Query 009649
Match_columns 530
No_of_seqs 237 out of 867
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 1E-16 3.6E-21 141.0 7.1 88 360-447 15-111 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 1.9E-16 6.5E-21 131.2 4.9 66 372-437 6-71 (82)
3 1a0a_A BHLH, protein (phosphat 99.5 2.8E-15 9.7E-20 119.4 1.6 54 373-426 3-62 (63)
4 1an4_A Protein (upstream stimu 99.5 7.1E-15 2.4E-19 116.1 3.3 54 372-426 5-64 (65)
5 4h10_B Circadian locomoter out 99.5 2.4E-14 8.2E-19 117.2 4.4 57 372-429 8-65 (71)
6 4h10_A ARYL hydrocarbon recept 99.5 9.6E-15 3.3E-19 119.7 1.3 54 369-423 6-63 (73)
7 1hlo_A Protein (transcription 99.4 7.6E-14 2.6E-18 114.6 5.9 61 374-435 14-76 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 1.1E-13 3.6E-18 114.1 6.1 63 374-437 4-68 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 3.3E-13 1.1E-17 113.4 6.1 60 374-434 8-70 (88)
10 3u5v_A Protein MAX, transcript 99.3 7.7E-13 2.6E-17 109.1 3.8 57 374-430 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 1.5E-11 5E-16 102.1 7.1 62 374-436 3-67 (80)
12 4f3l_A Mclock, circadian locom 98.9 1.2E-09 4E-14 108.2 5.7 55 370-425 10-65 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 1.5E-09 5.3E-14 87.9 4.6 51 375-426 15-67 (68)
14 2ql2_B Neurod1, neurogenic dif 98.8 3E-09 1E-13 84.2 5.3 52 375-426 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 2.4E-09 8.2E-14 107.5 3.7 55 369-424 10-68 (387)
16 4ath_A MITF, microphthalmia-as 98.7 1.8E-08 6.2E-13 85.0 5.0 66 384-450 4-79 (83)
17 2lfh_A DNA-binding protein inh 98.3 2.7E-07 9.3E-12 75.4 2.1 46 377-423 19-67 (68)
18 4aya_A DNA-binding protein inh 97.6 7.2E-05 2.5E-09 64.8 6.3 48 380-427 33-82 (97)
19 3coq_A Regulatory protein GAL4 42.8 18 0.00063 28.5 3.2 28 415-442 44-71 (89)
20 2wt7_A Proto-oncogene protein 41.3 55 0.0019 25.5 5.7 45 380-438 1-45 (63)
21 1zme_C Proline utilization tra 35.8 13 0.00046 28.1 1.4 22 416-437 44-65 (70)
22 2er8_A Regulatory protein Leu3 35.5 24 0.00083 26.9 2.8 22 415-436 48-69 (72)
23 2wuj_A Septum site-determining 32.6 42 0.0014 25.9 3.7 30 409-438 27-56 (57)
24 1hwt_C Protein (heme activator 28.2 29 0.001 26.9 2.2 22 415-436 57-78 (81)
25 2jee_A YIIU; FTSZ, septum, coi 28.1 49 0.0017 27.8 3.6 27 411-437 15-41 (81)
26 3muj_A Transcription factor CO 26.0 68 0.0023 29.4 4.4 35 386-421 95-133 (138)
27 1dh3_A Transcription factor CR 26.0 44 0.0015 25.7 2.8 23 416-438 22-44 (55)
28 1pyi_A Protein (pyrimidine pat 25.8 55 0.0019 26.1 3.5 24 415-438 47-70 (96)
29 1p3q_Q VPS9P, vacuolar protein 25.5 74 0.0025 24.8 4.0 26 378-403 3-28 (54)
30 2oqq_A Transcription factor HY 21.6 24 0.0008 26.7 0.4 25 416-440 3-27 (42)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.65 E-value=1e-16 Score=141.04 Aligned_cols=88 Identities=30% Similarity=0.412 Sum_probs=50.9
Q ss_pred ccchhhhhccccccccccHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHhh-----
Q 009649 360 EEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFLSMK----- 431 (530)
Q Consensus 360 ~~yi~~RaRR~qAt~~HslaERrRRerINer~r~Lq~LVP~~~K---~~DKASILdeAIdYIK~LQ~QVe~Le~k----- 431 (530)
++....++++++++..|+++||+||++||++|.+|++|||+|.+ ..+|++||++||+||++||.+++.|+..
T Consensus 15 ~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~ 94 (118)
T 4ati_A 15 ESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQK 94 (118)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred cchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888999999999999999999999999999853 2389999999999999999999999854
Q ss_pred -hhhcCCCccchhhhhh
Q 009649 432 -LATVNPRLDFNIEELL 447 (530)
Q Consensus 432 -la~vnp~l~~~ie~ll 447 (530)
+...|..|...|+.|.
T Consensus 95 ~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 95 KLEHANRHLLLRVQELE 111 (118)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3445555655555543
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.62 E-value=1.9e-16 Score=131.21 Aligned_cols=66 Identities=24% Similarity=0.368 Sum_probs=59.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 009649 372 ATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP 437 (530)
Q Consensus 372 At~~HslaERrRRerINer~r~Lq~LVP~~~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp 437 (530)
....|+++||+||++||++|.+|++|||++....+||+||++||+||++||.+++.|+.+...+..
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999998444599999999999999999999999998877644
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.50 E-value=2.8e-15 Score=119.39 Aligned_cols=54 Identities=28% Similarity=0.442 Sum_probs=47.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhcCCCCCC------CCCchhhHHHHHHHHHHHHHHHH
Q 009649 373 TNSHSLAERVRREKISERMKFLQDLVPGCSK------VTGKAVMLDEIINYVQSLQRQVE 426 (530)
Q Consensus 373 t~~HslaERrRRerINer~r~Lq~LVP~~~K------~~DKASILdeAIdYIK~LQ~QVe 426 (530)
...|+++||+||++||+.|.+|+.|||.+.+ ..+||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999999999999997633 23699999999999999998864
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=7.1e-15 Score=116.11 Aligned_cols=54 Identities=28% Similarity=0.452 Sum_probs=49.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhcCCCCC------CCCCchhhHHHHHHHHHHHHHHHH
Q 009649 372 ATNSHSLAERVRREKISERMKFLQDLVPGCS------KVTGKAVMLDEIINYVQSLQRQVE 426 (530)
Q Consensus 372 At~~HslaERrRRerINer~r~Lq~LVP~~~------K~~DKASILdeAIdYIK~LQ~QVe 426 (530)
....|+++||+||++||+.|.+|++|||.|. |+ +|++||++||+||+.||.+.+
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~-~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQ-SKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCC-CTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999986 44 999999999999999998753
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=2.4e-14 Score=117.19 Aligned_cols=57 Identities=23% Similarity=0.440 Sum_probs=51.4
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHH
Q 009649 372 ATNSHSLAERVRREKISERMKFLQDLVPGCS-KVTGKAVMLDEIINYVQSLQRQVEFLS 429 (530)
Q Consensus 372 At~~HslaERrRRerINer~r~Lq~LVP~~~-K~~DKASILdeAIdYIK~LQ~QVe~Le 429 (530)
...+|+++||+||++||++|.+|+.|||.+. |+ ||++||+.||+||+.||.++.-|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~-dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCC-CHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3457999999999999999999999999865 65 999999999999999999987664
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=9.6e-15 Score=119.73 Aligned_cols=54 Identities=30% Similarity=0.471 Sum_probs=48.3
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHHH
Q 009649 369 RGQATNSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQR 423 (530)
Q Consensus 369 R~qAt~~HslaERrRRerINer~r~Lq~LVP~~----~K~~DKASILdeAIdYIK~LQ~ 423 (530)
+.+++..|+++||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.||.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 344556899999999999999999999999988 576 999999999999999973
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=7.6e-14 Score=114.55 Aligned_cols=61 Identities=28% Similarity=0.476 Sum_probs=56.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009649 374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 435 (530)
Q Consensus 374 ~~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~v 435 (530)
..|+.+||+||.+||+.|..|++|||.+ .|+ +|++||..||+||+.||.+++.|+.++..+
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999987 465 999999999999999999999999988765
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.43 E-value=1.1e-13 Score=114.06 Aligned_cols=63 Identities=27% Similarity=0.461 Sum_probs=56.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 009649 374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP 437 (530)
Q Consensus 374 ~~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp 437 (530)
..|+.+||+||++||+.|..|+++||.+ .|. +|++||..||+||+.||.+++.|+.++..+..
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999985 665 99999999999999999999999888776543
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.38 E-value=3.3e-13 Score=113.45 Aligned_cols=60 Identities=27% Similarity=0.390 Sum_probs=53.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009649 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAT 434 (530)
Q Consensus 374 ~~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~ 434 (530)
..|+..||+||+.||++|..|+++||.+ .|. +|++||.+||+||++||.+.+.|..+...
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999976 465 99999999999999999999888766544
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.31 E-value=7.7e-13 Score=109.09 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=49.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 009649 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSM 430 (530)
Q Consensus 374 ~~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe~Le~ 430 (530)
..|+..||+||+.||+.|.+|+++||.+ .|...|+.||..||+||++||++|++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3699999999999999999999999953 44336889999999999999999998754
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.22 E-value=1.5e-11 Score=102.09 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=55.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 009649 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN 436 (530)
Q Consensus 374 ~~HslaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vn 436 (530)
..|+..||+||..||+.|..|+++||.+ .|. +|+.||..||+||+.||.+.+.|..+...+.
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999965 455 7999999999999999999999988766543
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=1.2e-09 Score=108.21 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=42.1
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCchhhHHHHHHHHHHHHHHH
Q 009649 370 GQATNSHSLAERVRREKISERMKFLQDLVP-GCSKVTGKAVMLDEIINYVQSLQRQV 425 (530)
Q Consensus 370 ~qAt~~HslaERrRRerINer~r~Lq~LVP-~~~K~~DKASILdeAIdYIK~LQ~QV 425 (530)
......|+++||+||++||+.|.+|+.||| ...|+ ||++||..||+|||.|+..-
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhhc
Confidence 334557999999999999999999999999 45576 99999999999999998653
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.86 E-value=1.5e-09 Score=87.87 Aligned_cols=51 Identities=24% Similarity=0.398 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 009649 375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVE 426 (530)
Q Consensus 375 ~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe 426 (530)
.|+..||+|+..||+.|..|+++||.. .|+ +|+.||..||+||++||..++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence 599999999999999999999999964 455 899999999999999998753
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.83 E-value=3e-09 Score=84.15 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 009649 375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVE 426 (530)
Q Consensus 375 ~HslaERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe 426 (530)
.|+..||+|+..||+.|..|+++||.. +++.+|..+|..||+||+.||..++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999965 2334899999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.77 E-value=2.4e-09 Score=107.50 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=48.1
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhhcCC----CCCCCCCchhhHHHHHHHHHHHHHH
Q 009649 369 RGQATNSHSLAERVRREKISERMKFLQDLVP----GCSKVTGKAVMLDEIINYVQSLQRQ 424 (530)
Q Consensus 369 R~qAt~~HslaERrRRerINer~r~Lq~LVP----~~~K~~DKASILdeAIdYIK~LQ~Q 424 (530)
.++++.+|+.+||+||++||+.|.+|+.||| ...|+ ||++||..||+|||.|+..
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 3445668999999999999999999999999 45676 9999999999999999843
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.66 E-value=1.8e-08 Score=84.97 Aligned_cols=66 Identities=29% Similarity=0.453 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhcCCCCC----CCCCchhhHHHHHHHHHHHHHHHHHHHh------hhhhcCCCccchhhhhhhHH
Q 009649 384 REKISERMKFLQDLVPGCS----KVTGKAVMLDEIINYVQSLQRQVEFLSM------KLATVNPRLDFNIEELLAKD 450 (530)
Q Consensus 384 RerINer~r~Lq~LVP~~~----K~~DKASILdeAIdYIK~LQ~QVe~Le~------kla~vnp~l~~~ie~ll~~d 450 (530)
|..||++|++|..|||.+. |. +|++||..||+||+.||.+++.+.+ +++..|.+|.+.|.+|....
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~-nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRW-NKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCC-SHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 8899999999999999864 44 8999999999999999987776653 34556667777777665444
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.25 E-value=2.7e-07 Score=75.35 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHH
Q 009649 377 SLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQR 423 (530)
Q Consensus 377 slaERrRRerINer~r~Lq~LVP~~---~K~~DKASILdeAIdYIK~LQ~ 423 (530)
+-.||+|+..||+.|..||++||.. .|+ +|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence 3457889999999999999999965 455 899999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.65 E-value=7.2e-05 Score=64.76 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHH
Q 009649 380 ERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEF 427 (530)
Q Consensus 380 ERrRRerINer~r~Lq~LVP~~--~K~~DKASILdeAIdYIK~LQ~QVe~ 427 (530)
||.|=..||+.|..||.+||.. +++..|..+|..||+||+.||..++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4778888999999999999964 33348999999999999999988764
No 19
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=42.78 E-value=18 Score=28.46 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCccch
Q 009649 415 INYVQSLQRQVEFLSMKLATVNPRLDFN 442 (530)
Q Consensus 415 IdYIK~LQ~QVe~Le~kla~vnp~l~~~ 442 (530)
..||..|+.+|+.|+..+..+.+..+++
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~~l~ 71 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPREDLD 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhH
Confidence 4699999999999999999998876654
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.29 E-value=55 Score=25.46 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 009649 380 ERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPR 438 (530)
Q Consensus 380 ERrRRerINer~r~Lq~LVP~~~K~~DKASILdeAIdYIK~LQ~QVe~Le~kla~vnp~ 438 (530)
||++|.+...++-+.+. . ..-.+|+..|+.+|+.|+.+...+..+
T Consensus 1 Ekr~rrrerNR~AA~rc-----R---------~rKk~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----R---------NRRRELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555543 1 224567777777777777766655444
No 21
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=35.84 E-value=13 Score=28.13 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcCC
Q 009649 416 NYVQSLQRQVEFLSMKLATVNP 437 (530)
Q Consensus 416 dYIK~LQ~QVe~Le~kla~vnp 437 (530)
.||..|+.+|+.|+..+..+..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888877766543
No 22
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=35.49 E-value=24 Score=26.95 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcC
Q 009649 415 INYVQSLQRQVEFLSMKLATVN 436 (530)
Q Consensus 415 IdYIK~LQ~QVe~Le~kla~vn 436 (530)
-.||..|+.+|+.|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999888754
No 23
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.64 E-value=42 Score=25.86 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 009649 409 VMLDEIINYVQSLQRQVEFLSMKLATVNPR 438 (530)
Q Consensus 409 SILdeAIdYIK~LQ~QVe~Le~kla~vnp~ 438 (530)
..|++.++-+..|..+++.|+.++..++.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 569999999999999999999999887654
No 24
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.21 E-value=29 Score=26.93 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcC
Q 009649 415 INYVQSLQRQVEFLSMKLATVN 436 (530)
Q Consensus 415 IdYIK~LQ~QVe~Le~kla~vn 436 (530)
-.||..|+.+|+.||..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999998877654
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.11 E-value=49 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 009649 411 LDEIINYVQSLQRQVEFLSMKLATVNP 437 (530)
Q Consensus 411 LdeAIdYIK~LQ~QVe~Le~kla~vnp 437 (530)
++.||+-|.-||.+|++|.++..+++.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998877544
No 26
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=26.04 E-value=68 Score=29.38 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHH
Q 009649 386 KISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSL 421 (530)
Q Consensus 386 rINer~r~Lq~LVP~~----~K~~DKASILdeAIdYIK~L 421 (530)
.|.-.|..|+.+||.- .++ -|-.||..|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~l-pk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERL-PKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhh-hHHHHHHHHHHHHHHH
Confidence 3788899999999843 344 7999999999998876
No 27
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.97 E-value=44 Score=25.65 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCC
Q 009649 416 NYVQSLQRQVEFLSMKLATVNPR 438 (530)
Q Consensus 416 dYIK~LQ~QVe~Le~kla~vnp~ 438 (530)
.||..|+.+|..|+.+...+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888988888888877665443
No 28
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.83 E-value=55 Score=26.13 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCC
Q 009649 415 INYVQSLQRQVEFLSMKLATVNPR 438 (530)
Q Consensus 415 IdYIK~LQ~QVe~Le~kla~vnp~ 438 (530)
..||+.|+.+|+.|+..+..+...
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~~ 70 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGVD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 459999999999999988876554
No 29
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=25.49 E-value=74 Score=24.85 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCC
Q 009649 378 LAERVRREKISERMKFLQDLVPGCSK 403 (530)
Q Consensus 378 laERrRRerINer~r~Lq~LVP~~~K 403 (530)
+++|-+|..-++-++.|+.+.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57888999999999999999999876
No 30
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.57 E-value=24 Score=26.65 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCcc
Q 009649 416 NYVQSLQRQVEFLSMKLATVNPRLD 440 (530)
Q Consensus 416 dYIK~LQ~QVe~Le~kla~vnp~l~ 440 (530)
-|+-.|+.+++.|+.+.+.++.++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888899999999888888777764
Done!