BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009657
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 61 CAICLEALSYSSGGS---------PGQAIFTAQCSHAFHFACI----SSNVRHGSVTCPI 107
C IC+E L+ +SG S P +CSHAFH C+ + + GS+ CP
Sbjct: 28 CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87
Query: 108 CR 109
C+
Sbjct: 88 CK 89
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNL 119
+C ICL+ L + + T +C H F CI + +R G+ CP CR R+L
Sbjct: 56 MCPICLDMLKNT--------MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS-KRSL 106
Query: 120 YP 121
P
Sbjct: 107 RP 108
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
+C ICL+ L + T +C H F CI + +R G+ CP CR
Sbjct: 36 MCPICLDMLK--------NTMTTKECLHRFCADCIITALRSGNKECPTCR 77
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 35.0 bits (79), Expect = 0.094, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
CA+CL L +A F +C H FH C+ + S TCP+CR
Sbjct: 8 CAVCLAELEDGE-----EARFLPRCGHGFHAECVDMWLGSHS-TCPLCR 50
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNL 119
+C ICL+ L + T +C H F CI + +R G+ CP CR R+L
Sbjct: 55 MCPICLDMLK--------NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS-KRSL 105
Query: 120 YP 121
P
Sbjct: 106 RP 107
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
C IC++ YS G+ I + +C H F C+ ++++ + TCP CR
Sbjct: 75 CPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 120
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 25/81 (30%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH-------------------- 100
C IC++ YS G+ I + +C H F C+ ++++
Sbjct: 10 CPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 67
Query: 101 ---GSVTCPICRAHWTQLPRN 118
G+V+CPIC ++++ +N
Sbjct: 68 IGSGTVSCPICMDGYSEIVQN 88
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
C IC++ YS G+ I + +C H F C+ ++++ + TCP CR
Sbjct: 6 CPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 51
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
C IC++ YS G+ I + +C H F C+ ++++ + TCP CR
Sbjct: 18 CPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 63
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 16/66 (24%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSN-----VRHGSVTCPICRAHWTQL 115
C ICLE L+ + C H+F AC+++N + G +CP+CR +
Sbjct: 22 CPICLELLTQP---------LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ-- 70
Query: 116 PRNLYP 121
P N+ P
Sbjct: 71 PENIRP 76
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQL 115
N LCA+CLE P + C HAFH C+ + V CP+C QL
Sbjct: 13 NLHELCAVCLEDFK------PRDELGICPCKHAFHRKCLIKWLEVRKV-CPLCNMPVLQL 65
Query: 116 PRNLYPAA 123
+ P++
Sbjct: 66 AQLSGPSS 73
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 14/54 (25%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH-----GSVTCPICR 109
C ICLE L + +A C+H+F ACI+ N G CP+CR
Sbjct: 22 CPICLELL---------KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 83 AQCSHAFHFACISSNVRHGSVTCPICRAHW 112
+C+H+FH C+S V+ + CP+C+ W
Sbjct: 46 GECNHSFHNCCMSLWVKQNN-RCPLCQQDW 74
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 55 ANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRA 110
A C ICLE S S P C HAF + CI+ +R TCP+C+
Sbjct: 2 ATVAERCPICLEDPSNYSMALP--------CLHAFCYVCITRWIRQNP-TCPLCKV 48
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.0 bits (71), Expect = 0.93, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 61 CAICLEAL---------SYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111
CAIC + + +S S + C+HAFHF CIS ++ V CP+
Sbjct: 51 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNRE 109
Query: 112 W 112
W
Sbjct: 110 W 110
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
C IC++ YS G+ I + +C H F C+ ++++ + TCP CR
Sbjct: 13 CPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 58
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 43 NFSFSEDAATTTANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGS 102
+ + +DA + + + C IC+E L T C+H C S V S
Sbjct: 2 SMALPKDAIPSLSECQ--CGICMEILVEP---------VTLPCNHTLCKPCFQSTVEKAS 50
Query: 103 VTCPICR---AHWTQ 114
+ CP CR + WT+
Sbjct: 51 LCCPFCRRRVSSWTR 65
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 61 CAICLEAL---------SYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111
CAIC + + +S S + C+HAFHF CIS ++ V CP+
Sbjct: 32 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNRE 90
Query: 112 W 112
W
Sbjct: 91 W 91
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 61 CAICLEAL---------SYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111
CAIC + + +S S + C+HAFHF CIS ++ V CP+
Sbjct: 24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNRE 82
Query: 112 W 112
W
Sbjct: 83 W 83
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 61 CAICLEAL---------SYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111
CAIC + + +S S + C+HAFHF CIS ++ V CP+
Sbjct: 40 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNRE 98
Query: 112 W 112
W
Sbjct: 99 W 99
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 61 CAICLEAL---------SYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111
CAIC + + +S S + C+HAFHF CIS ++ V CP+
Sbjct: 42 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNRE 100
Query: 112 W 112
W
Sbjct: 101 W 101
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 61 CAICLEAL---------SYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111
CAIC + + +S S + C+HAFHF CIS ++ V CP+
Sbjct: 40 CAICRNHIXDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNRE 98
Query: 112 W 112
W
Sbjct: 99 W 99
>pdb|3SWE|A Chain A, Haemophilus Influenzae Mura In Complex With
Udp-N-Acetylmuramic Acid And Covalent Adduct Of Pep With
Cys117
Length = 424
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 14/55 (25%)
Query: 452 DVRVEYSYVEGGIDECIRTGETLVN-----------IEDKREASNERIEPVSGTD 495
D+R S V G CI TGET+V+ IEDK +IE SG+D
Sbjct: 371 DLRASISLVLAG---CIATGETIVDRIYHIDRGYEHIEDKLRGLGAKIERFSGSD 422
>pdb|2RL1|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine Enolpyruvyl
Transferase From Haemophilus Influenzae In Complex With
Udp-N-Acetylglucosamine
pdb|2RL2|A Chain A, Crystal Structure Of Udp-n-acetylglucosamine Enolpyruvyl
Transferase From Haemophilus Influenzae In Complex With
Udp-n-acetylglucosamine And Fosfomycin
Length = 424
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 14/55 (25%)
Query: 452 DVRVEYSYVEGGIDECIRTGETLVN-----------IEDKREASNERIEPVSGTD 495
D+R S V G CI TGET+V+ IEDK +IE SG+D
Sbjct: 371 DLRASISLVLAG---CIATGETIVDRIYHIDRGYEHIEDKLRGLGAKIERFSGSD 422
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 85 CSHAFHFACISSNVRHGSVTCPICRAHW 112
C+HAFHF CIS ++ V CP+ W
Sbjct: 67 CNHAFHFHCISRWLKTRQV-CPLDNREW 93
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHW-TQLP 116
C ICL L G+ + C H FH C+ + CPICR QLP
Sbjct: 17 CTICLSILE------EGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEAQLP 66
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRA 110
+ LC +C+ Q + C+H FH C+ ++ + TCPICRA
Sbjct: 23 QTLCVVCMCDFESR------QLLRVLPCNHEFHAKCVDKWLK-ANRTCPICRA 68
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPI 107
+K C ICL AL +A+ T C H F ACI ++R CP+
Sbjct: 24 SKYECPICLMALR--------EAVQTP-CGHRFCKACIIKSIRDAGHKCPV 65
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPI 107
+K C ICL AL +A+ T C H F ACI ++R CP+
Sbjct: 5 SKYECPICLMALR--------EAVQTP-CGHRFCKACIIKSIRDAGHKCPV 46
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPI 107
+K C ICL AL +A+ T C H F ACI ++R CP+
Sbjct: 17 SKYECPICLMALR--------EAVQTP-CGHRFCKACIIKSIRDAGHKCPV 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,935,285
Number of Sequences: 62578
Number of extensions: 614660
Number of successful extensions: 2109
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2098
Number of HSP's gapped (non-prelim): 39
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)