Query 009653
Match_columns 529
No_of_seqs 175 out of 321
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 10:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 6.7E-41 2.3E-45 286.3 -0.3 88 196-283 4-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 8.5E-40 2.9E-44 276.7 -0.8 83 199-281 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1E-30 3.5E-35 207.8 2.3 59 199-257 2-60 (60)
4 2d8r_A THAP domain-containing 27.3 23 0.0008 29.3 1.5 14 199-212 8-21 (99)
5 2lau_A THAP domain-containing 19.7 49 0.0017 26.1 2.0 11 200-210 4-14 (81)
6 1vk6_A NADH pyrophosphatase; 1 19.4 28 0.00097 33.6 0.6 35 216-251 101-135 (269)
7 2jm3_A Hypothetical protein; z 12.1 1.4E+02 0.0047 24.8 2.9 9 201-209 5-13 (91)
8 1gh9_A 8.3 kDa protein (gene M 10.4 98 0.0033 25.2 1.3 27 224-253 6-32 (71)
9 4a6q_A Histone deacetylase com 9.8 58 0.002 29.9 -0.2 28 219-257 20-47 (143)
10 2dt7_A Splicing factor 3A subu 8.4 41 0.0014 24.4 -1.4 13 211-223 18-30 (38)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=6.7e-41 Score=286.29 Aligned_cols=88 Identities=59% Similarity=1.006 Sum_probs=80.4
Q ss_pred CCCCCCceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhHhhhhc
Q 009653 196 SCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRR 275 (529)
Q Consensus 196 ~~~~~~~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFDg~kRSCR~rL~rHn~RRR 275 (529)
.+++.++|||+||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+|||
T Consensus 4 ~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRR 83 (94)
T 1ul4_A 4 GSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRR 83 (94)
T ss_dssp ----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCC
T ss_pred CCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 009653 276 KPQFNIHS 283 (529)
Q Consensus 276 k~q~~~~~ 283 (529)
|+++++..
T Consensus 84 k~~~~~~~ 91 (94)
T 1ul4_A 84 KSSGESGP 91 (94)
T ss_dssp SCCCC---
T ss_pred cCCCCcCC
Confidence 99998753
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=8.5e-40 Score=276.70 Aligned_cols=83 Identities=46% Similarity=0.943 Sum_probs=79.0
Q ss_pred CCCceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccccchhHHHHHHhhHhhhhcCCC
Q 009653 199 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQ 278 (529)
Q Consensus 199 ~~~~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFDg~kRSCR~rL~rHn~RRRk~q 278 (529)
+.++|||+||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCC
Q 009653 279 FNI 281 (529)
Q Consensus 279 ~~~ 281 (529)
.+.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 664
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.96 E-value=1e-30 Score=207.84 Aligned_cols=59 Identities=61% Similarity=1.111 Sum_probs=57.2
Q ss_pred CCCceeeCCCchhccCCcchhcccCccccccCCCeEEECCeeehhhhhhcccccccccc
Q 009653 199 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD 257 (529)
Q Consensus 199 ~~~~CQV~GC~~dLs~~k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFD 257 (529)
+.++|||+||++||+.+|+|||||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=27.33 E-value=23 Score=29.34 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=10.3
Q ss_pred CCCceeeCCCchhc
Q 009653 199 QTPLCQVYGCNKDL 212 (529)
Q Consensus 199 ~~~~CQV~GC~~dL 212 (529)
....|-|.||...-
T Consensus 8 M~~~C~v~gC~n~~ 21 (99)
T 2d8r_A 8 MPTNCAAAGCATTY 21 (99)
T ss_dssp CCCCCCSSSCCCSC
T ss_pred CCCeeEeCCCCCCC
Confidence 44579999998653
No 5
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=19.74 E-value=49 Score=26.08 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=7.5
Q ss_pred CCceeeCCCch
Q 009653 200 TPLCQVYGCNK 210 (529)
Q Consensus 200 ~~~CQV~GC~~ 210 (529)
...|-|.||..
T Consensus 4 G~~C~v~gC~n 14 (81)
T 2lau_A 4 GFTCCVPGCYN 14 (81)
T ss_dssp CCSCCCSSSSS
T ss_pred CCEEEeCCCcC
Confidence 34688888864
No 6
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=19.41 E-value=28 Score=33.59 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=27.8
Q ss_pred cchhcccCccccccCCCeEEECCeeehhhhhhcccc
Q 009653 216 KDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFH 251 (529)
Q Consensus 216 k~YhrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH 251 (529)
..++++++-|..+- ++.+..++...+.|..|+..|
T Consensus 101 ~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 101 AEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp HHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEE
T ss_pred HhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEe
Confidence 46889999998865 455667888899999998654
No 7
>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans}
Probab=12.06 E-value=1.4e+02 Score=24.80 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=6.2
Q ss_pred CceeeCCCc
Q 009653 201 PLCQVYGCN 209 (529)
Q Consensus 201 ~~CQV~GC~ 209 (529)
..|-|.||.
T Consensus 5 ~~C~V~gC~ 13 (91)
T 2jm3_A 5 TTCGFPNCK 13 (91)
T ss_dssp CCCCCTTCC
T ss_pred CeEEeCCCc
Confidence 367777774
No 8
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=10.35 E-value=98 Score=25.15 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=20.6
Q ss_pred ccccccCCCeEEECCeeehhhhhhcccccc
Q 009653 224 VCDVHSKTPKVIVNGNEQRFCQQCSRFHLL 253 (529)
Q Consensus 224 VCe~HskA~~V~v~G~~qRFCQQCsRFH~L 253 (529)
.|+ ..+..++-+|....-|+ ||+-|.+
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeee
Confidence 477 55567788899999998 9976554
No 9
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=9.77 E-value=58 Score=29.88 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=22.8
Q ss_pred hcccCccccccCCCeEEECCeeehhhhhhcccccccccc
Q 009653 219 HKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD 257 (529)
Q Consensus 219 hrRhrVCe~HskA~~V~v~G~~qRFCQQCsRFH~L~eFD 257 (529)
--|.++|+.+.+ -||.+=++||.++||.
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~ 47 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFS 47 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGC
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHcc
Confidence 358899998754 4887767999999997
No 10
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.40 E-value=41 Score=24.42 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=8.5
Q ss_pred hccCCcchhcccC
Q 009653 211 DLSSSKDYHKRHK 223 (529)
Q Consensus 211 dLs~~k~YhrRhr 223 (529)
.|..+|+||+||-
T Consensus 18 rlk~Ike~Hrr~P 30 (38)
T 2dt7_A 18 RLKQIKEFHRKHP 30 (38)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCC
Confidence 3555677777764
Done!