RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009651
(530 letters)
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 795 bits (2057), Expect = 0.0
Identities = 239/516 (46%), Positives = 329/516 (63%), Gaps = 10/516 (1%)
Query: 17 KIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETY 76
+I + + N + H+ ++ P +FA A +VRD L+ +W T
Sbjct: 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60
Query: 77 HHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAAL 136
H+ + DPK+ YYLS+EF GRTL N + +L ++NA +A LG +EE+ E E+DA L
Sbjct: 61 QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120
Query: 137 GNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEV 196
GNGGLGRLA+CFLDSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180
Query: 197 VRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASA 256
R + PV F+G V G + WV +VV A+ YD P+PGY+ ++RLW AKA
Sbjct: 181 ARPEFTLPVHFYGRVEHTSQGAK-WVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP- 238
Query: 257 EDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMIL 316
DFNL FN G Y A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I
Sbjct: 239 NDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIR 298
Query: 317 RFKERK------SGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITT 370
RFK K + FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T
Sbjct: 299 RFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTV 358
Query: 371 RTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMC 430
+T AYTNHTVLPEALE+W ++ LLPRH++II EI++RF+ V + ++ M
Sbjct: 359 KTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMS 418
Query: 431 ILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITP 490
+++ K + MA+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITP
Sbjct: 419 LVEEGAVK-RINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITP 477
Query: 491 RRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQ 526
RRWL CNP L++II + + + ++++LD L L
Sbjct: 478 RRWLVLCNPGLAEIIAERIGEE-YISDLDQLRKLLS 512
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 784 bits (2027), Expect = 0.0
Identities = 239/524 (45%), Positives = 332/524 (63%), Gaps = 24/524 (4%)
Query: 24 PLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVD 83
N+ HV+ + S + A+ A + S+RD L+ WN+T F D
Sbjct: 36 KKFNKAEDFQDRFIDHVETTLARSLYNCDDMVAYEAASMSIRDNLVIDWNKTQQKFTTRD 95
Query: 84 PKQTYYLSMEFLQGRTLTNAIGSLDIQNA-------------YADALNNLGHVLEEIAEQ 130
PK+ YYLS+EFL GR L NA+ ++ I++ AL+ LG LE++ +Q
Sbjct: 96 PKRVYYLSLEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQ 155
Query: 131 EKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEK 190
E DA LGNGGLGRLA+CF+DSMAT +PAWGYGLRY YG+F QKI Q E + WL
Sbjct: 156 EPDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNS 215
Query: 191 FSPWEVVRHDVVFPVRFFGSVMVNPNG-----TRKWVGGEVVQAVAYDIPIPGYKTKNTI 245
+PWE+ R++V PV F+G V G +W+GGE V AVAYD P+PG+KT N
Sbjct: 216 GNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVN 275
Query: 246 SLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFF 305
+LRLW A+ + +F+L +FN+G Y+++ RA+ I AVLYP D+ +GK LRLKQQ+F
Sbjct: 276 NLRLWQARPT-TEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYF 334
Query: 306 LCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEA 365
C+ASL D++ RFK KS R W+EFP +VA+QLNDTHPTLAI EL R+L+D E L W EA
Sbjct: 335 WCAASLHDILRRFK--KSKRPWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEA 392
Query: 366 WDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESK 425
WDI T+T AYTNHTV+ EALEKW + + LLPRH+EII +I+ F+ V
Sbjct: 393 WDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKFPKDVDL 452
Query: 426 IPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLW-PNKLQNK 484
+ + I++ N + +RMA L +V +H VNGV +LHS+++K +F D++ + P+K N
Sbjct: 453 LSRISIIEENSPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFKDFIKFYGPSKFVNV 512
Query: 485 TNGITPRRWLRFCNPELSKIITKWL--KTDQWVTNLDLLVGLRQ 526
TNGITPRRWL+ NP L+K+I++ L T++++ ++ L L +
Sbjct: 513 TNGITPRRWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEK 556
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 772 bits (1996), Expect = 0.0
Identities = 205/505 (40%), Positives = 286/505 (56%), Gaps = 17/505 (3%)
Query: 22 ANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNK 81
+ P+ N+ +S Q S + P Q + A +E++ + L Q
Sbjct: 1 SQPIFND-KQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVA--- 56
Query: 82 VDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGL 141
+ + Y+SMEFL GR N + +L D+L L ++ E+E D ALGNGGL
Sbjct: 57 -NQRHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGL 115
Query: 142 GRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDV 201
GRLA+CFLDSMAT+ A GYGL Y+YGLF+Q Q E +DW PW +
Sbjct: 116 GRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEAL 175
Query: 202 VFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNL 261
V G V + +W + A+D+P+ GY+ LRLW A + F+L
Sbjct: 176 DVQVGIGGKVTKD----GRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHA-HPFDL 230
Query: 262 FQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKER 321
+FNDG + A Q A+++ VLYP D+ EGK LRL QQ+F C+ S+ D++ R
Sbjct: 231 TKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHH-- 288
Query: 322 KSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVL 381
+GR+ E +QLNDTHPT+AIPEL+R+L+DE + WD+AW IT++T AYTNHT++
Sbjct: 289 LAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLM 348
Query: 382 PEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVV 441
PEALE+W ++ LLPRHM+II EI+ RF +V T E + ++ + V
Sbjct: 349 PEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDK----QV 404
Query: 442 RMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPEL 501
MANLCVV VNGVA LHSD++ DLF +Y LWPNK N TNGITPRRW++ CNP L
Sbjct: 405 HMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPAL 464
Query: 502 SKIITKWLKTDQWVTNLDLLVGLRQ 526
+ ++ K L+ + W +LD L+ L +
Sbjct: 465 AALLDKSLQKE-WANDLDQLINLEK 488
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 766 bits (1980), Expect = 0.0
Identities = 209/501 (41%), Positives = 283/501 (56%), Gaps = 25/501 (4%)
Query: 26 ANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPK 85
+ A+ + HV+ + + + + +V++R+ W T + +
Sbjct: 3 PEKQPLPAALVGSHVRAAAGTPADLATDRKFWTGLSRAVQERIADDWERTREAYG--AAR 60
Query: 86 QTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLA 145
Q +Y S EFL GR L N + +L + + A A LGH L +I E E DAALGNGGLGRLA
Sbjct: 61 QQHYFSAEFLMGRALLNNLTNLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLA 120
Query: 146 SCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPV 205
+CFLDS T + P GYGL YR+GLF+Q + Q E + W E+ P+ + R V
Sbjct: 121 ACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVV 180
Query: 206 RFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFN 265
F +A+ YD+PI GY T N +LRLW A+ E+F+ FN
Sbjct: 181 CF---------------DDMKTRAIPYDMPITGYGTHNVGTLRLWKAEPW-EEFDYDAFN 224
Query: 266 DGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGR 325
++ A R IC VLYP D+T EGK LR++QQ+F SASLQ MI +
Sbjct: 225 AQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHL--AHHK 282
Query: 326 QWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEAL 385
S F +VQLNDTHP LAIPELMRLLMDE +GW+E+W I ++T AYTNHTVL EAL
Sbjct: 283 DLSNFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEAL 342
Query: 386 EKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMAN 445
E+W + + +L R EII EID+RF + D E I M + + V MA
Sbjct: 343 EQWDEQIFQQLFWRVWEIIAEIDRRFRLERAADGLD-EETINRMAPIQHG----TVHMAW 397
Query: 446 LCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKII 505
+ +A+++NGVA LH++I+KA+ AD+ +LWP K NKTNG+TPRRWLR NP LS ++
Sbjct: 398 IACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLL 457
Query: 506 TKWLKTDQWVTNLDLLVGLRQ 526
T+ +D WVT+LD L LR
Sbjct: 458 TRLSGSDDWVTDLDELKKLRS 478
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 2e-10
Identities = 82/585 (14%), Positives = 147/585 (25%), Gaps = 185/585 (31%)
Query: 76 YHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVL--EEIAE--QE 131
+HH + + Y + L + + D + D + +L EEI
Sbjct: 3 HHHHMDFETGEHQYQYKDILS-VFEDAFVDNFDCK----DVQDMPKSILSKEEIDHIIMS 57
Query: 132 KDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQ-----GQEEVAED 186
KDA G RL L + LR Y I + + +
Sbjct: 58 KDAVSG---TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 187 WLEK-------FSPWEVVRHDVVFPVR-------------FFGSVMVNPNGTRKWVGGEV 226
++ F+ + V R +R G ++ G+ K V
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VL---GSGKTW---V 166
Query: 227 VQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVL 286
V + + K DF +F N S + Q++ +
Sbjct: 167 ALDVCLSYKV---QCKM--------------DFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 287 YPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQ--------WS-------EFP 331
P ++ +K + S+Q + R + K +
Sbjct: 210 DPNWTSRSDHSSNIKLRI----HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 332 SKVAVQLNDTHPTLAIPELMR----LLMDEEGLGWDEAWDITTRTVAYTNHTV--LPEAL 385
K+ + T + L L DE + + Y + LP
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPR-- 320
Query: 386 EKWSQAVMWKLLPRHMEIIEEIDKRFIA---------------MVRSTRSDLES------ 424
+ + PR + II E + +A ++ S+ + LE
Sbjct: 321 ----EVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 425 -----------KIPS--MCILDNNPKKPVVR-MANLCV-------------VSAH----- 452
IP+ + ++ + K V + N +S
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 453 ---TVNGVAQLHSDILKADLFADYVSLW---PNKLQN----------KTNGITPR----- 491
+ LH I+ P L K R
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 492 ------RWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQVYMK 530
R+L KI + + L+ L L+ Y
Sbjct: 495 MVFLDFRFLE------QKIRHDSTAWNASGSILNTLQQLKF-YKP 532
Score = 40.2 bits (93), Expect = 0.002
Identities = 59/432 (13%), Positives = 102/432 (23%), Gaps = 142/432 (32%)
Query: 58 FATAESVRDRLIQQWNETYHHFNK-----VDPKQTYYLSMEFLQGRTLTNAIGSLDIQNA 112
S L + + D L + +Q + L
Sbjct: 189 LKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAE-----LRRLLKSKP 242
Query: 113 YADALNNLGHVLEEIAEQEKDAALGNGGLGRLASC-------------FLDSMAT----L 155
Y + L VL + + A C FL + T L
Sbjct: 243 YENCLL----VLLNVQNAKAWNAFNLS-------CKILLTTRFKQVTDFLSAATTTHISL 291
Query: 156 NLPAWGYGLRYRYGLFKQKITKQGQE-----------------EVAEDWLEKFSPWEVVR 198
+ + L + + + Q+ E D L + W+ V
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 199 HDVVFPVRFFGSVMVN---PNGTRKWVGGEVVQAVAY--------DIPIPGYKTKNTISL 247
D + + +N P RK + IP +SL
Sbjct: 352 CDKLTTII---ESSLNVLEPAEYRK----------MFDRLSVFPPSAHIP----TILLSL 394
Query: 248 RLWDAKASAEDFNLF-----------QFNDGQY-------------ESAAQLHSR---AQ 280
+W ++ + Q + E+ LH
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 281 QICAVLYPGDST---EEG----------KLLRLKQQFFLCSASLQDMILRFKERK---SG 324
I D + K + ++ L D RF E+K
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFLEQKIRHDS 511
Query: 325 RQWSEFPSKVAV--QL---------NDTHPTLAIPELMRLLMD-EEGLGWDEAWDITTRT 372
W+ S + QL ND + ++ L EE L + D+
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 373 VAYTNHTVLPEA 384
+ + + EA
Sbjct: 572 LMAEDEAIFEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.002
Identities = 44/247 (17%), Positives = 73/247 (29%), Gaps = 103/247 (41%)
Query: 35 NISYHVQYSP-----HFSPTK------------FEPEQAFFATAESVRDRLIQQWNE--T 75
+I V +P HF K FE + +++ ++ NE T
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET----IVDGKLKTEKIFKEINEHST 1715
Query: 76 YHHFNKVDPK----QTYY-----LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEE 126
+ F K T + ME L + G + +A GH L E
Sbjct: 1716 SYTFR--SEKGLLSATQFTQPALTLMEKAAFEDLKSK-GLIPADATFA------GHSLGE 1766
Query: 127 IAEQEKDAALGNGGLGRLASCFLDSM---ATLNLPAWGYGLRYRYGLFKQKITKQGQEEV 183
A AL + D M + + + + YR G+ Q V
Sbjct: 1767 YA------AL---------ASLADVMSIESLVEV------VFYR-GMTMQ-------VAV 1797
Query: 184 AEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPN---------GTRKWV------GGEVVQ 228
D E+ R + +G + +NP + V G +V+
Sbjct: 1798 PRD--------ELGRSN-------YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 229 AVAYDIP 235
V Y++
Sbjct: 1843 IVNYNVE 1849
Score = 30.8 bits (69), Expect = 1.5
Identities = 58/312 (18%), Positives = 89/312 (28%), Gaps = 112/312 (35%)
Query: 56 AFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQG-RTLTNAIGSLDI-QNAY 113
A +S W + K +++ F G R A + + +
Sbjct: 281 VAIAETDS--------WESFFVSVRK-------AITVLFFIGVRC-YEAYPNTSLPPSIL 324
Query: 114 ADALNN---------------LGHVLEEIAE------QEKDA--ALGNGGLGRLASCFL- 149
D+L N V + + + K +L NG A +
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-----AKNLVV 379
Query: 150 ----DSMATLNLPAWGYGLRYRYGLFKQKI-TKQGQEEVAEDWLEKFSPWEVVRHDVVFP 204
S+ LNL LR K K + Q + FS R + F
Sbjct: 380 SGPPQSLYGLNL-----TLR------KAKAPSGLDQSRI------PFSE----RK-LKFS 417
Query: 205 VRF------FGSVMVNP--NGTRKWVGGEVVQAVAYDIPIPGYKTKN---------TISL 247
RF F S ++ P + K + V A DI IP Y T + +IS
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 248 RL----------WDAKASAEDFNLFQFNDGQYESAAQLHSRAQQ------ICA-VLYPGD 290
R+ W+ + ++ F G L R + I A L
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Query: 291 STEEGKLLRLKQ 302
+ G KQ
Sbjct: 538 DDDYG----FKQ 545
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 34.6 bits (79), Expect = 0.089
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 18/129 (13%)
Query: 11 EAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFE--PEQAFFATAESVRDRL 68
++ + A+ E + + V F + FE + + V++ +
Sbjct: 26 GGQQMGRGSMMADEE-EEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEM 84
Query: 69 IQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTN-------AIGSLD----IQNAYADAL 117
+T +V L+G+ L A L ++ +A
Sbjct: 85 ----EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140
Query: 118 NNLGHVLEE 126
N LG V +
Sbjct: 141 NQLGEVYWK 149
Score = 30.7 bits (69), Expect = 1.1
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 61 AESVRDRLIQQWNETYH---HFNKVDPKQTYYLSMEFLQGRTLTNAIGSLD----IQNAY 113
A+ V +L + Y + + + + +Q + + ++
Sbjct: 43 AKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEE-MEKTLQQMEEVLGSAQVE 101
Query: 114 ADALNNLGHVLEEIAEQEKDA 134
A AL G L + +A
Sbjct: 102 AQALMLKGKALNVTPDYSPEA 122
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 30.3 bits (69), Expect = 1.4
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 86 QTYY-LSMEFLQGRTLTNAIGSLD----IQNAYADALNNLGHVLEEIAEQEK 132
L+ME+++G+ A S++ A + + + +K
Sbjct: 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 28.5 bits (65), Expect = 1.5
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 105 GSLDIQNAYADALNNLGHVLEEIAEQEK 132
G++D N A+A NLG+ + + ++
Sbjct: 1 GAMDPGN-SAEAWYNLGNAYYKQGDYDE 27
Score = 27.7 bits (63), Expect = 2.4
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 96 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEEIAEQEK 132
QG AI L++ A+A NLG+ + + ++
Sbjct: 22 QGD-YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Score = 27.7 bits (63), Expect = 3.0
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 96 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEE 126
QG AI L++ A+A NLG+ ++
Sbjct: 56 QGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase
fold, transferase; 2.02A {Caenorhabditis elegans} SCOP:
d.144.1.8
Length = 429
Score = 30.0 bits (66), Expect = 2.3
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 34 SNISYHVQYSPHFSPTKFEPEQAF---FATAESVRDRLIQQWNETYHHFNKVDPKQTYYL 90
SN+ + + S + P + EP + + E+ + + T + PK
Sbjct: 86 SNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIF 145
Query: 91 S----MEFLQGRTLTNA 103
S E++ R L+
Sbjct: 146 SGGRLEEYIPSRPLSCH 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 28.5 bits (65), Expect = 2.5
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 105 GSLDIQNAYADALNNLGHVLEEIAEQEK 132
G++D N A+A NLG+ + + ++
Sbjct: 1 GAMDPGN-SAEAWYNLGNAYYKQGDYDE 27
Score = 27.4 bits (62), Expect = 5.2
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 96 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEE 126
QG AI L++ A+A NLG+ +
Sbjct: 56 QGD-YDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89
Score = 27.0 bits (61), Expect = 8.0
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 96 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEE 126
QG AI L++ A+A NLG+ ++
Sbjct: 90 QGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 29.2 bits (66), Expect = 2.7
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 86 QTYY-LSMEFLQGRTLTNAIGSLD----IQNAYADALNNLGHVLEEIAEQEK 132
Y L + +LQ A L I + ADA L V + E +
Sbjct: 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKL 89
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 29.0 bits (66), Expect = 2.9
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 96 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGL 141
G + A+ + + Y L + Q +D G G L
Sbjct: 52 LGL-VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL 100
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.3
Identities = 6/28 (21%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 320 ERKSGRQWSEFPSKVAVQLNDTHPTLAI 347
E+++ ++ + + + +D+ P LAI
Sbjct: 18 EKQALKK---LQASLKLYADDSAPALAI 42
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural
genomics consortium, TBSG domain, signal transduction;
HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB:
3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A*
3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Length = 311
Score = 28.8 bits (65), Expect = 4.0
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 83 DPKQTYYLSMEFLQGRTLTNAI---GSLDIQNA 112
Y+ ME++ G TL + + G + + A
Sbjct: 86 PAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRA 118
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription
regulator; 1.80A {Streptococcus mutans}
Length = 204
Score = 28.7 bits (64), Expect = 4.1
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 175 ITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 211
IT+ G++E+A +L+ E+ + D + + F S+
Sbjct: 105 ITESGKKELAS-YLQSDVNDEIFKSDFLMRLFFGNSL 140
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus
subsp}
Length = 294
Score = 28.7 bits (65), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 87 TYYLSMEFLQGRTLTNAI---GSLDIQNA 112
YYL ME+++G TL+ I G L + A
Sbjct: 85 CYYLVMEYIEGPTLSEYIESHGPLSVDTA 113
>3bjv_A RMPA; alpha/beta three layer sandwich, transferase; 2.40A
{Streptococcus mutans}
Length = 161
Score = 28.1 bits (63), Expect = 4.9
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 335 AVQLNDTHPTLAIPELMRLLMDEE 358
A + H ++AIP+++ L +
Sbjct: 104 AATSSKIHTSVAIPQIIALFELDH 127
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Length = 172
Score = 28.3 bits (62), Expect = 5.1
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 195 EVVRHDVVFPVRFFGSVMV-NPNGTRKWVGGEVVQA 229
E + ++F + GS + + K V Q
Sbjct: 2 EDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQE 37
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 28.8 bits (65), Expect = 5.3
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 14/113 (12%)
Query: 31 AIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKV-----DPK 85
+ SN S + K + Q + A D + +K+
Sbjct: 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG--ADYTAAITFLDKILEVCVWDA 154
Query: 86 QTYYL--SMEFLQGRTLTNAIGSLD----IQNAYADALNNLGHVLEEIAEQEK 132
+ L +G AI L +++ +A + + ++ + E
Sbjct: 155 ELRELRAECFIKEGE-PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 28.5 bits (64), Expect = 5.4
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 14/113 (12%)
Query: 31 AIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKV---DPKQT 87
+ SN S + + K + Q + A + + +K+
Sbjct: 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS--GDYTAAIAFLDKILEVCVWDA 177
Query: 88 YYLSM----EFLQGRTLTNAIGSLD----IQNAYADALNNLGHVLEEIAEQEK 132
+ +G AI L ++N +A + + ++ + E
Sbjct: 178 ELRELRAECFIKEGE-PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer,
antibiotic resistance, transfer; HET: GDP; 1.70A
{Enterococcus gallinarum} PDB: 3tdv_A*
Length = 306
Score = 28.5 bits (63), Expect = 5.8
Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 23/143 (16%)
Query: 89 YLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEI----AEQEKDAALGNGGLGRL 144
++ +QG+ L ++ +A L + E+ E A + L
Sbjct: 89 FVGYRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNK 148
Query: 145 ASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWE---VVRHDV 201
+++ P LR + ++ + H
Sbjct: 149 ILLLSEAVEDQVFPLLDESLR------------DYLTLRFQSYMTHPVYTRYTPRLIHGD 196
Query: 202 VFPVRFFGSVMVNPNGTRKWVGG 224
+ P + N N + + G
Sbjct: 197 LSP----DHFLTNLNSRQTPLTG 215
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 28.2 bits (63), Expect = 5.9
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 106 SLDIQNAYADALNNLGHVLEEIAEQEKDA 134
L ++ A LG+ AEQEK
Sbjct: 114 ILQLEADNLAANIFLGNYYYLTAEQEKKK 142
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 28.4 bits (64), Expect = 6.0
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 95 LQGRTLTNAIGS----LDIQNAYADALNNLGHVLEEIAEQEKDAALG 137
L G NA+ L ++ ++ LGH +E + +A +G
Sbjct: 282 LMGN-FENAVDYFHTALGLRRDDTFSVTMLGHCIEMY-IGDSEAYIG 326
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase,
structural genomics CONS SGC, hemicholinium-3,
phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens}
PDB: 3lq3_A* 2ig7_A*
Length = 379
Score = 28.3 bits (62), Expect = 6.5
Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 8/78 (10%)
Query: 34 SNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHH----FNKVDPKQTYY 89
SN+ + H EP + ++ + E+ + P+
Sbjct: 63 SNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGV 122
Query: 90 LS----MEFLQGRTLTNA 103
+++ R L
Sbjct: 123 FPEGRLEQYIPSRPLKTQ 140
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti
factor, transcription; 2.20A {Vibrio cholerae} SCOP:
a.4.5.61
Length = 179
Score = 27.9 bits (62), Expect = 6.6
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 175 ITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 211
IT+ G+ + E W ++ + VR + +
Sbjct: 71 ITQAGRSALGE-WFDQPTAHPTVRDEFSAKLMACSVQ 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 27.4 bits (62), Expect = 7.5
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 96 QGRTLTNAIGS----LDIQNAYADALNNLGHVLEE 126
QG AI L++ A+A NLG+ +
Sbjct: 48 QGD-YDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 27.0 bits (60), Expect = 8.1
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 88 YYLSMEFLQGRTLTNAIGSLD----IQNAYADALNNLGHVLEEIAEQEKDA 134
+ L+ L A + + + +A +LG E E++ A
Sbjct: 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLA 70
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus
THER HB8, hydrolase, riken structural
genomics/proteomics initia RSGI; 1.70A {Thermus
thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Length = 126
Score = 26.9 bits (60), Expect = 8.2
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 64 VRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQG 97
VR ++ T + K ++ ++ M
Sbjct: 53 VRAEVLLPLYPTRYVNPKGVEREVHWFLMRGEGA 86
>3f83_A Fusion of the minor pilin CFAE and major pilin CF; ETEC, E. coli,
CFA/I, CFAB, diarrhea, fimbriae, projection, fimbrium,
cell adhesion; 2.30A {Escherichia coli}
Length = 519
Score = 28.2 bits (62), Expect = 8.4
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 244 TISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQ 303
T ++ D S+ +N+ Y + L+ R +C +T G
Sbjct: 11 TNTIGPHDRGGSSPIYNILNSYLTAYNGSHHLYDRMSFLCL---SSQNTLNGACPSSDAP 67
Query: 304 FFLCSASLQDMILRFKERKSGRQW 327
++ L+F E++S +
Sbjct: 68 GTATIDGETNITLQFTEKRSLIKR 91
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 26.5 bits (59), Expect = 9.5
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 88 YYLSMEFLQGRTLTNAIGS----LDIQNAYADALNNLGHVLEEIAEQEK 132
Y L+ E L+ + A+ ++ Y +LG + E + +
Sbjct: 11 YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDD 59
>2oqt_A Hypothetical protein SPY0176; APC29699, putative PTS IIA domain,
streptococcus pyogenes M1 GAS, structural genomics,
PSI-2; 2.41A {Streptococcus pyogenes serotype M1}
Length = 162
Score = 26.9 bits (60), Expect = 9.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 335 AVQLNDTHPTLAIPELMRLLMDEE 358
A H T+AIP+++ L +
Sbjct: 105 AATDPSIHTTVAIPQIVALFELDN 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.407
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,361,894
Number of extensions: 503355
Number of successful extensions: 1496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1463
Number of HSP's successfully gapped: 82
Length of query: 530
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 432
Effective length of database: 3,965,535
Effective search space: 1713111120
Effective search space used: 1713111120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)