Query 009649
Match_columns 530
No_of_seqs 237 out of 867
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 15:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 1.4E-12 3E-17 99.8 4.8 53 373-426 5-60 (60)
2 smart00353 HLH helix loop heli 99.3 1E-11 2.2E-16 93.7 6.2 49 377-426 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.2 9.2E-12 2E-16 95.5 4.9 49 374-422 3-55 (55)
4 KOG1318 Helix loop helix trans 99.2 4E-11 8.7E-16 125.9 7.2 87 371-458 232-328 (411)
5 KOG1319 bHLHZip transcription 99.0 2.2E-10 4.9E-15 110.4 2.5 65 375-439 65-135 (229)
6 KOG4304 Transcriptional repres 98.3 4.8E-07 1E-11 90.2 2.8 55 374-428 34-95 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.0 6.2E-06 1.3E-10 93.3 5.0 52 373-424 21-75 (803)
8 KOG2483 Upstream transcription 97.8 4.1E-05 8.9E-10 76.1 6.5 62 372-433 59-122 (232)
9 KOG2588 Predicted DNA-binding 97.7 3.4E-05 7.3E-10 88.3 5.0 65 371-435 275-339 (953)
10 KOG3960 Myogenic helix-loop-he 97.5 0.00018 4E-09 72.7 5.9 58 376-433 122-180 (284)
11 PLN03217 transcription factor 97.3 0.00038 8.2E-09 60.7 5.6 54 382-436 17-76 (93)
12 KOG0561 bHLH transcription fac 97.2 0.0003 6.5E-09 72.8 4.4 52 375-427 63-116 (373)
13 KOG4029 Transcription factor H 96.8 0.0012 2.6E-08 64.3 3.9 58 375-432 112-172 (228)
14 KOG3910 Helix loop helix trans 95.8 0.018 4E-07 63.2 6.4 55 375-429 529-586 (632)
15 KOG4447 Transcription factor T 88.1 0.28 6.1E-06 47.2 1.8 48 374-422 80-129 (173)
16 KOG3558 Hypoxia-inducible fact 78.3 1.3 2.9E-05 50.8 2.2 44 376-420 50-97 (768)
17 KOG3560 Aryl-hydrocarbon recep 77.1 1.9 4.2E-05 48.5 3.1 39 381-420 34-76 (712)
18 KOG3898 Transcription factor N 67.7 4.6 0.0001 41.0 3.0 47 376-423 76-125 (254)
19 KOG3559 Transcriptional regula 62.8 6 0.00013 43.6 2.9 44 378-422 7-54 (598)
20 KOG4395 Transcription factor A 58.1 11 0.00024 39.2 3.6 59 365-426 170-230 (285)
21 KOG3582 Mlx interactors and re 46.6 10 0.00022 44.1 1.5 61 373-433 652-716 (856)
22 COG3074 Uncharacterized protei 32.2 59 0.0013 28.3 3.5 28 411-438 13-40 (79)
23 KOG3582 Mlx interactors and re 29.8 18 0.00039 42.2 0.1 58 373-433 788-849 (856)
24 PF13334 DUF4094: Domain of un 29.6 90 0.0019 27.7 4.3 26 411-436 68-93 (95)
25 KOG4447 Transcription factor T 28.8 47 0.001 32.6 2.7 44 379-423 29-74 (173)
26 COG5180 PBP1 Protein interacti 26.4 1.7E+02 0.0037 33.3 6.7 119 406-528 485-614 (654)
27 PRK15422 septal ring assembly 22.8 1.1E+02 0.0023 27.0 3.5 29 410-438 12-40 (79)
28 PF06005 DUF904: Protein of un 21.2 1.3E+02 0.0028 25.6 3.6 26 411-436 13-38 (72)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.33 E-value=1.4e-12 Score=99.78 Aligned_cols=53 Identities=36% Similarity=0.634 Sum_probs=48.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHH
Q 009649 373 TNSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVE 426 (530)
Q Consensus 373 t~~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe 426 (530)
...|+..||+||++||+.|..|+++||.+ .++ +|++||+.||+||+.|+.+++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~-~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKL-SKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999998 554 999999999999999999863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.26 E-value=1e-11 Score=93.74 Aligned_cols=49 Identities=39% Similarity=0.576 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHH
Q 009649 377 SLAERVRREKISERMKFLQDLVPG---CSKVTGKAVMLDEIINYVQSLQRQVE 426 (530)
Q Consensus 377 slaERrRRerINer~r~Lq~LVP~---~~K~~DKASILdeAIdYIK~LQ~QVe 426 (530)
+..||+||++||+.|..|+.+||. ..+. +|++||++||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999996 4465 899999999999999999986
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.24 E-value=9.2e-12 Score=95.53 Aligned_cols=49 Identities=37% Similarity=0.699 Sum_probs=44.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHH
Q 009649 374 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 422 (530)
Q Consensus 374 ~~HslaERrRRerINer~r~Lq~LVP~~----~K~~DKASILdeAIdYIK~LQ 422 (530)
..|+..||+||++||+.|..|+.|||.+ ....+|++||+.||+||+.||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 3699999999999999999999999987 233599999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.17 E-value=4e-11 Score=125.89 Aligned_cols=87 Identities=31% Similarity=0.489 Sum_probs=65.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhcCCCCC----CCCCchhhHHHHHHHHHHHHHHHHHH------HhhhhhcCCCcc
Q 009649 371 QATNSHSLAERVRREKISERMKFLQDLVPGCS----KVTGKAVMLDEIINYVQSLQRQVEFL------SMKLATVNPRLD 440 (530)
Q Consensus 371 qAt~~HslaERrRRerINer~r~Lq~LVP~~~----K~~DKASILdeAIdYIK~LQ~QVe~L------e~kla~vnp~l~ 440 (530)
++++.|+++|||||++||++|++|..|||.|+ +. +|.+||..+++||+.||+..+.. +.++++.+.+|-
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~-nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~ 310 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKS-NKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELA 310 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHH
Confidence 34468999999999999999999999999994 43 79999999999999999766533 234455555565
Q ss_pred chhhhhhhHHhhhcCCCC
Q 009649 441 FNIEELLAKDVLQSRAGP 458 (530)
Q Consensus 441 ~~ie~ll~~d~~q~~~~~ 458 (530)
..|+.|......+.....
T Consensus 311 ~rieeLk~~~~~~~~~~~ 328 (411)
T KOG1318|consen 311 LRIEELKSEAGRHGLQVE 328 (411)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 566666555555444443
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.97 E-value=2.2e-10 Score=110.45 Aligned_cols=65 Identities=31% Similarity=0.518 Sum_probs=58.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCCCCC------CCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCc
Q 009649 375 SHSLAERVRREKISERMKFLQDLVPGCSKV------TGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRL 439 (530)
Q Consensus 375 ~HslaERrRRerINer~r~Lq~LVP~~~K~------~DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp~l 439 (530)
.|..+||+||+.|+..+..||+|||.|... +.||.||.++|+||.+|..++...+.++++|+.++
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v 135 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV 135 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999987432 26999999999999999999999999999988774
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.25 E-value=4.8e-07 Score=90.24 Aligned_cols=55 Identities=31% Similarity=0.410 Sum_probs=47.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCCCCC-------CCchhhHHHHHHHHHHHHHHHHHH
Q 009649 374 NSHSLAERVRREKISERMKFLQDLVPGCSKV-------TGKAVMLDEIINYVQSLQRQVEFL 428 (530)
Q Consensus 374 ~~HslaERrRRerINer~r~Lq~LVP~~~K~-------~DKASILdeAIdYIK~LQ~QVe~L 428 (530)
..|-+.|||||.|||+-+.+|++|||.+.++ .+||.||+-|++|++.||.+...-
T Consensus 34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~ 95 (250)
T KOG4304|consen 34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAA 95 (250)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence 3589999999999999999999999965332 279999999999999999765443
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.98 E-value=6.2e-06 Score=93.32 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=47.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCchhhHHHHHHHHHHHHHH
Q 009649 373 TNSHSLAERVRREKISERMKFLQDLVPGCS---KVTGKAVMLDEIINYVQSLQRQ 424 (530)
Q Consensus 373 t~~HslaERrRRerINer~r~Lq~LVP~~~---K~~DKASILdeAIdYIK~LQ~Q 424 (530)
+..|+.+|||||+++|..|.+|.+|||.|. .+.||-+||.+||..||.++++
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 467999999999999999999999999996 3349999999999999999885
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.79 E-value=4.1e-05 Score=76.14 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=50.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCC--CchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009649 372 ATNSHSLAERVRREKISERMKFLQDLVPGCSKVT--GKAVMLDEIINYVQSLQRQVEFLSMKLA 433 (530)
Q Consensus 372 At~~HslaERrRRerINer~r~Lq~LVP~~~K~~--DKASILdeAIdYIK~LQ~QVe~Le~kla 433 (530)
++..|+.-||+||..|.+.|..|+++||....-+ ..++||+.|++||+.|+.+....+..++
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e 122 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIE 122 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 3457999999999999999999999999654322 2589999999999999976655554433
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.71 E-value=3.4e-05 Score=88.27 Aligned_cols=65 Identities=28% Similarity=0.487 Sum_probs=54.7
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009649 371 QATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 435 (530)
Q Consensus 371 qAt~~HslaERrRRerINer~r~Lq~LVP~~~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~v 435 (530)
..+.+|+++|||-|-.||++|.+|++|||+..-+..|..+|..||+||++||..-+.+....+.+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l 339 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL 339 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence 44677999999999999999999999999875444899999999999999998776665544433
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.47 E-value=0.00018 Score=72.67 Aligned_cols=58 Identities=21% Similarity=0.254 Sum_probs=49.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009649 376 HSLAERVRREKISERMKFLQD-LVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLA 433 (530)
Q Consensus 376 HslaERrRRerINer~r~Lq~-LVP~~~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla 433 (530)
-.+.||||=.|+||.|.+|++ -+++-+...-|..||..||+||..||.-++++.....
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 468999999999999999965 5677776668999999999999999998888775433
No 11
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.35 E-value=0.00038 Score=60.70 Aligned_cols=54 Identities=31% Similarity=0.524 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhcCCCC------CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 009649 382 VRREKISERMKFLQDLVPGC------SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN 436 (530)
Q Consensus 382 rRRerINer~r~Lq~LVP~~------~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vn 436 (530)
---+.|+|-+..||.|+|.. .|+ .-+-+|+|+.+||+.|+++|..|++.+..+-
T Consensus 17 isddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 17 ISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred CCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999954 333 5677899999999999999999999987654
No 12
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.23 E-value=0.0003 Score=72.77 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=45.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCC--CCCCCCchhhHHHHHHHHHHHHHHHHH
Q 009649 375 SHSLAERVRREKISERMKFLQDLVPG--CSKVTGKAVMLDEIINYVQSLQRQVEF 427 (530)
Q Consensus 375 ~HslaERrRRerINer~r~Lq~LVP~--~~K~~DKASILdeAIdYIK~LQ~QVe~ 427 (530)
.-+..||||=.-||..|..|+.|+|. ..|+ .||.||+.+.+||..|+.+.-+
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~Kt~ 116 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHKTE 116 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcccc
Confidence 45778999999999999999999996 4676 8999999999999999865433
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.79 E-value=0.0012 Score=64.34 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=49.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009649 375 SHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKL 432 (530)
Q Consensus 375 ~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe~Le~kl 432 (530)
.++..||.|=+-+|..|..||.+||.- +|+..|..+|..||.||++|+.-++.-+...
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 367779999999999999999999942 4445999999999999999998887766544
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.77 E-value=0.018 Score=63.15 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 009649 375 SHSLAERVRREKISERMKFLQDLVPG---CSKVTGKAVMLDEIINYVQSLQRQVEFLS 429 (530)
Q Consensus 375 ~HslaERrRRerINer~r~Lq~LVP~---~~K~~DKASILdeAIdYIK~LQ~QVe~Le 429 (530)
..+..||.|=..|||.||+|.++.=- ..|.--|.-||..||.-|-.|++||++-.
T Consensus 529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 48999999999999999999998752 23322488999999999999999998743
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=88.09 E-value=0.28 Score=47.24 Aligned_cols=48 Identities=23% Similarity=0.357 Sum_probs=41.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHH
Q 009649 374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQ 422 (530)
Q Consensus 374 ~~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ 422 (530)
--|++.||+|-..+|+.|..||.++|.. +|+ .|.-.|.-|-.||-+|=
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhh
Confidence 4699999999999999999999999964 665 78788888888888874
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=78.26 E-value=1.3 Score=50.80 Aligned_cols=44 Identities=32% Similarity=0.360 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHH
Q 009649 376 HSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQS 420 (530)
Q Consensus 376 HslaERrRRerINer~r~Lq~LVP~~----~K~~DKASILdeAIdYIK~ 420 (530)
-.-|.|.||.|=|+-|.+|..+||-- ..+ |||+|+.-||-|++-
T Consensus 50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshL-DkaSimRLtISyLRl 97 (768)
T KOG3558|consen 50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHL-DKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhcccchHHHHHHHHhCCCcchhhhhh-hhHHHHHHHHHHHHH
Confidence 34478999999999999999999933 344 999999999999873
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=77.14 E-value=1.9 Score=48.53 Aligned_cols=39 Identities=23% Similarity=0.456 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhcCCC----CCCCCCchhhHHHHHHHHHH
Q 009649 381 RVRREKISERMKFLQDLVPG----CSKVTGKAVMLDEIINYVQS 420 (530)
Q Consensus 381 RrRRerINer~r~Lq~LVP~----~~K~~DKASILdeAIdYIK~ 420 (530)
+|-|+|+|--+..|..|+|= .+|+ ||.+||.-++-|++-
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLRV 76 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHHH
Confidence 56799999999999999993 4787 999999999999864
No 18
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=67.68 E-value=4.6 Score=40.99 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCchhhHHHHHHHHHHHHH
Q 009649 376 HSLAERVRREKISERMKFLQDLVPG---CSKVTGKAVMLDEIINYVQSLQR 423 (530)
Q Consensus 376 HslaERrRRerINer~r~Lq~LVP~---~~K~~DKASILdeAIdYIK~LQ~ 423 (530)
-+..||+|=-.+|+-|+.|++++|. ..|+ .|.-.|.-|-+||..|++
T Consensus 76 aNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 76 ANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE 125 (254)
T ss_pred ccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence 4778999999999999999999993 4566 688999999999998874
No 19
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=62.75 E-value=6 Score=43.57 Aligned_cols=44 Identities=30% Similarity=0.349 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHH
Q 009649 378 LAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 422 (530)
Q Consensus 378 laERrRRerINer~r~Lq~LVP~~----~K~~DKASILdeAIdYIK~LQ 422 (530)
-+.|.||++=|-.|.+|..|+|-. ..+ ||++|+.-|.-|||--+
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQl-DKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQL-DKASIIRLTTSYLKMRN 54 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhcc-chhhhhhHHHHHHHHHH
Confidence 356899999999999999999954 344 99999999999998543
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=58.07 E-value=11 Score=39.23 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=45.5
Q ss_pred hhhccccccccccHHHHHHHHHHHHHHHHHhhcCCCCC--CCCCchhhHHHHHHHHHHHHHHHH
Q 009649 365 VRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCS--KVTGKAVMLDEIINYVQSLQRQVE 426 (530)
Q Consensus 365 ~RaRR~qAt~~HslaERrRRerINer~r~Lq~LVP~~~--K~~DKASILdeAIdYIK~LQ~QVe 426 (530)
+.++|+.+ -+..||+|=..+|..|..|+..||..+ +...|-..|..|-.||-.|-..+.
T Consensus 170 v~~~rr~a---anarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 170 VNSHRRLA---ANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred HHHhhhcc---cchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 34444444 678999999999999999999999653 223688889999999988766553
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=46.58 E-value=10 Score=44.06 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=48.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhcCCCCCCCC----CchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009649 373 TNSHSLAERVRREKISERMKFLQDLVPGCSKVT----GKAVMLDEIINYVQSLQRQVEFLSMKLA 433 (530)
Q Consensus 373 t~~HslaERrRRerINer~r~Lq~LVP~~~K~~----DKASILdeAIdYIK~LQ~QVe~Le~kla 433 (530)
...|+-+|.+||+.|.-.+..|-.++-+..++. -++.-+..++.||.-+|.+...+.++-.
T Consensus 652 ~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~ 716 (856)
T KOG3582|consen 652 PITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAH 716 (856)
T ss_pred cccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhh
Confidence 357999999999999999999999998665432 4566699999999999887766655433
No 22
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.19 E-value=59 Score=28.29 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 009649 411 LDEIINYVQSLQRQVEFLSMKLATVNPR 438 (530)
Q Consensus 411 LdeAIdYIK~LQ~QVe~Le~kla~vnp~ 438 (530)
+..||+-|.-||.+|++|.++...+.-+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e 40 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 5779999999999999999988765443
No 23
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=29.79 E-value=18 Score=42.18 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=48.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009649 373 TNSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLA 433 (530)
Q Consensus 373 t~~HslaERrRRerINer~r~Lq~LVP~~----~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla 433 (530)
...|+-+|||||-.+-+++..|-+|.|.. .+++.+++||. +-|+.+|+.-+.+.++..
T Consensus 788 ~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~ 849 (856)
T KOG3582|consen 788 SAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIE 849 (856)
T ss_pred ecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhh
Confidence 45788999999999999999999999954 55668999998 888999888877776543
No 24
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=29.61 E-value=90 Score=27.72 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC
Q 009649 411 LDEIINYVQSLQRQVEFLSMKLATVN 436 (530)
Q Consensus 411 LdeAIdYIK~LQ~QVe~Le~kla~vn 436 (530)
+.++-+=|+.|.+.|-.|||++++..
T Consensus 68 V~kTh~aIq~LdKtIS~LEMELAaAR 93 (95)
T PF13334_consen 68 VSKTHEAIQSLDKTISSLEMELAAAR 93 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777888999999999999998754
No 25
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=28.79 E-value=47 Score=32.55 Aligned_cols=44 Identities=27% Similarity=0.343 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC--CCCCchhhHHHHHHHHHHHHH
Q 009649 379 AERVRREKISERMKFLQDLVPGCS--KVTGKAVMLDEIINYVQSLQR 423 (530)
Q Consensus 379 aERrRRerINer~r~Lq~LVP~~~--K~~DKASILdeAIdYIK~LQ~ 423 (530)
.||.|..++|+.+..|+.|+|+.. ++ .+---|.-+-+||++|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk-~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGK-RGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCccc-ccccccccCCCchhhHHH
Confidence 578899999999999999999763 22 122225556666666543
No 26
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=26.36 E-value=1.7e+02 Score=33.35 Aligned_cols=119 Identities=21% Similarity=0.273 Sum_probs=53.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhhhhh-HHhhhcCCCCCCCc-CCCCCCCCCCCCCCCCCCCcc
Q 009649 406 GKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLA-KDVLQSRAGPSSTL-GFSPDMPLVYPPVHQSQAGLM 483 (530)
Q Consensus 406 DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp~l~~~ie~ll~-~d~~q~~~~~~s~~-gf~~~~~~~~p~~~~~q~~~~ 483 (530)
|+.+-+.+|-.. +-|+|+.-+-......+|-+..+|-.++- +-.+.+ ..|.+.| +|+-+..-.|-|+ |+|+.++
T Consensus 485 D~~~a~~~a~~~--~QQ~~~NS~GNa~~~~~~A~~~~M~~~m~~P~~~PS-A~P~P~M~~~~~G~~~~Y~P~-~PQ~~~~ 560 (654)
T COG5180 485 DEDTAIQEAQTR--FQQRQLNSMGNAVPGMNPAMGMNMGGMMGFPMGGPS-ASPNPMMNGFAAGSMGMYMPF-QPQPMFY 560 (654)
T ss_pred CCCccCchHHHH--HHHHHHhhccccccccChhhcCCccceeeccCCCCC-CCCCCCcCCcccCCcccccCC-CCCcccc
Confidence 455666666655 33455555444455667777666544211 101111 1122222 2433322234443 3467766
Q ss_pred ccC---CCCCCC-chhhhhcccCCCCCC--CC---CCCCCCCCCCCCccceecc
Q 009649 484 HGA---LPGMGN-PSDILRRTINSQLTP--MT---GGFKEPSQPMSGKMSYTML 528 (530)
Q Consensus 484 ~~~---lpg~~~-~~~~lr~~~~~ql~p--m~---g~~~~~~q~p~~~~~~~~~ 528 (530)
+.. +|-|.. -..+...++.+.+++ |- |.-..+.-+|-|-|-|+|.
T Consensus 561 ~PSP~~~P~~Gs~Ga~~~G~~~~~~vP~~~M~~~PG~~~GA~~~PGGi~~~~M~ 614 (654)
T COG5180 561 HPSPQMMPVMGSNGAEEGGGNISPHVPAGFMAAGPGAPMGAFGYPGGIPFQGMM 614 (654)
T ss_pred cCCCCCCcccCCCCCcccCCcCCCCCCccccccCCCCCCccccCCCcccccccc
Confidence 644 222221 112233334433332 11 2122223588888999985
No 27
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.83 E-value=1.1e+02 Score=27.01 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 009649 410 MLDEIINYVQSLQRQVEFLSMKLATVNPR 438 (530)
Q Consensus 410 ILdeAIdYIK~LQ~QVe~Le~kla~vnp~ 438 (530)
-+..||+-|.-||.+|++|.++...+...
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999987776554
No 28
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.19 E-value=1.3e+02 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC
Q 009649 411 LDEIINYVQSLQRQVEFLSMKLATVN 436 (530)
Q Consensus 411 LdeAIdYIK~LQ~QVe~Le~kla~vn 436 (530)
+..||+-|..||.+++.|..+...+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 57899999999999999998765543
Done!