Query 009652
Match_columns 529
No_of_seqs 101 out of 116
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 10:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 37.8 65 0.0022 35.3 7.4 25 492-516 128-152 (562)
2 1t6f_A Geminin; coiled-coil, c 34.6 75 0.0026 23.2 4.9 30 490-519 2-31 (37)
3 2v4h_A NF-kappa-B essential mo 31.9 1.5E+02 0.0052 26.2 7.5 42 479-520 29-73 (110)
4 1wlq_A Geminin; coiled-coil; 2 29.0 1.1E+02 0.0038 25.9 5.9 40 488-527 31-70 (83)
5 3efg_A Protein SLYX homolog; x 26.8 1.7E+02 0.0057 24.0 6.6 41 481-521 14-54 (78)
6 3jsv_C NF-kappa-B essential mo 25.4 2.4E+02 0.0084 24.2 7.5 43 478-520 6-51 (94)
7 3ghg_A Fibrinogen alpha chain; 20.4 1.8E+02 0.0061 31.9 7.0 40 489-528 103-144 (562)
8 1m46_B IQ4, IQ4 motif from MYO 16.6 1.2E+02 0.004 20.3 2.9 24 493-517 2-25 (26)
9 3trt_A Vimentin; cytoskeleton, 16.2 4E+02 0.014 20.8 6.6 26 490-515 51-76 (77)
10 3qh9_A Liprin-beta-2; coiled-c 16.1 4E+02 0.014 22.4 6.7 41 478-518 37-77 (81)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.80 E-value=65 Score=35.27 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 009652 492 NAWIASSRLRESVRTKRTELQLLKQ 516 (529)
Q Consensus 492 ~aW~~is~Lr~sV~~KRieLQ~lkq 516 (529)
+.-..|..||..|...|+|||+|.-
T Consensus 128 nQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335666667777776776666643
No 2
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=34.63 E-value=75 Score=23.19 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 009652 490 LYNAWIASSRLRESVRTKRTELQLLKQNLK 519 (529)
Q Consensus 490 L~~aW~~is~Lr~sV~~KRieLQ~lkq~~K 519 (529)
||.|....-+|.+.+.+|-=|+-+||++-+
T Consensus 2 L~~~L~ENekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 2 LYEALKENEKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 899999999999999999999999998865
No 3
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=31.87 E-value=1.5e+02 Score=26.19 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHhHH
Q 009652 479 LSAQRLNAERSLYNAWIASSRLRESVRTKRT---ELQLLKQNLKL 520 (529)
Q Consensus 479 ~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRi---eLQ~lkq~~KL 520 (529)
+.++...||+.|-..=..|-+|+..+++++. .++.|++.+.+
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~I 73 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADI 73 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777888899888888777 44444444433
No 4
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.99 E-value=1.1e+02 Score=25.87 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHhhhh
Q 009652 488 RSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQ 527 (529)
Q Consensus 488 ~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~~IL~~Q 527 (529)
+.||.+....-+|++.|..|+=|+..||++.+...-|-+|
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998876666555
No 5
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.84 E-value=1.7e+02 Score=24.01 Aligned_cols=41 Identities=17% Similarity=0.040 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 009652 481 AQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (529)
Q Consensus 481 ~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~ 521 (529)
.....-|..|...-+.|-+|.+-|++...+|.+|+..+++.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888888899999999999999999998887753
No 6
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=25.44 E-value=2.4e+02 Score=24.24 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHhHH
Q 009652 478 ALSAQRLNAERSLYNAWIASSRLRESVRTKRTEL---QLLKQNLKL 520 (529)
Q Consensus 478 ~~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieL---Q~lkq~~KL 520 (529)
.+.+|...||..|-..-..|-+|...+++++..+ +.|++.+++
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~I 51 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADI 51 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999988888544 344444443
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.36 E-value=1.8e+02 Score=31.93 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHHHHHHH-HHHHHHHHhHHHHHHHHHHhH-HHHHhhhhc
Q 009652 489 SLYNAWIASS-RLRESVRTKRTELQLLKQNLK-LTSILKSQV 528 (529)
Q Consensus 489 ~L~~aW~~is-~Lr~sV~~KRieLQ~lkq~~K-L~~IL~~Qm 528 (529)
.+-|+-..|+ +||+.+...+++|+-..+.++ |..+|+.|.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666 888888888888876655554 777777773
No 8
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=16.61 E-value=1.2e+02 Score=20.31 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 009652 493 AWIASSRLRESVRTKRTELQLLKQN 517 (529)
Q Consensus 493 aW~~is~Lr~sV~~KRieLQ~lkq~ 517 (529)
+..+|.+|++.|. |.++-.+||||
T Consensus 2 vlrtitnlqkkir-kelkqrqlkqe 25 (26)
T 1m46_B 2 VLRTITNLQKKIR-KELKQRQLKQE 25 (26)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhcc
Confidence 4567888877653 33444444444
No 9
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=16.17 E-value=4e+02 Score=20.83 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009652 490 LYNAWIASSRLRESVRTKRTELQLLK 515 (529)
Q Consensus 490 L~~aW~~is~Lr~sV~~KRieLQ~lk 515 (529)
|-.+-..|.+||.-|....|||+-+|
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55566678888888888888888775
No 10
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=16.15 E-value=4e+02 Score=22.41 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 009652 478 ALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNL 518 (529)
Q Consensus 478 ~~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~ 518 (529)
-|-+.+.+-|+.|-+.=..|+.|+.-+..|--++++|+-++
T Consensus 37 elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 37 ELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46678999999999999999999999999999999998765
Done!