BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009657
(529 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 44 FSFSEDAATTTANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSV 103
F++ +DA+ ++A++ C ICLE + QA C H FH ACI + G+
Sbjct: 752 FAYFDDASLSSADS---CLICLETYTNGDICRKLQA-----CKHFFHQACIDQWLTTGNN 803
Query: 104 TCPICRAH 111
+CP+CRAH
Sbjct: 804 SCPLCRAH 811
>sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1
Length = 547
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120
C +CLE + S G + T C H FH C+ + G+ +CP+CR + ++ + +
Sbjct: 208 CVVCLERMDSSITG-----LITIVCQHTFHCPCLQ---KWGNSSCPVCR-YTQKVQSSEF 258
Query: 121 PAACSISCNQNDPVFRILDDSIATFRVH 148
+ C++ C D ++ +I R H
Sbjct: 259 QSKCTVCCYDKDLWICLICGNIGCGRYH 286
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
Length = 592
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120
C +CLE + S G I T C+H+FH C+ R TCP+CR + Q P +
Sbjct: 264 CTVCLERMDESVNG-----ILTTLCNHSFHSQCLQ---RWDDTTCPVCR--YCQTPEPVE 313
Query: 121 PAAC 124
C
Sbjct: 314 ENKC 317
>sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1
Length = 591
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120
C +CLE + S G I T C+H+FH C+ R TCP+CR + Q P +
Sbjct: 263 CTVCLERMDESVNG-----ILTTLCNHSFHSQCLQ---RWDDTTCPVCR--YCQTPEPVE 312
Query: 121 PAAC 124
C
Sbjct: 313 ENKC 316
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 20/100 (20%)
Query: 30 PPPPVLISGSPAKNFSFSEDAATT--------TANAKNLCAICLEALSYSSGGSPGQAIF 81
P P ++ P+KNFS AA T + LC IC++ + + F
Sbjct: 8 PLVPAVVKPEPSKNFSTDTTAAGTFLLVPTMSDLDKDFLCPICMQII---------KDAF 58
Query: 82 TAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLYP 121
C H+F + CI +++R+ S CP C + T NL+P
Sbjct: 59 LTACGHSFCYMCIITHLRNKS-DCPCCGHYLTN--SNLFP 95
>sp|P23801|PE38_NPVAC Major immediate early protein OS=Autographa californica nuclear
polyhedrosis virus GN=PE38 PE=4 SV=2
Length = 321
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 21/94 (22%)
Query: 36 ISGSPAKNFSFSEDAATTTANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACI- 94
++ P NF F C++CLE S S + I T C H F F C+
Sbjct: 74 LNNEPVINFKFE-------------CSVCLETYSQQSNDTCPFLIPTT-CDHGFCFKCVI 119
Query: 95 -----SSNVRHGSVTCPICRAHWTQLPRNLYPAA 123
+ N+ H +V CP+C ++ R+L P A
Sbjct: 120 NLQSNAMNIPHSTVCCPLCNTQ-VKMWRSLKPNA 152
>sp|Q10322|DMA1_SCHPO Probable E3 ubiquitin-protein ligase dma1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dma1 PE=1 SV=1
Length = 267
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACI--SSNVRHGSVTCPICRAH 111
C ICL + P QA+F A CSH++H+ CI + N H +C ICR +
Sbjct: 192 CCICLMPVL------PCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICRKY 238
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 54 TANAKNLCAICLEALSYSSGGSPGQAIFTAQ--------CSHAFHFACISSNVRHGSVTC 105
+AN N+C IC++ L + SP Q + + C H H +C+ N S TC
Sbjct: 342 SANDDNICIICMDELIH----SPNQQTWKNKNKKPKRLPCGHILHLSCL-KNWMERSQTC 396
Query: 106 PICR 109
PICR
Sbjct: 397 PICR 400
>sp|P38823|DMA1_YEAST E3 ubiquitin-protein ligase DMA1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DMA1 PE=1 SV=1
Length = 416
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 45 SFSEDAATTTANAKNL--------CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISS 96
+F+++A + N + L C+ICL + P QAIF + C+H++HF C+
Sbjct: 303 AFNKEALSRIKNLQKLTTGLEQEDCSICLNKIK------PCQAIFISPCAHSWHFHCVRR 356
Query: 97 NV--RHGSVTCPICRAH 111
V + CP CR +
Sbjct: 357 LVIMNYPQFMCPNCRTN 373
>sp|P53924|DMA2_YEAST E3 ubiquitin-protein ligase DMA2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DMA2 PE=1 SV=1
Length = 522
Score = 39.3 bits (90), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 42 KNFSFSEDAATTTANAKNL--------CAICLEALSYSSGGSPGQAIFTAQCSHAFHFAC 93
K SF+++A N + L C+ICL + P QAIF + C+H++HF C
Sbjct: 406 KANSFNKEALQRLQNLQKLTTGIEEEDCSICLCKIK------PCQAIFISPCAHSWHFRC 459
Query: 94 ISSNV--RHGSVTCPICRA 110
+ V + CP CR+
Sbjct: 460 VRRLVMLSYPQFVCPNCRS 478
>sp|A6ZRW7|DMA2_YEAS7 E3 ubiquitin-protein ligase DMA2 OS=Saccharomyces cerevisiae
(strain YJM789) GN=DMA2 PE=3 SV=1
Length = 522
Score = 39.3 bits (90), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 42 KNFSFSEDAATTTANAKNL--------CAICLEALSYSSGGSPGQAIFTAQCSHAFHFAC 93
K SF+++A N + L C+ICL + P QAIF + C+H++HF C
Sbjct: 406 KANSFNKEALQRLQNLQKLTTGVEEEDCSICLCKIK------PCQAIFISPCAHSWHFRC 459
Query: 94 ISSNV--RHGSVTCPICRA 110
+ V + CP CR+
Sbjct: 460 VRRLVMLSYPQFVCPNCRS 478
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 38.9 bits (89), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
++CAICLE G + CSHA+H C+ + TCP+C+
Sbjct: 238 DVCAICLEEYE------DGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120
C+ICL+ P + +C H+F CIS + G CP+CR H+ L +NL
Sbjct: 16 CSICLD---------PMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRRHF--LLQNLR 64
Query: 121 P 121
P
Sbjct: 65 P 65
>sp|Q5UQ40|UBC4_MIMIV Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R795 PE=3 SV=1
Length = 1297
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 82 TAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLYPAACSISCNQNDPVFRILDDS 141
+ CSH+FH CIS + H TCP+C W + N ND V DD
Sbjct: 102 SVSCSHSFHACCISRWL-HTKKTCPLCNIEWQLIGAN------------NDSVVIYFDDK 148
Query: 142 IATFRV 147
F++
Sbjct: 149 NQEFKL 154
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
++CAICLE G + CSHA+H C+ + TCP+C+
Sbjct: 238 DVCAICLEEYE------DGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120
C IC+ SP I +C+H F ACI ++ CP+CR TQ +LY
Sbjct: 635 CPICI---------SPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQ--SDLY 683
Query: 121 PA 122
A
Sbjct: 684 NA 685
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 NFSFSEDAATTTANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGS 102
++ F+ D+ + + LC +C Q + C+H FH C+ ++ +
Sbjct: 365 SYRFNPDSHQS---EQTLCVVCFSDFEAR------QLLRVLPCNHEFHTKCVDKWLK-AN 414
Query: 103 VTCPICRAHWTQLPRN 118
TCPICRA +++PR
Sbjct: 415 RTCPICRADASEVPRE 430
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 NFSFSEDAATTTANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGS 102
++ F+ D+ + + LC +C Q + C+H FH C+ ++ +
Sbjct: 340 SYRFNPDSHQS---EQTLCVVCFSDFEVR------QLLRVLPCNHEFHAKCVDKWLK-AN 389
Query: 103 VTCPICRAHWTQLPRN 118
TCPICRA +++PR
Sbjct: 390 RTCPICRADASEVPRE 405
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 43 NFSFSEDAATTTANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGS 102
F +SE CAICL + CSH FH CI + S
Sbjct: 105 TFLYSEVKGLKIGKGGVECAICLSEFE-----DQETLRWMPPCSHTFHANCIDVWLSSWS 159
Query: 103 VTCPICRAHWTQLPRNLYP 121
TCP+CRA+ + P YP
Sbjct: 160 -TCPVCRANLSLKPGESYP 177
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQL 115
+ + LC +C Q + C+H FH C+ ++ + TCPICRA +++
Sbjct: 293 SEQTLCVVCFSDFEVR------QLLRVLPCNHEFHAKCVDKWLK-ANRTCPICRADASEV 345
Query: 116 PRN 118
PR
Sbjct: 346 PRE 348
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRA 110
NA + C +CL L G+ + C H FH C+ ++H + CP+CR+
Sbjct: 69 NAASDCIVCLSKLK------TGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 117
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 26/94 (27%)
Query: 40 PAKNFSFSEDAATTTANAKNL---------------CAICLEALSYSSGGSPGQAIFTAQ 84
P S ++ A+T+++ K L C++CLE ++ G+ + T
Sbjct: 175 PENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQVTV------GEIVRTLP 228
Query: 85 CSHAFHFACISSNVRHGSVTCPIC--RAH--WTQ 114
C H FH CI +R TCP+C RAH W +
Sbjct: 229 CLHQFHAGCIDPWLRQQG-TCPVCKFRAHSGWQE 261
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRA 110
CA+CL S + CSHAFH CI + ++ S TCP+CR
Sbjct: 143 CAVCLCEFS-----EKDKLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCRG 186
>sp|Q86UW9|DTX2_HUMAN Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens GN=DTX2
PE=1 SV=3
Length = 622
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 13/62 (20%)
Query: 61 CAICLEALSYSSGGSP---GQAIFT------AQCSHAFHFACI----SSNVRHGSVTCPI 107
C IC+E LS +SG S +AI + +CSHAFH C+ + + GS+ CP
Sbjct: 412 CIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 471
Query: 108 CR 109
C+
Sbjct: 472 CK 473
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 33 PVLISGSPAKNFSFSEDAATTTANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFA 92
P +I+ P +F+ A A + CA+CL L +A C H FH
Sbjct: 84 PTVIASLP----TFTVGATDGVAASATECAVCLSVLKEQ-----DKARELPNCKHIFHVD 134
Query: 93 CISSNVRHGSVTCPICRAHWTQLPR 117
C+ + + S TCP+CR PR
Sbjct: 135 CVDTWLTTCS-TCPVCRTEVEPRPR 158
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 43 NFSFSEDAATTTANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGS 102
F +SE CAICL +C H FH CI + + G
Sbjct: 106 TFVYSEVKTQKIGKGALECAICLNEFEDDE-----TLRLLPKCDHVFHPHCIGAWL-QGH 159
Query: 103 VTCPICRAH 111
VTCP+CR +
Sbjct: 160 VTCPVCRTN 168
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
+C ICL+ L + + T +C H F CI + +R G+ CP CR
Sbjct: 45 MCPICLDMLK--------KTMTTKECLHRFCSDCIVTALRSGNKECPTCR 86
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
++CAICL+ G + CSHA+H C+ + TCP+C+
Sbjct: 238 DVCAICLDEYE------DGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
++CAICL+ G + CSHA+H C+ + TCP+C+
Sbjct: 238 DVCAICLDEYE------DGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q95KF1|RN125_MACFA E3 ubiquitin-protein ligase RNF125 OS=Macaca fascicularis GN=RNF125
PE=2 SV=3
Length = 232
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 12/62 (19%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120
CA+CLE L Q + T +C H F +CI++++++ TCP CRA+ LP
Sbjct: 37 CAVCLEVLH--------QPVRT-RCGHVFCRSCIATSLKNNKWTCPYCRAY---LPSEGV 84
Query: 121 PA 122
PA
Sbjct: 85 PA 86
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
++CAICL+ G + CSHA+H C+ + TCP+C+
Sbjct: 238 DVCAICLDEYE------DGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
+C ICL+ L + T +C H F CI + +R G+ CP CR
Sbjct: 47 MCPICLDMLK--------NTMTTKECLHRFCSDCIVTALRSGNKECPTCR 88
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120
CA+CLE + S + C+H+FH C+ + TCP+CR + Q P +
Sbjct: 260 CAVCLERMDDS--------VLAILCNHSFHARCLE---QWADNTCPVCR--YVQSPEVVA 306
Query: 121 PAACSISCNQND 132
C+ ND
Sbjct: 307 EQRCNDCGMSND 318
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
++CAICL+ G + CSHA+H C+ + TCP+C+
Sbjct: 238 DVCAICLDEYE------DGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q96EQ8|RN125_HUMAN E3 ubiquitin-protein ligase RNF125 OS=Homo sapiens GN=RNF125 PE=1
SV=4
Length = 232
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 12/62 (19%)
Query: 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120
CA+CLE L Q + T +C H F +CI++++++ TCP CRA+ LP
Sbjct: 37 CAVCLEVL--------HQPVRT-RCGHVFCRSCIATSLKNNKWTCPYCRAY---LPSEGV 84
Query: 121 PA 122
PA
Sbjct: 85 PA 86
>sp|Q9CPX9|APC11_MOUSE Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11
PE=3 SV=1
Length = 84
Score = 37.4 bits (85), Expect = 0.29, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 55 ANAKNLCAICLEALS--YSSGGSPGQ--AIFTAQCSHAFHFACISS--NVRHGSVTCPIC 108
AN +N C IC A + PG + QCSH FH CI N + CP+C
Sbjct: 18 ANDEN-CGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMC 76
Query: 109 RAHW 112
R W
Sbjct: 77 RQEW 80
>sp|Q3ZCF6|APC11_BOVIN Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3
SV=1
Length = 84
Score = 37.4 bits (85), Expect = 0.29, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 55 ANAKNLCAICLEALS--YSSGGSPGQ--AIFTAQCSHAFHFACISS--NVRHGSVTCPIC 108
AN +N C IC A + PG + QCSH FH CI N + CP+C
Sbjct: 18 ANDEN-CGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMC 76
Query: 109 RAHW 112
R W
Sbjct: 77 RQEW 80
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1 PE=3
SV=2
Length = 406
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
+C ICL+ L + T +C H F CI + +R G+ CP CR
Sbjct: 47 MCPICLDMLK--------NTMTTKECLHRFCSDCIVTALRSGNKECPTCR 88
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1 PE=3
SV=1
Length = 377
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNL 119
+C ICL+ L + T +C H F CI + +R G+ CP CR R+L
Sbjct: 18 MCPICLDMLK--------NTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVS-KRSL 68
Query: 120 YP 121
P
Sbjct: 69 RP 70
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNL 119
+C ICL+ L + T +C H F CI + +R G+ CP CR R+L
Sbjct: 18 MCPICLDMLK--------NTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVS-KRSL 68
Query: 120 YP 121
P
Sbjct: 69 RP 70
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNL 119
+C ICL+ L + T +C H F CI + +R G+ CP CR R+L
Sbjct: 18 MCPICLDMLK--------NTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVS-KRSL 68
Query: 120 YP 121
P
Sbjct: 69 RP 70
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNL 119
+C ICL+ L + T +C H F CI + +R G+ CP CR R+L
Sbjct: 18 MCPICLDMLK--------NTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVS-KRSL 68
Query: 120 YP 121
P
Sbjct: 69 RP 70
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
+C ICL+ L + T +C H F CI + +R G+ CP CR
Sbjct: 47 MCPICLDMLK--------NTMTTKECLHRFCSDCIVTALRSGNKECPTCR 88
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
+C ICL+ L + T +C H F CI + +R G+ CP CR
Sbjct: 47 MCPICLDMLK--------NTMTTKECLHRFCSDCIVTALRSGNKECPTCR 88
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 49 DAATTTANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPIC 108
D+ ++ ++A +CAICLE S GQ + C H FH C+ + H TCP+C
Sbjct: 261 DSGSSCSSAP-VCAICLEEFSE------GQELRVISCLHEFHRNCVDPWL-HQHRTCPLC 312
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
+C ICL+ L + T +C H F CI + +R G+ CP CR
Sbjct: 50 MCPICLDMLK--------NTMTTKECLHRFCADCIITALRSGNKECPTCR 91
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 12/130 (9%)
Query: 6 LRKAARKMVVAACGSFTRRCPPPPPPPPVLISGSPAKNFSFSEDAATTTANAKNLCAICL 65
LR + AA FT P P +I P FS TA C++CL
Sbjct: 27 LRSSPFNRTTAASTFFTDPSSTPGGLNPSIIKSLPIFTFS------AVTALFAMECSVCL 80
Query: 66 EALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLYPAACS 125
+ G C H FH CI H +CP+CR+ + +
Sbjct: 81 SEFKDNESGR-----VMPNCKHTFHVHCIDMWF-HSHSSCPLCRSQIEPFAGGVKSSMDE 134
Query: 126 ISCNQNDPVF 135
++ + +DPV+
Sbjct: 135 VAISISDPVY 144
>sp|Q8R3P2|DTX2_MOUSE Probable E3 ubiquitin-protein ligase DTX2 OS=Mus musculus GN=Dtx2
PE=1 SV=2
Length = 619
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 61 CAICLEALSYSSGGS---------PGQAIFTAQCSHAFHFACI----SSNVRHGSVTCPI 107
C IC+E L+ +SG S P +CSHAFH C+ + + GS+ CP
Sbjct: 409 CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 468
Query: 108 CR 109
C+
Sbjct: 469 CK 470
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 46 FSEDAATTTANAKNLCAICLEALSYSSGGSPGQAIF--TAQCSHAFHFACISSNVRHGSV 103
+SE TTA+ CAICL G G+ + C+H FH CI + +R
Sbjct: 135 YSEAKGPTTASC---CAICL-------GDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNP- 183
Query: 104 TCPICRA 110
TCP+CR
Sbjct: 184 TCPVCRT 190
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109
+C ICL+ L + T +C H F CI + +R G+ CP CR
Sbjct: 50 MCPICLDMLK--------NTMTTKECLHRFCADCIITALRSGNKECPTCR 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,052,783
Number of Sequences: 539616
Number of extensions: 9242649
Number of successful extensions: 46706
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 283
Number of HSP's that attempted gapping in prelim test: 45832
Number of HSP's gapped (non-prelim): 1025
length of query: 529
length of database: 191,569,459
effective HSP length: 122
effective length of query: 407
effective length of database: 125,736,307
effective search space: 51174676949
effective search space used: 51174676949
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)