Query 009657
Match_columns 529
No_of_seqs 527 out of 3417
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 15:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03788 marine_srt_targ mari 99.8 2.6E-18 5.6E-23 192.0 22.2 185 261-448 268-486 (596)
2 cd01466 vWA_C3HC4_type VWA C3H 99.8 1.3E-18 2.8E-23 161.7 16.2 123 265-387 1-129 (155)
3 cd01463 vWA_VGCC_like VWA Volt 99.8 6.6E-18 1.4E-22 161.9 16.9 126 262-387 11-160 (190)
4 PF13768 VWA_3: von Willebrand 99.7 1.6E-16 3.4E-21 146.8 15.1 118 266-387 2-131 (155)
5 cd01461 vWA_interalpha_trypsin 99.7 1.8E-15 3.9E-20 140.8 16.9 124 264-389 2-136 (171)
6 TIGR00868 hCaCC calcium-activa 99.7 6.1E-16 1.3E-20 176.2 16.4 125 262-387 302-436 (863)
7 cd01465 vWA_subgroup VWA subgr 99.7 1.4E-15 3.1E-20 141.5 15.9 123 265-389 1-137 (170)
8 cd01464 vWA_subfamily VWA subf 99.6 8.2E-16 1.8E-20 145.5 11.9 119 265-390 4-146 (176)
9 cd01470 vWA_complement_factors 99.6 1.5E-15 3.2E-20 146.5 13.2 108 265-372 1-126 (198)
10 cd01480 vWA_collagen_alpha_1-V 99.6 2.5E-15 5.5E-20 143.7 14.3 126 264-390 2-149 (186)
11 cd01456 vWA_ywmD_type VWA ywmD 99.6 2.5E-15 5.4E-20 145.8 13.9 124 260-387 16-174 (206)
12 cd01472 vWA_collagen von Wille 99.6 5.2E-15 1.1E-19 138.0 13.9 121 265-387 1-136 (164)
13 cd01471 vWA_micronemal_protein 99.6 1.4E-14 2.9E-19 138.0 13.7 126 265-390 1-146 (186)
14 PRK13685 hypothetical protein; 99.6 2E-14 4.3E-19 149.6 15.2 126 262-391 86-238 (326)
15 cd01474 vWA_ATR ATR (Anthrax T 99.6 3.6E-14 7.9E-19 135.4 13.7 125 263-389 3-142 (185)
16 PF12034 DUF3520: Domain of un 99.6 2.8E-15 6.1E-20 142.2 5.9 108 411-526 2-162 (183)
17 PRK13406 bchD magnesium chelat 99.5 7.3E-14 1.6E-18 155.1 15.1 109 260-372 397-511 (584)
18 cd01451 vWA_Magnesium_chelatas 99.5 3.8E-13 8.2E-18 127.8 15.3 97 271-371 11-111 (178)
19 cd01477 vWA_F09G8-8_type VWA F 99.5 3.5E-13 7.6E-18 130.4 14.4 126 262-389 17-169 (193)
20 cd01482 vWA_collagen_alphaI-XI 99.5 5.1E-13 1.1E-17 125.0 14.2 123 265-389 1-138 (164)
21 cd01454 vWA_norD_type norD typ 99.5 6.4E-13 1.4E-17 125.4 12.3 100 271-372 11-117 (174)
22 cd01476 VWA_integrin_invertebr 99.4 2E-12 4.2E-17 120.2 14.6 120 265-387 1-137 (163)
23 cd01475 vWA_Matrilin VWA_Matri 99.4 2.1E-12 4.5E-17 127.2 14.9 126 263-390 1-144 (224)
24 cd01450 vWFA_subfamily_ECM Von 99.4 2.5E-12 5.4E-17 117.5 13.9 121 265-387 1-138 (161)
25 cd01462 VWA_YIEM_type VWA YIEM 99.4 2.6E-12 5.7E-17 118.2 13.6 121 266-391 2-134 (152)
26 cd01469 vWA_integrins_alpha_su 99.4 2.2E-12 4.7E-17 122.6 13.3 124 265-390 1-141 (177)
27 cd01473 vWA_CTRP CTRP for CS 99.4 2.4E-12 5.3E-17 124.3 12.4 126 265-390 1-148 (192)
28 TIGR03436 acidobact_VWFA VWFA- 99.4 5.5E-12 1.2E-16 129.0 14.3 124 262-390 51-203 (296)
29 cd01467 vWA_BatA_type VWA BatA 99.4 1.1E-11 2.3E-16 116.9 15.2 120 264-390 2-141 (180)
30 PF13519 VWA_2: von Willebrand 99.4 7E-12 1.5E-16 115.4 13.0 115 266-387 1-132 (172)
31 cd01453 vWA_transcription_fact 99.3 6.3E-12 1.4E-16 120.5 11.9 121 265-389 4-144 (183)
32 TIGR02031 BchD-ChlD magnesium 99.3 8.2E-12 1.8E-16 139.5 14.4 107 261-371 404-516 (589)
33 smart00327 VWA von Willebrand 99.3 6.2E-11 1.3E-15 109.6 14.1 122 264-387 1-140 (177)
34 PF13639 zf-RING_2: Ring finge 99.3 1.3E-12 2.8E-17 96.5 2.0 44 59-109 1-44 (44)
35 COG1240 ChlD Mg-chelatase subu 99.2 8.8E-11 1.9E-15 116.5 14.0 109 260-372 74-191 (261)
36 PF00092 VWA: von Willebrand f 99.2 1E-10 2.2E-15 108.8 12.5 106 266-373 1-118 (178)
37 KOG4628 Predicted E3 ubiquitin 99.2 1E-11 2.3E-16 128.4 6.0 50 59-114 230-279 (348)
38 PTZ00441 sporozoite surface pr 99.2 1.3E-10 2.9E-15 127.0 14.5 130 262-391 40-188 (576)
39 COG4245 TerY Uncharacterized p 99.2 1.5E-10 3.2E-15 109.6 12.5 105 261-372 2-121 (207)
40 PF12678 zf-rbx1: RING-H2 zinc 99.2 7.8E-12 1.7E-16 102.6 2.7 51 58-109 19-73 (73)
41 PF12861 zf-Apc11: Anaphase-pr 99.1 4.3E-11 9.2E-16 100.0 4.0 57 57-113 20-82 (85)
42 KOG2353 L-type voltage-depende 99.1 4.6E-10 9.9E-15 131.0 12.9 132 260-391 221-373 (1104)
43 TIGR02442 Cob-chelat-sub cobal 99.1 9.6E-10 2.1E-14 124.1 15.2 109 260-372 461-578 (633)
44 cd00198 vWFA Von Willebrand fa 99.1 2E-09 4.3E-14 96.6 14.3 121 265-387 1-137 (161)
45 cd01457 vWA_ORF176_type VWA OR 99.1 1.8E-09 3.9E-14 104.4 14.3 135 264-408 2-166 (199)
46 cd01481 vWA_collagen_alpha3-VI 99.1 1.6E-09 3.4E-14 102.3 12.8 122 266-389 2-141 (165)
47 COG5243 HRD1 HRD ubiquitin lig 99.0 2E-10 4.3E-15 117.6 5.4 56 55-111 284-343 (491)
48 COG5194 APC11 Component of SCF 99.0 1.3E-10 2.8E-15 94.8 3.0 55 58-113 20-81 (88)
49 cd01452 VWA_26S_proteasome_sub 99.0 5.3E-09 1.2E-13 100.8 14.0 133 271-409 14-162 (187)
50 KOG2930 SCF ubiquitin ligase, 99.0 1.6E-10 3.4E-15 98.7 1.8 56 57-113 45-108 (114)
51 PHA02929 N1R/p28-like protein; 98.9 8.9E-10 1.9E-14 109.4 3.6 57 57-115 173-229 (238)
52 COG5540 RING-finger-containing 98.9 7.6E-10 1.6E-14 110.9 3.1 49 57-111 322-370 (374)
53 cd00162 RING RING-finger (Real 98.8 4.4E-09 9.5E-14 76.1 3.4 45 60-112 1-45 (45)
54 KOG0823 Predicted E3 ubiquitin 98.8 5.4E-09 1.2E-13 102.0 4.4 51 55-114 44-96 (230)
55 KOG1493 Anaphase-promoting com 98.8 1.2E-09 2.6E-14 88.5 -0.2 57 57-113 19-81 (84)
56 cd01458 vWA_ku Ku70/Ku80 N-ter 98.7 9.4E-08 2E-12 93.8 12.0 117 276-392 24-173 (218)
57 PHA02926 zinc finger-like prot 98.7 9.9E-09 2.1E-13 99.6 3.9 60 56-115 168-232 (242)
58 cd01460 vWA_midasin VWA_Midasi 98.7 2.3E-07 4.9E-12 94.2 13.8 134 252-389 48-202 (266)
59 KOG0320 Predicted E3 ubiquitin 98.7 2E-08 4.3E-13 94.3 5.1 50 56-113 129-178 (187)
60 PF13923 zf-C3HC4_2: Zinc fing 98.6 2E-08 4.4E-13 72.2 3.1 39 61-108 1-39 (39)
61 PLN03208 E3 ubiquitin-protein 98.6 2.3E-08 4.9E-13 96.0 4.2 50 56-114 16-80 (193)
62 cd01455 vWA_F11C1-5a_type Von 98.6 3.3E-07 7.2E-12 88.4 11.5 108 276-390 25-151 (191)
63 PF13920 zf-C3HC4_3: Zinc fing 98.6 3.4E-08 7.3E-13 74.9 3.1 47 58-114 2-49 (50)
64 KOG0317 Predicted E3 ubiquitin 98.6 3.1E-08 6.7E-13 99.4 3.0 47 56-112 237-283 (293)
65 PF00097 zf-C3HC4: Zinc finger 98.6 4.8E-08 1E-12 70.7 3.2 40 61-108 1-41 (41)
66 KOG0802 E3 ubiquitin ligase [P 98.5 3.4E-08 7.4E-13 109.8 1.8 54 55-113 288-341 (543)
67 PF15227 zf-C3HC4_4: zinc fing 98.5 8.7E-08 1.9E-12 70.3 3.3 39 61-108 1-42 (42)
68 PRK10997 yieM hypothetical pro 98.4 2E-06 4.4E-11 93.7 13.3 124 261-390 322-456 (487)
69 COG2425 Uncharacterized protei 98.4 1.1E-06 2.4E-11 94.1 10.2 124 262-390 272-405 (437)
70 smart00184 RING Ring finger. E 98.4 1.7E-07 3.7E-12 65.3 2.7 39 61-108 1-39 (39)
71 PF14634 zf-RING_5: zinc-RING 98.3 4.1E-07 8.9E-12 67.2 3.3 44 60-110 1-44 (44)
72 KOG1734 Predicted RING-contain 98.3 2.5E-07 5.4E-12 91.8 0.9 59 55-113 221-281 (328)
73 COG2304 Uncharacterized protei 98.2 8.6E-06 1.9E-10 86.0 12.3 127 259-387 32-173 (399)
74 KOG0804 Cytoplasmic Zn-finger 98.2 6.8E-07 1.5E-11 94.3 1.6 47 57-111 174-220 (493)
75 smart00504 Ubox Modified RING 98.1 2.2E-06 4.8E-11 67.4 3.4 44 59-112 2-45 (63)
76 TIGR00599 rad18 DNA repair pro 98.1 2E-06 4.2E-11 91.6 3.2 48 57-114 25-72 (397)
77 COG5574 PEX10 RING-finger-cont 98.1 1.7E-06 3.7E-11 86.1 2.0 47 57-112 214-261 (271)
78 KOG0828 Predicted E3 ubiquitin 98.0 1.5E-06 3.4E-11 92.3 1.3 58 55-112 568-633 (636)
79 PF13445 zf-RING_UBOX: RING-ty 98.0 3.8E-06 8.3E-11 62.0 2.3 40 61-106 1-43 (43)
80 TIGR00570 cdk7 CDK-activating 98.0 6E-06 1.3E-10 84.8 4.1 52 58-113 3-54 (309)
81 KOG2164 Predicted E3 ubiquitin 97.9 6.1E-06 1.3E-10 88.7 2.4 47 58-113 186-236 (513)
82 PF10138 vWA-TerF-like: vWA fo 97.8 0.00046 1E-08 67.2 13.3 129 264-397 3-145 (200)
83 KOG0311 Predicted E3 ubiquitin 97.8 2.7E-06 5.9E-11 87.5 -2.1 50 56-113 41-90 (381)
84 PF05762 VWA_CoxE: VWA domain 97.7 0.00017 3.6E-09 71.5 9.2 104 261-372 54-163 (222)
85 KOG0287 Postreplication repair 97.7 1.3E-05 2.9E-10 82.0 1.4 48 58-115 23-70 (442)
86 COG5432 RAD18 RING-finger-cont 97.7 1.8E-05 3.8E-10 79.6 2.1 49 58-116 25-73 (391)
87 smart00744 RINGv The RING-vari 97.6 3.9E-05 8.5E-10 58.2 3.1 43 60-109 1-49 (49)
88 KOG2177 Predicted E3 ubiquitin 97.6 2.1E-05 4.5E-10 78.1 1.7 44 57-110 12-55 (386)
89 PF04564 U-box: U-box domain; 97.6 4.7E-05 1E-09 62.4 3.5 48 58-114 4-51 (73)
90 KOG0825 PHD Zn-finger protein 97.6 1.3E-05 2.8E-10 89.2 -0.1 55 58-119 123-177 (1134)
91 COG5219 Uncharacterized conser 97.6 2.1E-05 4.6E-10 89.0 1.4 54 56-111 1467-1521(1525)
92 KOG0827 Predicted E3 ubiquitin 97.5 3.3E-05 7E-10 80.5 1.9 48 59-111 5-54 (465)
93 KOG0824 Predicted E3 ubiquitin 97.5 4E-05 8.6E-10 77.7 1.8 54 58-120 7-60 (324)
94 PF11793 FANCL_C: FANCL C-term 97.4 3.8E-05 8.3E-10 62.6 0.5 52 58-113 2-66 (70)
95 PF14835 zf-RING_6: zf-RING of 97.4 6.2E-05 1.3E-09 59.8 0.9 43 59-112 8-50 (65)
96 KOG1645 RING-finger-containing 97.2 0.00018 3.9E-09 75.5 2.5 50 58-111 4-54 (463)
97 PF09967 DUF2201: VWA-like dom 97.1 0.0034 7.5E-08 56.8 9.0 85 271-371 9-95 (126)
98 KOG0978 E3 ubiquitin ligase in 97.0 0.00017 3.7E-09 81.1 0.4 46 59-113 644-689 (698)
99 KOG1039 Predicted E3 ubiquitin 96.9 0.00042 9E-09 72.7 2.1 56 56-113 159-221 (344)
100 KOG4172 Predicted E3 ubiquitin 96.9 0.00018 3.9E-09 55.2 -0.8 48 59-115 8-56 (62)
101 KOG4445 Uncharacterized conser 96.8 0.00029 6.3E-09 71.3 0.2 51 58-114 115-187 (368)
102 KOG4265 Predicted E3 ubiquitin 96.8 0.00056 1.2E-08 71.1 2.2 51 56-116 288-339 (349)
103 cd01478 Sec23-like Sec23-like: 96.8 0.02 4.3E-07 58.5 13.0 107 263-372 3-175 (267)
104 cd01468 trunk_domain trunk dom 96.8 0.02 4.3E-07 57.2 12.7 104 265-372 4-148 (239)
105 PF11789 zf-Nse: Zinc-finger o 96.6 0.0015 3.2E-08 51.2 2.6 42 58-107 11-53 (57)
106 KOG1941 Acetylcholine receptor 96.5 0.001 2.2E-08 69.6 1.2 49 58-111 365-414 (518)
107 PLN00162 transport protein sec 96.4 0.49 1.1E-05 55.2 22.9 105 263-370 124-294 (761)
108 cd01479 Sec24-like Sec24-like: 96.4 0.039 8.5E-07 55.4 12.1 104 264-373 3-146 (244)
109 KOG1785 Tyrosine kinase negati 96.4 0.0014 3E-08 68.8 1.5 49 58-115 369-418 (563)
110 cd01459 vWA_copine_like VWA Co 96.4 0.03 6.6E-07 56.7 11.0 117 276-392 62-194 (254)
111 KOG4159 Predicted E3 ubiquitin 96.3 0.0018 4E-08 69.3 1.9 54 56-119 82-135 (398)
112 COG4548 NorD Nitric oxide redu 96.1 0.0097 2.1E-07 65.0 6.4 106 265-372 445-566 (637)
113 COG5152 Uncharacterized conser 96.0 0.0023 5E-08 61.5 0.9 45 59-113 197-241 (259)
114 PF04811 Sec23_trunk: Sec23/Se 95.9 0.038 8.2E-07 55.2 9.3 102 266-371 5-147 (243)
115 KOG0297 TNF receptor-associate 95.9 0.0032 7E-08 67.6 1.6 49 56-113 19-67 (391)
116 PF03731 Ku_N: Ku70/Ku80 N-ter 95.9 0.036 7.9E-07 54.3 8.9 94 277-370 22-140 (224)
117 KOG1428 Inhibitor of type V ad 95.9 0.0043 9.3E-08 73.3 2.4 57 56-118 3484-3549(3738)
118 PF11775 CobT_C: Cobalamin bio 95.9 0.1 2.2E-06 51.6 11.5 99 271-371 23-148 (219)
119 PHA02825 LAP/PHD finger-like p 95.7 0.0087 1.9E-07 55.9 3.4 51 56-114 6-60 (162)
120 PF14570 zf-RING_4: RING/Ubox 95.7 0.011 2.3E-07 44.7 3.1 48 61-113 1-48 (48)
121 KOG2879 Predicted E3 ubiquitin 95.7 0.0097 2.1E-07 60.0 3.7 48 58-113 239-287 (298)
122 PF06707 DUF1194: Protein of u 95.7 0.26 5.7E-06 48.4 13.5 120 271-390 14-155 (205)
123 KOG4185 Predicted E3 ubiquitin 95.3 0.011 2.5E-07 60.7 3.0 57 58-118 3-59 (296)
124 PHA02862 5L protein; Provision 95.1 0.015 3.3E-07 53.4 2.6 47 59-113 3-53 (156)
125 KOG2660 Locus-specific chromos 95.0 0.006 1.3E-07 63.0 -0.2 52 56-116 13-64 (331)
126 KOG1002 Nucleotide excision re 95.0 0.0085 1.8E-07 65.0 0.8 46 58-112 536-585 (791)
127 KOG2884 26S proteasome regulat 94.9 0.61 1.3E-05 46.0 13.2 127 276-410 24-163 (259)
128 PF10367 Vps39_2: Vacuolar sor 94.8 0.012 2.5E-07 50.9 1.1 33 56-95 76-108 (109)
129 COG4867 Uncharacterized protei 94.8 0.27 5.9E-06 52.7 11.1 86 271-371 474-565 (652)
130 PF07002 Copine: Copine; Inte 94.6 0.27 5.8E-06 45.8 9.6 117 276-392 11-146 (146)
131 KOG1952 Transcription factor N 94.5 0.018 4E-07 65.6 2.0 56 56-117 189-251 (950)
132 KOG2114 Vacuolar assembly/sort 94.3 0.019 4.2E-07 65.5 1.5 43 59-113 841-883 (933)
133 PF04285 DUF444: Protein of un 94.2 0.25 5.5E-06 53.5 9.8 88 271-371 257-348 (421)
134 PF11443 DUF2828: Domain of un 94.2 0.32 6.9E-06 54.2 10.8 95 271-370 351-448 (534)
135 KOG2034 Vacuolar sorting prote 94.1 0.023 5.1E-07 65.3 1.7 37 56-99 815-851 (911)
136 KOG3970 Predicted E3 ubiquitin 94.0 0.036 7.7E-07 54.5 2.6 48 58-113 50-105 (299)
137 PHA03096 p28-like protein; Pro 94.0 0.028 6E-07 57.9 1.9 52 59-111 179-232 (284)
138 KOG1813 Predicted E3 ubiquitin 94.0 0.022 4.7E-07 58.1 1.0 45 59-113 242-286 (313)
139 PF12906 RINGv: RING-variant d 93.8 0.04 8.6E-07 41.4 2.0 41 61-108 1-47 (47)
140 COG5222 Uncharacterized conser 93.7 0.033 7.2E-07 56.7 1.8 45 59-111 275-319 (427)
141 KOG0826 Predicted E3 ubiquitin 93.5 0.062 1.4E-06 55.6 3.3 44 57-109 299-342 (357)
142 COG5175 MOT2 Transcriptional r 93.4 0.045 9.7E-07 56.7 2.1 53 57-114 13-65 (480)
143 PF05883 Baculo_RING: Baculovi 93.0 0.038 8.3E-07 50.4 0.9 37 58-98 26-66 (134)
144 smart00187 INB Integrin beta s 93.0 0.4 8.6E-06 51.9 8.6 112 253-369 88-240 (423)
145 KOG3768 DEAD box RNA helicase 92.8 0.33 7.1E-06 53.9 7.7 103 264-369 2-133 (888)
146 TIGR01651 CobT cobaltochelatas 92.7 0.88 1.9E-05 51.1 11.1 95 271-372 403-529 (600)
147 PF04056 Ssl1: Ssl1-like; Int 92.6 1.4 3.1E-05 42.9 11.2 113 273-387 13-136 (193)
148 TIGR00578 ku70 ATP-dependent D 92.6 0.96 2.1E-05 51.3 11.5 115 276-390 34-182 (584)
149 KOG4739 Uncharacterized protei 92.4 0.056 1.2E-06 53.8 1.2 51 60-120 5-55 (233)
150 KOG1814 Predicted E3 ubiquitin 92.3 0.073 1.6E-06 56.6 2.0 49 56-110 182-237 (445)
151 COG5236 Uncharacterized conser 92.3 0.15 3.2E-06 53.1 4.1 55 57-120 60-115 (493)
152 KOG4275 Predicted E3 ubiquitin 92.1 0.034 7.4E-07 56.6 -0.7 43 58-114 300-343 (350)
153 PF04641 Rtf2: Rtf2 RING-finge 91.8 0.15 3.3E-06 51.7 3.6 52 56-114 111-162 (260)
154 PRK05325 hypothetical protein; 91.7 0.7 1.5E-05 49.8 8.6 89 271-372 233-325 (401)
155 TIGR02877 spore_yhbH sporulati 91.0 1.4 3E-05 47.0 9.7 89 271-372 213-305 (371)
156 KOG1571 Predicted E3 ubiquitin 90.5 0.13 2.8E-06 54.0 1.6 44 57-113 304-347 (355)
157 KOG4692 Predicted E3 ubiquitin 90.5 0.17 3.7E-06 52.8 2.4 49 56-114 420-468 (489)
158 KOG3268 Predicted E3 ubiquitin 90.4 0.21 4.6E-06 47.6 2.7 52 59-112 166-227 (234)
159 KOG0827 Predicted E3 ubiquitin 90.3 0.023 5.1E-07 59.7 -4.0 57 56-119 194-251 (465)
160 KOG1940 Zn-finger protein [Gen 90.1 0.17 3.6E-06 51.8 2.0 47 58-110 158-204 (276)
161 COG3552 CoxE Protein containin 89.2 0.85 1.8E-05 48.3 6.4 75 295-372 249-325 (395)
162 PF08746 zf-RING-like: RING-li 89.0 0.24 5.3E-06 36.5 1.6 42 61-108 1-43 (43)
163 KOG1001 Helicase-like transcri 89.0 0.16 3.4E-06 58.4 0.9 47 59-115 455-502 (674)
164 COG5183 SSM4 Protein involved 88.8 0.32 6.9E-06 55.6 3.1 52 55-113 9-66 (1175)
165 KOG0298 DEAD box-containing he 88.5 0.12 2.6E-06 61.7 -0.4 45 57-110 1152-1196(1394)
166 KOG0309 Conserved WD40 repeat- 88.4 0.24 5.2E-06 56.2 1.8 41 59-107 1029-1069(1081)
167 KOG0801 Predicted E3 ubiquitin 88.3 0.16 3.4E-06 47.8 0.2 30 56-91 175-204 (205)
168 PTZ00395 Sec24-related protein 88.1 70 0.0015 39.8 21.5 203 264-469 952-1283(1560)
169 KOG3053 Uncharacterized conser 88.1 0.31 6.8E-06 49.0 2.2 53 56-113 18-82 (293)
170 KOG1327 Copine [Signal transdu 87.9 3.2 6.8E-05 46.2 9.9 117 276-392 316-451 (529)
171 KOG3039 Uncharacterized conser 87.3 0.53 1.1E-05 47.1 3.3 53 56-114 219-271 (303)
172 KOG3800 Predicted E3 ubiquitin 85.9 0.59 1.3E-05 47.8 2.8 51 60-114 2-52 (300)
173 PF10272 Tmpp129: Putative tra 85.5 0.47 1E-05 50.4 2.0 29 85-113 311-351 (358)
174 PF07800 DUF1644: Protein of u 85.4 0.8 1.7E-05 43.1 3.2 54 58-119 2-97 (162)
175 PF14447 Prok-RING_4: Prokaryo 85.1 0.39 8.5E-06 37.3 0.9 34 77-113 17-50 (55)
176 PF11265 Med25_VWA: Mediator c 84.8 7.4 0.00016 38.9 9.9 109 262-370 11-150 (226)
177 KOG3899 Uncharacterized conser 84.4 0.5 1.1E-05 48.3 1.5 29 85-113 325-365 (381)
178 COG2718 Uncharacterized conser 82.2 5.9 0.00013 42.4 8.4 87 271-370 257-347 (423)
179 PF05290 Baculo_IE-1: Baculovi 82.2 0.86 1.9E-05 41.6 2.0 49 58-114 80-133 (140)
180 COG5220 TFB3 Cdk activating ki 81.8 0.56 1.2E-05 46.8 0.7 58 58-119 10-70 (314)
181 PF14569 zf-UDP: Zinc-binding 81.7 1.5 3.4E-05 36.4 3.1 54 57-114 8-63 (80)
182 KOG1812 Predicted E3 ubiquitin 81.4 0.66 1.4E-05 49.9 1.1 38 57-99 145-182 (384)
183 KOG1100 Predicted E3 ubiquitin 79.9 0.81 1.7E-05 45.1 1.1 38 60-111 160-198 (207)
184 PF00362 Integrin_beta: Integr 79.6 5.2 0.00011 43.7 7.2 115 250-368 88-242 (426)
185 PF02891 zf-MIZ: MIZ/SP-RING z 77.5 2.1 4.5E-05 32.6 2.5 43 60-111 4-50 (50)
186 KOG1609 Protein involved in mR 77.5 2.6 5.7E-05 43.2 4.1 52 58-114 78-135 (323)
187 KOG2817 Predicted E3 ubiquitin 77.3 1.7 3.7E-05 46.3 2.6 50 56-111 332-383 (394)
188 KOG2932 E3 ubiquitin ligase in 76.0 0.96 2.1E-05 46.7 0.4 31 81-114 105-135 (389)
189 KOG0825 PHD Zn-finger protein 75.4 3.2 7E-05 47.7 4.2 60 57-119 95-160 (1134)
190 COG5148 RPN10 26S proteasome r 75.2 21 0.00045 34.8 9.0 108 276-387 24-142 (243)
191 KOG4718 Non-SMC (structural ma 75.1 1.2 2.5E-05 43.8 0.6 50 56-114 179-228 (235)
192 COG3864 Uncharacterized protei 74.8 9.2 0.0002 39.9 7.0 107 248-371 246-355 (396)
193 COG1721 Uncharacterized conser 74.2 21 0.00047 38.6 10.2 100 264-370 224-334 (416)
194 KOG1812 Predicted E3 ubiquitin 72.5 2.2 4.7E-05 46.0 2.0 51 57-112 305-355 (384)
195 KOG3161 Predicted E3 ubiquitin 71.1 1.5 3.3E-05 49.3 0.4 48 59-114 12-59 (861)
196 KOG1986 Vesicle coat complex C 68.7 15 0.00033 42.0 7.5 40 271-310 130-169 (745)
197 smart00249 PHD PHD zinc finger 67.7 2.7 5.9E-05 29.9 1.0 31 60-96 1-31 (47)
198 KOG1985 Vesicle coat complex C 67.5 27 0.00059 40.8 9.3 100 264-368 294-431 (887)
199 PF00628 PHD: PHD-finger; Int 66.1 2 4.4E-05 32.0 0.1 45 60-110 1-50 (51)
200 PLN02189 cellulose synthase 65.8 5.2 0.00011 47.8 3.4 55 57-114 33-88 (1040)
201 KOG4362 Transcriptional regula 65.5 1.9 4.1E-05 49.2 -0.3 45 58-111 21-67 (684)
202 COG4547 CobT Cobalamin biosynt 62.2 22 0.00048 39.0 6.9 35 271-305 424-459 (620)
203 KOG3002 Zn finger protein [Gen 61.0 5.5 0.00012 41.5 2.2 45 57-113 47-91 (299)
204 PLN02436 cellulose synthase A 60.1 7.6 0.00017 46.6 3.4 54 57-114 35-90 (1094)
205 KOG3579 Predicted E3 ubiquitin 59.0 4.9 0.00011 41.2 1.4 36 59-100 269-305 (352)
206 KOG0802 E3 ubiquitin ligase [P 59.0 7.9 0.00017 43.6 3.2 45 56-114 477-521 (543)
207 PLN02638 cellulose synthase A 58.2 12 0.00026 45.1 4.5 55 57-114 16-71 (1079)
208 KOG2066 Vacuolar assembly/sort 55.8 4.6 0.0001 46.6 0.7 50 57-110 783-832 (846)
209 PLN02195 cellulose synthase A 54.9 12 0.00026 44.6 3.8 55 57-114 5-60 (977)
210 KOG2068 MOT2 transcription fac 52.6 22 0.00048 37.3 5.0 48 58-111 249-296 (327)
211 TIGR00627 tfb4 transcription f 51.8 1.4E+02 0.0031 30.8 10.7 112 278-389 28-184 (279)
212 KOG1815 Predicted E3 ubiquitin 51.1 8.9 0.00019 42.0 1.9 35 57-99 69-103 (444)
213 PLN02915 cellulose synthase A 51.0 16 0.00035 43.9 4.0 55 57-114 14-69 (1044)
214 PLN02400 cellulose synthase 50.1 12 0.00026 45.2 2.8 56 57-115 35-91 (1085)
215 KOG1829 Uncharacterized conser 49.4 5.1 0.00011 45.2 -0.3 30 80-113 532-561 (580)
216 KOG0269 WD40 repeat-containing 49.1 12 0.00027 43.1 2.6 42 58-107 779-820 (839)
217 PF05605 zf-Di19: Drought indu 48.9 7.6 0.00017 29.7 0.7 39 58-112 2-41 (54)
218 KOG2807 RNA polymerase II tran 48.7 79 0.0017 33.4 8.1 111 275-389 80-201 (378)
219 KOG1984 Vesicle coat complex C 47.7 5.8E+02 0.012 30.7 18.9 63 406-468 649-733 (1007)
220 KOG3113 Uncharacterized conser 45.3 18 0.00038 36.8 2.8 51 56-114 109-159 (293)
221 PF06844 DUF1244: Protein of u 45.2 11 0.00025 30.4 1.2 12 88-99 11-22 (68)
222 KOG0824 Predicted E3 ubiquitin 44.9 17 0.00037 37.7 2.7 52 56-116 103-154 (324)
223 PF14446 Prok-RING_1: Prokaryo 43.3 20 0.00044 27.9 2.2 44 58-111 5-50 (54)
224 COG5109 Uncharacterized conser 42.8 17 0.00037 37.9 2.3 48 56-109 334-383 (396)
225 PF03854 zf-P11: P-11 zinc fin 42.5 13 0.00028 28.2 1.0 27 84-111 17-44 (50)
226 KOG3005 GIY-YIG type nuclease 42.3 31 0.00067 35.3 4.0 52 57-111 181-241 (276)
227 COG0275 Predicted S-adenosylme 41.2 34 0.00074 35.8 4.2 32 276-307 218-249 (314)
228 smart00647 IBR In Between Ring 40.3 12 0.00026 28.8 0.6 36 60-97 20-58 (64)
229 smart00132 LIM Zinc-binding do 38.1 21 0.00045 24.2 1.5 37 60-112 1-37 (39)
230 PF03850 Tfb4: Transcription f 35.2 5.2E+02 0.011 26.6 12.3 113 277-389 23-183 (276)
231 COG5047 SEC23 Vesicle coat com 31.0 1.4E+02 0.003 34.1 7.0 53 258-310 117-170 (755)
232 KOG1701 Focal adhesion adaptor 30.7 8.4 0.00018 41.7 -2.2 27 85-120 352-378 (468)
233 COG3809 Uncharacterized protei 30.3 23 0.0005 29.6 0.8 11 104-114 23-33 (88)
234 TIGR00006 S-adenosyl-methyltra 29.7 62 0.0014 33.9 4.0 31 276-306 214-244 (305)
235 PF00412 LIM: LIM domain; Int 28.3 26 0.00056 26.4 0.7 38 61-114 1-38 (58)
236 KOG1815 Predicted E3 ubiquitin 28.2 21 0.00047 39.1 0.3 41 58-102 226-269 (444)
237 PF04423 Rad50_zn_hook: Rad50 28.0 18 0.0004 27.6 -0.2 11 104-114 22-32 (54)
238 PF04216 FdhE: Protein involve 27.5 18 0.0004 37.2 -0.3 50 56-110 170-219 (290)
239 PF07191 zinc-ribbons_6: zinc- 26.2 11 0.00023 30.9 -1.8 42 59-115 2-43 (70)
240 KOG4367 Predicted Zn-finger pr 26.1 29 0.00064 37.7 0.9 32 58-98 4-35 (699)
241 KOG4185 Predicted E3 ubiquitin 25.7 11 0.00025 38.5 -2.2 52 57-111 206-265 (296)
242 PF13901 DUF4206: Domain of un 25.6 42 0.00091 32.9 1.8 46 58-111 152-198 (202)
243 COG0603 Predicted PP-loop supe 25.0 89 0.0019 31.3 4.0 60 359-421 3-63 (222)
244 PF02318 FYVE_2: FYVE-type zin 24.8 15 0.00032 32.8 -1.4 50 58-111 54-103 (118)
245 PF04710 Pellino: Pellino; In 24.3 25 0.00055 37.9 0.0 51 58-111 277-337 (416)
246 COG5242 TFB4 RNA polymerase II 24.0 7.7E+02 0.017 25.0 12.5 98 292-389 60-191 (296)
247 COG3492 Uncharacterized protei 24.0 36 0.00078 29.3 0.9 12 88-99 42-53 (104)
248 PF10571 UPF0547: Uncharacteri 23.7 42 0.00092 22.1 1.0 9 60-68 2-10 (26)
249 PF01485 IBR: IBR domain; Int 23.5 19 0.0004 27.6 -0.9 37 59-97 19-58 (64)
250 KOG3842 Adaptor protein Pellin 23.3 75 0.0016 33.4 3.1 30 83-112 376-413 (429)
251 TIGR03876 cas_csaX CRISPR-asso 23.1 1.5E+02 0.0033 29.5 5.0 65 293-368 138-202 (281)
252 PRK00050 16S rRNA m(4)C1402 me 22.9 1E+02 0.0022 32.2 4.0 32 276-307 210-241 (296)
253 PF10146 zf-C4H2: Zinc finger- 22.8 49 0.0011 33.2 1.7 14 100-113 206-219 (230)
254 PF13719 zinc_ribbon_5: zinc-r 22.4 38 0.00083 23.9 0.6 31 60-90 4-36 (37)
255 PF13832 zf-HC5HC2H_2: PHD-zin 21.5 74 0.0016 27.5 2.4 32 57-96 54-87 (110)
256 PF09723 Zn-ribbon_8: Zinc rib 21.2 29 0.00062 25.3 -0.2 26 83-110 9-34 (42)
257 COG3357 Predicted transcriptio 20.4 38 0.00083 29.2 0.3 29 84-117 63-91 (97)
No 1
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=99.80 E-value=2.6e-18 Score=191.98 Aligned_cols=185 Identities=19% Similarity=0.257 Sum_probs=147.3
Q ss_pred CCCceeEEEE----ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecC-cccCHHhHHHHHHHHhccccCC
Q 009657 261 HQPATDLVLV----ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPL-KRMTSYGKRMALQVIDRLFYMG 335 (529)
Q Consensus 261 ~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl-~~mt~~~k~~a~~~I~~L~a~G 335 (529)
.+.|.+++|| |||.|.|++.+|+|+..++..|+++|+|+||.|++.+..++|. ...+..+++.+..+|+.|.++|
T Consensus 268 ~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~G 347 (596)
T TIGR03788 268 QVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLLFPVPVPATAHNLARARQFVAGLQADG 347 (596)
T ss_pred cCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEeccccccCCHHHHHHHHHHHhhCCCCC
Confidence 4788999998 9999999999999999999999999999999999999998875 3567778999999999999999
Q ss_pred CCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchhhh----cc-cccccEEEEeeeeeccCCh-------------
Q 009657 336 QADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYHAI----NL-QVPFPVHRFHVGFGFGSSN------------- 397 (529)
Q Consensus 336 gTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~~~----~~-~~~v~I~TfgvGfGfG~d~------------- 397 (529)
||+|..||+.|++.. .....+..+.|||||||...+...+ .. ..+++|+|||+|- +.+.
T Consensus 348 gT~l~~aL~~a~~~~-~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~ri~tvGiG~--~~n~~lL~~lA~~g~G~ 424 (596)
T TIGR03788 348 GTEMAGALSAALRDD-GPESSGALRQVVFLTDGAVGNEDALFQLIRTKLGDSRLFTVGIGS--APNSYFMRKAAQFGRGS 424 (596)
T ss_pred CccHHHHHHHHHHhh-cccCCCceeEEEEEeCCCCCCHHHHHHHHHHhcCCceEEEEEeCC--CcCHHHHHHHHHcCCCE
Confidence 999999999999873 2223456789999999987543222 11 2357899984433 2221
Q ss_pred -------hhHHHHHHHHHHhhhceeeeeEEEEEee----CCceEEcCCcCCCcEEEEEEEeC
Q 009657 398 -------GFVMHEFEEFLATLLGGNVQEIQLRIGE----EARIIRLGELRGGEERRILLDLG 448 (529)
Q Consensus 398 -------~~~~~~f~~~la~~l~~va~dv~l~i~~----~~~~v~lGdL~age~r~~L~el~ 448 (529)
+.+...+.+.+..+...+++|++|.++. +-....+++||+|++..+..+++
T Consensus 425 ~~~i~~~~~~~~~~~~~l~~~~~p~l~~v~v~~~~~~~~~v~P~~~p~L~~g~~l~v~g~~~ 486 (596)
T TIGR03788 425 FTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDNGNAADVYPSPIPDLYRGEPLQIAIKLQ 486 (596)
T ss_pred EEECCCHHHHHHHHHHHHHhhcCeEEEEEEEEEcCCccceeccCCCccccCCCEEEEEEEec
Confidence 2334456788888888999999999974 23567899999999987777764
No 2
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.80 E-value=1.3e-18 Score=161.69 Aligned_cols=123 Identities=43% Similarity=0.652 Sum_probs=108.9
Q ss_pred eeEEEE----ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCCChH
Q 009657 265 TDLVLV----ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPI 340 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~ 340 (529)
+||+|| |||.+.||+.+|+|+..+++.|.++|+++||+|++.++.+.|+++++..++..+..+|+.+.++|+|+++
T Consensus 1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~ 80 (155)
T cd01466 1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPLRRMTAKGKRSAKRVVDGLQAGGGTNVV 80 (155)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCCCcccCHHHHHHHHHHHHhccCCCCccHH
Confidence 478877 8999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEccCCCCcchhhh-c-ccccccEEEE
Q 009657 341 EGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYHAI-N-LQVPFPVHRF 387 (529)
Q Consensus 341 ~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~~~-~-~~~~v~I~Tf 387 (529)
.||+.|++++..+..++..+.|||||||.++..... . ...++.||+|
T Consensus 81 ~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~v~v~~i 129 (155)
T cd01466 81 GGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAVVLRADNAPIPIHTF 129 (155)
T ss_pred HHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchhhhcccCCCceEEEE
Confidence 999999999987666677789999999987653222 1 2457999998
No 3
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.78 E-value=6.6e-18 Score=161.87 Aligned_cols=126 Identities=25% Similarity=0.391 Sum_probs=105.7
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCc-----ccCHHhHHHHHHHHhccc
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLK-----RMTSYGKRMALQVIDRLF 332 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~-----~mt~~~k~~a~~~I~~L~ 332 (529)
..|.|+||| |||.+.||+.+|+++..+++.|.++|+++||+|++.++.++|+. ..+..+++.++.+|+.|.
T Consensus 11 ~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 90 (190)
T cd01463 11 TSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALDMLE 90 (190)
T ss_pred cCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHhhCC
Confidence 589999999 89999999999999999999999999999999999999998754 335568899999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhcc-------CCCCCCEEEEccCCCCcchhhh----cc----cccccEEEE
Q 009657 333 YMGQADPIEGLKKGIKILEDRA-------HKNPQSCILHLSDTPTRTYHAI----NL----QVPFPVHRF 387 (529)
Q Consensus 333 a~GgTni~~gL~~A~~~l~~~~-------~~n~v~~IILLTDG~~~~~~~~----~~----~~~v~I~Tf 387 (529)
++|+|++..||+.|++++.+.+ .++..+.|||||||.++....+ .. ..++.|+||
T Consensus 91 ~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~v~i~ti 160 (190)
T cd01463 91 AKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYNWDKNSEIPVRVFTY 160 (190)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhcccccCCCcEEEEEE
Confidence 9999999999999999998722 1244678999999998653321 11 235888888
No 4
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.71 E-value=1.6e-16 Score=146.79 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=101.4
Q ss_pred eEEEE----ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecC-cccCHHhHHHHHHHHhcccc-CCCCCh
Q 009657 266 DLVLV----ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPL-KRMTSYGKRMALQVIDRLFY-MGQADP 339 (529)
Q Consensus 266 DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl-~~mt~~~k~~a~~~I~~L~a-~GgTni 339 (529)
|+||| |||.|.+ +.+|+++..++++|+++|+|+||.|++.++.+.|- ...++.+++.+.+.|+.+.+ .|+|++
T Consensus 2 ~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t~l 80 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEALQWIKSLEANSGGTDL 80 (155)
T ss_pred eEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCccH
Confidence 67887 8999999 99999999999999999999999999999988864 66788899999999999999 999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchh-hh----c-ccccccEEEE
Q 009657 340 IEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYH-AI----N-LQVPFPVHRF 387 (529)
Q Consensus 340 ~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~-~~----~-~~~~v~I~Tf 387 (529)
..||+.|++.+ ..++....|||||||.+.... .+ . ....++||||
T Consensus 81 ~~aL~~a~~~~---~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~~~~~i~~~ 131 (155)
T PF13768_consen 81 LAALRAALALL---QRPGCVRAIILLTDGQPVSGEEEILDLVRRARGHIRIFTF 131 (155)
T ss_pred HHHHHHHHHhc---ccCCCccEEEEEEeccCCCCHHHHHHHHHhcCCCceEEEE
Confidence 99999999876 345678899999999963322 11 1 2356899998
No 5
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.67 E-value=1.8e-15 Score=140.79 Aligned_cols=124 Identities=19% Similarity=0.330 Sum_probs=102.8
Q ss_pred ceeEEEE----ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCc-ccCHHhHHHHHHHHhccccCCCCC
Q 009657 264 ATDLVLV----ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLK-RMTSYGKRMALQVIDRLFYMGQAD 338 (529)
Q Consensus 264 P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~-~mt~~~k~~a~~~I~~L~a~GgTn 338 (529)
|.|++|| |||.|.|++.+|+++..++..|+++|+++||+|++.+..+.+.. ..+..+...+...|+.+.++|+|+
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T~ 81 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGTN 81 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcCCCCCcC
Confidence 7888888 89999999999999999999999999999999999998887642 345567788899999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchhhh----c--ccccccEEEEee
Q 009657 339 PIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYHAI----N--LQVPFPVHRFHV 389 (529)
Q Consensus 339 i~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~~~----~--~~~~v~I~Tfgv 389 (529)
+..||..|++.+.. .++....|||+|||..+....+ . .+.+++||++|+
T Consensus 82 l~~al~~a~~~l~~--~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~ 136 (171)
T cd01461 82 MNDALEAALELLNS--SPGSVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGI 136 (171)
T ss_pred HHHHHHHHHHhhcc--CCCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEe
Confidence 99999999999865 2456789999999986543221 1 134899999833
No 6
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.67 E-value=6.1e-16 Score=176.18 Aligned_cols=125 Identities=20% Similarity=0.187 Sum_probs=101.3
Q ss_pred CCceeEEEE----ecCCc-chHHHHHHHHHHH-HHhcCCCCeEEEEEeCCCeEEeecCcccCHHh-HHHHHHHHhccccC
Q 009657 262 QPATDLVLV----ASPNG-PHLRLLKQSMALV-VFSLRPNDRLAIVTYSSAAARVFPLKRMTSYG-KRMALQVIDRLFYM 334 (529)
Q Consensus 262 r~P~DLV~V----GSM~G-~kL~l~K~Am~~v-i~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~-k~~a~~~I~~L~a~ 334 (529)
+.+.++||| |||.+ +||..+|+|++.+ .+.|.++|+++||+|++.+.++.||++++..+ ++.+...+ .+.++
T Consensus 302 ~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pLt~Its~~dr~aL~~~L-~~~A~ 380 (863)
T TIGR00868 302 IRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNELIQITSSAERDALTANL-PTAAS 380 (863)
T ss_pred cCCceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeeccccCCcHHHHHHHHHhh-ccccC
Confidence 455678877 99986 6899999998855 56789999999999999999999999987754 44444444 46799
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchhhh---cccccccEEEE
Q 009657 335 GQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYHAI---NLQVPFPVHRF 387 (529)
Q Consensus 335 GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~~~---~~~~~v~I~Tf 387 (529)
|||+|++||++|+++|++...++..+.|||||||+++..... ..+.+++||||
T Consensus 381 GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~~~~l~~lk~~gVtI~TI 436 (863)
T TIGR00868 381 GGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTISSCFEEVKQSGAIIHTI 436 (863)
T ss_pred CCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCHHHHHHHHHHcCCEEEEE
Confidence 999999999999999998766667789999999998754322 12568999999
No 7
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.67 E-value=1.4e-15 Score=141.52 Aligned_cols=123 Identities=31% Similarity=0.403 Sum_probs=103.0
Q ss_pred eeEEEE----ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCCChH
Q 009657 265 TDLVLV----ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPI 340 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~ 340 (529)
+|++|| |||.+.+++.+|+++..+++.|.++|+++||+|++.++.++|++.. .+++.++..|+.+.++|+|++.
T Consensus 1 ~~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~g~T~~~ 78 (170)
T cd01465 1 LNLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPV--RDKAAILAAIDRLTAGGSTAGG 78 (170)
T ss_pred CcEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCccc--chHHHHHHHHHcCCCCCCCCHH
Confidence 467777 8999999999999999999999999999999999999999887654 3468888999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEccCCCCcch----hhh----c--ccccccEEEEee
Q 009657 341 EGLKKGIKILEDRAHKNPQSCILHLSDTPTRTY----HAI----N--LQVPFPVHRFHV 389 (529)
Q Consensus 341 ~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~----~~~----~--~~~~v~I~Tfgv 389 (529)
.||+.|++.+++...+...+.|||+|||.++.. ..+ . ...++.||+||+
T Consensus 79 ~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~ 137 (170)
T cd01465 79 AGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGF 137 (170)
T ss_pred HHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEe
Confidence 999999999988665566688999999987532 111 1 246799999944
No 8
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.65 E-value=8.2e-16 Score=145.50 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=92.3
Q ss_pred eeEEEE----ecCCcchHHHHHHHHHHHHHhcCC------CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccC
Q 009657 265 TDLVLV----ASPNGPHLRLLKQSMALVVFSLRP------NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYM 334 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~------~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~ 334 (529)
++++|| |||.|.+++.+|+|+..+++.|.+ +++++||+|++.++.++|++.+.. ..++.+.++
T Consensus 4 ~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~~~~-------~~~~~l~~~ 76 (176)
T cd01464 4 LPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPLES-------FQPPRLTAS 76 (176)
T ss_pred CCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCccHHh-------cCCCcccCC
Confidence 455665 999999999999999999999964 569999999999999999976432 235678899
Q ss_pred CCCChHHHHHHHHHHHHhccC-------CCCCCEEEEccCCCCcchhh-----hc--ccccccEEEEeee
Q 009657 335 GQADPIEGLKKGIKILEDRAH-------KNPQSCILHLSDTPTRTYHA-----IN--LQVPFPVHRFHVG 390 (529)
Q Consensus 335 GgTni~~gL~~A~~~l~~~~~-------~n~v~~IILLTDG~~~~~~~-----~~--~~~~v~I~TfgvG 390 (529)
|||+++.||+.|++++..... ....+.|||||||.+++... +. ...++.|++||||
T Consensus 77 GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG 146 (176)
T cd01464 77 GGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVG 146 (176)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEec
Confidence 999999999999999976432 12346899999999865211 11 1346899998443
No 9
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.64 E-value=1.5e-15 Score=146.46 Aligned_cols=108 Identities=11% Similarity=0.196 Sum_probs=90.7
Q ss_pred eeEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc-----
Q 009657 265 TDLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF----- 332 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~----- 332 (529)
+|++|| |||.+.+++.+|+++..+++.|. ++||++||+|++.++.++|++.....++..++.+|+.+.
T Consensus 1 ~di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (198)
T cd01470 1 LNIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDFNSNDADDVIKRLEDFNYDDHG 80 (198)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccCCCCCHHHHHHHHHhCCccccc
Confidence 478888 89999999999999999999986 389999999999999999998766667889999999886
Q ss_pred cCCCCChHHHHHHHHHHHHhccC------CCCCCEEEEccCCCCcc
Q 009657 333 YMGQADPIEGLKKGIKILEDRAH------KNPQSCILHLSDTPTRT 372 (529)
Q Consensus 333 a~GgTni~~gL~~A~~~l~~~~~------~n~v~~IILLTDG~~~~ 372 (529)
.+|||+++.||+.+++.+..... .+..+.|||||||+++.
T Consensus 81 ~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~ 126 (198)
T cd01470 81 DKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNM 126 (198)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCC
Confidence 35899999999999987743211 12346799999998863
No 10
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.64 E-value=2.5e-15 Score=143.73 Aligned_cols=126 Identities=18% Similarity=0.152 Sum_probs=104.3
Q ss_pred ceeEEEE----ecCCcchHHHHHHHHHHHHHhcC---------CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhc
Q 009657 264 ATDLVLV----ASPNGPHLRLLKQSMALVVFSLR---------PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDR 330 (529)
Q Consensus 264 P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---------~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~ 330 (529)
|+||||| |||.+.+++.+|++++.+++.|. .++|++||+|++.+++.+|++.. ..++..+.++|++
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~-~~~~~~l~~~i~~ 80 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRD-IRNYTSLKEAVDN 80 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccc-cCCHHHHHHHHHh
Confidence 7899999 89999999999999999999993 46899999999999999998753 3578999999999
Q ss_pred cc-cCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchh------hhc--ccccccEEEEeee
Q 009657 331 LF-YMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYH------AIN--LQVPFPVHRFHVG 390 (529)
Q Consensus 331 L~-a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~------~~~--~~~~v~I~TfgvG 390 (529)
+. .+|+|+++.||+.|.+.+.....++..+.|||+|||.++... ..+ ...+|.|+++|+|
T Consensus 81 l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig 149 (186)
T cd01480 81 LEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVG 149 (186)
T ss_pred CccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecC
Confidence 97 589999999999999999874445677899999999864211 111 2678999999443
No 11
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.64 E-value=2.5e-15 Score=145.82 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=99.0
Q ss_pred cCCCceeEEEE----ecCC------cchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCe------EEeecCcccC------
Q 009657 260 AHQPATDLVLV----ASPN------GPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAA------ARVFPLKRMT------ 317 (529)
Q Consensus 260 ~~r~P~DLV~V----GSM~------G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a------~~l~pl~~mt------ 317 (529)
..+.|.+++|| |||. +.||+.+|+++..+++.|.++|+++||+|++.+ +.++|...++
T Consensus 16 ~~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~ 95 (206)
T cd01456 16 EPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGF 95 (206)
T ss_pred ccCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCC
Confidence 34788999998 8998 689999999999999999999999999999953 3443322221
Q ss_pred -HHhHHHHHHHHhccc-cCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchh---h-h---ccc----ccccE
Q 009657 318 -SYGKRMALQVIDRLF-YMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYH---A-I---NLQ----VPFPV 384 (529)
Q Consensus 318 -~~~k~~a~~~I~~L~-a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~---~-~---~~~----~~v~I 384 (529)
..++..+.++|+.+. ++|+|+|+.||+.|.+.+. .+..+.|||||||.++... . . ... .++.|
T Consensus 96 ~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~----~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i 171 (206)
T cd01456 96 PSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD----PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKV 171 (206)
T ss_pred CcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC----CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceE
Confidence 147899999999998 9999999999999999986 3455799999999876531 1 1 112 48999
Q ss_pred EEE
Q 009657 385 HRF 387 (529)
Q Consensus 385 ~Tf 387 (529)
|+|
T Consensus 172 ~~i 174 (206)
T cd01456 172 NVI 174 (206)
T ss_pred EEE
Confidence 999
No 12
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.62 E-value=5.2e-15 Score=138.04 Aligned_cols=121 Identities=21% Similarity=0.231 Sum_probs=99.2
Q ss_pred eeEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc-CCC
Q 009657 265 TDLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY-MGQ 336 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a-~Gg 336 (529)
+|+||| |||.+.+++.+|+++..++..|. .++|++||+|++.++.++|++.. .++..+.+.|+.+.. +|+
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~g~ 78 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTY--RSKDDVLEAVKNLRYIGGG 78 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCC--CCHHHHHHHHHhCcCCCCC
Confidence 588888 89999999999999999999996 46799999999999999999763 457888999999987 788
Q ss_pred CChHHHHHHHHHHHHhc---cCCCCCCEEEEccCCCCcchhh--h-c-ccccccEEEE
Q 009657 337 ADPIEGLKKGIKILEDR---AHKNPQSCILHLSDTPTRTYHA--I-N-LQVPFPVHRF 387 (529)
Q Consensus 337 Tni~~gL~~A~~~l~~~---~~~n~v~~IILLTDG~~~~~~~--~-~-~~~~v~I~Tf 387 (529)
|+++.||..|++++... ..++..+.|||+|||.++.... . . .+.+|.|+++
T Consensus 79 T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~i 136 (164)
T cd01472 79 TNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAV 136 (164)
T ss_pred chHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 99999999999999863 2345567899999998753211 1 1 2467888887
No 13
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.59 E-value=1.4e-14 Score=137.99 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=98.0
Q ss_pred eeEEEE----ecCCcch-HHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcc----c
Q 009657 265 TDLVLV----ASPNGPH-LRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRL----F 332 (529)
Q Consensus 265 ~DLV~V----GSM~G~k-L~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L----~ 332 (529)
+|++|| |||.+.+ ++.+|+++..+++.|. ++.|++||+|++.++.++|++.....++..++..++.+ .
T Consensus 1 ~Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~ 80 (186)
T cd01471 1 LDLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYY 80 (186)
T ss_pred CcEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcC
Confidence 588888 8999887 9999999999999885 46699999999999999999876555676644444433 5
Q ss_pred cCCCCChHHHHHHHHHHHHhc--cCCCCCCEEEEccCCCCcchhh-h---c--ccccccEEEEeee
Q 009657 333 YMGQADPIEGLKKGIKILEDR--AHKNPQSCILHLSDTPTRTYHA-I---N--LQVPFPVHRFHVG 390 (529)
Q Consensus 333 a~GgTni~~gL~~A~~~l~~~--~~~n~v~~IILLTDG~~~~~~~-~---~--~~~~v~I~TfgvG 390 (529)
++|+|++..||+.|.+.+... ..++..+.|||+|||.++.... + + ...++.|++||+|
T Consensus 81 ~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~l~~~gv~v~~igiG 146 (186)
T cd01471 81 PNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARKLRERGVIIAVLGVG 146 (186)
T ss_pred CCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHHHHHCCCEEEEEEee
Confidence 789999999999999999763 2345667899999998765321 1 1 2557888988443
No 14
>PRK13685 hypothetical protein; Provisional
Probab=99.58 E-value=2e-14 Score=149.59 Aligned_cols=126 Identities=15% Similarity=0.216 Sum_probs=104.2
Q ss_pred CCceeEEEE----ecCCc-----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc
Q 009657 262 QPATDLVLV----ASPNG-----PHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF 332 (529)
Q Consensus 262 r~P~DLV~V----GSM~G-----~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~ 332 (529)
+.+.++|+| |||.+ +||+.+|+++..+++.|+++|+++||+|++++.++.|++ .+++.+..+|+.|.
T Consensus 86 ~~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p~t----~d~~~l~~~l~~l~ 161 (326)
T PRK13685 86 RNRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVSPT----TNREATKNAIDKLQ 161 (326)
T ss_pred CCCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCCCC----CCHHHHHHHHHhCC
Confidence 567788888 89986 699999999999999999999999999999999999986 36889999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhc------cCCCCCCEEEEccCCCCcchh----------hhc--ccccccEEEEeeee
Q 009657 333 YMGQADPIEGLKKGIKILEDR------AHKNPQSCILHLSDTPTRTYH----------AIN--LQVPFPVHRFHVGF 391 (529)
Q Consensus 333 a~GgTni~~gL~~A~~~l~~~------~~~n~v~~IILLTDG~~~~~~----------~~~--~~~~v~I~TfgvGf 391 (529)
++|+|++++||..|++.+++. ......+.|||+|||.++... ..+ .+.+|+||++|+|-
T Consensus 162 ~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~ 238 (326)
T PRK13685 162 LADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGT 238 (326)
T ss_pred CCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECC
Confidence 999999999999999998742 122345789999999876321 111 25689999995543
No 15
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.56 E-value=3.6e-14 Score=135.42 Aligned_cols=125 Identities=22% Similarity=0.236 Sum_probs=90.9
Q ss_pred CceeEEEE----ecCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCC
Q 009657 263 PATDLVLV----ASPNGPHLRLLKQSMALVVFSL-RPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQA 337 (529)
Q Consensus 263 ~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L-~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgT 337 (529)
.++||+|| |||.+... ..++.++.+++.| .++||++||+|++.++.++|++.... ...++.+.|+.+.++|+|
T Consensus 3 ~~~Dvv~llD~SgSm~~~~~-~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~~~~-~~~~~l~~l~~~~~~g~T 80 (185)
T cd01474 3 GHFDLYFVLDKSGSVAANWI-EIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTDDSS-AIIKGLEVLKKVTPSGQT 80 (185)
T ss_pred CceeEEEEEeCcCchhhhHH-HHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccccHH-HHHHHHHHHhccCCCCCC
Confidence 57899999 89987543 3446666666654 57899999999999999999987543 333444457788889999
Q ss_pred ChHHHHHHHHHHHHhccC--CCCCCEEEEccCCCCc--ch-hhh---c--ccccccEEEEee
Q 009657 338 DPIEGLKKGIKILEDRAH--KNPQSCILHLSDTPTR--TY-HAI---N--LQVPFPVHRFHV 389 (529)
Q Consensus 338 ni~~gL~~A~~~l~~~~~--~n~v~~IILLTDG~~~--~~-~~~---~--~~~~v~I~Tfgv 389 (529)
++++||+.|++.+..... +...+.|||||||+++ .. ... + ...++.|+++|+
T Consensus 81 ~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv 142 (185)
T cd01474 81 YIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGV 142 (185)
T ss_pred cHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEee
Confidence 999999999998854222 2234789999999883 22 111 1 256899999844
No 16
>PF12034 DUF3520: Domain of unknown function (DUF3520); InterPro: IPR021908 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 180 amino acids in length. This domain is found associated with PF00092 from PFAM.
Probab=99.56 E-value=2.8e-15 Score=142.20 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=92.7
Q ss_pred hhceeeeeEEEEEee-----------------------CCceEEcCCcCCCcEEEEEEEe---C----------------
Q 009657 411 LLGGNVQEIQLRIGE-----------------------EARIIRLGELRGGEERRILLDL---G---------------- 448 (529)
Q Consensus 411 ~l~~va~dv~l~i~~-----------------------~~~~v~lGdL~age~r~~L~el---~---------------- 448 (529)
++.+||+||||||+| +++.|+.|||++||++++|||| +
T Consensus 2 tL~tiAkDVKiQVEFNP~~V~~YRLIGYENR~L~~EDF~nD~vDAGEIGAGHsVTALYEi~p~g~~~~~~~~lkY~~~~~ 81 (183)
T PF12034_consen 2 TLFTIAKDVKIQVEFNPAQVKEYRLIGYENRLLADEDFNNDKVDAGEIGAGHSVTALYEIVPAGSKGEVVDDLKYQDNEA 81 (183)
T ss_pred ccchhhhhheEEEEECHHHhhHHhhcchhhcccccccccCccccccccCCCCEEEEEEEEEECCCCcccccccccccccc
Confidence 577899999999975 4789999999999999999999 1
Q ss_pred -----CeeeEEEEEEEecCCcceeeeeCcee----eccccccccccccc--ccccCcccccccCcccCcCCCCCCChHHH
Q 009657 449 -----ECEDVRVEYSYVEGGIDECIRTGETL----VNIEDKREASNERI--EPVSGTDVSIIGGRTSSVESWDYHDPYMA 517 (529)
Q Consensus 449 -----~~~~~~v~~~Y~dp~~~e~~~~~~~~----~~~~~~~~~~r~~a--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 517 (529)
..++++|++|||+|.+.++......+ ..+++.++++||++ ++||+ +|||++|.+..+|+ ++
T Consensus 82 ~~~~~~~el~tvklRYK~P~~~~s~l~~~~v~~~~~~~~~~s~d~rfAaaVA~fg~---~Lr~s~y~~~~~~~-----~v 153 (183)
T PF12034_consen 82 APASNSGELATVKLRYKDPDGDKSRLIEQPVADASSSFAQASDDFRFAAAVAAFGM---LLRGSEYKGSASYD-----DV 153 (183)
T ss_pred CCCCCCCceEEEEEEeeCCCCCccEEEEEeecccccccccCCcchhHHHHHHHHHH---HhcCCCCCCCCCHH-----HH
Confidence 35789999999999999996443333 46789999999999 88997 79999998878888 89
Q ss_pred HHHHhHhcC
Q 009657 518 RRWAKHLHG 526 (529)
Q Consensus 518 ~~~a~~~~~ 526 (529)
..||+...|
T Consensus 154 ~~la~~~~g 162 (183)
T PF12034_consen 154 LELARGAKG 162 (183)
T ss_pred HHHHHhccC
Confidence 999988766
No 17
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.53 E-value=7.3e-14 Score=155.13 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=96.5
Q ss_pred cCCCceeEEEE----ecCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCC-eEEeecCcccCHHhHHHHHHHHhcccc
Q 009657 260 AHQPATDLVLV----ASPNGPHLRLLKQSMALVVFS-LRPNDRLAIVTYSSA-AARVFPLKRMTSYGKRMALQVIDRLFY 333 (529)
Q Consensus 260 ~~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~-L~~~DrlsIVtFss~-a~~l~pl~~mt~~~k~~a~~~I~~L~a 333 (529)
..+.+.+++|| |||.+.||..+|.|+..++.. +.+.|+|+||+|++. +.+++|+++ +...+++.|+.|.+
T Consensus 397 ~~~~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~----~~~~~~~~L~~l~~ 472 (584)
T PRK13406 397 KQRSETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTR----SLVRAKRSLAGLPG 472 (584)
T ss_pred hccCCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCc----CHHHHHHHHhcCCC
Confidence 45788999998 999999999999999988855 689999999999765 899999876 56778899999999
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc
Q 009657 334 MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 334 ~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~ 372 (529)
+|+|+|+.||..|+++++....++..+.|||||||.+|.
T Consensus 473 gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~ 511 (584)
T PRK13406 473 GGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANI 511 (584)
T ss_pred CCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCC
Confidence 999999999999999998876667788999999998863
No 18
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.50 E-value=3.8e-13 Score=127.75 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=81.8
Q ss_pred ecCCcc-hHHHHHHHHHHHHH-hcCCCCeEEEEEeCCC-eEEeecCcccCHHhHHHHHHHHhccccCCCCChHHHHHHHH
Q 009657 271 ASPNGP-HLRLLKQSMALVVF-SLRPNDRLAIVTYSSA-AARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGLKKGI 347 (529)
Q Consensus 271 GSM~G~-kL~l~K~Am~~vi~-~L~~~DrlsIVtFss~-a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL~~A~ 347 (529)
|||.+. ||+.+|+++..++. .+.++|+++||+|++. +..++|++. ++..+...|+.+.++|+|++..||..|+
T Consensus 11 gSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t~----~~~~~~~~l~~l~~~G~T~l~~aL~~a~ 86 (178)
T cd01451 11 GSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTR----SVELAKRRLARLPTGGGTPLAAGLLAAY 86 (178)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCCC----CHHHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 899976 99999999998886 5688999999999975 777788763 5667888999999999999999999999
Q ss_pred HHHH-hccCCCCCCEEEEccCCCCc
Q 009657 348 KILE-DRAHKNPQSCILHLSDTPTR 371 (529)
Q Consensus 348 ~~l~-~~~~~n~v~~IILLTDG~~~ 371 (529)
+.++ ..+.++..+.|||||||.++
T Consensus 87 ~~l~~~~~~~~~~~~ivliTDG~~~ 111 (178)
T cd01451 87 ELAAEQARDPGQRPLIVVITDGRAN 111 (178)
T ss_pred HHHHHHhcCCCCceEEEEECCCCCC
Confidence 9983 22333456799999999876
No 19
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.49 E-value=3.5e-13 Score=130.42 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=95.9
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhcCC---------CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHH
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSLRP---------NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVI 328 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~---------~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I 328 (529)
..++||||| +||...+++.+|+.+..++..+.- ++|++||+|++.+++.+||+.. ..+..+.++|
T Consensus 17 ~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~--~~~~~~~~ai 94 (193)
T cd01477 17 NLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDL--QSFDDLYSQI 94 (193)
T ss_pred cceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccc--cCHHHHHHHH
Confidence 578999999 799888999999999888877653 4799999999999999999754 3456666666
Q ss_pred h----ccccCCCCChHHHHHHHHHHHHhc--c-CCCCCCEEEEccCCCCcch--h--hh--c-ccccccEEEEee
Q 009657 329 D----RLFYMGQADPIEGLKKGIKILEDR--A-HKNPQSCILHLSDTPTRTY--H--AI--N-LQVPFPVHRFHV 389 (529)
Q Consensus 329 ~----~L~a~GgTni~~gL~~A~~~l~~~--~-~~n~v~~IILLTDG~~~~~--~--~~--~-~~~~v~I~Tfgv 389 (529)
+ .+..+|||+++.||+.|.+++... . .++..+.|||||||..++. + .. . .+.||.|+|+||
T Consensus 95 ~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGi 169 (193)
T cd01477 95 QGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAF 169 (193)
T ss_pred HHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 6 445678999999999999999753 2 2334556999999744321 1 11 1 267899999933
No 20
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.48 E-value=5.1e-13 Score=125.02 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=97.9
Q ss_pred eeEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc-cCCC
Q 009657 265 TDLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF-YMGQ 336 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~-a~Gg 336 (529)
.|++|| |||.+.++..+|+++..++..|. +++|++||+|++.++..+|++..+ ++..+.+.|+.+. .+|+
T Consensus 1 ~Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~~--~~~~l~~~l~~~~~~~g~ 78 (164)
T cd01482 1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYT--SKEDVLAAIKNLPYKGGN 78 (164)
T ss_pred CCEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCCC--CHHHHHHHHHhCcCCCCC
Confidence 478888 89998999999999999999884 679999999999999999987543 4778899999887 7899
Q ss_pred CChHHHHHHHHHHHHhc---cCCCCCCEEEEccCCCCcch-hhh---cccccccEEEEee
Q 009657 337 ADPIEGLKKGIKILEDR---AHKNPQSCILHLSDTPTRTY-HAI---NLQVPFPVHRFHV 389 (529)
Q Consensus 337 Tni~~gL~~A~~~l~~~---~~~n~v~~IILLTDG~~~~~-~~~---~~~~~v~I~Tfgv 389 (529)
|+++.||+.+.+.+... ..++....|||+|||.+++. ... -...+|.|+++|+
T Consensus 79 T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~ 138 (164)
T cd01482 79 TRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGV 138 (164)
T ss_pred ChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence 99999999999865432 12345567999999988642 111 1256889999833
No 21
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.45 E-value=6.4e-13 Score=125.38 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=80.1
Q ss_pred ecCCc-chHHHHHHHHHHHHHhcCC-CCeEEEEEeCCCe--E---EeecCcccCHHhHHHHHHHHhccccCCCCChHHHH
Q 009657 271 ASPNG-PHLRLLKQSMALVVFSLRP-NDRLAIVTYSSAA--A---RVFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGL 343 (529)
Q Consensus 271 GSM~G-~kL~l~K~Am~~vi~~L~~-~DrlsIVtFss~a--~---~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL 343 (529)
|||.+ .||+.+|+++..+++.|.. +|+++||+|++.+ . .+++....+......+...|+.+.++|+|+++.||
T Consensus 11 gSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T~~~~al 90 (174)
T cd01454 11 GSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRLAALSPGGNTRDGAAI 90 (174)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHHHccCCCCCCcHHHHH
Confidence 89998 6999999999999999985 9999999999984 2 23333233332234677889999999999999999
Q ss_pred HHHHHHHHhccCCCCCCEEEEccCCCCcc
Q 009657 344 KKGIKILEDRAHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 344 ~~A~~~l~~~~~~n~v~~IILLTDG~~~~ 372 (529)
+.|++.+.++. ...+.|||+|||.++.
T Consensus 91 ~~a~~~l~~~~--~~~~~iiliTDG~~~~ 117 (174)
T cd01454 91 RHAAERLLARP--EKRKILLVISDGEPND 117 (174)
T ss_pred HHHHHHHhcCC--CcCcEEEEEeCCCcCc
Confidence 99999998753 3456799999998864
No 22
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.44 E-value=2e-12 Score=120.16 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=92.8
Q ss_pred eeEEEE----ecCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCC--CeEEeecCcccCHHhHHHHHHHHhcccc-C
Q 009657 265 TDLVLV----ASPNGPHLRLLKQSMALVVFSLRP---NDRLAIVTYSS--AAARVFPLKRMTSYGKRMALQVIDRLFY-M 334 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~---~DrlsIVtFss--~a~~l~pl~~mt~~~k~~a~~~I~~L~a-~ 334 (529)
+|++|| |||.+ +++..|+.++.++..|.. .+|++||.|++ .+.+.++++.. .++..+.+.|+.|.. +
T Consensus 1 ldv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~--~~~~~l~~~i~~l~~~g 77 (163)
T cd01476 1 LDLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKH--NDGEELLEKVDNLRFIG 77 (163)
T ss_pred CCEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCC--CCHHHHHHHHHhCccCC
Confidence 478887 89986 688899999999999875 89999999999 67778888654 357789999999985 7
Q ss_pred CCCChHHHHHHHHHHHHhc--cCCCCCCEEEEccCCCCcchh-hh--c-cc-ccccEEEE
Q 009657 335 GQADPIEGLKKGIKILEDR--AHKNPQSCILHLSDTPTRTYH-AI--N-LQ-VPFPVHRF 387 (529)
Q Consensus 335 GgTni~~gL~~A~~~l~~~--~~~n~v~~IILLTDG~~~~~~-~~--~-~~-~~v~I~Tf 387 (529)
|+|+++.||+.|++++.+. ..++..+.|||+|||.++... .. . .. .++.|+++
T Consensus 78 g~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~~l~~~~~v~v~~v 137 (163)
T cd01476 78 GTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPEKQARILRAVPNIETFAV 137 (163)
T ss_pred CCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCchHHHHHHHhhcCCCEEEEE
Confidence 8899999999999999632 123444789999999875321 11 1 13 56777777
No 23
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.43 E-value=2.1e-12 Score=127.22 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=97.5
Q ss_pred CceeEEEE----ecCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc-C
Q 009657 263 PATDLVLV----ASPNGPHLRLLKQSMALVVFSLRP---NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY-M 334 (529)
Q Consensus 263 ~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~---~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a-~ 334 (529)
.|+||||| |||.+.+++.+|+.+..+++.|.. .+||+||+|++.+++++||+... ++..+.++|+.+.. +
T Consensus 1 ~~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~--~~~~l~~~i~~i~~~~ 78 (224)
T cd01475 1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFK--SKADLKRAVRRMEYLE 78 (224)
T ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccC--CHHHHHHHHHhCcCCC
Confidence 37999999 899999999999999999999853 57999999999999999998653 46778888888875 6
Q ss_pred CCCChHHHHHHHHHHHHhc---cCCCC---CCEEEEccCCCCcchh-hh---cccccccEEEEeee
Q 009657 335 GQADPIEGLKKGIKILEDR---AHKNP---QSCILHLSDTPTRTYH-AI---NLQVPFPVHRFHVG 390 (529)
Q Consensus 335 GgTni~~gL~~A~~~l~~~---~~~n~---v~~IILLTDG~~~~~~-~~---~~~~~v~I~TfgvG 390 (529)
|+|+++.||+.|++.+-.. ..++. ...|||+|||..++.. .. ....+|.|+++|+|
T Consensus 79 ~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG 144 (224)
T cd01475 79 TGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVG 144 (224)
T ss_pred CCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCC
Confidence 7899999999999865321 11222 4567999999875421 11 12567999998443
No 24
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.42 E-value=2.5e-12 Score=117.52 Aligned_cols=121 Identities=20% Similarity=0.259 Sum_probs=99.7
Q ss_pred eeEEEE----ecCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccC-C-
Q 009657 265 TDLVLV----ASPNGPHLRLLKQSMALVVFSLRP---NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYM-G- 335 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~---~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~-G- 335 (529)
+|++|| |||.+.+++.+|+++..++..|.. +|+++||+|++.+..++++.... ++..+.+.|+.+... |
T Consensus 1 ~di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~ 78 (161)
T cd01450 1 LDIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYK--SKDDLLKAVKNLKYLGGG 78 (161)
T ss_pred CcEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCC--CHHHHHHHHHhcccCCCC
Confidence 478877 899998999999999999999864 89999999999999999987664 578888899988754 3
Q ss_pred CCChHHHHHHHHHHHHhcc--CCCCCCEEEEccCCCCcchh---hh-c--ccccccEEEE
Q 009657 336 QADPIEGLKKGIKILEDRA--HKNPQSCILHLSDTPTRTYH---AI-N--LQVPFPVHRF 387 (529)
Q Consensus 336 gTni~~gL~~A~~~l~~~~--~~n~v~~IILLTDG~~~~~~---~~-~--~~~~v~I~Tf 387 (529)
+|++.+||..|++.+.... ..+..+.|||+|||.++... .. . .+.++.|+++
T Consensus 79 ~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i 138 (161)
T cd01450 79 GTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVV 138 (161)
T ss_pred CccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEE
Confidence 8999999999999998764 34677789999999876532 11 1 2457999998
No 25
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.42 E-value=2.6e-12 Score=118.21 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=90.7
Q ss_pred eEEEE----ecCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCCChH
Q 009657 266 DLVLV----ASPNGPHLRLLKQSMALVVFSLR-PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPI 340 (529)
Q Consensus 266 DLV~V----GSM~G~kL~l~K~Am~~vi~~L~-~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~ 340 (529)
|++++ |||.+.|+..+|.++..++..+. ++|+++||.|++.. ...++. ...+...+.+.+..+.++|+|++.
T Consensus 2 ~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~-~~~~~~--~~~~~~~~~~~l~~~~~~ggT~l~ 78 (152)
T cd01462 2 PVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEF-QTKIVD--KTDDLEEPVEFLSGVQLGGGTDIN 78 (152)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCc-eEEecC--CcccHHHHHHHHhcCCCCCCcCHH
Confidence 45555 89999999999999999988886 48999999999993 333332 234567778888888999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEccCCCCcc-hhhh------cccccccEEEEeeee
Q 009657 341 EGLKKGIKILEDRAHKNPQSCILHLSDTPTRT-YHAI------NLQVPFPVHRFHVGF 391 (529)
Q Consensus 341 ~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~-~~~~------~~~~~v~I~TfgvGf 391 (529)
.+|..+++.+.... .....|||+|||.+.. .... ....++.||+||+|.
T Consensus 79 ~al~~a~~~l~~~~--~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~ 134 (152)
T cd01462 79 KALRYALELIERRD--PRKADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGD 134 (152)
T ss_pred HHHHHHHHHHHhcC--CCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecC
Confidence 99999999987642 2345799999995432 1111 124469999994433
No 26
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.41 E-value=2.2e-12 Score=122.60 Aligned_cols=124 Identities=18% Similarity=0.241 Sum_probs=98.9
Q ss_pred eeEEEE----ecCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc-cCCC
Q 009657 265 TDLVLV----ASPNGPHLRLLKQSMALVVFSLRP---NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF-YMGQ 336 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~---~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~-a~Gg 336 (529)
+||+|| |||.+..++.+|+.+..+++.|.. ++|++||+|++.+++.++++... .+..+.++|+.+. .+|+
T Consensus 1 ~Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~ 78 (177)
T cd01469 1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYR--TKEEPLSLVKHISQLLGL 78 (177)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccC--CHHHHHHHHHhCccCCCC
Confidence 589999 799988999999999999999974 68999999999999999998543 4567788888875 5788
Q ss_pred CChHHHHHHHHHHHHh---ccCCCCCCEEEEccCCCCcchhh----hc--ccccccEEEEeee
Q 009657 337 ADPIEGLKKGIKILED---RAHKNPQSCILHLSDTPTRTYHA----IN--LQVPFPVHRFHVG 390 (529)
Q Consensus 337 Tni~~gL~~A~~~l~~---~~~~n~v~~IILLTDG~~~~~~~----~~--~~~~v~I~TfgvG 390 (529)
|+++.||+.|.+.+-. ...++..+.|||||||..++... +. ...++.|+++|+|
T Consensus 79 T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~~~~~~k~~gv~v~~Vgvg 141 (177)
T cd01469 79 TNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKDVIPQAEREGIIRYAIGVG 141 (177)
T ss_pred ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHHHHHHHHHCCcEEEEEEec
Confidence 9999999999998732 22345666899999998865321 11 2468999999554
No 27
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.40 E-value=2.4e-12 Score=124.30 Aligned_cols=126 Identities=20% Similarity=0.246 Sum_probs=98.0
Q ss_pred eeEEEE----ecCCcchHH-HHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc----
Q 009657 265 TDLVLV----ASPNGPHLR-LLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF---- 332 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~-l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~---- 332 (529)
.||+|| +||...... .+|..++.+++.|. .++|++||.|++.++..+|++.-...++..++.+|+.+.
T Consensus 1 ~Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~ 80 (192)
T cd01473 1 YDLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYR 80 (192)
T ss_pred CcEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccC
Confidence 489988 789776666 58999999999986 468999999999999999998655566888888888774
Q ss_pred cCCCCChHHHHHHHHHHHHhcc--CCCCCCEEEEccCCCCcchh--hh------cccccccEEEEeee
Q 009657 333 YMGQADPIEGLKKGIKILEDRA--HKNPQSCILHLSDTPTRTYH--AI------NLQVPFPVHRFHVG 390 (529)
Q Consensus 333 a~GgTni~~gL~~A~~~l~~~~--~~n~v~~IILLTDG~~~~~~--~~------~~~~~v~I~TfgvG 390 (529)
.+|+|+++.||+.|.+.+.... .++..+.+||||||..++.. .+ ..+.||.|+++|||
T Consensus 81 ~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG 148 (192)
T cd01473 81 SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVG 148 (192)
T ss_pred CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEec
Confidence 4899999999999999886432 22335679999999876421 11 12678999999665
No 28
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.38 E-value=5.5e-12 Score=129.05 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=96.6
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc---
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFS-LRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY--- 333 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~-L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a--- 333 (529)
..|++++|| |||.+ ++..+|+++..+++. |+++|+++||.|++.+..+.+++. ++..+.++|+.|.+
T Consensus 51 ~~p~~vvlvlD~SgSM~~-~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t~----~~~~l~~~l~~l~~~~~ 125 (296)
T TIGR03436 51 DLPLTVGLVIDTSGSMRN-DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFTS----DPRLLEAALNRLKPPLR 125 (296)
T ss_pred CCCceEEEEEECCCCchH-HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCCC----CHHHHHHHHHhccCCCc
Confidence 468999998 89976 799999999999987 899999999999999999888753 57789999999987
Q ss_pred ------------CCCCChHHHHHHHHH-HHHhccCC-CCCCEEEEccCCCCcchh----hh-c--ccccccEEEEeee
Q 009657 334 ------------MGQADPIEGLKKGIK-ILEDRAHK-NPQSCILHLSDTPTRTYH----AI-N--LQVPFPVHRFHVG 390 (529)
Q Consensus 334 ------------~GgTni~~gL~~A~~-~l~~~~~~-n~v~~IILLTDG~~~~~~----~~-~--~~~~v~I~TfgvG 390 (529)
+|+|+|++||..|.. ++...... ...+.|||+|||.++... .+ + ...+|.||+|++|
T Consensus 126 ~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~ 203 (296)
T TIGR03436 126 TDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDAR 203 (296)
T ss_pred cccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccC
Confidence 899999999987754 44433211 124679999999876421 11 1 2567999999543
No 29
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.38 E-value=1.1e-11 Score=116.90 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=91.4
Q ss_pred ceeEEEE----ecCCc------chHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc-
Q 009657 264 ATDLVLV----ASPNG------PHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF- 332 (529)
Q Consensus 264 P~DLV~V----GSM~G------~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~- 332 (529)
.+|+||| +||.. .|++.+|+++..++..+ ++|+++||.|++.+..++|++. ++..+...++.|.
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~~~~~----~~~~~~~~l~~l~~ 76 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLTL----DRESLKELLEDIKI 76 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEEcCCeeeccCCCc----cHHHHHHHHHHhhh
Confidence 4788888 89974 47999999998888764 8999999999999998888763 3445555555554
Q ss_pred --cCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchh----h-hc--ccccccEEEEeee
Q 009657 333 --YMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYH----A-IN--LQVPFPVHRFHVG 390 (529)
Q Consensus 333 --a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~----~-~~--~~~~v~I~TfgvG 390 (529)
++|+|+++.||..|++++.+.. ...+.|||+|||.++... . .. ...+|+||++++|
T Consensus 77 ~~~~g~T~l~~al~~a~~~l~~~~--~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig 141 (180)
T cd01467 77 GLAGQGTAIGDAIGLAIKRLKNSE--AKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVG 141 (180)
T ss_pred cccCCCCcHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEec
Confidence 7899999999999999997643 345789999999875321 1 11 2568999999443
No 30
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.37 E-value=7e-12 Score=115.41 Aligned_cols=115 Identities=23% Similarity=0.359 Sum_probs=91.2
Q ss_pred eEEEE----ecCCcc-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc---
Q 009657 266 DLVLV----ASPNGP-----HLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY--- 333 (529)
Q Consensus 266 DLV~V----GSM~G~-----kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a--- 333 (529)
|+||| |||.+. +++.+|.++..+++.+ ++||++||.|++.+....|++ .++..+++.++.+..
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~~f~~~~~~~~~~t----~~~~~~~~~l~~~~~~~~ 75 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANL-PGDRVGLVSFSDSSRTLSPLT----SDKDELKNALNKLSPQGM 75 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHH-TTSEEEEEEESTSCEEEEEEE----SSHHHHHHHHHTHHHHG-
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHC-CCCEEEEEEeccccccccccc----ccHHHHHHHhhccccccc
Confidence 67887 899876 7999999999999997 588999999999999988886 367778888887764
Q ss_pred -CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcch--hhhc--ccccccEEEE
Q 009657 334 -MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTY--HAIN--LQVPFPVHRF 387 (529)
Q Consensus 334 -~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~--~~~~--~~~~v~I~Tf 387 (529)
+|+|++..||..|.+++.... ...+.|||+|||.++.. ..++ .+.++.|+++
T Consensus 76 ~~~~t~~~~al~~a~~~~~~~~--~~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v 132 (172)
T PF13519_consen 76 PGGGTNLYDALQEAAKMLASSD--NRRRAIVLITDGEDNSSDIEAAKALKQQGITIYTV 132 (172)
T ss_dssp -SSS--HHHHHHHHHHHHHC-S--SEEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEE
T ss_pred CccCCcHHHHHHHHHHHHHhCC--CCceEEEEecCCCCCcchhHHHHHHHHcCCeEEEE
Confidence 799999999999999998753 45678999999987631 1111 2677899998
No 31
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.35 E-value=6.3e-12 Score=120.55 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=92.0
Q ss_pred eeEEEE----ecCCc-----chHHHHHHHHHHHHHhc---CCCCeEEEEEe-CCCeEEeecCcccCHHhHHHHHHHHhcc
Q 009657 265 TDLVLV----ASPNG-----PHLRLLKQSMALVVFSL---RPNDRLAIVTY-SSAAARVFPLKRMTSYGKRMALQVIDRL 331 (529)
Q Consensus 265 ~DLV~V----GSM~G-----~kL~l~K~Am~~vi~~L---~~~DrlsIVtF-ss~a~~l~pl~~mt~~~k~~a~~~I~~L 331 (529)
.|+|++ +||.. +||+.+|+++..+++.+ +|+|+++||+| ++.++++.|+|.- ...+...++.+
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D----~~~~~~~L~~~ 79 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGN----PRKHIQALKTA 79 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCC----HHHHHHHhhcc
Confidence 578888 79973 69999999999999865 79999999999 8999999999752 33566666665
Q ss_pred -ccCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc---hhhh---cccccccEEEEee
Q 009657 332 -FYMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT---YHAI---NLQVPFPVHRFHV 389 (529)
Q Consensus 332 -~a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~---~~~~---~~~~~v~I~Tfgv 389 (529)
..+|+|++.+||+.|++.+...........|||+|||.+.+ ...+ ..+.+|.|+++|+
T Consensus 80 ~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~Igi 144 (183)
T cd01453 80 RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGL 144 (183)
T ss_pred cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEe
Confidence 66788999999999999997542222334688889987643 2121 1256899999933
No 32
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.34 E-value=8.2e-12 Score=139.51 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=90.3
Q ss_pred CCCceeEEEE----ecCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCC-eEEeecCcccCHHhHHHHHHHHhccccC
Q 009657 261 HQPATDLVLV----ASPNGPHLRLLKQSMALVVFS-LRPNDRLAIVTYSSA-AARVFPLKRMTSYGKRMALQVIDRLFYM 334 (529)
Q Consensus 261 ~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~-L~~~DrlsIVtFss~-a~~l~pl~~mt~~~k~~a~~~I~~L~a~ 334 (529)
.+....++|| |||.+.||..+|.++..++.. +.+.|+|+||+|++. +.+++|+++ ++..+.+.|+.|.++
T Consensus 404 ~~~~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t~----~~~~~~~~L~~l~~g 479 (589)
T TIGR02031 404 RKSGRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSR----SVEQAKRRLDVLPGG 479 (589)
T ss_pred cccCceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCCC----CHHHHHHHHhcCCCC
Confidence 3455667676 999999999999999998875 568999999999866 477778753 566778899999999
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCc
Q 009657 335 GQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTR 371 (529)
Q Consensus 335 GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~ 371 (529)
|+|+++.||..|++.+.....++..+.|||||||.+|
T Consensus 480 GgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~n 516 (589)
T TIGR02031 480 GGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGN 516 (589)
T ss_pred CCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCC
Confidence 9999999999999999876555667799999999876
No 33
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.28 E-value=6.2e-11 Score=109.59 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=98.2
Q ss_pred ceeEEEE----ecCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc--cC
Q 009657 264 ATDLVLV----ASPNGPHLRLLKQSMALVVFSLRP---NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF--YM 334 (529)
Q Consensus 264 P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~---~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~--a~ 334 (529)
|+|+++| +||.+.+++.+|.++..++..+.. +++++||+|++....+.++. ...+...+...++.+. .+
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~ 78 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLN--DSRSKDALLEALASLSYKLG 78 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEccc--ccCCHHHHHHHHHhcCCCCC
Confidence 6788888 899999999999999999999987 89999999999998888874 2346788999999999 48
Q ss_pred CCCChHHHHHHHHHHHHhccC---CCCCCEEEEccCCCCcch---hh-hc--ccccccEEEE
Q 009657 335 GQADPIEGLKKGIKILEDRAH---KNPQSCILHLSDTPTRTY---HA-IN--LQVPFPVHRF 387 (529)
Q Consensus 335 GgTni~~gL~~A~~~l~~~~~---~n~v~~IILLTDG~~~~~---~~-~~--~~~~v~I~Tf 387 (529)
|+|++..+|+.+++.+..... .+....||++|||.+... .. +. .+.++.|+.|
T Consensus 79 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~~~i~i~~i 140 (177)
T smart00327 79 GGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKRSGVKVFVV 140 (177)
T ss_pred CCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEE
Confidence 999999999999999874322 223568999999988752 11 11 1445888887
No 34
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.28 E-value=1.3e-12 Score=96.51 Aligned_cols=44 Identities=36% Similarity=1.007 Sum_probs=37.5
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR 109 (529)
+.|+||+++|. .++.+..++|+|.||..||..|++... +||+||
T Consensus 1 d~C~IC~~~~~------~~~~~~~l~C~H~fh~~Ci~~~~~~~~-~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFE------DGEKVVKLPCGHVFHRSCIKEWLKRNN-SCPVCR 44 (44)
T ss_dssp -CETTTTCBHH------TTSCEEEETTSEEEEHHHHHHHHHHSS-B-TTTH
T ss_pred CCCcCCChhhc------CCCeEEEccCCCeeCHHHHHHHHHhCC-cCCccC
Confidence 47999999997 457777888999999999999999855 999997
No 35
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.25 E-value=8.8e-11 Score=116.55 Aligned_cols=109 Identities=14% Similarity=0.269 Sum_probs=93.1
Q ss_pred cCCCceeEEEE----ecCCcc-hHHHHHHHHHHHH-HhcCCCCeEEEEEeC-CCeEEeecCcccCHHhHHHHHHHHhccc
Q 009657 260 AHQPATDLVLV----ASPNGP-HLRLLKQSMALVV-FSLRPNDRLAIVTYS-SAAARVFPLKRMTSYGKRMALQVIDRLF 332 (529)
Q Consensus 260 ~~r~P~DLV~V----GSM~G~-kL~l~K~Am~~vi-~~L~~~DrlsIVtFs-s~a~~l~pl~~mt~~~k~~a~~~I~~L~ 332 (529)
..|+...+||| |||.+. ||+.+|-++..++ +.-...|+++||+|. +++.+++|.|+ +.+.+.+.|..|.
T Consensus 74 ~~r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~----sv~~~~~~L~~l~ 149 (261)
T COG1240 74 EGRAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTS----SVELAERALERLP 149 (261)
T ss_pred ccCcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCcc----cHHHHHHHHHhCC
Confidence 44666777777 999987 8999999987665 455789999999999 78999999875 5778999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhccC--CCCCCEEEEccCCCCcc
Q 009657 333 YMGQADPIEGLKKGIKILEDRAH--KNPQSCILHLSDTPTRT 372 (529)
Q Consensus 333 a~GgTni~~gL~~A~~~l~~~~~--~n~v~~IILLTDG~~~~ 372 (529)
++|.|.|.+||++|++++..... ++....+|+||||..|.
T Consensus 150 ~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~ 191 (261)
T COG1240 150 TGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANV 191 (261)
T ss_pred CCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCC
Confidence 99999999999999999987665 34678899999998764
No 36
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.23 E-value=1e-10 Score=108.84 Aligned_cols=106 Identities=25% Similarity=0.303 Sum_probs=86.9
Q ss_pred eEEEE----ecCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHH-hcc-ccCCC
Q 009657 266 DLVLV----ASPNGPHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVI-DRL-FYMGQ 336 (529)
Q Consensus 266 DLV~V----GSM~G~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I-~~L-~a~Gg 336 (529)
||+|| +||.+.+++.+|+++..+++.| ..++|++||+|++.++.++++... .....++..+ ..+ ..+|+
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~g~ 78 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDY--QSKNDLLNAINDSIPSSGGG 78 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSH--SSHHHHHHHHHTTGGCCBSS
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccc--cccccccccccccccccchh
Confidence 78888 8999999999999999999965 578899999999999999988754 3456666666 444 46899
Q ss_pred CChHHHHHHHHHHHHhc---cCCCCCCEEEEccCCCCcch
Q 009657 337 ADPIEGLKKGIKILEDR---AHKNPQSCILHLSDTPTRTY 373 (529)
Q Consensus 337 Tni~~gL~~A~~~l~~~---~~~n~v~~IILLTDG~~~~~ 373 (529)
|+++.||+.|.+.+... ..++..+.|||+|||.++..
T Consensus 79 t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~ 118 (178)
T PF00092_consen 79 TNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDS 118 (178)
T ss_dssp B-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSH
T ss_pred hhHHHHHhhhhhcccccccccccccccceEEEEeecccCC
Confidence 99999999999998765 33456778999999988764
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1e-11 Score=128.37 Aligned_cols=50 Identities=34% Similarity=0.802 Sum_probs=44.7
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
..|+||||+|. .|+.++.++|+|.||..||++|+...+..||+||++...
T Consensus 230 ~~CaIClEdY~------~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYE------KGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccc------cCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 59999999998 788999999999999999999998766689999997543
No 38
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.21 E-value=1.3e-10 Score=127.03 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=98.6
Q ss_pred CCceeEEEE----ecCC-cchHHHHHHHHHHHHHhcCC-CC--eEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcc--
Q 009657 262 QPATDLVLV----ASPN-GPHLRLLKQSMALVVFSLRP-ND--RLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRL-- 331 (529)
Q Consensus 262 r~P~DLV~V----GSM~-G~kL~l~K~Am~~vi~~L~~-~D--rlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L-- 331 (529)
+..+||+|| |||. +..++.+|..+..++..|.- .| +|+||+|++.++.+++++.....+++.++.+|..|
T Consensus 40 ~~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~ 119 (576)
T PTZ00441 40 NEEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRK 119 (576)
T ss_pred cCCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHh
Confidence 467999999 7997 45578999999999999953 44 56669999999999999765444566676666644
Q ss_pred --ccCCCCChHHHHHHHHHHHHhcc-CCCCCCEEEEccCCCCcch-hhh---c--ccccccEEEEeeee
Q 009657 332 --FYMGQADPIEGLKKGIKILEDRA-HKNPQSCILHLSDTPTRTY-HAI---N--LQVPFPVHRFHVGF 391 (529)
Q Consensus 332 --~a~GgTni~~gL~~A~~~l~~~~-~~n~v~~IILLTDG~~~~~-~~~---~--~~~~v~I~TfgvGf 391 (529)
.++|+|++..||..+.+.+..+. ..+....|||||||.++.. ..+ + ...++.|++||||.
T Consensus 120 ~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~ 188 (576)
T PTZ00441 120 TYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQ 188 (576)
T ss_pred hccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCC
Confidence 57899999999999999887643 2355678999999987542 211 1 25689999996644
No 39
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.21 E-value=1.5e-10 Score=109.57 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=87.2
Q ss_pred CCCceeEEEE--ecCCcchHHHHHHHHHHHHHhcCC------CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc
Q 009657 261 HQPATDLVLV--ASPNGPHLRLLKQSMALVVFSLRP------NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF 332 (529)
Q Consensus 261 ~r~P~DLV~V--GSM~G~kL~l~K~Am~~vi~~L~~------~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~ 332 (529)
+|-|+-|++- |||.|+.|+.++..++.+++.|.. .-.++||+|++.|++..|++.+. .-.--.|.
T Consensus 2 rRlP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~-------nF~~p~L~ 74 (207)
T COG4245 2 RRLPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAA-------NFNPPILT 74 (207)
T ss_pred CCCCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHh-------hcCCCcee
Confidence 3778877776 999999999999999999999974 35899999999999999997531 11344688
Q ss_pred cCCCCChHHHHHHHHHHHHhccCC---C----CCCEEEEccCCCCcc
Q 009657 333 YMGQADPIEGLKKGIKILEDRAHK---N----PQSCILHLSDTPTRT 372 (529)
Q Consensus 333 a~GgTni~~gL~~A~~~l~~~~~~---n----~v~~IILLTDG~~~~ 372 (529)
++|||.+++||.+|.++++++..+ + -.+-|+|+|||.+++
T Consensus 75 a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD 121 (207)
T COG4245 75 AQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTD 121 (207)
T ss_pred cCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcch
Confidence 999999999999999999987442 2 345899999999975
No 40
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.19 E-value=7.8e-12 Score=102.57 Aligned_cols=51 Identities=39% Similarity=0.832 Sum_probs=39.0
Q ss_pred cccccccccccccCC----CCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccc
Q 009657 58 KNLCAICLEALSYSS----GGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~----~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR 109 (529)
.+.|+||++.|...- ..+++..+.+.+|||.||++||.+|++.++ +||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 456999999995321 112346778889999999999999999877 999998
No 41
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.12 E-value=4.3e-11 Score=100.00 Aligned_cols=57 Identities=26% Similarity=0.651 Sum_probs=48.0
Q ss_pred ccccccccccccccC----CCCCCCcceEeCCCCCcccHhHHHHHhhC--CCCcccccccccc
Q 009657 57 AKNLCAICLEALSYS----SGGSPGQAIFTAQCSHAFHFACISSNVRH--GSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~----~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~--~~~~CPlCR~~~~ 113 (529)
.++.|+||...|+.. .-+|++.++.+..|+|.||.+||.+|+.. .+..||+||+.|.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 478999999999842 44566778899999999999999999984 3469999999986
No 42
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.10 E-value=4.6e-10 Score=130.98 Aligned_cols=132 Identities=25% Similarity=0.320 Sum_probs=113.0
Q ss_pred cCCCceeEEEE----ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEee-----cCcccCHHhHHHHHHHHhc
Q 009657 260 AHQPATDLVLV----ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVF-----PLKRMTSYGKRMALQVIDR 330 (529)
Q Consensus 260 ~~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~-----pl~~mt~~~k~~a~~~I~~ 330 (529)
+.-.|+|+|++ |||.|.+++++|..|..+++.|++.|.|.|++|++.+.-+. ++.+.|-.||+.++++|+.
T Consensus 221 aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~~ 300 (1104)
T KOG2353|consen 221 AATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIET 300 (1104)
T ss_pred ccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHhh
Confidence 34578999988 89999999999999999999999999999999999998776 5778888999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHhccCCCC-------CCEEEEccCCCCcchhhh----cc-cccccEEEEeeee
Q 009657 331 LFYMGQADPIEGLKKGIKILEDRAHKNP-------QSCILHLSDTPTRTYHAI----NL-QVPFPVHRFHVGF 391 (529)
Q Consensus 331 L~a~GgTni~~gL~~A~~~l~~~~~~n~-------v~~IILLTDG~~~~~~~~----~~-~~~v~I~TfgvGf 391 (529)
|.+.|.|+...|++.|+++|.+...... ...|||+|||.+..+..+ +. ...|.|+||-||-
T Consensus 301 l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn~~~~~Vrvftflig~ 373 (1104)
T KOG2353|consen 301 LDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKEIFEKYNWPDKKVRVFTFLIGD 373 (1104)
T ss_pred hccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHHHHHhhccCCCceEEEEEEecc
Confidence 9999999999999999999997544322 247999999988776544 22 6778899986653
No 43
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.10 E-value=9.6e-10 Score=124.11 Aligned_cols=109 Identities=16% Similarity=0.280 Sum_probs=89.9
Q ss_pred cCCCceeEEEE----ecCCc-chHHHHHHHHHHHHH-hcCCCCeEEEEEeCC-CeEEeecCcccCHHhHHHHHHHHhccc
Q 009657 260 AHQPATDLVLV----ASPNG-PHLRLLKQSMALVVF-SLRPNDRLAIVTYSS-AAARVFPLKRMTSYGKRMALQVIDRLF 332 (529)
Q Consensus 260 ~~r~P~DLV~V----GSM~G-~kL~l~K~Am~~vi~-~L~~~DrlsIVtFss-~a~~l~pl~~mt~~~k~~a~~~I~~L~ 332 (529)
..|....++|| |||.+ .||..+|.++..++. .+..+|+|+||+|++ .+.+++|+++ ++..+...|+.|.
T Consensus 461 ~~r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t~----~~~~~~~~L~~l~ 536 (633)
T TIGR02442 461 AGRAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTS----SVELAARRLEELP 536 (633)
T ss_pred cCCCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCCC----CHHHHHHHHHhCC
Confidence 45677777777 89987 599999999887764 568899999999986 5888888863 4667778999999
Q ss_pred cCCCCChHHHHHHHHHHHHhc--cCCCCCCEEEEccCCCCcc
Q 009657 333 YMGQADPIEGLKKGIKILEDR--AHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 333 a~GgTni~~gL~~A~~~l~~~--~~~n~v~~IILLTDG~~~~ 372 (529)
++|+|+|..||..|++++... ..++....|||+|||..|.
T Consensus 537 ~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~ 578 (633)
T TIGR02442 537 TGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANV 578 (633)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCC
Confidence 999999999999999999853 3345667899999998754
No 44
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.10 E-value=2e-09 Score=96.63 Aligned_cols=121 Identities=26% Similarity=0.338 Sum_probs=98.4
Q ss_pred eeEEEE----ecCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc--cCC
Q 009657 265 TDLVLV----ASPNGPHLRLLKQSMALVVFSLRP---NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF--YMG 335 (529)
Q Consensus 265 ~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~---~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~--a~G 335 (529)
+|++|| +||...+++.+|+++..++..+.. .++++||.|++....+.++... .++..+.+.++.+. .+|
T Consensus 1 ~~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (161)
T cd00198 1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTD--TDKADLLEAIDALKKGLGG 78 (161)
T ss_pred CcEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeeccccc--CCHHHHHHHHHhcccCCCC
Confidence 367777 899778999999999999999986 8999999999999888887653 24677778888887 789
Q ss_pred CCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchh-h----hc--ccccccEEEE
Q 009657 336 QADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYH-A----IN--LQVPFPVHRF 387 (529)
Q Consensus 336 gTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~-~----~~--~~~~v~I~Tf 387 (529)
+|++..+|..+++.+......+....||++|||..+... . +. ...++.|+.+
T Consensus 79 ~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v 137 (161)
T cd00198 79 GTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTI 137 (161)
T ss_pred CccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEE
Confidence 999999999999999876555677889999999876532 1 11 1457888888
No 45
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.08 E-value=1.8e-09 Score=104.39 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=97.5
Q ss_pred ceeEEEE----ecCCc-------chHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhc
Q 009657 264 ATDLVLV----ASPNG-------PHLRLLKQSMALVVFSLR--PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDR 330 (529)
Q Consensus 264 P~DLV~V----GSM~G-------~kL~l~K~Am~~vi~~L~--~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~ 330 (529)
+.|++|+ |||.. .|++.+|+++..++..+. +.|+++++.|++....+.|++ +..+.+.+..
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~~~~~------~~~v~~~~~~ 75 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRYDNVN------SSKVDQLFAE 75 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccccCCcC------HHHHHHHHhc
Confidence 4688887 89985 389999999999988765 578999999999987766653 6677888889
Q ss_pred cccCCCCChHHHHHHHHHHHHhccCC---CC-CCEEEEccCCCCcchhhh-----c------ccccccEEEEeeeeeccC
Q 009657 331 LFYMGQADPIEGLKKGIKILEDRAHK---NP-QSCILHLSDTPTRTYHAI-----N------LQVPFPVHRFHVGFGFGS 395 (529)
Q Consensus 331 L~a~GgTni~~gL~~A~~~l~~~~~~---n~-v~~IILLTDG~~~~~~~~-----~------~~~~v~I~TfgvGfGfG~ 395 (529)
+.+.|+|+++.+|+.+++.+..+... .+ ...||++|||.+++...+ + ...++.|+++ ++|+
T Consensus 76 ~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v----~vG~ 151 (199)
T cd01457 76 NSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFL----QIGR 151 (199)
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEE----EeCC
Confidence 99999999999999998655443221 12 568999999998653221 1 1236899998 4444
Q ss_pred Ch--hhHHHHHHHHH
Q 009657 396 SN--GFVMHEFEEFL 408 (529)
Q Consensus 396 d~--~~~~~~f~~~l 408 (529)
+. -..+..+.+.+
T Consensus 152 ~~~~~~~L~~ld~~~ 166 (199)
T cd01457 152 DPAATAFLKALDDQL 166 (199)
T ss_pred cHHHHHHHHHHhHHH
Confidence 42 22344555554
No 46
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.07 E-value=1.6e-09 Score=102.26 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=93.1
Q ss_pred eEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCC--C
Q 009657 266 DLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMG--Q 336 (529)
Q Consensus 266 DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~G--g 336 (529)
||+|| +||....++.+|+.+..+++.|. ...|++||+|++.++..++|.... ++..++++|+++...| +
T Consensus 2 DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~--~~~~l~~~i~~i~~~~g~~ 79 (165)
T cd01481 2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHS--TKADVLGAVRRLRLRGGSQ 79 (165)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccC--CHHHHHHHHHhcccCCCCc
Confidence 89998 78887899999999999999996 456999999999999999987543 5788999999997643 4
Q ss_pred CChHHHHHHHHHHHHhccC-----CCCCCEEEEccCCCCcchhhh--c--ccccccEEEEee
Q 009657 337 ADPIEGLKKGIKILEDRAH-----KNPQSCILHLSDTPTRTYHAI--N--LQVPFPVHRFHV 389 (529)
Q Consensus 337 Tni~~gL~~A~~~l~~~~~-----~n~v~~IILLTDG~~~~~~~~--~--~~~~v~I~Tfgv 389 (529)
|+++.||+.+.+.+-.... ++..+.+||+|||...+.... + ...||.|+++|+
T Consensus 80 t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~ 141 (165)
T cd01481 80 LNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGA 141 (165)
T ss_pred ccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeC
Confidence 8999999999886543221 233457899999987642111 1 256777766633
No 47
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2e-10 Score=117.62 Aligned_cols=56 Identities=25% Similarity=0.608 Sum_probs=45.2
Q ss_pred CCccccccccccccccC----CCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccc
Q 009657 55 ANAKNLCAICLEALSYS----SGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111 (529)
Q Consensus 55 ~~~~~~C~ICl~~~~~~----~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 111 (529)
.+++..|.||+++|-.+ ...+.+.....++|||.||++|+..|+++++ +||+||.+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ-TCPICr~p 343 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ-TCPICRRP 343 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc-CCCcccCc
Confidence 57789999999995432 1223345667899999999999999999966 99999998
No 48
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.03 E-value=1.3e-10 Score=94.78 Aligned_cols=55 Identities=27% Similarity=0.572 Sum_probs=47.0
Q ss_pred ccccccccccccc-------CCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 58 KNLCAICLEALSY-------SSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~-------~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.+.|+||...+.. .+.+++..++.+..|.|.||.+||.+||.... .||+||+.|.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-~CPld~q~w~ 81 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-VCPLDRQTWV 81 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-CCCCCCceeE
Confidence 3689999888764 24567778999999999999999999999855 9999999985
No 49
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=99.01 E-value=5.3e-09 Score=100.78 Aligned_cols=133 Identities=14% Similarity=0.189 Sum_probs=99.6
Q ss_pred ecCC-----cchHHHHHHHHHHHH---HhcCCCCeEEEEEeCC-CeEEeecCcccCHHhHHHHHHHHhccccCCCCChHH
Q 009657 271 ASPN-----GPHLRLLKQSMALVV---FSLRPNDRLAIVTYSS-AAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIE 341 (529)
Q Consensus 271 GSM~-----G~kL~l~K~Am~~vi---~~L~~~DrlsIVtFss-~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~ 341 (529)
.||. .+||+.+|+++..++ -...|.||++||+|.+ .+.++.|+|. +...++..++.+.++|+|++..
T Consensus 14 ~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~----D~~~~~~~L~~i~~~g~~~l~~ 89 (187)
T cd01452 14 EYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTN----DQGKILSKLHDVQPKGKANFIT 89 (187)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCC----CHHHHHHHHHhCCCCCcchHHH
Confidence 4664 479999999999886 2346899999999999 9999999974 5888999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCE-EEEccCC-CCcchhh---hc--ccccccEEEEeeeeeccCChhhHHHHHHHHHH
Q 009657 342 GLKKGIKILEDRAHKNPQSC-ILHLSDT-PTRTYHA---IN--LQVPFPVHRFHVGFGFGSSNGFVMHEFEEFLA 409 (529)
Q Consensus 342 gL~~A~~~l~~~~~~n~v~~-IILLTDG-~~~~~~~---~~--~~~~v~I~TfgvGfGfG~d~~~~~~~f~~~la 409 (529)
||+.|...|..+..++...+ ||+++++ ..+...- .. .+.+|.|+++ |||-..++....+.|.++..
T Consensus 90 AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI--~~G~~~~~~~~l~~~~~~~~ 162 (187)
T cd01452 90 GIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDII--NFGEIDDNTEKLTAFIDAVN 162 (187)
T ss_pred HHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEE--EeCCCCCCHHHHHHHHHHhc
Confidence 99999999988766555433 5555555 5432211 11 2568999998 44444556677777777764
No 50
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.6e-10 Score=98.74 Aligned_cols=56 Identities=32% Similarity=0.672 Sum_probs=46.2
Q ss_pred cccccccccccccc------C--CCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSY------S--SGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~------~--~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
..+.|+||...+.. + ..+.+...+.+..|.|.||++||+.||++++ +||+|.++|.
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~-vCPLdn~eW~ 108 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRN-VCPLDNKEWV 108 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcC-cCCCcCccee
Confidence 34789999987753 1 1244567899999999999999999999977 9999999995
No 51
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.89 E-value=8.9e-10 Score=109.45 Aligned_cols=57 Identities=26% Similarity=0.571 Sum_probs=41.7
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccC
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQL 115 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~ 115 (529)
...+|+||++.+.... ..........+|+|.||..||..|++... +||+||..+..+
T Consensus 173 ~~~eC~ICle~~~~~~-~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKE-IKNMYFGILSNCNHVFCIECIDIWKKEKN-TCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCc-cccccceecCCCCCcccHHHHHHHHhcCC-CCCCCCCEeeEE
Confidence 3579999999985110 00011245678999999999999998755 999999987644
No 52
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7.6e-10 Score=110.92 Aligned_cols=49 Identities=29% Similarity=0.675 Sum_probs=42.3
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 111 (529)
..-+|+|||++|- .++....++|.|.||..|++.|+...+..||+||..
T Consensus 322 ~GveCaICms~fi------K~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~ 370 (374)
T COG5540 322 KGVECAICMSNFI------KNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTA 370 (374)
T ss_pred CCceEEEEhhhhc------ccceEEEeccCceechhHHHHHHhhhcccCCccCCC
Confidence 3468999999995 456699999999999999999998555589999987
No 53
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.79 E-value=4.4e-09 Score=76.08 Aligned_cols=45 Identities=36% Similarity=0.871 Sum_probs=38.0
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHW 112 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~ 112 (529)
.|+||++.+. ......+|+|.||..|+..|++.+...||+||..+
T Consensus 1 ~C~iC~~~~~--------~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--------EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--------CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999873 55667779999999999999997566899999764
No 54
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.4e-09 Score=101.95 Aligned_cols=51 Identities=27% Similarity=0.669 Sum_probs=42.3
Q ss_pred CCccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC--CCCccccccccccc
Q 009657 55 ANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH--GSVTCPICRAHWTQ 114 (529)
Q Consensus 55 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~--~~~~CPlCR~~~~~ 114 (529)
..+..+|.|||+.-+ ++++++ |||.||+.||-+|+.. ++..||+|++.+..
T Consensus 44 ~~~~FdCNICLd~ak--------dPVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK--------DPVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccC--------CCEEee-cccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 356789999999754 777777 9999999999999983 34679999999865
No 55
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.2e-09 Score=88.54 Aligned_cols=57 Identities=26% Similarity=0.590 Sum_probs=47.6
Q ss_pred ccccccccccccccC----CCCCCCcceEeCCCCCcccHhHHHHHhh--CCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYS----SGGSPGQAIFTAQCSHAFHFACISSNVR--HGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~----~~~~~~~~~~~~~C~H~FH~~CI~~Wl~--~~~~~CPlCR~~~~ 113 (529)
.++.|.||.-.|+.. +.+|+..++++..|.|.||.+||.+|+. ..+..||+||+.|.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 456999999999753 5567778898899999999999999997 33457999999985
No 56
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=98.73 E-value=9.4e-08 Score=93.82 Aligned_cols=117 Identities=12% Similarity=0.111 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHh---cCCCCeEEEEEeCCCe----------EEeecCcccCHHhHHHHHHHHhcc--------ccC
Q 009657 276 PHLRLLKQSMALVVFS---LRPNDRLAIVTYSSAA----------ARVFPLKRMTSYGKRMALQVIDRL--------FYM 334 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~---L~~~DrlsIVtFss~a----------~~l~pl~~mt~~~k~~a~~~I~~L--------~a~ 334 (529)
.+|+.+|+++..++++ -+++|+++||.|++.. .++.|+...+....+.+++.++.- ...
T Consensus 24 s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 103 (218)
T cd01458 24 SPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAERVEDLKELIEPGGLSFAGQVGDS 103 (218)
T ss_pred ChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHHHHHHHHHhhcchhhhcccCCCC
Confidence 6899999999999998 4899999999999874 234455444444344444433321 135
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcch------hhh-----cc-cccccEEEEeeeee
Q 009657 335 GQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTY------HAI-----NL-QVPFPVHRFHVGFG 392 (529)
Q Consensus 335 GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~------~~~-----~~-~~~v~I~TfgvGfG 392 (529)
++|++.+||..|.+++.....+...++|||+|||..... ... .. ..+|.|++|++|+.
T Consensus 104 ~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 104 GQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred CCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 789999999999999987444456779999999976421 111 11 45899999955443
No 57
>PHA02926 zinc finger-like protein; Provisional
Probab=98.70 E-value=9.9e-09 Score=99.55 Aligned_cols=60 Identities=27% Similarity=0.553 Sum_probs=42.4
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC-----CCcccccccccccC
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG-----SVTCPICRAHWTQL 115 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~-----~~~CPlCR~~~~~~ 115 (529)
+.+.+|+||||.+......++..-....+|+|.||..||..|.+.. ...||+||..+..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 4468999999987411111122234677899999999999999742 24699999986643
No 58
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=98.70 E-value=2.3e-07 Score=94.16 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=91.7
Q ss_pred eeeeeccccCCCceeEEEE----ecCCc-----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHH
Q 009657 252 AAYLSVKLAHQPATDLVLV----ASPNG-----PHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKR 322 (529)
Q Consensus 252 ~~~~~v~~~~r~P~DLV~V----GSM~G-----~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~ 322 (529)
-..++-....+...+++++ .||.. ..++ .|..+..++..| +.|+++||.|++++.++.|++.--. . +
T Consensus 48 kIwlRRtkpskr~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~L-e~g~vgVv~Fg~~~~~v~Plt~d~~-~-~ 123 (266)
T cd01460 48 KIWLRRTKPAKRDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLL-EVGQLGVCSFGEDVQILHPFDEQFS-S-Q 123 (266)
T ss_pred ceEEEeccCCccCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhC-cCCcEEEEEeCCCceEeCCCCCCch-h-h
Confidence 3555533344556777777 69964 2355 566666666666 7799999999999999999975322 2 5
Q ss_pred HHHHHHhccc-cCCCCChHHHHHHHHHHHHhccCC--CC--CCEEEEccCCC--Ccchhh---h--cccccccEEEEee
Q 009657 323 MALQVIDRLF-YMGQADPIEGLKKGIKILEDRAHK--NP--QSCILHLSDTP--TRTYHA---I--NLQVPFPVHRFHV 389 (529)
Q Consensus 323 ~a~~~I~~L~-a~GgTni~~gL~~A~~~l~~~~~~--n~--v~~IILLTDG~--~~~~~~---~--~~~~~v~I~Tfgv 389 (529)
...++++... ..++||+..+|..|.+.+++.... +. ...|||+|||. ++.... . ....++.|+.++|
T Consensus 124 a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~l 202 (266)
T cd01460 124 SGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIII 202 (266)
T ss_pred HHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEE
Confidence 5666666643 458999999999999999876321 22 26899999998 543221 1 1256788888743
No 59
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2e-08 Score=94.29 Aligned_cols=50 Identities=30% Similarity=0.778 Sum_probs=42.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.....|+|||+.+. ...++..+|||.||..||..-++.+. .||+|++++.
T Consensus 129 ~~~~~CPiCl~~~s-------ek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVS-------EKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchh-------hccccccccchhHHHHHHHHHHHhCC-CCCCcccccc
Confidence 45578999999985 35557789999999999999999877 8999998754
No 60
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.64 E-value=2e-08 Score=72.24 Aligned_cols=39 Identities=33% Similarity=0.974 Sum_probs=33.3
Q ss_pred ccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccc
Q 009657 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPIC 108 (529)
Q Consensus 61 C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlC 108 (529)
|+||++.+. +++..++|||.|+..||..|++. +..||+|
T Consensus 1 C~iC~~~~~--------~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--------DPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--------SEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCccc--------CcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 899999985 57788999999999999999998 5599998
No 61
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.63 E-value=2.3e-08 Score=95.97 Aligned_cols=50 Identities=24% Similarity=0.696 Sum_probs=39.4
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC---------------CCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH---------------GSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~---------------~~~~CPlCR~~~~~ 114 (529)
.....|+||++.++ +++. ..|||.||..||..|+.. +...||+||+.+..
T Consensus 16 ~~~~~CpICld~~~--------dPVv-T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVR--------DPVV-TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCC--------CcEE-cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 45678999999874 4444 579999999999999852 23589999998754
No 62
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.61 E-value=3.3e-07 Score=88.40 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=72.8
Q ss_pred chHHHHHHHHHHHHH--hcCCCCeEEEEEeCCCeEEeecCcccC-----HHhHHHHHHHHhcccc---CCCCChHHHHHH
Q 009657 276 PHLRLLKQSMALVVF--SLRPNDRLAIVTYSSAAARVFPLKRMT-----SYGKRMALQVIDRLFY---MGQADPIEGLKK 345 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~--~L~~~DrlsIVtFss~a~~l~pl~~mt-----~~~k~~a~~~I~~L~a---~GgTni~~gL~~ 345 (529)
.+|+.+|..|..+++ .=+.+||++ |++.+..+-|++.-. .+..+.+...++.+.. +.+|. +||..
T Consensus 25 ~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l~~~l~~~q~g~ag~~Ta--dAi~~ 99 (191)
T cd01455 25 RSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETLKMMHAHSQFCWSGDHTV--EATEF 99 (191)
T ss_pred cHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHHHHHHHhcccCccCccHH--HHHHH
Confidence 578999999888874 335899999 555554433333111 1223566667777653 46776 99999
Q ss_pred HHHHHH-hccCCCCCCEEEEccCCCCcchh--h------hcccccccEEEEeee
Q 009657 346 GIKILE-DRAHKNPQSCILHLSDTPTRTYH--A------INLQVPFPVHRFHVG 390 (529)
Q Consensus 346 A~~~l~-~~~~~n~v~~IILLTDG~~~~~~--~------~~~~~~v~I~TfgvG 390 (529)
|++.|+ +...+ ...|||||||.++.+. + +..+.+|.|||||||
T Consensus 100 av~rl~~~~~a~--~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG 151 (191)
T cd01455 100 AIKELAAKEDFD--EAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIG 151 (191)
T ss_pred HHHHHHhcCcCC--CcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEec
Confidence 999997 65444 4569999999976432 1 123778999999554
No 63
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.58 E-value=3.4e-08 Score=74.89 Aligned_cols=47 Identities=28% Similarity=0.678 Sum_probs=37.9
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCc-ccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHA-FHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~-FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
+..|.||++... .+...+|||. |+..|+..|++... .||+||+++..
T Consensus 2 ~~~C~iC~~~~~---------~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR---------DVVLLPCGHLCFCEECAERLLKRKK-KCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS---------SEEEETTCEEEEEHHHHHHHHHTTS-BBTTTTBB-SE
T ss_pred cCCCccCCccCC---------ceEEeCCCChHHHHHHhHHhcccCC-CCCcCChhhcC
Confidence 468999999863 3667789999 99999999999644 99999998754
No 64
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.1e-08 Score=99.35 Aligned_cols=47 Identities=32% Similarity=0.787 Sum_probs=38.7
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHW 112 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~ 112 (529)
.....|.|||+... ...-++|||.||+.||.+|+.... .||+||.+.
T Consensus 237 ~a~~kC~LCLe~~~---------~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~ 283 (293)
T KOG0317|consen 237 EATRKCSLCLENRS---------NPSATPCGHIFCWSCILEWCSEKA-ECPLCREKF 283 (293)
T ss_pred CCCCceEEEecCCC---------CCCcCcCcchHHHHHHHHHHcccc-CCCcccccC
Confidence 34578999999874 223578999999999999998755 799999875
No 65
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.56 E-value=4.8e-08 Score=70.67 Aligned_cols=40 Identities=38% Similarity=0.995 Sum_probs=35.4
Q ss_pred ccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-CCCCccccc
Q 009657 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPIC 108 (529)
Q Consensus 61 C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-~~~~~CPlC 108 (529)
|+||++.+. .....++|+|.|+..||..|++ .+...||+|
T Consensus 1 C~iC~~~~~--------~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--------DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--------SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--------CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999985 5557999999999999999999 666789998
No 66
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.4e-08 Score=109.76 Aligned_cols=54 Identities=35% Similarity=0.665 Sum_probs=44.7
Q ss_pred CCccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 55 ANAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 55 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
......|.||+|.+. .+.......++|+|.||.+|+.+|+++.+ +||+||....
T Consensus 288 ~~~~~~C~IC~e~l~----~~~~~~~~rL~C~Hifh~~CL~~W~er~q-tCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELH----SGHNITPKRLPCGHIFHDSCLRSWFERQQ-TCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhc----cccccccceeecccchHHHHHHHHHHHhC-cCCcchhhhh
Confidence 355789999999997 33335577899999999999999999866 9999999544
No 67
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.50 E-value=8.7e-08 Score=70.31 Aligned_cols=39 Identities=31% Similarity=0.826 Sum_probs=29.0
Q ss_pred ccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCC---Cccccc
Q 009657 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGS---VTCPIC 108 (529)
Q Consensus 61 C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~---~~CPlC 108 (529)
|+||++-|+ ..++++|||+|+..||..|++... ..||+|
T Consensus 1 CpiC~~~~~---------~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---------DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---------SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---------CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999994 456789999999999999998432 479998
No 68
>PRK10997 yieM hypothetical protein; Provisional
Probab=98.44 E-value=2e-06 Score=93.68 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=89.3
Q ss_pred CCCceeEEEE--ecCCcchHHHHHHHHH-HHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCC
Q 009657 261 HQPATDLVLV--ASPNGPHLRLLKQSMA-LVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQA 337 (529)
Q Consensus 261 ~r~P~DLV~V--GSM~G~kL~l~K~Am~-~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgT 337 (529)
.+-|+-+++- |||.|.|...+|..+. .+.-.+..+|++++|.|++..... +++. ..++..+...+... .+|||
T Consensus 322 ~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~-~l~~--~~gl~~ll~fL~~~-f~GGT 397 (487)
T PRK10997 322 PRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTY-ELTG--PDGLEQAIRFLSQS-FRGGT 397 (487)
T ss_pred CCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceee-ccCC--ccCHHHHHHHHHHh-cCCCC
Confidence 3455544444 9999999999998444 444478899999999999987654 4432 34677888888755 68999
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc-h----hhh---cccccccEEEEeee
Q 009657 338 DPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT-Y----HAI---NLQVPFPVHRFHVG 390 (529)
Q Consensus 338 ni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~-~----~~~---~~~~~v~I~TfgvG 390 (529)
++..+|+.+++.+.....++. -||++||+.... . ..+ ....+..+|++.||
T Consensus 398 Dl~~aL~~al~~l~~~~~r~a--dIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~ 456 (487)
T PRK10997 398 DLAPCLRAIIEKMQGREWFDA--DAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMS 456 (487)
T ss_pred cHHHHHHHHHHHHcccccCCc--eEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeC
Confidence 999999999999987554444 499999996532 1 112 22467889988665
No 69
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.41 E-value=1.1e-06 Score=94.15 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=88.4
Q ss_pred CCceeEEEE--ecCCcchHHHHHHHHHHHHH-hcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCCC
Q 009657 262 QPATDLVLV--ASPNGPHLRLLKQSMALVVF-SLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQAD 338 (529)
Q Consensus 262 r~P~DLV~V--GSM~G~kL~l~K~Am~~vi~-~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTn 338 (529)
..|+-|.+- |||.|.|...+|..+..++. .|..+=++.++.|++....+-...+ ..+..++...+....+|| ||
T Consensus 272 ~GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~~k--~~~~~e~i~fL~~~f~GG-TD 348 (437)
T COG2425 272 EGPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELYEK--KIDIEELIEFLSYVFGGG-TD 348 (437)
T ss_pred CCCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeecCC--ccCHHHHHHHHhhhcCCC-CC
Confidence 456544444 99999999999976666555 4567778999999994433332211 125677777777777776 99
Q ss_pred hHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchhhh-------cccccccEEEEeee
Q 009657 339 PIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYHAI-------NLQVPFPVHRFHVG 390 (529)
Q Consensus 339 i~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~~~-------~~~~~v~I~TfgvG 390 (529)
+..+|..|++.++.+...+ .-||++|||.+.-.+.. .......+|++.||
T Consensus 349 ~~~~l~~al~~~k~~~~~~--adiv~ITDg~~~~~~~~~~~v~e~~k~~~~rl~aV~I~ 405 (437)
T COG2425 349 ITKALRSALEDLKSRELFK--ADIVVITDGEDERLDDFLRKVKELKKRRNARLHAVLIG 405 (437)
T ss_pred hHHHHHHHHHHhhcccccC--CCEEEEeccHhhhhhHHHHHHHHHHHHhhceEEEEEec
Confidence 9999999999999887766 67999999976432111 22456789998554
No 70
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.41 E-value=1.7e-07 Score=65.28 Aligned_cols=39 Identities=44% Similarity=0.997 Sum_probs=32.6
Q ss_pred ccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccc
Q 009657 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPIC 108 (529)
Q Consensus 61 C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlC 108 (529)
|+||++.. .....++|+|.||..|+..|++.+...||+|
T Consensus 1 C~iC~~~~---------~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---------KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---------CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999873 4566778999999999999998555689998
No 71
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.33 E-value=4.1e-07 Score=67.23 Aligned_cols=44 Identities=36% Similarity=0.726 Sum_probs=36.8
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRA 110 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~ 110 (529)
.|.||++.+. +......+.|||.|+..|+..+. .....||+||+
T Consensus 1 ~C~~C~~~~~------~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS------EERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCcccc------CCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 4999999993 34568889999999999999998 34558999985
No 72
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.5e-07 Score=91.81 Aligned_cols=59 Identities=25% Similarity=0.561 Sum_probs=45.4
Q ss_pred CCccccccccccccccCCC-CCCCcceEeCCCCCcccHhHHHHHhhCCC-Ccccccccccc
Q 009657 55 ANAKNLCAICLEALSYSSG-GSPGQAIFTAQCSHAFHFACISSNVRHGS-VTCPICRAHWT 113 (529)
Q Consensus 55 ~~~~~~C~ICl~~~~~~~~-~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~-~~CPlCR~~~~ 113 (529)
..+++.|+||-+.+..+.. .|--+.+.++.|+|+||.-||..|.-.|+ ++||.|+.++.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 3457799999999985431 11123667899999999999999997544 79999999864
No 73
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.24 E-value=8.6e-06 Score=85.98 Aligned_cols=127 Identities=23% Similarity=0.269 Sum_probs=108.1
Q ss_pred ccCCCceeEEEE----ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhc-ccc
Q 009657 259 LAHQPATDLVLV----ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDR-LFY 333 (529)
Q Consensus 259 ~~~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~-L~a 333 (529)
...+.+.+++++ |||.+..+..+|.++..++..+.+.|.+++++|......+.|.+. ..++..+..+|+. +.+
T Consensus 32 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~ 109 (399)
T COG2304 32 LDLLVPANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPTG--ATNKESITAAIDQSLQA 109 (399)
T ss_pred cccccCcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCccc--ccCHHHHHHHHhhhhcc
Confidence 345788999988 899998899999999999999999999999999998888777763 3578899999999 999
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcch--hh--h----cc--cccccEEEE
Q 009657 334 MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTY--HA--I----NL--QVPFPVHRF 387 (529)
Q Consensus 334 ~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~--~~--~----~~--~~~v~I~Tf 387 (529)
.|.|++..++..+++.+.....+..++.+.++|||..+.. +. + .. ..++.+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~ 173 (399)
T COG2304 110 GGATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTL 173 (399)
T ss_pred ccccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEE
Confidence 9999999999999999999888889999999999987532 11 1 11 347888888
No 74
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.15 E-value=6.8e-07 Score=94.27 Aligned_cols=47 Identities=34% Similarity=0.806 Sum_probs=38.8
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 111 (529)
...+|+||||.|+.+ -.-+.+..|.|+||..|+..|... +||+||--
T Consensus 174 ELPTCpVCLERMD~s-----~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~ 220 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSS-----TTGILTILCNHSFHCSCLMKWWDS---SCPVCRYC 220 (493)
T ss_pred cCCCcchhHhhcCcc-----ccceeeeecccccchHHHhhcccC---cChhhhhh
Confidence 457999999999722 245678889999999999999765 89999954
No 75
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.11 E-value=2.2e-06 Score=67.40 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=37.0
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHW 112 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~ 112 (529)
..|+||++-|. ++ +.++|||.|+..||..|++. ..+||+|+..+
T Consensus 2 ~~Cpi~~~~~~--------~P-v~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMK--------DP-VILPSGQTYERRAIEKWLLS-HGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCC--------CC-EECCCCCEEeHHHHHHHHHH-CCCCCCCcCCC
Confidence 36999999985 33 55689999999999999987 44899999765
No 76
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.08 E-value=2e-06 Score=91.57 Aligned_cols=48 Identities=29% Similarity=0.666 Sum_probs=39.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|+||++.|. .+ ++++|+|.||..||..|+.... .||+||.....
T Consensus 25 ~~l~C~IC~d~~~--------~P-vitpCgH~FCs~CI~~~l~~~~-~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFD--------VP-VLTSCSHTFCSLCIRRCLSNQP-KCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhh--------Cc-cCCCCCCchhHHHHHHHHhCCC-CCCCCCCcccc
Confidence 4569999999885 33 3578999999999999998754 89999998754
No 77
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.7e-06 Score=86.08 Aligned_cols=47 Identities=30% Similarity=0.639 Sum_probs=39.0
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHH-HhhCCCCccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISS-NVRHGSVTCPICRAHW 112 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~-Wl~~~~~~CPlCR~~~ 112 (529)
.+..|.||++.+. ...-++|||.||..||-. |-+.....||+||++.
T Consensus 214 ~d~kC~lC~e~~~---------~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPE---------VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccC---------CcccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 3678999999874 334567999999999999 9887665799999985
No 78
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.5e-06 Score=92.28 Aligned_cols=58 Identities=26% Similarity=0.601 Sum_probs=41.6
Q ss_pred CCccccccccccccccCC-CCCCCc-------ceEeCCCCCcccHhHHHHHhhCCCCccccccccc
Q 009657 55 ANAKNLCAICLEALSYSS-GGSPGQ-------AIFTAQCSHAFHFACISSNVRHGSVTCPICRAHW 112 (529)
Q Consensus 55 ~~~~~~C~ICl~~~~~~~-~~~~~~-------~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~ 112 (529)
......|+|||.++.--. ....-. .-...+|.|.||..|+..|+...+..||+||.+.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pL 633 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPL 633 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCC
Confidence 345678999999986311 000001 1234689999999999999996677999999873
No 79
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.98 E-value=3.8e-06 Score=61.96 Aligned_cols=40 Identities=28% Similarity=0.711 Sum_probs=23.4
Q ss_pred ccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC---CCccc
Q 009657 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG---SVTCP 106 (529)
Q Consensus 61 C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~---~~~CP 106 (529)
|+||++ |. .+......++|||.|+..||..|++.+ ...||
T Consensus 1 CpIc~e-~~-----~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FS-----TEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----------TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-cc-----CCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 74 245667778899999999999999843 46687
No 80
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=6e-06 Score=84.78 Aligned_cols=52 Identities=21% Similarity=0.507 Sum_probs=39.1
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
+..|+||+.+-. .......+..+|||.||..|+...+..+...||.|+..++
T Consensus 3 ~~~CP~Ck~~~y----~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKY----RNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCc----cCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 458999999743 1233344555899999999999976666668999997754
No 81
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=6.1e-06 Score=88.75 Aligned_cols=47 Identities=38% Similarity=0.719 Sum_probs=37.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC----CCcccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG----SVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~----~~~CPlCR~~~~ 113 (529)
...|+|||+... .+..+. |||.||+.||-.++..+ -..||+||..+.
T Consensus 186 ~~~CPICL~~~~--------~p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPS--------VPVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCC--------cccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 678999999753 555666 99999999999977643 247999998764
No 82
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=97.77 E-value=0.00046 Score=67.17 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=84.1
Q ss_pred ceeEEEE--ecCCc----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHH-HHHHhc---ccc
Q 009657 264 ATDLVLV--ASPNG----PHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMA-LQVIDR---LFY 333 (529)
Q Consensus 264 P~DLV~V--GSM~G----~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a-~~~I~~---L~a 333 (529)
-+-||+- |||.+ ...+.+-+-+.-+-.+|.++-.+-++.|++..+++-+++. .+-... .....+ +..
T Consensus 3 rV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~vt~---~~~~~~v~~~~~~~~~~~~ 79 (200)
T PF10138_consen 3 RVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDVTL---DNYEGYVDELHAGLPDWGR 79 (200)
T ss_pred EEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCcCH---HHHHHHHHHHhccccccCC
Confidence 3455555 99985 2466666666667778988888999999999998766653 333222 222222 245
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchhhh----cccccccEEEEeeeeeccCCh
Q 009657 334 MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYHAI----NLQVPFPVHRFHVGFGFGSSN 397 (529)
Q Consensus 334 ~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~~~----~~~~~v~I~TfgvGfGfG~d~ 397 (529)
.|+||...+|+..++....+.......-||++|||.+.+...+ ....+.+|+=--| |+|.+.
T Consensus 80 ~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~~~~~~~~i~~as~~pifwqFV--giG~~~ 145 (200)
T PF10138_consen 80 MGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDDRRAIEKLIREASDEPIFWQFV--GIGDSN 145 (200)
T ss_pred CCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccchHHHHHHHHhccCCCeeEEEE--EecCCc
Confidence 5899999999999887776544444568999999998754332 1234455653223 445443
No 83
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.7e-06 Score=87.54 Aligned_cols=50 Identities=36% Similarity=0.859 Sum_probs=43.8
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
..+..|+|||+-++ ....+.+|.|.||+.||..-++.++..||.||++.-
T Consensus 41 ~~~v~c~icl~llk--------~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLK--------KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHH--------hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 45678999999986 667788999999999999999987789999999853
No 84
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=97.69 E-value=0.00017 Score=71.46 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=65.0
Q ss_pred CCCceeEEEE----ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHh--ccccC
Q 009657 261 HQPATDLVLV----ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVID--RLFYM 334 (529)
Q Consensus 261 ~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~--~L~a~ 334 (529)
.+.|..||++ |||.+-.--.+ ..+..+...+. ++-++.|++....+.+...- .....+...+. ....+
T Consensus 54 ~~~~~~lvvl~DvSGSM~~~s~~~l-~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l~~--~~~~~~l~~~~~~~~~~~ 127 (222)
T PF05762_consen 54 PRKPRRLVVLCDVSGSMAGYSEFML-AFLYALQRQFR---RVRVFVFSTRLTEVTPLLRR--RDPEEALARLSALVQSFG 127 (222)
T ss_pred cCCCccEEEEEeCCCChHHHHHHHH-HHHHHHHHhCC---CEEEEEEeeehhhhhhhhcc--CCHHHHHHHHHhhccCCC
Confidence 3555566665 99987432222 23334444443 89999999988776644321 11222333333 22378
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc
Q 009657 335 GQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 335 GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~ 372 (529)
|||+|+.+|+.+.+.+..... .-..||++|||..++
T Consensus 128 GgTdi~~aL~~~~~~~~~~~~--~~t~vvIiSDg~~~~ 163 (222)
T PF05762_consen 128 GGTDIGQALREFLRQYARPDL--RRTTVVIISDGWDTN 163 (222)
T ss_pred CccHHHHHHHHHHHHhhcccc--cCcEEEEEecccccC
Confidence 999999999999998864322 445799999995544
No 85
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.69 E-value=1.3e-05 Score=81.97 Aligned_cols=48 Identities=29% Similarity=0.588 Sum_probs=40.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccC
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQL 115 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~ 115 (529)
.-.|.||++-|. .....+|+|.||.-||..+|.... .||.|+..+.+-
T Consensus 23 lLRC~IC~eyf~---------ip~itpCsHtfCSlCIR~~L~~~p-~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFN---------IPMITPCSHTFCSLCIRKFLSYKP-QCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhc---------CceeccccchHHHHHHHHHhccCC-CCCceecccchh
Confidence 457999999985 445566999999999999998744 899999998873
No 86
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.68 E-value=1.8e-05 Score=79.56 Aligned_cols=49 Identities=27% Similarity=0.543 Sum_probs=41.2
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCC
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLP 116 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p 116 (529)
-..|-||.+.|. ......|||.||.-||...|..+. .||+||....+.-
T Consensus 25 ~lrC~IC~~~i~---------ip~~TtCgHtFCslCIR~hL~~qp-~CP~Cr~~~~esr 73 (391)
T COG5432 25 MLRCRICDCRIS---------IPCETTCGHTFCSLCIRRHLGTQP-FCPVCREDPCESR 73 (391)
T ss_pred HHHhhhhhheee---------cceecccccchhHHHHHHHhcCCC-CCccccccHHhhh
Confidence 458999999984 455677999999999999998755 8999999877643
No 87
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.65 E-value=3.9e-05 Score=58.18 Aligned_cols=43 Identities=26% Similarity=0.685 Sum_probs=32.2
Q ss_pred cccccccccccCCCCCCCcceEeCCCC-----CcccHhHHHHHhhC-CCCcccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCS-----HAFHFACISSNVRH-GSVTCPICR 109 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~-----H~FH~~CI~~Wl~~-~~~~CPlCR 109 (529)
.|-||++.. .+......||. |.+|..|+..|+.. ++.+||+|+
T Consensus 1 ~CrIC~~~~-------~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-------DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-------CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999832 23444567886 89999999999973 345899995
No 88
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.1e-05 Score=78.05 Aligned_cols=44 Identities=34% Similarity=0.883 Sum_probs=37.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRA 110 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~ 110 (529)
....|+||++.|. .+ .+++|+|.||..||..|+. ....||.||.
T Consensus 12 ~~~~C~iC~~~~~--------~p-~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFR--------EP-VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhh--------cC-ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 4568999999996 33 7899999999999999988 5568999994
No 89
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.62 E-value=4.7e-05 Score=62.36 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=35.5
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|+||.+-|. +++ .++|||.|...||..|++.+..+||+|+.....
T Consensus 4 ~f~CpIt~~lM~--------dPV-i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMR--------DPV-ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-S--------SEE-EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhh--------Cce-eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 468999999995 444 457899999999999999866699999887543
No 90
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.61 E-value=1.3e-05 Score=89.20 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=44.9
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCCcCC
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNL 119 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~~~ 119 (529)
...|+||+..+. ++.......|+|.||.+||..|.+..+ +||+||..|.++-...
T Consensus 123 ~~~CP~Ci~s~~------DqL~~~~k~c~H~FC~~Ci~sWsR~aq-TCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 123 ENQCPNCLKSCN------DQLEESEKHTAHYFCEECVGSWSRCAQ-TCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhHHHHHHH------HHhhccccccccccHHHHhhhhhhhcc-cCchhhhhhheeeeec
Confidence 456888888876 455666788999999999999999866 9999999998765443
No 91
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.60 E-value=2.1e-05 Score=88.96 Aligned_cols=54 Identities=28% Similarity=0.653 Sum_probs=37.8
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-CCCCcccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPICRAH 111 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-~~~~~CPlCR~~ 111 (529)
+.-++|+||..-+....++-+. -.-..|.|.||..|+-+|.+ .++.+||+||..
T Consensus 1467 sG~eECaICYsvL~~vdr~lPs--krC~TCknKFH~~CLyKWf~Ss~~s~CPlCRse 1521 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPS--KRCATCKNKFHTRCLYKWFASSARSNCPLCRSE 1521 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCc--cccchhhhhhhHHHHHHHHHhcCCCCCCccccc
Confidence 4557899998876521111111 12355999999999999998 345699999965
No 92
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=3.3e-05 Score=80.45 Aligned_cols=48 Identities=25% Similarity=0.546 Sum_probs=33.6
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC--CCcccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG--SVTCPICRAH 111 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~--~~~CPlCR~~ 111 (529)
..|.|| .++. ....+..-+..|||.||..|+..|.+.- +..||+|+-+
T Consensus 5 A~C~Ic-~d~~----p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHIC-IDGR----PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEe-ccCC----ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 579999 5554 2222233344599999999999999832 2389999933
No 93
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4e-05 Score=77.66 Aligned_cols=54 Identities=24% Similarity=0.485 Sum_probs=42.9
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCCcCCC
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~~~~ 120 (529)
+..|+||+.+.. .+ ..+.|+|.||+-||..-......+|++||.++.+--+..|
T Consensus 7 ~~eC~IC~nt~n--------~P-v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 7 KKECLICYNTGN--------CP-VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CCcceeeeccCC--------cC-ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 568999999874 33 6788999999999999777777789999998765433333
No 94
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.43 E-value=3.8e-05 Score=62.57 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=23.5
Q ss_pred cccccccccccccCCCCCCCcceEe---CCCCCcccHhHHHHHhhC---CC-------Ccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFT---AQCSHAFHFACISSNVRH---GS-------VTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~---~~C~H~FH~~CI~~Wl~~---~~-------~~CPlCR~~~~ 113 (529)
+..|+||...+. ..+..+... ..|++.||..|+..|++. .+ ..||.|++++.
T Consensus 2 ~~~C~IC~~~~~----~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRL----DDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-----TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEec----CCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 358999999864 111222222 369999999999999971 11 35999998753
No 95
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.36 E-value=6.2e-05 Score=59.84 Aligned_cols=43 Identities=28% Similarity=0.777 Sum_probs=23.1
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHW 112 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~ 112 (529)
-.|.+|.+-|+ .++.+..|.|.|+..||..-+.. .||+|+.+-
T Consensus 8 LrCs~C~~~l~--------~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILK--------EPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--S--------S-B---SSS--B-TTTGGGGTTT---B-SSS--B-
T ss_pred cCCcHHHHHhc--------CCceeccCccHHHHHHhHHhcCC---CCCCcCChH
Confidence 47999999986 67778889999999999886543 699999763
No 96
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00018 Score=75.54 Aligned_cols=50 Identities=28% Similarity=0.727 Sum_probs=41.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC-CCCcccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH-GSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~-~~~~CPlCR~~ 111 (529)
..+|+|||+.+. ...++.+..+.|||.|...||.+|+-. -...||.|..+
T Consensus 4 g~tcpiclds~~----~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYT----TAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeee----ecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 458999999997 445678899999999999999999952 12579999865
No 97
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.05 E-value=0.0034 Score=56.82 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=61.8
Q ss_pred ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHH--hccccCCCCChHHHHHHHHH
Q 009657 271 ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVI--DRLFYMGQADPIEGLKKGIK 348 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I--~~L~a~GgTni~~gL~~A~~ 348 (529)
|||+..-|...-..+..+++.. ..++-||.|+...+....+.. ....+ -.+.-+|||++..+++.+.+
T Consensus 9 GSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~~~--------~~~~~~~~~~~GgGGTdf~pvf~~~~~ 78 (126)
T PF09967_consen 9 GSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVFRS--------LEDELRDIKLKGGGGTDFRPVFEYLEE 78 (126)
T ss_pred CCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEEec--------ccccccccccCCCCCCcchHHHHHHHh
Confidence 9999877777777777777777 567999999999988876654 11122 24567899999999988754
Q ss_pred HHHhccCCCCCCEEEEccCCCCc
Q 009657 349 ILEDRAHKNPQSCILHLSDTPTR 371 (529)
Q Consensus 349 ~l~~~~~~n~v~~IILLTDG~~~ 371 (529)
. . .....||.+|||...
T Consensus 79 ~----~--~~~~~vi~fTDg~~~ 95 (126)
T PF09967_consen 79 N----R--PRPSVVIYFTDGEGW 95 (126)
T ss_pred c----C--CCCCEEEEEeCCCCC
Confidence 2 1 234568899999753
No 98
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00017 Score=81.13 Aligned_cols=46 Identities=22% Similarity=0.608 Sum_probs=37.5
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
-.|+.|-...+ ..+...|+|.||+.||.+-+.++...||.|.+.|.
T Consensus 644 LkCs~Cn~R~K---------d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 644 LKCSVCNTRWK---------DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred eeCCCccCchh---------hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 57999997764 33455699999999999999876679999998763
No 99
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00042 Score=72.71 Aligned_cols=56 Identities=25% Similarity=0.635 Sum_probs=38.3
Q ss_pred CccccccccccccccCCCCCC-CcceEeCCCCCcccHhHHHHHhhCC------CCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSP-GQAIFTAQCSHAFHFACISSNVRHG------SVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~-~~~~~~~~C~H~FH~~CI~~Wl~~~------~~~CPlCR~~~~ 113 (529)
..+..|+||++.+. .+.+. ..--....|.|.||..||..|-... ...||.||..-+
T Consensus 159 s~~k~CGICme~i~--ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETIN--EKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhcc--ccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34689999999875 11111 1111236699999999999998422 258999997643
No 100
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00018 Score=55.17 Aligned_cols=48 Identities=29% Similarity=0.572 Sum_probs=35.9
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCC-cccHhHHHHHhhCCCCcccccccccccC
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSH-AFHFACISSNVRHGSVTCPICRAHWTQL 115 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H-~FH~~CI~~Wl~~~~~~CPlCR~~~~~~ 115 (529)
++|.||.|.-- ..+.--||| -.++.|--+.++.....||+||++++++
T Consensus 8 dECTICye~pv---------dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHPV---------DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCcc---------hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence 78999999642 122345999 4799998887764555899999988764
No 101
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.84 E-value=0.00029 Score=71.35 Aligned_cols=51 Identities=29% Similarity=0.755 Sum_probs=40.2
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----------------------CCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----------------------HGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----------------------~~~~~CPlCR~~~~~ 114 (529)
...|.|||-.|. .+.+....+|-|.||+.|+.++|. ....+||+||-+++.
T Consensus 115 ~gqCvICLygfa------~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFA------SSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeec------CCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 467999999996 456677788999999999998773 112479999988764
No 102
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00056 Score=71.11 Aligned_cols=51 Identities=27% Similarity=0.594 Sum_probs=40.1
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCC-cccHhHHHHHhhCCCCcccccccccccCC
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSH-AFHFACISSNVRHGSVTCPICRAHWTQLP 116 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H-~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p 116 (529)
.+..+|.|||.+. .....++|.| ..|..|-+...-+.+ .||+||+.+.++-
T Consensus 288 ~~gkeCVIClse~---------rdt~vLPCRHLCLCs~Ca~~Lr~q~n-~CPICRqpi~~ll 339 (349)
T KOG4265|consen 288 ESGKECVICLSES---------RDTVVLPCRHLCLCSGCAKSLRYQTN-NCPICRQPIEELL 339 (349)
T ss_pred cCCCeeEEEecCC---------cceEEecchhhehhHhHHHHHHHhhc-CCCccccchHhhh
Confidence 4467899999975 4567899999 689999998664434 6999999887643
No 103
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=96.78 E-value=0.02 Score=58.50 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=79.4
Q ss_pred CceeEEEE-ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCc---------------------------
Q 009657 263 PATDLVLV-ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLK--------------------------- 314 (529)
Q Consensus 263 ~P~DLV~V-GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~--------------------------- 314 (529)
+|+=+.+| -|+....++.+|+++...|+.|.++.+|+||+|++.++..- |.
T Consensus 3 pp~~vFviDvs~~~~el~~l~~sl~~~L~~lP~~a~VGlITfd~~V~~~~-L~~~~~~~~~vf~g~~~~~~~~~~~~l~~ 81 (267)
T cd01478 3 PPVFLFVVDTCMDEEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHE-LGFEECSKSYVFRGNKDYTAKQIQDMLGL 81 (267)
T ss_pred CCEEEEEEECccCHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEE-cCCCcCceeeeccCCccCCHHHHHHHhcc
Confidence 44444444 79988899999999999999999999999999999875422 10
Q ss_pred -----------------------------ccCHHhHHHHHHHHhccccC---------CCCChHHHHHHHHHHHHhccCC
Q 009657 315 -----------------------------RMTSYGKRMALQVIDRLFYM---------GQADPIEGLKKGIKILEDRAHK 356 (529)
Q Consensus 315 -----------------------------~mt~~~k~~a~~~I~~L~a~---------GgTni~~gL~~A~~~l~~~~~~ 356 (529)
++ .+.+..+...|+.|... ....++.||+.|..+|+.. .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl-~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~-~~ 159 (267)
T cd01478 82 GGPAMRPSASQHPGAGNPLPSAAASRFLLPV-SQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEAC-FP 159 (267)
T ss_pred ccccccccccCcCCccccccccccccEEEEH-HHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhh-cC
Confidence 00 23455677778888553 3456899999999999854 23
Q ss_pred CCCCEEEEccCCCCcc
Q 009657 357 NPQSCILHLSDTPTRT 372 (529)
Q Consensus 357 n~v~~IILLTDG~~~~ 372 (529)
+...+|++++=|.++.
T Consensus 160 ~~gGki~~F~sg~pT~ 175 (267)
T cd01478 160 NTGARIMLFAGGPCTV 175 (267)
T ss_pred CCCcEEEEEECCCCCC
Confidence 4456899999998764
No 104
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=96.77 E-value=0.02 Score=57.18 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=75.3
Q ss_pred eeEEEE--ecCC---cchHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCeEEee---------------------cC---
Q 009657 265 TDLVLV--ASPN---GPHLRLLKQSMALVVFSLR--PNDRLAIVTYSSAAARVF---------------------PL--- 313 (529)
Q Consensus 265 ~DLV~V--GSM~---G~kL~l~K~Am~~vi~~L~--~~DrlsIVtFss~a~~l~---------------------pl--- 313 (529)
.-.||| -|+. ..-++.+|+++...|+.|. ++-||+||+|++..+..- |+
T Consensus 4 p~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~~~~ 83 (239)
T cd01468 4 PVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPLPDR 83 (239)
T ss_pred CEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCCcCc
Confidence 344555 5665 4569999999999999998 889999999988654321 10
Q ss_pred --cccCHHhHHHHHHHHhccccC--------CCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc
Q 009657 314 --KRMTSYGKRMALQVIDRLFYM--------GQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 314 --~~mt~~~k~~a~~~I~~L~a~--------GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~ 372 (529)
..+ .+.+..+...++.|... ....++.||+.|..+|+... ...+|++++.|.++-
T Consensus 84 ~l~~~-~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~---~gGkI~~f~sg~pt~ 148 (239)
T cd01468 84 FLVPL-SECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF---AGGRIIVFQGGLPTV 148 (239)
T ss_pred eeeeH-HHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC---CCceEEEEECCCCCC
Confidence 011 23456677777776643 34678999999999998753 456899999998864
No 105
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.61 E-value=0.0015 Score=51.20 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=30.7
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-CCCCcccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPI 107 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-~~~~~CPl 107 (529)
...|+|.+..|. +++....|+|.|-...|..|+. .+...||+
T Consensus 11 ~~~CPiT~~~~~--------~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE--------DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S--------SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh--------CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 468999999996 7888889999999999999994 44568998
No 106
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.48 E-value=0.001 Score=69.61 Aligned_cols=49 Identities=29% Similarity=0.766 Sum_probs=38.8
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-CCCCcccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-~~~~~CPlCR~~ 111 (529)
.-.|..|-+.+. -..+.+.-++|+|+||..|+...+. ++..+||-||+-
T Consensus 365 ~L~Cg~CGe~~G-----lk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 365 ELYCGLCGESIG-----LKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhhc-----CCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 346999999884 1235677899999999999999987 445789999943
No 107
>PLN00162 transport protein sec23; Provisional
Probab=96.44 E-value=0.49 Score=55.24 Aligned_cols=105 Identities=14% Similarity=0.081 Sum_probs=75.1
Q ss_pred CceeEEEE-ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCc---------------------------
Q 009657 263 PATDLVLV-ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLK--------------------------- 314 (529)
Q Consensus 263 ~P~DLV~V-GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~--------------------------- 314 (529)
+|+=+.+| -||....++.+|.++...|+.|.++.+|+||+|++.++..- |.
T Consensus 124 pp~fvFvID~s~~~~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~-L~~~~~~~~~Vf~g~k~~t~~~l~~~l~l 202 (761)
T PLN00162 124 PPVFVFVVDTCMIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHE-LGFSECSKSYVFRGNKEVSKDQILEQLGL 202 (761)
T ss_pred CcEEEEEEecchhHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEE-cCCCCCcceEEecCCccCCHHHHHHHhcc
Confidence 45444334 78988899999999999999999999999999998874321 10
Q ss_pred -----------------------------ccCHHhHHHHHHHHhccccC---------CCCChHHHHHHHHHHHHhccCC
Q 009657 315 -----------------------------RMTSYGKRMALQVIDRLFYM---------GQADPIEGLKKGIKILEDRAHK 356 (529)
Q Consensus 315 -----------------------------~mt~~~k~~a~~~I~~L~a~---------GgTni~~gL~~A~~~l~~~~~~ 356 (529)
++ .+-+..+...|+.|... .....+.||+.|..+|+.. .+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl-~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~-~~ 280 (761)
T PLN00162 203 GGKKRRPAGGGIAGARDGLSSSGVNRFLLPA-SECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGAC-VP 280 (761)
T ss_pred ccccccccccccccccccccCCCccceeEEH-HHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhc-cC
Confidence 00 12334555666666543 2456899999999999864 33
Q ss_pred CCCCEEEEccCCCC
Q 009657 357 NPQSCILHLSDTPT 370 (529)
Q Consensus 357 n~v~~IILLTDG~~ 370 (529)
+...+|++++-|.+
T Consensus 281 ~~gGrI~~F~sgpp 294 (761)
T PLN00162 281 GTGARIMAFVGGPC 294 (761)
T ss_pred CCceEEEEEeCCCC
Confidence 55678899888854
No 108
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=96.41 E-value=0.039 Score=55.44 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=74.8
Q ss_pred ceeEEEE--ecCCcc---hHHHHHHHHHHHHHhcCCC---CeEEEEEeCCCeEEee---------------------cC-
Q 009657 264 ATDLVLV--ASPNGP---HLRLLKQSMALVVFSLRPN---DRLAIVTYSSAAARVF---------------------PL- 313 (529)
Q Consensus 264 P~DLV~V--GSM~G~---kL~l~K~Am~~vi~~L~~~---DrlsIVtFss~a~~l~---------------------pl- 313 (529)
|.-.+|| -|+... =++.++++++..|+.|.++ -+|+||+|++..+..- |+
T Consensus 3 pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 82 (244)
T cd01479 3 PAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPLP 82 (244)
T ss_pred CCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCCC
Confidence 3344555 577654 3999999999999999876 8999999998764320 11
Q ss_pred ----cccCHHhHHHHHHHHhcccc------CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcch
Q 009657 314 ----KRMTSYGKRMALQVIDRLFY------MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTY 373 (529)
Q Consensus 314 ----~~mt~~~k~~a~~~I~~L~a------~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~ 373 (529)
.++ .+.+..+...++.|.. ..+..++.||+.|..+|+. ...+||+.+.|.++.+
T Consensus 83 ~~~lv~l-~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~-----~GGkIi~f~s~~pt~G 146 (244)
T cd01479 83 DGLLVNL-KESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKE-----TGGKIIVFQSSLPTLG 146 (244)
T ss_pred cceeecH-HHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHh-----cCCEEEEEeCCCCCcC
Confidence 111 2456777777777632 3457789999999999984 3468999999988643
No 109
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.39 E-value=0.0014 Score=68.78 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=39.7
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-CCCCcccccccccccC
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPICRAHWTQL 115 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-~~~~~CPlCR~~~~~~ 115 (529)
-..|-||-|. ++.+..-+|||..|..|+..|-. .+..+||.||.+++..
T Consensus 369 FeLCKICaen---------dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 369 FELCKICAEN---------DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHHhhcc---------CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 3569999884 46677889999999999999985 3245999999988763
No 110
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=96.36 E-value=0.03 Score=56.74 Aligned_cols=117 Identities=11% Similarity=0.169 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEE---eecCc---ccC--HHhH----HHHHHHHhccccCCCCChHHHH
Q 009657 276 PHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAAR---VFPLK---RMT--SYGK----RMALQVIDRLFYMGQADPIEGL 343 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~---l~pl~---~mt--~~~k----~~a~~~I~~L~a~GgTni~~gL 343 (529)
+..+.+-.++..++..+.++.++-+..|...... +.++- +.+ -.+. +.-..++..+...|.|+...-|
T Consensus 62 N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI 141 (254)
T cd01459 62 NPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVI 141 (254)
T ss_pred cHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHH
Confidence 5677777888888999999999999999875322 22221 100 0122 2234466678888999999999
Q ss_pred HHHHHHHHhccCCCCCCEEEEccCCCCcchhhh----cccccccEEEEeeeee
Q 009657 344 KKGIKILEDRAHKNPQSCILHLSDTPTRTYHAI----NLQVPFPVHRFHVGFG 392 (529)
Q Consensus 344 ~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~~~----~~~~~v~I~TfgvGfG 392 (529)
+.|++..+.....+..--+++||||+.++.... ......||+-+-||+|
T Consensus 142 ~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D~~~t~~aIv~AS~~PlSIiiVGVG 194 (254)
T cd01459 142 RAAANIAKASNSQSKYHILLIITDGEITDMNETIKAIVEASKYPLSIVIVGVG 194 (254)
T ss_pred HHHHHHHHHhcCCCceEEEEEECCCCcccHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 999998877654444556899999998764322 2234456665555555
No 111
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0018 Score=69.25 Aligned_cols=54 Identities=28% Similarity=0.747 Sum_probs=42.5
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCCcCC
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNL 119 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~~~ 119 (529)
.++..|.||+..+. .++.+ +|||.|+..||.+-+.+ ..-||.||..+.+.+...
T Consensus 82 ~sef~c~vc~~~l~--------~pv~t-pcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~ 135 (398)
T KOG4159|consen 82 RSEFECCVCSRALY--------PPVVT-PCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALE 135 (398)
T ss_pred cchhhhhhhHhhcC--------CCccc-cccccccHHHHHHHhcc-CCCCcccccccccchHHH
Confidence 56789999998875 44444 99999999999996665 448999999988755543
No 112
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0097 Score=64.97 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=75.5
Q ss_pred eeEEEE----ecCCc-ch-------HHHHHHHHHHHHHhcC-CCCeEEEEEeCCCeEEee---cCcccCHHhHHHHHHHH
Q 009657 265 TDLVLV----ASPNG-PH-------LRLLKQSMALVVFSLR-PNDRLAIVTYSSAAARVF---PLKRMTSYGKRMALQVI 328 (529)
Q Consensus 265 ~DLV~V----GSM~G-~k-------L~l~K~Am~~vi~~L~-~~DrlsIVtFss~a~~l~---pl~~mt~~~k~~a~~~I 328 (529)
.|++|. .||+- .| |++.|+|+..+-..+. =+|...|.+|++..+.+. .+......-.......|
T Consensus 445 ~Dla~TLLvD~S~St~a~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~~RI 524 (637)
T COG4548 445 HDLAFTLLVDVSASTDAKMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVGPRI 524 (637)
T ss_pred ccceeEEEeecccchHHHhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccchhh
Confidence 788765 45542 23 5666777666544443 389999999998876532 22222333445567788
Q ss_pred hccccCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc
Q 009657 329 DRLFYMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 329 ~~L~a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~ 372 (529)
-.|+++--|.++.||+.|-+.|-.+ ++..+.+||||||.++.
T Consensus 525 mALePg~ytR~G~AIR~As~kL~~r--pq~qklLivlSDGkPnd 566 (637)
T COG4548 525 MALEPGYYTRDGAAIRHASAKLMER--PQRQKLLIVLSDGKPND 566 (637)
T ss_pred eecCccccccccHHHHHHHHHHhcC--cccceEEEEecCCCccc
Confidence 8999999999999999999988776 45667799999999875
No 113
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.03 E-value=0.0023 Score=61.47 Aligned_cols=45 Identities=24% Similarity=0.618 Sum_probs=36.9
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
..|.||.++|+ ..+..+|||.||..|...-++.+. .|-+|.+.-.
T Consensus 197 F~C~iCKkdy~---------spvvt~CGH~FC~~Cai~~y~kg~-~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYE---------SPVVTECGHSFCSLCAIRKYQKGD-ECGVCGKATY 241 (259)
T ss_pred eeehhchhhcc---------chhhhhcchhHHHHHHHHHhccCC-cceecchhhc
Confidence 47999999996 234567999999999998887766 8999987644
No 114
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=95.94 E-value=0.038 Score=55.17 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=66.2
Q ss_pred eEEEE--ecCC---cchHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCeEEee--c------------------------
Q 009657 266 DLVLV--ASPN---GPHLRLLKQSMALVVFSLR--PNDRLAIVTYSSAAARVF--P------------------------ 312 (529)
Q Consensus 266 DLV~V--GSM~---G~kL~l~K~Am~~vi~~L~--~~DrlsIVtFss~a~~l~--p------------------------ 312 (529)
-.+|| -|+. ..-++.++++++.+|+.|. +..||+||+|++..+..- +
T Consensus 5 ~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~~~l 84 (243)
T PF04811_consen 5 VYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLPDGL 84 (243)
T ss_dssp EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTSSSS
T ss_pred EEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCcccE
Confidence 34444 4554 6679999999999999999 889999999998775442 1
Q ss_pred CcccCHHhHHHHHHHHhccc--------cCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCc
Q 009657 313 LKRMTSYGKRMALQVIDRLF--------YMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTR 371 (529)
Q Consensus 313 l~~mt~~~k~~a~~~I~~L~--------a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~ 371 (529)
+.+.. +.+..+...|+.|. ......++.||+.|..+|+... ...+|++++-|.++
T Consensus 85 lv~~~-e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~---~gGkI~~F~s~~pt 147 (243)
T PF04811_consen 85 LVPLS-ECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRN---TGGKILVFTSGPPT 147 (243)
T ss_dssp SEETT-TCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHT---S-EEEEEEESS---
T ss_pred EEEhH-HhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccc---cCCEEEEEeccCCC
Confidence 11221 34556666666653 2245679999999999998543 34578888888764
No 115
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.92 E-value=0.0032 Score=67.58 Aligned_cols=49 Identities=31% Similarity=0.810 Sum_probs=40.7
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
..+..|+||..-+. +++.+..|||.||..|+..|+.. ...||.|+....
T Consensus 19 ~~~l~C~~C~~vl~--------~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 19 DENLLCPICMSVLR--------DPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELT 67 (391)
T ss_pred cccccCcccccccc--------CCCCCCCCCCcccccccchhhcc-CcCCcccccccc
Confidence 44678999999986 55555789999999999999998 558999988754
No 116
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=95.92 E-value=0.036 Score=54.32 Aligned_cols=94 Identities=13% Similarity=0.196 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCeE-------------EeecCcccCHHhHHHHHHHHhc-------ccc
Q 009657 277 HLRLLKQSMALVVFSL---RPNDRLAIVTYSSAAA-------------RVFPLKRMTSYGKRMALQVIDR-------LFY 333 (529)
Q Consensus 277 kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a~-------------~l~pl~~mt~~~k~~a~~~I~~-------L~a 333 (529)
.|..+.+++..++.+. ++.|.+|||.|++... ++.|+...+.+..+.+...+.. ...
T Consensus 22 ~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~~l~~L~~~~~~~~~~~~~~~~ 101 (224)
T PF03731_consen 22 PLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAERLKELEELLKPGDKFENFFSG 101 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHHHHHHHHTTSHHHHHHHHHC-S
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHHHHHHHHHhhcccccccccCCC
Confidence 5788888887777654 6789999999996432 3345555444333333333222 112
Q ss_pred CCCCChHHHHHHHHHHHHhc--cCCCCCCEEEEccCCCC
Q 009657 334 MGQADPIEGLKKGIKILEDR--AHKNPQSCILHLSDTPT 370 (529)
Q Consensus 334 ~GgTni~~gL~~A~~~l~~~--~~~n~v~~IILLTDG~~ 370 (529)
....++.++|..|.+++.+. ..+...++|+|+||+..
T Consensus 102 ~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~ 140 (224)
T PF03731_consen 102 SDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDG 140 (224)
T ss_dssp SS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SS
T ss_pred CCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCC
Confidence 34557999999999999873 34446779999999864
No 117
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.89 E-value=0.0043 Score=73.28 Aligned_cols=57 Identities=25% Similarity=0.694 Sum_probs=41.2
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC---------CCcccccccccccCCcC
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG---------SVTCPICRAHWTQLPRN 118 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~---------~~~CPlCR~~~~~~p~~ 118 (529)
..++.|.||+.+-- ...+-..+.|+|+||++|...-|+++ -..||+|+.+...+-.+
T Consensus 3484 D~DDmCmICFTE~L------~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~Lk 3549 (3738)
T KOG1428|consen 3484 DADDMCMICFTEAL------SAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLK 3549 (3738)
T ss_pred ccCceEEEEehhhh------CCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHH
Confidence 45678999997653 23455678899999999997655421 14699999987765444
No 118
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=95.86 E-value=0.1 Score=51.65 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=56.3
Q ss_pred ecCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCeE-------Eee----c--CcccCH----------HhHHHHHH
Q 009657 271 ASPNGPHLRLLKQSMALVVFSLR-PNDRLAIVTYSSAAA-------RVF----P--LKRMTS----------YGKRMALQ 326 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~~vi~~L~-~~DrlsIVtFss~a~-------~l~----p--l~~mt~----------~~k~~a~~ 326 (529)
|||.|.++..+..++-.+.+.|. -+=.+=|+.|.+.+- .+. | ..++++ .-...++.
T Consensus 23 GSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~vyk~a~~~wrraR~ 102 (219)
T PF11775_consen 23 GSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHIVYKDADTPWRRARR 102 (219)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHHHHHhcCChhhhHHH
Confidence 99999999999877777777664 355677788877631 010 1 011110 00111111
Q ss_pred HHhccccC--CCCCh-HHHHHHHHHHHHhccCCCCCCEEEEccCCCCc
Q 009657 327 VIDRLFYM--GQADP-IEGLKKGIKILEDRAHKNPQSCILHLSDTPTR 371 (529)
Q Consensus 327 ~I~~L~a~--GgTni-~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~ 371 (529)
.+..|-.. ..-|+ ++||+-|.+-|..+....+ -+|++|||.|.
T Consensus 103 ~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rk--iLiViSDG~P~ 148 (219)
T PF11775_consen 103 NLGLMMREGLLKENIDGEALRWAAERLLARPEQRK--ILIVISDGAPA 148 (219)
T ss_pred hHHHHhhccccccCCcHHHHHHHHHHHHcCCccce--EEEEEeCCCcC
Confidence 11111111 12232 4888888888877765444 59999999875
No 119
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.75 E-value=0.0087 Score=55.95 Aligned_cols=51 Identities=18% Similarity=0.473 Sum_probs=36.5
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCC---cccHhHHHHHhhC-CCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSH---AFHFACISSNVRH-GSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H---~FH~~CI~~Wl~~-~~~~CPlCR~~~~~ 114 (529)
.....|-||.++-. .....-.|.. .-|..|+..|+.. +...|++|+.++.-
T Consensus 6 ~~~~~CRIC~~~~~--------~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD--------VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC--------CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 34678999998732 2223444555 4499999999984 45789999999753
No 120
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.71 E-value=0.011 Score=44.74 Aligned_cols=48 Identities=21% Similarity=0.609 Sum_probs=25.7
Q ss_pred ccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 61 C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
|++|.+++. ..+.....-+|++..+..|-..=++.....||-||+.++
T Consensus 1 cp~C~e~~d-----~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELD-----ETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B-------CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccc-----cCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 789999995 234677778999999999988877655668999998763
No 121
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0097 Score=60.02 Aligned_cols=48 Identities=25% Similarity=0.660 Sum_probs=37.2
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC-CCCcccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH-GSVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~-~~~~CPlCR~~~~ 113 (529)
+.+|++|-+.-. -+-...+|+|.||.-||..-+.. -+.+||.|.....
T Consensus 239 ~~~C~~Cg~~Pt--------iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPT--------IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCC--------CCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 569999998742 44456779999999999997763 3468999988754
No 122
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=95.66 E-value=0.26 Score=48.40 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=79.6
Q ss_pred ecCCcchHHHHHHHHH------HHHHhcCC----CCeEEEEEeCC--CeEEeecCcccCH-HhHHHHHHHHhccc--cCC
Q 009657 271 ASPNGPHLRLLKQSMA------LVVFSLRP----NDRLAIVTYSS--AAARVFPLKRMTS-YGKRMALQVIDRLF--YMG 335 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~------~vi~~L~~----~DrlsIVtFss--~a~~l~pl~~mt~-~~k~~a~~~I~~L~--a~G 335 (529)
|||...-..+=++.+. .|++.+.. .=.|++|.|++ ..++++|-+.++. +.-+.+...|.... ..+
T Consensus 14 ~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~~l~~~~r~~~~ 93 (205)
T PF06707_consen 14 GSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAARLRAAPRRFGG 93 (205)
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHHHHHhCCCCCCC
Confidence 8998765444444433 34444433 33677888887 5778889998864 33444444555442 356
Q ss_pred CCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcch-hhh------cccccccEEEEeee
Q 009657 336 QADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTY-HAI------NLQVPFPVHRFHVG 390 (529)
Q Consensus 336 gTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~-~~~------~~~~~v~I~TfgvG 390 (529)
+|.|+.||..|..+|++...+.....|=+-.||..|.. ... ....||.|+.+.|+
T Consensus 94 ~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~GitINgL~I~ 155 (205)
T PF06707_consen 94 RTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGITINGLAIL 155 (205)
T ss_pred CchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHHCCeEEeeeEec
Confidence 69999999999999998765555556778889988754 322 12568999988664
No 123
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.011 Score=60.67 Aligned_cols=57 Identities=25% Similarity=0.519 Sum_probs=45.8
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCCcC
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRN 118 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~~ 118 (529)
-..|-||-++|.+. .+....+.+.|||.|+..|+..-+......||.||..| ++|..
T Consensus 3 ~~~c~~c~~~~s~~---~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~-~~~~~ 59 (296)
T KOG4185|consen 3 FPECEICNEDYSSE---DGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT-EIPDG 59 (296)
T ss_pred CCceeecCcccccc---CcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc-cCCch
Confidence 35899999999621 23456778889999999999998888888999999998 45543
No 124
>PHA02862 5L protein; Provisional
Probab=95.06 E-value=0.015 Score=53.43 Aligned_cols=47 Identities=17% Similarity=0.547 Sum_probs=33.8
Q ss_pred ccccccccccccCCCCCCCcceEeCCC---CCcccHhHHHHHhhC-CCCcccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQC---SHAFHFACISSNVRH-GSVTCPICRAHWT 113 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C---~H~FH~~CI~~Wl~~-~~~~CPlCR~~~~ 113 (529)
+.|-||+++-+ +....-.| -..-|..|+..|+.. ++..||+|+.++.
T Consensus 3 diCWIC~~~~~--------e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCD--------ERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCC--------CCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 58999999732 22333334 246799999999983 3468999999875
No 125
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.01 E-value=0.006 Score=62.99 Aligned_cols=52 Identities=27% Similarity=0.517 Sum_probs=43.5
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCC
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLP 116 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p 116 (529)
+..-+|.+|-.=|- ++..+.+|=|.||..||-..+.. +..||.|...+.+.+
T Consensus 13 n~~itC~LC~GYli--------DATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLI--------DATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceee--------cchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCcc
Confidence 45678999999886 66678899999999999999998 449999999876643
No 126
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.97 E-value=0.0085 Score=64.99 Aligned_cols=46 Identities=28% Similarity=0.735 Sum_probs=35.7
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----CCCCccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----HGSVTCPICRAHW 112 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~~~~CPlCR~~~ 112 (529)
...|.+|.+.- +..+...|.|.||.-||..++. ..+.+||+|...+
T Consensus 536 ~~~C~lc~d~a---------ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPA---------EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChh---------hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 45899999864 3344566999999999988775 4458999998653
No 127
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.61 Score=46.03 Aligned_cols=127 Identities=19% Similarity=0.311 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHHHHh-c--CCCCeEEEEEeCC-CeEEeecCcccCHHhHHHHHHHHhccccCCCCChHHHHHHHHHHHH
Q 009657 276 PHLRLLKQSMALVVFS-L--RPNDRLAIVTYSS-AAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGLKKGIKILE 351 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~-L--~~~DrlsIVtFss-~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL~~A~~~l~ 351 (529)
+++..-|.|+..+... + +|...++|++-.. +++++..+|. .+-.++..+..+...|..++..||+.|.=.|+
T Consensus 24 tRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~----d~gkils~lh~i~~~g~~~~~~~i~iA~lalk 99 (259)
T KOG2884|consen 24 TRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTS----DRGKILSKLHGIQPHGKANFMTGIQIAQLALK 99 (259)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccc----cchHHHHHhcCCCcCCcccHHHHHHHHHHHHH
Confidence 6899999999988764 3 5889999999998 7777776653 46679999999999999999999999999999
Q ss_pred hccCCCCCCEEEEccCCCCcc-hhhh-----c-ccccccEEEEeeeeeccCC--hhhHHHHHHHHHHh
Q 009657 352 DRAHKNPQSCILHLSDTPTRT-YHAI-----N-LQVPFPVHRFHVGFGFGSS--NGFVMHEFEEFLAT 410 (529)
Q Consensus 352 ~~~~~n~v~~IILLTDG~~~~-~~~~-----~-~~~~v~I~TfgvGfGfG~d--~~~~~~~f~~~la~ 410 (529)
.|..+|...+||++--.+-.. .+.+ + .+.+|.|--+ .||+. +.....+|.+++.+
T Consensus 100 hRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii----~FGE~~~~~e~l~~fida~N~ 163 (259)
T KOG2884|consen 100 HRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDII----NFGEAENNTEKLFEFIDALNG 163 (259)
T ss_pred hhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEE----EeccccccHHHHHHHHHHhcC
Confidence 998888888888877333221 1111 1 1556777776 56654 33445566666655
No 128
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.83 E-value=0.012 Score=50.90 Aligned_cols=33 Identities=24% Similarity=0.736 Sum_probs=27.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHH
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACIS 95 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~ 95 (529)
.....|++|-..+. .......||||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~-------~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLG-------NSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCC-------CceEEEeCCCeEEeccccc
Confidence 44678999999994 3677788999999999985
No 129
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=94.75 E-value=0.27 Score=52.67 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=62.8
Q ss_pred ecCC--c--chHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc--cCCCCChHHHHH
Q 009657 271 ASPN--G--PHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF--YMGQADPIEGLK 344 (529)
Q Consensus 271 GSM~--G--~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~--a~GgTni~~gL~ 344 (529)
-||. | ..+.++--|+..+|..--++|.+.||+|...|+.+- .. .+..+. -.-+||+..||.
T Consensus 474 ~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~A~~v~-v~------------eLt~l~~v~eqgTNlhhaL~ 540 (652)
T COG4867 474 FSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRYARTVT-AA------------ELTGLAGVYEQGTNLHHALA 540 (652)
T ss_pred HHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccchhcccC-HH------------HHhcCCCccccccchHHHHH
Confidence 3775 5 346666667778888888999999999999987652 11 122232 235899999999
Q ss_pred HHHHHHHhccCCCCCCEEEEccCCCCc
Q 009657 345 KGIKILEDRAHKNPQSCILHLSDTPTR 371 (529)
Q Consensus 345 ~A~~~l~~~~~~n~v~~IILLTDG~~~ 371 (529)
.|-+.+... ....+.|+++|||.++
T Consensus 541 LA~r~l~Rh--~~~~~~il~vTDGePt 565 (652)
T COG4867 541 LAGRHLRRH--AGAQPVVLVVTDGEPT 565 (652)
T ss_pred HHHHHHHhC--cccCceEEEEeCCCcc
Confidence 999888653 3456679999999764
No 130
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=94.57 E-value=0.27 Score=45.82 Aligned_cols=117 Identities=11% Similarity=0.136 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEEeCCCe---EE---eecCcccC--------HHhHHHHHHHHhccccCCCCChHH
Q 009657 276 PHLRLLKQSMALVVFSLRPNDRLAIVTYSSAA---AR---VFPLKRMT--------SYGKRMALQVIDRLFYMGQADPIE 341 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a---~~---l~pl~~mt--------~~~k~~a~~~I~~L~a~GgTni~~ 341 (529)
+.-+.+-.++..+++....+.++-+..|.... .. -|||.... +.-.+.-++.+..+...|-|++..
T Consensus 11 N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GPT~fap 90 (146)
T PF07002_consen 11 NPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGPTNFAP 90 (146)
T ss_pred CHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCCccHHH
Confidence 34566777778888888888899999998753 12 25665211 112344566777888999999999
Q ss_pred HHHHHHHHHHh-ccCCCCCCEEEEccCCCCcchhhh----cccccccEEEEeeeee
Q 009657 342 GLKKGIKILED-RAHKNPQSCILHLSDTPTRTYHAI----NLQVPFPVHRFHVGFG 392 (529)
Q Consensus 342 gL~~A~~~l~~-~~~~n~v~~IILLTDG~~~~~~~~----~~~~~v~I~TfgvGfG 392 (529)
-+++|.+..+. ........-+++||||+-++.+.. ......|++-+-||+|
T Consensus 91 iI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 91 IINHAAKIAKQSNQNGQQYFILLILTDGQITDMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred HHHHHHHHHhhhccCCceEEEEEEecccccccHHHHHHHHHHHccCCeEEEEEEeC
Confidence 99999999885 222344557889999997764322 1133444554444444
No 131
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.51 E-value=0.018 Score=65.64 Aligned_cols=56 Identities=30% Similarity=0.695 Sum_probs=40.4
Q ss_pred CccccccccccccccCCCCCCCcce-EeCCCCCcccHhHHHHHhhCCC------CcccccccccccCCc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAI-FTAQCSHAFHFACISSNVRHGS------VTCPICRAHWTQLPR 117 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~-~~~~C~H~FH~~CI~~Wl~~~~------~~CPlCR~~~~~~p~ 117 (529)
....+|.||.+.|+.. ..+ .-..|-|+||..||..|.+... -.||-|....+.+|.
T Consensus 189 ~~~yeCmIC~e~I~~t------~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~ 251 (950)
T KOG1952|consen 189 NRKYECMICTERIKRT------APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPK 251 (950)
T ss_pred cCceEEEEeeeecccc------CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCc
Confidence 4557899999999721 222 2234889999999999997321 359999976666665
No 132
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=0.019 Score=65.52 Aligned_cols=43 Identities=23% Similarity=0.645 Sum_probs=34.8
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
..|..|-..++ -+.+.--|||+||.+|+. .+...||-|+...+
T Consensus 841 skCs~C~~~Ld--------lP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 841 SKCSACEGTLD--------LPFVHFLCGHSYHQHCLE----DKEDKCPKCLPELR 883 (933)
T ss_pred eeecccCCccc--------cceeeeecccHHHHHhhc----cCcccCCccchhhh
Confidence 58999999885 666777799999999998 34558999997443
No 133
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=94.22 E-value=0.25 Score=53.49 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=66.6
Q ss_pred ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCCChHHHHHHHH
Q 009657 271 ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGLKKGI 347 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL~~A~ 347 (529)
|||...+-.++|.-.-.+..-|. +.-.+-.|...+.|+.|-. ..-=....+|||-++.|++++.
T Consensus 257 GSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~EVdE-------------e~FF~~~esGGT~vSSA~~l~~ 323 (421)
T PF04285_consen 257 GSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAKEVDE-------------EEFFHSRESGGTRVSSAYELAL 323 (421)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceEEecH-------------HHhcccCCCCCeEehHHHHHHH
Confidence 99999999999998877766664 3445566677777766531 1223456789999999999999
Q ss_pred HHHHhccCCCCCC-EEEEccCCCCc
Q 009657 348 KILEDRAHKNPQS-CILHLSDTPTR 371 (529)
Q Consensus 348 ~~l~~~~~~n~v~-~IILLTDG~~~ 371 (529)
+++++++.+..-| -++-+|||++-
T Consensus 324 ~ii~erypp~~wNiY~~~~SDGDN~ 348 (421)
T PF04285_consen 324 EIIEERYPPSDWNIYVFHASDGDNW 348 (421)
T ss_pred HHHHhhCChhhceeeeEEcccCccc
Confidence 9999987665433 68899999864
No 134
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=94.21 E-value=0.32 Score=54.22 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=70.9
Q ss_pred ecCCcchHHHHHHHHHHHHHhcCCCC-eEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCCChHHHHHHHHHH
Q 009657 271 ASPNGPHLRLLKQSMALVVFSLRPND-RLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGLKKGIKI 349 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~~vi~~L~~~D-rlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL~~A~~~ 349 (529)
|||.|..|+.+- |+..++..+..+- +=-+||||++.+.+. ++..+-.+-.+.|.+..-++.||+...+.+-+..
T Consensus 351 GSM~~~pm~vai-aLgll~ae~~~~pf~~~~ITFs~~P~~~~----i~g~~l~ekv~~~~~~~wg~nTn~~aVFdlIL~~ 425 (534)
T PF11443_consen 351 GSMSGPPMDVAI-ALGLLIAELNKGPFKGRFITFSENPQLHK----IKGDTLREKVRFIRRMDWGMNTNFQAVFDLILET 425 (534)
T ss_pred CccCccHHHHHH-HHHHHHHHhcccccCCeEEeecCCceEEE----ecCCCHHHHHHHHHhCCcccCCcHHHHHHHHHHH
Confidence 999999777665 5777788776543 456899999987654 2333555666778888889999999999888887
Q ss_pred HHhccCC--CCCCEEEEccCCCC
Q 009657 350 LEDRAHK--NPQSCILHLSDTPT 370 (529)
Q Consensus 350 l~~~~~~--n~v~~IILLTDG~~ 370 (529)
..+..-+ .-+.+|+++||=+.
T Consensus 426 Av~~~l~~e~M~k~lfV~SDMeF 448 (534)
T PF11443_consen 426 AVKNKLKQEDMPKRLFVFSDMEF 448 (534)
T ss_pred HHHcCCChHHCCceEEEEecccc
Confidence 7665432 35789999998654
No 135
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=0.023 Score=65.25 Aligned_cols=37 Identities=24% Similarity=0.586 Sum_probs=31.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR 99 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~ 99 (529)
...++|.+|...+- ..+-...+|||.||..||-.-+.
T Consensus 815 ep~d~C~~C~~~ll-------~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLL-------IKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhh-------cCcceeeeccchHHHHHHHHHHH
Confidence 56789999999984 56778899999999999988764
No 136
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.036 Score=54.48 Aligned_cols=48 Identities=27% Similarity=0.732 Sum_probs=36.9
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh--------CCCCcccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR--------HGSVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~--------~~~~~CPlCR~~~~ 113 (529)
...|..|-..+. +|+.+ .+.|-|.||+.|+..|.. .| ..||.|..++.
T Consensus 50 ~pNC~LC~t~La------~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaG-yqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLA------SGDTT-RLVCYHLFHWKCLNERAANLPANTAPAG-YQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccc------cCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCc-ccCCCCCCccC
Confidence 457889988886 44444 456999999999999986 22 37999998864
No 137
>PHA03096 p28-like protein; Provisional
Probab=94.00 E-value=0.028 Score=57.86 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=34.8
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC--CCCcccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH--GSVTCPICRAH 111 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~--~~~~CPlCR~~ 111 (529)
..|.||++.... ....+..--....|.|.|+..||..|... ...+||.||.-
T Consensus 179 k~c~ic~e~~~~-k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKA-KYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhh-hccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 689999998862 11111222345679999999999999862 23466666653
No 138
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.022 Score=58.12 Aligned_cols=45 Identities=22% Similarity=0.547 Sum_probs=36.6
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
..|-||...|. .+ +...|+|.||..|-..-++.+. .|++|.+...
T Consensus 242 f~c~icr~~f~--------~p-Vvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFY--------RP-VVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTH 286 (313)
T ss_pred ccccccccccc--------cc-hhhcCCceeehhhhccccccCC-cceecccccc
Confidence 45999999996 33 3456999999999999888766 8999988744
No 139
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.81 E-value=0.04 Score=41.40 Aligned_cols=41 Identities=32% Similarity=0.773 Sum_probs=26.0
Q ss_pred ccccccccccCCCCCCCcceEeCCCCC-----cccHhHHHHHhh-CCCCccccc
Q 009657 61 CAICLEALSYSSGGSPGQAIFTAQCSH-----AFHFACISSNVR-HGSVTCPIC 108 (529)
Q Consensus 61 C~ICl~~~~~~~~~~~~~~~~~~~C~H-----~FH~~CI~~Wl~-~~~~~CPlC 108 (529)
|-||++.-. +.. ....+|.- ..|..|+..|+. .++.+|++|
T Consensus 1 CrIC~~~~~------~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEE------EDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-S------SSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCC------CCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999764 222 45566654 669999999998 345589998
No 140
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.72 E-value=0.033 Score=56.74 Aligned_cols=45 Identities=27% Similarity=0.628 Sum_probs=37.7
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 111 (529)
-.|+.|..-+. .+..+.-|+|.||..||..-|......||.|.++
T Consensus 275 LkCplc~~Llr--------np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLR--------NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhh--------CcccCccccchHHHHHHhhhhhhccccCCCcccc
Confidence 46999998876 5566778999999999998777667799999874
No 141
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.062 Score=55.56 Aligned_cols=44 Identities=23% Similarity=0.544 Sum_probs=32.8
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICR 109 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR 109 (529)
....|+||+.... ...++. .-|-+||..||-+++.... .||+=.
T Consensus 299 ~~~~CpvClk~r~------Nptvl~--vSGyVfCY~Ci~~Yv~~~~-~CPVT~ 342 (357)
T KOG0826|consen 299 DREVCPVCLKKRQ------NPTVLE--VSGYVFCYPCIFSYVVNYG-HCPVTG 342 (357)
T ss_pred ccccChhHHhccC------CCceEE--ecceEEeHHHHHHHHHhcC-CCCccC
Confidence 3568999999864 223333 3599999999999998645 899754
No 142
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.38 E-value=0.045 Score=56.69 Aligned_cols=53 Identities=19% Similarity=0.604 Sum_probs=35.5
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
.++.|+.|+|.|+. .++.-+..+||-..|.-|-..--..-+..||.||+.+.+
T Consensus 13 eed~cplcie~mdi-----tdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDI-----TDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCccccccccc-----ccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 35679999999972 235567788997655555433222223369999999876
No 143
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.04 E-value=0.038 Score=50.45 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=25.5
Q ss_pred cccccccccccccCCCCCCCcceEe----CCCCCcccHhHHHHHh
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFT----AQCSHAFHFACISSNV 98 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~----~~C~H~FH~~CI~~Wl 98 (529)
.-+|.||++.+. .+.|....+ +.=-|.||..|+.+|-
T Consensus 26 ~~EC~IC~~~I~----~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRID----NNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred Ceeehhhhhhhh----cCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 468999999996 222333332 2223899999999994
No 144
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=93.00 E-value=0.4 Score=51.88 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred eeeeccccCCCceeEEEE----ecCCcchHHHHHHHHHHH---HHhcCCCCeEEEEEeCCCe------------------
Q 009657 253 AYLSVKLAHQPATDLVLV----ASPNGPHLRLLKQSMALV---VFSLRPNDRLAIVTYSSAA------------------ 307 (529)
Q Consensus 253 ~~~~v~~~~r~P~DLV~V----GSM~G~kL~l~K~Am~~v---i~~L~~~DrlsIVtFss~a------------------ 307 (529)
.-++++.+..-|+||.++ +||.. .|+.+|.....+ +..+..+=|+++=+|-+..
T Consensus 88 f~~~~~~a~~yPvDLYyLMDlS~SM~d-dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~ 166 (423)
T smart00187 88 FTLTVRQAEDYPVDLYYLMDLSYSMKD-DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPN 166 (423)
T ss_pred EEEEEEecccCccceEEEEeCCccHHH-HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHhcCCCcC
Confidence 445667788899999999 89965 445555544444 5556678899998887642
Q ss_pred -----------EEeecCcccCHHhHHHHHHHHhccccCCCCC----hHHHHHHHHHHHHhc-cCCCCCCEEEEccCCC
Q 009657 308 -----------ARVFPLKRMTSYGKRMALQVIDRLFYMGQAD----PIEGLKKGIKILEDR-AHKNPQSCILHLSDTP 369 (529)
Q Consensus 308 -----------~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTn----i~~gL~~A~~~l~~~-~~~n~v~~IILLTDG~ 369 (529)
+-+++|+ . +.....+.|+....+|+-+ ..+||..|+---++- ++++...-||+.||+.
T Consensus 167 ~~~~c~p~f~f~~~L~LT---~-~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~ 240 (423)
T smart00187 167 YNLTCEPPYGFKHVLSLT---D-DTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAG 240 (423)
T ss_pred CCCCcCCCcceeeeccCC---C-CHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCC
Confidence 1223443 2 5667888898888877665 334444443100222 2335556788889973
No 145
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=92.76 E-value=0.33 Score=53.89 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=69.7
Q ss_pred ceeEEEE---ecCCc------chHHHHHHHHHHHHHhcC-----CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHh
Q 009657 264 ATDLVLV---ASPNG------PHLRLLKQSMALVVFSLR-----PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVID 329 (529)
Q Consensus 264 P~DLV~V---GSM~G------~kL~l~K~Am~~vi~~L~-----~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~ 329 (529)
|+-|.++ |||+. +=|+++|.|+..+++.-. -+||+-+++|..-.+-+.- .=+++-......|.
T Consensus 2 pi~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~---~~~~~~a~~~~eik 78 (888)
T KOG3768|consen 2 PIFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKV---ACEKLGAVVIEEIK 78 (888)
T ss_pred ceEEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhh---HHhhcccHHHHHHH
Confidence 4445555 89974 459999999999987642 4799999999876544321 11233445677788
Q ss_pred ccccCCCCC-hHHHHHHHHHHHHhccCC--------C------CCCEEEEccCCC
Q 009657 330 RLFYMGQAD-PIEGLKKGIKILEDRAHK--------N------PQSCILHLSDTP 369 (529)
Q Consensus 330 ~L~a~GgTn-i~~gL~~A~~~l~~~~~~--------n------~v~~IILLTDG~ 369 (529)
.|.+.+++- +..++..|+++|.-.+.. + -...||++|||.
T Consensus 79 ~l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~ 133 (888)
T KOG3768|consen 79 KLHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGG 133 (888)
T ss_pred hhcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCC
Confidence 888876655 445666699999754321 1 123799999993
No 146
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.72 E-value=0.88 Score=51.10 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=56.1
Q ss_pred ecCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCeE---E----ee----cC--cccCHHhHHHHHHHH--hcccc-
Q 009657 271 ASPNGPHLRLLKQSMALVVFSLR-PNDRLAIVTYSSAAA---R----VF----PL--KRMTSYGKRMALQVI--DRLFY- 333 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~~vi~~L~-~~DrlsIVtFss~a~---~----l~----pl--~~mt~~~k~~a~~~I--~~L~a- 333 (529)
|||.|.++..++.++-.+...|. -+=.+-|+.|.+.+- . |+ |. .+++. +...| +.-.+
T Consensus 403 GSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRlN~-----l~hiiyk~ad~~w 477 (600)
T TIGR01651 403 GSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRLND-----LRHIIYKSADAPW 477 (600)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccccccccchHHHHhcCCCCCCcccch-----hhhhhhhccccch
Confidence 99999888888766666666664 356788889987641 1 11 10 11111 11111 00000
Q ss_pred -----CCCCCh----------HHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc
Q 009657 334 -----MGQADP----------IEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 334 -----~GgTni----------~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~ 372 (529)
+.+.-+ +.||+-|.+.|..+....++ +|++|||.+.+
T Consensus 478 r~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKi--L~ViSDG~P~D 529 (600)
T TIGR01651 478 RRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRI--LMMISDGAPVD 529 (600)
T ss_pred hhhccchhhhhhccccccCCchHHHHHHHHHHhcCcccceE--EEEEeCCCcCC
Confidence 111122 58999999988887655544 99999998753
No 147
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=92.62 E-value=1.4 Score=42.92 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=76.3
Q ss_pred CCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCC-eEEeecCcccCHHhHHHHHHHHhccccCCCCChHHHHHHHHH
Q 009657 273 PNGPHLRLLKQSMALVVFSL---RPNDRLAIVTYSSA-AARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGLKKGIK 348 (529)
Q Consensus 273 M~G~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~-a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL~~A~~ 348 (529)
+..++|..+.+++..+++.+ +|--.++||+..+. ++++.+|.. +...--+++..+..+.+.|...+..||+.|..
T Consensus 13 ~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsg-n~~~h~~~L~~~~~~~~~G~~SLqN~Le~A~~ 91 (193)
T PF04056_consen 13 LKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSG-NPQEHIEALKKLRKLEPSGEPSLQNGLEMARS 91 (193)
T ss_pred CCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCC-CHHHHHHHHHHhccCCCCCChhHHHHHHHHHH
Confidence 34679999999999888865 67789999998864 778878763 22223333444445578999999999999999
Q ss_pred HHHhccCCCCCCEEEEccCCC----Ccc-hhhhc--ccccccEEEE
Q 009657 349 ILEDRAHKNPQSCILHLSDTP----TRT-YHAIN--LQVPFPVHRF 387 (529)
Q Consensus 349 ~l~~~~~~n~v~~IILLTDG~----~~~-~~~~~--~~~~v~I~Tf 387 (529)
.|....... .+.|+++.=.- +.+ ++.+. .+.+|.++.+
T Consensus 92 ~L~~~p~~~-srEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI 136 (193)
T PF04056_consen 92 SLKHMPSHG-SREILVIFGSLTTCDPGDIHETIESLKKENIRVSVI 136 (193)
T ss_pred HHhhCcccc-ceEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEE
Confidence 998764333 34566655221 111 12222 2667888888
No 148
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=92.59 E-value=0.96 Score=51.28 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCe----------EEeecCcccCHHhHHHHHHHHhc-----c--ccC-
Q 009657 276 PHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAA----------ARVFPLKRMTSYGKRMALQVIDR-----L--FYM- 334 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a----------~~l~pl~~mt~~~k~~a~~~I~~-----L--~a~- 334 (529)
.++..+.+++..++++. ++.|.+|||-|++.- .++.+|...+.+....+.+.+.. + ..+
T Consensus 34 s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a~~i~~L~~l~~~~~~~~~~~~~~~ 113 (584)
T TIGR00578 34 TPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGDQGPKKFRDTYGH 113 (584)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCHHHHHHHHHHhhccCccchhhccCC
Confidence 46788888888887765 699999999999743 34557766555544444333322 0 011
Q ss_pred CC-CChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc-h-h----h-h----c-ccccccEEEEeee
Q 009657 335 GQ-ADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT-Y-H----A-I----N-LQVPFPVHRFHVG 390 (529)
Q Consensus 335 Gg-Tni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~-~-~----~-~----~-~~~~v~I~TfgvG 390 (529)
+. ..+.++|..+.+++.+...+-...+|+|+||-.... . . . . . ...||.|..|.+.
T Consensus 114 ~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~~~~~~~a~~~a~dl~~~gi~ielf~l~ 182 (584)
T TIGR00578 114 GSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLK 182 (584)
T ss_pred CCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCchhHHHHHHHHHHHHHhcCeEEEEEecC
Confidence 11 378999999999998744344567999999975421 1 1 1 0 1 1668889888553
No 149
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.37 E-value=0.056 Score=53.81 Aligned_cols=51 Identities=22% Similarity=0.592 Sum_probs=37.9
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCCcCCC
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~~~~ 120 (529)
-|.-|...- .+...+...|+|+||-.|...- ... .||+|++.++-+-....
T Consensus 5 hCn~C~~~~-------~~~~f~LTaC~HvfC~~C~k~~--~~~-~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRFP-------SQDPFFLTACRHVFCEPCLKAS--SPD-VCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EeccccccC-------CCCceeeeechhhhhhhhcccC--Ccc-ccccccceeeeeecccc
Confidence 577777642 2578889999999999999753 222 89999999876655543
No 150
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.073 Score=56.59 Aligned_cols=49 Identities=27% Similarity=0.545 Sum_probs=37.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----CC---CCccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----HG---SVTCPICRA 110 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~---~~~CPlCR~ 110 (529)
.....|.||++... +..-...++|+|.||..|+..+.. .+ ...||-|.-
T Consensus 182 ~slf~C~ICf~e~~------G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQM------GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhc------CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 45678999999875 336778899999999999999885 11 246777654
No 151
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.27 E-value=0.15 Score=53.11 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=42.0
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-CCCCcccccccccccCCcCCC
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPICRAHWTQLPRNLY 120 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-~~~~~CPlCR~~~~~~p~~~~ 120 (529)
....|-||-+.+. -...+||+|..|..|.-..-. -....||+||..|..+-+-..
T Consensus 60 en~~C~ICA~~~T---------Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~ 115 (493)
T COG5236 60 ENMNCQICAGSTT---------YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVFTAS 115 (493)
T ss_pred ccceeEEecCCce---------EEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEEecC
Confidence 3467999999874 455789999999999876432 223479999999999877654
No 152
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.034 Score=56.58 Aligned_cols=43 Identities=33% Similarity=0.702 Sum_probs=31.8
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCc-ccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHA-FHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~-FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|+||++.- ..-+.++|||. -|+.|-..- ..||+||+.+..
T Consensus 300 ~~LC~ICmDaP---------~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAP---------RDCVFLECGHMVTCTKCGKRM-----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCC---------cceEEeecCcEEeehhhcccc-----ccCchHHHHHHH
Confidence 45799999864 34577899994 578887642 279999987643
No 153
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.76 E-value=0.15 Score=51.75 Aligned_cols=52 Identities=15% Similarity=0.492 Sum_probs=41.5
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
.....|+|+...|. +.-..+...+|||+|...||..- . ....||+|-.+|..
T Consensus 111 ~~~~~CPvt~~~~~-----~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFN-----GKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccC-----CceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 45678999999994 33467788899999999999986 3 23479999998875
No 154
>PRK05325 hypothetical protein; Provisional
Probab=91.74 E-value=0.7 Score=49.84 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=63.4
Q ss_pred ecCCcchHHHHHHHHHHHHHhcC-CCCe--EEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCCChHHHHHHHH
Q 009657 271 ASPNGPHLRLLKQSMALVVFSLR-PNDR--LAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGLKKGI 347 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~~vi~~L~-~~Dr--lsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL~~A~ 347 (529)
|||.+.+-+++|.-.-.+..-|. .=++ +-.|.-.+.|+.|-. ..-=...-+|||-+..|++++.
T Consensus 233 GSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~AkEVdE-------------eeFF~~~esGGT~vSSA~~l~~ 299 (401)
T PRK05325 233 GSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAKEVDE-------------EEFFYSRESGGTIVSSAYKLAL 299 (401)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceeEcCH-------------HHccccCCCCCeEehHHHHHHH
Confidence 99999999999997766655553 2233 444455555655432 1222346689999999999999
Q ss_pred HHHHhccCCCCCC-EEEEccCCCCcc
Q 009657 348 KILEDRAHKNPQS-CILHLSDTPTRT 372 (529)
Q Consensus 348 ~~l~~~~~~n~v~-~IILLTDG~~~~ 372 (529)
+++++++.++.-| -++-.|||++-+
T Consensus 300 eIi~~rYpp~~wNIY~f~aSDGDNw~ 325 (401)
T PRK05325 300 EIIEERYPPAEWNIYAFQASDGDNWS 325 (401)
T ss_pred HHHHhhCCHhHCeeEEEEcccCCCcC
Confidence 9999987765544 688999998743
No 155
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=90.98 E-value=1.4 Score=47.00 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=63.1
Q ss_pred ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCCChHHHHHHHH
Q 009657 271 ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGLKKGI 347 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL~~A~ 347 (529)
|||...+.+++|.-.-.+..-|. .+--+-.|.=.+.|+.|- + ..-=...-+|||-+..|++++.
T Consensus 213 GSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI~H~t~AkEVd------E-------eeFF~~~EsGGT~vSSA~~l~~ 279 (371)
T TIGR02877 213 GSMGQFKKYIARSFFFWMVKFLRTKYENVEICFISHHTEAKEVT------E-------EEFFHKGESGGTYCSSGYKKAL 279 (371)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCeeEEcC------H-------HHhcccCCCCCeEehHHHHHHH
Confidence 99999999999997766655554 233344445555565543 1 1222345689999999999999
Q ss_pred HHHHhccCCCCCC-EEEEccCCCCcc
Q 009657 348 KILEDRAHKNPQS-CILHLSDTPTRT 372 (529)
Q Consensus 348 ~~l~~~~~~n~v~-~IILLTDG~~~~ 372 (529)
++++++..++.-| -.+-.|||++-.
T Consensus 280 eII~~rYpp~~wNIY~f~aSDGDNw~ 305 (371)
T TIGR02877 280 EIIDERYNPARYNIYAFHFSDGDNLT 305 (371)
T ss_pred HHHHhhCChhhCeeEEEEcccCCCcc
Confidence 9999987766544 578899998743
No 156
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=0.13 Score=53.99 Aligned_cols=44 Identities=25% Similarity=0.688 Sum_probs=31.6
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
-...|.||++..+ . ....+|||.=+ |+.--.. ...||+||+..+
T Consensus 304 ~p~lcVVcl~e~~--------~-~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPK--------S-AVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCcc--------c-eeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 3568999999865 3 55678999955 6654332 336999999865
No 157
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=0.17 Score=52.82 Aligned_cols=49 Identities=29% Similarity=0.630 Sum_probs=39.0
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
++++.|+||...- -.+ +..+|+|.-|..||.+.+.+.+ .|=.|++....
T Consensus 420 sEd~lCpICyA~p--------i~A-vf~PC~H~SC~~CI~qHlmN~k-~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP--------INA-VFAPCSHRSCYGCITQHLMNCK-RCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc--------chh-hccCCCCchHHHHHHHHHhcCC-eeeEecceeee
Confidence 5678899998742 233 4467999999999999999855 89999987654
No 158
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.39 E-value=0.21 Score=47.57 Aligned_cols=52 Identities=29% Similarity=0.576 Sum_probs=32.9
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-----CCC-----Cccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-----HGS-----VTCPICRAHW 112 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-----~~~-----~~CPlCR~~~ 112 (529)
..|.||..---++ +-.+..--...||..||.-|+..||+ +++ ..||.|..++
T Consensus 166 ~~cgicyayqldG--TipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 166 GACGICYAYQLDG--TIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hcccceeeeecCC--ccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 4577776432211 11223334467999999999999997 222 3599998764
No 159
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.29 E-value=0.023 Score=59.73 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=44.9
Q ss_pred CccccccccccccccCCCCCCC-cceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCCcCC
Q 009657 56 NAKNLCAICLEALSYSSGGSPG-QAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNL 119 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~-~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~~~ 119 (529)
+....|+||.++++ +. ..+..+.|||.+|..|+..|+...+ .||-|++.+...-+..
T Consensus 194 slv~sl~I~~~slK------~~y~k~~~~~~g~~~~~~kL~k~L~~~~-kl~~~~rel~~~~~e~ 251 (465)
T KOG0827|consen 194 SLVGSLSICFESLK------QNYDKISAIVCGHIYHHGKLSKWLATKR-KLPSCRRELPKNGFEE 251 (465)
T ss_pred HHHhhhHhhHHHHH------HHHHHHHHHhhcccchhhHHHHHHHHHH-HhHHHHhhhhhhhHHH
Confidence 34578999999997 33 4566788999999999999998745 8999998865544443
No 160
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.07 E-value=0.17 Score=51.82 Aligned_cols=47 Identities=32% Similarity=0.622 Sum_probs=38.1
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRA 110 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~ 110 (529)
...|+||.+.+.. ....+..++|||.-|..|.......+ .+||+|.+
T Consensus 158 ~~ncPic~e~l~~-----s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFL-----SFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhcc-----ccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 3449999998862 22455678899999999999988887 79999987
No 161
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=89.19 E-value=0.85 Score=48.34 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=46.5
Q ss_pred CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc--cCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc
Q 009657 295 NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF--YMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 295 ~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~--a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~ 372 (529)
-.|+=+..|++.-..+.+..+ +.+...+.+.+..-. -+|||.|+..+..=.+....+ .=.+-..|+|+|||-+.+
T Consensus 249 ~~R~~~F~F~TRLt~vT~~l~--~rD~~~Al~~~~a~v~dw~ggTrig~tl~aF~~~~~~~-~L~~gA~VlilsDg~drd 325 (395)
T COG3552 249 RSRVHVFLFGTRLTRVTHMLR--ERDLEDALRRLSAQVKDWDGGTRIGNTLAAFLRRWHGN-VLSGGAVVLILSDGLDRD 325 (395)
T ss_pred ccceeEEEeechHHHHHHHhc--cCCHHHHHHHHHhhcccccCCcchhHHHHHHHcccccc-ccCCceEEEEEecccccC
Confidence 355558999988777665543 334555665555433 369999998876533221111 112346799999997754
No 162
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.03 E-value=0.24 Score=36.49 Aligned_cols=42 Identities=33% Similarity=0.746 Sum_probs=21.6
Q ss_pred ccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCC-Cccccc
Q 009657 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGS-VTCPIC 108 (529)
Q Consensus 61 C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~-~~CPlC 108 (529)
|.+|.+-.. .|..=....|+=.+|..|+..++++.+ ..||.|
T Consensus 1 C~~C~~iv~------~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT------QGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-S------SSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHe------eeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567776654 223222345888999999999998654 369988
No 163
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.00 E-value=0.16 Score=58.36 Aligned_cols=47 Identities=28% Similarity=0.876 Sum_probs=37.4
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCC-CcccccccccccC
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGS-VTCPICRAHWTQL 115 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~-~~CPlCR~~~~~~ 115 (529)
..|.||++ . ...+...|+|.||..|+..-+.... .-||+||....+-
T Consensus 455 ~~c~ic~~-~---------~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-L---------DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-c---------ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 79999999 3 4556677999999999999887433 3599999987653
No 164
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.79 E-value=0.32 Score=55.64 Aligned_cols=52 Identities=21% Similarity=0.523 Sum_probs=38.2
Q ss_pred CCccccccccccccccCCCCCCCcceEeCCCCC-----cccHhHHHHHhhCC-CCcccccccccc
Q 009657 55 ANAKNLCAICLEALSYSSGGSPGQAIFTAQCSH-----AFHFACISSNVRHG-SVTCPICRAHWT 113 (529)
Q Consensus 55 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H-----~FH~~CI~~Wl~~~-~~~CPlCR~~~~ 113 (529)
..++..|-||..+=. ++.+++. ||.. .-|.+|+-+|+..+ ...|-+|+.+++
T Consensus 9 N~d~~~CRICr~e~~------~d~pLfh-PCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 9 NEDKRSCRICRTEDI------RDDPLFH-PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CccchhceeecCCCC------CCCcCcc-cccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 355689999998632 4555554 3554 57999999999954 367999998864
No 165
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.45 E-value=0.12 Score=61.70 Aligned_cols=45 Identities=31% Similarity=0.606 Sum_probs=36.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRA 110 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~ 110 (529)
.-..|.||++.+. ..-....|||.||..|+..|++.++ .||+|+.
T Consensus 1152 ~~~~c~ic~dil~--------~~~~I~~cgh~~c~~c~~~~l~~~s-~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILR--------NQGGIAGCGHEPCCRCDELWLYASS-RCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHH--------hcCCeeeechhHhhhHHHHHHHHhc-cCcchhh
Confidence 3458999999986 2223566999999999999999866 8999984
No 166
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.37 E-value=0.24 Score=56.19 Aligned_cols=41 Identities=37% Similarity=0.747 Sum_probs=34.0
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPI 107 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPl 107 (529)
..|+||.-.+. |.-.+-..|+|.-|..|...|++.+. .||-
T Consensus 1029 ~~C~~C~l~V~-------gss~~Cg~C~Hv~H~sc~~eWf~~gd-~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVR-------GSSNFCGTCGHVGHTSCMMEWFRTGD-VCPS 1069 (1081)
T ss_pred eeeeeEeeEee-------ccchhhccccccccHHHHHHHHhcCC-cCCC
Confidence 45888887774 45667778999999999999999988 8984
No 167
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=0.16 Score=47.75 Aligned_cols=30 Identities=37% Similarity=0.721 Sum_probs=26.7
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccH
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHF 91 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~ 91 (529)
..+.+|.||||++. .|+.|..++|=.+||.
T Consensus 175 ddkGECvICLEdL~------~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLE------AGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhcc------CCCceeccceEEEeec
Confidence 45688999999997 7899999999999995
No 168
>PTZ00395 Sec24-related protein; Provisional
Probab=88.06 E-value=70 Score=39.80 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=114.3
Q ss_pred ceeEEEE--ecCC---cchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCeEEe--------------------------e
Q 009657 264 ATDLVLV--ASPN---GPHLRLLKQSMALVVFSLR-PNDRLAIVTYSSAAARV--------------------------F 311 (529)
Q Consensus 264 P~DLV~V--GSM~---G~kL~l~K~Am~~vi~~L~-~~DrlsIVtFss~a~~l--------------------------~ 311 (529)
|.-.+|| -|+. ..=+..+-++++..|+.|. +.-||+||+|++..+-. +
T Consensus 952 PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQMLVV 1031 (1560)
T PTZ00395 952 PPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQVIVM 1031 (1560)
T ss_pred CCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceEEee
Confidence 3345566 3443 3346667777777777774 56799999999865210 0
Q ss_pred -----cCcccC--------HHhHHHHHHHHhcccc------CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc
Q 009657 312 -----PLKRMT--------SYGKRMALQVIDRLFY------MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 312 -----pl~~mt--------~~~k~~a~~~I~~L~a------~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~ 372 (529)
|+.++. .+.|..+...|+.|.. ..+..++.||+.|+++|+... ...+|+++.-..++.
T Consensus 1032 SDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~G---GGGKIiVF~SSLPni 1108 (1560)
T PTZ00395 1032 SDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERN---GLGSICMFYTTTPNC 1108 (1560)
T ss_pred cCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCC
Confidence 111111 2456666666666632 345678999999999998752 223444444443321
Q ss_pred ------------------------hhhhc---ccccccEEEEeeeeeccC-C------------------hhh----HHH
Q 009657 373 ------------------------YHAIN---LQVPFPVHRFHVGFGFGS-S------------------NGF----VMH 402 (529)
Q Consensus 373 ------------------------~~~~~---~~~~v~I~TfgvGfGfG~-d------------------~~~----~~~ 402 (529)
|+.+. .+.+|.|..|-.+-.+-. | ..| -..
T Consensus 1109 GpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsqYvDVDVATLg~Lsr~TGGqlyyYPnFna~rD~~ 1188 (1560)
T PTZ00395 1109 GIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSNNVRVCVPSLQYVAQNTGGKILFVENFLWQKDYK 1188 (1560)
T ss_pred CCCcccccccccccccccccchHHHHHHHHHHHhcCCceEEEEccCcccccccccccchhcccceeEEEeCCCcccccHH
Confidence 11111 144566665522211100 0 011 122
Q ss_pred HHHHHHHhhhc--eeeeeEEEEEe----------------e----CCceEEcCCcCCCcEEEEEEEeCC------eeeEE
Q 009657 403 EFEEFLATLLG--GNVQEIQLRIG----------------E----EARIIRLGELRGGEERRILLDLGE------CEDVR 454 (529)
Q Consensus 403 ~f~~~la~~l~--~va~dv~l~i~----------------~----~~~~v~lGdL~age~r~~L~el~~------~~~~~ 454 (529)
.|...|...+. .++=+..+.|. + ..+.+.++.|-.++...|++++++ ...++
T Consensus 1189 KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~~~~~AYFQ 1268 (1560)
T PTZ00395 1189 EIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISESKKQIYFQ 1268 (1560)
T ss_pred HHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccCCCCcEEEE
Confidence 34444444443 35556655552 1 124577899999999999999842 23578
Q ss_pred EEEEEecCCcceeee
Q 009657 455 VEYSYVEGGIDECIR 469 (529)
Q Consensus 455 v~~~Y~dp~~~e~~~ 469 (529)
+.|-|....+...|+
T Consensus 1269 aALLYTSssGERRIR 1283 (1560)
T PTZ00395 1269 CACIYTNLWGDRFVR 1283 (1560)
T ss_pred EEEeeccCCCcEEEE
Confidence 899999876665553
No 169
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.06 E-value=0.31 Score=48.97 Aligned_cols=53 Identities=23% Similarity=0.580 Sum_probs=36.4
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCC-----CcccHhHHHHHhh---C----CCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCS-----HAFHFACISSNVR---H----GSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~-----H~FH~~CI~~Wl~---~----~~~~CPlCR~~~~ 113 (529)
..+..|-||+..=+ ....+-..-||. |--|..|+..|.. . +..+||-|++++-
T Consensus 18 e~eR~CWiCF~Tde-----Dn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDE-----DNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCc-----ccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 34568999998643 122232444554 6899999999995 1 2357999999874
No 170
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=87.87 E-value=3.2 Score=46.22 Aligned_cols=117 Identities=9% Similarity=0.128 Sum_probs=78.9
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEEeCCC------eEEe--ecCcccCHH--hH----HHHHHHHhccccCCCCChHH
Q 009657 276 PHLRLLKQSMALVVFSLRPNDRLAIVTYSSA------AARV--FPLKRMTSY--GK----RMALQVIDRLFYMGQADPIE 341 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~------a~~l--~pl~~mt~~--~k----~~a~~~I~~L~a~GgTni~~ 341 (529)
+..+++-.++..+++...++.++--.-|... ..-. +.+.+.+.. +. ..-+.++-.++.-|-||.+.
T Consensus 316 N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaP 395 (529)
T KOG1327|consen 316 NPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSP 395 (529)
T ss_pred CHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHH
Confidence 5677888888888888888889998888766 2222 223333221 22 33455667788899999999
Q ss_pred HHHHHHHHHHhccC-CCCCCEEEEccCCCCcchhh----hcccccccEEEEeeeee
Q 009657 342 GLKKGIKILEDRAH-KNPQSCILHLSDTPTRTYHA----INLQVPFPVHRFHVGFG 392 (529)
Q Consensus 342 gL~~A~~~l~~~~~-~n~v~~IILLTDG~~~~~~~----~~~~~~v~I~TfgvGfG 392 (529)
=+..++++.++... ....-.++++|||+.++... +......|++-+.||.|
T Consensus 396 II~~va~~a~~~~~~~~qY~VLlIitDG~vTdm~~T~~AIV~AS~lPlSIIiVGVG 451 (529)
T KOG1327|consen 396 IINHVARIAQQSGNTAGQYHVLLIITDGVVTDMKETRDAIVSASDLPLSIIIVGVG 451 (529)
T ss_pred HHHHHHHHHHHhccCCcceEEEEEEeCCccccHHHHHHHHHhhccCCeEEEEEEeC
Confidence 99999999988653 12334588899999877432 22345566666655555
No 171
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.32 E-value=0.53 Score=47.14 Aligned_cols=53 Identities=11% Similarity=0.314 Sum_probs=41.1
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
+....|+||.+.+.+. -.-...-+|||+|+..|....++... +||+|-.+.++
T Consensus 219 s~ryiCpvtrd~LtNt-----~~ca~Lr~sg~Vv~~ecvEklir~D~-v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNT-----TPCAVLRPSGHVVTKECVEKLIRKDM-VDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCc-----cceEEeccCCcEeeHHHHHHhccccc-cccCCCCcCcc
Confidence 3457899999998621 12335667999999999999887644 99999988776
No 172
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.92 E-value=0.59 Score=47.84 Aligned_cols=51 Identities=20% Similarity=0.510 Sum_probs=40.6
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
.|++|..+.. ....-....-+|+|..|-+|++.-...|...||.|-...+-
T Consensus 2 ~Cp~CKt~~Y----~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRY----LNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCccccccee----cCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 5999988765 23445555669999999999999988888899999876543
No 173
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=85.50 E-value=0.47 Score=50.39 Aligned_cols=29 Identities=28% Similarity=0.823 Sum_probs=22.6
Q ss_pred CCCcccHhHHHHHhh------------CCCCcccccccccc
Q 009657 85 CSHAFHFACISSNVR------------HGSVTCPICRAHWT 113 (529)
Q Consensus 85 C~H~FH~~CI~~Wl~------------~~~~~CPlCR~~~~ 113 (529)
|.=++|..|+.+|.. .++..||.||+++-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 455778999999995 23458999999864
No 174
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=85.41 E-value=0.8 Score=43.07 Aligned_cols=54 Identities=22% Similarity=0.580 Sum_probs=35.2
Q ss_pred cccccccccccccCCCCCCCcceEeC-----------CCCCcc-cHhHHHHHhhC-------------------------
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTA-----------QCSHAF-HFACISSNVRH------------------------- 100 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~-----------~C~H~F-H~~CI~~Wl~~------------------------- 100 (529)
+..|+||||.-. .++..+ -|+-.| |..|++++-+.
T Consensus 2 d~~CpICme~PH--------NAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (162)
T PF07800_consen 2 DVTCPICMEHPH--------NAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESS 73 (162)
T ss_pred CccCceeccCCC--------ceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccc
Confidence 458999999753 233222 155443 78999987640
Q ss_pred -----CCCcccccccccccCCcCC
Q 009657 101 -----GSVTCPICRAHWTQLPRNL 119 (529)
Q Consensus 101 -----~~~~CPlCR~~~~~~p~~~ 119 (529)
....||+||.+++......
T Consensus 74 ~~~~~~~L~CPLCRG~V~GWtvve 97 (162)
T PF07800_consen 74 ESQEQPELACPLCRGEVKGWTVVE 97 (162)
T ss_pred cccccccccCccccCceeceEEch
Confidence 1357999999988765543
No 175
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=85.14 E-value=0.39 Score=37.30 Aligned_cols=34 Identities=21% Similarity=0.528 Sum_probs=27.1
Q ss_pred CcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 77 GQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 77 ~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
+..-..++|+|.-+..|...+-.. -||+|.+++.
T Consensus 17 ~~~~~~~pCgH~I~~~~f~~~rYn---gCPfC~~~~~ 50 (55)
T PF14447_consen 17 GTKGTVLPCGHLICDNCFPGERYN---GCPFCGTPFE 50 (55)
T ss_pred ccccccccccceeeccccChhhcc---CCCCCCCccc
Confidence 355668899999999999876443 7999998764
No 176
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=84.75 E-value=7.4 Score=38.93 Aligned_cols=109 Identities=21% Similarity=0.364 Sum_probs=64.3
Q ss_pred CCceeEEEE--ec-CCcchHHHHHH-HHHHHHHhcC-------------CCCeEEEEEeCCCeEEeecCc-ccC-HHhHH
Q 009657 262 QPATDLVLV--AS-PNGPHLRLLKQ-SMALVVFSLR-------------PNDRLAIVTYSSAAARVFPLK-RMT-SYGKR 322 (529)
Q Consensus 262 r~P~DLV~V--GS-M~G~kL~l~K~-Am~~vi~~L~-------------~~DrlsIVtFss~a~~l~pl~-~mt-~~~k~ 322 (529)
..-.||||| |+ +-|.=+..+|. =+.-+++.|. ..-.++||+|.+..-.--++. ... -.+-.
T Consensus 11 ~~~~~vVfvvEgTAalgpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~ 90 (226)
T PF11265_consen 11 PPQAQVVFVVEGTAALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQ 90 (226)
T ss_pred CccceEEEEEecchhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHH
Confidence 345799999 42 22443333333 2233444443 235789999987632211111 110 02567
Q ss_pred HHHHHHhccccCCC-----CChHHHHHHHHHHHHhccC----CC---CCCEEEEccCCCC
Q 009657 323 MALQVIDRLFYMGQ-----ADPIEGLKKGIKILEDRAH----KN---PQSCILHLSDTPT 370 (529)
Q Consensus 323 ~a~~~I~~L~a~Gg-----Tni~~gL~~A~~~l~~~~~----~n---~v~~IILLTDG~~ 370 (529)
.+++.|++|...|| +++.+||..|++++++... .. .-+..||++--.+
T Consensus 91 ~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP 150 (226)
T PF11265_consen 91 KFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPP 150 (226)
T ss_pred HHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCC
Confidence 88999999986433 3488999999999985321 11 2467899987765
No 177
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.40 E-value=0.5 Score=48.33 Aligned_cols=29 Identities=28% Similarity=0.779 Sum_probs=23.4
Q ss_pred CCCcccHhHHHHHhh------------CCCCcccccccccc
Q 009657 85 CSHAFHFACISSNVR------------HGSVTCPICRAHWT 113 (529)
Q Consensus 85 C~H~FH~~CI~~Wl~------------~~~~~CPlCR~~~~ 113 (529)
|.-.+|.+|+.+|.. .++-+||+||+++-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 566889999999984 34568999999875
No 178
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=82.25 E-value=5.9 Score=42.37 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=60.1
Q ss_pred ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCCChHHHHHHHH
Q 009657 271 ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGLKKGI 347 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL~~A~ 347 (529)
|||...+-+++|+-.-.+---|+ ..--|-.|.-.+.|+.|-.= --=...-+|||-+..||+++.
T Consensus 257 GSM~~~~KdlAkrFF~lL~~FL~~kYenveivfIrHht~A~EVdE~-------------dFF~~~esGGTivSSAl~~m~ 323 (423)
T COG2718 257 GSMDQSEKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTEAKEVDET-------------DFFYSQESGGTIVSSALKLML 323 (423)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcccceeEEEEEeecCcceecchh-------------hceeecCCCCeEeHHHHHHHH
Confidence 99999999999997665544453 33344445555566654311 111345689999999999999
Q ss_pred HHHHhccCCCCCC-EEEEccCCCC
Q 009657 348 KILEDRAHKNPQS-CILHLSDTPT 370 (529)
Q Consensus 348 ~~l~~~~~~n~v~-~IILLTDG~~ 370 (529)
+++++++....-+ -.+-.|||++
T Consensus 324 evi~ErYp~aeWNIY~fqaSDGDN 347 (423)
T COG2718 324 EVIKERYPPAEWNIYAFQASDGDN 347 (423)
T ss_pred HHHHhhCChhheeeeeeeecCCcc
Confidence 9999987554332 4678899976
No 179
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.18 E-value=0.86 Score=41.63 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=36.1
Q ss_pred cccccccccccccCCCCCCCcceEeCC---CCCcccHhHHHHHhhCC--CCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQ---CSHAFHFACISSNVRHG--SVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~---C~H~FH~~CI~~Wl~~~--~~~CPlCR~~~~~ 114 (529)
-.+|.||.|.-. +..|.-| ||-..+..|-...++.- .++||+|+..++.
T Consensus 80 lYeCnIC~etS~--------ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSA--------EERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccc--------hhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 468999999743 3333332 89899999998877733 3689999998864
No 180
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.83 E-value=0.56 Score=46.75 Aligned_cols=58 Identities=19% Similarity=0.452 Sum_probs=43.8
Q ss_pred cccccccccccccCCCCCCCcceE-eCCCCCcccHhHHHHHhhCCCCccc--ccccccccCCcCC
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIF-TAQCSHAFHFACISSNVRHGSVTCP--ICRAHWTQLPRNL 119 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~-~~~C~H~FH~~CI~~Wl~~~~~~CP--lCR~~~~~~p~~~ 119 (529)
+..|+||..+.. -.+.-.+. ..+|-|..|-+|+++-+..|...|| -|.+-++-+-|..
T Consensus 10 d~~CPvCksDrY----LnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~kf~~ 70 (314)
T COG5220 10 DRRCPVCKSDRY----LNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIKFIK 70 (314)
T ss_pred cccCCccccccc----cCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhcccc
Confidence 458999998875 22333443 3459999999999999998888999 8988776655543
No 181
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=81.70 E-value=1.5 Score=36.36 Aligned_cols=54 Identities=19% Similarity=0.630 Sum_probs=24.3
Q ss_pred ccccccccccccccCCCCCCCcceEe--CCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFT--AQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~--~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
+...|-||-+++.. + ....+|. -+|+--.+..|..-=.+.+++.||-|+.+++.
T Consensus 8 ~~qiCqiCGD~VGl---~-~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGL---T-ENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-----SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCcccc---C-CCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 35689999999862 1 2223444 46888889999987777888899999988764
No 182
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.41 E-value=0.66 Score=49.91 Aligned_cols=38 Identities=21% Similarity=0.545 Sum_probs=27.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR 99 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~ 99 (529)
...+|.||..+.. . .......+.|+|.|++.|+.+.+.
T Consensus 145 ~~~~C~iC~~e~~----~-~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDP----E-AEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccc----c-HhhhHHHhcccchhhhHHhHHHhh
Confidence 3568999994432 1 223333788999999999999887
No 183
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.85 E-value=0.81 Score=45.12 Aligned_cols=38 Identities=32% Similarity=0.701 Sum_probs=29.6
Q ss_pred cccccccccccCCCCCCCcceEeCCCCC-cccHhHHHHHhhCCCCcccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSH-AFHFACISSNVRHGSVTCPICRAH 111 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H-~FH~~CI~~Wl~~~~~~CPlCR~~ 111 (529)
.|-+|.+. +..+.++||.| .+|..|-.+ + .+||+|+..
T Consensus 160 ~Cr~C~~~---------~~~VlllPCrHl~lC~~C~~~-~----~~CPiC~~~ 198 (207)
T KOG1100|consen 160 SCRKCGER---------EATVLLLPCRHLCLCGICDES-L----RICPICRSP 198 (207)
T ss_pred cceecCcC---------CceEEeecccceEeccccccc-C----ccCCCCcCh
Confidence 38888875 35688999999 788888875 2 279999875
No 184
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=79.61 E-value=5.2 Score=43.74 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=67.7
Q ss_pred cceeeeeccccCCCceeEEEE----ecCCcc--hHHHHHHHHHHHHHhcCCCCeEEEEEeCCCe----------------
Q 009657 250 RRAAYLSVKLAHQPATDLVLV----ASPNGP--HLRLLKQSMALVVFSLRPNDRLAIVTYSSAA---------------- 307 (529)
Q Consensus 250 ~~~~~~~v~~~~r~P~DLV~V----GSM~G~--kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a---------------- 307 (529)
.+..-++++++..-|+||.++ +||..+ +|..+-..+..-++.+..+=|+++=+|-+..
T Consensus 88 ~~~f~v~~~~a~~yPvDLYyLmDlS~Sm~ddl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l~~pc 167 (426)
T PF00362_consen 88 PVTFNVTVRPAEDYPVDLYYLMDLSYSMKDDLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKLKNPC 167 (426)
T ss_dssp EEEEEEEEEBSSS--EEEEEEEE-SGGGHHHHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCHHSTS
T ss_pred eEEEEEEEeeccccceeEEEEeechhhhhhhHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhhcCcc
Confidence 344667788899999999988 799753 3444445556667777888899999997753
Q ss_pred -------------EEeecCcccCHHhHHHHHHHHhccccCCCCC----hHHHHHHHHHHHHh-ccCCCCCCEEEEccCC
Q 009657 308 -------------ARVFPLKRMTSYGKRMALQVIDRLFYMGQAD----PIEGLKKGIKILED-RAHKNPQSCILHLSDT 368 (529)
Q Consensus 308 -------------~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTn----i~~gL~~A~~~l~~-~~~~n~v~~IILLTDG 368 (529)
+-+++|+ .+.......|+....+|.-+ ..+||..|+---+. .+..+...-||+.||+
T Consensus 168 ~~~~~~c~~~~~f~~~l~Lt----~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~ 242 (426)
T PF00362_consen 168 PSKNPNCQPPFSFRHVLSLT----DDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDA 242 (426)
T ss_dssp CCTTS--B---SEEEEEEEE----S-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS
T ss_pred cccCCCCCCCeeeEEeeccc----chHHHHHHhhhhccccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCC
Confidence 2223333 25677888888877655543 33445444321122 2334566678899997
No 185
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=77.55 E-value=2.1 Score=32.58 Aligned_cols=43 Identities=21% Similarity=0.530 Sum_probs=22.0
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----CCCCcccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----HGSVTCPICRAH 111 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~~~~CPlCR~~ 111 (529)
.|+|....|. -++....|.|.-+|. +..|+. .+.-.||+|.++
T Consensus 4 ~CPls~~~i~--------~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIR--------IPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-S--------SEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEE--------eCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 6889998886 688888999986655 334443 444579999863
No 186
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.50 E-value=2.6 Score=43.20 Aligned_cols=52 Identities=29% Similarity=0.695 Sum_probs=37.5
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCC-----cccHhHHHHHhh-CCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSH-----AFHFACISSNVR-HGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H-----~FH~~CI~~Wl~-~~~~~CPlCR~~~~~ 114 (529)
...|-||+++.. ...+. ....+|.- ..|..|+..|.. .++.+|.+|......
T Consensus 78 ~~~cRIc~~~~~----~~~~~-~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDE----ESNGL-LLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccc----ccccc-ccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 578999999874 11111 45666663 679999999998 445699999887654
No 187
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.30 E-value=1.7 Score=46.35 Aligned_cols=50 Identities=20% Similarity=0.456 Sum_probs=41.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCC--Ccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGS--VTCPICRAH 111 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~--~~CPlCR~~ 111 (529)
-+...|+|=.+.- .+..++..+.|||+....-|..-.+.+. ..||.|-..
T Consensus 332 HSvF~CPVlKeqt------sdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 332 HSVFICPVLKEQT------SDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred cceeecccchhhc------cCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 3567899988864 3678899999999999999999888877 889999543
No 188
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=75.98 E-value=0.96 Score=46.70 Aligned_cols=31 Identities=26% Similarity=0.714 Sum_probs=23.6
Q ss_pred EeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 81 FTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 81 ~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
+..+|.|+||..|-..- ..+.||.|--++..
T Consensus 105 RmIPCkHvFCl~CAr~~---~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARSD---SDKICPLCDDRVQR 135 (389)
T ss_pred cccccchhhhhhhhhcC---ccccCcCcccHHHH
Confidence 56899999999998642 23589999876543
No 189
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.39 E-value=3.2 Score=47.74 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=36.0
Q ss_pred ccccccccccccccCCCCCCCcce-EeCCCCCcccHhHHHHHhhC-----CCCcccccccccccCCcCC
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAI-FTAQCSHAFHFACISSNVRH-----GSVTCPICRAHWTQLPRNL 119 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~-~~~~C~H~FH~~CI~~Wl~~-----~~~~CPlCR~~~~~~p~~~ 119 (529)
...+|.||.-.+... .++..+ -.-.|+|.||..||..|..+ ..-.|+.|..-+.-+-...
T Consensus 95 ~s~Ss~~C~~E~S~~---~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a 160 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPD---VDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA 160 (1134)
T ss_pred cccccchhheecCCc---ccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc
Confidence 345666666665411 011111 12339999999999999962 1235788888766555443
No 190
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=75.22 E-value=21 Score=34.80 Aligned_cols=108 Identities=13% Similarity=0.220 Sum_probs=78.5
Q ss_pred chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCeEE-eecCcccCHHhHHHHHHHHhccccCCCCChHHHHHHHHHHHH
Q 009657 276 PHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAAAR-VFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGLKKGIKILE 351 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a~~-l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL~~A~~~l~ 351 (529)
++...-|.++.+++..= +|...++||+-....-. +.-+| ..+-+++..+..+.-.|+.++..+|..|.-.|+
T Consensus 24 tRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T----~~~gkilt~lhd~~~~g~a~~~~~lqiaql~lk 99 (243)
T COG5148 24 TRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPT----KQRGKILTFLHDIRLHGGADIMRCLQIAQLILK 99 (243)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccch----hhhhHHHHHhccccccCcchHHHHHHHHHHHHh
Confidence 58889999999888753 57889999998765444 33333 357889999999999999999999999999999
Q ss_pred hccCCCCCCEEEEccCCCCc-chhhh-----c-ccccccEEEE
Q 009657 352 DRAHKNPQSCILHLSDTPTR-TYHAI-----N-LQVPFPVHRF 387 (529)
Q Consensus 352 ~~~~~n~v~~IILLTDG~~~-~~~~~-----~-~~~~v~I~Tf 387 (529)
.|..+....+|+.+--.+.. +.+.+ + .+.+|.|--+
T Consensus 100 hR~nk~q~qriVaFvgSpi~esedeLirlak~lkknnVAidii 142 (243)
T COG5148 100 HRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDII 142 (243)
T ss_pred cccCCccceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEE
Confidence 88766666777766533221 11221 1 2566777776
No 191
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=75.08 E-value=1.2 Score=43.81 Aligned_cols=50 Identities=26% Similarity=0.658 Sum_probs=39.3
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
++-..|.+|.+-.- ..+.-..|+-.+|..|+...+.. ...||.|.--|..
T Consensus 179 dnlk~Cn~Ch~LvI--------qg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVI--------QGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHHHHhHhHHHhh--------eeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 45578999998764 34455668889999999999988 4499999887753
No 192
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.76 E-value=9.2 Score=39.94 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=70.2
Q ss_pred cccceeeeeccccCCCceeEEEE---ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHH
Q 009657 248 SNRRAAYLSVKLAHQPATDLVLV---ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMA 324 (529)
Q Consensus 248 ~~~~~~~~~v~~~~r~P~DLV~V---GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a 324 (529)
.++++-||.-+.....+.-+|.| |||...-++.+-.-+..++. .++-++.||--+..++....+++-..
T Consensus 246 ~~rR~~yL~g~~~e~l~~i~vaVDtSGS~~d~ei~a~~~Ei~~Il~--~~~~eltli~~D~~v~~~~~~r~g~~------ 317 (396)
T COG3864 246 KDRRQPYLRGKLSEHLIKIVVAVDTSGSMTDAEIDAAMTEIFDILK--NKNYELTLIECDNIVRRMYRVRKGRD------ 317 (396)
T ss_pred cccccccccccchhhhhheEEEEecCCCccHHHHHHHHHHHHHHHh--CCCcEEEEEEecchhhhhhccCCccc------
Confidence 34455666655666677667777 99988766666555555552 47889999999988887665543211
Q ss_pred HHHHhccccCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCc
Q 009657 325 LQVIDRLFYMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTR 371 (529)
Q Consensus 325 ~~~I~~L~a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~ 371 (529)
.=..+..+|||++...+. .+++... ....|.+|||...
T Consensus 318 --~~~~~~ggG~Tdf~Pvfe----ylek~~~---~~~lIyfTDG~gd 355 (396)
T COG3864 318 --MKKKLDGGGGTDFSPVFE----YLEKNRM---ECFLIYFTDGMGD 355 (396)
T ss_pred --CCcccCCCCCccccHHHH----HHHhhcc---cceEEEEccCCCC
Confidence 112466678899877654 4555322 2578999999653
No 193
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=74.24 E-value=21 Score=38.60 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=63.2
Q ss_pred ceeEEEE----ecCCc-----chHHHHHHHHHHH-HHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc
Q 009657 264 ATDLVLV----ASPNG-----PHLRLLKQSMALV-VFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY 333 (529)
Q Consensus 264 P~DLV~V----GSM~G-----~kL~l~K~Am~~v-i~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a 333 (529)
..+++++ .||.. +|++.+-.++..+ ...+..+|++++.+|++....+++... ..+....++.++..+..
T Consensus 224 ~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~~~~~~p~~-G~~~l~~~l~~l~~~~~ 302 (416)
T COG1721 224 GRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGGPKWIPPSR-GRRHLARILKALALLRP 302 (416)
T ss_pred CceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCcceeeCCCc-chHHHHHHHHHhhccCC
Confidence 6788877 58873 6888777766555 566789999999999988877777654 23455666666666666
Q ss_pred CCC-CChHHHHHHHHHHHHhccCCCCCCEEEEccCCCC
Q 009657 334 MGQ-ADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPT 370 (529)
Q Consensus 334 ~Gg-Tni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~ 370 (529)
.+. |+...+..+ ...+.. .-+.++++||=..
T Consensus 303 ~~~~~~~~~~~~~-~~~l~~-----~~~~~~~~~~l~~ 334 (416)
T COG1721 303 APEETDYIRRVSK-LDFLPP-----RRPLVILITDLAR 334 (416)
T ss_pred CCcchhHHHHhhh-hhccCc-----ccceEEEeehhhc
Confidence 655 333333222 222222 2225777776543
No 194
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.46 E-value=2.2 Score=45.99 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=39.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHW 112 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~ 112 (529)
.+..|++|.-.++ -.+|..-++-.|+|.|+..|...|..++. .|..|-+..
T Consensus 305 ~wr~CpkC~~~ie----~~~GCnhm~CrC~~~fcy~C~~~~~~~~~-~~~~~~r~~ 355 (384)
T KOG1812|consen 305 RWRQCPKCKFMIE----LSEGCNHMTCRCGHQFCYMCGGDWKTHNG-ECYECCRYK 355 (384)
T ss_pred hcCcCcccceeee----ecCCcceEEeeccccchhhcCcchhhCCc-cccCccccc
Confidence 4678999998876 33567778888999999999999988756 776665544
No 195
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.13 E-value=1.5 Score=49.30 Aligned_cols=48 Identities=25% Similarity=0.472 Sum_probs=34.1
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
-.|.||+..|- .+....+.+.|||..|.+|+..-... +||.=+-.|..
T Consensus 12 l~c~ic~n~f~-----~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~ 59 (861)
T KOG3161|consen 12 LLCDICLNLFV-----VQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSS 59 (861)
T ss_pred hhchHHHHHHH-----HHhcCcccccccchHHHHHHHhHhhc---cCCCCccccch
Confidence 46999999885 12344566789999999999975543 79933444543
No 196
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.66 E-value=15 Score=42.02 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=36.7
Q ss_pred ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEe
Q 009657 271 ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARV 310 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l 310 (529)
-=|..+.|+.+|.++...++.|.++-.|+||+|...+++.
T Consensus 130 tc~~eeeL~~LkssL~~~l~lLP~~alvGlItfg~~v~v~ 169 (745)
T KOG1986|consen 130 TCMDEEELQALKSSLKQSLSLLPENALVGLITFGTMVQVH 169 (745)
T ss_pred eccChHHHHHHHHHHHHHHhhCCCcceEEEEEecceEEEE
Confidence 5688899999999999999999999999999999987654
No 197
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.52 E-value=27 Score=40.82 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=62.5
Q ss_pred ceeEEEE-----ecCCcchHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCeEEee------------------cCcccC-
Q 009657 264 ATDLVLV-----ASPNGPHLRLLKQSMALVVFSLR--PNDRLAIVTYSSAAARVF------------------PLKRMT- 317 (529)
Q Consensus 264 P~DLV~V-----GSM~G~kL~l~K~Am~~vi~~L~--~~DrlsIVtFss~a~~l~------------------pl~~mt- 317 (529)
|.=.||| -||.-.=|+.+++++..-++.|. +..|+++|+|++..+-.- +...|.
T Consensus 294 Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d~flp~pd 373 (887)
T KOG1985|consen 294 PAVYVFLIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDDPFLPMPD 373 (887)
T ss_pred CceEEEEEEeehHhhhhhHHHHHHHHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCceeeeccccccccCCch
Confidence 3444555 35555568999999999999997 667999999998654221 111111
Q ss_pred ------HHhHHHHHHHHhcc---cc---CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCC
Q 009657 318 ------SYGKRMALQVIDRL---FY---MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDT 368 (529)
Q Consensus 318 ------~~~k~~a~~~I~~L---~a---~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG 368 (529)
.+-|+.+...++.| -. .-+-+++.||+.|++++..-. .+|+.+.-+
T Consensus 374 ~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~G-----Gri~vf~s~ 431 (887)
T KOG1985|consen 374 SLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTG-----GRISVFQST 431 (887)
T ss_pred hheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcC-----CeEEEEecc
Confidence 12233444444443 22 345679999999999998742 245555444
No 199
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=66.05 E-value=2 Score=32.01 Aligned_cols=45 Identities=27% Similarity=0.716 Sum_probs=32.8
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-----CCCCccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-----HGSVTCPICRA 110 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-----~~~~~CPlCR~ 110 (529)
.|.||.... ..+..+.=-.|+..||..|+..-.. ...-.||.|+.
T Consensus 1 ~C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcC------CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 388898843 2456677778999999999987543 22457998874
No 200
>PLN02189 cellulose synthase
Probab=65.83 E-value=5.2 Score=47.85 Aligned_cols=55 Identities=20% Similarity=0.614 Sum_probs=39.5
Q ss_pred ccccccccccccccCCCCCCCcc-eEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQA-IFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~-~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|.||-+++.. +..|+. +.--+|+---|..|-.-=.+.+++.||.|+.+++.
T Consensus 33 ~~~~C~iCgd~vg~---~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGL---TVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCc---CCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 34589999999862 222332 23345888899999965445677899999999983
No 201
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=65.48 E-value=1.9 Score=49.24 Aligned_cols=45 Identities=27% Similarity=0.682 Sum_probs=34.9
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh--CCCCcccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR--HGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~--~~~~~CPlCR~~ 111 (529)
..+|+||++.+. .+ ..+.|.|.|+..|+..-+. .+...||+|+..
T Consensus 21 ~lEc~ic~~~~~--------~p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~ 67 (684)
T KOG4362|consen 21 ILECPICLEHVK--------EP-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSD 67 (684)
T ss_pred hccCCceeEEee--------cc-chhhhhHHHHhhhhhceeeccCccccchhhhhh
Confidence 358999999986 11 5778999999999987554 334689999954
No 202
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=62.23 E-value=22 Score=39.02 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=27.7
Q ss_pred ecCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 009657 271 ASPNGPHLRLLKQSMALVVFSLR-PNDRLAIVTYSS 305 (529)
Q Consensus 271 GSM~G~kL~l~K~Am~~vi~~L~-~~DrlsIVtFss 305 (529)
|||.|.++..+-..+-.+...|. -+-.+-|..|.+
T Consensus 424 GSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT 459 (620)
T COG4547 424 GSMRGRPITVAATCADILARTLERCGVKVEILGFTT 459 (620)
T ss_pred CCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeee
Confidence 99999999999988888888883 355566666655
No 203
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=60.98 E-value=5.5 Score=41.48 Aligned_cols=45 Identities=29% Similarity=0.558 Sum_probs=34.0
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.--+|+||.+.+. .+++.-.=||.-|..|-.+ . ...||.||-.+.
T Consensus 47 ~lleCPvC~~~l~--------~Pi~QC~nGHlaCssC~~~---~-~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLS--------PPIFQCDNGHLACSSCRTK---V-SNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCc--------ccceecCCCcEehhhhhhh---h-cccCCccccccc
Confidence 4568999999996 5666655689999998864 2 237999998754
No 204
>PLN02436 cellulose synthase A
Probab=60.08 E-value=7.6 Score=46.61 Aligned_cols=54 Identities=22% Similarity=0.652 Sum_probs=39.3
Q ss_pred ccccccccccccccCCCCCCCcceEe--CCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFT--AQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~--~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|-||-+++.. +..|+ +|. -+|+---|..|..-=.+.+++.||.|+++++.
T Consensus 35 ~~~iCqICGD~Vg~---t~dGe-~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIEL---TVDGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCc---CCCCC-EEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 34589999999862 22333 343 35777899999965445677899999999983
No 205
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.03 E-value=4.9 Score=41.22 Aligned_cols=36 Identities=25% Similarity=0.571 Sum_probs=25.4
Q ss_pred ccccccccccccCCCCCCCcce-EeCCCCCcccHhHHHHHhhC
Q 009657 59 NLCAICLEALSYSSGGSPGQAI-FTAQCSHAFHFACISSNVRH 100 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~-~~~~C~H~FH~~CI~~Wl~~ 100 (529)
-.|.+|.|.++ +-+-+ .-.--+|.|||.|-.+.++.
T Consensus 269 LcCTLC~ERLE------DTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 269 LCCTLCHERLE------DTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred eeehhhhhhhc------cCceeecCCCcccceecccCHHHHHh
Confidence 56999999996 21211 11224899999999998874
No 206
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.00 E-value=7.9 Score=43.57 Aligned_cols=45 Identities=27% Similarity=0.705 Sum_probs=34.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
.....|.||++++. .....|. |..|...|+..+. +||+|+....+
T Consensus 477 ~~~~~~~~~~~~~~----------~~~~~~~---~~~~l~~~~~~~~-~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEMS----------ARITPCS---HALCLRKWLYVQE-VCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHHH----------hcccccc---chhHHHhhhhhcc-ccCCCchhhhc
Confidence 45678999999871 1234466 9999999999866 99999987654
No 207
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=58.23 E-value=12 Score=45.09 Aligned_cols=55 Identities=18% Similarity=0.571 Sum_probs=39.1
Q ss_pred ccccccccccccccCCCCCCCc-ceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQ-AIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~-~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
+...|-||-+++.. +..|+ -+.--+|+---|+.|-.==.+.+++.||-|+++++.
T Consensus 16 ~~qiCqICGD~vg~---~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 16 GGQVCQICGDNVGK---TVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CCceeeecccccCc---CCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 34589999999862 22233 233346777799999954344677899999999983
No 208
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.82 E-value=4.6 Score=46.60 Aligned_cols=50 Identities=20% Similarity=0.471 Sum_probs=35.4
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRA 110 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~ 110 (529)
-+..|.-|++....+. + .-..+....|+|.||..|+-.-..+++ |-.|..
T Consensus 783 ~e~rc~~c~~~~l~~~-~-~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~~~ 832 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSG-A-AFDSVVVFHCGHMYHKECLMMESLRNA--CNIESG 832 (846)
T ss_pred ehhhhhhhcccccccC-c-ccceeeEEEccchhhhcccccHHHhcc--cChhhc
Confidence 3468999999875221 1 124567788999999999988776544 777754
No 209
>PLN02195 cellulose synthase A
Probab=54.90 E-value=12 Score=44.65 Aligned_cols=55 Identities=24% Similarity=0.560 Sum_probs=39.8
Q ss_pred ccccccccccccccCCCCCCCc-ceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQ-AIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~-~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
+...|.||-+++.. +..|+ -+.--+|+---|+.|-.==-+.|++.||.|+.++++
T Consensus 5 ~~~~c~~cgd~~~~---~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGV---DSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCc---CCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 34589999998862 12233 234457888899999954445677899999999993
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=52.62 E-value=22 Score=37.32 Aligned_cols=48 Identities=23% Similarity=0.567 Sum_probs=35.9
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 111 (529)
-..|+||-+++.. ........+|+|.-|+.|...-..+.. .||.||..
T Consensus 249 ~~s~p~~~~~~~~-----~d~~~lP~~~~~~~~l~~~~t~~~~~~-~~~~~rk~ 296 (327)
T KOG2068|consen 249 PPSCPICYEDLDL-----TDSNFLPCPCGFRLCLFCHKTISDGDG-RCPGCRKP 296 (327)
T ss_pred CCCCCCCCCcccc-----cccccccccccccchhhhhhcccccCC-CCCccCCc
Confidence 4689999998841 223445578999999999988776544 89999954
No 211
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.81 E-value=1.4e+02 Score=30.84 Aligned_cols=112 Identities=13% Similarity=0.211 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHH---hcCCCCeEEEEEeCCCe-EEeecCcc-----cC--------H-----------HhHHHHHHHHh
Q 009657 278 LRLLKQSMALVVF---SLRPNDRLAIVTYSSAA-ARVFPLKR-----MT--------S-----------YGKRMALQVID 329 (529)
Q Consensus 278 L~l~K~Am~~vi~---~L~~~DrlsIVtFss~a-~~l~pl~~-----mt--------~-----------~~k~~a~~~I~ 329 (529)
|..+-+++..++. .|....+|+||+..+.. +.+.|-.. .+ + .-.+.+.+.++
T Consensus 28 l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~~~~~~y~~f~~v~~~v~~~l~~l~~ 107 (279)
T TIGR00627 28 ISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKRLRELLYRDFRTVDETIVEEIKPLMA 107 (279)
T ss_pred HHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCccccccccccccccccchhccchhHHHHHHHHHHHHHHh
Confidence 4444444443333 35789999999987654 44445321 00 0 01122222332
Q ss_pred ccc----cCCCCChHHHHHHHHHHHHhccCC-----CCCCEEEEccCCCCcc--hhhh------cccccccEEEEee
Q 009657 330 RLF----YMGQADPIEGLKKGIKILEDRAHK-----NPQSCILHLSDTPTRT--YHAI------NLQVPFPVHRFHV 389 (529)
Q Consensus 330 ~L~----a~GgTni~~gL~~A~~~l~~~~~~-----n~v~~IILLTDG~~~~--~~~~------~~~~~v~I~Tfgv 389 (529)
... ..+.+.|.+||-+|+--+...... .-.+||++++-+.+.. |..+ ..+.+|+|..+++
T Consensus 108 ~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~~~~~qYi~~mn~Ifaaqk~~I~Idv~~L 184 (279)
T TIGR00627 108 HADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITPDMALQYIPLMNCIFSAQKQNIPIDVVSI 184 (279)
T ss_pred hchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCCCchHHHHHHHHHHHHHHHcCceEEEEEe
Confidence 211 225778999999999888664321 2356899888765532 3322 1377899999944
No 212
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.05 E-value=8.9 Score=42.02 Aligned_cols=35 Identities=29% Similarity=0.680 Sum_probs=29.7
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR 99 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~ 99 (529)
....|.||.+.+. + .+..+.|+|.|+..|....+.
T Consensus 69 ~~~~c~ic~~~~~-------~-~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 69 GDVQCGICVESYD-------G-EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred ccccCCcccCCCc-------c-hhhhcCCCcHHHHHHHHHHhh
Confidence 3568999999874 2 677889999999999999886
No 213
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=50.96 E-value=16 Score=43.89 Aligned_cols=55 Identities=18% Similarity=0.513 Sum_probs=39.8
Q ss_pred ccccccccccccccCCCCCCCc-ceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQ-AIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~-~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
+...|-||-+++.. +..|+ -+.--+|+---|..|..-=.+.+++.||.|+.+++.
T Consensus 14 ~~~~c~iCGd~vg~---~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGV---KEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCc---CCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 45689999999862 22233 233346777899999965445777899999999984
No 214
>PLN02400 cellulose synthase
Probab=50.10 E-value=12 Score=45.16 Aligned_cols=56 Identities=18% Similarity=0.573 Sum_probs=39.1
Q ss_pred ccccccccccccccCCCCCCCc-ceEeCCCCCcccHhHHHHHhhCCCCcccccccccccC
Q 009657 57 AKNLCAICLEALSYSSGGSPGQ-AIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQL 115 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~-~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~ 115 (529)
+...|-||-+++.. +..|+ -+.--+|+---|+.|-.==-+.+++.||-|+.+++..
T Consensus 35 ~gqiCqICGD~VG~---t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGV---TETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCc---CCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccc
Confidence 34589999999862 22233 2333467777999999543346778999999999843
No 215
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=49.42 E-value=5.1 Score=45.21 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=22.6
Q ss_pred eEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 80 IFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 80 ~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
..-..|++.||..|... .+..||.|-+.|+
T Consensus 532 ~rC~~C~avfH~~C~~r----~s~~CPrC~R~q~ 561 (580)
T KOG1829|consen 532 RRCSTCLAVFHKKCLRR----KSPCCPRCERRQK 561 (580)
T ss_pred eeHHHHHHHHHHHHHhc----cCCCCCchHHHHH
Confidence 34457999999999864 3445999987765
No 216
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.08 E-value=12 Score=43.09 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=32.5
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPI 107 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPl 107 (529)
...|.+|-..+. |.-..--.|||.-|-.|+.+|+...+ -||.
T Consensus 779 ~~~CtVC~~vi~-------G~~~~c~~C~H~gH~sh~~sw~~~~s-~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIR-------GVDVWCQVCGHGGHDSHLKSWFFKAS-PCAK 820 (839)
T ss_pred hcCceeecceee-------eeEeecccccccccHHHHHHHHhcCC-CCcc
Confidence 357999988775 44555567999999999999998755 5665
No 217
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=48.88 E-value=7.6 Score=29.65 Aligned_cols=39 Identities=23% Similarity=0.537 Sum_probs=22.6
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-CCCCccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPICRAHW 112 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-~~~~~CPlCR~~~ 112 (529)
...|+.|-+.+. . ..+-.+|...... .....||+|...+
T Consensus 2 ~f~CP~C~~~~~--------~--------~~L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFS--------E--------SSLVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccC--------H--------HHHHHHHHhHCcCCCCCccCCCchhhh
Confidence 357999998663 0 1123344444333 2346899998753
No 218
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=48.73 E-value=79 Score=33.37 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=69.4
Q ss_pred cchHHHHHHHHHHHHHhc---CCCCeEEEEEeCC-CeEEeecCcccCHHhHHHHHHHHhccc-cCCCCChHHHHHHHHHH
Q 009657 275 GPHLRLLKQSMALVVFSL---RPNDRLAIVTYSS-AAARVFPLKRMTSYGKRMALQVIDRLF-YMGQADPIEGLKKGIKI 349 (529)
Q Consensus 275 G~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss-~a~~l~pl~~mt~~~k~~a~~~I~~L~-a~GgTni~~gL~~A~~~ 349 (529)
.+++..+-+.+..+|..+ +|=-.++||+--+ .|.++.. +++ |-+....++.++. ..|.-.+..||+.|.+.
T Consensus 80 P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~---ltg-np~~hI~aL~~~~~~~g~fSLqNaLe~a~~~ 155 (378)
T KOG2807|consen 80 PSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTD---LTG-NPRIHIHALKGLTECSGDFSLQNALELAREV 155 (378)
T ss_pred chHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHH---hcC-CHHHHHHHHhcccccCCChHHHHHHHHHHHH
Confidence 567888888888777766 4556888887654 4555444 443 4556667777776 77888899999999999
Q ss_pred HHhccCCCCCCEEEEccCC---CCcc-hhhhc--ccccccEEEEee
Q 009657 350 LEDRAHKNPQSCILHLSDT---PTRT-YHAIN--LQVPFPVHRFHV 389 (529)
Q Consensus 350 l~~~~~~n~v~~IILLTDG---~~~~-~~~~~--~~~~v~I~Tfgv 389 (529)
|.........-.+|+.+-= ++.+ ++.+. ...+|.++.+|+
T Consensus 156 Lk~~p~H~sREVLii~sslsT~DPgdi~~tI~~lk~~kIRvsvIgL 201 (378)
T KOG2807|consen 156 LKHMPGHVSREVLIIFSSLSTCDPGDIYETIDKLKAYKIRVSVIGL 201 (378)
T ss_pred hcCCCcccceEEEEEEeeecccCcccHHHHHHHHHhhCeEEEEEee
Confidence 9875332211223332221 2222 33333 256788888843
No 219
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.70 E-value=5.8e+02 Score=30.74 Aligned_cols=63 Identities=8% Similarity=0.050 Sum_probs=39.6
Q ss_pred HHHHhhhceeeeeEEEEEe---------e-------CCceEEcCCcCCCcEEEEEEEeC------CeeeEEEEEEEecCC
Q 009657 406 EFLATLLGGNVQEIQLRIG---------E-------EARIIRLGELRGGEERRILLDLG------ECEDVRVEYSYVEGG 463 (529)
Q Consensus 406 ~~la~~l~~va~dv~l~i~---------~-------~~~~v~lGdL~age~r~~L~el~------~~~~~~v~~~Y~dp~ 463 (529)
|........+.-|+.+++. + ....++++.|-.+...++++..+ ...+++..+-|....
T Consensus 649 DL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq~~s~~~fQ~AlLYTti~ 728 (1007)
T KOG1984|consen 649 DLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQDGSDVHFQTALLYTTID 728 (1007)
T ss_pred HHHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEeccccccCCcceeEEEEEEEeccC
Confidence 3333444446666666662 1 23568888888777777666662 235678888898877
Q ss_pred cceee
Q 009657 464 IDECI 468 (529)
Q Consensus 464 ~~e~~ 468 (529)
+...+
T Consensus 729 G~RR~ 733 (1007)
T KOG1984|consen 729 GQRRL 733 (1007)
T ss_pred CceeE
Confidence 66554
No 220
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.33 E-value=18 Score=36.75 Aligned_cols=51 Identities=14% Similarity=0.312 Sum_probs=37.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
.....|+|=--+|. |--.-.+...|||+|-..-+..- ...+|++|.+.+.+
T Consensus 109 ~a~fiCPvtgleMn-----g~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMN-----GKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceec-----ceEEEEEEeccceeccHHHHHHh---hhccccccCCcccc
Confidence 44577999888884 22234567789999998888763 24489999999876
No 221
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=45.21 E-value=11 Score=30.35 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=8.9
Q ss_pred cccHhHHHHHhh
Q 009657 88 AFHFACISSNVR 99 (529)
Q Consensus 88 ~FH~~CI~~Wl~ 99 (529)
-||+.|++.|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999996
No 222
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.90 E-value=17 Score=37.73 Aligned_cols=52 Identities=29% Similarity=0.682 Sum_probs=40.0
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCC
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLP 116 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p 116 (529)
...+.|.||...+..+.+. -.|.|.|+.+|...|...++ .||.|+..-+..-
T Consensus 103 ~~~~~~~~~~g~l~vpt~~--------qg~w~qf~~~~p~~~~~~~~-~~~d~~~~~~pv~ 154 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRI--------QGCWHQFCYVCPKSNFAMGN-DCPDCRGKISPVL 154 (324)
T ss_pred CCccceeeeeeeEEecccc--------cCceeeeeecCCchhhhhhh-ccchhhcCcCcee
Confidence 5667899999888643221 22999999999999999877 8999998765433
No 223
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=43.33 E-value=20 Score=27.89 Aligned_cols=44 Identities=18% Similarity=0.575 Sum_probs=32.2
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccc--cccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPI--CRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPl--CR~~ 111 (529)
...|.+|-+.|+ .+++.++-..|+=.+|+.|-. +.+ .|-+ |...
T Consensus 5 ~~~C~~Cg~~~~-----~~dDiVvCp~CgapyHR~C~~---~~g--~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFK-----DGDDIVVCPECGAPYHRDCWE---KAG--GCINYSCGTG 50 (54)
T ss_pred CccChhhCCccc-----CCCCEEECCCCCCcccHHHHh---hCC--ceEeccCCCC
Confidence 458999999995 245777888999999999954 333 3655 6543
No 224
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=42.79 E-value=17 Score=37.94 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=37.7
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCC--Ccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGS--VTCPICR 109 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~--~~CPlCR 109 (529)
-+...|++-.+.-. ...++..+.|||+.-..-++...++|. ..||.|-
T Consensus 334 Hs~FiCPVlKe~~t------~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 334 HSLFICPVLKELCT------DENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cceeeccccHhhhc------ccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 34577988776543 567889999999999999998877665 5799994
No 225
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=42.48 E-value=13 Score=28.18 Aligned_cols=27 Identities=26% Similarity=0.817 Sum_probs=19.7
Q ss_pred CC-CCcccHhHHHHHhhCCCCcccccccc
Q 009657 84 QC-SHAFHFACISSNVRHGSVTCPICRAH 111 (529)
Q Consensus 84 ~C-~H~FH~~CI~~Wl~~~~~~CPlCR~~ 111 (529)
.| .|..+..|+..-+..+. .||+|..+
T Consensus 17 ~C~dHYLCl~CLt~ml~~s~-~C~iC~~~ 44 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSRSD-RCPICGKP 44 (50)
T ss_dssp E-SS-EEEHHHHHHT-SSSS-EETTTTEE
T ss_pred eecchhHHHHHHHHHhcccc-CCCcccCc
Confidence 35 49999999999888755 89999654
No 226
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=42.28 E-value=31 Score=35.34 Aligned_cols=52 Identities=19% Similarity=0.483 Sum_probs=33.1
Q ss_pred ccccccccccccccCCCCCCCcce-EeCCCCCcccHhHHHHHhh---CCC-----Ccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAI-FTAQCSHAFHFACISSNVR---HGS-----VTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~-~~~~C~H~FH~~CI~~Wl~---~~~-----~~CPlCR~~ 111 (529)
....|-+|.++|.. ++...+. ....|.-.+|+.|+..-+. .++ ..||.|++-
T Consensus 181 ~~~~celc~~ei~e---~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 181 LNVECELCEKEILE---TDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred cchhhHHHHHHhcc---ccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 34689999999941 1111111 1234888999999999443 121 479999984
No 227
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=41.17 E-value=34 Score=35.78 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEEeCCCe
Q 009657 276 PHLRLLKQSMALVVFSLRPNDRLAIVTYSSAA 307 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a 307 (529)
+-|..+++++...++.|.++-|++||+|.|--
T Consensus 218 dEL~~L~~~L~~a~~~L~~gGRl~VIsFHSLE 249 (314)
T COG0275 218 DELEELEEALEAALDLLKPGGRLAVISFHSLE 249 (314)
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEEEecchH
Confidence 46899999999999999999999999998743
No 228
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=40.27 E-value=12 Score=28.77 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=22.3
Q ss_pred ccc--ccccccccCCCCCCCcceEeC-CCCCcccHhHHHHH
Q 009657 60 LCA--ICLEALSYSSGGSPGQAIFTA-QCSHAFHFACISSN 97 (529)
Q Consensus 60 ~C~--ICl~~~~~~~~~~~~~~~~~~-~C~H~FH~~CI~~W 97 (529)
-|+ =|..-+.... +.+...+.- .|+|.|++.|...|
T Consensus 20 ~CP~~~C~~~~~~~~--~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 20 WCPAPDCSAAIIVTE--EEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCCCCcceEEecC--CCCCCeeECCCCCCeECCCCCCcC
Confidence 466 5655443110 123444555 79999999999988
No 229
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=38.15 E-value=21 Score=24.21 Aligned_cols=37 Identities=22% Similarity=0.551 Sum_probs=24.3
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHW 112 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~ 112 (529)
.|..|-+.+. ++... ...=+..||..|. .|..|+..+
T Consensus 1 ~C~~C~~~i~------~~~~~-~~~~~~~~H~~Cf---------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIR------GGELV-LRALGKVWHPECF---------KCSKCGKPL 37 (39)
T ss_pred CccccCCccc------CCcEE-EEeCCccccccCC---------CCcccCCcC
Confidence 4788888875 22122 2224889999887 588887654
No 230
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=35.17 E-value=5.2e+02 Score=26.63 Aligned_cols=113 Identities=14% Similarity=0.203 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHH---hcCCCCeEEEEEeCCCe-EEeecCcc-----------cCH--Hh------------HHHHHHH
Q 009657 277 HLRLLKQSMALVVF---SLRPNDRLAIVTYSSAA-ARVFPLKR-----------MTS--YG------------KRMALQV 327 (529)
Q Consensus 277 kL~l~K~Am~~vi~---~L~~~DrlsIVtFss~a-~~l~pl~~-----------mt~--~~------------k~~a~~~ 327 (529)
.|..+-+++..++. .|+...+++||+.+... +.+.|... ++. .+ .+.+++.
T Consensus 23 ~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~~~y~~f~~v~~~v~~~l~~l 102 (276)
T PF03850_consen 23 SLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDSNKYRQFRNVDETVLEELKKL 102 (276)
T ss_pred cHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCcccccccccchhHHHHHHHHHHHHHHHHH
Confidence 45555555555544 35789999999988654 44445443 000 01 1222222
Q ss_pred HhccccC----CCCChHHHHHHHHHHHHhccCC------CCCCEEEE-ccCCCCc--chhhh------cccccccEEEEe
Q 009657 328 IDRLFYM----GQADPIEGLKKGIKILEDRAHK------NPQSCILH-LSDTPTR--TYHAI------NLQVPFPVHRFH 388 (529)
Q Consensus 328 I~~L~a~----GgTni~~gL~~A~~~l~~~~~~------n~v~~IIL-LTDG~~~--~~~~~------~~~~~v~I~Tfg 388 (529)
++..... ..+.|..||-+|+=-+.+.... .-.+||++ ++=..+. .|..+ ..+.+|+|-++-
T Consensus 103 ~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi~~MN~iFaAqk~~v~IDv~~ 182 (276)
T PF03850_consen 103 MSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYIPLMNCIFAAQKQKVPIDVCK 182 (276)
T ss_pred HhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHHHHHHHHHHHhcCCceeEEEE
Confidence 2222211 2278999999999887765332 23458888 5544432 24332 237789999984
Q ss_pred e
Q 009657 389 V 389 (529)
Q Consensus 389 v 389 (529)
+
T Consensus 183 L 183 (276)
T PF03850_consen 183 L 183 (276)
T ss_pred e
Confidence 4
No 231
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=31.01 E-value=1.4e+02 Score=34.10 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=43.4
Q ss_pred cccCCCceeEEEE-ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEe
Q 009657 258 KLAHQPATDLVLV-ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARV 310 (529)
Q Consensus 258 ~~~~r~P~DLV~V-GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l 310 (529)
++..-+|+-+.+| .--.+..|..+|.++...+..|.|+--+++|+|.+..++.
T Consensus 117 kp~~~ppvf~fvvD~~~D~e~l~~LkdslivslsllppeaLvglItygt~i~v~ 170 (755)
T COG5047 117 KPVILPPVFFFVVDACCDEEELTALKDSLIVSLSLLPPEALVGLITYGTSIQVH 170 (755)
T ss_pred CCccCCceEEEEEEeecCHHHHHHHHHHHHHHHhcCCccceeeEEEecceeEEE
Confidence 4455677777777 3337899999999999999999888899999999887655
No 232
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=30.68 E-value=8.4 Score=41.67 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=21.7
Q ss_pred CCCcccHhHHHHHhhCCCCcccccccccccCCcCCC
Q 009657 85 CSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLY 120 (529)
Q Consensus 85 C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~~~~ 120 (529)
||-.||.+|. +|=+|.+-+..+||-.-
T Consensus 352 ~GkayHp~CF---------~Cv~C~r~ldgipFtvd 378 (468)
T KOG1701|consen 352 LGKAYHPGCF---------TCVVCARCLDGIPFTVD 378 (468)
T ss_pred cccccCCCce---------EEEEeccccCCcccccc
Confidence 5667777776 79999999999998643
No 233
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.31 E-value=23 Score=29.63 Aligned_cols=11 Identities=45% Similarity=1.310 Sum_probs=9.4
Q ss_pred ccccccccccc
Q 009657 104 TCPICRAHWTQ 114 (529)
Q Consensus 104 ~CPlCR~~~~~ 114 (529)
.||-||.-|-+
T Consensus 23 ~CPrCrGVWLD 33 (88)
T COG3809 23 YCPRCRGVWLD 33 (88)
T ss_pred eCCccccEeec
Confidence 69999999964
No 234
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=29.71 E-value=62 Score=33.88 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 009657 276 PHLRLLKQSMALVVFSLRPNDRLAIVTYSSA 306 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~ 306 (529)
+-|..+++++..+.+.|.++-|++||+|.|=
T Consensus 214 ~EL~~L~~~L~~~~~~L~~gGrl~VISfHSL 244 (305)
T TIGR00006 214 DELEELEEALQFAPNLLAPGGRLSIISFHSL 244 (305)
T ss_pred HhHHHHHHHHHHHHHHhcCCCEEEEEecCcH
Confidence 4588899999999999999999999999764
No 235
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.30 E-value=26 Score=26.37 Aligned_cols=38 Identities=21% Similarity=0.510 Sum_probs=27.0
Q ss_pred ccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 61 CAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 61 C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
|.-|-+.+. + ..+....-+..||..|. +|=.|++.+..
T Consensus 1 C~~C~~~I~------~-~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIY------G-TEIVIKAMGKFWHPECF---------KCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBES------S-SSEEEEETTEEEETTTS---------BETTTTCBTTT
T ss_pred CCCCCCCcc------C-cEEEEEeCCcEEEcccc---------ccCCCCCccCC
Confidence 777888885 2 33332236899999987 69999988654
No 236
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.15 E-value=21 Score=39.07 Aligned_cols=41 Identities=29% Similarity=0.602 Sum_probs=29.5
Q ss_pred cccccccccccccCCCCCCCcce---EeCCCCCcccHhHHHHHhhCCC
Q 009657 58 KNLCAICLEALSYSSGGSPGQAI---FTAQCSHAFHFACISSNVRHGS 102 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~---~~~~C~H~FH~~CI~~Wl~~~~ 102 (529)
-..|+.|...+. ..+|..- ....|.|.||..|+..|..++.
T Consensus 226 tk~CP~c~~~ie----k~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~~ 269 (444)
T KOG1815|consen 226 TKECPKCKVPIE----KDGGCNHMTCKSASCKHEFCWVCLASLSDHGS 269 (444)
T ss_pred CccCCCcccchh----ccCCccccccccCCcCCeeceeeecccccccc
Confidence 345999999987 2233322 2235999999999999988865
No 237
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.95 E-value=18 Score=27.55 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=5.7
Q ss_pred ccccccccccc
Q 009657 104 TCPICRAHWTQ 114 (529)
Q Consensus 104 ~CPlCR~~~~~ 114 (529)
.||+|.+++.+
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999988643
No 238
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=27.50 E-value=18 Score=37.16 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=19.7
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRA 110 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~ 110 (529)
+....|+||-..-..+.-.+.+. . .-.|.+|.-|-..|-..+. .||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~---~-G~R~L~Cs~C~t~W~~~R~-~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGER---E-GKRYLHCSLCGTEWRFVRI-KCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEEEEE----------EEEEEETTT--EEE--TT-S-TTT--
T ss_pred ccCCcCCCCCCcCceEEEecCCC---C-ccEEEEcCCCCCeeeecCC-CCcCCCC
Confidence 44579999987643221111110 0 1255667777788866533 8999964
No 239
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=26.15 E-value=11 Score=30.94 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=23.7
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccC
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQL 115 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~ 115 (529)
..|+.|..+|. +-. +|.++..|-....+. ..||-|..++..+
T Consensus 2 ~~CP~C~~~L~------------~~~-~~~~C~~C~~~~~~~--a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELE------------WQG-GHYHCEACQKDYKKE--AFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEE------------EET-TEEEETTT--EEEEE--EE-TTT-SB-EEE
T ss_pred CcCCCCCCccE------------EeC-CEEECccccccceec--ccCCCcccHHHHH
Confidence 47999999886 111 778888888775544 3699999886543
No 240
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=26.05 E-value=29 Score=37.68 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=24.9
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHh
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNV 98 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl 98 (529)
+-.|+||..-|+ ....++|+|..|..|...-+
T Consensus 4 elkc~vc~~f~~---------epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 4 ELKCPVCGSFYR---------EPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccCceehhhcc---------CceEeecccHHHHHHHHhhc
Confidence 458999998774 34567899999999987544
No 241
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.68 E-value=11 Score=38.54 Aligned_cols=52 Identities=23% Similarity=0.489 Sum_probs=38.0
Q ss_pred ccccccccccccccCCCCCCCcceEeCC--------CCCcccHhHHHHHhhCCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQ--------CSHAFHFACISSNVRHGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~--------C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 111 (529)
.+..|.||...+..+ ....+...+. |+|..+..|+..-+.+....||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n---~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSEN---DEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhcc---ccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346799999998621 1223334444 999999999999887555689999864
No 242
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=25.61 E-value=42 Score=32.86 Aligned_cols=46 Identities=22% Similarity=0.639 Sum_probs=28.4
Q ss_pred cccccccccc-cccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccc
Q 009657 58 KNLCAICLEA-LSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~-~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 111 (529)
...|-||-++ +-.+= .......-..|+-.||..|..+ ..||-|-+.
T Consensus 152 GfiCe~C~~~~~IfPF--~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~R~ 198 (202)
T PF13901_consen 152 GFICEICNSDDIIFPF--QIDTTVRCPKCKSVFHKSCFRK------KSCPKCARR 198 (202)
T ss_pred CCCCccCCCCCCCCCC--CCCCeeeCCcCccccchhhcCC------CCCCCcHhH
Confidence 3567777642 10010 0124455577999999999873 269999753
No 243
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=25.01 E-value=89 Score=31.27 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=42.6
Q ss_pred CCEEEEccCCCCcchhhh-cccccccEEEEeeeeeccCChhhHHHHHHHHHHhhhceeeeeEEE
Q 009657 359 QSCILHLSDTPTRTYHAI-NLQVPFPVHRFHVGFGFGSSNGFVMHEFEEFLATLLGGNVQEIQL 421 (529)
Q Consensus 359 v~~IILLTDG~~~~~~~~-~~~~~v~I~TfgvGfGfG~d~~~~~~~f~~~la~~l~~va~dv~l 421 (529)
-..|||+|=|++...... ..+.+..|+++ .|.||.-| ...-..++.+++.+++-..=|.+
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~~~~ev~al--sfdYGQrh-~~Ele~A~~iak~lgv~~~iid~ 63 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKKEGYEVHAL--TFDYGQRH-RKELEAAKELAKKLGVPHHIIDV 63 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHhcCCEEEEE--EeeCCCCc-HHHHHHHHHHHHHcCCCeEEech
Confidence 357999999998543221 22455778877 77999888 66667888999999986663333
No 244
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.77 E-value=15 Score=32.81 Aligned_cols=50 Identities=16% Similarity=0.407 Sum_probs=32.1
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 111 (529)
...|.+|...|.. -.+....-..|.|.+|..|-..--....-.|-+|...
T Consensus 54 ~~~C~~C~~~fg~----l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGF----LFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSC----TSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccc----cCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence 4589999998751 1233466678999999999875111223469999764
No 245
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=24.33 E-value=25 Score=37.86 Aligned_cols=51 Identities=25% Similarity=0.506 Sum_probs=0.0
Q ss_pred cccccccccccccCCC-----CCCCcceEeCCCCCcccHhHHHHHhh-----CCCCcccccccc
Q 009657 58 KNLCAICLEALSYSSG-----GSPGQAIFTAQCSHAFHFACISSNVR-----HGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~-----~~~~~~~~~~~C~H~FH~~CI~~Wl~-----~~~~~CPlCR~~ 111 (529)
...|++=|..+..+.. ..+.++-+-+.|||++-.+ .|-. ....+||+||..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 4668888887764311 1123455668899987743 5653 124589999976
No 246
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=24.00 E-value=7.7e+02 Score=25.00 Aligned_cols=98 Identities=18% Similarity=0.296 Sum_probs=57.5
Q ss_pred cCCCCeEEEEE-eCCCeEEeecCcc----------------------cCHHhHHHHHHHHhccc-cCCCCChHHHHHHHH
Q 009657 292 LRPNDRLAIVT-YSSAAARVFPLKR----------------------MTSYGKRMALQVIDRLF-YMGQADPIEGLKKGI 347 (529)
Q Consensus 292 L~~~DrlsIVt-Fss~a~~l~pl~~----------------------mt~~~k~~a~~~I~~L~-a~GgTni~~gL~~A~ 347 (529)
+..++|++||+ ||...+.+.|-.. +++.....+.+.++.-. ...-+.+++||..|+
T Consensus 60 f~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~~k~sqr~~v~gams~gl 139 (296)
T COG5242 60 FSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMYRRFRNVDETDITEIYRLIEHPHKNSQRYDVGGAMSLGL 139 (296)
T ss_pred hccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhhhhhcccchHHHHHHHHHHhCcccccceeehhhhhhhhH
Confidence 35788999986 4555666665321 11112223333333322 234588999999999
Q ss_pred HHHHhccCCCCC-CEEEEccC-CCCcc--hhhh------cccccccEEEEee
Q 009657 348 KILEDRAHKNPQ-SCILHLSD-TPTRT--YHAI------NLQVPFPVHRFHV 389 (529)
Q Consensus 348 ~~l~~~~~~n~v-~~IILLTD-G~~~~--~~~~------~~~~~v~I~Tfgv 389 (529)
.....+..++.. ++|+++|= |.+.. |... ..+.++||..|-|
T Consensus 140 ay~n~~~~e~slkSriliftlsG~d~~~qYip~mnCiF~Aqk~~ipI~v~~i 191 (296)
T COG5242 140 AYCNHRDEETSLKSRILIFTLSGRDRKDQYIPYMNCIFAAQKFGIPISVFSI 191 (296)
T ss_pred HHHhhhcccccccceEEEEEecCchhhhhhchhhhheeehhhcCCceEEEEe
Confidence 998887766653 57777776 64432 2221 1266788887744
No 247
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.99 E-value=36 Score=29.26 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=10.9
Q ss_pred cccHhHHHHHhh
Q 009657 88 AFHFACISSNVR 99 (529)
Q Consensus 88 ~FH~~CI~~Wl~ 99 (529)
-||+.|++.|++
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999997
No 248
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.67 E-value=42 Score=22.10 Aligned_cols=9 Identities=22% Similarity=0.619 Sum_probs=5.3
Q ss_pred ccccccccc
Q 009657 60 LCAICLEAL 68 (529)
Q Consensus 60 ~C~ICl~~~ 68 (529)
.|+-|...+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 466666655
No 249
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=23.54 E-value=19 Score=27.62 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=18.2
Q ss_pred ccccc--cccccccCCCCCCCcceEeCC-CCCcccHhHHHHH
Q 009657 59 NLCAI--CLEALSYSSGGSPGQAIFTAQ-CSHAFHFACISSN 97 (529)
Q Consensus 59 ~~C~I--Cl~~~~~~~~~~~~~~~~~~~-C~H~FH~~CI~~W 97 (529)
.-|+- |-..+... .+.....+.-+ |++.|++.|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~--~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKD--DGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS---SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEec--CCCCCCeeECCCCCCcCccccCccc
Confidence 36766 77776511 11112124545 9999998888887
No 250
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=23.32 E-value=75 Score=33.36 Aligned_cols=30 Identities=23% Similarity=0.613 Sum_probs=21.5
Q ss_pred CCCCCcccHhHHHHHhh----CC----CCccccccccc
Q 009657 83 AQCSHAFHFACISSNVR----HG----SVTCPICRAHW 112 (529)
Q Consensus 83 ~~C~H~FH~~CI~~Wl~----~~----~~~CPlCR~~~ 112 (529)
.+|||+--..-..=|.. ++ ...||.|-..+
T Consensus 376 ~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 376 NPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred CCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 56999977777777876 22 25799997653
No 251
>TIGR03876 cas_csaX CRISPR-associated protein, CsaX family. This family comprises a minor CRISPR-associated protein family. It occurs only in the context of the (strictly archaeal) Apern subtype of CRISPR/Cas system, and is further restricted to the Sulfolobales, including Metallosphaera sedula DSM 5348 and multiple species of the genus Sulfolobus.
Probab=23.09 E-value=1.5e+02 Score=29.49 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=44.0
Q ss_pred CCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCC
Q 009657 293 RPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDT 368 (529)
Q Consensus 293 ~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG 368 (529)
+.+|+++|=.|--+..+++.+.+ .+..+-++=-....=+|..|++++.....--..-+|.++||.
T Consensus 138 s~gd~vGvnvFt~t~~~lys~~~-----------n~~g~ipG~kPeTAF~lwlA~~vvss~~~~~S~~riY~mSDA 202 (281)
T TIGR03876 138 SNGDRVGVNVFTVTVDRLYSVLP-----------NLSGLIPGFKPETAFLLWLAYQVVSSKAEIRSGIRIYAMSDA 202 (281)
T ss_pred cCCCeeEEEEEEeehhhhhhhcc-----------cccccCCCcCcchHHHHHHHHHHHhccCCcceeEEEEEeccc
Confidence 57999999999766666654332 234555554555667889999998762222245589999994
No 252
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=22.88 E-value=1e+02 Score=32.22 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEEeCCCe
Q 009657 276 PHLRLLKQSMALVVFSLRPNDRLAIVTYSSAA 307 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a 307 (529)
+-|..++..|..+.+.|.++-|++||+|.|--
T Consensus 210 ~El~~L~~~L~~~~~~L~~gGrl~visfHSlE 241 (296)
T PRK00050 210 DELEELERALEAALDLLKPGGRLAVISFHSLE 241 (296)
T ss_pred hhHHHHHHHHHHHHHHhcCCCEEEEEecCcHH
Confidence 35788889999999999999999999997643
No 253
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.80 E-value=49 Score=33.24 Aligned_cols=14 Identities=29% Similarity=0.840 Sum_probs=10.7
Q ss_pred CCCCcccccccccc
Q 009657 100 HGSVTCPICRAHWT 113 (529)
Q Consensus 100 ~~~~~CPlCR~~~~ 113 (529)
++..+||+|+++=+
T Consensus 206 RNAPiCPlCK~KsR 219 (230)
T PF10146_consen 206 RNAPICPLCKAKSR 219 (230)
T ss_pred cCCCCCcccccccc
Confidence 44679999999843
No 254
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.36 E-value=38 Score=23.95 Aligned_cols=31 Identities=19% Similarity=0.549 Sum_probs=16.7
Q ss_pred cccccccccccCCC--CCCCcceEeCCCCCccc
Q 009657 60 LCAICLEALSYSSG--GSPGQAIFTAQCSHAFH 90 (529)
Q Consensus 60 ~C~ICl~~~~~~~~--~~~~~~~~~~~C~H~FH 90 (529)
.|+-|...|+.+.. ...+..+.=..|+|.|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57778777764311 11233445555666664
No 255
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=21.48 E-value=74 Score=27.51 Aligned_cols=32 Identities=38% Similarity=0.634 Sum_probs=22.7
Q ss_pred ccccccccccccccCCCCCCCcceEeC--CCCCcccHhHHHH
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTA--QCSHAFHFACISS 96 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~--~C~H~FH~~CI~~ 96 (529)
....|.||.... |..+.=. .|...||..|...
T Consensus 54 ~~~~C~iC~~~~--------G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSG--------GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCC--------ceeEEcCCCCCCcCCCHHHHHH
Confidence 356899999862 3333333 3888999999865
No 256
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.16 E-value=29 Score=25.26 Aligned_cols=26 Identities=31% Similarity=0.704 Sum_probs=15.3
Q ss_pred CCCCCcccHhHHHHHhhCCCCccccccc
Q 009657 83 AQCSHAFHFACISSNVRHGSVTCPICRA 110 (529)
Q Consensus 83 ~~C~H~FH~~CI~~Wl~~~~~~CPlCR~ 110 (529)
..|||.|....--. ......||.|..
T Consensus 9 ~~Cg~~fe~~~~~~--~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSIS--EDDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcC--CCCCCcCCCCCC
Confidence 35888776443211 122458999998
No 257
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=20.44 E-value=38 Score=29.16 Aligned_cols=29 Identities=34% Similarity=0.902 Sum_probs=18.5
Q ss_pred CCCCcccHhHHHHHhhCCCCcccccccccccCCc
Q 009657 84 QCSHAFHFACISSNVRHGSVTCPICRAHWTQLPR 117 (529)
Q Consensus 84 ~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~ 117 (529)
.||-.|-..=| +.-+ .||.|+..|-+-|.
T Consensus 63 kCGfef~~~~i----k~pS-RCP~CKSE~Ie~pr 91 (97)
T COG3357 63 KCGFEFRDDKI----KKPS-RCPKCKSEWIEEPR 91 (97)
T ss_pred ccCcccccccc----CCcc-cCCcchhhcccCCc
Confidence 37766654222 2223 79999999987664
Done!