Query 009653
Match_columns 529
No_of_seqs 175 out of 321
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 15:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 1.1E-37 2.3E-42 260.5 -1.1 78 202-279 1-78 (79)
2 PF14901 Jiv90: Cleavage induc 33.2 18 0.00038 32.5 0.6 18 240-257 26-43 (94)
3 PF14776 UNC-79: Cation-channe 31.1 28 0.00062 39.2 1.8 27 222-248 262-297 (525)
4 PRK00241 nudC NADH pyrophospha 30.3 24 0.00051 35.6 1.0 36 215-251 92-127 (256)
5 PF09297 zf-NADH-PPase: NADH p 28.2 23 0.0005 25.0 0.4 31 220-251 1-31 (32)
6 COG2816 NPY1 NTP pyrophosphohy 21.0 41 0.0009 35.2 0.8 36 215-251 104-139 (279)
7 TIGR03831 YgiT_finger YgiT-typ 18.4 60 0.0013 23.5 0.9 20 230-249 21-40 (46)
8 PRK06424 transcription factor; 17.7 73 0.0016 30.1 1.6 25 232-256 14-39 (144)
9 PF06487 SAP18: Sin3 associate 15.8 44 0.00096 30.8 -0.3 26 220-257 5-30 (120)
10 TIGR00270 conserved hypothetic 15.0 1E+02 0.0022 29.3 1.9 21 231-251 14-34 (154)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=1.1e-37 Score=260.55 Aligned_cols=78 Identities=64% Similarity=1.145 Sum_probs=63.2
Q ss_pred ceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhHhhhhcCCCC
Q 009653 202 LCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQF 279 (529)
Q Consensus 202 ~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFDg~kRSCR~rL~rHn~RRRk~q~ 279 (529)
+||||||++||+.+|+||+||||||.|++||+|+++|.++||||||+|||+|+||||+|||||++|++||+||||+++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=33.25 E-value=18 Score=32.48 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=14.6
Q ss_pred eehhhhhhcccccccccc
Q 009653 240 EQRFCQQCSRFHLLAEFD 257 (529)
Q Consensus 240 ~qRFCQQCsRFH~L~eFD 257 (529)
.-|+||+|..+|+..+=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 459999999999876544
No 3
>PF14776 UNC-79: Cation-channel complex subunit UNC-79
Probab=31.11 E-value=28 Score=39.17 Aligned_cols=27 Identities=33% Similarity=0.647 Sum_probs=20.6
Q ss_pred cCccccccCCCeEEE---------CCeeehhhhhhc
Q 009653 222 HKVCDVHSKTPKVIV---------NGNEQRFCQQCS 248 (529)
Q Consensus 222 hrVCe~HskA~~V~v---------~G~~qRFCQQCs 248 (529)
.|-|..+.|..+|+- ++++.|+||||.
T Consensus 262 nK~C~S~~k~AvvtCFS~eCt~~~gn~PiRlC~~Ch 297 (525)
T PF14776_consen 262 NKNCRSSDKSAVVTCFSTECTSYNGNRPIRLCQQCH 297 (525)
T ss_pred CCCCcCCCCCeEEEEechhhccccCCCcchhHHHHh
Confidence 456666777777653 778999999997
No 4
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=30.28 E-value=24 Score=35.63 Aligned_cols=36 Identities=11% Similarity=0.328 Sum_probs=28.1
Q ss_pred CcchhcccCccccccCCCeEEECCeeehhhhhhcccc
Q 009653 215 SKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFH 251 (529)
Q Consensus 215 ~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH 251 (529)
+-.+|++||-|..+-....+ ..+...|.|..|++.|
T Consensus 92 l~~w~~~~~fC~~CG~~~~~-~~~~~~~~C~~c~~~~ 127 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHP-SKTEWAMLCPHCRERY 127 (256)
T ss_pred HHHHhhcCccccccCCCCee-cCCceeEECCCCCCEE
Confidence 34799999999998876554 4566678999999655
No 5
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=28.22 E-value=23 Score=25.04 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=18.2
Q ss_pred cccCccccccCCCeEEECCeeehhhhhhcccc
Q 009653 220 KRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFH 251 (529)
Q Consensus 220 rRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH 251 (529)
++||-|... -+|++.+.+...|-|+.|+..|
T Consensus 1 ~~~rfC~~C-G~~t~~~~~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 1 RNHRFCGRC-GAPTKPAPGGWARRCPSCGHEH 31 (32)
T ss_dssp HTTSB-TTT---BEEE-SSSS-EEESSSS-EE
T ss_pred CCCcccCcC-CccccCCCCcCEeECCCCcCEe
Confidence 356777654 5677777788888899888644
No 6
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=20.97 E-value=41 Score=35.17 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=29.6
Q ss_pred CcchhcccCccccccCCCeEEECCeeehhhhhhcccc
Q 009653 215 SKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFH 251 (529)
Q Consensus 215 ~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH 251 (529)
+-.+|++||.|..+ -+++...+|...|-|++|+.-|
T Consensus 104 l~~w~~~~RFCg~C-G~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 104 LLEWYRSHRFCGRC-GTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHHhhCcCCCCC-CCcCccccCceeeeCCCCCCcc
Confidence 34689999999864 6778888999999999998544
No 7
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=18.37 E-value=60 Score=23.46 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=17.2
Q ss_pred CCCeEEECCeeehhhhhhcc
Q 009653 230 KTPKVIVNGNEQRFCQQCSR 249 (529)
Q Consensus 230 kA~~V~v~G~~qRFCQQCsR 249 (529)
+...+++.+.+.++|.+|+.
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE 40 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGE 40 (46)
T ss_pred CCEEEEEeCCCccccccCCC
Confidence 55678899999999999984
No 8
>PRK06424 transcription factor; Provisional
Probab=17.67 E-value=73 Score=30.09 Aligned_cols=25 Identities=28% Similarity=0.711 Sum_probs=20.2
Q ss_pred CeEEECCeeehhhhhhcccc-ccccc
Q 009653 232 PKVIVNGNEQRFCQQCSRFH-LLAEF 256 (529)
Q Consensus 232 ~~V~v~G~~qRFCQQCsRFH-~L~eF 256 (529)
-.|+|+|.+.+-|..|.+|= ++..+
T Consensus 14 ~~v~ieg~~l~vC~~Ca~~G~~v~~~ 39 (144)
T PRK06424 14 TKVMIDGAILNVCDDCAKFGTPVIEH 39 (144)
T ss_pred eEEEEcCeeeehhHHHHHcCCccccc
Confidence 46889999999999999994 34444
No 9
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=15.84 E-value=44 Score=30.81 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=15.2
Q ss_pred cccCccccccCCCeEEECCeeehhhhhhcccccccccc
Q 009653 220 KRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD 257 (529)
Q Consensus 220 rRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFD 257 (529)
-|.++|+.+.+ -||.+ ++||.++||.
T Consensus 5 dRektcPfLLR-----------vF~~~-g~~h~~~dF~ 30 (120)
T PF06487_consen 5 DREKTCPFLLR-----------VFYRN-GRHHRLDDFS 30 (120)
T ss_dssp -CCCS--EEEE-----------EEESS-SS---GGGCG
T ss_pred ccCCCCCeEEE-----------EEEec-CCCCCHHHcc
Confidence 37788887543 47766 9999999998
No 10
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=15.05 E-value=1e+02 Score=29.29 Aligned_cols=21 Identities=29% Similarity=0.798 Sum_probs=18.5
Q ss_pred CCeEEECCeeehhhhhhcccc
Q 009653 231 TPKVIVNGNEQRFCQQCSRFH 251 (529)
Q Consensus 231 A~~V~v~G~~qRFCQQCsRFH 251 (529)
.-.|.|+|-+..-|..|.+|=
T Consensus 14 ~~~v~iega~l~vC~~C~k~G 34 (154)
T TIGR00270 14 GFKIVIEGSEMTVCGECRKFG 34 (154)
T ss_pred CeEEEEcCeEEehhhhHHhcC
Confidence 347889999999999999983
Done!