BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009648
(530 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 113/259 (43%), Gaps = 26/259 (10%)
Query: 84 FVAGATGKVGSRTVRELLKLG---FRVRAGVRSVQRAENLVQSVKQMK---LDGELANKG 137
V GA+G+ G + V + LK G F + VRS Q E + D + N
Sbjct: 8 LVTGASGRTG-QIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPA 66
Query: 138 IQPVEMLELVECDLEK-RVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLV 196
Q ++ L ++ + K + +P G I G P ++D+ KN +
Sbjct: 67 FQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQY---------PEQVDWIGQKNQI 117
Query: 197 DAATIAKVNHFIMVSSLGTNKFGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGG 256
DAA +A V H ++V S+G P L +L+WKRKAE+ L SG PYTI+R GG
Sbjct: 118 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLG-NGNILVWKRKAEQYLADSGTPYTIIRAGG 176
Query: 257 MERPTDAYKE---THNITLSQED--TLFGGQVSNLQVAELLACMAKNRSLSYCKVVEVIA 311
+ +E + L Q D T+ V+ + + LL AKN++ E
Sbjct: 177 LLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPE--- 233
Query: 312 ETTAPLTPMEELLAKIPSQ 330
T+ P + L +++ S+
Sbjct: 234 GTSTPTKDFKALFSQVTSR 252
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 99/250 (39%), Gaps = 36/250 (14%)
Query: 80 DNLAF------VAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQMKLDGEL 133
+NL F V GA GKV + EL G A VR+ ++ EL
Sbjct: 15 ENLYFQGXRVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGP-------------EL 61
Query: 134 ANKGIQPVEMLELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATK 193
+G ++V +LE+ A + V+ G+ D T ID
Sbjct: 62 RERGAS-----DIVVANLEE--DFSHAFASIDAVVFAAGSGPHTGADKT--ILIDLWGAI 112
Query: 194 NLVDAATIAKVNHFIMVSSLGTNKFGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVR 253
+ A + FI VSS+GT P L+ KR A++ L S L YTIVR
Sbjct: 113 KTIQEAEKRGIKRFIXVSSVGTVD---PDQGPXNXRHYLVAKRLADDELKRSSLDYTIVR 169
Query: 254 PGGMERPTDAYKETHNITLSQEDTLFGGQVSNLQVAELLACMAKNRSLSYCKVVEVIAET 313
PG P + T +T+S + ++ VA+++A + ++ + K EV+
Sbjct: 170 PG----PLSNEESTGKVTVSPHFSEITRSITRHDVAKVIAELV-DQQHTIGKTFEVLNGD 224
Query: 314 TAPLTPMEEL 323
T +E+L
Sbjct: 225 TPIAKVVEQL 234
>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr121
Length = 219
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 84 FVAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQMKLDGELANKGIQPVEM 143
F+ G+TG+VG ++ L +++ AG R V++ +VK + D
Sbjct: 4 FIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFD------------- 49
Query: 144 LELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAATIAK 203
V+ E+ + L +I G+ K + ++D L AA A+
Sbjct: 50 ---VDWTPEEXAK---QLHGXDAIINVSGSGGKSLL------KVDLYGAVKLXQAAEKAE 97
Query: 204 VNHFIMVS---SLGTNKF---GFPA----AILNLFWGVLLWKRKAEEALIASGLPYTIVR 253
V FI++S SL K+ GF A I F + L K + L YTI++
Sbjct: 98 VKRFILLSTIFSLQPEKWIGAGFDALKDYYIAKHFADLYLTKE--------TNLDYTIIQ 149
Query: 254 PGGM 257
PG +
Sbjct: 150 PGAL 153
>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
Length = 215
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 162 GNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAATIAKVNHFIMVSSLGTNKFGFP 221
G+ CC+G + KE +DF + A H+++VS+LG +
Sbjct: 64 GSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGAD----- 118
Query: 222 AAILNLFWGVLLWKRKAEEALIASGLP-YTIVRPGGMERPTDAYK 265
A ++F+ + K + E+AL G P TI RP + P + ++
Sbjct: 119 -AKSSIFYNRV--KGELEQALQEQGWPQLTIARPSLLFGPREEFR 160
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 85 VAGATGKVGSRTVRELLKLGFRVRAGVR---SVQRAENLV 121
V GA+G +GS V LL+ G+ VRA VR +V++ ++L+
Sbjct: 10 VTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLL 49
>pdb|2BKA|A Chain A, Cc3(Tip30)crystal Strucure
Length = 242
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 24/137 (17%)
Query: 84 FVAGATGKVGSRTVRELLKLGFRVRA---GVRSVQRAENLVQSVKQMKLDGELANKGIQP 140
F+ GA+G+ G ++E+L+ G + G R + E ++V Q
Sbjct: 22 FILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQ-------------- 67
Query: 141 VEMLELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAAT 200
E+V D EK A V CC+G + + G R+D + A
Sbjct: 68 ----EVV--DFEKLDDYASAFQGHDVGFCCLGTTRGKA-GAEGFVRVDRDYVLKSAELAK 120
Query: 201 IAKVNHFIMVSSLGTNK 217
HF ++SS G +K
Sbjct: 121 AGGCKHFNLLSSKGADK 137
>pdb|3S55|A Chain A, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|B Chain B, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|C Chain C, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|D Chain D, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|E Chain E, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|F Chain F, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|G Chain G, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|H Chain H, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
Length = 281
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 94/242 (38%), Gaps = 58/242 (23%)
Query: 55 AQASGTINIC-----SEAVGATPTKADSKDDNLAFVAGATGKVGSRTVRELLKLGFRVRA 109
A+A I IC S+ VG AD + +A V K G R + K+ + RA
Sbjct: 31 AEAGADIAICDRCENSDVVGYPLATADDLAETVALVE----KTGRRCISA--KVDVKDRA 84
Query: 110 GVRS-VQRAENLVQSVKQMKLDGELANKGIQPVEMLELVECDLEKRVQIEPALGNASVVI 168
+ S V AE+ + + D + N GI + +L VE Q + +G
Sbjct: 85 ALESFVAEAEDTLGGI-----DIAITNAGISTIALLPEVE-----SAQWDEVIGT----- 129
Query: 169 CCIGASEKEVFDITGPYRIDFQATKNLVDAATIAKVNH--FIMVSSLGTNKFGFP-AAIL 225
++TG + ++ K N+ + VSS+ + F A+ +
Sbjct: 130 -----------NLTGTFNTIAAVAPGMI------KRNYGRIVTVSSMLGHSANFAQASYV 172
Query: 226 NLFWGVLLWKRKAEEALIASGLPYTIVRPGGMERPTDAYKETHNITLSQEDTLFGGQVSN 285
+ WGV+ + A L+ G+ V PG +E P THN D +FG +
Sbjct: 173 SSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPM-----THN------DFVFGTMRPD 221
Query: 286 LQ 287
L+
Sbjct: 222 LE 223
>pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
pdb|3TN7|B Chain B, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
Length = 257
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 69 GATPTKADSKDDNLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQ 126
G P + + +A + GA+ +G R L + G+ + G RSV R E + + Q
Sbjct: 13 GLVPRGSHMLEMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ 70
>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
(Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
2.30 A Resolution
Length = 248
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 24/137 (17%)
Query: 84 FVAGATGKVGSRTVRELLKLGFRVRA---GVRSVQRAENLVQSVKQMKLDGELANKGIQP 140
F+ GA+G+ G ++E+L + G R + E ++V Q
Sbjct: 28 FILGASGETGKVLLKEILGQNLFSKVTLIGRRKLTFEEEAYKNVNQ-------------- 73
Query: 141 VEMLELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAAT 200
E+V D EK A V CC+G + + G R+D + A
Sbjct: 74 ----EVV--DFEKLDVYASAFQGHDVGFCCLGTTRSKA-GAEGFVRVDRDYVLKSAELAK 126
Query: 201 IAKVNHFIMVSSLGTNK 217
HF ++SS G +K
Sbjct: 127 AGGCKHFNLLSSRGADK 143
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 236 RKAEEALIASGLPYTIVRPGGM 257
R+A +A+ ASGL YTI+RP +
Sbjct: 152 RRAADAIEASGLEYTILRPAWL 173
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 85 VAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAEN 119
V GATG+ GS V E + G V A VR Q+A +
Sbjct: 5 VLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD 39
>pdb|1XGK|A Chain A, Crystal Structure Of N12g And A18g Mutant Nmra
Length = 352
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 37/175 (21%)
Query: 85 VAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQMKLDGELANKGIQPVEML 144
V GATG+ G+ +R +G VRA V S L G +A + +Q + +
Sbjct: 10 VVGATGRQGASLIRVAAAVGHHVRAQVHS---------------LKGLIAEE-LQAIPNV 53
Query: 145 ELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAATIA-K 203
L + P L N ++ + + T + K+L DAA A
Sbjct: 54 TLFQG---------PLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGT 104
Query: 204 VNHFIMVSSLGTNKFG-FPAAILNLFWGVLLW--KRKAEEALIASGLPYTIVRPG 255
+ H+I S + +G +PA V +W K E + GLP T V G
Sbjct: 105 IQHYIYSSMPDHSLYGPWPA--------VPMWAPKFTVENYVRQLGLPSTFVYAG 151
>pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon
Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp
Length = 235
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 81 NLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQ 126
+A + GA+ +G R L + G+ + G RSV R E + + Q
Sbjct: 3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,629,273
Number of Sequences: 62578
Number of extensions: 509407
Number of successful extensions: 978
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 30
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)