BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009655
(529 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q57837|Y392_METJA Zinc metalloprotease MJ0392 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0392 PE=1 SV=1
Length = 339
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 45/172 (26%)
Query: 279 LNLLTNGLPGALVTALV---IGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIR 335
L+++ N + A++ L+ + +HELGH AK GV++ +P IG + +I
Sbjct: 31 LSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP---IGGVAMMDKI- 86
Query: 336 NIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAK 395
+E L++ AGPL F +G VL +V F
Sbjct: 87 ----PKEGELRIGIAGPLVSFIIGIVLLIVSQFF-------------------------- 116
Query: 396 LLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 447
D+ +G P+ ++ G N IPA +DGGRI A+ +K
Sbjct: 117 ----DININGYPLLYTLSLLNLMLG----GFNLIPAFPMDGGRILRAILSKK 160
>sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767
/ JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2
Length = 1616
Score = 35.8 bits (81), Expect = 0.97, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 67 TQTEPDSNNDKEKEVHDGQ--ENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADT 124
T+ E DSN+D + DG +++ + +D+ED+ P S D P+++ + N +DV
Sbjct: 705 TEDEEDSNDDVSAD-SDGNVSDDENMSTTDEEDEPKTPKSSED--PKMDEKENESDV--- 758
Query: 125 KGGVQDDGNGEVASGSPLP 143
++++ NG PLP
Sbjct: 759 ---LEEEVNGSKVRDVPLP 774
>sp|P87294|TCP4_SCHPO Putative RNA polymerase II transcriptional coactivator
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16A10.02 PE=1 SV=1
Length = 136
Score = 35.0 bits (79), Expect = 1.4, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 55 RKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 114
+K ++LI V D+ DS +D E E+ + EN + +D++D ++ +++ D VEN
Sbjct: 78 KKLKQLIHEVDDSLGLVDSGSDSEDEIKEKAENNASLKNDEDDLNTKTENKTDDS-SVEN 136
>sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MLH1 PE=1 SV=2
Length = 769
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 109 QPQVENQINGNDVADTKGGVQDDGNGEVAS-----GSPLPGVKQLDEYIRIPKETIDI 161
QP+ N IN ND+ D Q G+ +V S + LP K D YIR+PKE +++
Sbjct: 454 QPRDANTINDNDLKDQPKKKQKLGDYKVPSIADDEKNALPISK--DGYIRVPKERVNV 509
>sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus (strain
98TXSF-110-ENT) GN=1a PE=3 SV=1
Length = 4383
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 88 QPATASDQEDDKSQPDSQLDSQP-------QVENQINGNDVADTKGGVQDDGNG--EVAS 138
+P AS+QE+ + LD P QVE + +D AD + +QD N E +
Sbjct: 994 EPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYT 1053
Query: 139 GSPLPGVKQLDEYIRIPKET 158
P VK LD Y +PK T
Sbjct: 1054 TEP-EFVKVLDLY--VPKAT 1070
>sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus (strain
98TXSF-110-LUN) GN=1a PE=3 SV=1
Length = 4383
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 88 QPATASDQEDDKSQPDSQLDSQP-------QVENQINGNDVADTKGGVQDDGNG--EVAS 138
+P AS+QE+ + LD P QVE + +D AD + +QD N E +
Sbjct: 994 EPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYT 1053
Query: 139 GSPLPGVKQLDEYIRIPKET 158
P VK LD Y +PK T
Sbjct: 1054 TEP-EFVKVLDLY--VPKAT 1070
>sp|Q9PNM6|Y1068_CAMJE Putative zinc metalloprotease Cj1068 OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=Cj1068 PE=3
SV=1
Length = 368
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 286 LPGALVTALVIGVHELGHILAAKSTGVELGV 316
L LV + +I HELGH LAA+S GV++ V
Sbjct: 23 LATVLVISFLIFFHELGHFLAARSLGVKVEV 53
>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain
98TXSF-110-ENT) GN=rep PE=3 SV=1
Length = 7094
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 88 QPATASDQEDDKSQPDSQLDSQP-------QVENQINGNDVADTKGGVQDDGNGEVASGS 140
+P AS+QE+ + LD P QVE + +D AD + +QD N +
Sbjct: 994 EPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYT 1053
Query: 141 PLPG-VKQLDEYIRIPKET 158
P VK LD Y +PK T
Sbjct: 1054 TEPEFVKVLDLY--VPKAT 1070
>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain
98TXSF-110-LUN) GN=rep PE=3 SV=1
Length = 7094
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 88 QPATASDQEDDKSQPDSQLDSQP-------QVENQINGNDVADTKGGVQDDGNGEVASGS 140
+P AS+QE+ + LD P QVE + +D AD + +QD N +
Sbjct: 994 EPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVEMSDFADLESVIQDYENVCFEFYT 1053
Query: 141 PLPG-VKQLDEYIRIPKET 158
P VK LD Y +PK T
Sbjct: 1054 TEPEFVKVLDLY--VPKAT 1070
>sp|Q9PKW7|Y344_CHLMU Putative zinc metalloprotease TC_0344 OS=Chlamydia muridarum
(strain MoPn / Nigg) GN=TC_0344 PE=3 SV=1
Length = 619
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 54/133 (40%), Gaps = 42/133 (31%)
Query: 288 GALVTALVIGVHELGHILAAKSTG--VELGVPYFVPS----------WQIGS--FGAITR 333
AL +I +HELGH+LAAK+ G VE F P+ ++IG+ FG R
Sbjct: 9 AALALGFLILIHELGHLLAAKAVGMTVESFSIGFGPALVRKKMGSIEYRIGAIPFGGYVR 68
Query: 334 I----RNIVSKREDLLK-------------------VAAAGPLAG-----FSLGFVLFLV 365
I RN ED K V AAGPLA F+ G + F
Sbjct: 69 IKGMDRNDKEISEDREKTVYDIPGGFFSKSPWKRIFVLAAGPLANILVALFAFGILYFSG 128
Query: 366 GFIFPPSDGIGIV 378
G P S+ IV
Sbjct: 129 GRTKPFSEHTSIV 141
>sp|A3LW86|M28P1_PICST Probable zinc metalloprotease PICST_46351 (Fragment)
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PICST_46351 PE=3
SV=2
Length = 937
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 27/149 (18%)
Query: 106 LDSQPQVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKQLDEYIRIPKETIDILKDQ 165
L P V++ T+ G+QD +PG K D+Y++ +DILK+
Sbjct: 705 LSDIPSVKDSKGAVACVPTRDGLQDCSYKSSLDPKLVPGAKSFDDYLK-----VDILKNS 759
Query: 166 VFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDK 225
D Y G+L G +R + K E + + K + K +V+P D
Sbjct: 760 SSNVD---------YPFGLL-TGEIRIRVPKNRECV---LDFKPSESTK---IVSPFKDS 803
Query: 226 PVAVVVPRK------TLQPETTAVPEWFA 248
PV V+ K T + E ++PE F+
Sbjct: 804 PVKTVIVYKGKKSATTKEVEAESIPEGFS 832
>sp|O84075|Y072_CHLTR Putative zinc metalloprotease CT_072 OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=CT_072 PE=3 SV=1
Length = 619
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 288 GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR 333
AL +I +HELGH+LAAK+ G+ V S+ IG A+ R
Sbjct: 9 AALALGFLILIHELGHLLAAKAVGMS------VESFSIGFGPALVR 48
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,179,918
Number of Sequences: 539616
Number of extensions: 9415594
Number of successful extensions: 29933
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 29269
Number of HSP's gapped (non-prelim): 629
length of query: 529
length of database: 191,569,459
effective HSP length: 122
effective length of query: 407
effective length of database: 125,736,307
effective search space: 51174676949
effective search space used: 51174676949
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)