~-----~~~----- 364 (462)
T 1ibr_B 300 AAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC----ED-----DIV----- 364 (462)
T ss_dssp TTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT----TT-----THH-----
T ss_pred ccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc----cH-----HHH-----
Confidence 111111 23677777777532 3578999999999997532 10 111
Q ss_pred cCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647 449 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 523 (530)
Q Consensus 449 ~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~ 523 (530)
..+++.+...|.+.++.++..++.+|..+...+........+ ...++.|..+..++++.|+..|...|.+|..
T Consensus 365 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 235677778888999999999999999998654311111112 3567778888889999999999998888754
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.52 E-value=5.3e-13 Score=150.28 Aligned_cols=382 Identities=16% Similarity=0.155 Sum_probs=230.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-hhHHhhc-CCcHHHH
Q 009647 107 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL-PALPLLI 184 (530)
Q Consensus 107 d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~-~~~~~i~-~~v~~L~ 184 (530)
+...+..|...+..+...... .++ ..++|.+...|.+.+ ...+..|+++|+.++.+.. +.....+ ..+|.++
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~----~~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~ 414 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCED----DIV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGG----GGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCcH----hhH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345666777777666432211 112 245666667776544 5565669999999998764 3333333 5899999
Q ss_pred HhhcCCCCHHHHHHHHHHHHhhcCCCchhH-HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC----------
Q 009647 185 AHLGEKSSSPVAEQCAWALGNVAGEGEEFR-NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD---------- 253 (530)
Q Consensus 185 ~lL~~~~~~~v~~~a~~~L~nla~d~~~~r-~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~---------- 253 (530)
..|.+ +++.|+..|+|+|++++...+..- ..-.-..+++.|+..+.++ +.++..++|+|.+++....
T Consensus 415 ~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~ 492 (876)
T 1qgr_A 415 ELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQE 492 (876)
T ss_dssp HHHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCC
T ss_pred HHhCC-CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 99987 789999999999999997533210 0001124567778888764 8899999999999986411
Q ss_pred ---CCchhhHHHhhchHHHHHHHhccCC---HHHH---------------------------------------------
Q 009647 254 ---PKPATELIKVDGLLDAILRHLKRAD---EELT--------------------------------------------- 282 (530)
Q Consensus 254 ---~~~~~~~v~~~~~l~~L~~lL~~~d---~~v~--------------------------------------------- 282 (530)
....... ...++|.|..++...+ ..++
T Consensus 493 ~~~~~~l~~~--~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 570 (876)
T 1qgr_A 493 EPATYCLSSS--FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQS 570 (876)
T ss_dssp CCCCCSSTTT--HHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCS
T ss_pred cccchhhhHh--HHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0001111 2356666666665331 2333
Q ss_pred -----------HHHHHHHHHhhcCCc-hhHHHHHhcCchHHHHHHHhcCCC--ccchhhhHHHHhhhhcCCccccchhcc
Q 009647 283 -----------TEVAWVVVYLSALSN-VATSLLVKSGVLQLLVERLATSNS--LQLLIPVLRSLGNLVAGDSSTISDVLV 348 (530)
Q Consensus 283 -----------~~a~~~L~~L~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i~ 348 (530)
..+++++..++..-. ...... -..+++.++..+. +.. ..++..++.+++.++.........++
T Consensus 571 ~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~l~~~l~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~- 647 (876)
T 1qgr_A 571 TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI-SDVVMASLLRMFQ-STAGSGGVQEDALMAVSTLVEVLGGEFLKYM- 647 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTT-HHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGH-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHH-HHHHHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHHhhHHHHH-
Confidence 344445544444222 111111 1235566666663 332 36788999999999875444333333
Q ss_pred cCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC--CChhHHHHHHHHHHHh
Q 009647 349 PGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNL 425 (530)
Q Consensus 349 ~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~--~~~~v~~eA~~aL~nl 425 (530)
..++|.+...+.+. ++.+|..|+++++.|+......+...++ .+++.++..+.+ .+.+++..++++++++
T Consensus 648 ------~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i 720 (876)
T 1qgr_A 648 ------EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDI 720 (876)
T ss_dssp ------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHH
Confidence 25889999999876 7899999999999998643333333333 478888898877 4578999999999999
Q ss_pred cCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC----CH-------HHHHHHHHHHHHHHccCCCC---------c
Q 009647 426 CVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA----DI-------EAARLGLQFMELVLRGMPNH---------E 485 (530)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~----d~-------~i~~~~L~~L~~il~~~~~~---------~ 485 (530)
+... ++. ...++ ..+++.+...+... |+ .+...+++++..++...... .
T Consensus 721 ~~~~---g~~------~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~ 789 (876)
T 1qgr_A 721 ALAI---GGE------FKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVML 789 (876)
T ss_dssp HHHH---GGG------GGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGG
T ss_pred HHHh---chh------HHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHH
Confidence 7521 011 01111 23556666666543 22 56677788888777643211 1
Q ss_pred chhHHHHhchHHHHHHHhcCC--cHHHHHHHHHHHHhh
Q 009647 486 GTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDKY 521 (530)
Q Consensus 486 ~~~~i~~~ggl~~L~~L~~~~--~~~i~~~A~~il~~~ 521 (530)
....+. ..++.+..+..++ ++.++..|...|..+
T Consensus 790 ~~~~~~--~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l 825 (876)
T 1qgr_A 790 VQPRVE--FILSFIDHIAGDEDHTDGVVACAAGLIGDL 825 (876)
T ss_dssp SGGGHH--HHHHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 111111 1223444444555 788998887766654
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.50 E-value=1.1e-12 Score=120.72 Aligned_cols=183 Identities=22% Similarity=0.272 Sum_probs=157.4
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
..+.++++|.+ +++.++..|+++|+.+.. ...++.|+.++.++++.++..++++|..+..
T Consensus 15 ~~~~~i~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 15 KVEMYIKNLQD-DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred chHHHHHHhcC-CCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 67899999988 899999999999998764 2468999999999999999999999998851
Q ss_pred hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
...++.|..++.++++.++..++++|..+.. ...++.|+.+| .++++.++..|+++|+++..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence 2567889999999999999999999999863 24678888888 57888999999999999842
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 418 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA 418 (530)
...++.|..++.++++.+|..|+++|+.+ +.+. .++.|..++.++++.++..|
T Consensus 137 ----------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~--~~~~---------~~~~L~~~l~d~~~~vr~~A 189 (201)
T 3ltj_A 137 ----------------ERAVEPLIKALKDEDGWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVA 189 (201)
T ss_dssp ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH--CSHH---------HHHHHHHHHHHCCHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--Cchh---------HHHHHHHHHhCCCHHHHHHH
Confidence 24889999999999999999999999999 3322 67888899999999999999
Q ss_pred HHHHHHhc
Q 009647 419 AYVLGNLC 426 (530)
Q Consensus 419 ~~aL~nl~ 426 (530)
.++|.++-
T Consensus 190 ~~aL~~l~ 197 (201)
T 3ltj_A 190 VNYLETHK 197 (201)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 99999874
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.50 E-value=4.9e-13 Score=124.08 Aligned_cols=185 Identities=21% Similarity=0.252 Sum_probs=157.2
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
.++.|+.+|.+ +++.++..|+++|+.+.. ..+++.|+.++.++++.++..++++|+.+..
T Consensus 20 ~~~~L~~~L~~-~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQD-DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 78999999987 899999999999999764 2578999999999999999999999998852
Q ss_pred hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
...++.|..++.++++.++..++++|..+.. .+.++.|+.+| .++++.++..|+.+|+++..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence 2567889999999999999999999999863 24678888888 58889999999999999831
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 418 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA 418 (530)
...++.|..++.++++.+|..|+++|+.+.. + .+++.|..++.++++.||..|
T Consensus 142 ----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A 194 (211)
T 3ltm_A 142 ----------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVA 194 (211)
T ss_dssp ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHH
Confidence 2478899999999999999999999999942 2 267788999999999999999
Q ss_pred HHHHHHhcCC
Q 009647 419 AYVLGNLCVS 428 (530)
Q Consensus 419 ~~aL~nl~~~ 428 (530)
.++|.++...
T Consensus 195 ~~aL~~~~~~ 204 (211)
T 3ltm_A 195 VNYLETHKSF 204 (211)
T ss_dssp HHHHHC----
T ss_pred HHHHHhcCCC
Confidence 9999999754
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.49 E-value=3.4e-12 Score=143.69 Aligned_cols=368 Identities=11% Similarity=0.142 Sum_probs=241.7
Q ss_pred HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcC
Q 009647 92 AVEELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAG 168 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~--d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~eA~~~L~nia~~ 168 (530)
.++.+.+.+. ++ ++..+..|+..+..+...-. +....-.-..+++.+...+..++ +..++..|+++|.+++..
T Consensus 129 ll~~l~~~l~---~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 129 LIPQLVANVT---NPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHhcC-HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455555554 67 88999999999998865321 11100011346777888887653 466777899999998854
Q ss_pred ChhhHH--hhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHH
Q 009647 169 KQEETK--ALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 245 (530)
Q Consensus 169 ~~~~~~--~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L 245 (530)
-..... ... ..++.+..++.+ ++.+++..|+++|+.++...+..-...+...+++.++..+.+.+..++..+++++
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 332211 011 246677777765 7899999999999999975544323334446788888888888899999999999
Q ss_pred HHhhcCC---------------CC-CchhhHH--HhhchHHHHHHHhcc-------CCHHHHHHHHHHHHHhhcCCchhH
Q 009647 246 SNLIKGP---------------DP-KPATELI--KVDGLLDAILRHLKR-------ADEELTTEVAWVVVYLSALSNVAT 300 (530)
Q Consensus 246 ~nL~~~~---------------~~-~~~~~~v--~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~L~~~~~~~~ 300 (530)
.+++... .| ....... ....++|.++..+.. ++..++..+..+|..++....+.
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~- 362 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD- 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh-
Confidence 9887531 00 0111111 124677888888753 23468889999999988632221
Q ss_pred HHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc-cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHH
Q 009647 301 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV 379 (530)
Q Consensus 301 ~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~ 379 (530)
++ ..+++.+...+ .+.++.++..|+.++|.++.+.. ......+ ..++|.++..+.++++.+|..|+|+
T Consensus 363 --~~-~~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-------~~~l~~l~~~l~d~~~~vr~~a~~~ 431 (876)
T 1qgr_A 363 --IV-PHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-------IQAMPTLIELMKDPSVVVRDTAAWT 431 (876)
T ss_dssp --GH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-------HHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred --hH-HHHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-------HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 11 23556666666 46788899999999999997764 3232333 3689999999999999999999999
Q ss_pred HHHHhcCCHHHH--HHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC-----CC---CchhHHHHHHHHHhc
Q 009647 380 LSNIAAGSVEHK--QLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG-----EG---KPKLIQEHLVSLVGR 449 (530)
Q Consensus 380 Lsnl~~~~~~~~--~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~-----~~---~~~~~~~~~~~l~~~ 449 (530)
+++++...+... ...+ ..+++.|+..+.+. +.++..|+|+|.+++...... .+ .+..+..+. .
T Consensus 432 l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----~ 504 (876)
T 1qgr_A 432 VGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF-----E 504 (876)
T ss_dssp HHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH-----H
T ss_pred HHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH-----H
Confidence 999987543211 0111 13678888888775 889999999999998531000 00 000000011 2
Q ss_pred CChHHHHhhhccC---CHHHHHHHHHHHHHHHccCCC
Q 009647 450 GCLSGFIDLVRSA---DIEAARLGLQFMELVLRGMPN 483 (530)
Q Consensus 450 g~i~~L~~lL~~~---d~~i~~~~L~~L~~il~~~~~ 483 (530)
.+++.|+.++... +..+...+++++..+....+.
T Consensus 505 ~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 4677788888764 346777889999988876653
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.48 E-value=3.6e-13 Score=139.97 Aligned_cols=353 Identities=13% Similarity=0.132 Sum_probs=235.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCC----------cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh
Q 009647 106 GAMQKRVNALRELRRLLSRFEFP----------PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 175 (530)
Q Consensus 106 ~d~~~~~~a~~~lr~lls~~~~~----------~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~ 175 (530)
.++..+..|+..|++++.....+ .+..-....+-..|+..|.+++. .+ ..++.++..|+...... ..
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~-~v-~~~~~~i~~ia~~~~~~-~~ 125 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY-RP-SSASQCVAGIACAEIPV-NQ 125 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS-SS-CSHHHHHHHHHHHHGGG-TC
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc-hh-hHHHHHHHHHHHHhccc-cc
Confidence 47889999999999998643110 00111223345567777876553 45 66899999998643211 11
Q ss_pred hcCCcHHHHHhhcCCC-CHHHHHHHHHHHHhhcCCC-chhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHHHHHhhcC
Q 009647 176 LLPALPLLIAHLGEKS-SSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKG 251 (530)
Q Consensus 176 i~~~v~~L~~lL~~~~-~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~ 251 (530)
.-+.+|.|+..+.+.+ ++.+++.|+++|+.++.+. +..-.... ..+++.++.++.++ +..++..+++++.++...
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2258899999998732 8899999999999999643 22111111 23677888888877 789999999999997643
Q ss_pred CCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHH
Q 009647 252 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS 331 (530)
Q Consensus 252 ~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~ 331 (530)
-......... ..-+++.+...+.+++++++..++++|..++....+.....+..++++.++..+ .+.++.++..|+.+
T Consensus 205 ~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 205 TKANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEF 282 (462)
T ss_dssp THHHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHH
T ss_pred HHHhhhhhHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHH
Confidence 1100000010 122477777778888999999999999999975443322222225677777777 46778899999999
Q ss_pred HhhhhcCCc-----------------cccchhcccCCCcchhhHHHHHHHhccC-------cHhHHHHHHHHHHHHhcCC
Q 009647 332 LGNLVAGDS-----------------STISDVLVPGHGITDQVIAVLVKCLKSE-------HRVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 332 L~nl~~~~~-----------------~~~~~~i~~g~~~~~~~l~~L~~lL~~~-------~~~i~~~A~~~Lsnl~~~~ 387 (530)
++.++.... .....++.. .-..++|.++..+... +..+|..|+.+|..++...
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~ 359 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG---ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHH---HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHH---HhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc
Confidence 998875420 000001100 0024677777777532 3578999999999997654
Q ss_pred HHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHH
Q 009647 388 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA 467 (530)
Q Consensus 388 ~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~ 467 (530)
++ .++. .++|.+...+.+.+..+|..|+++|+.++.+.. +. .+... -..+++.++..|.++++.++
T Consensus 360 ~~---~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-----~~----~~~~~-l~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 360 ED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-----PS----QLKPL-VIQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp TT---THHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-----TT----TTCTT-TTTHHHHHHHGGGCSCHHHH
T ss_pred cH---HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-----HH----HHHHH-HHHHHHHHHHHhcCCCHHHH
Confidence 32 2222 367788888899999999999999999997532 10 01111 14688999999999999999
Q ss_pred HHHHHHHHHHHccC
Q 009647 468 RLGLQFMELVLRGM 481 (530)
Q Consensus 468 ~~~L~~L~~il~~~ 481 (530)
..++++|.++....
T Consensus 426 ~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 426 DTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998643
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.46 E-value=1e-11 Score=145.15 Aligned_cols=397 Identities=10% Similarity=0.117 Sum_probs=264.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009647 95 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK 174 (530)
Q Consensus 95 ~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~ 174 (530)
.+.+++..+.++|.+.+..|+..|.+.+..... ..+.-....+++.+++.|.+. ++.++..|+.+|.+++.+-++ .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~--~ 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE--Y 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH--H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH--H
Confidence 455667777899999999999999988654321 111112235788899999854 467777799999999976443 2
Q ss_pred hhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH-----HHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHh
Q 009647 175 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR-----NVLLSQGALPPLARMML-PNKGSTVRTAAWALSNL 248 (530)
Q Consensus 175 ~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r-----~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL 248 (530)
.+-..++.++..|.+ +++.+|..|+.+|+.++....... ..-.-..++|.|+..+. +++..++..++.+|..+
T Consensus 83 ~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 222467888888877 677899999999999985433210 01112346889999998 57899999999999999
Q ss_pred hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647 249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328 (530)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a 328 (530)
+....... ... ...+++.++..+.++++.++..++.+|..++...++. + -..+++.++..|....+..++..+
T Consensus 162 ~~~~~~~l-~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 162 LSRQGGLL-VNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHTCSSC-TTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHhHhHH-HHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHH
Confidence 85321111 112 2477888888898889999999999999999754322 1 234678888888654455788899
Q ss_pred HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc
Q 009647 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 408 (530)
Q Consensus 329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~ 408 (530)
+.+++.++..........+ ..++|.+...+.+.++.+|..+++++..++...++.+...+. .++|.++..+.
T Consensus 235 ~~~l~~l~~~~~~~~~~~l-------~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~ 306 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIGEYL-------EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLT 306 (1230)
T ss_dssp HHHHHHHHHHSSGGGTTSC-------TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCC
T ss_pred HHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhC
Confidence 9999999875544333333 369999999999888999999999999998754332222221 24455544442
Q ss_pred C-------------------------------------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC
Q 009647 409 T-------------------------------------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 451 (530)
Q Consensus 409 ~-------------------------------------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~ 451 (530)
. ...++|+.|+.++..++... |. ..... -..+
T Consensus 307 ~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~------~~----~~~~~-~~~l 375 (1230)
T 1u6g_C 307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR------HE----MLPEF-YKTV 375 (1230)
T ss_dssp CC------------------------------------CTTHHHHHHHHHHHHHHTTC------CT----THHHH-HTTT
T ss_pred CCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc------hh----HHHHH-HHHH
Confidence 1 11347888999999988631 10 11111 1456
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCc-------------ch-hHHHH--hchHHHHHHHhcCCcHHHHHHHH
Q 009647 452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHE-------------GT-KLVER--EDGIDAMERFQFHENEDLRNMAN 515 (530)
Q Consensus 452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~-------------~~-~~i~~--~ggl~~L~~L~~~~~~~i~~~A~ 515 (530)
++.++..+...++.++..++.++..++....... .+ ..+.. ...++.+.....++++.++..+.
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 7888888888888899889998888876422100 00 11111 12334455556678888887777
Q ss_pred HHHHhhc
Q 009647 516 GLVDKYF 522 (530)
Q Consensus 516 ~il~~~f 522 (530)
..+..+.
T Consensus 456 ~~L~~l~ 462 (1230)
T 1u6g_C 456 NMLTELV 462 (1230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 59
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.46 E-value=1.1e-11 Score=134.12 Aligned_cols=367 Identities=11% Similarity=0.062 Sum_probs=202.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcH
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP 181 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~ 181 (530)
.+.+.++.++..|+.++.++.... |. .+ .+.++.+..+|...+ +.++..|+++|..++..+++....+...+|
T Consensus 150 ~L~~~~~~VRk~A~~al~~l~~~~--p~---~v-~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~ 222 (618)
T 1w63_A 150 LLKTSNSYLRKKAALCAVHVIRKV--PE---LM-EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLAHFRKLVP 222 (618)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHC--GG---GG-GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHHHHHTTHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHC--hH---HH-HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 334788888888888888886543 22 12 267777777886544 677778999999998776543334446788
Q ss_pred HHHHhhcC--------------CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC------CCChhHHHHH
Q 009647 182 LLIAHLGE--------------KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML------PNKGSTVRTA 241 (530)
Q Consensus 182 ~L~~lL~~--------------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~------~~~~~~~~~a 241 (530)
.++.+|.+ .+++-.+..++.+|+.++..++...+ ..++.|..++. +.+..++..|
T Consensus 223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea 297 (618)
T 1w63_A 223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYET 297 (618)
T ss_dssp HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHH
Confidence 88877652 24678888888999998876554322 22333333332 1234556666
Q ss_pred HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC
Q 009647 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS 321 (530)
Q Consensus 242 ~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~ 321 (530)
++++..+... + .. ...+++.|..++.+++++++..++.+|..++...+. .+ ......++..+ .+++
T Consensus 298 ~~~i~~l~~~----~--~l--~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~--~~~~~~i~~~l-~d~d 363 (618)
T 1w63_A 298 VLTIMDIKSE----S--GL--RVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AV--QRHRSTIVDCL-KDLD 363 (618)
T ss_dssp HHHHHHSCCC----H--HH--HHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HH--GGGHHHHHHGG-GSSC
T ss_pred HHHHHhcCCC----H--HH--HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HH--HHHHHHHHHHc-cCCC
Confidence 6666655311 1 11 124455555666656666666666666666542221 11 12334444444 3455
Q ss_pred ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCH----HHHHH----
Q 009647 322 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV----EHKQL---- 393 (530)
Q Consensus 322 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~----~~~~~---- 393 (530)
..++..|+.+|..++...+. . .+++.|...+.+.+..+|..++.+|+.++...+ ..+..
T Consensus 364 ~~Ir~~alelL~~l~~~~nv--~-----------~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~l 430 (618)
T 1w63_A 364 VSIKRRAMELSFALVNGNNI--R-----------GMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRV 430 (618)
T ss_dssp HHHHHHHHHHHHHHCCSSST--H-----------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcccccH--H-----------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 55556666666665543321 0 234444555545555555555555555554210 01110
Q ss_pred ------------------HHh------CCcHHHHHHHhcC--CChhHHHHHHHHHHHhcCCCCCC--CC-CchhHHHHHH
Q 009647 394 ------------------IHS------SEALALLLHLLST--SPFDIKKEVAYVLGNLCVSPTEG--EG-KPKLIQEHLV 444 (530)
Q Consensus 394 ------------------li~------~~~l~~Li~lL~~--~~~~v~~eA~~aL~nl~~~~~~~--~~-~~~~~~~~~~ 444 (530)
++. ..+++.|+..+.+ ....+.+.++|+|+..+..-..+ .+ .|.
T Consensus 431 L~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~------- 503 (618)
T 1w63_A 431 LTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPI------- 503 (618)
T ss_dssp HHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCC-------
T ss_pred HHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccccc-------
Confidence 000 0134556666653 23344556888888775310000 00 000
Q ss_pred HHHhcCChHHHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 445 SLVGRGCLSGFIDLVR--SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 445 ~l~~~g~i~~L~~lL~--~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
......+++.|..+++ ..++.++..++.++..+....+. ....+ ...|.....+.|.+|+++|...+.-+
T Consensus 504 ~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l-----~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 504 QVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRI-----KKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp CCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 0000113344555554 46788999999999888765442 12222 23466677889999999998766543
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.44 E-value=4.1e-12 Score=117.82 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=156.1
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 215 (530)
.+.++.|+.+|.+++ +.++..|+++|..+... +++|.|+.+|.+ +++.++..|+++|+++..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~~---------~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGDE---------RAVEPLIKALKD-EDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCCG---------GGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCc---------cHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-------
Confidence 457899999998654 67778899999987641 378999999987 789999999999999863
Q ss_pred HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009647 216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 295 (530)
Q Consensus 216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 295 (530)
.+.++.|+.++.++++.++..++++|..+.. ...+|.|..++.++++.++..++++|..+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 2468899999999999999999999998852 2567889999999999999999999999853
Q ss_pred CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHH
Q 009647 296 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE 375 (530)
Q Consensus 296 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~ 375 (530)
...++.|..+| .++++.++..|+.+|+.+.. ..+++.|..++.++++.||..
T Consensus 142 ----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-----------------~~~~~~L~~~l~d~~~~vr~~ 193 (211)
T 3ltm_A 142 ----------ERAVEPLIKAL-KDEDGWVRQSAADALGEIGG-----------------ERVRAAMEKLAETGTGFARKV 193 (211)
T ss_dssp ----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS-----------------HHHHHHHHHHHHHCCHHHHHH
T ss_pred ----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc-----------------hhHHHHHHHHHhCCCHHHHHH
Confidence 24678888888 57888999999999999841 258889999999999999999
Q ss_pred HHHHHHHHhcCC
Q 009647 376 AAWVLSNIAAGS 387 (530)
Q Consensus 376 A~~~Lsnl~~~~ 387 (530)
|.++|.++....
T Consensus 194 A~~aL~~~~~~~ 205 (211)
T 3ltm_A 194 AVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHhcCCCC
Confidence 999999997654
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.42 E-value=8.2e-12 Score=114.82 Aligned_cols=185 Identities=20% Similarity=0.221 Sum_probs=156.7
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 215 (530)
.+..+.++++|.+++ +.++..|+++|..+... ++++.|+.+|.+ +++.++..|+++|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~~---------~~~~~L~~~l~~-~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGDE---------RAVEPLIKALKD-EDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCCG---------GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCCh---------hHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-------
Confidence 467889999998876 67778899999987641 368999999987 789999999999999863
Q ss_pred HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009647 216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 295 (530)
Q Consensus 216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 295 (530)
..+++.|+.++.++++.++..++|+|..+.. ...++.|..++.++++.++..++++|..+..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 2468899999999999999999999998852 2467888999999999999999999999863
Q ss_pred CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHH
Q 009647 296 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE 375 (530)
Q Consensus 296 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~ 375 (530)
.+.++.|..++ .++++.++..|+.+|+.+. ...+++.|..++.++++.+|..
T Consensus 137 ----------~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~-----------------~~~~~~~L~~~l~d~~~~vr~~ 188 (201)
T 3ltj_A 137 ----------ERAVEPLIKAL-KDEDGWVRQSAADALGEIG-----------------GERVRAAMEKLAETGTGFARKV 188 (201)
T ss_dssp ----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHC-----------------SHHHHHHHHHHHHHCCHHHHHH
T ss_pred ----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhC-----------------chhHHHHHHHHHhCCCHHHHHH
Confidence 34678888888 5778899999999999983 1258889999999999999999
Q ss_pred HHHHHHHHh
Q 009647 376 AAWVLSNIA 384 (530)
Q Consensus 376 A~~~Lsnl~ 384 (530)
|.++|.++.
T Consensus 189 A~~aL~~l~ 197 (201)
T 3ltj_A 189 AVNYLETHK 197 (201)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 999999874
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.30 E-value=1.2e-10 Score=136.19 Aligned_cols=395 Identities=11% Similarity=0.066 Sum_probs=254.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh------
Q 009647 99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE------ 172 (530)
Q Consensus 99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~------ 172 (530)
+++.+.+.++..|..|+.++..+...-.. . .+ ..+++.++..|.+++ +.++..|+.+|..++..-...
T Consensus 53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~-~~-~~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~~~~~~~ 126 (1230)
T 1u6g_C 53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y-QV-ETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPASSGSAL 126 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H-HH-HHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC-----CCT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H-HH-HHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCcccccch
Confidence 34445688999999999999998654322 1 11 346788888887655 455556889999988433221
Q ss_pred HHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch-hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647 173 TKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 250 (530)
Q Consensus 173 ~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 250 (530)
..... ..+|.|+..+.+++++.+++.|+.+|+.++...+. .... -..+++.|+..+.+++..++..++.+|..++.
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 11122 57899999997446789999999999999843211 1111 12356778888888889999999999999996
Q ss_pred CCCCCchhhHHHhhchHHHHHHHhccCC-HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhH
Q 009647 251 GPDPKPATELIKVDGLLDAILRHLKRAD-EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL 329 (530)
Q Consensus 251 ~~~~~~~~~~v~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al 329 (530)
..... . ...++|.++..+...+ ..++..++.++..++......... .-..+++.++..+ .+.+++++..++
T Consensus 205 ~~~~~----~--~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l-~d~~~~vR~~a~ 276 (1230)
T 1u6g_C 205 SCGNI----V--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFC-NVDDDELREYCI 276 (1230)
T ss_dssp TC----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHH-SSCCTTTHHHHH
T ss_pred hcCHH----H--HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHh-cCCCHHHHHHHH
Confidence 53211 2 2467888888776543 467777888888888643322211 1246788888888 467888999999
Q ss_pred HHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-------------------------------------CcHhH
Q 009647 330 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-------------------------------------EHRVL 372 (530)
Q Consensus 330 ~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-------------------------------------~~~~i 372 (530)
.+++.++..........+ ..++|.++..+.. ....+
T Consensus 277 ~~l~~l~~~~~~~~~~~l-------~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v 349 (1230)
T 1u6g_C 277 QAFESFVRRCPKEVYPHV-------STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV 349 (1230)
T ss_dssp HHHHHHHHCTTCCCHHHH-------HHHHHHHTTCCCCC------------------------------------CTTHH
T ss_pred HHHHHHHHHChHHHHHhH-------HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHH
Confidence 999999876443322222 2355555554431 11357
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC----CCCc------hhHHHH
Q 009647 373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG----EGKP------KLIQEH 442 (530)
Q Consensus 373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~----~~~~------~~~~~~ 442 (530)
|+.|+.++..++...++....++. .++|.++..+.+.+..+|..|+.++..++...... .+.+ ++ ...
T Consensus 350 R~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 427 (1230)
T 1u6g_C 350 RRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP-LTM 427 (1230)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH-HHH
T ss_pred HHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch-HHH
Confidence 999999999998754443444443 47888888888888999999999888776421000 0000 00 011
Q ss_pred HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCc--HHHHHHHHHHHHh
Q 009647 443 LVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHEN--EDLRNMANGLVDK 520 (530)
Q Consensus 443 ~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~--~~i~~~A~~il~~ 520 (530)
+..++ ..+++.+...|.+.++.++..++.+|..++...+.. ....+ ...++.|..+..+++ .+++..+...+..
T Consensus 428 ~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~ 503 (1230)
T 1u6g_C 428 LQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-LTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYV 503 (1230)
T ss_dssp HHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT-TGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh-hHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 11111 335667777799999999999999999988765431 11111 123444555555544 4787777776666
Q ss_pred hc
Q 009647 521 YF 522 (530)
Q Consensus 521 ~f 522 (530)
++
T Consensus 504 ~~ 505 (1230)
T 1u6g_C 504 IL 505 (1230)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.27 E-value=5.3e-09 Score=112.76 Aligned_cols=331 Identities=10% Similarity=0.076 Sum_probs=233.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
.+.+|.+.+++-.+.+...+..++..+-.+...+.+- +.+.+..+.++.+++ ...++-+..++.+++.++++
T Consensus 36 E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~-------s~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e 107 (621)
T 2vgl_A 36 ELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDI-------DFGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSE 107 (621)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCC-------CSCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCC-------chhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcH
Confidence 3456666665212347888888888887776555433 346788888888766 56666688899999987765
Q ss_pred hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhc--CCCChhHHHHHHHHHHHhh
Q 009647 172 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM--LPNKGSTVRTAAWALSNLI 249 (530)
Q Consensus 172 ~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~nL~ 249 (530)
... -++..+.+-|++ +++-++-.|+.+|++|.. ++. ....++++.+++ .+.++.+++.|+.++..++
T Consensus 108 ~~~---L~iN~l~kDl~~-~n~~ir~lALr~L~~i~~--~e~-----~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~ 176 (621)
T 2vgl_A 108 LIR---LINNAIKNDLAS-RNPTFMGLALHCIANVGS--REM-----AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLY 176 (621)
T ss_dssp HHH---HHHHHHHHHHHS-CCHHHHHHHHHHHHHHCC--HHH-----HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHhcCC-CCHHHHHHHHHHhhccCC--HHH-----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 433 256677777877 789999999999999974 332 234678899999 8889999999999999999
Q ss_pred cCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHH----HHhc--CC---
Q 009647 250 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE----RLAT--SN--- 320 (530)
Q Consensus 250 ~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~----lL~~--~~--- 320 (530)
+.. | +.+...++++.+..+|.+.|+.++..|+.++..++..++... ...++.+++ ++.. .+
T Consensus 177 ~~~-p----~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~ 246 (621)
T 2vgl_A 177 RTS-P----DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQD 246 (621)
T ss_dssp HHC-G----GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCST
T ss_pred HhC-h----hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccc
Confidence 742 3 232224889999999999999999999999999997544321 123444443 3321 11
Q ss_pred -------CccchhhhHHHHhhhhcCCc-cccchhcccCCCcchhhHHHHHHHh---------ccCcH--hHHHHHHHHHH
Q 009647 321 -------SLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCL---------KSEHR--VLKKEAAWVLS 381 (530)
Q Consensus 321 -------~~~v~~~al~~L~nl~~~~~-~~~~~~i~~g~~~~~~~l~~L~~lL---------~~~~~--~i~~~A~~~Ls 381 (530)
++..+...++.|+.++..++ .....+. ..++.++..+ ++.+. .|..+|+.++.
T Consensus 247 ~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--------~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~ 318 (621)
T 2vgl_A 247 YTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--------ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLII 318 (621)
T ss_dssp TEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--------HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--------HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHH
Confidence 46678889999999876433 2222222 2444444322 23333 89999999999
Q ss_pred HHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-
Q 009647 382 NIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR- 460 (530)
Q Consensus 382 nl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~- 460 (530)
.+. ..++..+. ++..|..+|.++++.+|.-|+.+|..++... ..+ ..+ ......++..|.
T Consensus 319 ~l~-~~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~----~~~-------~~~--~~~~~~i~~~L~~ 379 (621)
T 2vgl_A 319 HHD-SEPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSE----FSH-------EAV--KTHIETVINALKT 379 (621)
T ss_dssp HHC-CCHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT----TTH-------HHH--HTTHHHHHHHHTT
T ss_pred hcC-CcHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhcc----CcH-------HHH--HHHHHHHHHHhcc
Confidence 985 34443332 4667888899999999999999999998642 111 122 235677888888
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 009647 461 SADIEAARLGLQFMELVL 478 (530)
Q Consensus 461 ~~d~~i~~~~L~~L~~il 478 (530)
++|..+...+|+.|..+.
T Consensus 380 d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 380 ERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp CCCHHHHHHHHHHHHHHC
T ss_pred CCCHhHHHHHHHHHHHHc
Confidence 899999999999988885
No 64
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.23 E-value=3.6e-11 Score=131.29 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=154.0
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhH-hhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPA 257 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~ 257 (530)
.+.++++.|++ ++++.|..|+|+|+||+. ++..|..+...|++.+++ .+|.+++.+++..|+|+|.|||....+..+
T Consensus 35 ~i~Pll~~L~S-~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKS-PDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSS-SCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCC-CCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 45567788887 789999999999999997 689999999999998865 578889999999999999999976444443
Q ss_pred hhHHHhhchHHHHHHHhccCC---------------------HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHH
Q 009647 258 TELIKVDGLLDAILRHLKRAD---------------------EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL 316 (530)
Q Consensus 258 ~~~v~~~~~l~~L~~lL~~~d---------------------~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL 316 (530)
. .+...+++++|..++.... .++..+++++|.+|+.++++....+...+.++.|+..|
T Consensus 113 ~-~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 113 V-HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp H-HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred H-HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 3 3446899999998875211 13556788999999988888888888899999999988
Q ss_pred hcCC--CccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHh
Q 009647 317 ATSN--SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384 (530)
Q Consensus 317 ~~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~ 384 (530)
.... ..+++..|+.+|..++..++...+.+.+.| ....+..+..+..+.+ ..+..+|+++.|+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~---~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQ---ETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCC---SSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcc---hHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 5322 346888999999999999888887777543 1223444554444443 45788999999984
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.04 E-value=5e-10 Score=122.28 Aligned_cols=195 Identities=17% Similarity=0.153 Sum_probs=147.9
Q ss_pred ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH-HHHhccCCHHHHHHHHHHHHHhhc-CCchh
Q 009647 222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI-LRHLKRADEELTTEVAWVVVYLSA-LSNVA 299 (530)
Q Consensus 222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L-~~lL~~~d~~v~~~a~~~L~~L~~-~~~~~ 299 (530)
.|.|++..|+++++..+..|+|+|+||+.+ +. .+..+...++++.+ ..+|.+++.+|+..|+|+|.||+. +..+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~--~~-~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQD--AK-CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTS--HH-HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--cH-HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 466778889999999999999999999964 32 34444456777654 567888999999999999999996 34677
Q ss_pred HHHHHhcCchHHHHHHHhcC------CC--------------ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHH
Q 009647 300 TSLLVKSGVLQLLVERLATS------NS--------------LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIA 359 (530)
Q Consensus 300 ~~~i~~~g~l~~Lv~lL~~~------~~--------------~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~ 359 (530)
+..++..|+++.|..+|... .. ..+...++.+|.+++.+++.....+.. .+.++
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~------~~~l~ 185 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT------KQTIL 185 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT------CHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh------cccHH
Confidence 78889999999999888521 00 112345778888888887776666664 47899
Q ss_pred HHHHHhccC---cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcH---HHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 360 VLVKCLKSE---HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL---ALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 360 ~L~~lL~~~---~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l---~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
.|+.+|.+. ...++..|+.+|.+++..+.+.++.+.+.+.. ..+..+..+. ...+..+++.|.|+.
T Consensus 186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~-~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 186 RLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT-DPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS-CTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC-cHHHHHHHHHHHhHh
Confidence 999988543 35799999999999999999999999887643 3333333333 346788999999974
No 66
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.99 E-value=1.2e-08 Score=100.85 Aligned_cols=305 Identities=11% Similarity=0.145 Sum_probs=182.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHh
Q 009647 107 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAH 186 (530)
Q Consensus 107 d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~l 186 (530)
|+.....++..+-.++..+..-+-.++ ..+.+..+.++.+++ ..+++-....+.+++....+ ++=++..|.+-
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e----~iLv~Nsl~kD 112 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAED----VIIVTSSLTKD 112 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSC----GGGGHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHH----HHHHHHHHHhh
Confidence 666777788888777766654332222 245677778888766 56666677788888865322 23478888888
Q ss_pred hcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhch
Q 009647 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGL 266 (530)
Q Consensus 187 L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~ 266 (530)
+++ +++-++-.|+.+|++|... +.-. .+.+++.+.|.+.++.++++|+.+...|+... ++.+ .++
T Consensus 113 l~~-~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-----pe~v--~~~ 177 (355)
T 3tjz_B 113 MTG-KEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-----FDVV--KRW 177 (355)
T ss_dssp HHS-SCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-----HHHH--HTT
T ss_pred cCC-CcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-----HHHH--HHH
Confidence 988 7899999999999999863 3222 34566778888999999999999999998542 3454 489
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC--CccchhhhHHHHhhhhcCC-cccc
Q 009647 267 LDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN--SLQLLIPVLRSLGNLVAGD-SSTI 343 (530)
Q Consensus 267 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~--~~~v~~~al~~L~nl~~~~-~~~~ 343 (530)
++.+-.++.+.++.++..|+.+|..+...+.. .+..|+..+.... ++..+...++.++.+...+ +...
T Consensus 178 ~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~ 248 (355)
T 3tjz_B 178 VNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD 248 (355)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH
Confidence 99999999999999999999999999864321 3455566564321 4555566777777777655 2222
Q ss_pred chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHH
Q 009647 344 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLG 423 (530)
Q Consensus 344 ~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~ 423 (530)
...++.+..+|+|.++.|..+|++++..+...+.. +. ..++..|..+|.++++.+|..|+..|.
T Consensus 249 -----------~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~ 312 (355)
T 3tjz_B 249 -----------SPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLN 312 (355)
T ss_dssp -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred -----------HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 24677888889999999999999999988542221 11 234667777888999999999999988
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHH
Q 009647 424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQF 473 (530)
Q Consensus 424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~ 473 (530)
.++.. .|+ .+ ..+-.-+.+++.++|..+...|+..
T Consensus 313 ~l~~~------~P~-------~v--~~~n~~ie~li~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 313 KVAMK------HPS-------AV--TACNLDLENLVTDANRSIATLAITT 347 (355)
T ss_dssp --------------------------------------------------
T ss_pred HHHHH------CcH-------HH--HHHHHHHHHHccCCcHhHHHHHHHH
Confidence 88753 121 11 1233456777888887776655443
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.97 E-value=2.7e-07 Score=99.35 Aligned_cols=321 Identities=11% Similarity=0.123 Sum_probs=212.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcH
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP 181 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~ 181 (530)
.+.++|...+.-+--.+..+.. .++ +.++- ++..+..=|.+++ +..+--|+.+|+++.. ++... ..+|
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~--~~~--e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~---~l~~ 149 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVN--SNS--ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE---AFAG 149 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCC--CCH--HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH---HHTT
T ss_pred HhcCCCHHHHHHHHHHHHHHcc--CCc--HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH---HHHH
Confidence 3358888887777777766632 223 21211 3455555666544 5555568999999864 33222 4677
Q ss_pred HHHHhh--cCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647 182 LLIAHL--GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 259 (530)
Q Consensus 182 ~L~~lL--~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 259 (530)
.+.++| .+ +++-||..|+.++.++...+++.. -..+.++.+..+|.++++.++.+|+.++..++... |..
T Consensus 150 ~v~~~l~~~d-~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~-~~~--- 221 (621)
T 2vgl_A 150 EIPKILVAGD-TMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN-PEE--- 221 (621)
T ss_dssp HHHHHHHCSS-SCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-HHH---
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC-hHH---
Confidence 888888 66 789999999999999997555432 22488999999999999999999999999999643 221
Q ss_pred HHHhhchHHHHH----HHhccC-------------CHHHHHHHHHHHHHhhcCC-chhHHHHHhcCchHHHHHHHhcCC-
Q 009647 260 LIKVDGLLDAIL----RHLKRA-------------DEELTTEVAWVVVYLSALS-NVATSLLVKSGVLQLLVERLATSN- 320 (530)
Q Consensus 260 ~v~~~~~l~~L~----~lL~~~-------------d~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~~Lv~lL~~~~- 320 (530)
-...+|.++ +++... ++..+...+..|..++..+ ++....+.+ ++..++..+...+
T Consensus 222 ---~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~k 296 (621)
T 2vgl_A 222 ---FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPK 296 (621)
T ss_dssp ---HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCS
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcc
Confidence 123444444 444321 5788888888888888633 233333322 3444443332111
Q ss_pred -------C--ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHH
Q 009647 321 -------S--LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK 391 (530)
Q Consensus 321 -------~--~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~ 391 (530)
+ ..+...|.+++-.+... ..++ ..++..|..+|.+.++.+|..|+.+|..++...+. .
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~-----~~~~-------~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~ 363 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSE-----PNLL-------VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-H 363 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCC-----HHHH-------HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-H
T ss_pred cccccccchHHHHHHHHHHHHHhcCCc-----HHHH-------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-H
Confidence 2 25666778887777421 1122 24788899999989999999999999999876532 1
Q ss_pred HHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHH
Q 009647 392 QLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLG 470 (530)
Q Consensus 392 ~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~ 470 (530)
..+ . ...+.++..|. +++..++..|+.+|..++.. +.+..+ +..|...+...|.+++..+
T Consensus 364 ~~~-~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~------------~Nv~~I-----v~eL~~yl~~~d~~~~~~~ 424 (621)
T 2vgl_A 364 EAV-K-THIETVINALKTERDVSVRQRAVDLLYAMCDR------------SNAQQI-----VAEMLSYLETADYSIREEI 424 (621)
T ss_dssp HHH-H-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH------------HHHHHH-----HHHHHHHHHHCCHHHHHHH
T ss_pred HHH-H-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh------------hhHHHH-----HHHHHHHHHhcCHHHHHHH
Confidence 222 2 24677888888 89999999999999999752 334333 4456666777787777777
Q ss_pred HHHHHHHHc
Q 009647 471 LQFMELVLR 479 (530)
Q Consensus 471 L~~L~~il~ 479 (530)
+..+..+..
T Consensus 425 v~~I~~la~ 433 (621)
T 2vgl_A 425 VLKVAILAE 433 (621)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.92 E-value=1.4e-07 Score=85.30 Aligned_cols=225 Identities=16% Similarity=0.096 Sum_probs=170.8
Q ss_pred hchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcccc
Q 009647 264 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 343 (530)
Q Consensus 264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~ 343 (530)
.+.+..|..+|+..|+.++.+++.+|..+...-+.......-..+++.+++++ .+.+..+...|++||+.+..+.+-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL-SQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCCCCH
Confidence 35788899999999999999999999999975444444444456899999988 68999999999999999998877655
Q ss_pred chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHH
Q 009647 344 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLG 423 (530)
Q Consensus 344 ~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~ 423 (530)
..+. .+...|..++.+++.-++.+|+-.++-+---+. .. +++..+..++.+.+..++..|..++.
T Consensus 111 ~~y~--------Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~~-----~V~~~l~sLl~Skd~~vK~agl~~L~ 175 (265)
T 3b2a_A 111 KTFL--------KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED--SK-----LVRTYINELVVSPDLYTKVAGFCLFL 175 (265)
T ss_dssp HHHH--------HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--CH-----HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHH--------HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--hH-----HHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 5554 478889999999999999999999998822110 11 24567788889999999999999999
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHH-hchHHHHHHH
Q 009647 424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVER-EDGIDAMERF 502 (530)
Q Consensus 424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~-~ggl~~L~~L 502 (530)
|++..++ .|+ +-.+++.-+-.+|++.|+.++..+|.++..|+...-- ...+.+ .+.+.....|
T Consensus 176 eia~~S~----D~~---------i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~---~~~~~~~~~~~~~v~~l 239 (265)
T 3b2a_A 176 NMLNSSA----DSG---------HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL---ENVKIELLKISRIVDGL 239 (265)
T ss_dssp HHGGGCS----SCC---------CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC---SCCHHHHHHHHHHHHHG
T ss_pred HhhcccC----CHH---------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc---HhHHHHHHHHHHHHHHH
Confidence 9987542 221 1235677788899999999999999999999865311 112222 2333445566
Q ss_pred h-cCCcHHHHHHHHHHHHh
Q 009647 503 Q-FHENEDLRNMANGLVDK 520 (530)
Q Consensus 503 ~-~~~~~~i~~~A~~il~~ 520 (530)
. -.+.+.++.+|..+-+.
T Consensus 240 ~~~~~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 240 VYREGAPIIRLKAKKVSDL 258 (265)
T ss_dssp GGCSSCHHHHHHHHHHHHH
T ss_pred HHhcCChhHHHHHHHHHHH
Confidence 6 56789999998765554
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.76 E-value=4.5e-07 Score=99.42 Aligned_cols=273 Identities=13% Similarity=0.124 Sum_probs=189.8
Q ss_pred HHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCC-------CHHHHHHHHHHHHhhcCC
Q 009647 139 IPVLVQCLAF--GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKS-------SSPVAEQCAWALGNVAGE 209 (530)
Q Consensus 139 v~~Lv~lL~~--~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~-------~~~v~~~a~~~L~nla~d 209 (530)
+..|-.+|.. .+.+.++.-|+.+|+.+..|.... ++..|...|.+.+ ++.++..|+-.||-+...
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G 467 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG 467 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence 4555555542 233556666999999999886531 4567777776522 267888999999988653
Q ss_pred CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHHHH
Q 009647 210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWV 288 (530)
Q Consensus 210 ~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~~~ 288 (530)
+. +. .+++.|..++.+++..+.+.++++|+-+..|... ..++..|+..+ ...++.++..++.+
T Consensus 468 S~--~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn---------~~ai~~LL~~~~e~~~e~vrR~aalg 531 (963)
T 4ady_A 468 SA--NI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK---------PEAIHDMFTYSQETQHGNITRGLAVG 531 (963)
T ss_dssp CC--CH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC---------HHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CC--CH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC---------HHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 32 11 2456677777777666677999999987656421 13344445443 35577899999999
Q ss_pred HHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh-cc
Q 009647 289 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL-KS 367 (530)
Q Consensus 289 L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL-~~ 367 (530)
|+.+.-+.++. ++.+++.|..+.++.++..+..++|--..|... ..+++.|+..+ .+
T Consensus 532 LGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------------~~aIq~LL~~~~~d 589 (963)
T 4ady_A 532 LALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------------NSAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------------HHHHHHHHHHHHHC
T ss_pred HHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------------HHHHHHHHHHhccC
Confidence 99888766544 455666676667888888888888765555432 23566555554 45
Q ss_pred CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH
Q 009647 368 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL 446 (530)
Q Consensus 368 ~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l 446 (530)
.+..+|..|..+|+.|..+.++ .++.++.+| ++.++.+|..|+++|+.++.+ +|.
T Consensus 590 ~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aG------n~~--------- 645 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAG------KGL--------- 645 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS------SCC---------
T ss_pred CcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccC------CCc---------
Confidence 6778999999999999887742 466666644 678999999999999999863 221
Q ss_pred HhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647 447 VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 447 ~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~ 481 (530)
..++..|..++...|..+...|+.+|..|....
T Consensus 646 --~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 646 --QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred --HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 124466778888999999999999999987543
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.65 E-value=3e-07 Score=90.92 Aligned_cols=274 Identities=12% Similarity=0.051 Sum_probs=160.7
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 258 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 258 (530)
..+..++++.+ ++..++.-+.-.+.+++...++. + =++..|.+=++++++-++..|+.+|+++... .
T Consensus 69 lf~~v~kl~~s-~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~--- 135 (355)
T 3tjz_B 69 AFFAMTKLFQS-NDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---T--- 135 (355)
T ss_dssp HHHHHHGGGGC-CCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---T---
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---H---
Confidence 34556678877 78999999999999888753221 1 2466677778889999999999999999743 2
Q ss_pred hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647 259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 338 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 338 (530)
+ ...+.+.+-+.|.+.++-|+..|+.+...|....++.+ .+.+..+-+++ .+.++.++..|+.+|..+...
T Consensus 136 -m--~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 136 -M--LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp -T--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred -H--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence 2 24777889999999999999999999999998666543 26788888888 477888889999999998754
Q ss_pred CccccchhcccCCCcchhhHHHHHHHhccC---cHhHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhcCCChhH
Q 009647 339 DSSTISDVLVPGHGITDQVIAVLVKCLKSE---HRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTSPFDI 414 (530)
Q Consensus 339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~---~~~i~~~A~~~Lsnl~~~~-~~~~~~li~~~~l~~Li~lL~~~~~~v 414 (530)
+. ..+..|+.-+... ++..+-.-+..++.++..+ ++. ...+++.|...|++.++.|
T Consensus 207 d~---------------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aV 266 (355)
T 3tjz_B 207 DR---------------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMV 266 (355)
T ss_dssp CH---------------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHH
T ss_pred ch---------------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHH
Confidence 31 1444455544432 3433333344443443333 121 2346677888889999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhc
Q 009647 415 KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVERED 494 (530)
Q Consensus 415 ~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~g 494 (530)
..||+.+|..+...+ ..+ -..++..|..+|.++|+.++..+|+.|..+....+ ..+..+
T Consensus 267 vyEa~k~I~~l~~~~--------------~~~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-----~~v~~~- 325 (355)
T 3tjz_B 267 VYEAASAIVNLPGCS--------------AKE-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-----SAVTAC- 325 (355)
T ss_dssp HHHHHHHHTC--------------------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------
T ss_pred HHHHHHHHHhccCCC--------------HHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-----HHHHHH-
Confidence 999999999985421 011 13456778888999999999999999988876433 333332
Q ss_pred hHHHHHHHhcCCcHHHHHHHHH
Q 009647 495 GIDAMERFQFHENEDLRNMANG 516 (530)
Q Consensus 495 gl~~L~~L~~~~~~~i~~~A~~ 516 (530)
-..|+.+..++|..|...|.-
T Consensus 326 -n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 326 -NLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp ----------------------
T ss_pred -HHHHHHHccCCcHhHHHHHHH
Confidence 235788889999999988853
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.63 E-value=1.1e-05 Score=70.06 Aligned_cols=213 Identities=14% Similarity=0.194 Sum_probs=164.5
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCch
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPA 257 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~ 257 (530)
.+..++.+|.+ .-..|+.+|+..+.+++...++...-++ ..|+.+++ +....+....+.+++.+++-.
T Consensus 33 ~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~----- 101 (253)
T 2db0_A 33 VLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEK----- 101 (253)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhC-----
Confidence 68889999987 6688999999999999998877655443 34555655 567788888899999998642
Q ss_pred hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647 258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337 (530)
Q Consensus 258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 337 (530)
++.+ .+.+|.+..-..-.|+.++.+...+|..++..+++... +++.-+..++ .+++..=+..|+..++.+.
T Consensus 102 Pe~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~sml-tskd~~Dkl~aLnFi~alG- 172 (253)
T 2db0_A 102 PELV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSML-SSKNREDKLTALNFIEAMG- 172 (253)
T ss_dssp HHHH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHT-SCSSHHHHHHHHHHHHTCC-
T ss_pred HHHH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHh-cCCChHHHHHHHHHHHHHh-
Confidence 3454 58999999999999999999999999999986665433 4566677777 4676555566676666654
Q ss_pred CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647 338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417 (530)
Q Consensus 338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e 417 (530)
+.+...+. -++|.|..+|.+.+.-||..|.-+|.+++.-++.....+. .-+.-+.+.+..+++.
T Consensus 173 --en~~~yv~--------PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~ 236 (253)
T 2db0_A 173 --ENSFKYVN--------PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKT 236 (253)
T ss_dssp --TTTHHHHG--------GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHH
T ss_pred --ccCccccC--------cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHH
Confidence 34444443 5999999999999999999999999999999887555433 3455578888889988
Q ss_pred HHHHHHHhcC
Q 009647 418 VAYVLGNLCV 427 (530)
Q Consensus 418 A~~aL~nl~~ 427 (530)
...+|+.++.
T Consensus 237 V~egL~rl~l 246 (253)
T 2db0_A 237 VKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.60 E-value=1.3e-05 Score=88.01 Aligned_cols=287 Identities=14% Similarity=0.114 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcC--CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC
Q 009647 154 QLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGE--KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 231 (530)
Q Consensus 154 ~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~--~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~ 231 (530)
-++-|+..|+-|-.++.+. ++..|-.+|-. ++++.++.-|+.+||-+...... + ++..|...|.
T Consensus 374 ~k~sA~aSLGlIh~g~~~~------gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~ 439 (963)
T 4ady_A 374 AKFTATASLGVIHKGNLLE------GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIV 439 (963)
T ss_dssp HHHHHHHHHHHHTSSCTTT------HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHH
T ss_pred HHHHHHHHhhhhccCchHH------HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHc
Confidence 3455566666665554432 45555666641 25788999999999999875421 1 4566777776
Q ss_pred CCC--------hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009647 232 PNK--------GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL 303 (530)
Q Consensus 232 ~~~--------~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i 303 (530)
+++ ..++..|+..|+...-|.. ...+++.|..++.+++..+...++.+|+-+-.|+...
T Consensus 440 ~~~~~~~~~~~~~ir~gAaLGLGla~~GS~---------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~---- 506 (963)
T 4ady_A 440 ENSGTSGDEDVDVLLHGASLGIGLAAMGSA---------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP---- 506 (963)
T ss_dssp HHSSCCSCHHHHHHHHHHHHHHHHHSTTCC---------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH----
T ss_pred CccccccccccHHHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH----
Confidence 544 5677888889988776642 1255677888888777766778888887664332211
Q ss_pred HhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHH
Q 009647 304 VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSN 382 (530)
Q Consensus 304 ~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsn 382 (530)
.++..|+..+....+..++..+.-+||.+..+..+ .++.++..|. +.++.+|..++.+++.
T Consensus 507 ---~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------------~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 507 ---EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------------LADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------------GGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------------HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 12344555444455678888899999998877654 3444555554 5788999999999987
Q ss_pred HhcC--CHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHh-h
Q 009647 383 IAAG--SVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFID-L 458 (530)
Q Consensus 383 l~~~--~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~-l 458 (530)
-.+| +.. .+..|++.+ .+.+..+|..|+.+|+.+..+. | ..++.++. +
T Consensus 569 AyaGTGn~~---------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~------~-------------e~v~rlv~~L 620 (963)
T 4ady_A 569 AYAGTGNNS---------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD------Y-------------TTVPRIVQLL 620 (963)
T ss_dssp HTTTSCCHH---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS------C-------------SSHHHHTTTG
T ss_pred HhcCCCCHH---------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC------H-------------HHHHHHHHHH
Confidence 6665 433 344455544 5667889999999999987642 1 12345555 4
Q ss_pred hccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647 459 VRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 459 L~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f 522 (530)
+++.|+.++..+..+|..+.-.-+ . ...++.|..|.++.+..|++-|..-+-...
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~---~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKG---L------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSC---C------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HhcCCHHHHHHHHHHHHHhccCCC---c------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 457899999999889988753211 1 234567888888889999888765555443
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.58 E-value=3.8e-07 Score=86.06 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=139.5
Q ss_pred hhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009647 225 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLL 303 (530)
Q Consensus 225 ~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i 303 (530)
.+...+.+.+...++.++..|..++.+. +...... ...+++.|..++. +.+..++..++.++..|+..-......
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~--~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~- 94 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGE--YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN- 94 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCC--CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCC--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-
Confidence 4777788889999999999999998752 1111111 2367888899995 889999999999999999632222222
Q ss_pred HhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHH
Q 009647 304 VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI 383 (530)
Q Consensus 304 ~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl 383 (530)
+-..+++.++..+ .+.+..++..|..+|.+++.... + ..++|.+...+.+.++.+|..++..|+.+
T Consensus 95 ~~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 95 YASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------L-------EAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------H-------HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 2234788888888 46788899999999999986432 1 24889999999999999999999999996
Q ss_pred hcC-CHHH-HHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 384 AAG-SVEH-KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 384 ~~~-~~~~-~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
... .+.. ....+. .++|.|+.+|.+.++++|..|..+++.++.
T Consensus 161 l~~~~~~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 161 LTRTQPTALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HTTCCGGGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 543 3332 122223 489999999999999999999999999864
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.55 E-value=8.7e-09 Score=87.57 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=93.2
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST 342 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~ 342 (530)
..+.++.+..+|.++++.++..++|+|..+.. . .++.|+.+| .++++.++..|+++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC-----
Confidence 35778889999999999999999999987643 1 257788888 47899999999999999752
Q ss_pred cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647 343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422 (530)
Q Consensus 343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL 422 (530)
...++.|..+|.++++.||..|+|+|+++. .+ ..++.|+.++.++++.++..|+++|
T Consensus 72 ------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 ------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp ------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 247889999999999999999999999984 22 2578899999999999999999998
Q ss_pred HHh
Q 009647 423 GNL 425 (530)
Q Consensus 423 ~nl 425 (530)
.++
T Consensus 129 ~~i 131 (131)
T 1te4_A 129 ETH 131 (131)
T ss_dssp GGC
T ss_pred HhC
Confidence 754
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.55 E-value=1.9e-06 Score=78.05 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=142.1
Q ss_pred CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647 307 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386 (530)
Q Consensus 307 g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~ 386 (530)
+.+..|..+| +..++.++..++.+|+.+...-+....... -..+++.++.++.+.+..+...|+.++..|..+
T Consensus 33 ~~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~------~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 33 RALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMV------LERHLDVFINALSQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHH------HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHH------HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC
Confidence 4677788888 578889999999999999987544333222 136999999999999999999999999999987
Q ss_pred CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHH
Q 009647 387 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466 (530)
Q Consensus 387 ~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i 466 (530)
-+-.-+.+.. +...|.+++.+++.-++.+|+..++-+-.. ++ ..+++..+..++.+.|+++
T Consensus 106 vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~------~~-----------~~~V~~~l~sLl~Skd~~v 166 (265)
T 3b2a_A 106 VPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPL------ED-----------SKLVRTYINELVVSPDLYT 166 (265)
T ss_dssp CCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS------CC-----------CHHHHHHHHHHHTCSSHHH
T ss_pred CCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcc------cc-----------hHHHHHHHHHHHhCCChhH
Confidence 4322222222 456788999999999999999999998221 11 1234566888899999999
Q ss_pred HHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647 467 ARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 524 (530)
Q Consensus 467 ~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~ 524 (530)
+..++.++.+|.....+..... +.++-+..+..|+|+.+.++|..+++..++.
T Consensus 167 K~agl~~L~eia~~S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 167 KVAGFCLFLNMLNSSADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHHHGGGCSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhcccCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999986654432222 2233466678999999999999999998775
No 76
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.51 E-value=5.1e-08 Score=82.75 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=90.7
Q ss_pred cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647 306 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385 (530)
Q Consensus 306 ~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~ 385 (530)
...++.++.+| .++++.++..|+++|+++.. ..++.|+.+|.++++.+|..|+|+|+++..
T Consensus 11 ~~~~~~l~~~L-~~~~~~vR~~A~~~L~~~~~------------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 11 SSGLVPRGSHM-ADENKWVRRDVSTALSRMGD------------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD 71 (131)
T ss_dssp ----------C-CSSCCCSSSSCCSSTTSCSS------------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS
T ss_pred cccHHHHHHHh-cCCCHHHHHHHHHHHHHhCc------------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 45677888888 57899999999999997631 135889999999999999999999999842
Q ss_pred CCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHH
Q 009647 386 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE 465 (530)
Q Consensus 386 ~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~ 465 (530)
+ ..++.|+.+|.++++.||..|+|+|+++.. + ..++.|+.+|+++|+.
T Consensus 72 --~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~-------------~a~~~L~~~l~d~~~~ 119 (131)
T 1te4_A 72 --E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------E-------------RVRAAMEKLAETGTGF 119 (131)
T ss_dssp --H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------H-------------HHHHHHHHHTTSCCTH
T ss_pred --H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------H-------------HHHHHHHHHHhCCCHH
Confidence 2 257889999999999999999999999842 1 2457889999989999
Q ss_pred HHHHHHHHHHH
Q 009647 466 AARLGLQFMEL 476 (530)
Q Consensus 466 i~~~~L~~L~~ 476 (530)
+...+..+|..
T Consensus 120 vr~~A~~aL~~ 130 (131)
T 1te4_A 120 ARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHh
Confidence 99888887754
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.45 E-value=1.2e-06 Score=82.59 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=131.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHH
Q 009647 104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPL 182 (530)
Q Consensus 104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~ 182 (530)
.+.+...+..|+..|..++..........+ ..+++.|...|..+.+..++..|+.++..++.+-.......+ ..+|.
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ 102 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPS 102 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 589999999999999999875221100001 235777888885234466767799999999954222222222 58999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc-hhhHH
Q 009647 183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP-ATELI 261 (530)
Q Consensus 183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~v 261 (530)
++..+.+ ++..+++.|..+|.+++...+ . ..+++.+...+++.++.++..++..|..+.....|.. ....
T Consensus 103 ll~~l~d-~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~- 173 (242)
T 2qk2_A 103 LLEKFKE-KKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL- 173 (242)
T ss_dssp HHHGGGC-CCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH-
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH-
Confidence 9999998 789999999999999987432 2 1257778888998999999999999999654432321 1122
Q ss_pred HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 262 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 262 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
...++|.|..++.+++++++..|..++..++.
T Consensus 174 -l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 174 -LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp -HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999998885
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.3e-06 Score=82.70 Aligned_cols=209 Identities=11% Similarity=0.057 Sum_probs=144.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH-hhcCCchhHHHHHh-cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc-cccc-
Q 009647 269 AILRHLKRADEELTTEVAWVVVY-LSALSNVATSLLVK-SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STIS- 344 (530)
Q Consensus 269 ~L~~lL~~~d~~v~~~a~~~L~~-L~~~~~~~~~~i~~-~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~- 344 (530)
.+...+.+.+..-+..++..|.. ++.+.+.......+ ..++..|...+....+..++..|+.+|+.++.+-. ....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35566788899999999999999 87543221100001 13456677777446777889999999999996543 2222
Q ss_pred hhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHH-HhCCcHHHHHHHhcCCChhHHHHHHHHHH
Q 009647 345 DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI-HSSEALALLLHLLSTSPFDIKKEVAYVLG 423 (530)
Q Consensus 345 ~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~l-i~~~~l~~Li~lL~~~~~~v~~eA~~aL~ 423 (530)
... ..++|.++..+.+.++.|+..+..++.+++...+.....- ++ .+++.|+..|++.++.+|.+++.+|.
T Consensus 100 ~y~-------~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 100 DYV-------SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFN 171 (249)
T ss_dssp HHH-------HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 232 2489999999999889999999999998876431110000 00 26778889999999999999999999
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHH
Q 009647 424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVER 492 (530)
Q Consensus 424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~ 492 (530)
.++.... ..| ++....+...+++.|..++...+++++..+.+++..+....++......+.+
T Consensus 172 ~~~~~~~---~~~----~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 172 ASMKEEK---DGY----STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHCC---SCS----HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHHHHcC---Ccc----hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9986431 111 2233333467899999999999999999999999998876554333333433
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.37 E-value=6.1e-06 Score=78.10 Aligned_cols=192 Identities=11% Similarity=0.062 Sum_probs=138.2
Q ss_pred hHhhcCCCChhHHHHHHHHHHH-hhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHHHHHHHhhcCCc-hhHHH
Q 009647 226 LARMMLPNKGSTVRTAAWALSN-LIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVYLSALSN-VATSL 302 (530)
Q Consensus 226 L~~lL~~~~~~~~~~a~~~L~n-L~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~-~~~~~ 302 (530)
+...+.+++..-+..++-.|.. ++.+. ++.......-..++..|.+.+ .+.+..++..++.+|+.|+.+-. ..+..
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 3455678889999999999999 88652 332100000135678888888 68888999999999999996422 22220
Q ss_pred HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccch-hcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHH
Q 009647 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD-VLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS 381 (530)
Q Consensus 303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~-~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Ls 381 (530)
-+-.-+++.+++.+ .+....++..+..++-.++...+..... .+ ..+++.|...|.+.++.+|.+++.+|+
T Consensus 100 ~y~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l-------~~ll~~l~~~l~~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 100 DYVSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRN-------EDMLKDILEHMKHKTPQIRMECTQLFN 171 (249)
T ss_dssp HHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT-------HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcH-------HHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 11123688888888 4667788888888888888654322111 02 258899999999999999999999999
Q ss_pred HHhcCCH---HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 382 NIAAGSV---EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 382 nl~~~~~---~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
.++.... ......+...++|.|..++.+.+..||..|..+++.++
T Consensus 172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9875443 44444553469999999999999999999999998875
No 80
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.35 E-value=8.7e-05 Score=75.10 Aligned_cols=320 Identities=15% Similarity=0.118 Sum_probs=188.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCC-cHHHH-HHcCCH-HHHHHHhcCCCChHHHHH-HHHHHHHHhcCC
Q 009647 94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFP-PIETA-LKAGAI-PVLVQCLAFGSPDEQLLE-AAWCLTNIAAGK 169 (530)
Q Consensus 94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~-~~~~i-i~~g~v-~~Lv~lL~~~~~~~~~~e-A~~~L~nia~~~ 169 (530)
.-+..++. ...+.+.....+.-+..++...+.. ....+ .+..-. ..+.......+ +..... |..+++.++...
T Consensus 80 ~~~l~lL~--~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~d-d~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 80 IPLIHLLS--TSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGD-FQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp HHHHHHHH--SCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSS-HHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHh--hcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhccc-chHHHHHHHHHHHHHhccC
Confidence 34555555 3456666666777777777653210 22222 332222 22333222223 333334 555555555333
Q ss_pred hhhHHhhcCCcH--HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcC--ChhhhHhhcCC-------------
Q 009647 170 QEETKALLPALP--LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLARMMLP------------- 232 (530)
Q Consensus 170 ~~~~~~i~~~v~--~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~lL~~------------- 232 (530)
....+.+-..+. .++..|...++.+.+..++.+|..+.. .+++|..+.+.+ .+|+++.++..
T Consensus 157 ~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~ 235 (480)
T 1ho8_A 157 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 235 (480)
T ss_dssp TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred CccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence 322222112222 455666653345667789999999988 689999887654 36776554331
Q ss_pred --C--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchH--HHHHHHhcc-CCHHHHHHHHHHHHHhhcCCc----hhHH
Q 009647 233 --N--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL--DAILRHLKR-ADEELTTEVAWVVVYLSALSN----VATS 301 (530)
Q Consensus 233 --~--~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l--~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~----~~~~ 301 (530)
. ...++..++.|++-|+... ....++ ...++. +.|+.+++. ..+.+..-++.+|.|+..... ....
T Consensus 236 ~~~~~~~Ql~Y~~ll~iWlLSF~~--~~~~~l-~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 236 NSNHLGIQLQYHSLLLIWLLTFNP--VFANEL-VQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSH--HHHHHH-HTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHcCH--HHHHHH-HhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1 2456788888998888652 233333 233332 566666664 457899999999999997542 1222
Q ss_pred -HHHhcCchHHHHHHHhcC--CCccchhhhHHHHhhhhcC--------C--------------cccc---------chhc
Q 009647 302 -LLVKSGVLQLLVERLATS--NSLQLLIPVLRSLGNLVAG--------D--------------SSTI---------SDVL 347 (530)
Q Consensus 302 -~i~~~g~l~~Lv~lL~~~--~~~~v~~~al~~L~nl~~~--------~--------------~~~~---------~~~i 347 (530)
.++..++ .+++..|... .|+++. ..+..|...... + +..+ ..+.
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~-edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELR-QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 2333344 4455556422 344432 222332222211 0 1110 1111
Q ss_pred ccCCCcchhhHHHHHHHhcc----------CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647 348 VPGHGITDQVIAVLVKCLKS----------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417 (530)
Q Consensus 348 ~~g~~~~~~~l~~L~~lL~~----------~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e 417 (530)
+ -+..++..|+.+|.+ .++.+..-||.=|+.++...|.....+-+.|+=..+++++.+++++|+.+
T Consensus 391 e----~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~ 466 (480)
T 1ho8_A 391 K----DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYE 466 (480)
T ss_dssp S----GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHH
T ss_pred h----cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence 1 134688999999973 46889999999999999998888887778898888999999999999999
Q ss_pred HHHHHHHhc
Q 009647 418 VAYVLGNLC 426 (530)
Q Consensus 418 A~~aL~nl~ 426 (530)
|+.|+.-+.
T Consensus 467 AL~avQklm 475 (480)
T 1ho8_A 467 ALKATQAII 475 (480)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987664
No 81
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.17 E-value=0.00053 Score=77.72 Aligned_cols=340 Identities=13% Similarity=0.136 Sum_probs=180.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHH-HHhcCCCChHHHHHHHHHHHHHhcCC---h--hhHHhhcC
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV-QCLAFGSPDEQLLEAAWCLTNIAAGK---Q--EETKALLP 178 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv-~lL~~~~~~~~~~eA~~~L~nia~~~---~--~~~~~i~~ 178 (530)
+++++....++.++..+++ -.++..+++.++++.++ .+|.. +..+..|+.||+.+.+.. + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 4556667778888888865 24567788999999999 99863 556566999999998732 1 11112111
Q ss_pred CcHHHHHh---------------h--cCCCCHHHHHHHHHHHHhhcC-------CCchhHHHHHhcCChhhhHhhcCCCC
Q 009647 179 ALPLLIAH---------------L--GEKSSSPVAEQCAWALGNVAG-------EGEEFRNVLLSQGALPPLARMMLPNK 234 (530)
Q Consensus 179 ~v~~L~~l---------------L--~~~~~~~v~~~a~~~L~nla~-------d~~~~r~~~~~~g~i~~L~~lL~~~~ 234 (530)
.++.++.. + .+..+.+.....+..+..+.. ..+..+..+. .++..|+.+-..++
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~~~~d 357 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLSKIEE 357 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhhCCCc
Confidence 11111111 1 111345555555655544432 1122222211 12334444444567
Q ss_pred hhHHHHHHHHHHHhhcC--CCCCchhhHHH--hhchHHHHHHHhccCC-------------------HH---HHHHHHHH
Q 009647 235 GSTVRTAAWALSNLIKG--PDPKPATELIK--VDGLLDAILRHLKRAD-------------------EE---LTTEVAWV 288 (530)
Q Consensus 235 ~~~~~~a~~~L~nL~~~--~~~~~~~~~v~--~~~~l~~L~~lL~~~d-------------------~~---v~~~a~~~ 288 (530)
.++...+.-.-..|+.. ..+. .+.... -...++.+++-+..++ .+ .....--+
T Consensus 358 ~ei~~~tl~FW~~L~~~l~~e~~-~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 358 RELFKTTLDYWHNLVADLFYEPL-KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTT-TGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 77766665443444321 1111 111110 1234444444443322 01 11111133
Q ss_pred HHHhhcC-CchhHHHHHhcCchHHHHHHHhc-CCCccchhhhHHHHhhhhcCCccc-cchhcccCCCcchhhHHHHHHHh
Q 009647 289 VVYLSAL-SNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSST-ISDVLVPGHGITDQVIAVLVKCL 365 (530)
Q Consensus 289 L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~-~~~~i~~g~~~~~~~l~~L~~lL 365 (530)
|.+++.- .++..+. .++.+.+.+.. ..+...+..+++++|.|+.+-+.. ...++ ..+++.|+.++
T Consensus 437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-------~~vi~~Ll~l~ 504 (1023)
T 4hat_C 437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-------VTVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-------HHHHHHHHHhh
Confidence 4444321 1122111 23334444422 245677889999999999776543 22333 35888888888
Q ss_pred cc-----CcHhHHHHHHHHHHHHhcC---CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCch
Q 009647 366 KS-----EHRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPK 437 (530)
Q Consensus 366 ~~-----~~~~i~~~A~~~Lsnl~~~---~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~ 437 (530)
.+ .+..++..+||+++..+.- .++.... ++..|+..+..+++.++..|||++.++|..+.
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~------- 572 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCK------- 572 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT-------
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-------
Confidence 64 3345677889999977542 2232222 34456666666778999999999999986421
Q ss_pred hHHHHHHHHHh------c----CChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC
Q 009647 438 LIQEHLVSLVG------R----GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN 483 (530)
Q Consensus 438 ~~~~~~~~l~~------~----g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~ 483 (530)
..+.. . .++..+...+..-+++-...+.+++..++...++
T Consensus 573 ------~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 573 ------YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp ------HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred ------HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 22221 1 1222333333345666667788888888876653
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.17 E-value=0.00029 Score=79.99 Aligned_cols=340 Identities=13% Similarity=0.075 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhc---------------CCCChHHHHHHHHHHHHHhcCChh--
Q 009647 109 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA---------------FGSPDEQLLEAAWCLTNIAAGKQE-- 171 (530)
Q Consensus 109 ~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~---------------~~~~~~~~~eA~~~L~nia~~~~~-- 171 (530)
..+..+++++..++.... .|.. +...+++.++. |. ..+.++....|+.+|..+......
T Consensus 204 ~~~~~al~~l~~~~~~~~-ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~ 279 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIG-YTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN 279 (971)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred hHHHHHHHHHHHHHhhCC-cCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence 567788888887765311 1222 34556777776 41 112345545589999999975331
Q ss_pred hHHhhcCCcHHHHHhh-------cCCCC---HHHHHHHHHHHHhhcCCCch-hHHHH---------HhcCChhhhHhhcC
Q 009647 172 ETKALLPALPLLIAHL-------GEKSS---SPVAEQCAWALGNVAGEGEE-FRNVL---------LSQGALPPLARMML 231 (530)
Q Consensus 172 ~~~~i~~~v~~L~~lL-------~~~~~---~~v~~~a~~~L~nla~d~~~-~r~~~---------~~~g~i~~L~~lL~ 231 (530)
....+...+|.++.+. .. .+ .+.....+..+..++..... +.+.+ .-...++.|+.+..
T Consensus 280 ~~~~~~~l~~~~~~~~~~~~~~~~~-~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~ 358 (971)
T 2x1g_F 280 YPKTAFVLIKMFLDSLSEITKTEWK-RENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTD 358 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSS-SSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHc
Confidence 1122223444444422 22 33 25666666666655532211 11000 00134555555443
Q ss_pred C-----CChhHHHHHHHHHHHhhcCC-------CCCchhhHHH--hhchHHHHHHHhccCCH---------------HHH
Q 009647 232 P-----NKGSTVRTAAWALSNLIKGP-------DPKPATELIK--VDGLLDAILRHLKRADE---------------ELT 282 (530)
Q Consensus 232 ~-----~~~~~~~~a~~~L~nL~~~~-------~~~~~~~~v~--~~~~l~~L~~lL~~~d~---------------~v~ 282 (530)
. .+..+...+++.+..+++.. .......... ...+++.++..+..++. +.+
T Consensus 359 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 359 KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence 3 36788899999988887510 1111111110 12444555544432211 244
Q ss_pred HHHHHHHHHhhcCCc-hhHHHHHhcCchHHHHHHHhc----CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhh
Q 009647 283 TEVAWVVVYLSALSN-VATSLLVKSGVLQLLVERLAT----SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV 357 (530)
Q Consensus 283 ~~a~~~L~~L~~~~~-~~~~~i~~~g~l~~Lv~lL~~----~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~ 357 (530)
..+.-+|..++.... ..... +++.+-..+.. ..+...+..++.+++.++.+........+ ..+
T Consensus 439 ~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l-------~~l 506 (971)
T 2x1g_F 439 QDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI-------PRL 506 (971)
T ss_dssp HHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH-------HHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH-------HHH
Confidence 556666666664322 11121 12233333321 14566788999999999877544322222 134
Q ss_pred HHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCc
Q 009647 358 IAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKP 436 (530)
Q Consensus 358 l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~ 436 (530)
++.+..+.. +.++.||..+||+++.++..-..+.+.+- .+++.|+..|. +.++..|++++.+++..+.
T Consensus 507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~------ 575 (971)
T 2x1g_F 507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGLN---SSMSAQATLGLKELCRDCQ------ 575 (971)
T ss_dssp HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCH------
T ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHH------
Confidence 553333332 24789999999999988742111111111 25666776672 7899999999999996421
Q ss_pred hhHHHHHHHHHhcCChHHHHhhhcc--CCHHHHHHHHHHHHHHHccC
Q 009647 437 KLIQEHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 437 ~~~~~~~~~l~~~g~i~~L~~lL~~--~d~~i~~~~L~~L~~il~~~ 481 (530)
..+... -..++..|..++.. -+.+....+++++..++...
T Consensus 576 ----~~l~p~-~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 576 ----LQLKPY-ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp ----HHHHHH-HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred ----Hhcccc-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 111111 12456667777776 35777888888888887654
No 83
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.16 E-value=0.0015 Score=66.04 Aligned_cols=324 Identities=13% Similarity=0.112 Sum_probs=191.5
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc---hhHHHHHhcCCh-hhhH-hhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE---EFRNVLLSQGAL-PPLA-RMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~---~~r~~~~~~g~i-~~L~-~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
++..++.+|+...+.++....+-.+.-+..+++ .....+.+..-. ..+. .++..++.-....++.+++.++...
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~- 156 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG- 156 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT-
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC-
Confidence 678899999887889999999999998888765 332333333222 1122 2333344455566666666665332
Q ss_pred CCchhhHHHhhchHH--HHHHHhccC-CHHHHHHHHHHHHHhhcCCchhHHHHHhcC--chHHHHHHHh---cCC-----
Q 009647 254 PKPATELIKVDGLLD--AILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSG--VLQLLVERLA---TSN----- 320 (530)
Q Consensus 254 ~~~~~~~v~~~~~l~--~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g--~l~~Lv~lL~---~~~----- 320 (530)
+. ..+. ....+. .++..|... +.+...-++.+|..|.. .+++...+.+.+ .++.++..+. ++.
T Consensus 157 ~~-~~~~--l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 157 LH-NVKL--VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TC-CHHH--HHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred Cc-cHhH--HHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 22 1222 123333 455555542 34455567888888887 556666665543 3555554332 111
Q ss_pred --------CccchhhhHHHHhhhhcCCccccchhcccCCCcchh--hHHHHHHHhcc-CcHhHHHHHHHHHHHHhcCCH-
Q 009647 321 --------SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ--VIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSV- 388 (530)
Q Consensus 321 --------~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~--~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~- 388 (530)
+.+++-.++-|+--++...+ ....+.. .+ .++.|+.+++. .+..|.+-++.++.|+....+
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~------~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQ------KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHT------TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHh------cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 12335566777766664443 3333322 12 23566676754 467899999999999987652
Q ss_pred ---HHHH-HHHhCCcHHHHHHHhc---CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH---------------
Q 009647 389 ---EHKQ-LIHSSEALALLLHLLS---TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL--------------- 446 (530)
Q Consensus 389 ---~~~~-~li~~~~l~~Li~lL~---~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l--------------- 446 (530)
..+. .++..++ +++++.|. .+|+++...--+....+-..-..- .+ ..++...+
T Consensus 306 ~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~l-ts---fDeY~~El~sG~L~WSP~H~se~ 380 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQEL-TS---FDEYVAELDSKLLCWSPPHVDNG 380 (480)
T ss_dssp THHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTC-CH---HHHHHHHHHHTCCCCCGGGGCHH
T ss_pred hhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhc-cc---HHHHHHHHhcCCcccCCCccchh
Confidence 2233 2333445 45666663 356666544333222221100000 00 01122221
Q ss_pred ---------Hh--cCChHHHHhhhcc----------CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC
Q 009647 447 ---------VG--RGCLSGFIDLVRS----------ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH 505 (530)
Q Consensus 447 ---------~~--~g~i~~L~~lL~~----------~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~ 505 (530)
-+ ..++..|+++|.+ .|+.+..+|+.=|....+..|. ++..+++.||=+.+-+|..|
T Consensus 381 FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~--gr~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 381 FWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp HHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc--hhHHHHHcCcHHHHHHHhcC
Confidence 11 1458899999983 4677888888888888888765 67889999999999999999
Q ss_pred CcHHHHHHHHHHHHhh
Q 009647 506 ENEDLRNMANGLVDKY 521 (530)
Q Consensus 506 ~~~~i~~~A~~il~~~ 521 (530)
+|++|+..|..-++++
T Consensus 459 ~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 459 SDSRVKYEALKATQAI 474 (480)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998777765
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.08 E-value=0.0022 Score=72.65 Aligned_cols=310 Identities=12% Similarity=0.088 Sum_probs=161.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCCC--------CcHHHHHHcCCHHHHHHH-------hcCCCCh--------HHH
Q 009647 99 AVAYHGKGAMQKRVNALRELRRLLSRFEF--------PPIETALKAGAIPVLVQC-------LAFGSPD--------EQL 155 (530)
Q Consensus 99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~--------~~~~~ii~~g~v~~Lv~l-------L~~~~~~--------~~~ 155 (530)
+++.++++++..+..++..+..++...+. +.+..+++ ...|.++++ +.....+ ...
T Consensus 128 L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~ 206 (960)
T 1wa5_C 128 LASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVL 206 (960)
T ss_dssp HHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 44455677888888899988888654321 01111222 235544443 4432211 111
Q ss_pred HHHHHHHHHHhc-CChhhHHhhc-CCcHHHHHhhcCC-----CC---------HHHHHHHHHHHHhhcCCCch-hHHHHH
Q 009647 156 LEAAWCLTNIAA-GKQEETKALL-PALPLLIAHLGEK-----SS---------SPVAEQCAWALGNVAGEGEE-FRNVLL 218 (530)
Q Consensus 156 ~eA~~~L~nia~-~~~~~~~~i~-~~v~~L~~lL~~~-----~~---------~~v~~~a~~~L~nla~d~~~-~r~~~~ 218 (530)
..++.++.++.. +.++.....+ ..++.+.++|... .+ ..++..++.+|..++...+. ++..+
T Consensus 207 ~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~- 285 (960)
T 1wa5_C 207 LVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI- 285 (960)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 224555555542 2222222222 3456667766431 01 24667777777777643221 21111
Q ss_pred hcCChhhhHhhcC-----CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH-----HHHHhcc---------CCH
Q 009647 219 SQGALPPLARMML-----PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA-----ILRHLKR---------ADE 279 (530)
Q Consensus 219 ~~g~i~~L~~lL~-----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~-----L~~lL~~---------~d~ 279 (530)
..+++....++. ..+..++..++-.+..+++.. .....+...+.++. ++..+.- +|+
T Consensus 286 -~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~---~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp 361 (960)
T 1wa5_C 286 -NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP---KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP 361 (960)
T ss_dssp -HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH---HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH
T ss_pred -HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH---hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH
Confidence 123444455443 235677888888888887532 11211111123333 3333320 111
Q ss_pred --------------HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc-----CCCccchhhhHHHHhhhhcCCc
Q 009647 280 --------------ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAGDS 340 (530)
Q Consensus 280 --------------~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~~~ 340 (530)
..+..+..+|..|+....+ .++ ..+++.+...+.. +.+...+..|+.++|.++.+..
T Consensus 362 ~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~ 437 (960)
T 1wa5_C 362 IEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN 437 (960)
T ss_dssp HHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred HHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 2455566666666653221 111 1123333333421 3455677899999999986421
Q ss_pred c---c-c--chhcccCCCcchhh-HHHHHHHhccC---cHhHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhcC
Q 009647 341 S---T-I--SDVLVPGHGITDQV-IAVLVKCLKSE---HRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLST 409 (530)
Q Consensus 341 ~---~-~--~~~i~~g~~~~~~~-l~~L~~lL~~~---~~~i~~~A~~~Lsnl~~~~-~~~~~~li~~~~l~~Li~lL~~ 409 (530)
. . . ...++. ..+ ...+...|.++ ++.+|..|||+++.++..- ++... .+++.+++.|.+
T Consensus 438 ~~~~~~~~~~~~~~l-----~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d 507 (960)
T 1wa5_C 438 ITNAGVSSTNNLLNV-----VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQT 507 (960)
T ss_dssp CBTTBCCCBCTTCCH-----HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTC
T ss_pred cccCCcccccccccH-----HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCC
Confidence 1 0 0 011110 011 22344455666 8899999999999997642 22211 367888888888
Q ss_pred CChhHHHHHHHHHHHhcCC
Q 009647 410 SPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 410 ~~~~v~~eA~~aL~nl~~~ 428 (530)
++..|+..|++||.+++..
T Consensus 508 ~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 508 DEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTC
T ss_pred CChhHHHHHHHHHHHHHhc
Confidence 8899999999999999863
No 85
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.07 E-value=0.00031 Score=61.03 Aligned_cols=216 Identities=16% Similarity=0.178 Sum_probs=153.1
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215 (530)
Q Consensus 136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 215 (530)
..++..++.+|..+- =.+|..|...+.+++...++... +.+..|+-+++.+....+....+.++|-++...|+.-+
T Consensus 31 ~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~e---pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYE---PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHH---HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHH---HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence 446777888887432 24667799999999977665433 35667777776667778878888999999987766443
Q ss_pred HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009647 216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 295 (530)
Q Consensus 216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 295 (530)
+.+|.+..-..-.++.++-+..++|..+++.. | +. ..++..-+..++.++|..=+..++..++-+..+
T Consensus 107 -----~vVp~lfanyrigd~kikIn~~yaLeeIaran-P----~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 107 -----SMIPVLFANYRIGDEKTKINVSYALEEIAKAN-P----ML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp -----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-H----HH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred -----hhHHHHHHHHhcCCccceecHHHHHHHHHHhC-h----HH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 34566776667779999999999999999763 2 23 347778888999988855555555555555443
Q ss_pred CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHH
Q 009647 296 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE 375 (530)
Q Consensus 296 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~ 375 (530)
. ...+ ...+|+|..+| ...+.-++..|..+|++++.-++... .++..-+.=+.+.+.-+++.
T Consensus 175 ~---~~yv--~PfLprL~aLL-~D~deiVRaSaVEtL~~lA~~npklR------------kii~~kl~e~~D~S~lv~~~ 236 (253)
T 2db0_A 175 S---FKYV--NPFLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLR------------KVVIKRLEELNDTSSLVNKT 236 (253)
T ss_dssp T---HHHH--GGGHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCHHHH------------HHHHHHHHHCCCSCHHHHHH
T ss_pred C---cccc--CcchHHHHHHH-cCcchhhhHHHHHHHHHHHHcCHHHH------------HHHHHHHHHhcCcHHHHHHH
Confidence 3 3333 46789999988 57788888999999999998876522 23334445566666777777
Q ss_pred HHHHHHHHhc
Q 009647 376 AAWVLSNIAA 385 (530)
Q Consensus 376 A~~~Lsnl~~ 385 (530)
.-..|+.|+.
T Consensus 237 V~egL~rl~l 246 (253)
T 2db0_A 237 VKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 86
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.00 E-value=0.0019 Score=73.95 Aligned_cols=342 Identities=14% Similarity=0.149 Sum_probs=179.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHH-HHhcCCCChHHHHHHHHHHHHHhcCC--hh---hHHhhcC
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV-QCLAFGSPDEQLLEAAWCLTNIAAGK--QE---ETKALLP 178 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv-~lL~~~~~~~~~~eA~~~L~nia~~~--~~---~~~~i~~ 178 (530)
.++...+..++.++..+++- .+...+++..+++.++ .++. .+.++..|+.||..+.+.. +. ....+..
T Consensus 206 ~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~ 279 (1049)
T 3m1i_C 206 GSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1049)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Confidence 34577888899999888653 2234567778888888 4443 3566667999999998652 11 0111111
Q ss_pred CcHHHHHhh-----------------cCCCCHHHHHHHHHHHHhhcC-------CCchhHHHHHhcCChhhhHhhcCCCC
Q 009647 179 ALPLLIAHL-----------------GEKSSSPVAEQCAWALGNVAG-------EGEEFRNVLLSQGALPPLARMMLPNK 234 (530)
Q Consensus 179 ~v~~L~~lL-----------------~~~~~~~v~~~a~~~L~nla~-------d~~~~r~~~~~~g~i~~L~~lL~~~~ 234 (530)
..+.++..+ ....+.+.....+..+..+.. ..+..+..+ ..+++.++.+...++
T Consensus 280 l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d 357 (1049)
T 3m1i_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEE 357 (1049)
T ss_dssp HHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCc
Confidence 112222211 111234444444444433321 111122222 234666666666777
Q ss_pred hhHHHHHHHHHHHhhc----CCCCCc-hhhHHHhhchHHHHHHHhccCC-------------------H---HHHHHHHH
Q 009647 235 GSTVRTAAWALSNLIK----GPDPKP-ATELIKVDGLLDAILRHLKRAD-------------------E---ELTTEVAW 287 (530)
Q Consensus 235 ~~~~~~a~~~L~nL~~----~~~~~~-~~~~v~~~~~l~~L~~lL~~~d-------------------~---~v~~~a~~ 287 (530)
.++...+.-.+..+++ ...... .... ...+++.++..+..++ . .....+.-
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~--l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~ 435 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEI--CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE 435 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHH--HHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHH--HHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHH
Confidence 7888888766666665 211111 1111 2344555555443211 0 11233455
Q ss_pred HHHHhhcCCchhHHHHHhcCchHHHHHHHhc-CCCccchhhhHHHHhhhhcCCccc-cchhcccCCCcchhhHHHHHHHh
Q 009647 288 VVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSST-ISDVLVPGHGITDQVIAVLVKCL 365 (530)
Q Consensus 288 ~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~-~~~~i~~g~~~~~~~l~~L~~lL 365 (530)
+|.+++....... + .-+.+.+-..+.. +.+...+..+++++|.++.+-... ...++ ..+++.|..+.
T Consensus 436 ~L~~l~~~~~~~~---l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-------~~v~~~l~~l~ 504 (1049)
T 3m1i_C 436 VLVYLTHLNVIDT---E-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-------VTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHCHHHH---H-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-------HHHHHHHHHHT
T ss_pred HHHHHHccCHHHH---H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-------HHHHHHHHHHH
Confidence 5666653222111 0 1122334444421 235566789999999998543322 11112 13555555544
Q ss_pred cc-----CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 009647 366 KS-----EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ 440 (530)
Q Consensus 366 ~~-----~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~ 440 (530)
.. +++.++..+||+++..+.--..+-+.+- .+++.++..+.++++.|+..|++++.++|..+.
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~---------- 572 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK---------- 572 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT----------
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----------
Confidence 32 3445666799999977542111111121 256677888888889999999999999986321
Q ss_pred HHHHHHH--h--------cCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647 441 EHLVSLV--G--------RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482 (530)
Q Consensus 441 ~~~~~l~--~--------~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~ 482 (530)
..+. . ..++..+..++..-+.+-.....+++..++...+
T Consensus 573 ---~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 573 ---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp ---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred ---HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 1221 0 1233334444554455555666777777776554
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.96 E-value=0.0011 Score=73.86 Aligned_cols=297 Identities=11% Similarity=0.117 Sum_probs=195.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC---hhhHHh
Q 009647 99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK---QEETKA 175 (530)
Q Consensus 99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~---~~~~~~ 175 (530)
+++.+...+...+..|+..+..++....... .+..+++..|...+....+. -.|+.++..++... +..--.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~ 92 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPY 92 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccc
Confidence 3333445445666788888888765432111 12236777778877643222 33788888888432 222233
Q ss_pred hcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHhhcCCCC
Q 009647 176 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDP 254 (530)
Q Consensus 176 i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~ 254 (530)
+++.+|.++..+.+ ....|+..|..++..|+.--+...- ..++|.|+..|.+. .......|+.++..|+... |
T Consensus 93 ~~~~~~~~~~~~~d-k~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~ 166 (986)
T 2iw3_A 93 IVQLVPAICTNAGN-KDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-K 166 (986)
T ss_dssp HHTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-H
T ss_pred hHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-H
Confidence 34889999999987 6788999988888777753333221 34588898888754 6889999999999999642 2
Q ss_pred CchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647 255 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333 (530)
Q Consensus 255 ~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~ 333 (530)
... ......++|.+...+.+..+++...+..++..+|.- ++..+ ...+|.|+..+. +++ -...++..|+
T Consensus 167 ~~~--~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~-~p~--~~~~~~~~l~ 236 (986)
T 2iw3_A 167 DQV--ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIA-DPT--EVPETVHLLG 236 (986)
T ss_dssp HHH--HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHH-CTT--HHHHHHHHHT
T ss_pred HHH--HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhc-Chh--hhHHHHHHhh
Confidence 211 112457888888888899999999999998888852 22222 256788998885 443 2455666666
Q ss_pred hhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc--CCHHHHHHHHhCCcHHHHHHHhc-CC
Q 009647 334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLS-TS 410 (530)
Q Consensus 334 nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~--~~~~~~~~li~~~~l~~Li~lL~-~~ 410 (530)
.-+.-.+. +...+. =.+|.|.+-|......+++.++-++.|+|. .++..+..++. .++|.|-.... ..
T Consensus 237 ~~tfv~~v-~~~~l~-------~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~ 307 (986)
T 2iw3_A 237 ATTFVAEV-TPATLS-------IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIA 307 (986)
T ss_dssp TCCCCSCC-CHHHHH-------HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCC
T ss_pred cCeeEeee-cchhHH-------HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccC
Confidence 54432221 111111 145666666666778899999999999997 46665655554 48888888774 57
Q ss_pred ChhHHHHHHHHHHHhc
Q 009647 411 PFDIKKEVAYVLGNLC 426 (530)
Q Consensus 411 ~~~v~~eA~~aL~nl~ 426 (530)
+|++|.-|..|+..+.
T Consensus 308 ~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 308 DPEAREVTLRALKTLR 323 (986)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999988888877773
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.93 E-value=0.0015 Score=74.06 Aligned_cols=298 Identities=8% Similarity=0.018 Sum_probs=167.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHh-------cCCCC--hHHHHHHHHHHHHHhcCChhh----
Q 009647 106 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL-------AFGSP--DEQLLEAAWCLTNIAAGKQEE---- 172 (530)
Q Consensus 106 ~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL-------~~~~~--~~~~~eA~~~L~nia~~~~~~---- 172 (530)
++++.+..|+.++..+++..........+ ..++|.++.+. ..++. ++.....+..+..++......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999998753311111122 12344444422 22232 244445566666665322211
Q ss_pred --------HHhhcCCcHHHHHhhcC----CCCHHHHHHHHHHHHhhcCC---------CchhHHHHHh--cCChhhhHhh
Q 009647 173 --------TKALLPALPLLIAHLGE----KSSSPVAEQCAWALGNVAGE---------GEEFRNVLLS--QGALPPLARM 229 (530)
Q Consensus 173 --------~~~i~~~v~~L~~lL~~----~~~~~v~~~a~~~L~nla~d---------~~~~r~~~~~--~g~i~~L~~l 229 (530)
...+...++.++.+... ..++++...+++.+..++.+ .+..+..+.. ...++.++..
T Consensus 335 ~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 414 (971)
T 2x1g_F 335 ITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK 414 (971)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 12222466677766533 24678999999988887641 1111111111 1344444544
Q ss_pred cCCC-C--------------hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-----CCHHHHHHHHHHH
Q 009647 230 MLPN-K--------------GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-----ADEELTTEVAWVV 289 (530)
Q Consensus 230 L~~~-~--------------~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~-----~d~~v~~~a~~~L 289 (530)
+.-+ + ...++.+.-+|..++... +.. . ...+++.+...+.. .+...++.+++++
T Consensus 415 ~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~-~~~---~--l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l 488 (971)
T 2x1g_F 415 SEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVL-NDY---I--LEILAAMLDEAIADLQRHPTHWTKLEACIYSF 488 (971)
T ss_dssp TSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTC-TTH---H--HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHH-hHH---H--HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 4321 1 134566666777777432 221 1 12344444444443 4567889999999
Q ss_pred HHhhcCCchhHHHHHhcCchHHHHHHHh--c--CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh
Q 009647 290 VYLSALSNVATSLLVKSGVLQLLVERLA--T--SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL 365 (530)
Q Consensus 290 ~~L~~~~~~~~~~i~~~g~l~~Lv~lL~--~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL 365 (530)
+.++++..... ...++.++.++. . ..++.++..+++++|.++..-....+ .+ ..+++.|+..|
T Consensus 489 ~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-------~~vl~~l~~~l 555 (971)
T 2x1g_F 489 QSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-------PPAINLLVRGL 555 (971)
T ss_dssp HHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-------HHHHHHHHHHH
T ss_pred HHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-------HHHHHHHHHHh
Confidence 99998644322 133444444332 1 23677888999999998854222222 22 25788888888
Q ss_pred ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC--ChhHHHHHHHHHHHhcC
Q 009647 366 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--PFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 366 ~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~--~~~v~~eA~~aL~nl~~ 427 (530)
+ +.++..||+++.+++..........++ .++..|..++..+ +.+.+..+..+++.++.
T Consensus 556 -~--~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 556 -N--SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp -H--SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred -C--hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 3 789999999999999755544443333 3667777778763 56788888889888875
No 89
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.87 E-value=0.00091 Score=74.37 Aligned_cols=288 Identities=13% Similarity=0.144 Sum_probs=188.0
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc
Q 009647 196 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK 275 (530)
Q Consensus 196 ~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~ 275 (530)
+..++..+.++.......+ .+..+++..|.+.+.+.... +.|+-++..||+.....+..+.. .-+.+|.++....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~ 105 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY-IVQLVPAICTNAG 105 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH-HHTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc-hHHHHHHHHHHhc
Confidence 3455555655543221111 11225667777777765444 99999999999654333333322 2378899999888
Q ss_pred cCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcc
Q 009647 276 RADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGIT 354 (530)
Q Consensus 276 ~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~ 354 (530)
+.+..|+..|-.++..+... +++.. ..++|.|+..|........+..|+.+++.++...+.+....+
T Consensus 106 dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~------- 173 (986)
T 2iw3_A 106 NKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM------- 173 (986)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-------
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-------
Confidence 88888988888777777653 33222 356899999996555678889999999999976655544333
Q ss_pred hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC--CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC
Q 009647 355 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG--SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG 432 (530)
Q Consensus 355 ~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~--~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~ 432 (530)
..++|.+...+.+.++.|++.|..++..+|.. +.+ + ...+|.|+..+.+++. .-+++..|+.-+...+-
T Consensus 174 ~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~-----~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v- 244 (986)
T 2iw3_A 174 PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-I-----ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV- 244 (986)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-T-----GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC-
T ss_pred cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-h-----hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee-
Confidence 36899999999999999999999999988763 221 1 1468999999988853 34455555554433210
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHH-HhcCCcHHHH
Q 009647 433 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMER-FQFHENEDLR 511 (530)
Q Consensus 433 ~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~-L~~~~~~~i~ 511 (530)
..| .+ .+ .+|.|..-|......+.+++.-.+.|+++...+.....-| --.-++.+++ .....+||++
T Consensus 245 -~~~-----~l-~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r 312 (986)
T 2iw3_A 245 -TPA-----TL-SI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAR 312 (986)
T ss_dssp -CHH-----HH-HH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHH
T ss_pred -cch-----hH-HH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHH
Confidence 011 11 12 2466777788888999999999999999876552111111 1122333443 3456789988
Q ss_pred HHHHHHHHhh
Q 009647 512 NMANGLVDKY 521 (530)
Q Consensus 512 ~~A~~il~~~ 521 (530)
+.|.+.++..
T Consensus 313 ~~~~~a~~~l 322 (986)
T 2iw3_A 313 EVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877666655
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.87 E-value=0.0006 Score=77.27 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=89.3
Q ss_pred hcCCCChHHHHH-HHHHHHHHhcCChhh-HHhhc-CCcHHHHHhhcCC----CCHHHHHHHHHHHHhhcCCCchhHHHHH
Q 009647 146 LAFGSPDEQLLE-AAWCLTNIAAGKQEE-TKALL-PALPLLIAHLGEK----SSSPVAEQCAWALGNVAGEGEEFRNVLL 218 (530)
Q Consensus 146 L~~~~~~~~~~e-A~~~L~nia~~~~~~-~~~i~-~~v~~L~~lL~~~----~~~~v~~~a~~~L~nla~d~~~~r~~~~ 218 (530)
+...+.+...+| ++|+++.|+.+-.+. -...+ .++|.|+.++... +...++..++|++|.++.--....+ .
T Consensus 460 l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~- 537 (1023)
T 4hat_C 460 IDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F- 537 (1023)
T ss_dssp HSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-
T ss_pred hcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-
Confidence 343334677788 799999999775433 33334 6889999988531 2345677888999998752111111 1
Q ss_pred hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHH---------HhhchHHHHHHHhccCCHHHHHHHHHHH
Q 009647 219 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI---------KVDGLLDAILRHLKRADEELTTEVAWVV 289 (530)
Q Consensus 219 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v---------~~~~~l~~L~~lL~~~d~~v~~~a~~~L 289 (530)
=..+++.|+..+..+++.+..+|+|+|.+||.... ...+ ....++..+...+..-+++-...+..++
T Consensus 538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~----~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK----YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT----HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH----HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11234445555666778999999999999997421 1111 0123333344444445667777888888
Q ss_pred HHhhcC
Q 009647 290 VYLSAL 295 (530)
Q Consensus 290 ~~L~~~ 295 (530)
+.+...
T Consensus 614 ~~vi~~ 619 (1023)
T 4hat_C 614 GIIISE 619 (1023)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 888874
No 91
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.83 E-value=4.5e-05 Score=86.62 Aligned_cols=253 Identities=10% Similarity=0.061 Sum_probs=149.4
Q ss_pred HHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcC-----CCCHHHHHHHHHHHHhhcCCCchhHHHHHhc-----CChh
Q 009647 156 LEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGE-----KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-----GALP 224 (530)
Q Consensus 156 ~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~-----~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-----g~i~ 224 (530)
..|..+|..++.... +.++ ..++.+...++. +++...++.|+.++|.++........ -... ...+
T Consensus 379 ~aa~~~L~~l~~~~~---~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 379 RACTDFLKELKEKNE---VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVD 454 (960)
T ss_dssp HHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHH
T ss_pred HHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHH
Confidence 446667777775433 2222 233444444441 25678999999999999853211100 0000 1111
Q ss_pred h----hHhhcCCC---ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc
Q 009647 225 P----LARMMLPN---KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 297 (530)
Q Consensus 225 ~----L~~lL~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~ 297 (530)
. ++..+.++ ++-++..++|+++.++..- ..+. ...++|.+++.|.+++..|+..||++|.+++...+
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~----~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL----TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS----CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC----CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 1 22334455 7899999999999999653 1233 35788999999988888999999999999986311
Q ss_pred -------h-hHHHHH--hcCchHHHHHHHhcCC----CccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHH
Q 009647 298 -------V-ATSLLV--KSGVLQLLVERLATSN----SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVK 363 (530)
Q Consensus 298 -------~-~~~~i~--~~g~l~~Lv~lL~~~~----~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~ 363 (530)
+ ....+. -..+++.|..++...+ .......++.+|+.++....+....+. ..+++.|..
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-------~~l~~~L~~ 601 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-------PQLLAQFIE 601 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-------HHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHH
Confidence 1 011111 1235566666664321 111345777888877654333332232 236666666
Q ss_pred Hhcc-----CcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 364 CLKS-----EHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 364 lL~~-----~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
.+.. .++..+..++-+|+.++.. .++....+. ..++|.+..+|.....+...++..+++.+.
T Consensus 602 ~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 602 IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 5532 3556777788888888765 434444333 347888889887766666666666666554
No 92
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.77 E-value=0.00068 Score=76.85 Aligned_cols=341 Identities=11% Similarity=0.080 Sum_probs=182.6
Q ss_pred hHHHHH-HHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhh
Q 009647 152 DEQLLE-AAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 229 (530)
Q Consensus 152 ~~~~~e-A~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~l 229 (530)
+...+| |+++++.++.+-.+.....+ ..++.+..+ .+ +++.++..++|++|.++..-.... . .-..+++.|+..
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~-~~~~vr~~~~~~l~~~~~~l~~~~-~-~l~~vl~~l~~~ 537 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SI-SNVQLADTVMFTIGALSEWLADHP-V-MINSVLPLVLHA 537 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CC-CSHHHHHHHHHHHHHTHHHHHHCH-H-HHTTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CC-CcHHHHHHHHHHHHHHHHHHHhCH-H-HHHHHHHHHHHH
Confidence 444566 78999999976432111111 233322222 33 478899999999999885211111 1 224678888888
Q ss_pred cCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC--CHHHHHHHHHHHHHhhcCCc-hhHHHHHhc
Q 009647 230 MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSN-VATSLLVKS 306 (530)
Q Consensus 230 L~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~-~~~~~i~~~ 306 (530)
|.+ +.++..|+++|.++|+... ...... ..++++.+..++... +.+.+..+..+++.++...+ +.....+ .
T Consensus 538 l~~--~~V~~~A~~al~~l~~~~~-~~l~p~--~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~ 611 (963)
T 2x19_B 538 LGN--PELSVSSVSTLKKICRECK-YDLPPY--AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-H 611 (963)
T ss_dssp TTC--GGGHHHHHHHHHHHHHHTG-GGCTTT--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-H
T ss_pred hCC--chHHHHHHHHHHHHHHHHH-HHHHhh--HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-H
Confidence 754 7899999999999996421 111111 234555566666642 56788888888988886432 3332222 2
Q ss_pred CchHHHHHHHh---cCC-Cccch---hhhHHHHhhhhcCCcc-------------------ccchhcccCCCcchhhHHH
Q 009647 307 GVLQLLVERLA---TSN-SLQLL---IPVLRSLGNLVAGDSS-------------------TISDVLVPGHGITDQVIAV 360 (530)
Q Consensus 307 g~l~~Lv~lL~---~~~-~~~v~---~~al~~L~nl~~~~~~-------------------~~~~~i~~g~~~~~~~l~~ 360 (530)
.+++.+...+. ... +++.. ..++.+|+.+...-.. ....+.. ....+++.
T Consensus 612 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 687 (963)
T 2x19_B 612 SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV----VLQQVFQL 687 (963)
T ss_dssp HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH----HHHHHHHH
Confidence 34444444442 111 22222 2455666555532110 0011110 01346666
Q ss_pred HHHHhcc--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh----cC-CChhHHHHHHHHHHHhcC--CCCC
Q 009647 361 LVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL----ST-SPFDIKKEVAYVLGNLCV--SPTE 431 (530)
Q Consensus 361 L~~lL~~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL----~~-~~~~v~~eA~~aL~nl~~--~~~~ 431 (530)
+..++.. .+..+...+|.+++.++..-.+... ..+|+++..+ .. ..+ ..+++++.++. +...
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~ 758 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEP 758 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCc
Confidence 6666643 3568899999999987542211111 2344444433 22 222 34455555543 2110
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHhhhc---cCCHHHHHHHHHHHHHHHccCCCCcch-hH-HHHhchHHHHHHHhcCC
Q 009647 432 GEGKPKLIQEHLVSLVGRGCLSGFIDLVR---SADIEAARLGLQFMELVLRGMPNHEGT-KL-VEREDGIDAMERFQFHE 506 (530)
Q Consensus 432 ~~~~~~~~~~~~~~l~~~g~i~~L~~lL~---~~d~~i~~~~L~~L~~il~~~~~~~~~-~~-i~~~ggl~~L~~L~~~~ 506 (530)
... ..+..+. ..++..++.++. ..++++.......+..++..++..... .. +. ..++.+.....+.
T Consensus 759 --~~~----~~~~~~l-~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~--~i~~~~~~~l~~~ 829 (963)
T 2x19_B 759 --AHF----PPIEALF-LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVK--AVFQCAVLALKFP 829 (963)
T ss_dssp --TTC----HHHHHHH-HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHH--HHHHHHHHHTTCS
T ss_pred --chH----HHHHHHH-HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH--HHHHHHHHHcCCC
Confidence 010 1122111 112334444443 246999999999999999766431110 00 11 1233333445688
Q ss_pred cHHHHHHHHHHHHhhcCC
Q 009647 507 NEDLRNMANGLVDKYFGE 524 (530)
Q Consensus 507 ~~~i~~~A~~il~~~f~~ 524 (530)
+.++.+.|...+..++..
T Consensus 830 ~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 830 EAPTVKASCGFFTELLPR 847 (963)
T ss_dssp CHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999998887653
No 93
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.65 E-value=0.0045 Score=59.19 Aligned_cols=297 Identities=12% Similarity=0.150 Sum_probs=175.8
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-c
Q 009647 198 QCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-R 276 (530)
Q Consensus 198 ~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-~ 276 (530)
.+.-.| |+.-+....-|-++..+++..+...++-++.++.+..+..|...+..+. .........+|.+++.+. +
T Consensus 262 R~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks----L~~t~L~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 262 RTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA----LAKTPLENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG----GGTSCCTTHHHHHHHHHHHC
T ss_pred HHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH----HhhccccccchHHHHHhccC
Confidence 334444 4444556778888999999999999999999999999999999885532 112224578999998887 7
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCc-------------cchhhhHHHHhhhhcC-----
Q 009647 277 ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL-------------QLLIPVLRSLGNLVAG----- 338 (530)
Q Consensus 277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~-------------~v~~~al~~L~nl~~~----- 338 (530)
+++++.......|+|.........+..+..|+++.|...+.+++.. .+..+++|++.|+.-.
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~ 416 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTP 416 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCT
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecC
Confidence 7889999999999999987766677778889999888877543321 1344567777766411
Q ss_pred C--------cc--ccchhcccCCCcchhhHHHHHHHhccCcH------hHHHHHHHHHHHHhcCC---HHHHHH----HH
Q 009647 339 D--------SS--TISDVLVPGHGITDQVIAVLVKCLKSEHR------VLKKEAAWVLSNIAAGS---VEHKQL----IH 395 (530)
Q Consensus 339 ~--------~~--~~~~~i~~g~~~~~~~l~~L~~lL~~~~~------~i~~~A~~~Lsnl~~~~---~~~~~~----li 395 (530)
+ .+ |...++ +..++..|+..|+.+.. ++|.......--+.... .+..-. .-
T Consensus 417 NGqr~~~G~~EqQQVckFI------E~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~r 490 (619)
T 3c2g_A 417 NGETKTAGPNEKQQVCKFI------EIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENR 490 (619)
T ss_dssp TSCCCCCCHHHHHHHHGGG------SHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTT
T ss_pred CCccccCChHHHHHHHHHH------HHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhh
Confidence 0 01 112233 24677777777765421 33333333222221110 000000 11
Q ss_pred hCCcHHHHHHHh-----cCCCh-------hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC-
Q 009647 396 SSEALALLLHLL-----STSPF-------DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA- 462 (530)
Q Consensus 396 ~~~~l~~Li~lL-----~~~~~-------~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~- 462 (530)
..+++..+.-.+ +..+. .+.+.+...|..+...+ |.. .+...++ --|..=+++|++.
T Consensus 491 k~NLvGHIciA~sWa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc----~~E---~qVAh~~---YsIsCPLnlLn~nQ 560 (619)
T 3c2g_A 491 KENLIGHICAAYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQC----GAE---KEVAQYS---YSIDCPLNLLNGNQ 560 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHT----TCH---HHHHHTT---TTSCCGGGGGSSCC
T ss_pred hhhhHHHHHHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHh----hhH---HHHHhhe---eeccCchhhhcccc
Confidence 123333333332 11111 12233444444443211 111 0111111 1233335667664
Q ss_pred -CHHHHHHHHHHHHHHHccCCCCcchhHHHHh--chHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 463 -DIEAARLGLQFMELVLRGMPNHEGTKLVERE--DGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 463 -d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~--ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
.|..+.++|..-..|++.++-- .+. ---..++.|.+|.|++|.+.|.+++.+|
T Consensus 561 ~KP~FI~NVL~VcDKILeHcP~~------Ad~W~i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 561 VKPTFIHNVLVVCDKILEHCPTR------ADIWTIDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTH------HHHSCCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred cChHHHHHHHHHHHHHHHhCcch------hccceechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 4778889999999999887631 000 0123577889999999999999999876
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.64 E-value=0.015 Score=65.65 Aligned_cols=335 Identities=12% Similarity=0.114 Sum_probs=183.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhc--CCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcH
Q 009647 104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA--FGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP 181 (530)
Q Consensus 104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~--~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~ 181 (530)
.+.+...+-.++.++..+...-.... ...++.++..|. .++.+.++..++|+++.++.--..+...+-..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~------~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY------SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC------CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh------hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 34566667777777777643321110 123444444442 1134666667999999998532223334447899
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhH----hhcCCC--ChhHHHHHHHHHHHhhcCCCCC
Q 009647 182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA----RMMLPN--KGSTVRTAAWALSNLIKGPDPK 255 (530)
Q Consensus 182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~----~lL~~~--~~~~~~~a~~~L~nL~~~~~~~ 255 (530)
.++..|.+ +.|+..|+++|.++|.+. +..+. ..++.++ .++..+ +...+..+.-+++.++..-.+.
T Consensus 533 ~l~~~l~~---~~V~~~A~~al~~l~~~~---~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~ 604 (963)
T 2x19_B 533 LVLHALGN---PELSVSSVSTLKKICREC---KYDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE 604 (963)
T ss_dssp HHHHHTTC---GGGHHHHHHHHHHHHHHT---GGGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHhCC---chHHHHHHHHHHHHHHHH---HHHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence 99999954 789999999999999643 32222 2344443 444442 5677888888999888542111
Q ss_pred chhhHHHhhchHHHHHHHhc----cC-CHHHHH---HHHHHHHHhhcC----Cch-----------------hHHHHHhc
Q 009647 256 PATELIKVDGLLDAILRHLK----RA-DEELTT---EVAWVVVYLSAL----SNV-----------------ATSLLVKS 306 (530)
Q Consensus 256 ~~~~~v~~~~~l~~L~~lL~----~~-d~~v~~---~a~~~L~~L~~~----~~~-----------------~~~~i~~~ 306 (530)
..... ...+++.+...+. .+ +++... ..+.+|+.+... .+. ..-.-+..
T Consensus 605 ~~~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (963)
T 2x19_B 605 EILKN--LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQ 682 (963)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHH
Confidence 11112 2345555444432 22 444333 344444444321 000 00011222
Q ss_pred CchHHHHHHHhc-CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh----ccCcHhHHHHHHHHHH
Q 009647 307 GVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL----KSEHRVLKKEAAWVLS 381 (530)
Q Consensus 307 g~l~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL----~~~~~~i~~~A~~~Ls 381 (530)
.+.+.+..++.. ..+..+...++++++.++..-..... ..+|.++..+ .... ....+++++
T Consensus 683 ~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----------~~l~~~~~~l~~~~~~~~---~~~~l~l~~ 748 (963)
T 2x19_B 683 QVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----------PMVPQLCEMLGRMYSTIP---QASALDLTR 748 (963)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----------GGHHHHHHHHHHHHHHSC---CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----------ccHHHHHHHHHHHHHcCC---ccHHHHHHH
Confidence 345555555532 23567888999999998743322221 2344444333 2211 124666777
Q ss_pred HHhc--CCH----HHHHHHHhCCcHHHHHHHhc---CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC--
Q 009647 382 NIAA--GSV----EHKQLIHSSEALALLLHLLS---TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG-- 450 (530)
Q Consensus 382 nl~~--~~~----~~~~~li~~~~l~~Li~lL~---~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g-- 450 (530)
.++. +.. ..+..+++. ++..++.++. ...++++......+..++... | ..+....
T Consensus 749 ~li~~f~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~------~-------~~~~~~~~~ 814 (963)
T 2x19_B 749 QLVHIFAHEPAHFPPIEALFLL-VTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRK------P-------DLFLCERLD 814 (963)
T ss_dssp HHHHHHTTCTTTCHHHHHHHHH-HHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHC------G-------GGGGCTTSC
T ss_pred HHHHHhCCCcchHHHHHHHHHH-HHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhC------c-------HHHcCCccc
Confidence 7755 322 233333221 3445555554 245899999988888887532 1 1111122
Q ss_pred ---ChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647 451 ---CLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482 (530)
Q Consensus 451 ---~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~ 482 (530)
+++.++..|+..++.+...+++++..++....
T Consensus 815 ~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 815 VKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 34455666788899999999999999987643
No 95
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.64 E-value=0.00058 Score=65.82 Aligned_cols=189 Identities=15% Similarity=0.094 Sum_probs=132.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhccc
Q 009647 270 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 349 (530)
Q Consensus 270 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~ 349 (530)
++.-|.+.+.+.+..++.-|..+...+......++..+++..|+... .+.+.+.+..+|++++++....+... .++.
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~LM~~v~Gm~-gvvs- 199 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQLMLFVDGML-GVVA- 199 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHHTTSHHHHH-HHHH-
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHHHhcccccc-chhC-
Confidence 44555577788899999999985544677888999999999999988 46788999999999999986643322 2222
Q ss_pred CCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC----------CcHHHHHHHhc---CCChhHHH
Q 009647 350 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS----------EALALLLHLLS---TSPFDIKK 416 (530)
Q Consensus 350 g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~----------~~l~~Li~lL~---~~~~~v~~ 416 (530)
...++..+..++.+....|.+.|...|-+++..++.....+..+ ..+..|+.+|+ +++.+++.
T Consensus 200 ----~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 200 ----HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp ----CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred ----CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 24688999999998888999999999999987665444433321 13778999997 77889998
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC--CHHHHHH
Q 009647 417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--DIEAARL 469 (530)
Q Consensus 417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--d~~i~~~ 469 (530)
.|...|--+..+.. + .....+.+..+-+.|+=..+...+... |++++..
T Consensus 276 ~amtLIN~lL~~ap---d-~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 276 YTVTLINKTLAALP---D-QDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHCS---S-HHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCC---C-hhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 88776655544321 1 000123344555566666666666664 5665543
No 96
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.60 E-value=0.0017 Score=62.57 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=118.9
Q ss_pred HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchh
Q 009647 359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKL 438 (530)
Q Consensus 359 ~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~ 438 (530)
..++.-|.+++...++.+++-|..+...+...+..+++.+++..|+.+...++..++..++.|+.++....
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v--------- 191 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV--------- 191 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH---------
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc---------
Confidence 33455555667777899999999966667789999999999999999999999999999999999997641
Q ss_pred HHHHHHHHH-hcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHH-hc------h---HHHHHHHhc---
Q 009647 439 IQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVER-ED------G---IDAMERFQF--- 504 (530)
Q Consensus 439 ~~~~~~~l~-~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~-~g------g---l~~L~~L~~--- 504 (530)
.-..-++ ....|..+..++.+.+..+++.+|+.|..+....+. +...+.+ .. | ++.|..+..
T Consensus 192 --~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~--~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~ 267 (339)
T 3dad_A 192 --DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN--NAPLFIRAVNSVASTTGAPPWANLVSILEEKN 267 (339)
T ss_dssp --HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTT
T ss_pred --ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc--cchHHHHHHHHhhhccCCCcHHHHHHHHhccC
Confidence 2233444 556888999999999999999999999999877643 2222222 22 2 566655554
Q ss_pred CCcHHHHHHHHHHHHhhcCCCC
Q 009647 505 HENEDLRNMANGLVDKYFGEDY 526 (530)
Q Consensus 505 ~~~~~i~~~A~~il~~~f~~~~ 526 (530)
..+.+++..|..+|.+.|..-+
T Consensus 268 ~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 268 GADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHHHhcCC
Confidence 6799999999999988876533
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.53 E-value=0.0028 Score=71.67 Aligned_cols=310 Identities=17% Similarity=0.140 Sum_probs=165.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh--hhHHhhcCC--c
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ--EETKALLPA--L 180 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~--~~~~~i~~~--v 180 (530)
++++.....++.++..+++ -.++..+++.+.++.+..+|.. +..+..|+.||+.+.+... +....++.. +
T Consensus 204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 4677888899999999976 2456778888999999999974 5676679999999986543 222222221 1
Q ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHhhc-------CCC----chhHHHH--HhcCChhhhHhhcCCCChhHHHHHHHHHH
Q 009647 181 PLLIAHLGE-KSSSPVAEQCAWALGNVA-------GEG----EEFRNVL--LSQGALPPLARMMLPNKGSTVRTAAWALS 246 (530)
Q Consensus 181 ~~L~~lL~~-~~~~~v~~~a~~~L~nla-------~d~----~~~r~~~--~~~g~i~~L~~lL~~~~~~~~~~a~~~L~ 246 (530)
...+.-+.. ..+.++.+..+..+..++ .+. ++.+... .-.+.++.++.++.+++.++...+.-.+.
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~ 357 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS 357 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 111222221 356776655444443322 111 1111111 11357888889998888777766655555
Q ss_pred HhhcC----CCCCchhhHHH--hhchHHHHHHHhccCC------------H----HHHHHHHHHHHHhhc--CCchhHHH
Q 009647 247 NLIKG----PDPKPATELIK--VDGLLDAILRHLKRAD------------E----ELTTEVAWVVVYLSA--LSNVATSL 302 (530)
Q Consensus 247 nL~~~----~~~~~~~~~v~--~~~~l~~L~~lL~~~d------------~----~v~~~a~~~L~~L~~--~~~~~~~~ 302 (530)
.+... .......+... ...+++.+++-+..++ . +.+.+.. .+...+. +.+.....
T Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 358 DLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHH
Confidence 44421 10000111100 1233444443333211 1 2344444 3332222 11111111
Q ss_pred HHhcCchHHHHHHHh--cCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc-----cCcHhHHHH
Q 009647 303 LVKSGVLQLLVERLA--TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-----SEHRVLKKE 375 (530)
Q Consensus 303 i~~~g~l~~Lv~lL~--~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-----~~~~~i~~~ 375 (530)
+.+ -+.+.+-..+. .+.+...++.++.+|+.++.+-......+ ......-..+++.+..++. +.++.|+..
T Consensus 437 ~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~ 514 (980)
T 3ibv_A 437 MYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLL 514 (980)
T ss_dssp HHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHH
T ss_pred HHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 111 01111222221 12245567889999999887643211111 0000012346777777766 678899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh------cCCChhHHHHHHHHHHHhcCCC
Q 009647 376 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLL------STSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 376 A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL------~~~~~~v~~eA~~aL~nl~~~~ 429 (530)
+||+++..+.--.. +...+++++..+ .+++..++..|++++.++|..+
T Consensus 515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 99999987653211 123455555554 3467789999999999998744
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.26 E-value=0.013 Score=59.94 Aligned_cols=249 Identities=12% Similarity=0.090 Sum_probs=161.7
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCc
Q 009647 101 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPAL 180 (530)
Q Consensus 101 ~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v 180 (530)
..|.++.=+.|.-|+-+||.++...... .|.. ...+ . --|+++++-++-+.-
T Consensus 181 ~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLALDRF---------- 232 (800)
T 3oc3_A 181 DNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILVTDKF---------- 232 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBCC----------
T ss_pred HHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHHhccc----------
Confidence 4556889999999999999998765321 1221 1112 1 125666666663321
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL 260 (530)
Q Consensus 181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 260 (530)
-.+.++.--..|||.|+.+||.+ ..-+.- ..++..|+..+..+.-+++..+...|.++. . ...+
T Consensus 233 ---GDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~-D----LL~~- 296 (800)
T 3oc3_A 233 ---NDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK-E----FVED- 296 (800)
T ss_dssp ---BBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG-G----GCCC-
T ss_pred ---cccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH-H----HHHH-
Confidence 11222222357999999999998 543332 344555555556778899999999999982 1 1111
Q ss_pred HHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccch-hhhHHHHhhhhcCC
Q 009647 261 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL-IPVLRSLGNLVAGD 339 (530)
Q Consensus 261 v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~-~~al~~L~nl~~~~ 339 (530)
..+++|.++..|.+.|++|+..|+.+|.-++ .++... .++..+-+.|.+.++.+.. .+.+..|+.+++.+
T Consensus 297 --Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p 367 (800)
T 3oc3_A 297 --KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYREN 367 (800)
T ss_dssp --HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCC
Confidence 3578899999999999999999999999998 233332 2345566666544443333 35677788887766
Q ss_pred ccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH-HHhcCCChhHHHHH
Q 009647 340 SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL-HLLSTSPFDIKKEV 418 (530)
Q Consensus 340 ~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li-~lL~~~~~~v~~eA 418 (530)
.... . ....+|.|.+++.|.-.+||+.+..++..+. ... ++..+. ++|-..+.+++..+
T Consensus 368 ~~a~---~------dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS 427 (800)
T 3oc3_A 368 PELS---I------PPERLKDIFPCFTSPVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMA 427 (800)
T ss_dssp TTCC---C------CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHH
T ss_pred cccc---c------ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHH
Confidence 3211 1 2369999999999999999999999998876 211 233333 34556677777766
Q ss_pred HHHH
Q 009647 419 AYVL 422 (530)
Q Consensus 419 ~~aL 422 (530)
..+-
T Consensus 428 ~~VW 431 (800)
T 3oc3_A 428 IKLL 431 (800)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.99 E-value=0.25 Score=56.00 Aligned_cols=339 Identities=12% Similarity=0.117 Sum_probs=174.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHH-HHHhcCCCChHHHHHHHHHHHHHhcCChh-hHHhh---c-C
Q 009647 105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVL-VQCLAFGSPDEQLLEAAWCLTNIAAGKQE-ETKAL---L-P 178 (530)
Q Consensus 105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~L-v~lL~~~~~~~~~~eA~~~L~nia~~~~~-~~~~i---~-~ 178 (530)
+++++....++.+++.+++= .++..+++.++++.+ ..+|. .+..+-.|+.||+.|.+...+ ....+ . .
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 46677777788888888652 345778899999988 47775 356666699999999875321 11111 1 1
Q ss_pred CcHHHHHhhc------------CCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc-C-------ChhhhHhhcCCCChhHH
Q 009647 179 ALPLLIAHLG------------EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-G-------ALPPLARMMLPNKGSTV 238 (530)
Q Consensus 179 ~v~~L~~lL~------------~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g-------~i~~L~~lL~~~~~~~~ 238 (530)
.+..+-.++. ...+.+.....+..+..+.. .....+... + ++..|+.+-..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e---~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLK---EHGQLLEKRLNLREALMEALHYMLLVSEVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHH---HHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHH---HHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHH
Confidence 2211212221 11223444444445544432 222222221 1 23334444456788887
Q ss_pred HHHHHHHH----HhhcCCC----CC-----------chhhHHHhhchHHHHHHHh----ccCCH----------------
Q 009647 239 RTAAWALS----NLIKGPD----PK-----------PATELIKVDGLLDAILRHL----KRADE---------------- 279 (530)
Q Consensus 239 ~~a~~~L~----nL~~~~~----~~-----------~~~~~v~~~~~l~~L~~lL----~~~d~---------------- 279 (530)
+.+.-.-. .|..... .. +.+..+ -.+++..|..++ ..+++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~-y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQL-YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHT-THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHH-HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 77654433 3332110 01 011110 123333333322 21110
Q ss_pred ----H--HHHHHHHHHHHhhcCC-chhHHHHHhcCchHHHHHHHhcC-CCccchhhhHHHHhhhhcCCcc-ccchhcccC
Q 009647 280 ----E--LTTEVAWVVVYLSALS-NVATSLLVKSGVLQLLVERLATS-NSLQLLIPVLRSLGNLVAGDSS-TISDVLVPG 350 (530)
Q Consensus 280 ----~--v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~~Lv~lL~~~-~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~g 350 (530)
+ +....--+|.+++.-. .+.... ..+.+-+.+..+ .+...+..+|+++|.|+..-.. ....++
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L--- 519 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL--- 519 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH---
T ss_pred hhcchHHHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH---
Confidence 0 1111222344444311 222221 234444444221 2456678999999999843322 122222
Q ss_pred CCcchhhHHHHHHHhccC-----cHhHHHHHHHHHHHHhcC---CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647 351 HGITDQVIAVLVKCLKSE-----HRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422 (530)
Q Consensus 351 ~~~~~~~l~~L~~lL~~~-----~~~i~~~A~~~Lsnl~~~---~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL 422 (530)
..+++.|+.+..+. +..++...||++|..+.- .++.... ++..|+..+...++.|+..||.|+
T Consensus 520 ----p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af 590 (1073)
T 3gjx_A 520 ----VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTF 590 (1073)
T ss_dssp ----HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHH
T ss_pred ----HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 25777777777654 335667788999876543 3333332 455677777888899999999999
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHHHh--cC----ChHHHHhh----hccCCHHHHHHHHHHHHHHHccCCC
Q 009647 423 GNLCVSPTEGEGKPKLIQEHLVSLVG--RG----CLSGFIDL----VRSADIEAARLGLQFMELVLRGMPN 483 (530)
Q Consensus 423 ~nl~~~~~~~~~~~~~~~~~~~~l~~--~g----~i~~L~~l----L~~~d~~i~~~~L~~L~~il~~~~~ 483 (530)
..+|..+. ..++. .| .+..+++. ...-+++-+....+++..++...+.
T Consensus 591 ~~i~~~C~-------------~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~ 648 (1073)
T 3gjx_A 591 IKIAQKCR-------------RHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTD 648 (1073)
T ss_dssp HHHHHHTG-------------GGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHH-------------HHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Confidence 99987542 11211 11 22222222 2223466666677888888876654
No 100
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.95 E-value=0.11 Score=59.26 Aligned_cols=111 Identities=13% Similarity=0.183 Sum_probs=67.4
Q ss_pred HHHHHHHhc--cCcHhHHHHHHHHHHHHhcCCHHHH-HHHHhCCcHHHHHHHhcC-----CChhHHHHHHHHHHHhcCCC
Q 009647 358 IAVLVKCLK--SEHRVLKKEAAWVLSNIAAGSVEHK-QLIHSSEALALLLHLLST-----SPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 358 l~~L~~lL~--~~~~~i~~~A~~~Lsnl~~~~~~~~-~~li~~~~l~~Li~lL~~-----~~~~v~~eA~~aL~nl~~~~ 429 (530)
++.+...+. +.+...+..|+|+++.++.+..... ..++. .+++.|..+... +.+.++..++|+++.++.--
T Consensus 453 ~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~ 531 (1049)
T 3m1i_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFL 531 (1049)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence 334444443 2456788999999999976533221 12111 245555554432 23445657999999875310
Q ss_pred CCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647 430 TEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481 (530)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~ 481 (530)
..+-.++ ..+++.++..+..+++.+...|..++.++++.+
T Consensus 532 ----------~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 532 ----------KAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp ----------HHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ----------HhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 0111122 135667777888888999999999999998754
No 101
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.92 E-value=0.076 Score=59.93 Aligned_cols=339 Identities=13% Similarity=0.081 Sum_probs=177.2
Q ss_pred hHHHHH-HHHHHHHHhcCChhhHHhh------c-CCcHHHHHhhc----CCCCHHHHHHHHHHHHhhcCCCchhHHHHHh
Q 009647 152 DEQLLE-AAWCLTNIAAGKQEETKAL------L-PALPLLIAHLG----EKSSSPVAEQCAWALGNVAGEGEEFRNVLLS 219 (530)
Q Consensus 152 ~~~~~e-A~~~L~nia~~~~~~~~~i------~-~~v~~L~~lL~----~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~ 219 (530)
+....| |+.+|..++.+-......+ . ..++.+..++. ..+++.|+..++|+++..+..-.. .
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~ 529 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------E 529 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------C
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------C
Confidence 455577 7889899886543222111 1 13445555544 137899999999999999864322 2
Q ss_pred cCChhhhHhhcC------CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-----CCH--------H
Q 009647 220 QGALPPLARMML------PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-----ADE--------E 280 (530)
Q Consensus 220 ~g~i~~L~~lL~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~-----~d~--------~ 280 (530)
...+++++..+- +++..++..|+.++.++|+...+.... . ...++..+-.+|.. .++ +
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~-~--~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN-Y--TESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS-S--HHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh-H--HHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 245566555443 467889999999999999764322111 1 11233333333431 111 1
Q ss_pred --------HHHHHHHHHHHhhc---CCchhHHHHHhcCchHHHHHHHh----cCCCc-c---chhhhHHHHhhhhcCCcc
Q 009647 281 --------LTTEVAWVVVYLSA---LSNVATSLLVKSGVLQLLVERLA----TSNSL-Q---LLIPVLRSLGNLVAGDSS 341 (530)
Q Consensus 281 --------v~~~a~~~L~~L~~---~~~~~~~~i~~~g~l~~Lv~lL~----~~~~~-~---v~~~al~~L~nl~~~~~~ 341 (530)
-+.....+++.|.. .+.+.....+ ..+++.++.-+. ..... . .....+.++|.++.+-..
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l-~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~ 685 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYC-DSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA 685 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHH-HHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence 13334444555542 1233322222 234455444332 11111 1 122567788888876432
Q ss_pred cc------chhcccCCCcchhhHHHHHHHhc--cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-CCCh
Q 009647 342 TI------SDVLVPGHGITDQVIAVLVKCLK--SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPF 412 (530)
Q Consensus 342 ~~------~~~i~~g~~~~~~~l~~L~~lL~--~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-~~~~ 412 (530)
.. ..++ ..+++.+...|. ..+..||..++.++..+...-...+ ...+|.++..+- +-+.
T Consensus 686 ~~~~~~p~~~~f-------~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~-----~p~lp~~i~~ll~~~~~ 753 (980)
T 3ibv_A 686 RGSEEVAWLASF-------NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM-----LPKVPQLISILLNSIDM 753 (980)
T ss_dssp CC-CCCSHHHHH-------HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH-----TTTHHHHHHHHHHHCCT
T ss_pred ccCCCCcHHHHH-------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH-----HHHHHHHHHHHHhcCCH
Confidence 21 1111 246666666665 4577999999999999987654432 236777777653 3244
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC---------HHHHHHHHHHHHHHHccCCC
Q 009647 413 DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD---------IEAARLGLQFMELVLRGMPN 483 (530)
Q Consensus 413 ~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d---------~~i~~~~L~~L~~il~~~~~ 483 (530)
.--...+|.++.++..-. .. +...+..+.. -++..+..+|..++ ..+.+.-+.+|..|+...-.
T Consensus 754 ~e~~~fL~l~~qli~~f~---~~---~~~~l~~ll~-~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~ 826 (980)
T 3ibv_A 754 NELVDVLSFISQLIHIYK---DN---MMEITNRMLP-TLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFG 826 (980)
T ss_dssp TTHHHHHHHHHHHHHHTT---TT---SHHHHHHHHH-HHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHH-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 455678888888875321 11 0122222221 13445555666432 22555556677777653211
Q ss_pred CcchhHHHH--hchH----HHHHHH-hcCCcHHHHHHHHHHHHhhc
Q 009647 484 HEGTKLVER--EDGI----DAMERF-QFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 484 ~~~~~~i~~--~ggl----~~L~~L-~~~~~~~i~~~A~~il~~~f 522 (530)
...+-+ .+-+ ..|... ..++++..++.|..++.++.
T Consensus 827 ---~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v 869 (980)
T 3ibv_A 827 ---SILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMV 869 (980)
T ss_dssp ---GGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred ---hhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 111112 1222 233222 23467889999988888763
No 102
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.85 E-value=0.12 Score=49.67 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=147.9
Q ss_pred HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC--CchhhHHH-hhchHHHHHHHhccCCHHHHHHHHHHHHH
Q 009647 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPATELIK-VDGLLDAILRHLKRADEELTTEVAWVVVY 291 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~v~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 291 (530)
..+...+.+..|+..|..=+.+.++.++-.++++.+.... .+..+.+. ...++..|++.- +++++...+-..|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHH
Confidence 3455667888888888888899999999999999886422 12223332 123333333333 345666666666666
Q ss_pred hhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh
Q 009647 292 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 371 (530)
Q Consensus 292 L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~ 371 (530)
+.. .+.....++..+.+..+.+++ ..++-++...|..++.-+.+.........+..- -..++..+..||.+++.-
T Consensus 150 cir-~e~la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n---yd~Ff~~y~~Ll~S~NYV 224 (341)
T 1upk_A 150 CIR-HEPLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH---YDRFFSEYEKLLHSENYV 224 (341)
T ss_dssp HHT-SHHHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHHHHHHHHHHTTCSSHH
T ss_pred HHH-hHHHHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh---HHHHHHHHHHHhcCCcch
Confidence 665 566667778888888888888 578889999999999988877654443443210 124677888899999999
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHh-CCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647 372 LKKEAAWVLSNIAAG--SVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 429 (530)
Q Consensus 372 i~~~A~~~Lsnl~~~--~~~~~~~li~-~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 429 (530)
+|+.+...|+.|... +.......+. ..-+..++.+|++.+..+|.||--+.--++.++
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999999999999764 2233333333 345888999999999999999999998888765
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.016 Score=55.23 Aligned_cols=188 Identities=14% Similarity=0.142 Sum_probs=120.7
Q ss_pred HHHHHhcCCCccchhhhHHHHhhhhcCCcccc--chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC--
Q 009647 312 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTI--SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-- 387 (530)
Q Consensus 312 Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~--~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~-- 387 (530)
+-+.| .|.+...+..|+..|..+........ ...+.. -....+.+...+.+.+..+...++-++..++...
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~----~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQI----YWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CC----TTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHH----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 44566 58888999999999988875543211 111100 0135666778888899999999999999887532
Q ss_pred ----HHHHHHHHhCCcHHHHHHH-hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC
Q 009647 388 ----VEHKQLIHSSEALALLLHL-LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA 462 (530)
Q Consensus 388 ----~~~~~~li~~~~l~~Li~l-L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~ 462 (530)
.......+ ..++|.|+.- +.++...++..|..++..++.... .+ .. +++.+...+..+
T Consensus 89 ~~~~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----~~----~~--------~~e~l~~~l~~K 151 (278)
T 4ffb_C 89 SSLKNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----SI----TQ--------SVELVIPFFEKK 151 (278)
T ss_dssp --CCHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----SS----HH--------HHHHHGGGGGCS
T ss_pred hhcccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----cH----HH--------HHHHHHHHHhcc
Confidence 11122222 2367777764 788888899888888877764321 11 11 235677788999
Q ss_pred CHHHHHHHHHHHHHHHccC-CCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647 463 DIEAARLGLQFMELVLRGM-PNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522 (530)
Q Consensus 463 d~~i~~~~L~~L~~il~~~-~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f 522 (530)
+|+++..++..|..++... ......+... ...+..+-.+..|.|++|++.|..++-.+|
T Consensus 152 npkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 152 LPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999999999988642 2211111110 112334666789999999999988875544
No 104
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.018 Score=54.90 Aligned_cols=191 Identities=15% Similarity=0.090 Sum_probs=124.3
Q ss_pred ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh-HH-HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCch-
Q 009647 222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE-LI-KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV- 298 (530)
Q Consensus 222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~-~v-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~- 298 (530)
-+| |-.-|.+.+...+..+.-.|..+..........+ .+ .-....+.+-+.+.+.+..++..++.++..++.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 355 5677888899999999998888775421111111 11 0124456677788888899999999999888753211
Q ss_pred ----hHHHHHhcCchHHHHHH-HhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH
Q 009647 299 ----ATSLLVKSGVLQLLVER-LATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 373 (530)
Q Consensus 299 ----~~~~i~~~g~l~~Lv~l-L~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~ 373 (530)
......-..+++.|++- | .+....++..++.++-.++...... ..+++.+...+.+.++.++
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~~~------------~~~~e~l~~~l~~Knpkv~ 156 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDTSI------------TQSVELVIPFFEKKLPKLI 156 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSSSS------------HHHHHHHGGGGGCSCHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcCcH------------HHHHHHHHHHHhccCHHHH
Confidence 11111223466777765 4 4566677788888887776433211 1366778888999999999
Q ss_pred HHHHHHHHHHhcC--CH-HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 374 KEAAWVLSNIAAG--SV-EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 374 ~~A~~~Lsnl~~~--~~-~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
.+++..|..+... .. ......+. .+++.+..+|.+.++.||.+|..++..+..
T Consensus 157 ~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 157 AAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9999888887532 11 11122222 255677888999999999999999988754
No 105
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.48 E-value=0.036 Score=51.34 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=102.7
Q ss_pred cHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC-CchhHHH---HH
Q 009647 369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG-KPKLIQE---HL 443 (530)
Q Consensus 369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~-~~~~~~~---~~ 443 (530)
+.....+++.||..|.. +......++.+ +.+..|...|.++.+.+++.|+..|+-+|..+.+ .| .. .+.+ +.
T Consensus 67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~-~G~~~-~VL~Al~~~ 143 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQP-EDMNE-RVLEAMTER 143 (233)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSS-SCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCC-CChHH-HHHHHHHHH
Confidence 34677888999998865 45666666654 6889999999999999999999999888875421 13 21 1111 11
Q ss_pred HHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcc----hhHHHHhchHHHHHHHhcCCcHHHHHHHH
Q 009647 444 VSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNMAN 515 (530)
Q Consensus 444 ~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~----~~~i~~~ggl~~L~~L~~~~~~~i~~~A~ 515 (530)
...-+..-..++++.|.. .+.+....++..+..++...++-.. +..+..+|-.+.|+.|...+++++..+-.
T Consensus 144 ~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 144 AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp HHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 122234567778888874 6678888899999998877655332 35666888888999999999998876654
No 106
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.22 E-value=0.92 Score=43.57 Aligned_cols=188 Identities=15% Similarity=0.135 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHH
Q 009647 282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361 (530)
Q Consensus 282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L 361 (530)
...+.-. .+|.-.+...++-++..+++..+.-.. ..++.++...-+..|-..+... .-..... ...+|.+
T Consensus 260 vtR~FDL-L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak---sL~~t~L-----~e~LPFi 329 (619)
T 3c2g_A 260 IIRTFDL-LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK---ALAKTPL-----ENILPFL 329 (619)
T ss_dssp HHHHHHH-HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG---GGGTSCC-----TTHHHHH
T ss_pred HHHHHHH-HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH---HHhhccc-----cccchHH
Confidence 3344444 455545667788888888898888777 5778788777777777665332 2222221 3588988
Q ss_pred HHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC-------CChhHHHHHHHHHHHhcC------
Q 009647 362 VKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-------SPFDIKKEVAYVLGNLCV------ 427 (530)
Q Consensus 362 ~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~-------~~~~v~~eA~~aL~nl~~------ 427 (530)
++.+. |++.+|.......|||..++........+..|+++.|-..+.. .+..-++.||..++|...
T Consensus 330 ~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL 409 (619)
T 3c2g_A 330 LRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL 409 (619)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence 88884 6778999999999999999997777778899999999887633 233456677777777532
Q ss_pred ---CCCCCCC----CchhHHHHHHHHHhcCChHHHHhhhccCC------HHHHHHHHHHHHHHHcc
Q 009647 428 ---SPTEGEG----KPKLIQEHLVSLVGRGCLSGFIDLVRSAD------IEAARLGLQFMELVLRG 480 (530)
Q Consensus 428 ---~~~~~~~----~~~~~~~~~~~l~~~g~i~~L~~lL~~~d------~~i~~~~L~~L~~il~~ 480 (530)
-+..+|. .+.+ ++|+..+++..+++.|...|.... -++....|+.+..+++.
T Consensus 410 MmWIPm~NGqr~~~G~~E-qQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRT 474 (619)
T 3c2g_A 410 MMWIPTPNGETKTAGPNE-KQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRT 474 (619)
T ss_dssp GGGSCCTTSCCCCCCHHH-HHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTC
T ss_pred eEEEecCCCccccCChHH-HHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcC
Confidence 1111111 1222 356777888899999999988643 25566777777777763
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.99 E-value=0.076 Score=48.48 Aligned_cols=180 Identities=13% Similarity=0.039 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
.+.++.+-+..+..+ ......++..+++-++ . ...++..-.+.+ ++.++.++-|+..|+.. ....
T Consensus 38 ~~~~~~~~~~~~~~g-f~~~~~~a~~~~~~~~------~-----~~~~~la~~L~~-~~~deVR~~Av~lLg~~-~~~~- 102 (240)
T 3l9t_A 38 YVARLEKDFSLIEHG-FKEEEQRALTDYKSND------G-----EYIKKLAFLAYQ-SDVYQVRMYAVFLFGYL-SKDK- 102 (240)
T ss_dssp HHHHHHHHHTC------CHHHHHHHHHHHHSC------H-----HHHHHHHHHHHT-CSSHHHHHHHHHHHHHT-TTSH-
T ss_pred HHHHHHHHHHHhhcc-cHHHHHHHHHHHHhCC------H-----HHHHHHHHHHHh-CcchHHHHHHHHHHHhc-cCcH-
Confidence 344444433322222 3345566666666432 1 112333344444 45577877888888877 3111
Q ss_pred hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcC-CCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647 172 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAG-EGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 250 (530)
Q Consensus 172 ~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~-d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 250 (530)
..++.+...+...++-.|++.++-+++.++. .+++ ..++.+.....+++..+++.|+-.+.-.|.
T Consensus 103 ------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~ 168 (240)
T 3l9t_A 103 ------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTN 168 (240)
T ss_dssp ------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGG
T ss_pred ------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhc
Confidence 2455555534444789999999999999984 3333 156778888899999999999887755443
Q ss_pred CCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 009647 251 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK 305 (530)
Q Consensus 251 ~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~ 305 (530)
....+.. -..++|.|-.+..+++.-|+..+.|.|..++..+++.+..+++
T Consensus 169 ~~~~k~d-----p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 169 RPYFKEN-----PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp STTTTTC-----HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhhcC-----HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 2111111 2356777888888888889999999999999987776665554
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.98 E-value=0.11 Score=48.73 Aligned_cols=134 Identities=11% Similarity=0.103 Sum_probs=93.3
Q ss_pred CCCccchhhhHHHHhhhhcC---Cc-cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-CHHHHHH
Q 009647 319 SNSLQLLIPVLRSLGNLVAG---DS-STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQL 393 (530)
Q Consensus 319 ~~~~~v~~~al~~L~nl~~~---~~-~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~-~~~~~~~ 393 (530)
+++..+...++.+|..+... .+ .....-. .-++|.|+.-+.+.+..+|..+-.++..+..- ++.
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-------~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~---- 166 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEV-------SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---- 166 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-------HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----
Confidence 45666666666666665421 11 1111111 24899999999999888988877777655431 211
Q ss_pred HHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh---HHHHhhhccCCHHHHHHH
Q 009647 394 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL---SGFIDLVRSADIEAARLG 470 (530)
Q Consensus 394 li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i---~~L~~lL~~~d~~i~~~~ 470 (530)
.+++.+.+-+.+.+..+|.+++..+..+.... |.+ ....+ +.+..++.+.|..+...|
T Consensus 167 ----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~----G~~-----------~~~~l~~~~~ia~ll~D~d~~VR~aA 227 (266)
T 2of3_A 167 ----KMTPMLLDALKSKNARQRSECLLVIEYYITNA----GIS-----------PLKSLSVEKTVAPFVGDKDVNVRNAA 227 (266)
T ss_dssp ----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH----CSG-----------GGGGGCHHHHHGGGGGCSSHHHHHHH
T ss_pred ----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc----CCC-----------ccccccchHHHHHHHcCCCHHHHHHH
Confidence 25677888889999999999999999987531 210 23467 999999999999999999
Q ss_pred HHHHHHHHccCC
Q 009647 471 LQFMELVLRGMP 482 (530)
Q Consensus 471 L~~L~~il~~~~ 482 (530)
+.++..+....+
T Consensus 228 l~~lve~y~~~G 239 (266)
T 2of3_A 228 INVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999887765443
No 109
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.73 E-value=0.1 Score=48.92 Aligned_cols=172 Identities=13% Similarity=0.110 Sum_probs=113.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhc---CCCChHHHHHHHHHHHHHh----cCChhhHH
Q 009647 102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA---FGSPDEQLLEAAWCLTNIA----AGKQEETK 174 (530)
Q Consensus 102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~---~~~~~~~~~eA~~~L~nia----~~~~~~~~ 174 (530)
.+.+.|...+++|+..|.+.++... ..++. .+..++..+. .+++..+...++.+|..+. .....-..
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~----~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSP----RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCH----HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhCh----HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 3458899999999999999876432 23332 2333344332 2344555555555555543 21111122
Q ss_pred hhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647 175 ALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253 (530)
Q Consensus 175 ~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 253 (530)
.-. -.+|.|+.-+.+ +.+.+|+.+-.++..++.-.+. ..+.+.++.-+++.+...+..++-.+.++.....
T Consensus 128 ~ea~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 222 368999999987 6788999888877766542111 1245667777788899999999988888875332
Q ss_pred CCchhhHHHhhchH---HHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647 254 PKPATELIKVDGLL---DAILRHLKRADEELTTEVAWVVVYLSA 294 (530)
Q Consensus 254 ~~~~~~~v~~~~~l---~~L~~lL~~~d~~v~~~a~~~L~~L~~ 294 (530)
..+ ..++ |.+.+++.+.|..|+..|..|+..+-.
T Consensus 200 ~~~-------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 200 ISP-------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp SGG-------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CCc-------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 221 2467 999999999999999999999886654
No 110
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.53 E-value=0.32 Score=48.46 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=109.1
Q ss_pred hhHHHHHHHhcc-----------CcHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcCCChhHHHHHHHHHH
Q 009647 356 QVIAVLVKCLKS-----------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLG 423 (530)
Q Consensus 356 ~~l~~L~~lL~~-----------~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~~~~~v~~eA~~aL~ 423 (530)
+++..|+.+|.. .+..+..+++.||..|.. +......++.+ ..+..|+..|.+..+.+++.|+..|+
T Consensus 109 ~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 109 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 456666666631 134677888899998865 44666767754 77999999999999999999999999
Q ss_pred HhcCCCCCCCCCchhHHH---HHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcc----hhHHHHhch
Q 009647 424 NLCVSPTEGEGKPKLIQE---HLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDG 495 (530)
Q Consensus 424 nl~~~~~~~~~~~~~~~~---~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~----~~~i~~~gg 495 (530)
-+|..+.+.+|.+ .+.+ +.....+..-..++++.|.. .+.+....++..|..++...++-.. +..+..+|.
T Consensus 188 ~lc~~~~~~gG~~-~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 266 (383)
T 3eg5_B 188 ALCILPQPEDMNE-RVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 266 (383)
T ss_dssp HHHTCCSSTTHHH-HHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHhCcCcCCcHH-HHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCh
Confidence 9887542111211 0111 11222344568889999987 6788888999999999887665333 356678888
Q ss_pred HHHHHHHhcCCcHHHHHH
Q 009647 496 IDAMERFQFHENEDLRNM 513 (530)
Q Consensus 496 l~~L~~L~~~~~~~i~~~ 513 (530)
.+.|+.|...+++++..+
T Consensus 267 ~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 267 HQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHH
Confidence 889999988888877654
No 111
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.47 E-value=0.31 Score=48.59 Aligned_cols=142 Identities=14% Similarity=0.158 Sum_probs=101.0
Q ss_pred cHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC-CchhHHH---HH
Q 009647 369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG-KPKLIQE---HL 443 (530)
Q Consensus 369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~-~~~~~~~---~~ 443 (530)
+.....+++.||..|... ......++.+ +.+..|...|.+..+.+++.|+..|+-+|..+.+. | .. .+.+ +.
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~-G~~~-~VL~Al~~~ 147 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPE-DMNE-RVLEAMTER 147 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSST-THHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCC-ChHH-HHHHHHHHH
Confidence 346788889999988654 4556666654 78899999999999999999999888888754211 2 11 0111 11
Q ss_pred HHHHhcCChHHHHhhhc-cCCHHHHHHHHHHHHHHHccCCCCcc----hhHHHHhchHHHHHHHhcCCcHHHHHH
Q 009647 444 VSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNM 513 (530)
Q Consensus 444 ~~l~~~g~i~~L~~lL~-~~d~~i~~~~L~~L~~il~~~~~~~~----~~~i~~~ggl~~L~~L~~~~~~~i~~~ 513 (530)
...-+..-..++++.|. ..+.+....++.++..|+...++-.. +..+..+|-.+.|+.|...+++++..+
T Consensus 148 ~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 148 AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 12223456777888887 46678888899999999887665332 356777888889999999898887655
No 112
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.16 E-value=1.8 Score=49.05 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=84.2
Q ss_pred HHHHhcCCCChHHHHH-HHHHHHHHhcCChh-hHHhhc-CCcHHHHHhhcCCC----CHHHHHHHHHHHHhhcCCCchhH
Q 009647 142 LVQCLAFGSPDEQLLE-AAWCLTNIAAGKQE-ETKALL-PALPLLIAHLGEKS----SSPVAEQCAWALGNVAGEGEEFR 214 (530)
Q Consensus 142 Lv~lL~~~~~~~~~~e-A~~~L~nia~~~~~-~~~~i~-~~v~~L~~lL~~~~----~~~v~~~a~~~L~nla~d~~~~r 214 (530)
|-+.+..+......+| ++|+++.||..-.+ .-..++ ..++.|+.+..... .+.++...+|++|..+.--....
T Consensus 482 l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~ 561 (1073)
T 3gjx_A 482 LQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW 561 (1073)
T ss_dssp HHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH
T ss_pred HHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH
Confidence 3333333334466677 79999999854432 222333 67888888775421 23355566799998764211111
Q ss_pred HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH-----hhchHHHHHHH----hccCCHHHHHHH
Q 009647 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK-----VDGLLDAILRH----LKRADEELTTEV 285 (530)
Q Consensus 215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~-----~~~~l~~L~~l----L~~~d~~v~~~a 285 (530)
. .-...+..|+..+..+++.++..|+-++..+|..... .++. ....++.++.. ...-+++-....
T Consensus 562 ~--~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~----~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~l 635 (1073)
T 3gjx_A 562 K--FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRR----HFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTF 635 (1073)
T ss_dssp H--HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG----GGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHH
T ss_pred H--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH----HHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1 1123455666777778899999999999999975321 1110 01233333332 223345556666
Q ss_pred HHHHHHhhcC
Q 009647 286 AWVVVYLSAL 295 (530)
Q Consensus 286 ~~~L~~L~~~ 295 (530)
..+++++...
T Consensus 636 yeav~~vi~~ 645 (1073)
T 3gjx_A 636 YEAVGYMIGA 645 (1073)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 6667777764
No 113
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.99 E-value=0.24 Score=50.85 Aligned_cols=243 Identities=18% Similarity=0.128 Sum_probs=150.3
Q ss_pred hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-------cCC---HHHHHHHHHHHHHhh
Q 009647 224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-------RAD---EELTTEVAWVVVYLS 293 (530)
Q Consensus 224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-------~~d---~~v~~~a~~~L~~L~ 293 (530)
..|+.-|-++.-+++--|+-+|..+.+.......+.......+.-.++-++. .+| ..|++.|+.+|+.+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL- 255 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI- 255 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence 3444445578899999999999998864321000000001122333333332 122 36888999998888
Q ss_pred cCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH
Q 009647 294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 373 (530)
Q Consensus 294 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~ 373 (530)
..-++. ..++..|+..+ ..+..+++--++-.|.++ . +.... + .++++.++..|.+.+.+||
T Consensus 256 ~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL---~-DLL~~-L-------d~Vv~aVL~GL~D~DDDVR 316 (800)
T 3oc3_A 256 YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL---K-EFVED-K-------DGLCRKLVSLLSSPDEDIK 316 (800)
T ss_dssp TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT---G-GGCCC-H-------HHHHHHHHHHTTCSSHHHH
T ss_pred HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH---H-HHHHH-H-------HHHHHHHHhhcCCcccHHH
Confidence 432222 34555555544 456778888888888887 1 11111 2 3789999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCC-h-hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC
Q 009647 374 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP-F-DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 451 (530)
Q Consensus 374 ~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~-~-~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~ 451 (530)
..|+-+|.-++ .++.+..+ +..+.+.|.+-+ - .-.......|+.++..+..... +...
T Consensus 317 AVAAetLiPIA--~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~-------------dp~L 376 (800)
T 3oc3_A 317 LLSAELLCHFP--ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI-------------PPER 376 (800)
T ss_dssp HHHHHHHTTSC--CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC-------------CSGG
T ss_pred HHHHHHhhhhc--chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc-------------ChHH
Confidence 99999999998 23333333 334555554322 1 1223344566666654321111 1368
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHH-HHHHhcCCcHHHHHHHHHHHH
Q 009647 452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA-MERFQFHENEDLRNMANGLVD 519 (530)
Q Consensus 452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~-L~~L~~~~~~~i~~~A~~il~ 519 (530)
+|.|.-+|...-+.++..++++|..++ + ...+.. .+++.-.++++|.+.+.++..
T Consensus 377 VPRL~PFLRHtITSVR~AVL~TL~tfL----~---------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 377 LKDIFPCFTSPVPEVRTSILNMVKNLS----E---------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGTGGGGTCSSHHHHHHHHHHTTTCC----C---------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHH----h---------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999999999999999887765 1 112222 355677889999999988775
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.96 E-value=0.48 Score=53.89 Aligned_cols=174 Identities=16% Similarity=0.144 Sum_probs=100.7
Q ss_pred HHHHHhcCC---hhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc----CCHHHHHHHH
Q 009647 214 RNVLLSQGA---LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVA 286 (530)
Q Consensus 214 r~~~~~~g~---i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~----~d~~v~~~a~ 286 (530)
.|.+...|- +..+..++.+.+....+ |+++|..+.... .|.. ..+..+..++.+ .++.+...++
T Consensus 346 lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~--~Pt~------e~l~~~~~l~~~~~~~~~~~l~~ta~ 416 (1056)
T 1lsh_A 346 LDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ--QATR------ESLSYARELLNTSFIRNRPILRKTAV 416 (1056)
T ss_dssp HHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC--CCCH------HHHHHHHHHHTCHHHHTCHHHHHHHH
T ss_pred HHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC--CCCH------HHHHHHHHHHhCcccccCHHHHHHHH
Confidence 344444443 44455556665544444 445554443322 2323 334455566653 3556777777
Q ss_pred HHHHHhhcC---CchhHHHHHhcCchHHHHHHHh---cCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHH
Q 009647 287 WVVVYLSAL---SNVATSLLVKSGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV 360 (530)
Q Consensus 287 ~~L~~L~~~---~~~~~~~i~~~g~l~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~ 360 (530)
-+++.|... .... +....++.+.+.|. ...+..-..-+|++|||+-.. ..++.
T Consensus 417 La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------------~~l~~ 475 (1056)
T 1lsh_A 417 LGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------------NSIKK 475 (1056)
T ss_dssp HHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------------GGHHH
T ss_pred HHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------------hHHHH
Confidence 777666531 1111 11122344443332 345566678899999998532 26667
Q ss_pred HHHHhcc-------CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh--cCCChhHHHHHHHHHHHh
Q 009647 361 LVKCLKS-------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL--STSPFDIKKEVAYVLGNL 425 (530)
Q Consensus 361 L~~lL~~-------~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL--~~~~~~v~~eA~~aL~nl 425 (530)
|.+++.. ....++..|+|+|.+++...+..++ +.+..++ ...++++|..|+.+|...
T Consensus 476 l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 476 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 7777642 1347889999999999876655443 4566777 456788999999988653
No 115
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.56 E-value=0.025 Score=52.71 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=27.1
Q ss_pred hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHH
Q 009647 224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAW 287 (530)
Q Consensus 224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~ 287 (530)
+.|..++++++..++..++..+ +. +.+..++.++++.|+..++.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l--------~~------------~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL--------PL------------EQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS--------CT------------GGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhC--------CH------------HHHHHHHcCCCHHHHHHHHH
Confidence 4567777788888887777632 10 11334456667777776665
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.44 E-value=0.78 Score=41.82 Aligned_cols=142 Identities=11% Similarity=0.004 Sum_probs=97.1
Q ss_pred hhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHH-HhccCCHHHHHHHHHHHHHhhc-CCchhHHH
Q 009647 225 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR-HLKRADEELTTEVAWVVVYLSA-LSNVATSL 302 (530)
Q Consensus 225 ~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~L~~-~~~~~~~~ 302 (530)
....+.+++..+++-.|+..|..+ . + ....++.+.. +...+.=.|+.-++.++..++. ..++
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~-~---~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYL-S---K--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHT-T---T--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHhCcchHHHHHHHHHHHhc-c---C--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 334455666678888888888777 2 1 2356777776 4445556788888888888874 2222
Q ss_pred HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN 382 (530)
Q Consensus 303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn 382 (530)
..++.+...+ .+++..++..|+..+.--+......+. ..-++|.|-.+..+++..||+...|.|..
T Consensus 139 ----~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~~~~k~d---------p~~ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 139 ----KALPIIDEWL-KSSNLHTRRAATEGLRIWTNRPYFKEN---------PNEAIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp ----TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGSTTTTTC---------HHHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhccchhhcC---------HHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 1456667766 588888888777665432222111111 12478888888888899999999999999
Q ss_pred HhcCCHHHHHHHHh
Q 009647 383 IAAGSVEHKQLIHS 396 (530)
Q Consensus 383 l~~~~~~~~~~li~ 396 (530)
++..+|+-+..+++
T Consensus 205 ~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 205 ISKKFPDLVKIELK 218 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HhhhCHHHHHHHHH
Confidence 99999887776655
No 117
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.38 E-value=3.4 Score=39.66 Aligned_cols=236 Identities=13% Similarity=0.137 Sum_probs=148.6
Q ss_pred CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch----hHHHHHhc-CChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647 178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE----FRNVLLSQ-GALPPLARMMLPNKGSTVRTAAWALSNLIKGP 252 (530)
Q Consensus 178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~----~r~~~~~~-g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 252 (530)
+.+..|+..|.. -+.+.+..++.+++++...... .-+.+... .++..|+.-.. ++++.-++.-.|.-.+++.
T Consensus 78 dll~~Li~~l~~-L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 78 GLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp SHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSH
T ss_pred CHHHHHHHhccc-CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhH
Confidence 466777777766 5678888888888888764432 22333332 23333333333 4455556666666666542
Q ss_pred CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcC---chHHHHHHHhcCCCccchhhhH
Q 009647 253 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG---VLQLLVERLATSNSLQLLIPVL 329 (530)
Q Consensus 253 ~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g---~l~~Lv~lL~~~~~~~v~~~al 329 (530)
....++...+.+-.+...+..++=++..+|..++..|...+.......+... .....-.+| .+++--++..++
T Consensus 155 ---~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll-~S~NYVTkRQSl 230 (341)
T 1upk_A 155 ---PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVTKRQSL 230 (341)
T ss_dssp ---HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred ---HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh-cCCcchhHHHHH
Confidence 2233444556666777888888889999999999988876555554444432 445566666 577777888999
Q ss_pred HHHhhhhcCCccc--cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC---CHHHHHHHHhC--CcHHH
Q 009647 330 RSLGNLVAGDSST--ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---SVEHKQLIHSS--EALAL 402 (530)
Q Consensus 330 ~~L~nl~~~~~~~--~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~---~~~~~~~li~~--~~l~~ 402 (530)
..||.+....... -...+. +..-+..++.+|.+....|+.+|..+.--.++. +++....++.. .++..
T Consensus 231 KLLgelLldr~N~~vM~~Yis-----~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~f 305 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYIS-----KPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEF 305 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhC-----CHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999764432 223343 346899999999999999999999998887775 33334444433 34444
Q ss_pred HHHHhcCC--ChhHHHHHHHHHHHh
Q 009647 403 LLHLLSTS--PFDIKKEVAYVLGNL 425 (530)
Q Consensus 403 Li~lL~~~--~~~v~~eA~~aL~nl 425 (530)
|-+...+. |.....|=...+..|
T Consensus 306 l~~f~~d~~eDeqF~dEK~~lI~~I 330 (341)
T 1upk_A 306 LSKFQNDRTEDEQFNDEKTYLVKQI 330 (341)
T ss_dssp HHHTTTTC-CCSHHHHHHHHHHHHH
T ss_pred HHhCCCCCcchhhHHHHHHHHHHHH
Confidence 44444332 334444444444444
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.21 E-value=5 Score=40.48 Aligned_cols=123 Identities=12% Similarity=0.066 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH
Q 009647 191 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 270 (530)
Q Consensus 191 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L 270 (530)
.+...+.-|+..+.....+.|+..+.. +..++.++.+.+..++.+|+..|..+|++. . ...+...|
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~~-------~--i~kiaDvL 105 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATGE-------N--LPRVADIL 105 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCTT-------C--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhhh-------h--hhhHHHHH
Confidence 457778888888888887777766554 456788888889999999999999999761 2 34777889
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647 271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 336 (530)
Q Consensus 271 ~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~ 336 (530)
+++|..+++.-...+-++|..|...++. +.+..+...+. .+++.++..++..|..-+
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~-~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQIL-QGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHH-HSCHHHHHHHHHHHHHHG
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHc-ccchHHHHHHHHHHHHHH
Confidence 9999999988888888888777763331 23344444443 245677777777775443
No 119
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.97 E-value=3.5 Score=47.55 Aligned_cols=305 Identities=13% Similarity=0.087 Sum_probs=163.0
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhc-CCCChHHHHHHHHHHHHHhcC--
Q 009647 94 EELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA-FGSPDEQLLEAAWCLTNIAAG-- 168 (530)
Q Consensus 94 ~~l~~~l~~l~s~--d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~-~~~~~~~~~eA~~~L~nia~~-- 168 (530)
.++.+++....++ |.+.+.+|-..|..+ ... | ...+.+...|. ...++.+++-|+..|.|....
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~-~~~--p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W 79 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEF-KEK--C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW 79 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHH-HHH--C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHH-HhC--c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 4455555433344 777888888888776 221 1 13444445454 344566777788889887632
Q ss_pred ---ChhhHHhhcC-CcHHHHHhhcCC--CCHHHHHHHHHHHHhhcCCC-chhHHHHHhcCChhhhHhhcCCCChhHHHHH
Q 009647 169 ---KQEETKALLP-ALPLLIAHLGEK--SSSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPNKGSTVRTA 241 (530)
Q Consensus 169 ---~~~~~~~i~~-~v~~L~~lL~~~--~~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a 241 (530)
+.+.+..+-. .+..+...-... ....++.+.+.++..|+... +.. =.+.++.|+.++++ +....+.+
T Consensus 80 ~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~-~~~~~e~~ 153 (1204)
T 3a6p_A 80 NGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ-GETQTELV 153 (1204)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT-CHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC-CHHHHHHH
Confidence 3333333332 333333321110 35789999999998887521 100 12456677777765 45667788
Q ss_pred HHHHHHhhcC----CCCCchhh-----HHH--hhchHHHHHHHhcc-------------------CCHHHHHHHHHHHHH
Q 009647 242 AWALSNLIKG----PDPKPATE-----LIK--VDGLLDAILRHLKR-------------------ADEELTTEVAWVVVY 291 (530)
Q Consensus 242 ~~~L~nL~~~----~~~~~~~~-----~v~--~~~~l~~L~~lL~~-------------------~d~~v~~~a~~~L~~ 291 (530)
..+|..|+.. ......+. .+. ...+++.+..++.. ++..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 8888888742 11111110 111 01333444444432 123466667777765
Q ss_pred hhcCCchhHHHHHhcC--chHHHHHHHhcCCCccchhhhHHHHhhhhcCCc--cccchhcccCCCcchhhHHHHHHHhc-
Q 009647 292 LSALSNVATSLLVKSG--VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS--STISDVLVPGHGITDQVIAVLVKCLK- 366 (530)
Q Consensus 292 L~~~~~~~~~~i~~~g--~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~--~~~~~~i~~g~~~~~~~l~~L~~lL~- 366 (530)
...--+ ...+.+.. .++.+..++ .+++++..|+.||..++.... .....++.. +....+..++..+.
T Consensus 234 ~l~Wi~--~~~i~~~~~~ll~~l~~~l---~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~---l~~~~l~~l~~~~~~ 305 (1204)
T 3a6p_A 234 YIDWVS--MSHITAENCKLLEILCLLL---NEQELQLGAAECLLIAVSRKGKLEDRKPLMVL---FGDVAMHYILSAAQT 305 (1204)
T ss_dssp TTTTSC--HHHHHTTTSHHHHHHHHGG---GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGG---GSHHHHHHHHHHHHT
T ss_pred HHhccC--HHHHHhccchHHHHHHHHc---CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHH---HhhHHHHHHHHHhhc
Confidence 543222 23333432 556666544 357889999999999997542 111112210 01123444455432
Q ss_pred -------cCcHhHHHHHHHHHHHHhcCCHHHHHHHHh-----------CCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647 367 -------SEHRVLKKEAAWVLSNIAAGSVEHKQLIHS-----------SEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 367 -------~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~-----------~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~ 427 (530)
..+..+.+..|..+..+.. . ...++. .++++.++.++.+++..+-..++..-..+..
T Consensus 306 ~~~~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 306 ADGGGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 2245677788888887752 2 222221 1357777777788877777766644443443
No 120
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.22 E-value=3.9 Score=47.21 Aligned_cols=292 Identities=16% Similarity=0.120 Sum_probs=156.2
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhc-CCCCHHHHHHHHHHHHhhcCC-----CchhHHHHHhcCChh
Q 009647 151 PDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG-EKSSSPVAEQCAWALGNVAGE-----GEEFRNVLLSQGALP 224 (530)
Q Consensus 151 ~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~-~~~~~~v~~~a~~~L~nla~d-----~~~~r~~~~~~g~i~ 224 (530)
++..+.+|-..|..+.... ++.+.+...|. .+.++.+|..|+..|.|.... +++.|..+. ..++.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~ 96 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVME 96 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHH
Confidence 3445566777777664322 13344444443 346788999999999887632 233333333 22344
Q ss_pred hhHhhcCC---CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC---C--
Q 009647 225 PLARMMLP---NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL---S-- 296 (530)
Q Consensus 225 ~L~~lL~~---~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~-- 296 (530)
.+...... ....++..++-+++.++...-|.. =..+++.|+.++.. ++.....++.+|..|++. .
T Consensus 97 ~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~------Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~ 169 (1204)
T 3a6p_A 97 LIANGTLNILEEENHIKDALSRIVVEMIKREWPQH------WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT 169 (1204)
T ss_dssp HHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT------CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHhhccccccccHHHHHHHHHHHHHHHHHhCccc------chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence 44433211 356778888888988886543322 13677888888865 556677788888888642 1
Q ss_pred --chhHH----HHHhc--CchHHHHHHHhcC------------------CCccchhhhHHHHhhhhcCCccccchhcccC
Q 009647 297 --NVATS----LLVKS--GVLQLLVERLATS------------------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPG 350 (530)
Q Consensus 297 --~~~~~----~i~~~--g~l~~Lv~lL~~~------------------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g 350 (530)
..... .+.+. .+++.+...|..+ .+..+...++.++.+...--+. ..+.+.
T Consensus 170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~- 246 (1204)
T 3a6p_A 170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAE- 246 (1204)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhc-
Confidence 11111 11111 1223333333211 1223556777777766543221 112210
Q ss_pred CCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC--HHHHHHHHhC---CcHHHHHHHhc--------CCChhHHHH
Q 009647 351 HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS--VEHKQLIHSS---EALALLLHLLS--------TSPFDIKKE 417 (530)
Q Consensus 351 ~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~--~~~~~~li~~---~~l~~Li~lL~--------~~~~~v~~e 417 (530)
....++.+..++. ++.++..|+-+|..|+... ++....++.. ..+..++..+. ..+.++.+.
T Consensus 247 ---~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 247 ---NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp ---TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred ---cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 1136777776665 4678999999999998753 3332223321 11234444432 123566667
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-----------cCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647 418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-----------RGCLSGFIDLVRSADIEAARLGLQFMELVLRG 480 (530)
Q Consensus 418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-----------~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~ 480 (530)
-+..+..+.. +...++. .++++.++.+...++..+...++++-..+++.
T Consensus 322 l~~ll~~lg~--------------~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 322 LCQVLCALGN--------------QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHH--------------HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH--------------HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 7777766641 1122211 13466666666666666666666655555543
No 121
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=92.96 E-value=3.8 Score=37.70 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=96.5
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC----ccchhhhHHHHhhhhcCCccc-cchhcccCCCcchhh
Q 009647 283 TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS----LQLLIPVLRSLGNLVAGDSST-ISDVLVPGHGITDQV 357 (530)
Q Consensus 283 ~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~----~~v~~~al~~L~nl~~~~~~~-~~~~i~~g~~~~~~~ 357 (530)
.+|+..|..++. +++....++++.+.-.|..+|..... +.++..++..+|.++..++.. +..++ +..+
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL------~tEi 146 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLL------TTEI 146 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHH------HTTH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHH------hhhH
Confidence 445555566676 67777888899988888988853221 345678999999999766544 34444 3579
Q ss_pred HHHHHHHhccCcHhHHHHHHHHHHHHhcCC---------HHHHHHHHhCCcHHHHHHH-hcCCChhHHHHHHHHHHHhcC
Q 009647 358 IAVLVKCLKSEHRVLKKEAAWVLSNIAAGS---------VEHKQLIHSSEALALLLHL-LSTSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 358 l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~---------~~~~~~li~~~~l~~Li~l-L~~~~~~v~~eA~~aL~nl~~ 427 (530)
+|...+.+..++.--|.-|.+++..|...+ .+...++.. ++..++.. .+.+++.+-+..+++-..++.
T Consensus 147 iplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~--vL~~mV~~l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 147 IPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAM--ILGKMVLQLSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 999999999999988999999999886532 233333322 34444443 367788888999998888876
Q ss_pred C
Q 009647 428 S 428 (530)
Q Consensus 428 ~ 428 (530)
+
T Consensus 225 n 225 (268)
T 2fv2_A 225 N 225 (268)
T ss_dssp S
T ss_pred C
Confidence 5
No 122
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=92.72 E-value=3.4 Score=37.99 Aligned_cols=135 Identities=12% Similarity=0.131 Sum_probs=92.4
Q ss_pred hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc-----HhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc
Q 009647 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH-----RVLKKEAAWVLSNIAA-GSVEHKQLIHSSEA 399 (530)
Q Consensus 326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~-----~~i~~~A~~~Lsnl~~-~~~~~~~~li~~~~ 399 (530)
.+|+..+..++++++... .+++ ..+.-.|..+|+..+ +.+|-.+..+++.+.. .+++.+..+++.++
T Consensus 74 cnaLaLlQcvAshpetr~-~Fl~------a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEi 146 (268)
T 2fv2_A 74 CNALALLQCVASHPETRS-AFLA------AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEI 146 (268)
T ss_dssp HHHHHHHHHHHHCTTTHH-HHHH------TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHcCcchhh-HHHH------ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhH
Confidence 466777777787665443 3443 245555666665432 4789999999999885 46788888999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh--------cCChHHHHh-hhccCCHHHHHHH
Q 009647 400 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG--------RGCLSGFID-LVRSADIEAARLG 470 (530)
Q Consensus 400 l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~--------~g~i~~L~~-lL~~~d~~i~~~~ 470 (530)
+|..++.++.++.-.|.-|.+.+..+..+. .-+.++.. ..++..++. +.+.+++.+.+.+
T Consensus 147 iplCLrime~GselSKtvAtfIlqKIL~dd-----------~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhi 215 (268)
T 2fv2_A 147 IPLCLRIMESGSELSKTVATFILQKILLDD-----------TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHV 215 (268)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHSH-----------HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhccc-----------hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 999999999999999999999988886531 22233322 123333333 3456778888877
Q ss_pred HHHHHHHH
Q 009647 471 LQFMELVL 478 (530)
Q Consensus 471 L~~L~~il 478 (530)
+++-..+.
T Consensus 216 ircYlRLs 223 (268)
T 2fv2_A 216 VRCYLRLS 223 (268)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77666664
No 123
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.36 E-value=3.3 Score=41.83 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=92.2
Q ss_pred CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCC
Q 009647 319 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSE 398 (530)
Q Consensus 319 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~ 398 (530)
.++.....-|...|......-++.. ..++..++.|..+.+..||+.|+..|..+|.+ +.+..
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~-----------~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k----- 100 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA-----------DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR----- 100 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH-----------HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH-----------HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----
Confidence 3456677778888888876655432 35788899999999999999999999999886 44444
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647 399 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 478 (530)
Q Consensus 399 ~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il 478 (530)
+...|+++|+..++.-...+-++|..+.... -.+.+..|+.-+..+|+.+...++.+|..-+
T Consensus 101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D------------------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 101 VADILTQLLQTDDSAEFNLVNNALLSIFKMD------------------AKGTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC------------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhcC------------------hHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 4558899999888765555555555553211 1245566666666678888889999887766
Q ss_pred ccCCC
Q 009647 479 RGMPN 483 (530)
Q Consensus 479 ~~~~~ 483 (530)
...+.
T Consensus 163 ~~l~~ 167 (507)
T 3u0r_A 163 KTLPD 167 (507)
T ss_dssp GGSCT
T ss_pred hhcch
Confidence 55443
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.14 E-value=3 Score=39.87 Aligned_cols=180 Identities=14% Similarity=0.030 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcC------CcHH
Q 009647 109 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP------ALPL 182 (530)
Q Consensus 109 ~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~------~v~~ 182 (530)
+..+.++..+...+.....+.. ....+..+..+++.+. +.++-+.-.+.-.+. ++.....+.+ .+..
T Consensus 79 ~~el~~L~~l~~~l~~~s~~~~----~~~~l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~ 151 (304)
T 3ebb_A 79 EDDLILLEKILSLICNSSSEKP----TVQQLQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSH 151 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCC----CHHHHHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcc----chHHHHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHH
Confidence 4456666666665543211111 1113345555555433 223444444444443 2222222211 2233
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc--CChhhhHhhcCCCChhHHHHHHHHHHHhhcC--CCCCchh
Q 009647 183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMMLPNKGSTVRTAAWALSNLIKG--PDPKPAT 258 (530)
Q Consensus 183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~--~~~~~~~ 258 (530)
++..+.+...+..+--++.+++|+.. ++..|+.++.. .+++.+...+.+++..++..++..+.|++-. +.+. .
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~--~ 228 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN--I 228 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC--H
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC--c
Confidence 44555443456678899999999997 56788877753 2444455555566888999999999998753 1111 1
Q ss_pred hHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhH
Q 009647 259 ELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVAT 300 (530)
Q Consensus 259 ~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~ 300 (530)
+. ...++..+..++. ..|.|....++-+|++|...+.+..
T Consensus 229 ~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~ 269 (304)
T 3ebb_A 229 EG--KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAV 269 (304)
T ss_dssp HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHH
Confidence 21 2235555555554 4588999999999999997654433
No 125
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.79 E-value=9.3 Score=37.75 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcC----------CCChHHHHHHHHHHHHHhcCChhhHHhhc
Q 009647 108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----------GSPDEQLLEAAWCLTNIAAGKQEETKALL 177 (530)
Q Consensus 108 ~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----------~~~~~~~~eA~~~L~nia~~~~~~~~~i~ 177 (530)
....+..+..|+..|...+...++.++ .+++..|+.+|.. ......+.+++.||..+.... .....++
T Consensus 81 ~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~-~G~~~vl 158 (383)
T 3eg5_B 81 DMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTML 158 (383)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSH-HHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcch-hhHHHHH
Confidence 444567788898888877666667777 6778888888851 112356678999999887543 3555666
Q ss_pred ---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hh-HHHHH----------hcCChhhhHhhcCCC-ChhHHHHH
Q 009647 178 ---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLPN-KGSTVRTA 241 (530)
Q Consensus 178 ---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~lL~~~-~~~~~~~a 241 (530)
..+..+...|.+ +++.++..++-.|+-+|..+. +. ...++ +..-..+++..+.+. +.+...++
T Consensus 159 ~~~~~i~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~ 237 (383)
T 3eg5_B 159 ETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC 237 (383)
T ss_dssp TCSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHH
T ss_pred cChHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHH
Confidence 478888888876 789999999999999886442 22 22222 334567788888763 55555555
Q ss_pred HHHHHHhhcCCCCCchh-----hHHHhhchHHHHHHHhccCCHHHH
Q 009647 242 AWALSNLIKGPDPKPAT-----ELIKVDGLLDAILRHLKRADEELT 282 (530)
Q Consensus 242 ~~~L~nL~~~~~~~~~~-----~~v~~~~~l~~L~~lL~~~d~~v~ 282 (530)
...+-.+..+. +.... .-+...|+.+.+-++=..+++++.
T Consensus 238 m~lIN~li~~~-~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 238 LQLINALITPA-EELDFRVHIRSELMRLGLHQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHHHTTC-CCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence 44444455443 22211 111234555555553334455443
No 126
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.47 E-value=10 Score=34.55 Aligned_cols=141 Identities=17% Similarity=0.132 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcC----CC------ChHHHHHHHHHHHHHhcCChhhHHhhc
Q 009647 108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----GS------PDEQLLEAAWCLTNIAAGKQEETKALL 177 (530)
Q Consensus 108 ~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----~~------~~~~~~eA~~~L~nia~~~~~~~~~i~ 177 (530)
.+...+-+..|+..|...+-..++.+ ..+++..|+.+|.. .. ....+.++..||..+.... .....++
T Consensus 15 ~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~-~G~~~vl 92 (233)
T 2f31_A 15 DMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTML 92 (233)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSH-HHHHHHH
T ss_pred hHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCCh-HHHHHHH
Confidence 33345567777777776655556666 56788888888752 11 2355678999999887543 3455555
Q ss_pred ---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hh-HHHHH----------hcCChhhhHhhcCC-CChhHHHHH
Q 009647 178 ---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLP-NKGSTVRTA 241 (530)
Q Consensus 178 ---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~lL~~-~~~~~~~~a 241 (530)
+.+..+...|.+ +++.++..++-.|+-+|.-+. .. -..++ +..-..+++..+.+ .+.+...++
T Consensus 93 ~~~~~i~~l~~~L~s-~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~ 171 (233)
T 2f31_A 93 ETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC 171 (233)
T ss_dssp TSSSHHHHHHTTCCT-TSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHH
T ss_pred cCcHHHHHHHHHhCC-CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHH
Confidence 378888888876 789999999998888886432 12 22222 22345567777764 345555555
Q ss_pred HHHHHHhhcC
Q 009647 242 AWALSNLIKG 251 (530)
Q Consensus 242 ~~~L~nL~~~ 251 (530)
.-.+-.+..+
T Consensus 172 m~lIN~li~~ 181 (233)
T 2f31_A 172 LQLINALITP 181 (233)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 5555455544
No 127
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=89.03 E-value=14 Score=34.16 Aligned_cols=195 Identities=10% Similarity=0.025 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647 92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171 (530)
Q Consensus 92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~ 171 (530)
+-+.++++++..+....+.++..+...++++-.. +|.. . ..+++.++.+-.. .+.++++-.+..|...+....+
T Consensus 13 ~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~l---l-~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~~~~k~~ 86 (257)
T 3gs3_A 13 ARAKVVDWCNELVIASPSTKCELLAKVQETVLGS-CAEL---A-EEFLESVLSLAHD-SNMEVRKQVVAFVEQVCKVKVE 86 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGGG---H-HHHHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHhH---H-HHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 4577778887555533479999999999986654 3321 1 3466777776544 4567777788888888744332
Q ss_pred hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcC---------------ChhhhHhhcCCCChh
Q 009647 172 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG---------------ALPPLARMMLPNKGS 236 (530)
Q Consensus 172 ~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g---------------~i~~L~~lL~~~~~~ 236 (530)
.+...++.|..+|.+ .++.|...++-+.+++-. ..=+.+...+ .=..+++++.+.+..
T Consensus 87 ---l~~~~l~~L~~Ll~d-~d~~V~K~~I~~~~~iY~---~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~g 159 (257)
T 3gs3_A 87 ---LLPHVINVVSMLLRD-NSAQVIKRVIQACGSIYK---NGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDG 159 (257)
T ss_dssp ---GHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHH---HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHH
T ss_pred ---HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH---HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 222578888888886 789999998887776632 1111111221 122355556677888
Q ss_pred HHHHHHHHHHHhh--cCCC-CC-------chhhHH--------------HhhchHHHHHHHhccC--CHHHHHHHHHHHH
Q 009647 237 TVRTAAWALSNLI--KGPD-PK-------PATELI--------------KVDGLLDAILRHLKRA--DEELTTEVAWVVV 290 (530)
Q Consensus 237 ~~~~a~~~L~nL~--~~~~-~~-------~~~~~v--------------~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~ 290 (530)
++-.+...+-.+. .... +. .....| ...+.+..|+..+.++ +......++.+|+
T Consensus 160 vkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~ 239 (257)
T 3gs3_A 160 IRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLC 239 (257)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence 8888887776533 2110 00 000000 1234556666665544 3345667777777
Q ss_pred HhhcCCchh
Q 009647 291 YLSALSNVA 299 (530)
Q Consensus 291 ~L~~~~~~~ 299 (530)
.|+...+..
T Consensus 240 ~Iak~RP~~ 248 (257)
T 3gs3_A 240 TIAKMRPIF 248 (257)
T ss_dssp HHHHHCGGG
T ss_pred HHHHhCcHH
Confidence 777655544
No 128
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=89.03 E-value=0.57 Score=43.40 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=12.0
Q ss_pred hhHhhcCCCChhHHHHHHHH
Q 009647 225 PLARMMLPNKGSTVRTAAWA 244 (530)
Q Consensus 225 ~L~~lL~~~~~~~~~~a~~~ 244 (530)
.+..++++++..++..++..
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKR 169 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHc
Confidence 44455566666776666554
No 129
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=88.82 E-value=0.46 Score=39.65 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=53.9
Q ss_pred CChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchh-HHHHhchHHHHHHHhcCC--------cHHHHHHHHHHHHh
Q 009647 450 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTK-LVEREDGIDAMERFQFHE--------NEDLRNMANGLVDK 520 (530)
Q Consensus 450 g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~-~i~~~ggl~~L~~L~~~~--------~~~i~~~A~~il~~ 520 (530)
.+++.|..-|..+++.++.++|.+|..++..+.. .+.. +-.....+..+.+.+..+ +..|++.|.++++-
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~-~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS-EFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH-HHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH-HHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 3567788888889999999999999999876542 1222 222334444444444332 36899999999999
Q ss_pred hcCCCCC
Q 009647 521 YFGEDYG 527 (530)
Q Consensus 521 ~f~~~~~ 527 (530)
.|+++..
T Consensus 128 l~d~~~~ 134 (140)
T 1vdy_A 128 IFSEENG 134 (140)
T ss_dssp HTCCSSC
T ss_pred HhCcCCC
Confidence 9998764
No 130
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=88.42 E-value=11 Score=36.01 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=65.7
Q ss_pred CccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC-----HHHHHHHH
Q 009647 321 SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-----VEHKQLIH 395 (530)
Q Consensus 321 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~-----~~~~~~li 395 (530)
.+..+.-++|+++|+........ .++.. ...+++.+...+.+.+..++..++.++-|++... .+....
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~-~l~~~----~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-- 233 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQK-LMMSQ----RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-- 233 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHH-HHHHT----HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH--
T ss_pred ChHHHHHHHHHHHHccCCchhHH-HHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH--
Confidence 34456789999999997764322 22211 1346667777777778899999999999998631 111111
Q ss_pred hCCcHHHHHHHhc-CCChhHHHHHHHHHHHhcCC
Q 009647 396 SSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 396 ~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~ 428 (530)
++..+..+++ ..+.+....++-||++++..
T Consensus 234 ---ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 234 ---CLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp ---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 3444555553 45788999999999999974
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.42 E-value=2.6 Score=47.83 Aligned_cols=170 Identities=18% Similarity=0.165 Sum_probs=95.0
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHHHh----cCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC
Q 009647 139 IPVLVQCLAFG---SPDEQLLEAAWCLTNIA----AGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 210 (530)
Q Consensus 139 v~~Lv~lL~~~---~~~~~~~eA~~~L~nia----~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~ 210 (530)
+..+..++..+ +.+.+...|..+++.+. ..++.....++ .....|.+.+.. .+.+-+..++.+|||+..
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCC--
Confidence 34555666542 22334333555555554 22221111212 233444445555 467778889999999875
Q ss_pred chhHHHHHhcCChhhhHhhcCC-------CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--cCCHHH
Q 009647 211 EEFRNVLLSQGALPPLARMMLP-------NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--RADEEL 281 (530)
Q Consensus 211 ~~~r~~~~~~g~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~--~~d~~v 281 (530)
+ ..++.|.+++.. ....++..|+|+|..+.... | ..+-+.++++.. ..++++
T Consensus 470 p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p---------~~v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 470 P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-P---------RKVQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-H---------HHHHHHHHHHHHCTTSCHHH
T ss_pred h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-h---------HHHHHHHHHHhcCCCCChHH
Confidence 2 246677777642 23578889999999997431 1 123456677774 567899
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647 282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 340 (530)
Q Consensus 282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 340 (530)
+..|+..|..-. ++. ..+..+...+...++.+|..-....|.+++..+.
T Consensus 531 RiaA~~~Lm~t~--P~~--------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 531 RIRSCIVFFESK--PSV--------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHHHHHTC--CCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHC--cCH--------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 999988885432 221 1234444455433455555555555555554443
No 132
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=85.92 E-value=20 Score=35.24 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=88.1
Q ss_pred cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647 323 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL 402 (530)
Q Consensus 323 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~ 402 (530)
..+...|+-+..++...+.. ++ .++++.++.+-.+.+..+|+..+..|...+....+... .+++.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps---Ll-------~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~ 104 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT---LL-------DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIAN 104 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG---GG-------GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH---HH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 34566676677765443321 33 36899999998888889999999888877754433322 25678
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc---------------CChHHHHhhhccCCHHHH
Q 009647 403 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR---------------GCLSGFIDLVRSADIEAA 467 (530)
Q Consensus 403 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~---------------g~i~~L~~lL~~~d~~i~ 467 (530)
|..+|.+.++.|.+.++.+.+++-. ...++++.. .+-..+++++.+.+..+.
T Consensus 105 L~~LL~d~d~~V~K~~I~~~tslYp-------------l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVr 171 (386)
T 3o2t_A 105 LNMLLRDENVNVVKKAILTMTQLYK-------------VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR 171 (386)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHH-------------HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHH-------------HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchH
Confidence 8888888889999998888877731 112222222 123356667778888999
Q ss_pred HHHHHHHHHHHc
Q 009647 468 RLGLQFMELVLR 479 (530)
Q Consensus 468 ~~~L~~L~~il~ 479 (530)
..++.+++.+..
T Consensus 172 l~aiKFle~VIl 183 (386)
T 3o2t_A 172 THAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 133
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=83.54 E-value=13 Score=35.24 Aligned_cols=133 Identities=11% Similarity=0.041 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhC--CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-
Q 009647 372 LKKEAAWVLSNIAAGSVEHKQLIHSS--EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG- 448 (530)
Q Consensus 372 i~~~A~~~Lsnl~~~~~~~~~~li~~--~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~- 448 (530)
--..|+-.|--++ +....=-.|+++ .++..|+ +....++.+++.|+.+|+...++ +|. .+..+.+
T Consensus 44 ~le~aLD~L~ElS-HDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN------NP~----Al~~V~~~ 111 (315)
T 3qml_C 44 RLEDSFDRIMEFA-HDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN------NPP----VVEFINES 111 (315)
T ss_dssp HHHHHHHHHGGGT-TSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT------CHH----HHHHHHHH
T ss_pred HHHHHHHHHHHhh-hhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc------CHH----HHHHHHHh
Confidence 3445555555553 343443444432 2333343 22445667899999999988875 343 3343333
Q ss_pred -cCChHHHHhhhcc-------CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC--cHHHHHHHHHHH
Q 009647 449 -RGCLSGFIDLVRS-------ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLV 518 (530)
Q Consensus 449 -~g~i~~L~~lL~~-------~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~--~~~i~~~A~~il 518 (530)
-.++..+|.-|.. ...-++...|.+|..++..... + ...|++.|.++..-. ++.++.++..|+
T Consensus 112 ~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~--F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li 184 (315)
T 3qml_C 112 FPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED--L-----PIYSTVVLQNVYERNNKDKQLQIKVLELI 184 (315)
T ss_dssp CTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT--C-------CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh--h-----hhccHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 4566666655443 2334555566666666543211 1 133555555554444 899999999999
Q ss_pred HhhcC
Q 009647 519 DKYFG 523 (530)
Q Consensus 519 ~~~f~ 523 (530)
..+|.
T Consensus 185 ~d~f~ 189 (315)
T 3qml_C 185 SKILK 189 (315)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 99994
No 134
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=82.53 E-value=39 Score=33.18 Aligned_cols=192 Identities=11% Similarity=0.081 Sum_probs=113.2
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647 94 EELKSAVAYHG-KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 172 (530)
Q Consensus 94 ~~l~~~l~~l~-s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~ 172 (530)
+.++++++... .++ +.++..+..+++++-+. +|. . =.+.+|.++++-...+ .++++-.+..|...+....+
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~-dps---L-l~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~e- 96 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINK-DPT---L-LDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIE- 96 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTT-CGG---G-GGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGG-
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhcc-CHH---H-HHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHH-
Confidence 45555555221 233 47999999999985543 342 1 2678888888877554 67777677777777753332
Q ss_pred HHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCC---------------hhhhHhhcCCCChhH
Q 009647 173 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGA---------------LPPLARMMLPNKGST 237 (530)
Q Consensus 173 ~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~---------------i~~L~~lL~~~~~~~ 237 (530)
.+..+++.|..+|.+ .++.|...++-+.+++-. ..-..+...+. -..++.++.+.+..+
T Consensus 97 --l~~~~l~~L~~LL~d-~d~~V~K~~I~~~tslYp---l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GV 170 (386)
T 3o2t_A 97 --LLLKLIANLNMLLRD-ENVNVVKKAILTMTQLYK---VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGI 170 (386)
T ss_dssp --GHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH---HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHH
T ss_pred --HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH---HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcch
Confidence 233577888888876 788999998888887641 11122222222 223455566677888
Q ss_pred HHHHHHHHHHhh--cCC---CCC--------chhhHH--------------HhhchHHHHHHHhccC--CHHHHHHHHHH
Q 009647 238 VRTAAWALSNLI--KGP---DPK--------PATELI--------------KVDGLLDAILRHLKRA--DEELTTEVAWV 288 (530)
Q Consensus 238 ~~~a~~~L~nL~--~~~---~~~--------~~~~~v--------------~~~~~l~~L~~lL~~~--d~~v~~~a~~~ 288 (530)
+-.|+.++-.+. ... ++. ...+.| ...+.+..|+..+..+ ++.....++.+
T Consensus 171 rl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lns 250 (386)
T 3o2t_A 171 RTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGS 250 (386)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHH
Confidence 888877766533 211 111 000000 1234566677777643 34455667777
Q ss_pred HHHhhcCCchh
Q 009647 289 VVYLSALSNVA 299 (530)
Q Consensus 289 L~~L~~~~~~~ 299 (530)
|+.|+...+..
T Consensus 251 La~Iak~RP~~ 261 (386)
T 3o2t_A 251 LANIARQRPMF 261 (386)
T ss_dssp HHHHHHHSGGG
T ss_pred HHHHHHhcHHH
Confidence 88887755544
No 135
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=80.46 E-value=19 Score=33.28 Aligned_cols=135 Identities=12% Similarity=0.160 Sum_probs=86.0
Q ss_pred cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647 323 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL 402 (530)
Q Consensus 323 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~ 402 (530)
..+...|+-+..++-..+.. ++ ..+++.++.+..+.+..+|+..+..+...+...++... ..++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~---ll-------~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~ 94 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE---LA-------EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINV 94 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG---GH-------HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHccCHh---HH-------HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 34556666666655443321 22 36888888877777789999999888887744433322 25778
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhc--------CCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHH
Q 009647 403 LLHLLSTSPFDIKKEVAYVLGNLC--------VSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFM 474 (530)
Q Consensus 403 Li~lL~~~~~~v~~eA~~aL~nl~--------~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L 474 (530)
|..++.+.++.|.|.|+.+.+++- .++ +.+....+....|. .+=..+++++.+.+..+...++.++
T Consensus 95 L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~----~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~ 168 (257)
T 3gs3_A 95 VSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM----EPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFL 168 (257)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS----SCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC----CCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHH
Confidence 888889889999999988877762 221 11100001111121 2234566777888899999999999
Q ss_pred HHHH
Q 009647 475 ELVL 478 (530)
Q Consensus 475 ~~il 478 (530)
+.+.
T Consensus 169 e~vI 172 (257)
T 3gs3_A 169 EGVV 172 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9976
No 136
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=76.65 E-value=60 Score=31.87 Aligned_cols=172 Identities=16% Similarity=0.127 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcC----CC------ChHHHHHHHHHHHHHhcCChhhHHhhc-
Q 009647 109 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----GS------PDEQLLEAAWCLTNIAAGKQEETKALL- 177 (530)
Q Consensus 109 ~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----~~------~~~~~~eA~~~L~nia~~~~~~~~~i~- 177 (530)
......+..|+..|...+-..++.+. .+++..|+.+|.. .. ....+.+++.||..+..... ....++
T Consensus 20 ~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~-Gl~~vl~ 97 (386)
T 2bnx_A 20 MHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF-GIKTMLE 97 (386)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHH-HHHHHHH
T ss_pred HHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHH-HHHHHHc
Confidence 33455677787777766555566665 5778888887741 11 23556789999999875443 455555
Q ss_pred --CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hh-HHHHH----------hcCChhhhHhhcCC-CChhHHHHHH
Q 009647 178 --PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLP-NKGSTVRTAA 242 (530)
Q Consensus 178 --~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~lL~~-~~~~~~~~a~ 242 (530)
.++..+...|.+ +++.++..++-.|+-+|..+. .. -..++ +..-..+++..+.+ .+.++..++.
T Consensus 98 ~~~~i~~l~~sL~s-~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m 176 (386)
T 2bnx_A 98 TEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL 176 (386)
T ss_dssp SSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHH
T ss_pred CcHHHHHHHHHhCC-CCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHH
Confidence 478888888876 789999999988888886432 22 22222 23345567777763 4556555555
Q ss_pred HHHHHhhcCCCCCchh-----hHHHhhchHHHHHHHhccCCHHHHHH
Q 009647 243 WALSNLIKGPDPKPAT-----ELIKVDGLLDAILRHLKRADEELTTE 284 (530)
Q Consensus 243 ~~L~nL~~~~~~~~~~-----~~v~~~~~l~~L~~lL~~~d~~v~~~ 284 (530)
..+-.+..+. +.... .-+...|+.+.+-++-...++++...
T Consensus 177 ~lIN~lv~~~-~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 177 QLINALITPA-EELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 5555555443 22211 11123455555555444455554433
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=75.82 E-value=5.6 Score=34.06 Aligned_cols=69 Identities=10% Similarity=0.014 Sum_probs=49.0
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC-CcHHHHHHHHHHHHhh
Q 009647 452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKY 521 (530)
Q Consensus 452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~-~~~~i~~~A~~il~~~ 521 (530)
+..|..-|.++++.++..+|..|+.+.+.|.. .+...|-.-..++.|..+... .++.|++++..+|+.+
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~-~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGK-IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH-HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 44566667888999999999999999887653 233333334455556555544 5789999999998876
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=73.83 E-value=5.1 Score=33.37 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=48.6
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647 452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~ 521 (530)
+..+..-|.++++.++..+|..|+.+.+.|+. .+...+-.-..++.|..+....++.|+++...+++.+
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~-~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGK-IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 45556667788999999999999999887653 2223333334555555565557889999999999876
No 139
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=72.87 E-value=9.1 Score=31.40 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=62.4
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647 399 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 478 (530)
Q Consensus 399 ~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il 478 (530)
++|.|+..|++.+-.+...++-.|..+- + -+++.+.++|+++|..-+.-++.. +.
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~--------------~--------~l~p~I~~vl~s~D~~W~ywil~~---lv 86 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ--------------S--------IAMPHILTILQGNDIMWKYWVIKL---MI 86 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH--------------H--------HHHHHHHHHHHSSCHHHHHHHHHH---HG
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc--------------H--------hhHHHHHHHHHcCChHHHHHHHHH---HH
Confidence 5778899999999888877777776541 1 135667778888898877655443 33
Q ss_pred ccCCCCcchhHHHHhchHHHHHHHhcCC-----cHHHHHHHHHHHHhhcCC
Q 009647 479 RGMPNHEGTKLVEREDGIDAMERFQFHE-----NEDLRNMANGLVDKYFGE 524 (530)
Q Consensus 479 ~~~~~~~~~~~i~~~ggl~~L~~L~~~~-----~~~i~~~A~~il~~~f~~ 524 (530)
...+. .. ...-...|+++...+ .+++.+.|..||++||.+
T Consensus 87 ~~~~~----~~--~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 87 PYLIY----PN--KQLVKSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp GGCCH----HH--HHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred HcCCH----HH--HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 22111 11 112234577776664 679999999999999975
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=71.83 E-value=8.1 Score=32.51 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=51.3
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc------CCcHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF------HENEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~------~~~~~i~~~A~~il~~~ 521 (530)
++..|..-|.+.++.++..+|..|+.+.+.|+. .+...|-.-..++.|..+.. ..+++|+++...+++.+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~-~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK-RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH-HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 345566667889999999999999999887753 23344444556666776654 35789999999999876
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=71.82 E-value=8 Score=32.50 Aligned_cols=70 Identities=7% Similarity=0.035 Sum_probs=50.2
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC------CcHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH------ENEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~------~~~~i~~~A~~il~~~ 521 (530)
++..|..-|.++++.++..+|..|+.+.+.|+. .+...|-.-..++.|..+... .+++|++++..+|+.+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE-KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 345566667889999999999999999887753 233444444566666666542 4789999999988865
No 142
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=69.57 E-value=7.7 Score=33.50 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=49.5
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc------CCcHHHHHHHHHHHHhh
Q 009647 452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF------HENEDLRNMANGLVDKY 521 (530)
Q Consensus 452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~------~~~~~i~~~A~~il~~~ 521 (530)
+..|..-|.++++.++..+|..|+.+.+.|.. .+...|-.-..++.|..+.. ..+.+|++++..+|+.+
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~-~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGR-RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 45566777889999999999999999877642 23334444455666666654 23689999999988865
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=68.00 E-value=52 Score=27.44 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=63.7
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHH-HHHHhCCcHHHHHHHhcC------CChhHHHHHHHHHHHhcCC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK-QLIHSSEALALLLHLLST------SPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~-~~li~~~~l~~Li~lL~~------~~~~v~~eA~~aL~nl~~~ 428 (530)
.++..|..-+.+.++.++..|+.+|-.++..+...+ ..+....++..|+.++.. .+..|+..++..|..-+..
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 477788888899999999999998888876443444 445555788889999853 5678998888877666532
Q ss_pred CCCCCCCchhHHHHHHHHHhcCCh
Q 009647 429 PTEGEGKPKLIQEHLVSLVGRGCL 452 (530)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~~g~i 452 (530)
- ++.|+ +.+..+.|...|++
T Consensus 128 f---~~~p~-i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 128 L---PEEVK-IAEAYQMLKKQGIV 147 (149)
T ss_dssp C---TTCHH-HHHHHHHHHHTTCC
T ss_pred h---CCCch-HHHHHHHHHHCcCc
Confidence 1 12332 33444556666665
No 144
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=67.88 E-value=36 Score=32.11 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=68.5
Q ss_pred ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC--CcHHHHHHHhcC-------CChhHHHHHHHHHHHhcCCCCCCCCCc
Q 009647 366 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS--EALALLLHLLST-------SPFDIKKEVAYVLGNLCVSPTEGEGKP 436 (530)
Q Consensus 366 ~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~--~~l~~Li~lL~~-------~~~~v~~eA~~aL~nl~~~~~~~~~~~ 436 (530)
....+.++.-|+.+|+.....+|..+..+.+. .++..+..-|.. ....++|.-+.+|--|...+.
T Consensus 80 ~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~------ 153 (315)
T 3qml_C 80 ENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE------ 153 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST------
T ss_pred ccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH------
Confidence 33456789999999999989999888877753 455555544422 233567777788888776421
Q ss_pred hhHHHHHHHHHhcCChHHHHhhhccC--CHHHHHHHHHHHHHHHc
Q 009647 437 KLIQEHLVSLVGRGCLSGFIDLVRSA--DIEAARLGLQFMELVLR 479 (530)
Q Consensus 437 ~~~~~~~~~l~~~g~i~~L~~lL~~~--d~~i~~~~L~~L~~il~ 479 (530)
+ + ....+..|.+++... ++.++..+++.+..++.
T Consensus 154 -----~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 154 -----D---L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp -----T---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred -----h---h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 0 1 134556777777777 99999999999998884
No 145
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=66.25 E-value=26 Score=29.21 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=53.8
Q ss_pred HHHHhcCChHHHHhhhcc------CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC--cHHHHHHHH
Q 009647 444 VSLVGRGCLSGFIDLVRS------ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMAN 515 (530)
Q Consensus 444 ~~l~~~g~i~~L~~lL~~------~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~--~~~i~~~A~ 515 (530)
..+++.|++..+-.-|.. +...++...|.+|..+ + .....+.++|.=..+..+..|+ .+++++.|.
T Consensus 55 ~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----P--I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~ 128 (145)
T 2xpp_A 55 ESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----K--IHKEHLVTSGVGKIVYFYSINPKESKEVRASAK 128 (145)
T ss_dssp HHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----C--CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----C--CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHH
Confidence 567788888888877764 3457777777766664 2 2467788887777777788776 568999999
Q ss_pred HHHHhh
Q 009647 516 GLVDKY 521 (530)
Q Consensus 516 ~il~~~ 521 (530)
.|++++
T Consensus 129 ~Li~~W 134 (145)
T 2xpp_A 129 ALVQKW 134 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
No 146
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=60.58 E-value=46 Score=28.23 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=52.3
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHH
Q 009647 399 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELV 477 (530)
Q Consensus 399 ~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~i 477 (530)
++..|..-|.++++.++..|+..|-.++.++ |. .....+.+..++..|+.++.. .++.+...+++.|..-
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNc----G~-----~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANC----GK-----IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT----CH-----HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh----hH-----HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 3556677788899999999988888777653 32 233455667888888888875 5688888888877665
Q ss_pred Hc
Q 009647 478 LR 479 (530)
Q Consensus 478 l~ 479 (530)
-.
T Consensus 124 ~~ 125 (163)
T 1x5b_A 124 SE 125 (163)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 147
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=59.86 E-value=21 Score=29.54 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=51.2
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647 399 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 478 (530)
Q Consensus 399 ~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il 478 (530)
++..|..-|.++++.++..|+..|-.++.++ |. .....+.+..++..|+.++...++.+...+++.+..--
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc----G~-----~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNC----GK-----IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CH-----HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhc----CH-----HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3556666778888888888888877776553 32 22334556777888888888788999999888877654
No 148
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=55.80 E-value=1.7e+02 Score=29.26 Aligned_cols=237 Identities=11% Similarity=0.034 Sum_probs=119.6
Q ss_pred HHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcC-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC
Q 009647 132 TALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 210 (530)
Q Consensus 132 ~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~ 210 (530)
..++...|-.|+.++.++|+.+. -..-.+|+.|-..-...+..+.. .-..|.++.-......-....+.++|.|..+.
T Consensus 157 ~~id~~Fi~~Ll~lfdSeDpRER-d~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGf 235 (449)
T 2npp_B 157 KYIDQKFVLQLLELFDSEDPRER-DFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 235 (449)
T ss_dssp GTSCHHHHHHHHHTTTSSTHHHH-HHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSC
T ss_pred hhCCHHHHHHHHHHcCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcc
Confidence 34555677788888888774432 22455666665444334433332 22334444433222222346677888777543
Q ss_pred -----chhHHHHHhcCChhhhHhhcCCCCh-hHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHH
Q 009647 211 -----EEFRNVLLSQGALPPLARMMLPNKG-STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE 284 (530)
Q Consensus 211 -----~~~r~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~ 284 (530)
++.+..+ ...|+.|.+.+.. ..-...+.|+..++.. +|.. ...++..|++.=-..+..=..-
T Consensus 236 a~PLKeehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~L------~~~vi~~LLk~WP~tns~Kevl 303 (449)
T 2npp_B 236 ALPLKEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTL------TEPVVMALLKYWPKTHSPKEVM 303 (449)
T ss_dssp CSSCCHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-CGGG------HHHHHHHHHHTCCSSCHHHHHH
T ss_pred CCCCcHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhc-CcHh------HHHHHHHHHHhCCCCCchHHHH
Confidence 2333333 3445556555442 3345677777777743 2321 1123333333222233322222
Q ss_pred HHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHH
Q 009647 285 VAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVK 363 (530)
Q Consensus 285 a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~ 363 (530)
-+.-|..+.+. .+...+.+. ..++..+...+ .+.+..|...|+....|= .....+.+. ...++|.+..
T Consensus 304 FL~eleeile~~~~~ef~~i~-~~lF~~la~ci-~S~hfqVAErAL~~w~N~-----~i~~li~~n----~~~IlPii~p 372 (449)
T 2npp_B 304 FLNELEEILDVIEPSEFVKIM-EPLFRQLAKCV-SSPHFQVAERALYYWNNE-----YIMSLISDN----AAKILPIMFP 372 (449)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHH-TCSCHHHHHHHHGGGGCH-----HHHHHHHTT----HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHHCCH-----HHHHHHHhc----hhhhHHhhHH
Confidence 33334444432 233333222 23556666666 477777777777665542 111111111 1236677776
Q ss_pred Hh-----ccCcHhHHHHHHHHHHHHhcCCHHHHH
Q 009647 364 CL-----KSEHRVLKKEAAWVLSNIAAGSVEHKQ 392 (530)
Q Consensus 364 lL-----~~~~~~i~~~A~~~Lsnl~~~~~~~~~ 392 (530)
-| .|-+..|+..|..++.-+..-++....
T Consensus 373 ~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 373 SLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp HHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHH
Confidence 55 233678999999999887776655443
No 149
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=53.65 E-value=51 Score=28.96 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-----CChHHHHHHHHHHHH
Q 009647 90 SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-----SPDEQLLEAAWCLTN 164 (530)
Q Consensus 90 ~~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-----~~~~~~~eA~~~L~n 164 (530)
+...+++.+.+. + ..+..|+..|+.- |-+ ..++|.++.++... .+.............
T Consensus 10 q~yf~~It~a~~---~---~~r~~aL~sL~~D------~gL-----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~A 72 (196)
T 4atg_A 10 QLYFDKILSMIK---S---DMKDIAIECLEKE------SGL-----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFS 72 (196)
T ss_dssp HHHHHHHHHHHT---S---TTHHHHHHHHHHC------SSC-----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---h---HHHHHHHHHHhcC------CCh-----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 456677777774 2 3567777777662 222 34889999888521 122222223444444
Q ss_pred HhcCChhhHHhhc-CCcHHHHHhhcCC--CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHH
Q 009647 165 IAAGKQEETKALL-PALPLLIAHLGEK--SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVR 239 (530)
Q Consensus 165 ia~~~~~~~~~i~-~~v~~L~~lL~~~--~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~ 239 (530)
+..+..-..+..+ ..+|.++.++-.. ....+|+.|+..|+.||......- .-+...++..+.+.+.++ +....-
T Consensus 73 Ll~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~dp~~~l~t~Y 151 (196)
T 4atg_A 73 LIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMDPNRSEDSQY 151 (196)
T ss_dssp HHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcCCCCChHHHH
Confidence 4444332223223 4778777765331 123899999999999995321100 111223445566655543 567788
Q ss_pred HHHHHHHHhh
Q 009647 240 TAAWALSNLI 249 (530)
Q Consensus 240 ~a~~~L~nL~ 249 (530)
-|++.|..|-
T Consensus 152 GAi~GL~~lG 161 (196)
T 4atg_A 152 GALYCLSILS 161 (196)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhH
Confidence 8888888885
No 150
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=53.08 E-value=28 Score=29.07 Aligned_cols=71 Identities=14% Similarity=0.008 Sum_probs=53.3
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc------CCHHHHHHHHH
Q 009647 399 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS------ADIEAARLGLQ 472 (530)
Q Consensus 399 ~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~------~d~~i~~~~L~ 472 (530)
++..|..-|+++++.++..|+..|-.++.++ |. .....+.+..++..|+.++.. .++.+...+++
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNC----G~-----~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~ 109 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHC----GE-----KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIE 109 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CH-----HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc----CH-----HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHH
Confidence 3556677788999999999999988887654 42 233566678889999998874 46788888888
Q ss_pred HHHHHH
Q 009647 473 FMELVL 478 (530)
Q Consensus 473 ~L~~il 478 (530)
.+..--
T Consensus 110 li~~W~ 115 (148)
T 1mhq_A 110 ILFSWT 115 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 151
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=50.96 E-value=1.2e+02 Score=25.92 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=54.3
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHH-HHHhCCcHHHHHHHhcC------CChhHHHHHHHHHHHhc
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ-LIHSSEALALLLHLLST------SPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~-~li~~~~l~~Li~lL~~------~~~~v~~eA~~aL~nl~ 426 (530)
.++..|..-|.+.++.++..|+.+|-.++..+..... .+.+..++..|+.++.. .+..|+..++..|..-+
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4777888889999999999999999888876544444 45455788889998852 35788988888776654
No 152
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=50.90 E-value=31 Score=29.14 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=46.0
Q ss_pred hHHHHhhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHH-HHHHhc---CCcHHHHHHHHHHHHhh
Q 009647 452 LSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA-MERFQF---HENEDLRNMANGLVDKY 521 (530)
Q Consensus 452 i~~L~~lL~-~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~-L~~L~~---~~~~~i~~~A~~il~~~ 521 (530)
+..|..-|. .+++.++..+|..|+.+.+.|+. .+...+-.-..++. |..+.. .....|++++..+|+.+
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~-~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH-RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH-HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 345556666 47899999999999999887653 23333334445555 444442 34569999999998875
No 153
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=50.63 E-value=1.4e+02 Score=33.36 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=108.7
Q ss_pred hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc---CCCccchhhhHHHHhh-----
Q 009647 263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT---SNSLQLLIPVLRSLGN----- 334 (530)
Q Consensus 263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~---~~~~~v~~~al~~L~n----- 334 (530)
...++.-|+++-.+.-++|+..|-.+|......-+..... ++|.+++.|.. ..+.+-..-|+.+|..
T Consensus 131 ~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~ 205 (997)
T 1vsy_5 131 ENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHR 205 (997)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhh
Confidence 3466777888777888999999999998888644333322 35667776653 4455556667776652
Q ss_pred hhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCH------------------------HH
Q 009647 335 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV------------------------EH 390 (530)
Q Consensus 335 l~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~------------------------~~ 390 (530)
.+..+ .. .+ ..+++.|++....++++|++-+-.+...+..+.. ..
T Consensus 206 ~~~~d---~~-~~-------~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~ 274 (997)
T 1vsy_5 206 KLMTD---YK-DI-------GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQ 274 (997)
T ss_dssp HGGGC---HH-HH-------HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSH
T ss_pred HHhcC---hH-HH-------HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHH
Confidence 11111 00 11 2466667777666777777666655444443100 00
Q ss_pred HHH-----------HHh--CCcHHHHHHHh-cCCC--hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHH
Q 009647 391 KQL-----------IHS--SEALALLLHLL-STSP--FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG 454 (530)
Q Consensus 391 ~~~-----------li~--~~~l~~Li~lL-~~~~--~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~ 454 (530)
++. ..+ .++...|+..+ .+.. -+....++..|.++....+ ..-. ..++..
T Consensus 275 ~~~~~~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d-~~~~-------------~~~v~~ 340 (997)
T 1vsy_5 275 VEAVKLAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE-SKPD-------------KRAVFS 340 (997)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS-CCCC-------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-CCCC-------------HHHHHH
Confidence 111 111 12334444555 2334 5566666777666654321 1111 124456
Q ss_pred HHhhhccCCHHHHHHHHHHHHHHHc
Q 009647 455 FIDLVRSADIEAARLGLQFMELVLR 479 (530)
Q Consensus 455 L~~lL~~~d~~i~~~~L~~L~~il~ 479 (530)
+++.+.++.|.+...++.++..|+.
T Consensus 341 ~~~~l~~dhp~~R~~a~~~l~~il~ 365 (997)
T 1vsy_5 341 IISQISTKHPEIIHLVVKSLLSTCN 365 (997)
T ss_dssp HHGGGGGCCHHHHHHHHHHHTHHHH
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 7888888999999999998888875
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.59 E-value=18 Score=32.65 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=47.8
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHH-hcCCcHHHHHHHHHHHHhh
Q 009647 452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENEDLRNMANGLVDKY 521 (530)
Q Consensus 452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L-~~~~~~~i~~~A~~il~~~ 521 (530)
+..|..-|.++++.++..+|..|+.+.+.++. .+...|-.-..++.|..| ....+++|++++..+|+.+
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~-~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQ-TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAW 116 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH-HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch-HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 45566667889999999999999999876643 122333333444555444 3456789999999998875
No 155
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=49.00 E-value=1.9e+02 Score=28.49 Aligned_cols=229 Identities=11% Similarity=0.041 Sum_probs=111.3
Q ss_pred HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcC-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC---
Q 009647 135 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG--- 210 (530)
Q Consensus 135 ~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~--- 210 (530)
+...|-.|+.++.++|+.+. -..-.+|+.|-+.-...+..+.. .-..|.++.-......-....+.++|.|..+.
T Consensus 127 d~~Fi~~Ll~lfdSeDprER-~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~P 205 (403)
T 3fga_B 127 DQKFVLQLLELFDSEDPRER-DFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 205 (403)
T ss_dssp CHHHHHHHHHGGGCSCHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHcCCCChHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCC
Confidence 34456678888888875432 33556667666544444443332 22344444433222222235566666666432
Q ss_pred --chhHHHHHhcCChhhhHhhcCCCCh-hHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHH
Q 009647 211 --EEFRNVLLSQGALPPLARMMLPNKG-STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAW 287 (530)
Q Consensus 211 --~~~r~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~ 287 (530)
++.+..+ ...|+.|.+.+.. ..-...+.|+..++.. +|... ..++..|++.=-..++.=..--+.
T Consensus 206 Lkeehk~fl-----~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-Dp~L~------~~vi~~LLk~WP~tns~KevlFL~ 273 (403)
T 3fga_B 206 LKEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLT------EPVVMALLKYWPKTHSPKEVMFLN 273 (403)
T ss_dssp CCHHHHHHH-----HHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-CGGGH------HHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred chHHHHHHH-----HHHHHHHHcCCcchhhHHHHHHHHHHHHHh-CchhH------HHHHHHHHHhCCCCCcHHHHHHHH
Confidence 1222222 2345555555443 3346777777777743 23221 123333333222333332233333
Q ss_pred HHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh-
Q 009647 288 VVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL- 365 (530)
Q Consensus 288 ~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL- 365 (530)
-+..+... +++..+.+. ..++..+...+ .+++..|...|+....|= .....+.+. ...++|.+..-|
T Consensus 274 Ele~iLe~~~~~~f~~i~-~~lf~~la~ci-~S~hfqVAErAL~~wnNe-----~i~~li~~n----~~~IlPii~p~L~ 342 (403)
T 3fga_B 274 ELEEILDVIEPSEFVKIM-EPLFRQLAKCV-SSPHFQVAERALYYWNNE-----YIMSLISDN----AAKILPIMFPSLY 342 (403)
T ss_dssp HHHHHHTTCCHHHHHHHH-HHHHHHHHHHH-TCSCHHHHHHHHGGGGCH-----HHHHHHHTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHH-HHHHHHHHHHH-CCCCHHHHHHHHHHhccH-----HHHHHHHHh----HHHHHHHHHHHHH
Confidence 34444432 233333222 23556666666 477777777777665431 111111110 123555555544
Q ss_pred ----ccCcHhHHHHHHHHHHHHhcCC
Q 009647 366 ----KSEHRVLKKEAAWVLSNIAAGS 387 (530)
Q Consensus 366 ----~~~~~~i~~~A~~~Lsnl~~~~ 387 (530)
.|-+..|+..|..++.-+..-+
T Consensus 343 ~~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 343 RNSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp HTTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhC
Confidence 3447788888888887775543
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.88 E-value=24 Score=31.73 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=46.2
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHh-cCCcHHHHHHHHHHHHhh
Q 009647 452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQ-FHENEDLRNMANGLVDKY 521 (530)
Q Consensus 452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~-~~~~~~i~~~A~~il~~~ 521 (530)
+..|..-|.++++.++..+|..|+.+...++. .+...|-.-.-++.|..+. ...+.+|++++..+++.+
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~-~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 113 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA-PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTW 113 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH-HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 34556667789999999999999999876642 1222233333444444443 356789999998888765
No 157
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=48.16 E-value=12 Score=23.51 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=24.2
Q ss_pred HHh-hhcCchHhhhhHHHHHHHHhHhhHHHHHHhh
Q 009647 25 VIW-FLVGNVAAQRRRQNAVTVGKERRESLVRAKR 58 (530)
Q Consensus 25 ~~~-~~~~~~~~~rr~~~~~~lrk~~r~~~l~~kR 58 (530)
.|| ++...+...||++ ..+.-|++|-+.++.-|
T Consensus 6 qYK~k~~~~~q~~rRr~-~L~~QK~~R~D~~nhaR 39 (40)
T 2p8q_B 6 QYKSKYSSLEQSERRRR-LLELQKSKRLDYVNHAR 39 (40)
T ss_dssp GTTCCCCSCSTTHHHHH-HHHHHHHHHHHHHHTTT
T ss_pred hhccccchhhHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 466 4456677777777 68888999988887655
No 158
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=45.24 E-value=60 Score=27.03 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=47.5
Q ss_pred ChHHHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC------cHHHHHHHHHHHHhhc
Q 009647 451 CLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE------NEDLRNMANGLVDKYF 522 (530)
Q Consensus 451 ~i~~L~~lL~~--~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~------~~~i~~~A~~il~~~f 522 (530)
++..|..-|.. .+...+.++|..|+.++..++............-+..|..+++.+ ...|+++|..|++-.-
T Consensus 60 Im~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 60 IMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhC
Confidence 44556665655 368899999999999998875421112222334455666655543 3589999999998554
Q ss_pred CC
Q 009647 523 GE 524 (530)
Q Consensus 523 ~~ 524 (530)
++
T Consensus 140 D~ 141 (148)
T 1inz_A 140 DE 141 (148)
T ss_dssp SC
T ss_pred CH
Confidence 33
No 159
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=44.16 E-value=88 Score=26.68 Aligned_cols=73 Identities=10% Similarity=0.118 Sum_probs=53.6
Q ss_pred HHHHHhcCChHHHHhhhcc------CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC--cHHHHHHH
Q 009647 443 LVSLVGRGCLSGFIDLVRS------ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMA 514 (530)
Q Consensus 443 ~~~l~~~g~i~~L~~lL~~------~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~--~~~i~~~A 514 (530)
...+++.|++..+-.-|.. +...++...|.+|..+ + .....+.++|.=..+..+..|+ .+++++.|
T Consensus 69 ~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----P--I~~e~Lk~SglGkvV~~l~k~~~et~~nkrla 142 (170)
T 3nfq_A 69 ADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----P--VKTEHLKESGLGRVVIFYTKSKRVEAQLARLA 142 (170)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----C--CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----C--CCHHHHhhCCCCceeeehhcCCcccHHHHHHH
Confidence 3567788998888887774 3357777777766654 3 2456777887666777777776 46899999
Q ss_pred HHHHHhh
Q 009647 515 NGLVDKY 521 (530)
Q Consensus 515 ~~il~~~ 521 (530)
..|++++
T Consensus 143 ~~Li~~W 149 (170)
T 3nfq_A 143 EKLIAEW 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 160
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=42.08 E-value=19 Score=28.03 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=30.4
Q ss_pred chhHHHHhchHHHHHHHhcC-CcHHHHHHHHHHHHhhc
Q 009647 486 GTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKYF 522 (530)
Q Consensus 486 ~~~~i~~~ggl~~L~~L~~~-~~~~i~~~A~~il~~~f 522 (530)
....+.+.+.=..+..|..| ++++|...|..|+.++-
T Consensus 46 T~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK 83 (103)
T 1wjt_A 46 SIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 83 (103)
T ss_dssp CHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 45777777777778888887 99999999999998763
No 161
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=41.81 E-value=2.2e+02 Score=31.80 Aligned_cols=187 Identities=8% Similarity=0.048 Sum_probs=105.0
Q ss_pred CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC----CChhHHHHHHHHHH--HhhcCC
Q 009647 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP----NKGSTVRTAAWALS--NLIKGP 252 (530)
Q Consensus 179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~--nL~~~~ 252 (530)
.+.-|+++-.+ .-++|+..|-.+|..+..--+..+..+ +|.+++.|+. .+.+-.+.|+++|. .+...
T Consensus 134 ll~dL~~Ls~S-~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~- 206 (997)
T 1vsy_5 134 LLVDIIQLATS-LYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK- 206 (997)
T ss_dssp HHHHHHHHHTS-SCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-
T ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-
Confidence 34555565444 678999999999999887655555443 5666766653 45666777777765 22211
Q ss_pred CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC--------------------chh----HHHH-----
Q 009647 253 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS--------------------NVA----TSLL----- 303 (530)
Q Consensus 253 ~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--------------------~~~----~~~i----- 303 (530)
...+.-....+++.|++....+.++++.-+-.+...+...- ++. ++..
T Consensus 207 ---~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~ 283 (997)
T 1vsy_5 207 ---LMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKK 283 (997)
T ss_dssp ---GGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTT
T ss_pred ---HhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 00111113467777777766666665544433333332210 000 0000
Q ss_pred -----Hh---cCchHHHHHHHhcCCC--ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH
Q 009647 304 -----VK---SGVLQLLVERLATSNS--LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 373 (530)
Q Consensus 304 -----~~---~g~l~~Lv~lL~~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~ 373 (530)
.. .++...+++.+..... ......+++.|-++....+... ...++..+++.+.++++.+|
T Consensus 284 ~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~----------~~~~v~~~~~~l~~dhp~~R 353 (997)
T 1vsy_5 284 KKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKP----------DKRAVFSIISQISTKHPEII 353 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCC----------CHHHHHHHHGGGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCC----------CHHHHHHHHHhhcCCCHHHH
Confidence 00 1223333444422233 5555566677555554333211 34688889999999999999
Q ss_pred HHHHHHHHHHhc
Q 009647 374 KEAAWVLSNIAA 385 (530)
Q Consensus 374 ~~A~~~Lsnl~~ 385 (530)
+.|..++..+..
T Consensus 354 ~~a~~~l~~il~ 365 (997)
T 1vsy_5 354 HLVVKSLLSTCN 365 (997)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988866643
No 162
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=40.34 E-value=2e+02 Score=25.63 Aligned_cols=139 Identities=12% Similarity=0.008 Sum_probs=82.0
Q ss_pred HHhcCCCChHHHHHHHHHHHHHhc-CChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHH-HHHHhhcCCCchhHHHHHhcC
Q 009647 144 QCLAFGSPDEQLLEAAWCLTNIAA-GKQEETKALLPALPLLIAHLGEKSSSPVAEQCA-WALGNVAGEGEEFRNVLLSQG 221 (530)
Q Consensus 144 ~lL~~~~~~~~~~eA~~~L~nia~-~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~-~~L~nla~d~~~~r~~~~~~g 221 (530)
.+..++ ..+.+.-|+..+..... .++ ..++.+-.++...++.++....+ .++|.+....++ .
T Consensus 68 ~L~~~~-~~E~r~~ai~~l~~~~k~~~~-------~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~--------~ 131 (232)
T 3jxy_A 68 ELWDLP-EREFQAAALDIMQKYKKHINE-------THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE--------L 131 (232)
T ss_dssp HHHTSS-BHHHHHHHHHHHHHTGGGCCG-------GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG--------G
T ss_pred HHhcCc-HHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH--------H
Confidence 444443 35565656666553321 111 12344444554446777777653 455655543322 1
Q ss_pred ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHH
Q 009647 222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301 (530)
Q Consensus 222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~ 301 (530)
..+.+...+.+++.-+++.++-++ +....... ....++.+..++.+++.-|+..+.|+|..++..+++...
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d-------~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMD-------EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCC-------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCC-------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 345677778889999999887654 32211111 123455666777888888999999999999987776665
Q ss_pred HHHhcC
Q 009647 302 LLVKSG 307 (530)
Q Consensus 302 ~i~~~g 307 (530)
..++..
T Consensus 203 ~fl~~~ 208 (232)
T 3jxy_A 203 EYVQNN 208 (232)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 555443
No 163
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=39.23 E-value=2e+02 Score=25.35 Aligned_cols=145 Identities=14% Similarity=-0.035 Sum_probs=86.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHhcC-ChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc
Q 009647 142 LVQCLAFGSPDEQLLEAAWCLTNIAAG-KQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ 220 (530)
Q Consensus 142 Lv~lL~~~~~~~~~~eA~~~L~nia~~-~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~ 220 (530)
+.++..++ ..+.++-|+..+...... +++. ++.+-.++..-++.++.+..+.+++++....++.
T Consensus 60 ~~~L~~s~-~~E~r~la~~~l~~~~~~~~~~~-------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~------- 124 (220)
T 2b6c_A 60 IEAYYQKT-EREYQYVAIDLALQNVQRFSLEE-------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE------- 124 (220)
T ss_dssp HHHHHTSS-SHHHHHHHHHHHHHTGGGCCHHH-------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG-------
T ss_pred HHHHHcCc-hhHHHHHHHHHHHHHHhhCCHHH-------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH-------
Confidence 33444443 355666677777765422 2221 2222333433467888888777788776533321
Q ss_pred CChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhH
Q 009647 221 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 300 (530)
Q Consensus 221 g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 300 (530)
..+.+...+.+++.-+++.++-++...... .. . ...++.+..++.+++.-|+..+.|+|..++..+++..
T Consensus 125 -~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~--~~--~-----~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 125 -LPTIFALFYGAENFWNRRVALNLQLMLKEK--TN--Q-----DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp -HHHHHHHHTTCSSHHHHHHHHHTTTTCGGG--CC--H-----HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -HHHHHHHHHcCCCHHHHHHHHHHHHHHHHC--CC--H-----HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 234566778888999998887755222111 11 1 2335555567778888899999999999998776655
Q ss_pred HHHHhcCchHH
Q 009647 301 SLLVKSGVLQL 311 (530)
Q Consensus 301 ~~i~~~g~l~~ 311 (530)
...+...-++.
T Consensus 195 ~~fl~~~~l~~ 205 (220)
T 2b6c_A 195 EELMKELVLSP 205 (220)
T ss_dssp HHHHHHSCCCH
T ss_pred HHHHhhccCCH
Confidence 55544333333
No 164
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.54 E-value=1.5e+02 Score=26.42 Aligned_cols=71 Identities=10% Similarity=0.194 Sum_probs=51.6
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH-HHHHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHHHhc
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE-HKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~-~~~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~ 426 (530)
.++..|..-|.+.++.++..|+.+|-.++..... ....+....++..|+.++. ..+..|+..++..|..-+
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4777888889999999999999888888764333 3333444567777877774 356789988888776654
No 165
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=32.58 E-value=2.6e+02 Score=24.62 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=74.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchh
Q 009647 268 DAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 346 (530)
Q Consensus 268 ~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 346 (530)
..+..+..++.-+.+.-++..+.+.... .++. ++.+-.++..-++-.+.-..+++++.++...+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 3444556666667777777777665422 2211 111111222233444444434667777643321
Q ss_pred cccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647 347 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 347 i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~ 426 (530)
.+.+.+.....+++.-+|+.|+-.+ +.......... +++.+-.++.+++.-|++..+|+|..+.
T Consensus 124 ---------~~~~~i~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~ 187 (220)
T 2b6c_A 124 ---------ELPTIFALFYGAENFWNRRVALNLQ--LMLKEKTNQDL-----LKKAIIYDRTTEEFFIQKAIGWSLRQYS 187 (220)
T ss_dssp ---------GHHHHHHHHTTCSSHHHHHHHHHTT--TTCGGGCCHHH-----HHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHcCCCHHHHHHHHHHH--HHHHHCCCHHH-----HHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 2556778899999988888877644 21111111111 2344444678888899999999999997
Q ss_pred CC
Q 009647 427 VS 428 (530)
Q Consensus 427 ~~ 428 (530)
..
T Consensus 188 k~ 189 (220)
T 2b6c_A 188 KT 189 (220)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 166
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=30.65 E-value=45 Score=22.46 Aligned_cols=31 Identities=10% Similarity=-0.167 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhhh-cCchHhhhhHHHHHHH
Q 009647 14 RKMKIIMKMCSVIWFL-VGNVAAQRRRQNAVTV 45 (530)
Q Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~~~rr~~~~~~l 45 (530)
-||++-+ +.+.||.. +|+....|||+.+.++
T Consensus 5 lkMskqE-vK~E~Ke~EGdP~iK~r~R~~~re~ 36 (54)
T 3bzy_A 5 ASMSKDE-VKREAKDTDGNPEIKGERRRLHSEI 36 (54)
T ss_pred cCCCHHH-HHHHHHhccCCHHHHHHHHHHHHHH
Confidence 4666655 88899955 8999988888765543
No 167
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=30.60 E-value=74 Score=29.15 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=74.3
Q ss_pred chhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHH
Q 009647 324 LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 403 (530)
Q Consensus 324 v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~L 403 (530)
.+-|++..+.-++...... . . +...+-..+.+..+..+--++++++|+..+..-..+.+.+......+
T Consensus 70 ~~fP~lDllRl~~~~~~~~-~-~----------l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i 137 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-S-D----------IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSI 137 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-G-G----------GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTH
T ss_pred ccchHHHHHHHHHcCCchH-H-H----------HHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHH
Confidence 3567777777666554321 1 1 11122223345567889999999999987654234444332334445
Q ss_pred HHHhcC--------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc---------cCCHHH
Q 009647 404 LHLLST--------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR---------SADIEA 466 (530)
Q Consensus 404 i~lL~~--------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~---------~~d~~i 466 (530)
+..+.+ .+..++-.++..+.|++........ +......+++.+. ..|++.
T Consensus 138 ~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-------------~~e~~~~l~~~i~~~~~~~e~~~~d~Ea 204 (253)
T 3gae_A 138 FETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-------------DLELLPIVADAINTKYGPLEEYQECEEA 204 (253)
T ss_dssp HHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-------------CTTHHHHHHHHHHTTTTTSHHHHHSHHH
T ss_pred HHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-------------hHHHHHHHHHHHHHHhcccccccCCHHH
Confidence 544421 2446888888899998752100000 0112233444443 237888
Q ss_pred HHHHHHHHHHHHcc
Q 009647 467 ARLGLQFMELVLRG 480 (530)
Q Consensus 467 ~~~~L~~L~~il~~ 480 (530)
+.-+|-+|.+++..
T Consensus 205 ~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 205 AYRLTVAYGNLATV 218 (253)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 88899999998854
No 168
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.10 E-value=3e+02 Score=24.25 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=51.8
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHH-HHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHHHhc
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK-QLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLC 426 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~-~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~ 426 (530)
.++..|..-|.+.++.++..|+.+|-.++....... ..+.+..++..|+.++. ..+..|++.++..+..-+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 477778888899999999999999998887654444 33444567888888875 356788887776665443
No 169
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=29.08 E-value=2.5e+02 Score=27.73 Aligned_cols=131 Identities=14% Similarity=0.040 Sum_probs=76.1
Q ss_pred chhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHH
Q 009647 324 LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 403 (530)
Q Consensus 324 v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~L 403 (530)
.+-|++..+.-++...... .. +...+-..+.+..+..+--++++++|+..+..-..+.+.+......+
T Consensus 242 ~~FPaLDLLRl~v~~p~~~-~~-----------l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i 309 (425)
T 3pst_A 242 IKTPAYDIVRLIVKKLPYS-SD-----------IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSI 309 (425)
T ss_dssp CCHHHHHHHHHHGGGCSCG-GG-----------GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHH
T ss_pred cccHHHHHHHHHHcCCchH-HH-----------HHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHH
Confidence 3667888877777554321 11 22222233445567889999999999977653223333222335566
Q ss_pred HHHhcC--------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc---------cCCHHH
Q 009647 404 LHLLST--------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR---------SADIEA 466 (530)
Q Consensus 404 i~lL~~--------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~---------~~d~~i 466 (530)
+..+.. .+..++..++..+.|++... .+.-.+...+..+...+. ..|++.
T Consensus 310 ~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~-------------~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA 376 (425)
T 3pst_A 310 FETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV-------------TKGNSDLELLPIVADAINTKYGPLEEYQECEEA 376 (425)
T ss_dssp HHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-------------HHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHH
T ss_pred HHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHH-------------hcccchHHHHHHHHHHHHhhccccccccCCHHH
Confidence 665531 13457888888889987420 000001123345555554 358889
Q ss_pred HHHHHHHHHHHHc
Q 009647 467 ARLGLQFMELVLR 479 (530)
Q Consensus 467 ~~~~L~~L~~il~ 479 (530)
..-+|-+|.+++.
T Consensus 377 ~yRlLVALGtLv~ 389 (425)
T 3pst_A 377 AYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888899988874
No 170
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=28.20 E-value=45 Score=27.67 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=41.9
Q ss_pred ChHHHHhhhccC--CHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC------cHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRSA--DIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE------NEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~~--d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~------~~~i~~~A~~il~~~ 521 (530)
++..|..-|... +...+.++|..|+.++..++............-+..|..+++.+ ...|+++|..|++-.
T Consensus 42 Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll 120 (144)
T 1eyh_A 42 IMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALL 120 (144)
T ss_dssp HHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHH
Confidence 445555556553 67899999999999998875421111111222334444444322 247899998888743
No 171
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=27.53 E-value=51 Score=23.45 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhcCCCCC
Q 009647 508 EDLRNMANGLVDKYFGEDYG 527 (530)
Q Consensus 508 ~~i~~~A~~il~~~f~~~~~ 527 (530)
++|++.+..-+++||+++++
T Consensus 50 ~~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 50 EDIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHhCccccC
Confidence 57889999999999988665
No 172
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=27.06 E-value=84 Score=26.24 Aligned_cols=69 Identities=7% Similarity=0.191 Sum_probs=42.0
Q ss_pred hHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHH-HHHHhc---CCcHHHHHHHHHHHHhh
Q 009647 452 LSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA-MERFQF---HENEDLRNMANGLVDKY 521 (530)
Q Consensus 452 i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~-L~~L~~---~~~~~i~~~A~~il~~~ 521 (530)
+..|..-|.. .++.++..+|..|+.+.+.|+. .+...|-.-..++. |..+.. +...+|+++...+|+.+
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~-~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~W 128 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGP-SFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTW 128 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCH-HHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCH-HHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Confidence 3445555553 5788888899999998887653 12222222223332 333432 34568999999999876
No 173
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=26.64 E-value=40 Score=28.22 Aligned_cols=71 Identities=13% Similarity=0.187 Sum_probs=42.0
Q ss_pred ChHHHHhhhcc---CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC------cHHHHHHHHHHHHhh
Q 009647 451 CLSGFIDLVRS---ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE------NEDLRNMANGLVDKY 521 (530)
Q Consensus 451 ~i~~L~~lL~~---~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~------~~~i~~~A~~il~~~ 521 (530)
++..|..-|.. .+...+.++|..|+.++..+++......-+...-+..|.++++.+ ...|+++|..|++-.
T Consensus 48 Im~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL 127 (150)
T 3onk_A 48 ILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELL 127 (150)
T ss_dssp HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHH
Confidence 34555555543 368999999999999998875411111111222333344444332 248999999988743
No 174
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=25.45 E-value=51 Score=32.02 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=59.7
Q ss_pred CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh--------ccCcHhHHHHHHHHHHHHhcCCHHHH
Q 009647 320 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL--------KSEHRVLKKEAAWVLSNIAAGSVEHK 391 (530)
Q Consensus 320 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL--------~~~~~~i~~~A~~~Lsnl~~~~~~~~ 391 (530)
..+..+.-++|+++|+.....-..+.+.. ......++..+ ...+..++..++..+-|++.......
T Consensus 211 ~~~~n~MltlR~laNlF~~~~~g~~ll~~------~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~ 284 (362)
T 3l3f_X 211 KNITLTMLTVRILVNCFNNENWGVKLLES------NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN 284 (362)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTS------HHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CChhHHHHHHHHHHHhccCcchHHHHHhc------chhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc
Confidence 34566778999999998766422222211 11233334333 12356889999999999976321100
Q ss_pred HHHHhCCcHHHHHHHhc---------CCChhHHHHHHHHHHHhcC
Q 009647 392 QLIHSSEALALLLHLLS---------TSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 392 ~~li~~~~l~~Li~lL~---------~~~~~v~~eA~~aL~nl~~ 427 (530)
.+..+++.+..++. ..+.+....++-||+|++.
T Consensus 285 ---~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 285 ---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp ---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 01224455666665 2477888999999999985
No 175
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=24.98 E-value=1e+02 Score=30.61 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=61.4
Q ss_pred CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc--------cCcHhHHHHHHHHHHHHhcCCHHH
Q 009647 319 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK--------SEHRVLKKEAAWVLSNIAAGSVEH 390 (530)
Q Consensus 319 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~--------~~~~~i~~~A~~~Lsnl~~~~~~~ 390 (530)
...+..+.-++|+++|+.....-..+.+.. ......++..+. ..+..++..++..+-|++......
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~------~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~ 346 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLES------NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG 346 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTS------HHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhC------chhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc
Confidence 344566778999999998766422222221 223455555442 225678999999999997632110
Q ss_pred HHHHHhCCcHHHHHHHhc---------CCChhHHHHHHHHHHHhcC
Q 009647 391 KQLIHSSEALALLLHLLS---------TSPFDIKKEVAYVLGNLCV 427 (530)
Q Consensus 391 ~~~li~~~~l~~Li~lL~---------~~~~~v~~eA~~aL~nl~~ 427 (530)
. .+..++..+...+. ..+.+....++-||+|++.
T Consensus 347 ~---~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 347 N---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp C---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred c---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 0 01224455666554 2477888899999999985
No 176
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.93 E-value=76 Score=29.06 Aligned_cols=98 Identities=11% Similarity=0.008 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCch-hHHHHHhcCChhhhHhhcCC--------CChhHHHHHHHHHHHhhcC--CCCCchhh
Q 009647 191 SSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLP--------NKGSTVRTAAWALSNLIKG--PDPKPATE 259 (530)
Q Consensus 191 ~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~lL~~--------~~~~~~~~a~~~L~nL~~~--~~~~~~~~ 259 (530)
.++..+--++++++|+-.. +. .|..+........++..+.+ ++..++-.++..+.|++-. +.+. .
T Consensus 102 ~~~~~~ml~lR~l~NlF~~-~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-~-- 177 (253)
T 3gae_A 102 KNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-D-- 177 (253)
T ss_dssp SSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-C--
T ss_pred CchhHHHHHHHHHHHcccC-CchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-h--
Confidence 5678999999999999884 45 56666554334455544421 2456777788888888752 1111 0
Q ss_pred HHHhhchHHHHHHHhc---------cCCHHHHHHHHHHHHHhhcCC
Q 009647 260 LIKVDGLLDAILRHLK---------RADEELTTEVAWVVVYLSALS 296 (530)
Q Consensus 260 ~v~~~~~l~~L~~lL~---------~~d~~v~~~a~~~L~~L~~~~ 296 (530)
......++..+. ..|+|....++-+|++|...+
T Consensus 178 ----~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 178 ----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp ----TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 123334444443 237788888888998888633
No 177
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=23.87 E-value=2.2e+02 Score=23.70 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=48.2
Q ss_pred cHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHH-HHhhhcc---CCHHHHHHHHHH
Q 009647 399 ALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG-FIDLVRS---ADIEAARLGLQF 473 (530)
Q Consensus 399 ~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~-L~~lL~~---~d~~i~~~~L~~ 473 (530)
++..|..-|+ ++++.++..|+..|-.++.++ |. .....+.+..++.. |+.++.. .+..+...+++.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNc----G~-----~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~l 124 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNC----GH-----RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNL 124 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS----CH-----HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh----CH-----HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 3456667776 578889988988888777653 32 23345667778887 7787742 345788888887
Q ss_pred HHHHH
Q 009647 474 MELVL 478 (530)
Q Consensus 474 L~~il 478 (530)
|..--
T Consensus 125 i~~W~ 129 (157)
T 1elk_A 125 IQSWA 129 (157)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 178
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=23.46 E-value=2.9e+02 Score=26.63 Aligned_cols=102 Identities=14% Similarity=0.016 Sum_probs=60.2
Q ss_pred hccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC--------CChhHHHHHHHHHHHhcCCCCCCCCCc
Q 009647 365 LKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--------SPFDIKKEVAYVLGNLCVSPTEGEGKP 436 (530)
Q Consensus 365 L~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~--------~~~~v~~eA~~aL~nl~~~~~~~~~~~ 436 (530)
+.+..+..+--++++++|+..+..-..+.+.+......++..+.. .+..++..++..+.|++...
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~------- 280 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV------- 280 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHH-------
Confidence 345567889999999999977653223333221123344444421 23457888888889987420
Q ss_pred hhHHHHHHHHHhcCChHHHHhhhc---------cCCHHHHHHHHHHHHHHHc
Q 009647 437 KLIQEHLVSLVGRGCLSGFIDLVR---------SADIEAARLGLQFMELVLR 479 (530)
Q Consensus 437 ~~~~~~~~~l~~~g~i~~L~~lL~---------~~d~~i~~~~L~~L~~il~ 479 (530)
.+.-.+...+..+...+. ..|++...-+|-+|.+++.
T Consensus 281 ------~~~~~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 281 ------TKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp ------HHTCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred ------hcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 000001123345555555 3588999888999998874
No 179
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=22.79 E-value=56 Score=26.06 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCC
Q 009647 508 EDLRNMANGLVDKYFGEDYGLDE 530 (530)
Q Consensus 508 ~~i~~~A~~il~~~f~~~~~~~~ 530 (530)
++|++.+..-++.||+++++++|
T Consensus 105 ~~I~~~v~e~~~~fFp~~~~~~~ 127 (127)
T 3on0_A 105 PAIDKFAREQVSIFFPDDEDDQE 127 (127)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCC-
T ss_pred HHHHHHHHHHHHhcCCCcccccC
Confidence 46778877788999999999876
No 180
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=22.72 E-value=9.2e+02 Score=27.75 Aligned_cols=129 Identities=10% Similarity=0.048 Sum_probs=66.7
Q ss_pred cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh-ccCcHhHHHHHHHHHHHHhcC---CHHHHHHHHh--
Q 009647 323 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL-KSEHRVLKKEAAWVLSNIAAG---SVEHKQLIHS-- 396 (530)
Q Consensus 323 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL-~~~~~~i~~~A~~~Lsnl~~~---~~~~~~~li~-- 396 (530)
.+...-+++|.++....+. .++..++-++ .+.+...++.|-.++.+-+.. +.......+.
T Consensus 325 ~i~eAwlK~I~~~~~~~~h--------------k~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h 390 (1323)
T 3s4w_B 325 TISEAWFKAIERIESAAEH--------------KSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTH 390 (1323)
T ss_dssp HHHHHHHHHHHHGGGSTTC--------------CTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccccc--------------chhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhh
Confidence 4445566677766543321 2344433333 233445677888888776553 2232222221
Q ss_pred ----CCcHHHHHHH----hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHH
Q 009647 397 ----SEALALLLHL----LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 468 (530)
Q Consensus 397 ----~~~l~~Li~l----L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~ 468 (530)
...++.++.+ +.+.++.++.-+...-..+-..-+ . ..++.++..|+.-..++...-+.
T Consensus 391 ~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd----------~----~~qqeVl~~Lv~hi~sg~~~eVd 456 (1323)
T 3s4w_B 391 YLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD----------T----YCQQEVVGALVTHVCSGTEAEVD 456 (1323)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC----------H----HHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc----------c----hhHHHHHHHHHhhhcCCCcHHHH
Confidence 3455655543 467888888777666555443211 1 11223445555554555555566
Q ss_pred HHHHHHHHHHc
Q 009647 469 LGLQFMELVLR 479 (530)
Q Consensus 469 ~~L~~L~~il~ 479 (530)
.+|++|..+..
T Consensus 457 ~ALdvL~~L~~ 467 (1323)
T 3s4w_B 457 TALDVLLELIV 467 (1323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 67777766653
No 181
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=22.01 E-value=55 Score=26.53 Aligned_cols=63 Identities=8% Similarity=0.167 Sum_probs=40.5
Q ss_pred hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428 (530)
Q Consensus 356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 428 (530)
..+...++-|+.....|+..+.|++.|.-. . .. ++..+.+.+....+.-+-...+.+..++.+
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~-a----~~-----iv~~i~~~l~~~~~~~KL~~LYLindIl~n 69 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHHRKH-A----GP-----IVSVWHRELRKAKSNRKLTFLYLANDVIQN 69 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHTGGG-H----HH-----HHHHHHHHHHHSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHH-H----HH-----HHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 345555566677788999999999988632 1 22 233445555555556667777777777544
No 182
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=21.35 E-value=78 Score=27.21 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=41.0
Q ss_pred hHHHHhhh-cc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC------cHHHHHHHHHHHHhhc
Q 009647 452 LSGFIDLV-RS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE------NEDLRNMANGLVDKYF 522 (530)
Q Consensus 452 i~~L~~lL-~~--~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~------~~~i~~~A~~il~~~f 522 (530)
+..|..-| .. .+...+.++|..|+.++..+++......-+...-+..|.++++-+ ...|+++|..|++-.-
T Consensus 72 m~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 72 MNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQ 151 (176)
T ss_dssp HHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHC
Confidence 44554543 33 578899999999999998875311011111122233344444321 2469999998887543
No 183
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=21.22 E-value=75 Score=20.24 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=11.9
Q ss_pred HHHHHHHHhHhhHHHHH
Q 009647 39 RQNAVTVGKERRESLVR 55 (530)
Q Consensus 39 ~~~~~~lrk~~r~~~l~ 55 (530)
.+....||++||+..+.
T Consensus 16 a~EkaRLrRERR~aKi~ 32 (46)
T 3sjd_D 16 EAEKRRLLRERRQKKFS 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555688888888773
No 184
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=20.51 E-value=2.8e+02 Score=24.13 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=69.4
Q ss_pred chHHHHHHHhc-----CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC---cHhHHHHHHHH
Q 009647 308 VLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE---HRVLKKEAAWV 379 (530)
Q Consensus 308 ~l~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~---~~~i~~~A~~~ 379 (530)
.+|.++.++.. -.+.......++.+..+.....-.....+ +.++|.++.++-.. ...+|..|+..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYl-------H~LipsvLtCll~k~l~~~~LRd~AA~l 113 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYL-------HQILPSLLTCVIGKSIVDDDVRKMSADI 113 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGH-------HHHHHHHHHHHHCTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHH-------HHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 55666655531 23556667778888888877766666665 46899988887432 22799999999
Q ss_pred HHHHhcCCHHHHHHHHhCCcHHHHHHHhcC--CChhHHHHHHHHHHHh
Q 009647 380 LSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNL 425 (530)
Q Consensus 380 Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~--~~~~v~~eA~~aL~nl 425 (530)
++.|+......-. -+...+...+.+.+.+ .+.....-|++.|..+
T Consensus 114 L~~I~~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 114 VKYIYDTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 9999863110000 0111244556666644 4556777788888877
Done!