Query 009652
Match_columns 529
No_of_seqs 101 out of 116
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 15:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04484 DUF566: Family of unk 100.0 1.5E-52 3.2E-57 423.6 20.4 217 292-529 1-221 (311)
2 PF15003 HAUS2: HAUS augmin-li 47.0 28 0.00061 36.5 4.6 41 485-525 44-84 (277)
3 PRK00846 hypothetical protein; 38.4 1.7E+02 0.0037 25.4 7.3 44 477-520 9-52 (77)
4 COG2882 FliJ Flagellar biosynt 38.2 1.1E+02 0.0024 29.5 6.7 89 436-526 7-116 (148)
5 PRK02793 phi X174 lysis protei 36.1 2E+02 0.0043 24.3 7.2 43 479-521 6-48 (72)
6 cd07592 BAR_Endophilin_A The B 31.8 2.9E+02 0.0063 28.0 8.9 76 453-528 129-216 (223)
7 PRK04406 hypothetical protein; 30.3 3.2E+02 0.0069 23.3 7.6 43 479-521 9-51 (75)
8 KOG3119 Basic region leucine z 30.1 2.6E+02 0.0057 28.8 8.5 70 443-524 182-252 (269)
9 KOG3976 Mitochondrial F1F0-ATP 27.1 3.3E+02 0.0072 28.4 8.4 62 464-527 153-222 (247)
10 PRK04325 hypothetical protein; 27.0 3.2E+02 0.007 23.1 7.1 41 481-521 9-49 (74)
11 cd07600 BAR_Gvp36 The Bin/Amph 26.0 3.3E+02 0.0072 27.9 8.2 59 461-519 105-171 (242)
12 PRK02119 hypothetical protein; 25.9 3.8E+02 0.0081 22.7 7.2 40 482-521 10-49 (73)
13 PF04102 SlyX: SlyX; InterPro 24.9 4E+02 0.0087 22.0 7.5 39 483-521 6-44 (69)
14 PF10455 BAR_2: Bin/amphiphysi 24.3 3.3E+02 0.0071 28.9 8.0 32 489-520 186-217 (289)
15 KOG3091 Nuclear pore complex, 23.7 1.2E+02 0.0027 34.3 5.0 88 434-525 330-425 (508)
16 PRK00295 hypothetical protein; 23.0 4.2E+02 0.0091 22.1 6.9 39 483-521 7-45 (68)
17 PF05377 FlaC_arch: Flagella a 22.3 3.4E+02 0.0073 22.4 6.0 43 486-528 5-51 (55)
18 PRK00736 hypothetical protein; 22.2 4.4E+02 0.0096 21.9 6.9 39 483-521 7-45 (68)
No 1
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=100.00 E-value=1.5e-52 Score=423.56 Aligned_cols=217 Identities=49% Similarity=0.685 Sum_probs=165.9
Q ss_pred cccccCCCchhhcccCccccCCCCCCcccccccccccc-ccccccCCCCCCCcccCCCCcccCCCcccCCcccccCCCCC
Q 009652 292 ESVSSGSTSEAHERNGVGIVNPRGPRGIVVPARFWHET-SNRLRQQADPSTPVSKTNGLKIACTPKLIVPKKFGFDSPAS 370 (529)
Q Consensus 292 eSvSSgsss~~~~~~~~~~~~~~~~rg~~vpARf~q~t-~sRlrRl~~pgsp~~~~~~~~~~~~~k~~~~kK~~~~s~~S 370 (529)
|+|+||+++|.++.+. ..++|..-.+ |||+++ ++|+++|++|+++.+..++.+...+.. .+.....+.+
T Consensus 1 ~svsS~sts~~~~~~~-----~~s~r~~~~~-r~~~~~~~sr~~~~~~~~s~~~s~~~~~~~s~s~----~~~~~~~~~s 70 (311)
T PF04484_consen 1 DSVSSGSTSGSQSPPR-----RVSRRRLSSS-RFWQESTRSRSRRLSDPSSPRSSSPSSPTSSSSS----NSSSRSNSKS 70 (311)
T ss_pred CCcCCCCCCCCCCCCC-----CCCCCCCCCc-cccccccCCcccccCCCCCCCCCCCCccccCCCc----cccccccccc
Confidence 6899999999988631 1223333333 999997 999999999999977776655433332 1222222223
Q ss_pred CCCccccCCCCCCCCcCC--CCCCCCCcccccCCCCCCCCC-CCCccccccCCCCcccccccCCCCccccchhhcccccc
Q 009652 371 SPKGVVNTRGLSSPLRSA--ARPASPSKLVTSAGSSPVRGL-SPSRVRNTAMGMNSSNLISVSNAPSVMSYAVDVRRGKV 447 (529)
Q Consensus 371 Sp~~~~~sr~~~SP~r~~--~RpsSPsk~~~~s~~spsR~~-sPsR~R~~~~~~ss~~~~~~~~~~silsf~~D~rkgKk 447 (529)
.+.+. .++++.||.|.. ..+.+|+++... + .+.. +|+|.|++++.. ++++.++||+|++|++||||
T Consensus 71 ~~~~~-~ss~~~Sp~r~~~~~~~~~~~~~~~~---s-~~~~~sPsr~r~~~~~~------~~~~~~si~s~~~d~~rgkk 139 (311)
T PF04484_consen 71 LPGGS-LSSWALSPSRSSSSSSPSSPSSLSTS---S-SSPSSSPSRSRRSTSSG------QSNSGPSILSFAADVRRGKK 139 (311)
T ss_pred ccCCc-CCcCCCCCCCCCCCCCCCCCCccccC---C-CCCCCCCCCCCCCCCcc------cCCCCccccccccccccccc
Confidence 33333 334456887742 233344444332 1 1222 699999664322 44788999999999999999
Q ss_pred CCccchhhhhhhhhhccchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHhhhh
Q 009652 448 GENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQ 527 (529)
Q Consensus 448 ~~~~~Ed~HqLRLLhNR~LQWRFaNARAea~~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~~IL~~Q 527 (529)
+++||||+|||||||||||||||||||||+++++|+++||++||++|++|++||++|++||||||++||++||++||++|
T Consensus 140 ~~~~~Ed~H~LRLLhNR~LQWRFaNArAeaa~~~q~~~aE~~L~~~w~~is~Lr~sV~~KRi~lq~~kq~~KL~~IL~~Q 219 (311)
T PF04484_consen 140 GASQIEDAHQLRLLHNRLLQWRFANARAEAALSAQKANAEKKLYNAWLRISELRDSVAMKRIELQRLKQELKLNSILKSQ 219 (311)
T ss_pred CcchhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 009652 528 VR 529 (529)
Q Consensus 528 m~ 529 (529)
|.
T Consensus 220 ~~ 221 (311)
T PF04484_consen 220 MP 221 (311)
T ss_pred Hh
Confidence 94
No 2
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=47.02 E-value=28 Score=36.47 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHhh
Q 009652 485 NAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILK 525 (529)
Q Consensus 485 ~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~~IL~ 525 (529)
..+..||..-..|..|+..+.++.+|+|+++++..-..|++
T Consensus 44 ~~s~~l~s~L~QIt~iQaeI~q~nlEielLkleKeTADltH 84 (277)
T PF15003_consen 44 EKSSDLFSRLRQITNIQAEIDQLNLEIELLKLEKETADLTH 84 (277)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHhhhC
Confidence 34567899999999999999999999999999977766654
No 3
>PRK00846 hypothetical protein; Provisional
Probab=38.41 E-value=1.7e+02 Score=25.37 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 009652 477 AALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKL 520 (529)
Q Consensus 477 a~~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL 520 (529)
..+......-|..|...-+.|-+|.+.|+....++.+|+..+++
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~ 52 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 52 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556678888888889999999999999998888888764
No 4
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=38.16 E-value=1.1e+02 Score=29.46 Aligned_cols=89 Identities=22% Similarity=0.226 Sum_probs=46.7
Q ss_pred ccchhhcccccc----------CCccchhhhhhhhh---hccchhhHHHHHhHHHHHHH-H-------HHHHHHHHHHHH
Q 009652 436 MSYAVDVRRGKV----------GENRVVDAHLLRLF---HNRLLQWRFVNARANAALSA-Q-------RLNAERSLYNAW 494 (529)
Q Consensus 436 lsf~~D~rkgKk----------~~~~~Ed~HqLRLL---hNR~LQWRFaNARAea~~~~-Q-------k~~AE~~L~~aW 494 (529)
|....|+++.++ -......+|+|++| +|.|.|= +|-+....+.+ | ..+-|..++..-
T Consensus 7 L~~l~dl~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~--~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~ 84 (148)
T COG2882 7 LQKLLDLAKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQN--LNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQ 84 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556655432 23455668899988 5666642 22222222222 2 223334444444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHhhh
Q 009652 495 IASSRLRESVRTKRTELQLLKQNLKLTSILKS 526 (529)
Q Consensus 495 ~~is~Lr~sV~~KRieLQ~lkq~~KL~~IL~~ 526 (529)
..++.++.-|-.+|--++..++++|-..+|++
T Consensus 85 ~~~~~~~~~ve~~r~~w~ek~~~~k~~e~L~e 116 (148)
T COG2882 85 SQLSKLRKQVEQKREIWQEKQIELKALEKLKE 116 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666666666666666654
No 5
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.10 E-value=2e+02 Score=24.27 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 009652 479 LSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (529)
Q Consensus 479 ~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~ 521 (529)
+......-|..|...-+.|-+|.+-|++...+++.|+..+++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888888999999999999999999998887754
No 6
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=31.80 E-value=2.9e+02 Score=27.95 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=56.6
Q ss_pred hhhhhhhhhhccchhhHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHhHH
Q 009652 453 VDAHLLRLFHNRLLQWRFVNAR-----------ANAALSAQRLNAERSLYNAWIA-SSRLRESVRTKRTELQLLKQNLKL 520 (529)
Q Consensus 453 Ed~HqLRLLhNR~LQWRFaNAR-----------Aea~~~~Qk~~AE~~L~~aW~~-is~Lr~sV~~KRieLQ~lkq~~KL 520 (529)
+..|..+.|++|-|.|-.+-.+ |++.+..++..|+..+|++-.. ...++.....--.+++-.++-.++
T Consensus 129 ~i~k~RKkLe~rRLdyD~~k~k~~k~~eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~ 208 (223)
T cd07592 129 EINHHRKKLEGRRLDYDYKKRKQGKGPDEELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEI 208 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999888776 4666777788888888998876 666666666666777777777666
Q ss_pred HHHhhhhc
Q 009652 521 TSILKSQV 528 (529)
Q Consensus 521 ~~IL~~Qm 528 (529)
..-|..|+
T Consensus 209 L~~l~~~L 216 (223)
T cd07592 209 LEELQSKL 216 (223)
T ss_pred HHHHHHHH
Confidence 55555443
No 7
>PRK04406 hypothetical protein; Provisional
Probab=30.25 E-value=3.2e+02 Score=23.33 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 009652 479 LSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (529)
Q Consensus 479 ~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~ 521 (529)
+......-|..|...-+.|-+|.+-|+....+|+.|+..+++.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556788888899999999999999999999999887754
No 8
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=30.10 E-value=2.6e+02 Score=28.82 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=45.9
Q ss_pred cccccCCccchhhhhhhhhhccchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH-HH
Q 009652 443 RRGKVGENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLK-LT 521 (529)
Q Consensus 443 rkgKk~~~~~Ed~HqLRLLhNR~LQWRFaNARAea~~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~K-L~ 521 (529)
++.++...+-++.|..|.=+| | +++.-....+....-.+|++|..|-+--...|.+++.|++++. |.
T Consensus 182 ~~~~~~~~~~~~~y~err~rN--------N----~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 182 SKLSSPVEKKDPEYKERRRRN--------N----EAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred ccCCCchhcCCHHHHHHHHhh--------h----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777776554 2 2333344445555577899999998888888888888888865 44
Q ss_pred HHh
Q 009652 522 SIL 524 (529)
Q Consensus 522 ~IL 524 (529)
.++
T Consensus 250 ~~~ 252 (269)
T KOG3119|consen 250 RLF 252 (269)
T ss_pred HHH
Confidence 443
No 9
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=27.07 E-value=3.3e+02 Score=28.44 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=39.3
Q ss_pred cchhhHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHhhhh
Q 009652 464 RLLQWRFVNARANAALSAQRLNAE--------RSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQ 527 (529)
Q Consensus 464 R~LQWRFaNARAea~~~~Qk~~AE--------~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~~IL~~Q 527 (529)
--+|| ++...+.-+-+|+.+++ +++|.+-..+-+-=|+-..-+..+.++.||.-|-+|+..|
T Consensus 153 ~sqq~--~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~E~K~~lDy~v~~e~~~rr~eqe~l~ksI~~~v 222 (247)
T KOG3976|consen 153 KSQQA--LASKTEYLFDVSKENIALQLEATYREQLVRVAKEVKRRLDYWVETEASKRRLEQEQLLKSINSRV 222 (247)
T ss_pred HHhHH--HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688 67766666666665544 4667776666665566666666666666666666666543
No 10
>PRK04325 hypothetical protein; Provisional
Probab=26.99 E-value=3.2e+02 Score=23.09 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 009652 481 AQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (529)
Q Consensus 481 ~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~ 521 (529)
.....-|..|...-.+|-+|.+.|++...+|++|+..+++.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555678888888999999999999999999888887654
No 11
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.00 E-value=3.3e+02 Score=27.93 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=40.4
Q ss_pred hhccchhh-----HHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 009652 461 FHNRLLQW-----RFVNARANAALSAQRLN---AERSLYNAWIASSRLRESVRTKRTELQLLKQNLK 519 (529)
Q Consensus 461 LhNR~LQW-----RFaNARAea~~~~Qk~~---AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~K 519 (529)
|.+=|++| +.++||-+-...+++.- -+..|..-|..|.++|+.|..+|+.+...|.++|
T Consensus 105 lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ 171 (242)
T cd07600 105 LSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELK 171 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444554 45555555444444322 3356666888999999999999999999998875
No 12
>PRK02119 hypothetical protein; Provisional
Probab=25.88 E-value=3.8e+02 Score=22.70 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 009652 482 QRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (529)
Q Consensus 482 Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~ 521 (529)
....-|..|...-+.|-+|.+-|++..-+|+.|+..+++.
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677888888899999999999998888888887754
No 13
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.87 E-value=4e+02 Score=22.03 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 009652 483 RLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (529)
Q Consensus 483 k~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~ 521 (529)
...-|..|...-+.|-+|.+-|...--+|.+|+..+++.
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677788888899999999999988888888887753
No 14
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=24.28 E-value=3.3e+02 Score=28.85 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 009652 489 SLYNAWIASSRLRESVRTKRTELQLLKQNLKL 520 (529)
Q Consensus 489 ~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL 520 (529)
.|-.-...+.++|+.|..+|+++.-+|.++|.
T Consensus 186 ~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~ 217 (289)
T PF10455_consen 186 TLNTDFKKANKARKKVENSRLQFDAARANLKN 217 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444456778999999999999999999887
No 15
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.69 E-value=1.2e+02 Score=34.32 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=51.8
Q ss_pred ccccchh-hccccccCCccchhhhhhhhhh--ccchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--
Q 009652 434 SVMSYAV-DVRRGKVGENRVVDAHLLRLFH--NRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKR-- 508 (529)
Q Consensus 434 silsf~~-D~rkgKk~~~~~Ed~HqLRLLh--NR~LQWRFaNARAea~~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KR-- 508 (529)
.|+-++. |+++.-|...++-+.|++||=| +++=+- + +-++...+..+++.+.+..+-.+|+.|=-.+.-.|
T Consensus 330 PVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eL---q-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~ 405 (508)
T KOG3091|consen 330 PVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTEL---Q-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKR 405 (508)
T ss_pred ceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555 8888888888888888888743 333222 2 44455555666777777777788776543332221
Q ss_pred ---HHHHHHHHHhHHHHHhh
Q 009652 509 ---TELQLLKQNLKLTSILK 525 (529)
Q Consensus 509 ---ieLQ~lkq~~KL~~IL~ 525 (529)
|....+++..||+.||.
T Consensus 406 G~~L~~~EE~Lr~Kldtll~ 425 (508)
T KOG3091|consen 406 GYALTPDEEELRAKLDTLLA 425 (508)
T ss_pred CCcCCccHHHHHHHHHHHHH
Confidence 22333444556665553
No 16
>PRK00295 hypothetical protein; Provisional
Probab=23.03 E-value=4.2e+02 Score=22.08 Aligned_cols=39 Identities=8% Similarity=-0.037 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 009652 483 RLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (529)
Q Consensus 483 k~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~ 521 (529)
...-|..|...-+.|-+|.+-|++..-+|..|+..+++.
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577778888888899999998888888888777644
No 17
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.28 E-value=3.4e+02 Score=22.38 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh----HHHHHhhhhc
Q 009652 486 AERSLYNAWIASSRLRESVRTKRTELQLLKQNL----KLTSILKSQV 528 (529)
Q Consensus 486 AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~----KL~~IL~~Qm 528 (529)
-|+.|=.+-..|..+++...+-+-+++.+++.+ .|+.++..|+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 466666666777788888888888888887774 5777776665
No 18
>PRK00736 hypothetical protein; Provisional
Probab=22.21 E-value=4.4e+02 Score=21.94 Aligned_cols=39 Identities=8% Similarity=0.087 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 009652 483 RLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (529)
Q Consensus 483 k~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~ 521 (529)
...-|..|...-+.|-+|.+.|++.-.+|..|+..+++.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777778888899999988888888887776644
Done!