Query 009655
Match_columns 529
No_of_seqs 328 out of 1287
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:04:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b4r_A Putative zinc metallopr 99.9 2.3E-24 7.8E-29 210.1 13.9 154 287-482 42-205 (224)
2 2di4_A Zinc protease, cell div 58.2 5.9 0.0002 38.8 3.2 28 295-322 18-47 (238)
3 3cqb_A Probable protease HTPX 52.8 6.1 0.00021 33.6 2.0 12 294-305 84-95 (107)
4 2jsd_A Matrix metalloproteinas 49.8 7.4 0.00025 34.8 2.2 22 294-315 109-130 (160)
5 2xs4_A Karilysin protease; hyd 49.1 7.7 0.00026 35.1 2.2 22 294-315 116-137 (167)
6 2ovx_A Matrix metalloproteinas 47.3 7.1 0.00024 35.3 1.7 22 294-315 112-133 (159)
7 1hy7_A Stromelysin-1, MMP-3; m 46.2 9 0.00031 35.0 2.2 22 294-315 114-135 (173)
8 1cge_A Fibroblast collagenase; 42.8 9.1 0.00031 34.8 1.7 22 294-315 112-133 (168)
9 1hv5_A Stromelysin 3; inhibiti 38.6 12 0.0004 33.9 1.7 22 294-315 114-135 (165)
10 1i76_A MMP-8;, neutrophil coll 38.0 14 0.00049 33.4 2.2 22 294-315 113-134 (163)
11 1slm_A Stromelysin-1; hydrolas 34.1 15 0.0005 36.1 1.7 21 294-314 196-216 (255)
12 2y6d_A Matrilysin; hydrolase; 31.8 21 0.00071 32.8 2.2 22 294-315 116-137 (174)
13 1y93_A Macrophage metalloelast 31.6 18 0.00061 32.7 1.7 20 294-313 109-128 (159)
14 3ayu_A 72 kDa type IV collagen 31.1 18 0.00062 32.9 1.7 21 294-314 115-135 (167)
15 1rm8_A MMP-16, matrix metallop 31.0 22 0.00075 32.2 2.2 22 294-315 118-139 (169)
16 2w15_A Zinc metalloproteinase 30.9 18 0.00063 33.5 1.7 17 293-309 136-152 (202)
17 3c37_A Peptidase, M48 family; 30.3 21 0.00071 34.5 2.0 12 294-305 101-112 (253)
18 1c7k_A NCNP, zinc endoprotease 30.0 24 0.00082 31.7 2.2 11 295-305 79-89 (132)
19 2cki_A Ulilysin; metalloprotea 27.9 17 0.00059 35.9 1.0 12 294-305 163-174 (262)
20 1atl_A Atrolysin C; metalloend 27.4 24 0.00083 32.7 1.9 18 293-310 136-153 (202)
21 1bud_A Protein (acutolysin A); 27.1 23 0.0008 32.6 1.7 18 293-310 133-150 (197)
22 2ddf_A ADAM 17; hydrolase; HET 26.5 25 0.00086 33.6 1.9 18 293-310 182-199 (257)
23 1qua_A Acutolysin-C, hemorrhag 26.5 24 0.00083 32.5 1.7 17 293-309 135-151 (197)
24 1kuf_A Atrolysin E, metallopro 26.1 25 0.00085 32.7 1.7 17 293-309 138-154 (203)
25 1yp1_A FII; FII hydrolase; 1.9 26.0 25 0.00086 32.6 1.7 17 293-309 135-151 (202)
26 3b8z_A Protein adamts-5; alpha 25.4 26 0.00089 32.7 1.7 17 293-309 141-157 (217)
27 830c_A MMP-13, MMP-13; matrix 25.0 27 0.00092 32.0 1.7 22 294-315 114-135 (168)
28 2v4b_A Adamts-1; zymogen, prot 23.9 28 0.00096 34.2 1.7 18 293-310 143-160 (300)
29 3ma2_D Matrix metalloproteinas 23.5 30 0.001 32.2 1.7 22 294-315 123-144 (181)
30 2rjp_A Adamts-4; metalloprotea 22.7 31 0.001 34.3 1.7 18 293-310 143-160 (316)
31 2isb_A Fumarase, FUM-1; NP_069 22.7 65 0.0022 30.8 3.8 60 151-233 20-79 (192)
32 2ko4_A Mediator of RNA polymer 22.6 24 0.00082 29.5 0.7 27 142-169 33-65 (81)
33 2rjq_A Adamts-5; metalloprotea 22.2 31 0.0011 35.0 1.7 18 293-310 143-160 (378)
34 4dd8_A Disintegrin and metallo 22.1 39 0.0013 31.4 2.2 17 293-309 133-149 (208)
35 2ero_A VAP-1, vascular apoptos 21.8 38 0.0013 35.4 2.2 21 292-312 145-165 (427)
36 1sat_A Serratia protease; para 21.7 36 0.0012 36.2 2.0 21 294-314 171-191 (471)
37 1g9k_A Serralysin; beta jelly 20.9 40 0.0014 35.8 2.2 20 294-313 164-183 (463)
38 2i47_A ADAM 17; TACE-inhibitor 20.4 39 0.0013 33.0 1.9 18 293-310 188-205 (288)
39 1r55_A ADAM 33; metalloproteas 20.3 38 0.0013 31.7 1.7 17 293-309 136-152 (214)
40 1kap_P Alkaline protease; calc 20.3 42 0.0014 35.8 2.2 20 295-314 181-200 (479)
41 2dw0_A Catrocollastatin; apopt 20.1 43 0.0015 34.9 2.2 19 293-311 137-155 (419)
42 1k7i_A PROC, secreted protease 20.1 40 0.0014 35.9 2.0 21 294-314 183-203 (479)
No 1
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=2.3e-24 Score=210.06 Aligned_cols=154 Identities=26% Similarity=0.389 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeeeeeEEeeccccCCcccceeeEecchhhHHHHHHHHHHHH
Q 009655 287 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG 366 (529)
Q Consensus 287 p~aL~L~~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LGtFGAvi~~~s~~~~RkalfdIAiAGPLAg~llAl~ll~iG 366 (529)
.++++++.++++||+||+++||++|+++.. +.+.+||+++++++. .|+++++|++|||++|++++++++.+.
T Consensus 42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~------i~l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~~~~~~ 113 (224)
T 3b4r_A 42 VLFILLFVSVVLHELGHSYVAKKYGVKIEK------ILLLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIVLLIVS 113 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------EEECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccc------EEEEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999984 455568999988763 358999999999999999998876654
Q ss_pred hhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhh
Q 009655 367 FIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR 446 (529)
Q Consensus 367 l~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPLa~agwinLvltafNLLPigpLDGGrIlrAllgr 446 (529)
...+.. . .. ...+.+++|+|+++++|||+|++|||||||+++++++
T Consensus 114 ~~~~~~-------------~--------------------~~-~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~ 159 (224)
T 3b4r_A 114 QFFDIN-------------I--------------------NG-YPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSK 159 (224)
T ss_dssp TTCCCE-------------E--------------------TT-EEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred HHccCc-------------c--------------------hH-HHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence 322100 0 00 1123457999999999999999999999999999887
Q ss_pred hHH--------HHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHh
Q 009655 447 KAS--------TRLTGVSIVLLGLSSLF--SDVTFYWVVLVFFLQR 482 (529)
Q Consensus 447 r~a--------~~i~~~~~~lLGl~~l~--~~~~l~W~llilfl~r 482 (529)
+.. .+++.++.+++.+.++. +.+..+|++++++..+
T Consensus 160 ~~~~~~a~~~~~~~g~~i~~~l~~~g~~~~~~~l~~i~~fl~~~a~ 205 (224)
T 3b4r_A 160 KYGYLKSTKIAANIGKSLALIMLLFGLLSMNIILILVSLFVYFGAE 205 (224)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 542 22344444444444443 2223445555544443
No 2
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=58.19 E-value=5.9 Score=38.80 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHcC--Ccccccccccc
Q 009655 295 VIGVHELGHILAAKSTG--VELGVPYFVPS 322 (529)
Q Consensus 295 iL~iHElGH~laAr~~G--vk~s~P~FIP~ 322 (529)
++..||.||+++|...+ .++..-..||.
T Consensus 18 ~vAyHEAGHAlva~~l~~~~pV~KVTIiPR 47 (238)
T 2di4_A 18 KIAIHEAGHALMGLVSDDDDKVHKISIIPR 47 (238)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCCCCEECC--
T ss_pred HHHHHHHHHHHHHHHcCCCCceeEEEEeec
Confidence 56789999999999987 55553334564
No 3
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=52.75 E-value=6.1 Score=33.56 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH
Q 009655 294 LVIGVHELGHIL 305 (529)
Q Consensus 294 ~iL~iHElGH~l 305 (529)
..++.||+||+.
T Consensus 84 ~aVlaHElgH~~ 95 (107)
T 3cqb_A 84 EAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899999974
No 4
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=49.83 E-value=7.4 Score=34.76 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+++||+||++=-.+-..+.+
T Consensus 109 ~~v~~HEiGHaLGL~H~~~~~s 130 (160)
T 2jsd_A 109 FTVAAHEFGHALGLAHSTDPSA 130 (160)
T ss_dssp HHHHHHHHHHHHTCCCCCCTTC
T ss_pred HHHHHHHhHhhhcCCCCCCCCc
Confidence 4678999999987665555444
No 5
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=49.10 E-value=7.7 Score=35.10 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+++||+||++=-.+-..+.+
T Consensus 116 ~~v~~HEiGHaLGL~H~~~~~s 137 (167)
T 2xs4_A 116 ITVAAHEIGHLLGIEHSNVSSA 137 (167)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred hhhHHHHHHHhhcCCCCCCCCc
Confidence 4688999999987655554443
No 6
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=47.35 E-value=7.1 Score=35.28 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+++||+||++=-.+-..+-+
T Consensus 112 ~~va~HEiGHaLGL~Hs~~~~~ 133 (159)
T 2ovx_A 112 FLVAAHQFGHALGLDHSSVPEA 133 (159)
T ss_dssp HHHHHHHHHHHTTCCCCSCTTS
T ss_pred hhhhhhhhhhhhcCCCCCCCcc
Confidence 4688999999986655554443
No 7
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=46.17 E-value=9 Score=34.95 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+++||+||++=-.+-..+-+
T Consensus 114 ~~v~~HEiGHaLGL~H~~~~~s 135 (173)
T 1hy7_A 114 FLVAAHEIGHSLGLFHSANTEA 135 (173)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred hhhHHHHHHHhhcCCCCCCCCc
Confidence 4678999999987655554443
No 8
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=42.85 E-value=9.1 Score=34.80 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+++||+||++=-.+-..+.+
T Consensus 112 ~~v~~HEiGHaLGL~H~~~~~s 133 (168)
T 1cge_A 112 HRVAAHELGHSLGLSHSTDIGA 133 (168)
T ss_dssp HHHHHHHHHHHTTCCCCSCTTS
T ss_pred hhhhhhHhHhhhcCCCCCCCCc
Confidence 4678999999986655444443
No 9
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=38.56 E-value=12 Score=33.92 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+++||+||++=-.+-..+.+
T Consensus 114 ~~v~~HEiGHaLGL~H~~~~~s 135 (165)
T 1hv5_A 114 LQVAAHEFGHVLGLQHTTAAKA 135 (165)
T ss_dssp HHHHHHHHHHHTTCCCCSCTTS
T ss_pred hhhHHHHhHhhhCCCCCCCCCc
Confidence 4678999999986655554443
No 10
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=38.01 E-value=14 Score=33.36 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+++||+||.+=-.+...+-+
T Consensus 113 ~~v~~HE~GHalGl~H~~~~~~ 134 (163)
T 1i76_A 113 FLVAAHEFGHSLGLAHSSDPGA 134 (163)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred hhhhHHHhhhhhcCCCCCCCCc
Confidence 4678999999987655554443
No 11
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=34.12 E-value=15 Score=36.06 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009655 294 LVIGVHELGHILAAKSTGVEL 314 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~ 314 (529)
..+++||+||++=-.+-..+-
T Consensus 196 ~~va~HEiGHaLGL~Hs~~~~ 216 (255)
T 1slm_A 196 FLVAAHEIGHSLGLFHSANTE 216 (255)
T ss_dssp HHHHHHHHHHHTTCCCCSCTT
T ss_pred hhhhHHHHHHHhcCCCCCCCC
Confidence 468899999998655444443
No 12
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=31.80 E-value=21 Score=32.76 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+.+||+||.+--.+...+-+
T Consensus 116 ~~~~~HE~gH~lGl~h~~~~~s 137 (174)
T 2y6d_A 116 LYAATHELGHSLGMGHSSDPNA 137 (174)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred eehhhHHhHhhhcCCCCCCCCc
Confidence 4678999999987655544444
No 13
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=31.59 E-value=18 Score=32.67 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009655 294 LVIGVHELGHILAAKSTGVE 313 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk 313 (529)
..+.+||+||.+--.+...+
T Consensus 109 ~~~~~HE~GH~lGl~H~~~~ 128 (159)
T 1y93_A 109 FLTAVHEIGHSLGLGHSSDP 128 (159)
T ss_dssp HHHHHHHHHHHTTCCCCSCT
T ss_pred hhhhhhhhhhhhcCCCCCCC
Confidence 45789999999765544443
No 14
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=31.07 E-value=18 Score=32.91 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009655 294 LVIGVHELGHILAAKSTGVEL 314 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~ 314 (529)
..+++||+||.+--.+...+-
T Consensus 115 ~~~~~HE~gH~lGl~H~~~~~ 135 (167)
T 3ayu_A 115 FLVAAHAFGHAMGLEHSQDPG 135 (167)
T ss_dssp HHHHHHHHHHHTTEECCSCTT
T ss_pred eeehhhhhHHhccCCCCCCCC
Confidence 467899999998655444433
No 15
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=31.02 E-value=22 Score=32.16 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+.+||+||.+--.+...+.+
T Consensus 118 ~~~~~he~gh~lgl~h~~~~~~ 139 (169)
T 1rm8_A 118 FLVAVHELGHALGLEHSNDPTA 139 (169)
T ss_dssp HHHHHHHHHHHHTCCCCSCTTS
T ss_pred eeehhhhhhhhcCCCCCCCCCC
Confidence 3578999999987665554433
No 16
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=30.88 E-value=18 Score=33.47 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009655 293 ALVIGVHELGHILAAKS 309 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~ 309 (529)
++..++||+||-+=+.+
T Consensus 136 ~a~~~AHElGH~lG~~H 152 (202)
T 2w15_A 136 VAVTMAHELGHNLGIHH 152 (202)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhhcCCcc
Confidence 46788999999876554
No 17
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=30.29 E-value=21 Score=34.50 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH
Q 009655 294 LVIGVHELGHIL 305 (529)
Q Consensus 294 ~iL~iHElGH~l 305 (529)
..++.||+||..
T Consensus 101 aaVLaHElgH~~ 112 (253)
T 3c37_A 101 AGVLAHEINHAV 112 (253)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899999984
No 18
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=29.99 E-value=24 Score=31.75 Aligned_cols=11 Identities=45% Similarity=0.851 Sum_probs=9.6
Q ss_pred HHHHHHHHHHH
Q 009655 295 VIGVHELGHIL 305 (529)
Q Consensus 295 iL~iHElGH~l 305 (529)
.+.+||+||.+
T Consensus 79 ~v~aHE~GH~L 89 (132)
T 1c7k_A 79 RVTAHETGHVL 89 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred eEEeeeehhcc
Confidence 47899999986
No 19
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=27.95 E-value=17 Score=35.86 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHH
Q 009655 294 LVIGVHELGHIL 305 (529)
Q Consensus 294 ~iL~iHElGH~l 305 (529)
.-.++||+||++
T Consensus 163 g~TltHEvGH~L 174 (262)
T 2cki_A 163 GRTATHEIGHWL 174 (262)
T ss_dssp SHHHHHHHHHHT
T ss_pred cchhhhhhhhhh
Confidence 357899999986
No 20
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=27.42 E-value=24 Score=32.70 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009655 293 ALVIGVHELGHILAAKST 310 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~~ 310 (529)
++..++||+||-+=+.+-
T Consensus 136 ~a~~~AHElGHnlG~~HD 153 (202)
T 1atl_A 136 MGVTMAHELGHNLGMEHD 153 (202)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred eEEEehhhhccccCceeC
Confidence 356889999998765543
No 21
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=27.14 E-value=23 Score=32.61 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009655 293 ALVIGVHELGHILAAKST 310 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~~ 310 (529)
++..++||+||-+=+.+-
T Consensus 133 ~a~~~AHElGH~lG~~HD 150 (197)
T 1bud_A 133 VAITLAHEMAHNLGVSHD 150 (197)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhhhcCCccC
Confidence 467789999999766553
No 22
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=26.51 E-value=25 Score=33.64 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009655 293 ALVIGVHELGHILAAKST 310 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~~ 310 (529)
.+.+++||+||-+=+.+=
T Consensus 182 ~a~~~AHElGHnlG~~HD 199 (257)
T 2ddf_A 182 ADLVTTHELGHNFGAEHD 199 (257)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred eeeeeeeehhhhcCcccC
Confidence 467889999998766543
No 23
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=26.46 E-value=24 Score=32.48 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009655 293 ALVIGVHELGHILAAKS 309 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~ 309 (529)
.+..++||+||-+=+.+
T Consensus 135 ~a~~~AHElGH~lG~~H 151 (197)
T 1qua_A 135 MAVTMAHELGHNLGMNH 151 (197)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 45778999999865554
No 24
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=26.08 E-value=25 Score=32.69 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009655 293 ALVIGVHELGHILAAKS 309 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~ 309 (529)
.+..++||+||-+=+.+
T Consensus 138 ~a~~~AHElGH~lG~~H 154 (203)
T 1kuf_A 138 VAVTMTHELGHNLGMEH 154 (203)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHhhhhcCCCC
Confidence 46788999999876554
No 25
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=25.99 E-value=25 Score=32.58 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009655 293 ALVIGVHELGHILAAKS 309 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~ 309 (529)
++..++||+||-+=+.+
T Consensus 135 ~a~~~AHElGH~lG~~H 151 (202)
T 1yp1_A 135 MAVVMAHELGHNLGMLH 151 (202)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 35788999999876554
No 26
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=25.38 E-value=26 Score=32.72 Aligned_cols=17 Identities=35% Similarity=0.560 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009655 293 ALVIGVHELGHILAAKS 309 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~ 309 (529)
.+..++||+||-+=+.+
T Consensus 141 ~a~~~AHElGHnlG~~H 157 (217)
T 3b8z_A 141 AAFTVAHEIGHLLGLSH 157 (217)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred hhhhhHhhhhhhcCCcC
Confidence 35688999999876554
No 27
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=25.05 E-value=27 Score=32.04 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+.+||+||.+--.+-..+-+
T Consensus 114 ~~v~~hE~Gh~lGl~h~~~~~a 135 (168)
T 830c_A 114 FLVAAHEFGHSLGLDHSKDPGA 135 (168)
T ss_dssp HHHHHHHHHHHTTBCCCSCTTS
T ss_pred hhhhhhhhcchhcCCCCCCCcc
Confidence 4578999999987655555444
No 28
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=23.92 E-value=28 Score=34.20 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009655 293 ALVIGVHELGHILAAKST 310 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~~ 310 (529)
.+..++||+||-+=+.+=
T Consensus 143 ~a~t~AHElGHnlG~~HD 160 (300)
T 2v4b_A 143 AAFTTAHELGHVFNMPHD 160 (300)
T ss_dssp HHHHHHHHHHHHTTCCCT
T ss_pred ceehhhhhhhhhcCCcCC
Confidence 457889999998766553
No 29
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=23.45 E-value=30 Score=32.20 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009655 294 LVIGVHELGHILAAKSTGVELG 315 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~s 315 (529)
..+.+||+||.+--.+...+-+
T Consensus 123 ~~v~~hE~Gh~lGl~hs~~~~a 144 (181)
T 3ma2_D 123 FLVAVHELGHALGLEHSSDPSA 144 (181)
T ss_dssp HHHHHHHHHHHTTCCCCSCTTS
T ss_pred eeeehhhccccccCCcCCCCcc
Confidence 3588999999965544444433
No 30
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=22.75 E-value=31 Score=34.27 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009655 293 ALVIGVHELGHILAAKST 310 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~~ 310 (529)
++.+++||+||-+=+.+=
T Consensus 143 ~a~t~AHElGHnlGm~HD 160 (316)
T 2rjp_A 143 SAFTAAHQLGHVFNMLHD 160 (316)
T ss_dssp HHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHhhcCccCC
Confidence 457889999998766543
No 31
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=22.70 E-value=65 Score=30.80 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=45.0
Q ss_pred cCCCCHhHHHHhhccccccceeeeccccccCceEEEEeccCCchHHHHHHHHHHHHhhhCCceEEEEEecCCCCCcEEEE
Q 009655 151 YIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVV 230 (529)
Q Consensus 151 ~~~i~~ed~~~ik~~~Fg~dtF~~t~~~~~~~gvi~rGnLR~~~e~~y~~l~~~l~~~fGd~y~lfl~~~~~~~kPv~~v 230 (529)
..|+++||++.+|- ++-|...|.+-.-++.+|+|+.+.|++ |.+. .-...++.++..
T Consensus 20 ~~Plt~e~v~~L~v----------------GD~V~LsG~i~taRDaAHkRl~e~l~~--Ge~l-----P~dl~g~~Iyy~ 76 (192)
T 2isb_A 20 RTPLVKDQILKLKV----------------GDVVYITGEIFTARDEAHARALEWMEE--GKEL-----PFSFDKGVVYHC 76 (192)
T ss_dssp ESSCCHHHHHHCCT----------------TCEEEEEEEEEECCHHHHHHHHHHHHH--TCCC-----SSCCTTCEEECB
T ss_pred CCCCCHHHHhhCCC----------------CCEEEEEEEEEEEhHHHHHHHHHHHHc--CCCC-----CcCCCCCEEEEe
Confidence 45889999999886 677888888889999999999999988 5432 112236666666
Q ss_pred EeC
Q 009655 231 VPR 233 (529)
Q Consensus 231 vP~ 233 (529)
-|.
T Consensus 77 GP~ 79 (192)
T 2isb_A 77 GPL 79 (192)
T ss_dssp CCE
T ss_pred cCC
Confidence 554
No 32
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.62 E-value=24 Score=29.48 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=20.5
Q ss_pred CCCCc------CccccCCCCHhHHHHhhcccccc
Q 009655 142 LPGVK------QLDEYIRIPKETIDILKDQVFGF 169 (529)
Q Consensus 142 ~~~~~------~~~~~~~i~~ed~~~ik~~~Fg~ 169 (529)
+|||+ .+-..-.||++|+++||+ ++..
T Consensus 33 PpgVnTW~qI~el~qkk~i~~~~m~iik~-iy~~ 65 (81)
T 2ko4_A 33 PPNINTWQQVTALAQQKLLTPQDMEAAKE-VYKI 65 (81)
T ss_dssp CTTTCBHHHHHHHHTTTSSCHHHHHHHHH-HHHH
T ss_pred CCCcchHHHHHHHHHcCCCCHHHHHHHHH-HHHH
Confidence 67888 344456899999999999 6543
No 33
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=22.25 E-value=31 Score=35.02 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009655 293 ALVIGVHELGHILAAKST 310 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~~ 310 (529)
++.+++||+||-+=+.+-
T Consensus 143 ~a~~~AHElGHnlGm~HD 160 (378)
T 2rjq_A 143 AAFTVAHEIGHLLGLSHD 160 (378)
T ss_dssp HHHHHHHHHHHHTTCCCT
T ss_pred hhhhhhhhhhhhcCccCC
Confidence 457899999999866553
No 34
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=22.06 E-value=39 Score=31.45 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009655 293 ALVIGVHELGHILAAKS 309 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~ 309 (529)
++..++||+||-+=+.+
T Consensus 133 ~a~~~AHElGH~lG~~H 149 (208)
T 4dd8_A 133 VACTMAHEMGHNLGMDH 149 (208)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCcC
Confidence 35689999999875544
No 35
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=21.80 E-value=38 Score=35.42 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCC
Q 009655 292 TALVIGVHELGHILAAKSTGV 312 (529)
Q Consensus 292 L~~iL~iHElGH~laAr~~Gv 312 (529)
.++.+++||+||-+=+.+-+.
T Consensus 145 ~~a~t~AHElGHnlG~~HD~~ 165 (427)
T 2ero_A 145 LVAIAMAHEMGHNLGMDHDKD 165 (427)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHHHhcCCccCCC
Confidence 345789999999887665443
No 36
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Probab=21.71 E-value=36 Score=36.18 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009655 294 LVIGVHELGHILAAKSTGVEL 314 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~ 314 (529)
..+++||+||++=-.+-+.+-
T Consensus 171 ~~va~HEiGHaLGL~Hs~~~~ 191 (471)
T 1sat_A 171 RQTFTHEIGHALGLSHPGDYN 191 (471)
T ss_dssp HHHHHHHHHHHHTCCCSSCCC
T ss_pred ceeeeeeccccccCCCCCCcc
Confidence 367899999999777666654
No 37
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P
Probab=20.94 E-value=40 Score=35.80 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009655 294 LVIGVHELGHILAAKSTGVE 313 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk 313 (529)
..+++||+||++=-++-+.+
T Consensus 164 ~~va~HEiGHaLGL~Hs~~~ 183 (463)
T 1g9k_A 164 RQTLTHEIGHTLGLSHPGDY 183 (463)
T ss_dssp HHHHHHHHHHHHTCCCSSCC
T ss_pred hhhhhhhhhhhhccCCCCcc
Confidence 36789999999977665543
No 38
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=20.40 E-value=39 Score=32.99 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009655 293 ALVIGVHELGHILAAKST 310 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~~ 310 (529)
.+.+++||+||-+=+.+=
T Consensus 188 ~a~~~AHElGHnlGm~HD 205 (288)
T 2i47_A 188 ADLVTTHELGHNFGAEHD 205 (288)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhhcCCccC
Confidence 567889999998766543
No 39
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=20.34 E-value=38 Score=31.72 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009655 293 ALVIGVHELGHILAAKS 309 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~ 309 (529)
.+..++||+||-+=+.+
T Consensus 136 ~a~~~AHElGHnlG~~H 152 (214)
T 1r55_A 136 AAATMAHEIGHSLGLSH 152 (214)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCcC
Confidence 36788999999876554
No 40
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A
Probab=20.27 E-value=42 Score=35.79 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHcCCcc
Q 009655 295 VIGVHELGHILAAKSTGVEL 314 (529)
Q Consensus 295 iL~iHElGH~laAr~~Gvk~ 314 (529)
.+++||+||++=-++-+.+-
T Consensus 181 ~va~HEIGHaLGL~Hs~~~~ 200 (479)
T 1kap_P 181 QTLTHEIGHTLGLSHPGDYN 200 (479)
T ss_dssp HHHHHHHHHHHTCCCSSSCC
T ss_pred eeehhhhhhhhccCCCCCcc
Confidence 57799999999777655543
No 41
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=20.14 E-value=43 Score=34.94 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 009655 293 ALVIGVHELGHILAAKSTG 311 (529)
Q Consensus 293 ~~iL~iHElGH~laAr~~G 311 (529)
++.+++||+||-+=+.+-+
T Consensus 137 ~a~t~AHElGHnlG~~HD~ 155 (419)
T 2dw0_A 137 VAVIMAHEMGHNLGINHDS 155 (419)
T ss_dssp HHHHHHHHHHHHTTCCCCC
T ss_pred hhhhHHHHHHHHcCCccCC
Confidence 4578899999988766544
No 42
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Probab=20.12 E-value=40 Score=35.89 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009655 294 LVIGVHELGHILAAKSTGVEL 314 (529)
Q Consensus 294 ~iL~iHElGH~laAr~~Gvk~ 314 (529)
..+++||+||++=-.+-+.+-
T Consensus 183 ~~va~HEiGHaLGL~Hs~~~~ 203 (479)
T 1k7i_A 183 RQTFTHEIGHALGLAHPGEYN 203 (479)
T ss_dssp HHHHHHHHHHHHTCCCSSSCC
T ss_pred ccccHHHHHHhhcCCCCCccc
Confidence 467899999999877766654
Done!