Query 009652
Match_columns 529
No_of_seqs 101 out of 116
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 10:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009652.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009652hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omwa1 a.91.1.1 (A:29-185) G- 15.3 19 0.0014 29.9 0.6 12 460-471 141-152 (157)
2 d1ek9a_ f.5.1.1 (A:) Integral 9.6 4.1E+02 0.03 23.0 8.0 44 474-517 311-354 (428)
3 d1g73a_ a.7.4.1 (A:) Smac/diab 8.7 1.7E+02 0.012 25.1 4.6 50 451-515 48-99 (157)
4 d1orja_ a.24.19.1 (A:) Flagell 7.0 1.4E+02 0.01 23.6 3.2 44 453-499 76-121 (126)
5 d2fug71 d.82.2.2 (7:3-129) NAD 6.0 2.4E+02 0.018 23.2 4.0 22 485-506 2-23 (127)
6 d1ab4a_ e.11.1.1 (A:) DNA Gyra 5.1 3.6E+02 0.026 26.0 5.5 25 496-520 324-348 (493)
7 d2ddha2 a.29.3.2 (A:475-655) P 4.8 5.7E+02 0.042 20.9 6.0 36 464-499 11-47 (181)
8 d2euca1 a.249.1.1 (A:1-113) Hy 4.6 2.9E+02 0.021 22.2 3.5 21 486-508 6-26 (113)
9 d2al3a1 d.15.1.2 (A:10-85) Tet 4.5 79 0.0058 24.2 -0.0 8 465-472 53-60 (76)
10 d1z6oa1 a.25.1.1 (A:13-212) (A 4.5 4.6E+02 0.033 22.0 5.2 15 464-478 149-163 (200)
No 1
>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.34 E-value=19 Score=29.94 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=9.6
Q ss_pred hhhccchhhHHH
Q 009652 460 LFHNRLLQWRFV 471 (529)
Q Consensus 460 LLhNR~LQWRFa 471 (529)
.+|+|||||...
T Consensus 141 ~~y~r~LQwK~l 152 (157)
T d1omwa1 141 DKFTRFCQWKNV 152 (157)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhHHhh
Confidence 468999999754
No 2
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=9.56 E-value=4.1e+02 Score=22.98 Aligned_cols=44 Identities=7% Similarity=0.084 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009652 474 RANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQN 517 (529)
Q Consensus 474 RAea~~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~ 517 (529)
+++..+...+..++..+..+|..+..+++.+...+-.++..++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~ 354 (428)
T d1ek9a_ 311 GASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSS 354 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566666666666666666665555444444443
No 3
>d1g73a_ a.7.4.1 (A:) Smac/diablo {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.73 E-value=1.7e+02 Score=25.11 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=31.1
Q ss_pred cchhhhhhhhhhccchhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009652 451 RVVDAHLLRLFHNRLLQW--RFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLK 515 (529)
Q Consensus 451 ~~Ed~HqLRLLhNR~LQW--RFaNARAea~~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lk 515 (529)
+...+|.|==||-+|.+. .+.-..-|+ +|.-|-+.|.-|..+|-|++++.
T Consensus 48 Y~kav~tl~sL~k~y~a~lgk~~~~eed~---------------vWqvII~~R~ev~~~~~e~~~lE 99 (157)
T d1g73a_ 48 YTKAVYTLTSLYRQYTSLLGKMNSEEEDE---------------VWQVIIGARAEMTSKHQEYLKLE 99 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCTHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCchhHhH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887765 322222111 67777777777777766666553
No 4
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=7.04 E-value=1.4e+02 Score=23.62 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=23.6
Q ss_pred hhhhhhhhhhccchhhHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009652 453 VDAHLLRLFHNRLLQWRFVNAR--ANAALSAQRLNAERSLYNAWIASSR 499 (529)
Q Consensus 453 Ed~HqLRLLhNR~LQWRFaNAR--Aea~~~~Qk~~AE~~L~~aW~~is~ 499 (529)
|-+-+|.=||. |+..+.+.|. -|..-. -...=..|..+|..|.+
T Consensus 76 eiA~nL~~lY~-~~~~~L~~a~~~~~~i~e--~~~il~~l~eaW~~i~~ 121 (126)
T d1orja_ 76 EIAKNLDTIYT-IILNTLVKVDKTKEELQK--ILEILKDLREAWEEVKK 121 (126)
T ss_dssp HHHHHHHHHHH-HHHHHHHCTTCCHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHhCCHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 55677777775 5566665542 222111 11122467788877653
No 5
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=5.98 E-value=2.4e+02 Score=23.17 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009652 485 NAERSLYNAWIASSRLRESVRT 506 (529)
Q Consensus 485 ~AE~~L~~aW~~is~Lr~sV~~ 506 (529)
+-|+.||.+|..+.+-=..++.
T Consensus 2 ~~d~~lY~aWvell~Wm~e~A~ 23 (127)
T d2fug71 2 SSERELYEAWVELLSWMREYAQ 23 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999998775444443
No 6
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=5.14 E-value=3.6e+02 Score=25.97 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHH
Q 009652 496 ASSRLRESVRTKRTELQLLKQNLKL 520 (529)
Q Consensus 496 ~is~Lr~sV~~KRieLQ~lkq~~KL 520 (529)
...+.|..|..||.+.++.+.+.+|
T Consensus 324 ~f~~~R~e~~~kR~~y~L~kle~rl 348 (493)
T d1ab4a_ 324 AFVRHRREVVTRRTIFELRKARDRA 348 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777766666666555
No 7
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.75 E-value=5.7e+02 Score=20.92 Aligned_cols=36 Identities=22% Similarity=0.107 Sum_probs=23.7
Q ss_pred cchhhHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 009652 464 RLLQWRFVNARANAALSAQRLNA-ERSLYNAWIASSR 499 (529)
Q Consensus 464 R~LQWRFaNARAea~~~~Qk~~A-E~~L~~aW~~is~ 499 (529)
+.++||.+.--.+++...|+..- .+..+.+|....-
T Consensus 11 ~a~~~ra~~lv~~~~~~l~~~~~~g~~~~~AwN~~~~ 47 (181)
T d2ddha2 11 EAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSV 47 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34788887777777776666543 3567888876543
No 8
>d2euca1 a.249.1.1 (A:1-113) Hypothetical protein YfmB {Bacillus subtilis [TaxId: 1423]}
Probab=4.59 E-value=2.9e+02 Score=22.23 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 009652 486 AERSLYNAWIASSRLRESVRTKR 508 (529)
Q Consensus 486 AE~~L~~aW~~is~Lr~sV~~KR 508 (529)
+|.+ ||+|+ ++.|=+-|-.|+
T Consensus 6 pEQq-~NAWi-vSDLVKQiF~r~ 26 (113)
T d2euca1 6 PEQQ-YNAWI-VSDLVKQIFHKR 26 (113)
T ss_dssp HHHH-HHHHH-HHHHHHHHHHHH
T ss_pred HHHH-hhHHH-HHHHHHHHHHhc
Confidence 4555 99997 667666555443
No 9
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.54 E-value=79 Score=24.24 Aligned_cols=8 Identities=75% Similarity=1.431 Sum_probs=6.6
Q ss_pred chhhHHHH
Q 009652 465 LLQWRFVN 472 (529)
Q Consensus 465 ~LQWRFaN 472 (529)
-|+|||.|
T Consensus 53 sl~~R~sg 60 (76)
T d2al3a1 53 SLQWRFAN 60 (76)
T ss_dssp SCBHHHHC
T ss_pred cceeeecC
Confidence 37999987
No 10
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]}
Probab=4.51 E-value=4.6e+02 Score=21.96 Aligned_cols=15 Identities=20% Similarity=0.373 Sum_probs=11.8
Q ss_pred cchhhHHHHHhHHHH
Q 009652 464 RLLQWRFVNARANAA 478 (529)
Q Consensus 464 R~LQWRFaNARAea~ 478 (529)
-||||.|++-+.|..
T Consensus 149 ~fLe~~fi~EQvee~ 163 (200)
T d1z6oa1 149 QYLEEEFIEDHAEKI 163 (200)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999877654
Done!