Query 009657
Match_columns 529
No_of_seqs 527 out of 3417
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:07:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 99.9 2.6E-25 9E-30 239.5 23.7 202 261-465 74-347 (464)
2 2xgg_A Microneme protein 2; A/ 99.7 1.2E-16 4.1E-21 149.4 13.7 129 262-390 15-160 (178)
3 4hqo_A Sporozoite surface prot 99.7 2.8E-16 9.5E-21 156.8 13.9 128 262-389 16-162 (266)
4 1ijb_A VON willebrand factor; 99.7 9.1E-16 3.1E-20 146.4 14.7 126 262-389 11-154 (202)
5 4hqf_A Thrombospondin-related 99.6 7.2E-16 2.5E-20 154.5 13.5 129 262-390 19-166 (281)
6 1q0p_A Complement factor B; VO 99.6 2E-15 6.9E-20 144.4 13.9 111 261-371 12-140 (223)
7 1mjn_A Integrin alpha-L; rossm 99.6 2.1E-15 7.2E-20 141.2 11.8 125 264-390 2-135 (179)
8 3zqk_A VON willebrand factor; 99.6 1.9E-15 6.6E-20 143.8 11.6 125 262-389 19-155 (199)
9 2x31_A Magnesium-chelatase 60 99.6 1.2E-15 4.2E-20 143.0 9.8 108 261-372 2-115 (189)
10 3n2n_F Anthrax toxin receptor 99.6 5.2E-15 1.8E-19 137.7 13.6 124 262-390 5-146 (185)
11 1mf7_A Integrin alpha M; cell 99.6 2.1E-15 7E-20 142.2 10.5 127 262-390 3-145 (194)
12 1atz_A VON willebrand factor; 99.6 6.7E-15 2.3E-19 138.3 13.8 125 263-389 4-143 (189)
13 2odp_A Complement C2; C3/C5 co 99.6 3.4E-15 1.2E-19 161.0 13.0 132 259-390 4-171 (509)
14 3ibs_A Conserved hypothetical 99.6 6.1E-15 2.1E-19 140.9 13.3 123 261-390 8-148 (218)
15 1shu_X Anthrax toxin receptor 99.6 1.3E-14 4.5E-19 134.6 14.9 127 262-390 4-143 (182)
16 3hrz_D Complement factor B; se 99.6 1.3E-14 4.4E-19 163.2 15.0 113 259-371 238-368 (741)
17 1v7p_C Integrin alpha-2; snake 99.6 2.3E-14 7.9E-19 136.0 12.9 123 263-389 5-145 (200)
18 4b4t_W RPN10, 26S proteasome r 99.5 3.8E-14 1.3E-18 142.1 13.7 135 271-411 14-164 (268)
19 2b2x_A Integrin alpha-1; compu 99.5 3.8E-14 1.3E-18 136.9 12.7 125 262-390 20-162 (223)
20 1pt6_A Integrin alpha-1; cell 99.5 4.6E-14 1.6E-18 135.2 12.4 125 262-390 5-147 (213)
21 1n3y_A Integrin alpha-X; alpha 99.5 1.6E-14 5.5E-19 136.0 7.6 128 262-391 7-150 (198)
22 1rrk_A Complement factor B; BB 99.4 2.5E-13 8.6E-18 145.7 11.6 109 264-372 1-127 (497)
23 2x5n_A SPRPN10, 26S proteasome 99.4 3.7E-12 1.3E-16 121.7 13.7 137 266-409 4-160 (192)
24 2ep4_A Ring finger protein 24; 99.3 1.4E-12 4.9E-17 104.9 5.7 55 57-118 14-68 (74)
25 2ww8_A RRGA, cell WALL surface 99.3 4.9E-12 1.7E-16 145.5 12.5 122 249-371 202-391 (893)
26 2kiz_A E3 ubiquitin-protein li 99.3 1.6E-12 5.5E-17 103.2 5.8 52 56-114 12-63 (69)
27 2ect_A Ring finger protein 126 99.3 2.5E-12 8.6E-17 104.5 5.7 52 57-115 14-65 (78)
28 1x4j_A Ring finger protein 38; 99.3 1.6E-12 5.5E-17 105.0 4.4 51 56-113 21-71 (75)
29 2ecl_A Ring-box protein 2; RNF 99.3 1.9E-12 6.3E-17 106.8 4.6 57 57-114 14-76 (81)
30 3dpl_R Ring-box protein 1; ubi 99.3 1.9E-12 6.6E-17 112.4 4.8 56 57-113 36-100 (106)
31 1iym_A EL5; ring-H2 finger, ub 99.3 2.6E-12 8.8E-17 97.3 3.7 49 57-112 4-53 (55)
32 2l0b_A E3 ubiquitin-protein li 99.2 3.1E-12 1.1E-16 107.6 4.4 51 56-113 38-88 (91)
33 1v87_A Deltex protein 2; ring- 99.2 5E-12 1.7E-16 110.1 5.6 59 57-115 24-95 (114)
34 3k6s_A Integrin alpha-X; cell 99.2 6.6E-12 2.3E-16 147.7 6.8 130 262-393 128-273 (1095)
35 4a0k_B E3 ubiquitin-protein li 99.2 1.5E-12 5E-17 115.0 0.2 56 57-113 47-111 (117)
36 2ecm_A Ring finger and CHY zin 99.2 1.1E-11 3.8E-16 93.6 4.1 50 57-112 4-53 (55)
37 2ea6_A Ring finger protein 4; 99.1 2.6E-11 8.9E-16 95.6 4.1 54 57-113 14-67 (69)
38 2djb_A Polycomb group ring fin 99.1 7.4E-11 2.5E-15 94.5 5.8 50 56-114 13-62 (72)
39 1chc_A Equine herpes virus-1 r 99.1 3.1E-11 1.1E-15 95.3 3.3 49 57-114 4-52 (68)
40 3ng2_A RNF4, snurf, ring finge 99.1 4E-11 1.4E-15 95.2 3.2 54 57-113 9-62 (71)
41 2d8t_A Dactylidin, ring finger 99.1 5.2E-11 1.8E-15 95.1 3.7 51 57-117 14-64 (71)
42 2d8s_A Cellular modulator of i 99.0 1.3E-10 4.5E-15 95.8 5.1 51 57-114 14-70 (80)
43 2xeu_A Ring finger protein 4; 99.0 5.4E-11 1.8E-15 92.3 2.6 54 58-114 3-56 (64)
44 2ct0_A Non-SMC element 1 homol 99.0 2E-10 6.8E-15 93.3 5.6 51 56-114 13-64 (74)
45 2ecy_A TNF receptor-associated 99.0 2.7E-10 9.1E-15 89.6 4.8 49 56-113 13-61 (66)
46 2ysl_A Tripartite motif-contai 99.0 4.1E-10 1.4E-14 89.9 5.9 49 56-113 18-68 (73)
47 2ecn_A Ring finger protein 141 99.0 1.3E-10 4.4E-15 92.3 2.7 46 57-113 14-59 (70)
48 1jey_B KU80; double-strand DNA 99.0 2E-09 7E-14 118.4 13.1 124 265-392 8-170 (565)
49 2ct2_A Tripartite motif protei 99.0 4.2E-10 1.5E-14 92.9 5.4 52 57-113 14-67 (88)
50 3lrq_A E3 ubiquitin-protein li 99.0 2.3E-10 7.9E-15 97.8 3.6 49 57-113 21-69 (100)
51 4ayc_A E3 ubiquitin-protein li 99.0 2.1E-10 7.3E-15 103.6 3.5 47 58-114 53-99 (138)
52 2csy_A Zinc finger protein 183 98.9 6.5E-10 2.2E-14 90.9 5.1 47 57-113 14-60 (81)
53 2yur_A Retinoblastoma-binding 98.9 7.6E-10 2.6E-14 89.2 5.4 48 56-112 13-62 (74)
54 1g25_A CDK-activating kinase a 98.9 4.7E-10 1.6E-14 87.9 4.0 51 58-113 3-54 (65)
55 1t1h_A Gspef-atpub14, armadill 98.9 6.1E-10 2.1E-14 90.2 4.5 48 57-113 7-54 (78)
56 2ckl_B Ubiquitin ligase protei 98.9 5.8E-10 2E-14 103.4 4.3 49 57-113 53-101 (165)
57 2y43_A E3 ubiquitin-protein li 98.9 6.4E-10 2.2E-14 94.4 4.1 49 57-114 21-69 (99)
58 3fl2_A E3 ubiquitin-protein li 98.9 1E-09 3.5E-14 97.0 5.2 48 58-114 52-99 (124)
59 2ckl_A Polycomb group ring fin 98.9 1.1E-09 3.9E-14 94.4 4.5 49 57-114 14-62 (108)
60 2ysj_A Tripartite motif-contai 98.9 2.2E-09 7.5E-14 83.4 5.3 44 56-108 18-63 (63)
61 2ecw_A Tripartite motif-contai 98.8 2.3E-09 8E-14 87.5 5.4 48 57-113 18-70 (85)
62 2ecj_A Tripartite motif-contai 98.8 2.6E-09 8.8E-14 81.3 4.6 43 57-108 14-58 (58)
63 2egp_A Tripartite motif-contai 98.8 9.6E-10 3.3E-14 89.0 2.2 48 57-113 11-64 (79)
64 1e4u_A Transcriptional repress 98.8 5.1E-09 1.8E-13 85.8 5.6 55 57-116 10-64 (78)
65 2ecv_A Tripartite motif-contai 98.8 4.9E-09 1.7E-13 85.5 5.3 48 57-113 18-70 (85)
66 4ap4_A E3 ubiquitin ligase RNF 98.8 2.2E-09 7.4E-14 94.8 3.3 54 57-113 6-59 (133)
67 1z6u_A NP95-like ring finger p 98.8 3.8E-09 1.3E-13 97.0 4.9 48 58-114 78-125 (150)
68 1yvr_A RO autoantigen, 60-kDa 98.8 8.5E-09 2.9E-13 112.7 8.0 101 262-372 366-474 (538)
69 3ztg_A E3 ubiquitin-protein li 98.8 4.5E-09 1.5E-13 87.8 4.3 48 56-112 11-60 (92)
70 3l11_A E3 ubiquitin-protein li 98.8 1.9E-09 6.3E-14 94.0 2.0 48 58-114 15-62 (115)
71 3rag_A Uncharacterized protein 98.7 1E-08 3.4E-13 101.0 6.6 86 262-353 132-228 (242)
72 1jm7_A BRCA1, breast cancer ty 98.7 6.2E-09 2.1E-13 89.8 3.3 47 58-113 21-69 (112)
73 4ap4_A E3 ubiquitin ligase RNF 98.7 3.2E-09 1.1E-13 93.7 1.4 55 56-113 70-124 (133)
74 3knv_A TNF receptor-associated 98.7 7.6E-09 2.6E-13 94.0 3.7 48 56-112 29-76 (141)
75 3hct_A TNF receptor-associated 98.7 8.3E-09 2.9E-13 90.5 3.4 50 56-114 16-65 (118)
76 1jey_A KU70; double-strand DNA 98.7 6.2E-08 2.1E-12 107.5 11.0 126 267-392 38-208 (609)
77 1rmd_A RAG1; V(D)J recombinati 98.7 1.3E-08 4.4E-13 88.8 4.2 48 58-114 23-70 (116)
78 2y1n_A E3 ubiquitin-protein li 98.6 2.3E-08 7.8E-13 104.7 3.8 49 57-114 331-379 (389)
79 1wgm_A Ubiquitin conjugation f 98.6 8E-08 2.7E-12 82.0 6.4 48 56-113 20-68 (98)
80 1jm7_B BARD1, BRCA1-associated 98.6 1.9E-08 6.6E-13 88.0 2.4 46 57-113 21-66 (117)
81 2vje_A E3 ubiquitin-protein li 98.5 2.8E-08 9.6E-13 78.1 2.6 49 57-114 7-57 (64)
82 2kr4_A Ubiquitin conjugation f 98.5 6.4E-08 2.2E-12 80.3 4.7 48 56-113 12-59 (85)
83 2vje_B MDM4 protein; proto-onc 98.5 4.5E-08 1.5E-12 76.7 2.7 50 57-114 6-56 (63)
84 2c2l_A CHIP, carboxy terminus 98.5 6.8E-08 2.3E-12 95.6 4.4 48 57-113 207-254 (281)
85 2kre_A Ubiquitin conjugation f 98.5 1.5E-07 5.3E-12 80.5 5.7 48 56-113 27-74 (100)
86 4ic3_A E3 ubiquitin-protein li 98.4 6.7E-08 2.3E-12 77.9 2.1 44 57-114 23-67 (74)
87 1bor_A Transcription factor PM 98.4 7.4E-08 2.5E-12 73.4 1.7 43 58-113 6-48 (56)
88 2yu4_A E3 SUMO-protein ligase 98.4 1.7E-07 5.9E-12 79.1 3.3 47 57-111 6-59 (94)
89 3hcs_A TNF receptor-associated 98.3 2.6E-07 9E-12 85.8 3.4 50 56-114 16-65 (170)
90 2f42_A STIP1 homology and U-bo 98.3 3.3E-07 1.1E-11 86.5 3.9 49 56-113 104-152 (179)
91 2ecg_A Baculoviral IAP repeat- 98.3 1.9E-07 6.5E-12 75.3 1.4 44 57-114 24-68 (75)
92 3k1l_B Fancl; UBC, ring, RWD, 98.2 2.4E-07 8.3E-12 94.8 1.1 53 57-113 307-372 (381)
93 3htk_C E3 SUMO-protein ligase 98.1 8E-07 2.8E-11 88.2 3.4 49 57-113 180-231 (267)
94 1wim_A KIAA0161 protein; ring 98.1 1E-06 3.4E-11 74.0 2.6 48 58-111 5-61 (94)
95 2ea5_A Cell growth regulator w 98.1 2.4E-06 8.3E-11 67.8 4.4 46 56-115 13-59 (68)
96 1vyx_A ORF K3, K3RING; zinc-bi 98.1 2.1E-06 7.1E-11 66.7 3.3 48 57-113 5-58 (60)
97 2yho_A E3 ubiquitin-protein li 98.0 1.3E-06 4.4E-11 71.4 1.6 44 57-114 17-61 (79)
98 2nvo_A RO sixty-related protei 98.0 8E-06 2.7E-10 89.2 8.2 117 262-390 360-498 (535)
99 2bay_A PRE-mRNA splicing facto 97.9 4.1E-06 1.4E-10 65.2 2.4 47 59-114 4-50 (61)
100 3t6p_A Baculoviral IAP repeat- 97.9 2.9E-06 9.9E-11 87.9 1.8 44 57-114 294-338 (345)
101 2iue_A Pactolus I-domain; memb 97.7 0.00016 5.5E-09 69.9 11.1 103 263-370 2-116 (212)
102 3nw0_A Non-structural maintena 97.7 2.4E-05 8E-10 77.0 5.1 50 57-114 179-229 (238)
103 3vk6_A E3 ubiquitin-protein li 97.7 2E-05 6.8E-10 66.9 3.5 49 60-116 3-51 (101)
104 2nut_A Protein transport prote 97.4 0.012 4E-07 67.0 22.3 205 263-468 132-498 (769)
105 1pcx_A Protein transport prote 96.5 0.18 6E-06 57.7 21.6 197 266-468 189-510 (810)
106 3fcs_B Integrin beta-3; beta p 96.3 0.0054 1.8E-07 68.8 7.7 114 251-369 98-253 (690)
107 3vi3_B Integrin beta-1; beta p 96.3 0.013 4.5E-07 62.3 10.1 113 252-369 110-261 (454)
108 3k6s_B Integrin beta-2; cell r 96.3 0.0054 1.9E-07 68.7 7.2 113 252-369 92-244 (687)
109 3v4v_B Integrin beta-7; cell a 96.0 0.02 6.8E-07 61.6 9.4 114 251-369 119-272 (503)
110 3t3p_B Integrin beta-3; integr 95.8 0.017 5.7E-07 61.9 8.2 114 251-369 98-253 (472)
111 1m2o_A SEC23, protein transpor 95.8 0.066 2.2E-06 60.9 13.5 107 263-371 121-293 (768)
112 1m2v_B SEC24, protein transpor 95.4 0.56 1.9E-05 54.3 19.1 198 265-468 304-626 (926)
113 3eh1_A Protein transport prote 94.6 3.6 0.00012 46.5 22.8 200 263-468 160-476 (751)
114 3efo_B SEC24 related gene fami 94.1 4.3 0.00015 46.0 22.0 203 262-468 176-498 (770)
115 2lri_C Autoimmune regulator; Z 93.5 0.064 2.2E-06 42.1 4.0 48 57-113 11-61 (66)
116 3eh2_A Protein transport prote 93.3 7.7 0.00026 43.9 22.0 202 263-468 173-494 (766)
117 1weo_A Cellulose synthase, cat 86.5 1.2 4.2E-05 36.8 5.7 54 57-114 15-70 (93)
118 2jun_A Midline-1; B-BOX, TRIM, 84.9 0.42 1.4E-05 39.7 2.3 33 58-97 3-36 (101)
119 2ko5_A Ring finger protein Z; 83.2 1.5 5E-05 36.7 4.8 48 57-118 27-74 (99)
120 3rag_A Uncharacterized protein 81.9 0.61 2.1E-05 45.7 2.4 33 357-389 8-46 (242)
121 3o36_A Transcription intermedi 81.8 0.41 1.4E-05 44.5 1.1 47 57-112 3-52 (184)
122 2l5u_A Chromodomain-helicase-D 81.7 0.78 2.7E-05 35.1 2.5 46 57-111 10-58 (61)
123 3u5n_A E3 ubiquitin-protein li 80.9 0.41 1.4E-05 45.5 0.8 46 57-111 6-54 (207)
124 2k16_A Transcription initiatio 80.4 0.98 3.4E-05 35.7 2.8 51 57-113 17-70 (75)
125 3v43_A Histone acetyltransfera 79.7 1.7 5.8E-05 37.2 4.2 53 57-109 4-62 (112)
126 1wev_A Riken cDNA 1110020M19; 79.1 0.49 1.7E-05 39.0 0.6 54 57-114 15-75 (88)
127 2kwj_A Zinc finger protein DPF 78.6 0.83 2.8E-05 39.3 1.9 51 59-109 2-59 (114)
128 1we9_A PHD finger family prote 77.5 0.75 2.6E-05 35.2 1.2 50 57-111 5-58 (64)
129 1f62_A Transcription factor WS 77.3 1.3 4.5E-05 32.2 2.4 45 60-110 2-49 (51)
130 2yql_A PHD finger protein 21A; 77.2 0.46 1.6E-05 35.6 -0.1 46 56-110 7-55 (56)
131 2lv9_A Histone-lysine N-methyl 77.2 1.1 3.8E-05 37.5 2.3 46 58-110 28-75 (98)
132 2lbm_A Transcriptional regulat 77.1 2 6.9E-05 38.6 4.1 46 56-110 61-116 (142)
133 1mm2_A MI2-beta; PHD, zinc fin 76.6 0.71 2.4E-05 35.3 0.8 46 57-111 8-56 (61)
134 1weu_A Inhibitor of growth fam 76.3 4.4 0.00015 33.6 5.6 45 57-111 35-85 (91)
135 2ro1_A Transcription intermedi 75.6 0.76 2.6E-05 43.1 0.9 45 58-111 2-49 (189)
136 1wem_A Death associated transc 75.4 1.4 4.9E-05 34.9 2.4 47 59-112 17-71 (76)
137 2yt5_A Metal-response element- 74.4 0.58 2E-05 36.1 -0.2 51 57-111 5-61 (66)
138 1wew_A DNA-binding family prot 74.1 1.7 5.7E-05 34.8 2.4 48 57-111 15-72 (78)
139 2xb1_A Pygopus homolog 2, B-ce 73.8 0.6 2E-05 39.8 -0.3 50 58-112 3-62 (105)
140 1xwh_A Autoimmune regulator; P 72.2 0.75 2.6E-05 35.7 -0.1 46 57-111 7-55 (66)
141 2puy_A PHD finger protein 21A; 70.2 0.88 3E-05 34.5 -0.1 46 57-111 4-52 (60)
142 1wen_A Inhibitor of growth fam 69.7 3.1 0.00011 32.8 3.1 45 57-111 15-65 (71)
143 2gmg_A Hypothetical protein PF 69.2 1 3.6E-05 38.4 0.2 29 83-117 71-99 (105)
144 1fp0_A KAP-1 corepressor; PHD 68.2 2.1 7.1E-05 35.4 1.8 47 56-111 23-72 (88)
145 3ql9_A Transcriptional regulat 68.1 5.2 0.00018 35.3 4.4 46 56-110 55-110 (129)
146 2ysm_A Myeloid/lymphoid or mix 67.7 2.2 7.4E-05 36.2 1.9 48 56-109 5-55 (111)
147 2l43_A N-teminal domain from h 66.7 2.3 7.9E-05 34.9 1.8 52 56-111 23-75 (88)
148 3lqh_A Histone-lysine N-methyl 66.0 1.5 5.2E-05 41.0 0.6 52 58-111 2-63 (183)
149 2cs3_A Protein C14ORF4, MY039 65.8 4.7 0.00016 32.7 3.3 36 58-99 15-51 (93)
150 2e6r_A Jumonji/ARID domain-con 62.4 1.6 5.6E-05 36.1 0.1 49 57-111 15-66 (92)
151 3v43_A Histone acetyltransfera 59.7 3.1 0.00011 35.5 1.3 48 59-111 62-112 (112)
152 2ku3_A Bromodomain-containing 56.6 3.9 0.00013 32.2 1.4 51 57-111 15-66 (71)
153 2ri7_A Nucleosome-remodeling f 55.9 3.6 0.00012 37.6 1.2 48 58-111 8-59 (174)
154 2kgg_A Histone demethylase jar 53.4 4.3 0.00015 29.8 1.0 45 60-109 4-52 (52)
155 3shb_A E3 ubiquitin-protein li 52.9 3 0.0001 33.5 0.1 45 60-110 28-76 (77)
156 1x64_A Alpha-actinin-2 associa 51.6 23 0.0008 28.1 5.4 39 58-114 25-63 (89)
157 3asl_A E3 ubiquitin-protein li 51.2 4.2 0.00014 31.9 0.7 46 60-111 20-69 (70)
158 2vnf_A ING 4, P29ING4, inhibit 51.0 4.5 0.00015 30.7 0.8 43 59-111 11-59 (60)
159 3ask_A E3 ubiquitin-protein li 51.0 4.6 0.00016 39.0 1.1 46 60-111 176-225 (226)
160 3c6w_A P28ING5, inhibitor of g 50.6 4.7 0.00016 30.5 0.9 43 59-111 10-58 (59)
161 2e6s_A E3 ubiquitin-protein li 49.9 4.4 0.00015 32.4 0.7 45 60-110 28-76 (77)
162 2dar_A PDZ and LIM domain prot 48.2 19 0.00066 28.7 4.3 40 57-114 24-63 (90)
163 3i2d_A E3 SUMO-protein ligase 47.0 13 0.00046 38.3 3.9 45 59-112 250-298 (371)
164 2ct7_A Ring finger protein 31; 45.1 4.7 0.00016 32.7 0.1 45 61-109 28-74 (86)
165 1wee_A PHD finger family prote 42.6 7.4 0.00025 30.4 0.9 47 58-111 16-66 (72)
166 2g6q_A Inhibitor of growth pro 42.5 7.4 0.00025 29.7 0.9 46 58-111 11-60 (62)
167 2vpb_A Hpygo1, pygopus homolog 41.8 17 0.00059 27.9 2.9 48 57-109 7-64 (65)
168 2ysm_A Myeloid/lymphoid or mix 40.0 6.3 0.00022 33.3 0.1 46 60-111 56-104 (111)
169 3o70_A PHD finger protein 13; 39.6 9 0.00031 29.8 0.9 46 58-110 19-66 (68)
170 2rsd_A E3 SUMO-protein ligase 39.5 5.3 0.00018 30.9 -0.4 46 59-111 11-65 (68)
171 4fo9_A E3 SUMO-protein ligase 39.3 25 0.00086 36.1 4.5 45 59-112 216-264 (360)
172 3fyb_A Protein of unknown func 38.6 11 0.00036 31.8 1.3 12 88-99 41-52 (104)
173 4gne_A Histone-lysine N-methyl 38.6 17 0.00059 30.9 2.6 45 56-111 13-62 (107)
174 2o35_A Hypothetical protein DU 38.5 11 0.00037 31.8 1.3 12 88-99 42-53 (105)
175 1wep_A PHF8; structural genomi 38.3 21 0.00071 28.3 3.0 47 60-112 14-64 (79)
176 3m62_A Ubiquitin conjugation f 37.8 23 0.0008 40.9 4.3 48 56-113 889-937 (968)
177 2kwj_A Zinc finger protein DPF 37.4 4.4 0.00015 34.7 -1.3 49 59-113 59-110 (114)
178 1wd2_A Ariadne-1 protein homol 36.9 5.9 0.0002 30.1 -0.5 41 58-102 6-49 (60)
179 3kv5_D JMJC domain-containing 35.1 19 0.00063 38.6 2.8 47 60-111 38-88 (488)
180 2jmi_A Protein YNG1, ING1 homo 35.1 8.4 0.00029 31.8 0.1 43 58-110 26-75 (90)
181 2cu8_A Cysteine-rich protein 2 34.0 25 0.00086 26.9 2.8 40 58-114 9-48 (76)
182 2co8_A NEDD9 interacting prote 32.7 25 0.00085 27.6 2.6 40 58-114 15-54 (82)
183 2dj7_A Actin-binding LIM prote 32.4 25 0.00084 27.6 2.5 39 58-113 15-53 (80)
184 1iml_A CRIP, cysteine rich int 30.3 16 0.00056 28.0 1.1 37 60-113 2-38 (76)
185 2jmo_A Parkin; IBR, E3 ligase, 29.2 10 0.00034 30.4 -0.4 14 84-97 55-68 (80)
186 1x4l_A Skeletal muscle LIM-pro 28.2 31 0.001 26.1 2.3 43 58-114 5-47 (72)
187 1wyh_A SLIM 2, skeletal muscle 27.8 29 0.001 26.1 2.1 41 58-114 5-45 (72)
188 2zet_C Melanophilin; complex, 27.0 31 0.0011 31.1 2.5 50 57-111 67-117 (153)
189 2lcq_A Putative toxin VAPC6; P 26.4 18 0.00062 32.5 0.8 29 83-118 136-164 (165)
190 1x4k_A Skeletal muscle LIM-pro 24.9 31 0.0011 25.9 1.8 40 59-114 6-45 (72)
191 1a7i_A QCRP2 (LIM1); LIM domai 24.1 24 0.00082 27.4 1.0 40 58-114 7-46 (81)
192 3o7a_A PHD finger protein 13 v 23.6 19 0.00066 26.1 0.3 42 63-110 8-51 (52)
193 2d8x_A Protein pinch; LIM doma 23.5 42 0.0015 25.1 2.3 39 58-114 5-43 (70)
194 1x63_A Skeletal muscle LIM-pro 23.4 39 0.0013 26.1 2.2 41 58-114 15-55 (82)
195 1x61_A Thyroid receptor intera 23.1 46 0.0016 25.0 2.5 40 58-113 5-44 (72)
196 2d8y_A Eplin protein; LIM doma 23.0 74 0.0025 25.2 3.8 40 58-114 15-54 (91)
197 1g47_A Pinch protein; LIM doma 22.9 42 0.0014 25.5 2.2 41 58-114 11-51 (77)
198 1wil_A KIAA1045 protein; ring 22.8 53 0.0018 26.8 2.8 34 57-97 14-47 (89)
199 1zbd_B Rabphilin-3A; G protein 22.2 41 0.0014 29.6 2.2 51 57-111 54-107 (134)
200 3f6q_B LIM and senescent cell 22.2 39 0.0013 25.1 1.9 42 57-114 10-51 (72)
201 3kqi_A GRC5, PHD finger protei 21.9 30 0.001 27.0 1.2 48 59-111 10-61 (75)
202 1x62_A C-terminal LIM domain p 21.9 56 0.0019 25.2 2.8 39 58-114 15-53 (79)
203 3a1b_A DNA (cytosine-5)-methyl 21.6 50 0.0017 30.0 2.7 45 56-109 77-132 (159)
204 1wg8_A Predicted S-adenosylmet 21.3 35 0.0012 34.0 1.7 31 276-306 207-237 (285)
205 1wfl_A Zinc finger protein 216 20.7 1.3E+02 0.0043 23.9 4.5 25 58-90 25-49 (74)
206 1x68_A FHL5 protein; four-and- 20.4 36 0.0012 26.1 1.3 42 58-113 5-46 (76)
207 3mjh_B Early endosome antigen 20.4 27 0.00091 23.6 0.5 11 103-113 6-16 (34)
208 3tka_A Ribosomal RNA small sub 20.3 36 0.0012 34.8 1.7 29 277-305 249-277 (347)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.94 E-value=2.6e-25 Score=239.53 Aligned_cols=202 Identities=17% Similarity=0.206 Sum_probs=167.3
Q ss_pred CCCceeEEEE----ecCC--cchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecC----cccCHHhHHHHHHHHhc
Q 009657 261 HQPATDLVLV----ASPN--GPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPL----KRMTSYGKRMALQVIDR 330 (529)
Q Consensus 261 ~r~P~DLV~V----GSM~--G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl----~~mt~~~k~~a~~~I~~ 330 (529)
.++|+|+||| |||. |.||+.+|+++..+++.|.++|||+||+|++.++.++|+ .+++..++..++.+|+.
T Consensus 74 ~~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~ 153 (464)
T 4fx5_A 74 SGSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGR 153 (464)
T ss_dssp --CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHT
T ss_pred CCCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHc
Confidence 3789999999 8999 999999999999999999999999999999999999985 46788899999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchh--hh----c-ccccccEEEEeeeeeccC--------
Q 009657 331 LFYMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYH--AI----N-LQVPFPVHRFHVGFGFGS-------- 395 (529)
Q Consensus 331 L~a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~--~~----~-~~~~v~I~TfgvGfGfG~-------- 395 (529)
|.++|||+++.||+.|++++.++ ++..+.|||||||+++... .+ . ...++.||+||+|-+++.
T Consensus 154 L~~~GgT~l~~aL~~A~~~l~~~--~~~~~~IILLTDG~~~~~~~~~l~~~~~a~~~~i~i~tiGiG~~~d~~~L~~IA~ 231 (464)
T 4fx5_A 154 LHANGGTAMGRWLAQAGRIFDTA--PSAIKHAILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIAD 231 (464)
T ss_dssp CCCCSCCCHHHHHHHHHHHHTTC--TTSEEEEEEEESSCCTTSCHHHHHHHHHHHTTTCEEEEEEESSSSCHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHhcC--CCCCCEEEEEcCCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCccCHHHHHHHHH
Confidence 99999999999999999999863 4667899999999986422 11 1 246789999954433221
Q ss_pred ----------ChhhHHHHHHHHHHhhhceeeeeEEEEEee------------------------C-----CceEEcCCcC
Q 009657 396 ----------SNGFVMHEFEEFLATLLGGNVQEIQLRIGE------------------------E-----ARIIRLGELR 436 (529)
Q Consensus 396 ----------d~~~~~~~f~~~la~~l~~va~dv~l~i~~------------------------~-----~~~v~lGdL~ 436 (529)
+.+.+...|.+.+..+++++++|++|.|.. . ...|.+|||
T Consensus 232 ~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l- 310 (464)
T 4fx5_A 232 ALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW- 310 (464)
T ss_dssp HTTCCEEEESSGGGHHHHHHHHHHHHHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-
T ss_pred hCCCEEEEcCCHHHHHHHHHHHHHHhhchheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCCCcEEEEECCcC-
Confidence 124567788999999999999999998721 1 257999999
Q ss_pred CCcEEEEEEEe-------CCeee-EEEEEEEecCCcc
Q 009657 437 GGEERRILLDL-------GECED-VRVEYSYVEGGID 465 (529)
Q Consensus 437 age~r~~L~el-------~~~~~-~~v~~~Y~dp~~~ 465 (529)
+||+|++||+| +...+ ++|+|+|.+|.+.
T Consensus 311 ~~e~r~~lv~l~v~~~~~g~~~~~~~v~~~y~~~~~~ 347 (464)
T 4fx5_A 311 GAESREYHICVEVEPGNIGQEKLAGRVQLVAKDAGGA 347 (464)
T ss_dssp SSEEEEEEEEEECCCCCTTCEEEEEEEEEEEEETTEE
T ss_pred CCCeEEEEEEEEcCCCCCCceeEEEEEEEEEcCCCcc
Confidence 99999999999 23344 7999999999965
No 2
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.70 E-value=1.2e-16 Score=149.36 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=106.2
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc-c
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF-Y 333 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~-a 333 (529)
..++||||| |||.+.+++.+|+++..+++.|. +++|++||+|++.++.++|++.....++..++++|+.+. .
T Consensus 15 ~~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~ 94 (178)
T 2xgg_A 15 TNQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPYK 94 (178)
T ss_dssp TTCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHCCCC
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCccCHHHHHHHHHhCCCC
Confidence 358999999 89999999999999999999996 348999999999999999998765447889999999998 7
Q ss_pred CCCCChHHHHHHHHHHHHhc---cCCCCCCEEEEccCCCCcchhhh----c--ccccccEEEEeee
Q 009657 334 MGQADPIEGLKKGIKILEDR---AHKNPQSCILHLSDTPTRTYHAI----N--LQVPFPVHRFHVG 390 (529)
Q Consensus 334 ~GgTni~~gL~~A~~~l~~~---~~~n~v~~IILLTDG~~~~~~~~----~--~~~~v~I~TfgvG 390 (529)
+|+|+++.||+.|++.+... ..++..+.|||+|||.++..... . .+.++.|+++|||
T Consensus 95 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG 160 (178)
T 2xgg_A 95 KGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVG 160 (178)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC
T ss_pred CCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcC
Confidence 89999999999999987543 23456678999999998754211 1 2567999998443
No 3
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.67 E-value=2.8e-16 Score=156.77 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=108.5
Q ss_pred CCceeEEEE----ecCCcchH-HHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcc--
Q 009657 262 QPATDLVLV----ASPNGPHL-RLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRL-- 331 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL-~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L-- 331 (529)
+.|+||||| |||.+.++ +.+|+++..+++.|. +++||+||+|++.++.++|++.....++..++.+|+.|
T Consensus 16 ~~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~ 95 (266)
T 4hqo_A 16 NEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRK 95 (266)
T ss_dssp CCCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHHHCHHHHHHHHHHHHH
T ss_pred CCceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCccCHHHHHHHHHHhhh
Confidence 478999999 89999988 599999999999998 78999999999999999999876555689999999999
Q ss_pred --ccCCCCChHHHHHHHHHHHHhc-cCCCCCCEEEEccCCCCcchhhh----c--ccccccEEEEee
Q 009657 332 --FYMGQADPIEGLKKGIKILEDR-AHKNPQSCILHLSDTPTRTYHAI----N--LQVPFPVHRFHV 389 (529)
Q Consensus 332 --~a~GgTni~~gL~~A~~~l~~~-~~~n~v~~IILLTDG~~~~~~~~----~--~~~~v~I~Tfgv 389 (529)
.++|+|+++.||+.|.+++... ..++..+.|||||||.+++.... . ...+|.|++|||
T Consensus 96 ~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGi 162 (266)
T 4hqo_A 96 TYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGI 162 (266)
T ss_dssp HCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 6899999999999999998875 33556778999999998753221 1 266899999843
No 4
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.66 E-value=9.1e-16 Score=146.40 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=101.5
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccC
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYM 334 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~ 334 (529)
+.|+||||| |||.+.+++.+|+++..+++.|. +++|++||+|++.++..+|++..+ ++..++++|+.|...
T Consensus 11 ~~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~--~~~~~~~~i~~l~~~ 88 (202)
T 1ijb_A 11 SRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRK--RPSELRRIASQVKYA 88 (202)
T ss_dssp CSCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCC--CHHHHHHHHHTCCCC
T ss_pred CCcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCC--CHHHHHHHHHhCcCC
Confidence 358999999 89999999999999999999997 579999999999999999998654 478899999999875
Q ss_pred CC--CChHHHHHHHHHHH-HhccCCCCCCEEEEccCCCCcch--hhh----c--ccccccEEEEee
Q 009657 335 GQ--ADPIEGLKKGIKIL-EDRAHKNPQSCILHLSDTPTRTY--HAI----N--LQVPFPVHRFHV 389 (529)
Q Consensus 335 Gg--Tni~~gL~~A~~~l-~~~~~~n~v~~IILLTDG~~~~~--~~~----~--~~~~v~I~Tfgv 389 (529)
|| |+++.||+.|++.+ .....++..+.|||||||.++.. ..+ + ...++.|+++||
T Consensus 89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igv 154 (202)
T 1ijb_A 89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGI 154 (202)
T ss_dssp CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEec
Confidence 44 99999999998654 33233456778999999988642 111 1 256789998843
No 5
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.65 E-value=7.2e-16 Score=154.55 Aligned_cols=129 Identities=20% Similarity=0.214 Sum_probs=107.0
Q ss_pred CCceeEEEE----ecCCcchH-HHHHHHHHHHHHhcCC---CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc-
Q 009657 262 QPATDLVLV----ASPNGPHL-RLLKQSMALVVFSLRP---NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF- 332 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL-~l~K~Am~~vi~~L~~---~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~- 332 (529)
+.++||||| |||.+..+ +.+|+++..+++.|.. ++||+||+|++.++.++|++.....++..++.+|+.|.
T Consensus 19 ~~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~ 98 (281)
T 4hqf_A 19 NDEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLS 98 (281)
T ss_dssp CSCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHH
T ss_pred CCceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhh
Confidence 468999999 89998665 9999999999999987 89999999999999999998876667888999999986
Q ss_pred ---cCCCCChHHHHHHHHHHHHhcc-CCCCCCEEEEccCCCCcchhhh----c--ccccccEEEEeee
Q 009657 333 ---YMGQADPIEGLKKGIKILEDRA-HKNPQSCILHLSDTPTRTYHAI----N--LQVPFPVHRFHVG 390 (529)
Q Consensus 333 ---a~GgTni~~gL~~A~~~l~~~~-~~n~v~~IILLTDG~~~~~~~~----~--~~~~v~I~TfgvG 390 (529)
.+|+|+++.||+.|.+.+.... .++..+.|||||||.+++.... . ...+|.|++||||
T Consensus 99 ~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG 166 (281)
T 4hqf_A 99 TNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIG 166 (281)
T ss_dssp TTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred ccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4899999999999999887653 2455678999999998753211 1 2577999998443
No 6
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.63 E-value=2e-15 Score=144.37 Aligned_cols=111 Identities=13% Similarity=0.174 Sum_probs=93.5
Q ss_pred CCCceeEEEE----ecCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc
Q 009657 261 HQPATDLVLV----ASPNGPHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY 333 (529)
Q Consensus 261 ~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a 333 (529)
++.|+||||| |||.+.+++.+|+++..+++.| .+++|++||+|++.++.++++......++..++.+|+.|..
T Consensus 12 ~~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 91 (223)
T 1q0p_A 12 PSGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINY 91 (223)
T ss_dssp ---CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCT
T ss_pred CCCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHHHHHHHHhccc
Confidence 4679999999 8999999999999999998776 45799999999999999998876555578899999999985
Q ss_pred -----CCCCChHHHHHHHHHHHHhccC------CCCCCEEEEccCCCCc
Q 009657 334 -----MGQADPIEGLKKGIKILEDRAH------KNPQSCILHLSDTPTR 371 (529)
Q Consensus 334 -----~GgTni~~gL~~A~~~l~~~~~------~n~v~~IILLTDG~~~ 371 (529)
+|+|+++.||+.|++.+..... ++..+.|||+|||.++
T Consensus 92 ~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~ 140 (223)
T 1q0p_A 92 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHN 140 (223)
T ss_dssp TSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCC
T ss_pred ccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCC
Confidence 6999999999999999975432 2455679999999876
No 7
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.61 E-value=2.1e-15 Score=141.18 Aligned_cols=125 Identities=11% Similarity=0.131 Sum_probs=97.0
Q ss_pred ceeEEEE----ecCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc-CCCC
Q 009657 264 ATDLVLV----ASPNGPHLRLLKQSMALVVFSLRPN-DRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY-MGQA 337 (529)
Q Consensus 264 P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~-DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a-~GgT 337 (529)
|+||||| |||.+.+++.+|+++..+++.|.+. +|++||+|++.++.++|++... ++..+..+++.+.. +|+|
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~--~~~~~~~~~~~i~~~~g~T 79 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYV--KRKDPDALLKHVKHMLLLT 79 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHH--HHCCHHHHHTTCCCCCBCC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccC--CHHHHHHHHHhcccCCCCC
Confidence 7899999 8999999999999999999999765 6999999999999999987532 33345556666654 6899
Q ss_pred ChHHHHHHHHHH-HHhc--cCCCCCCEEEEccCCCCcchhhhcccccccEEEEeee
Q 009657 338 DPIEGLKKGIKI-LEDR--AHKNPQSCILHLSDTPTRTYHAINLQVPFPVHRFHVG 390 (529)
Q Consensus 338 ni~~gL~~A~~~-l~~~--~~~n~v~~IILLTDG~~~~~~~~~~~~~v~I~TfgvG 390 (529)
+++.||+.|++. +... ..++..+.|||||||.+++........++.|+++|||
T Consensus 80 ~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~i~i~~igvG 135 (179)
T 1mjn_A 80 NTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIG 135 (179)
T ss_dssp CHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCCGGGTTSEEEEEEES
T ss_pred hHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcchHHHCCCEEEEEEcc
Confidence 999999999974 3322 2245567899999999875433333567999998444
No 8
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.61 E-value=1.9e-15 Score=143.82 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=101.1
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccC
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYM 334 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~ 334 (529)
..|+||||| |||.+.+++.+|+++..+++.| .+++||+||+|++.++.++|++.. .++..++++|+.|...
T Consensus 19 ~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~--~~~~~~~~~i~~l~~~ 96 (199)
T 3zqk_A 19 SMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEA--QSKGDILQRLREIRYQ 96 (199)
T ss_dssp CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSC--CCHHHHHHHHHHCCCC
T ss_pred CCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCc--CCHHHHHHHHHhCcCC
Confidence 578999999 8999999999999999999999 589999999999999999999754 3578899999999865
Q ss_pred C--CCChHHHHHHHHHHHHh-c--cCCCCCCEEEEccCCCCcchhhhcccccccEEEEee
Q 009657 335 G--QADPIEGLKKGIKILED-R--AHKNPQSCILHLSDTPTRTYHAINLQVPFPVHRFHV 389 (529)
Q Consensus 335 G--gTni~~gL~~A~~~l~~-~--~~~n~v~~IILLTDG~~~~~~~~~~~~~v~I~Tfgv 389 (529)
| +|+++.||+.|++.+.. . ..++..+.|||||||...+... ....++.|++|||
T Consensus 97 gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~-~~~~~v~v~~iGi 155 (199)
T 3zqk_A 97 GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK-RLPGDIQVVPIGV 155 (199)
T ss_dssp CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC-CCCTTEEEEEEEE
T ss_pred CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH-HHhCCCEEEEEEc
Confidence 5 49999999999985432 1 2234566899999998754211 2246788888843
No 9
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.61 E-value=1.2e-15 Score=142.97 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=94.8
Q ss_pred CCCceeEEEE----ecCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCC-CeEEeecCcccCHHhHHHHHHHHhccccC
Q 009657 261 HQPATDLVLV----ASPNGPHLRLLKQSMALVVFSL-RPNDRLAIVTYSS-AAARVFPLKRMTSYGKRMALQVIDRLFYM 334 (529)
Q Consensus 261 ~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L-~~~DrlsIVtFss-~a~~l~pl~~mt~~~k~~a~~~I~~L~a~ 334 (529)
.|.|.|+||| |||.|.|++.+|+++..+++.| .++|+++||+|++ .+..++|++. ++..++..|+.|.++
T Consensus 2 ~~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~----~~~~~~~~i~~l~~~ 77 (189)
T 2x31_A 2 EMSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSR----SLTQTKRQLQGLPGG 77 (189)
T ss_dssp CSSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCS----CHHHHHHHHHHCCCC
T ss_pred CCCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCC----CHHHHHHHHhcCCCC
Confidence 4789999999 8999999999999999999888 9999999999996 6877888764 578889999999999
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc
Q 009657 335 GQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 335 GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~ 372 (529)
|+|++..||+.|++++.....++..+.|||+|||.++.
T Consensus 78 g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~ 115 (189)
T 2x31_A 78 GGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNI 115 (189)
T ss_dssp BCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSS
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCC
Confidence 99999999999999998866566778999999998763
No 10
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.61 E-value=5.2e-15 Score=137.68 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=95.2
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc---c
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFS-LRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF---Y 333 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~-L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~---a 333 (529)
+.|+||||| |||.+ ....+|++++.++.. ++++||++||+|++.++.++|++. ++..++.+|+.|. +
T Consensus 5 ~~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~~----~~~~~~~~i~~l~~~~~ 79 (185)
T 3n2n_F 5 YGGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTE----DREQIRQGLEELQKVLP 79 (185)
T ss_dssp BSEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEEC----CHHHHHHHHHHHHTCCC
T ss_pred CCCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccCC----CHHHHHHHHHHHhhhcC
Confidence 678999999 89987 467777777777766 478999999999999999999985 4566666666654 7
Q ss_pred CCCCChHHHHHHHHHHHHhc--cCCCCCCEEEEccCCCCcchhh-----h---cccccccEEEEeee
Q 009657 334 MGQADPIEGLKKGIKILEDR--AHKNPQSCILHLSDTPTRTYHA-----I---NLQVPFPVHRFHVG 390 (529)
Q Consensus 334 ~GgTni~~gL~~A~~~l~~~--~~~n~v~~IILLTDG~~~~~~~-----~---~~~~~v~I~TfgvG 390 (529)
+|+|+++.||+.|++.+... ...+..+.|||+|||.++.... . ..+.++.|+++|+|
T Consensus 80 ~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg 146 (185)
T 3n2n_F 80 GGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVK 146 (185)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECS
T ss_pred CCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEec
Confidence 89999999999999987432 2234567899999999865321 1 12667899998444
No 11
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.60 E-value=2.1e-15 Score=142.23 Aligned_cols=127 Identities=17% Similarity=0.219 Sum_probs=101.4
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc-CC
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSLR-PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY-MG 335 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~-~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a-~G 335 (529)
..|+||||| |||.+.+++.+|+++..+++.|. +++|++||+|++.++.++|++.. .++..++.+|+.|.. +|
T Consensus 3 ~~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~~--~~~~~~~~~i~~l~~~~g 80 (194)
T 1mf7_A 3 QEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEF--QNNPNPRSLVKPITQLLG 80 (194)
T ss_dssp CCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHHH--HHSCCHHHHHTTCCCCCS
T ss_pred CCCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCCc--CCHHHHHHHHHhCcCCCC
Confidence 368999999 89999999999999999999996 57899999999999999998653 346678899999985 89
Q ss_pred CCChHHHHHHHHHHHHhc---cCCCCCCEEEEccCCCCc-chh---h-hc--ccccccEEEEeee
Q 009657 336 QADPIEGLKKGIKILEDR---AHKNPQSCILHLSDTPTR-TYH---A-IN--LQVPFPVHRFHVG 390 (529)
Q Consensus 336 gTni~~gL~~A~~~l~~~---~~~n~v~~IILLTDG~~~-~~~---~-~~--~~~~v~I~TfgvG 390 (529)
+|+++.||+.|++.+... ..++..+.|||+|||.++ +.. . .. ...++.|+++|+|
T Consensus 81 ~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG 145 (194)
T 1mf7_A 81 RTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVG 145 (194)
T ss_dssp CBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEES
T ss_pred CchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEec
Confidence 999999999999755321 223456789999999887 321 1 11 2567889988443
No 12
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.60 E-value=6.7e-15 Score=138.29 Aligned_cols=125 Identities=13% Similarity=0.134 Sum_probs=100.0
Q ss_pred CceeEEEE----ecCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc-C
Q 009657 263 PATDLVLV----ASPNGPHLRLLKQSMALVVFSLRP---NDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY-M 334 (529)
Q Consensus 263 ~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~---~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a-~ 334 (529)
.|+||||| |||.+.+++.+|+++..+++.|.. ++|++||+|++.++.++|+... .++..+..+|+.|.. +
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~--~~~~~~~~~i~~l~~~~ 81 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVV--PEKAHLLSLVDVMQREG 81 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCC--CCHHHHHHHHHTCCCCC
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCC--CCHHHHHHHHHhCcCCC
Confidence 58999999 899999999999999999999963 4799999999999999998643 368889999999985 8
Q ss_pred CCCChHHHHHHHHHHHHhcc---CCCCCCEEEEccCCCCcch-hhh---cccccccEEEEee
Q 009657 335 GQADPIEGLKKGIKILEDRA---HKNPQSCILHLSDTPTRTY-HAI---NLQVPFPVHRFHV 389 (529)
Q Consensus 335 GgTni~~gL~~A~~~l~~~~---~~n~v~~IILLTDG~~~~~-~~~---~~~~~v~I~Tfgv 389 (529)
|+|+++.||+.|++.+.... .++..+.|||||||..++. ... ....++.|+++|+
T Consensus 82 g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~~~~~~~~~~~~gi~v~~igv 143 (189)
T 1atz_A 82 GPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSVDAAADAARSNRVTVFPIGI 143 (189)
T ss_dssp CCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSCCHHHHHHHHHTTEEEEEEEE
T ss_pred CcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCchHHHHHHHHHHCCCEEEEEEc
Confidence 99999999999999887642 2333445888999876432 111 1256789999843
No 13
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.60 E-value=3.4e-15 Score=161.01 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=108.0
Q ss_pred ccCCCceeEEEE----ecCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcc
Q 009657 259 LAHQPATDLVLV----ASPNGPHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRL 331 (529)
Q Consensus 259 ~~~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L 331 (529)
...+.++||||| |||.+.+++.+|+++..+++.| +++||++||+|++.++.++|++.....+++.++.+|+.|
T Consensus 4 ~~~~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l 83 (509)
T 2odp_A 4 IQRSGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENA 83 (509)
T ss_dssp CCSSSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTC
T ss_pred ecCCCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCCCCHHHHHHHHHhc
Confidence 345689999999 8999999999999999999999 899999999999999999999866556789999999999
Q ss_pred ccC-----CCCChHHHHHHHHHHHHhccCC---------CCCCEEEEccCCCCcchh-------hhc--------ccccc
Q 009657 332 FYM-----GQADPIEGLKKGIKILEDRAHK---------NPQSCILHLSDTPTRTYH-------AIN--------LQVPF 382 (529)
Q Consensus 332 ~a~-----GgTni~~gL~~A~~~l~~~~~~---------n~v~~IILLTDG~~~~~~-------~~~--------~~~~v 382 (529)
.+. |||++..||+.|++++...... +..+.|||||||.++... .+. .+.++
T Consensus 84 ~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 163 (509)
T 2odp_A 84 NYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYL 163 (509)
T ss_dssp CGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGE
T ss_pred ccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCce
Confidence 876 9999999999999999653321 234679999999876421 111 14568
Q ss_pred cEEEEeee
Q 009657 383 PVHRFHVG 390 (529)
Q Consensus 383 ~I~TfgvG 390 (529)
.|++||||
T Consensus 164 ~i~~iGvG 171 (509)
T 2odp_A 164 DIYAIGVG 171 (509)
T ss_dssp EEEEEEES
T ss_pred EEEEEEcC
Confidence 89988443
No 14
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=6.1e-15 Score=140.92 Aligned_cols=123 Identities=13% Similarity=0.181 Sum_probs=100.7
Q ss_pred CCCceeEEEE----ecCCcc-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcc
Q 009657 261 HQPATDLVLV----ASPNGP-----HLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRL 331 (529)
Q Consensus 261 ~r~P~DLV~V----GSM~G~-----kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L 331 (529)
.+.|+|+||| |||.+. ||+.+|+++..+++.+. +|+++||+|++.++.++|++. ++..+..+|+.|
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~~----~~~~~~~~l~~l 82 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPITS----DYISAKMFLESI 82 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEES----CHHHHHHHHHTC
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCCC----CHHHHHHHHHhc
Confidence 4789999999 899875 99999999999999994 999999999999999999874 466777788888
Q ss_pred cc----CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchh--hh---cccccccEEEEeee
Q 009657 332 FY----MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYH--AI---NLQVPFPVHRFHVG 390 (529)
Q Consensus 332 ~a----~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~--~~---~~~~~v~I~TfgvG 390 (529)
.+ +|+|+++.||+.|++.+... ++..+.|||+|||.++... .. ....++.|++||+|
T Consensus 83 ~~~~~~~g~T~l~~al~~a~~~l~~~--~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig 148 (218)
T 3ibs_A 83 SPSLISKQGTAIGEAINLATRSFTPQ--EGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVG 148 (218)
T ss_dssp CGGGCCSCSCCHHHHHHHHHTTSCSC--SSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEES
T ss_pred CcccCCCCCCcHHHHHHHHHHHHhhC--CCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEec
Confidence 76 79999999999999988764 4566789999999886531 11 12678999999554
No 15
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.59 E-value=1.3e-14 Score=134.58 Aligned_cols=127 Identities=20% Similarity=0.205 Sum_probs=92.6
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccCCC
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFS-LRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYMGQ 336 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~-L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~Gg 336 (529)
+.|+|++|| |||.+.++.. +..++.++.. +.++||++||+|++.++.++|++. +......+...+..+.++|+
T Consensus 4 ~~~~dvv~vlD~SgSM~~~~~~~-~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~g~ 81 (182)
T 1shu_X 4 RRAFDLYFVLDKSGSVANNWIEI-YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTG-DRGKISKGLEDLKRVSPVGE 81 (182)
T ss_dssp BSCEEEEEEEECSGGGGGGHHHH-HHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEEC-CHHHHHHHHHHHHTCCCCSC
T ss_pred CCceeEEEEEECCCCcccCHHHH-HHHHHHHHHHhcCCCceEEEEEeCCCceEEECCCC-CHHHHHHHHHhcccCCCCCC
Confidence 578999999 8999876653 3333333333 568999999999999999999873 22233334444444558999
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchhh-----h---cccccccEEEEeee
Q 009657 337 ADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYHA-----I---NLQVPFPVHRFHVG 390 (529)
Q Consensus 337 Tni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~~-----~---~~~~~v~I~TfgvG 390 (529)
|++..||+.|++.+.....++..+.|||+|||.+++... . ....++.|+++|+|
T Consensus 82 T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg 143 (182)
T 1shu_X 82 TYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVL 143 (182)
T ss_dssp CCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred chHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCC
Confidence 999999999999998765456677899999998765321 1 12567999998443
No 16
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.57 E-value=1.3e-14 Score=163.17 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=97.7
Q ss_pred ccCCCceeEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcc
Q 009657 259 LAHQPATDLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRL 331 (529)
Q Consensus 259 ~~~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L 331 (529)
...+.++||||| |||.+.+++.+|+++..+++.|. .+|||+||+|++.++.++|++..+..++..++++|+.|
T Consensus 238 ~~~~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~i~~l 317 (741)
T 3hrz_D 238 LDPSGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEI 317 (741)
T ss_dssp CCTTCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTC
T ss_pred cCCCCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCHHHHHHHHHhc
Confidence 455789999999 89999999999999999999986 46999999999999999999987777899999999999
Q ss_pred c-----cCCCCChHHHHHHHHHHHHhcc------CCCCCCEEEEccCCCCc
Q 009657 332 F-----YMGQADPIEGLKKGIKILEDRA------HKNPQSCILHLSDTPTR 371 (529)
Q Consensus 332 ~-----a~GgTni~~gL~~A~~~l~~~~------~~n~v~~IILLTDG~~~ 371 (529)
. ++|+|++++||+.|++++.... .++..+.|||||||+++
T Consensus 318 ~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n 368 (741)
T 3hrz_D 318 NYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHN 368 (741)
T ss_dssp CGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCC
T ss_pred ccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccc
Confidence 8 7999999999999999983211 12234579999999776
No 17
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.55 E-value=2.3e-14 Score=135.96 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=98.8
Q ss_pred CceeEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccC-
Q 009657 263 PATDLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYM- 334 (529)
Q Consensus 263 ~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~- 334 (529)
.|+||||| |||. .++.+|+++..+++.|. +++|++||+|++.++.++|++.. .++..++.+|+.|.+.
T Consensus 5 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~--~~~~~~~~~i~~l~~~~ 80 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTY--KTKEEMIVATSQTSQYG 80 (200)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTC--SSHHHHHHHHHHCCCCC
T ss_pred CcccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCc--CCHHHHHHHHHhhhccC
Confidence 47999999 8998 49999999999999996 69999999999999999999843 4688899999999865
Q ss_pred C-CCChHHHHHHHHHH-HHhc--cCCCCCCEEEEccCCCCcchhhh----c--ccccccEEEEee
Q 009657 335 G-QADPIEGLKKGIKI-LEDR--AHKNPQSCILHLSDTPTRTYHAI----N--LQVPFPVHRFHV 389 (529)
Q Consensus 335 G-gTni~~gL~~A~~~-l~~~--~~~n~v~~IILLTDG~~~~~~~~----~--~~~~v~I~Tfgv 389 (529)
| +|+++.||+.|.+. +... ..++..+.|||||||.+++.... . .+.++.|+++|+
T Consensus 81 G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igv 145 (200)
T 1v7p_C 81 GDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAV 145 (200)
T ss_dssp CSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEe
Confidence 4 59999999999996 4321 22455678999999988754211 1 256789999855
No 18
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.8e-14 Score=142.10 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=112.0
Q ss_pred ecCCc-----chHHHHHHHHHHHHH---hcCCCCeEEEEEeCCCe-EEeecCcccCHHhHHHHHHHHhccccCCCCChHH
Q 009657 271 ASPNG-----PHLRLLKQSMALVVF---SLRPNDRLAIVTYSSAA-ARVFPLKRMTSYGKRMALQVIDRLFYMGQADPIE 341 (529)
Q Consensus 271 GSM~G-----~kL~l~K~Am~~vi~---~L~~~DrlsIVtFss~a-~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTni~~ 341 (529)
+||.. +||+.+|.|+..+++ +++|.|+|+||+|++.+ .++.|++. ++..++.+|+.|.++|+|++..
T Consensus 14 ~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~----D~~~il~aL~~l~~~G~T~l~~ 89 (268)
T 4b4t_W 14 EYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTA----EFGKILAGLHDTQIEGKLHMAT 89 (268)
T ss_dssp STTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEES----CHHHHHHHHTTCCCCSCCCHHH
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcc----hHHHHHHHhhhcCcCCCCChHH
Confidence 89963 589999999999988 46899999999998765 56667653 5788999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEccCCCCcch-hhh------cccccccEEEEeeeeeccCChhhHHHHHHHHHHhh
Q 009657 342 GLKKGIKILEDRAHKNPQSCILHLSDTPTRTY-HAI------NLQVPFPVHRFHVGFGFGSSNGFVMHEFEEFLATL 411 (529)
Q Consensus 342 gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~-~~~------~~~~~v~I~TfgvGfGfG~d~~~~~~~f~~~la~~ 411 (529)
||+.|++.|+++..++..++|||+|||..+.. ..+ ..+.+|.|+++ |||-++++...++.|.+...+-
T Consensus 90 gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vI--gFG~~~~n~~kLe~l~~~~Ng~ 164 (268)
T 4b4t_W 90 ALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDII--NFGEIEQNTELLDEFIAAVNNP 164 (268)
T ss_dssp HHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEE--EESSCCSSCCHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEE--EeCCCccchHHHHHHHHHhcCC
Confidence 99999999999999999999999999976432 111 12678999998 6666667788899999888764
No 19
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.53 E-value=3.8e-14 Score=136.89 Aligned_cols=125 Identities=12% Similarity=0.165 Sum_probs=98.6
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccC
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYM 334 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~ 334 (529)
..++||||| |||. .++.+|+++..+++.|. +++|++||+|++.++.++|+... .++..++.+|+.|...
T Consensus 20 ~~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~--~~~~~~~~~i~~l~~~ 95 (223)
T 2b2x_A 20 STQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKY--SSTEEVLVAANKIVQR 95 (223)
T ss_dssp --CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTC--CSHHHHHHHHTTCCCC
T ss_pred CCcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCC--CCHHHHHHHHHhhhcc
Confidence 357999999 8998 48999999999999985 79999999999999999999543 3578889999999865
Q ss_pred CC--CChHHHHHHHHHHH-Hhc--cCCCCCCEEEEccCCCCcchhhh----c--ccccccEEEEeee
Q 009657 335 GQ--ADPIEGLKKGIKIL-EDR--AHKNPQSCILHLSDTPTRTYHAI----N--LQVPFPVHRFHVG 390 (529)
Q Consensus 335 Gg--Tni~~gL~~A~~~l-~~~--~~~n~v~~IILLTDG~~~~~~~~----~--~~~~v~I~TfgvG 390 (529)
|| |+++.||+.|++.+ ... ..++..+.|||+|||.++..... + ...++.|+++|+|
T Consensus 96 gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~v~~igvG 162 (223)
T 2b2x_A 96 GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAIL 162 (223)
T ss_dssp CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEec
Confidence 54 99999999999874 321 23456678999999998754211 1 2678999998544
No 20
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.52 E-value=4.6e-14 Score=135.22 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=98.4
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccccC
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFYM 334 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a~ 334 (529)
..|+||||| |||. .++.+|+++..+++.|. +++|++||+|++.++.++|+... .++..++.+|+.+.+.
T Consensus 5 ~~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~--~~~~~~~~~i~~l~~~ 80 (213)
T 1pt6_A 5 STQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKY--SSTEEVLVAAKKIVQR 80 (213)
T ss_dssp --CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTC--SSHHHHHHHHHTCCCC
T ss_pred CCCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEecccc--CCHHHHHHHHHhccCC
Confidence 358999999 8998 58999999999999985 79999999999999999999543 3678889999999865
Q ss_pred C--CCChHHHHHHHHHHH-Hhc--cCCCCCCEEEEccCCCCcchhhh----c--ccccccEEEEeee
Q 009657 335 G--QADPIEGLKKGIKIL-EDR--AHKNPQSCILHLSDTPTRTYHAI----N--LQVPFPVHRFHVG 390 (529)
Q Consensus 335 G--gTni~~gL~~A~~~l-~~~--~~~n~v~~IILLTDG~~~~~~~~----~--~~~~v~I~TfgvG 390 (529)
| +|+++.||+.|.+.+ ... ..++..+.|||+|||.++..... . .+.++.|+++|+|
T Consensus 81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig 147 (213)
T 1pt6_A 81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAIL 147 (213)
T ss_dssp CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEec
Confidence 4 489999999999874 321 23456778999999988754211 1 2567899998544
No 21
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.51 E-value=1.6e-14 Score=135.96 Aligned_cols=128 Identities=13% Similarity=0.236 Sum_probs=100.9
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhccc-cCC
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSL-RPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLF-YMG 335 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L-~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~-a~G 335 (529)
+.|+||||| |||.+.++..+|++++.+++.| .++||++||+|++.++.++|++.. .++..+..+|+.+. .+|
T Consensus 7 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~g 84 (198)
T 1n3y_A 7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEF--RRSSNPLSLLASVHQLQG 84 (198)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHHH--HHCSSGGGGGTTCCCCCS
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecCcc--CCHHHHHHHHhcCcCCCC
Confidence 478999999 8999999999999999999999 799999999999999999998542 34566788888876 689
Q ss_pred CCChHHHHHHHHHHH-Hhc--cCCCCCCEEEEccCCCCc-chh---h-hc--ccccccEEEEeeee
Q 009657 336 QADPIEGLKKGIKIL-EDR--AHKNPQSCILHLSDTPTR-TYH---A-IN--LQVPFPVHRFHVGF 391 (529)
Q Consensus 336 gTni~~gL~~A~~~l-~~~--~~~n~v~~IILLTDG~~~-~~~---~-~~--~~~~v~I~TfgvGf 391 (529)
+|+++.||+.|++.+ ... ..++..+.|||+|||.++ +.. . .. ...++.|+++|+|-
T Consensus 85 ~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~ 150 (198)
T 1n3y_A 85 FTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGL 150 (198)
T ss_dssp CBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESG
T ss_pred CchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccc
Confidence 999999999999544 432 124556789999999887 321 1 11 26789999995543
No 22
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.44 E-value=2.5e-13 Score=145.68 Aligned_cols=109 Identities=12% Similarity=0.173 Sum_probs=91.2
Q ss_pred ceeEEEE----ecCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc---
Q 009657 264 ATDLVLV----ASPNGPHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY--- 333 (529)
Q Consensus 264 P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a--- 333 (529)
|+||||| |||.+.+++.+|+++..+++.| ..++|++||+|++.++.++++......+++.++.+|+.|..
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 80 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDH 80 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGS
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHHHHHhCcCccc
Confidence 6899999 8999999999999999999976 45799999999999999997765544678899999999984
Q ss_pred --CCCCChHHHHHHHHHHHHhccC------CCCCCEEEEccCCCCcc
Q 009657 334 --MGQADPIEGLKKGIKILEDRAH------KNPQSCILHLSDTPTRT 372 (529)
Q Consensus 334 --~GgTni~~gL~~A~~~l~~~~~------~n~v~~IILLTDG~~~~ 372 (529)
+|+|++..||+.|++++..... ++..+.|||||||.++.
T Consensus 81 ~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~ 127 (497)
T 1rrk_A 81 KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNM 127 (497)
T ss_dssp CCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCS
T ss_pred cccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCccc
Confidence 6799999999999999953322 33556899999997763
No 23
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.38 E-value=3.7e-12 Score=121.69 Aligned_cols=137 Identities=12% Similarity=0.118 Sum_probs=101.2
Q ss_pred eEEEE----ecCC-----cchHHHHHHHHHHHHHh---cCCCCeEEEEEeCC-CeEEeecCcccCHHhHHHHHHHHhccc
Q 009657 266 DLVLV----ASPN-----GPHLRLLKQSMALVVFS---LRPNDRLAIVTYSS-AAARVFPLKRMTSYGKRMALQVIDRLF 332 (529)
Q Consensus 266 DLV~V----GSM~-----G~kL~l~K~Am~~vi~~---L~~~DrlsIVtFss-~a~~l~pl~~mt~~~k~~a~~~I~~L~ 332 (529)
.+||+ +||. .+||+.+|+++..++.. .+|+||++||+|++ .+.++.|++. ++..+..+|+.+.
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~----d~~~i~~~L~~l~ 79 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTR----DYGKFLSAMHDLP 79 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEES----CHHHHHHHHTTCC
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCC----CHHHHHHHHHcCC
Confidence 35666 7996 36999999999888764 37999999999999 5999999973 5888999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhccCCCCCCEEEEcc-CCCCcchhhh------cccccccEEEEeeeeeccCChhhHHHHHH
Q 009657 333 YMGQADPIEGLKKGIKILEDRAHKNPQSCILHLS-DTPTRTYHAI------NLQVPFPVHRFHVGFGFGSSNGFVMHEFE 405 (529)
Q Consensus 333 a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLT-DG~~~~~~~~------~~~~~v~I~TfgvGfGfG~d~~~~~~~f~ 405 (529)
++|+|++..||..|++.|+++..++...+|||++ |+-..+.... ..+.+|.|+++ |||-+.++.. ++.|.
T Consensus 80 ~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~I--g~G~~~~~~~-l~~la 156 (192)
T 2x5n_A 80 VRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDII--HIGELQNESA-LQHFI 156 (192)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEE--EESCC---CH-HHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEE--EeCCCCccHH-HHHHH
Confidence 9999999999999999998876555555665554 4332221111 12678999998 4444444445 77887
Q ss_pred HHHH
Q 009657 406 EFLA 409 (529)
Q Consensus 406 ~~la 409 (529)
+...
T Consensus 157 ~~~n 160 (192)
T 2x5n_A 157 DAAN 160 (192)
T ss_dssp HHHC
T ss_pred Hhcc
Confidence 7765
No 24
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=104.88 Aligned_cols=55 Identities=33% Similarity=0.716 Sum_probs=45.5
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCCcC
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRN 118 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~~ 118 (529)
....|+||++.|. ....+..++|+|.||..||..|++.+. +||+||+.+.++...
T Consensus 14 ~~~~C~IC~~~~~------~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 14 LHELCAVCLEDFK------PRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLAQL 68 (74)
T ss_dssp CSCBCSSSCCBCC------SSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSCCSC
T ss_pred CCCCCcCCCcccC------CCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccccccc
Confidence 3568999999996 345566778999999999999999755 999999998765543
No 25
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.32 E-value=4.9e-12 Score=145.52 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=93.5
Q ss_pred ccceeeeeccc-------cCCCceeEEEE----ecCCcc------hHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCeEE
Q 009657 249 NRRAAYLSVKL-------AHQPATDLVLV----ASPNGP------HLRLLKQSMALVVFSLR--PNDRLAIVTYSSAAAR 309 (529)
Q Consensus 249 ~~~~~~~~v~~-------~~r~P~DLV~V----GSM~G~------kL~l~K~Am~~vi~~L~--~~DrlsIVtFss~a~~ 309 (529)
..|.+.|.++. ..+.|+||||| |||.+. ||+.+|+|++.+++.|. ++|||+||+|++.+..
T Consensus 202 ~~~~v~L~v~g~~~~~~~~~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~ 281 (893)
T 2ww8_A 202 NQYGIELTVSGKTVYEQKDKSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFD 281 (893)
T ss_dssp TEEEEEEEEEBCEEEEESSTTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCB
T ss_pred CeeEEEEEecccccccccccCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcccc
Confidence 46666776664 25799999999 899986 48889999999999885 5999999999997632
Q ss_pred ------e---------------------------------ecCcccCHHhHHHHHHHHhc----------cccCCCCChH
Q 009657 310 ------V---------------------------------FPLKRMTSYGKRMALQVIDR----------LFYMGQADPI 340 (529)
Q Consensus 310 ------l---------------------------------~pl~~mt~~~k~~a~~~I~~----------L~a~GgTni~ 340 (529)
. +||+. +......++.+|.. |.++|||+++
T Consensus 282 ~~~~~v~~~~~~~~g~~~n~~~~w~~~~t~~t~~~~~~~~lpLT~-d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~ 360 (893)
T 2ww8_A 282 GTEFTVEKGVADKNGKRLNDSLFWNYDQTSFTTNTKDYSYLKLTN-DKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQ 360 (893)
T ss_dssp SCEEEEECCEECTTCCEECCCTTSCTTCCEEEEECCBCCEEEEEC-CHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccC-CHHHHHHHHHHHhhhccccccccccccCCCChHH
Confidence 1 12221 22344566677764 5678999999
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEccCCCCc
Q 009657 341 EGLKKGIKILEDRAHKNPQSCILHLSDTPTR 371 (529)
Q Consensus 341 ~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~ 371 (529)
.||+.|+++|++...++..+.|||||||.++
T Consensus 361 ~AL~~A~~lL~~~~~~~~~kvIILLTDG~pt 391 (893)
T 2ww8_A 361 KALMKADEILTQQARQNSQKVIFHITDGVPT 391 (893)
T ss_dssp HHHHHHHHHHHHHSCSSSEEEEEEEESSCCS
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEEcCCCCC
Confidence 9999999999865445667789999999754
No 26
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=103.17 Aligned_cols=52 Identities=31% Similarity=0.758 Sum_probs=44.1
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
.....|+||++.|. .+..+..++|+|.||..||..|++.+. +||+||+.|..
T Consensus 12 ~~~~~C~IC~~~~~------~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILE------EGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCC------SSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCS
T ss_pred CCCCCCeeCCcccc------CCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccC
Confidence 34578999999986 445677889999999999999999755 89999999764
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=2.5e-12 Score=104.47 Aligned_cols=52 Identities=29% Similarity=0.690 Sum_probs=43.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccC
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQL 115 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~ 115 (529)
....|+||++.|. ....+..++|+|.||..||..|++... +||+||+.+..-
T Consensus 14 ~~~~C~IC~~~~~------~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYA------LGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCC------TTSCEEECTTSCEEETTTTHHHHTTTC-SCTTTCCCCCCS
T ss_pred CCCCCeeCCcccc------CCCCEEEeCCCCeecHHHHHHHHHcCC-cCcCcCCccCCc
Confidence 4569999999996 445667789999999999999998755 999999997653
No 28
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=105.02 Aligned_cols=51 Identities=31% Similarity=0.773 Sum_probs=43.1
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.....|+||++.|. .+..+..++|+|.||..||..|++... +||+||+.+.
T Consensus 21 ~~~~~C~IC~~~~~------~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE------SRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECC------BTCEEEEETTTEEEETTHHHHHHHHCS-SCTTTCCCCC
T ss_pred CCCCCCeECCcccC------CCCeEEEECCCCHhHHHHHHHHHHcCC-cCcCcCCcCC
Confidence 34578999999996 445677889999999999999998755 8999998764
No 29
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-12 Score=106.78 Aligned_cols=57 Identities=26% Similarity=0.687 Sum_probs=42.2
Q ss_pred ccccccccccccccC------CCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYS------SGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~------~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|+||+++|... .-.++...+.+.+|+|.||..||..|++.++ +||+||+.|..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcch
Confidence 356799999888521 0012334556667999999999999999866 99999998753
No 30
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.28 E-value=1.9e-12 Score=112.41 Aligned_cols=56 Identities=32% Similarity=0.647 Sum_probs=44.4
Q ss_pred ccccccccccccccC---------CCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYS---------SGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~---------~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
....|+||++.|... ...+++..+..++|+|.||..||..|++.+. +||+||+.|.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-BCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-cCcCCCCcce
Confidence 467899999999732 0133445688899999999999999999855 9999999985
No 31
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.25 E-value=2.6e-12 Score=97.32 Aligned_cols=49 Identities=35% Similarity=0.731 Sum_probs=40.2
Q ss_pred ccccccccccccccCCCCCCCcceEeCC-CCCcccHhHHHHHhhCCCCccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQ-CSHAFHFACISSNVRHGSVTCPICRAHW 112 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~-C~H~FH~~CI~~Wl~~~~~~CPlCR~~~ 112 (529)
....|+||++.|. .+..+..++ |+|.||..||..|++... +||+||+.+
T Consensus 4 ~~~~C~IC~~~~~------~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELE------DGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCC------TTSCCEECSSSCCEECTTHHHHTTTTCC-SCSSSCCCS
T ss_pred CCCcCccCCcccc------CCCceEECCCCCCcccHHHHHHHHHcCC-cCcCCCCEe
Confidence 3568999999996 334455565 999999999999998755 999999875
No 32
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.25 E-value=3.1e-12 Score=107.63 Aligned_cols=51 Identities=29% Similarity=0.720 Sum_probs=43.4
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.....|+||++.|. .+..+..++|+|.||..||..|++... +||+||+.|.
T Consensus 38 ~~~~~C~IC~~~~~------~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYV------KGDVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECC------TTCEEEEETTTEEEEHHHHHHHHTTTC-BCTTTCCBSS
T ss_pred CCCCCCcccChhhc------CCCcEEecCCCChHHHHHHHHHHHcCC-cCcCcCccCC
Confidence 34678999999996 456677788999999999999998755 9999999864
No 33
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.24 E-value=5e-12 Score=110.08 Aligned_cols=59 Identities=34% Similarity=0.698 Sum_probs=43.4
Q ss_pred ccccccccccccccCCC---------CCCCcceEeCCCCCcccHhHHHHHhh----CCCCcccccccccccC
Q 009657 57 AKNLCAICLEALSYSSG---------GSPGQAIFTAQCSHAFHFACISSNVR----HGSVTCPICRAHWTQL 115 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~---------~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~~~~CPlCR~~~~~~ 115 (529)
.+..|+||++.|..+.. ......+..++|+|.||..||..|+. ....+||+||+.|...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 35689999999963210 01113455889999999999999995 2345999999998754
No 34
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.22 E-value=6.6e-12 Score=147.65 Aligned_cols=130 Identities=12% Similarity=0.199 Sum_probs=102.8
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcc-ccCC
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSLRPN-DRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRL-FYMG 335 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~~~-DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L-~a~G 335 (529)
+.|+||||| |||.+.+++.+|+++..+++.|.+. +||+||+|++.++.++||+.. .++..++.+|+.| ..+|
T Consensus 128 ~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~--~~~~~l~~ai~~i~~~gG 205 (1095)
T 3k6s_A 128 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEF--RRSSNPLSLLASVHQLQG 205 (1095)
T ss_dssp CCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHH--HSCSCGGGGTTTCCCCCS
T ss_pred CCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCccc--CCHHHHHHHHhhhhcccC
Confidence 458999999 8999999999999999999999876 899999999999999999753 3455667788888 4689
Q ss_pred CCChHHHHHHHHHHHHhc---cCCCCCCEEEEccCCCCcc-hh---h-h--cccccccEEEEeeeeec
Q 009657 336 QADPIEGLKKGIKILEDR---AHKNPQSCILHLSDTPTRT-YH---A-I--NLQVPFPVHRFHVGFGF 393 (529)
Q Consensus 336 gTni~~gL~~A~~~l~~~---~~~n~v~~IILLTDG~~~~-~~---~-~--~~~~~v~I~TfgvGfGf 393 (529)
+|+++.||+.|++.+... ..++..+.|||||||+.+. .. . + ....+|.|++||||-.+
T Consensus 206 ~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~~ 273 (1095)
T 3k6s_A 206 FTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAF 273 (1095)
T ss_dssp CBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSGG
T ss_pred CChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHHCCCEEEEEeccccc
Confidence 999999999999866321 2245567899999998852 11 1 1 12568999999776544
No 35
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.20 E-value=1.5e-12 Score=115.04 Aligned_cols=56 Identities=30% Similarity=0.634 Sum_probs=1.0
Q ss_pred ccccccccccccccCC---------CCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSS---------GGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~---------~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
..+.|+||+++|...- ..++...+.+++|+|.||..||..|++... +||+||+.|.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCeee
Confidence 4579999999997310 013445677789999999999999999855 9999999985
No 36
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.18 E-value=1.1e-11 Score=93.64 Aligned_cols=50 Identities=26% Similarity=0.675 Sum_probs=42.1
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHW 112 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~ 112 (529)
....|+||++.+. ..+..+..++|+|.||..||..|++.+. +||+||+.+
T Consensus 4 ~~~~C~IC~~~~~-----~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIH-----TSRVVAHVLPCGHLLHRTCYEEMLKEGY-RCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCC-----TTTSCEEECTTSCEEETTHHHHHHHHTC-CCTTSCCSS
T ss_pred CCCcCcccChhhc-----CCCcCeEecCCCCcccHHHHHHHHHcCC-cCCCCCCcC
Confidence 3568999999985 1245678899999999999999999764 899999875
No 37
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.6e-11 Score=95.56 Aligned_cols=54 Identities=28% Similarity=0.732 Sum_probs=42.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
....|+||++.+..... .+..+..++|||.||..||..|++... +||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQ--NGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTT--TTCCEEECSSSCEEEHHHHHHHHHHCS-SCTTTCCCCC
T ss_pred CCCCCcccCcccccccc--ccCCeEeCCCCChhcHHHHHHHHHcCC-CCCCCCCccC
Confidence 35689999999973211 234567889999999999999998744 8999998864
No 38
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=7.4e-11 Score=94.52 Aligned_cols=50 Identities=30% Similarity=0.569 Sum_probs=41.5
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
.....|+||++.|. +++.+.+|||.||..||..|++... .||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~--------~p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLI--------DATTITECLHTFCKSCIVRHFYYSN-RCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCS--------SCEECSSSCCEECHHHHHHHHHHCS-SCTTTCCCCCS
T ss_pred CCCCCCCCCChHHH--------CcCEECCCCCHHHHHHHHHHHHcCC-cCCCcCcccCc
Confidence 34678999999985 4556669999999999999998744 89999998754
No 39
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.10 E-value=3.1e-11 Score=95.27 Aligned_cols=49 Identities=35% Similarity=0.797 Sum_probs=41.6
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|+||++.+. .+...++|||.||..||..|++.+. +||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~--------~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS--------NYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC--------SCEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCC
T ss_pred CCCCCeeCCcccc--------CCcEecCCCCeeHHHHHHHHHhCcC-cCcCCChhhHh
Confidence 3568999999985 4457889999999999999998755 89999998754
No 40
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.08 E-value=4e-11 Score=95.22 Aligned_cols=54 Identities=28% Similarity=0.739 Sum_probs=43.5
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
....|+||++.+..+. ..+..+..++|||.||..||..|++... +||+||+.+.
T Consensus 9 ~~~~C~IC~~~~~~~~--~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~ 62 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIV--QNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKIN 62 (71)
T ss_dssp TCCBCTTTCCBHHHHH--TTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCC
T ss_pred CCCCCcccChhhhccc--cccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCccC
Confidence 4568999999996221 1235668899999999999999998755 9999999875
No 41
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.2e-11 Score=95.15 Aligned_cols=51 Identities=25% Similarity=0.623 Sum_probs=41.1
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCCc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPR 117 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~ 117 (529)
....|+||++.+. .+ ..++|+|.||..||..|+..+. .||+||+.+..-..
T Consensus 14 ~~~~C~IC~~~~~--------~~-~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCV--------HP-VSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCS--------SE-EEETTTEEEEHHHHHHCTTCSS-BCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccC--------CC-EEccCCCHHHHHHHHHHHHCCC-cCcCcCchhCHhhc
Confidence 3568999999985 33 4458999999999999998764 99999998765333
No 42
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=95.82 Aligned_cols=51 Identities=20% Similarity=0.602 Sum_probs=40.8
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCC-----CcccHhHHHHHhhCC-CCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCS-----HAFHFACISSNVRHG-SVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~-----H~FH~~CI~~Wl~~~-~~~CPlCR~~~~~ 114 (529)
....|.||++++. ++..+ .++|. |.||..||..|+... ..+||+||+.|.-
T Consensus 14 ~~~~C~IC~~~~~------~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGD------DESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCC------SSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCcccc------CCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3568999999985 33444 57896 999999999999853 3589999999753
No 43
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.05 E-value=5.4e-11 Score=92.33 Aligned_cols=54 Identities=28% Similarity=0.735 Sum_probs=42.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|+||++.+..+. ..+..+..++|||.||..||..|++... +||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~--~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIV--QNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHH--HTTCCEEEETTSCEEEHHHHHHHHHHCS-BCTTTCCBCTT
T ss_pred CCCCCccChhhhCcc--ccCCCEEeCCCCCchhHHHHHHHHHcCC-CCCCCCccCCc
Confidence 568999999996211 0234557789999999999999998744 99999998653
No 44
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=2e-10 Score=93.34 Aligned_cols=51 Identities=27% Similarity=0.741 Sum_probs=40.7
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC-CCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG-SVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~-~~~CPlCR~~~~~ 114 (529)
.....|+||.+.+. .+. .-..|+|.||.+||.+|++.. +.+||+||+.|..
T Consensus 13 ~~i~~C~IC~~~i~------~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLI------QGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCS------SSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcc------cCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34579999999996 222 223899999999999999865 2599999999874
No 45
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.7e-10 Score=89.61 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=39.7
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.....|+||++.+. .++ .++|||.||..||..|+..+...||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~--------~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--------SPK-QTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEES--------SCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhc--------Cee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 34578999999985 222 36899999999999999755568999999864
No 46
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=4.1e-10 Score=89.93 Aligned_cols=49 Identities=31% Similarity=0.797 Sum_probs=39.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh--CCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR--HGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~--~~~~~CPlCR~~~~ 113 (529)
.....|+||++.+. .+ ..++|||.||..||..|++ .+...||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~~--------~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ--------KP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS--------SE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC--------Ce-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34679999999985 33 4459999999999999997 24568999999864
No 47
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.3e-10 Score=92.33 Aligned_cols=46 Identities=30% Similarity=0.757 Sum_probs=39.3
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
....|+||++.+. . ..++|+|.||..||..|+... .+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~--------~--~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRA--------D--LILPCAHSFCQKCIDKWSDRH-RNCPICRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCC--------S--EEETTTEEECHHHHHHSSCCC-SSCHHHHHCTT
T ss_pred CCCCCeeCCcCcc--------C--cccCCCCcccHHHHHHHHHCc-CcCCCcCCccc
Confidence 4578999999985 2 677899999999999999864 49999999865
No 48
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=98.98 E-value=2e-09 Score=118.37 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=90.0
Q ss_pred eeEEEE----ecCCc------chHHHHHHHHHHHHHh---cCCCCeEEEEEeCCCeE--------------EeecCcccC
Q 009657 265 TDLVLV----ASPNG------PHLRLLKQSMALVVFS---LRPNDRLAIVTYSSAAA--------------RVFPLKRMT 317 (529)
Q Consensus 265 ~DLV~V----GSM~G------~kL~l~K~Am~~vi~~---L~~~DrlsIVtFss~a~--------------~l~pl~~mt 317 (529)
-++||+ +||.. ++|+.+|+++..++++ .+++|+++||.|++.+. ++.||+..+
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~~~ 87 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPD 87 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCCCC
Confidence 356666 79953 5999999999999994 79999999999998762 333554333
Q ss_pred HHhHHHHHHHHhc-cccC-CCCChHHHHHHHHHHHHhccCC--CCCCEEEEccCCCCcch-hh---h---cccccccEE-
Q 009657 318 SYGKRMALQVIDR-LFYM-GQADPIEGLKKGIKILEDRAHK--NPQSCILHLSDTPTRTY-HA---I---NLQVPFPVH- 385 (529)
Q Consensus 318 ~~~k~~a~~~I~~-L~a~-GgTni~~gL~~A~~~l~~~~~~--n~v~~IILLTDG~~~~~-~~---~---~~~~~v~I~- 385 (529)
. .....|+. |.++ ++|++++||..|+++|.++..+ ...++|||+|||..+.. .. + ....+|.|+
T Consensus 88 ~----~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~~gI~i~~ 163 (565)
T 1jey_B 88 F----DLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQF 163 (565)
T ss_dssp H----HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEE
T ss_pred H----HHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEE
Confidence 2 23345665 7665 7999999999999999887332 34579999999987631 11 1 126789999
Q ss_pred EEeeeee
Q 009657 386 RFHVGFG 392 (529)
Q Consensus 386 TfgvGfG 392 (529)
++|+|++
T Consensus 164 vig~g~~ 170 (565)
T 1jey_B 164 FLPFSLG 170 (565)
T ss_dssp EESSCCC
T ss_pred EeccCCC
Confidence 8855544
No 49
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=4.2e-10 Score=92.88 Aligned_cols=52 Identities=21% Similarity=0.485 Sum_probs=41.6
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC--CCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG--SVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~--~~~CPlCR~~~~ 113 (529)
....|+||++.|. . .......++|||.||..||..|++.. ...||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~----~-~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFT----E-EQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCC----T-TSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCCccCCcccc----c-cCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3568999999996 1 12336777999999999999999864 468999999864
No 50
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.97 E-value=2.3e-10 Score=97.76 Aligned_cols=49 Identities=33% Similarity=0.657 Sum_probs=41.6
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
....|+||++.|. .++..++|||.||..||..|+......||+||+.+.
T Consensus 21 ~~~~C~IC~~~~~--------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLR--------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCS--------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCcccc--------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 4578999999985 455558999999999999999976459999999874
No 51
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.96 E-value=2.1e-10 Score=103.55 Aligned_cols=47 Identities=34% Similarity=0.721 Sum_probs=39.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|+||++.|. .+ ++++|||.||..||..|+.... +||+||+.+..
T Consensus 53 ~~~C~iC~~~~~--------~~-~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI--------EA-VTLNCAHSFCSYCINEWMKRKI-ECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS--------SE-EEETTSCEEEHHHHHHHTTTCS-BCTTTCCBCCC
T ss_pred cCCCcccCcccC--------Cc-eECCCCCCccHHHHHHHHHcCC-cCCCCCCcCCC
Confidence 357999999985 33 4578999999999999998755 89999998754
No 52
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=6.5e-10 Score=90.92 Aligned_cols=47 Identities=26% Similarity=0.526 Sum_probs=39.3
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
....|+||++.|. .+ ++++|||.||..||..|+.... .||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~--------~p-~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ--------NP-VVTKCRHYFCESCALEHFRATP-RCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC--------SE-EECTTSCEEEHHHHHHHHHHCS-BCSSSCCBCC
T ss_pred CCCCCcCCCchhc--------Ce-eEccCCCHhHHHHHHHHHHCCC-cCCCcCcccc
Confidence 3568999999985 33 4579999999999999998644 8999999864
No 53
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.93 E-value=7.6e-10 Score=89.18 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=38.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCC-CCCcccHhHHHHHhhCC-CCccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQ-CSHAFHFACISSNVRHG-SVTCPICRAHW 112 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~-C~H~FH~~CI~~Wl~~~-~~~CPlCR~~~ 112 (529)
.....|+||++.|. .++. ++ |||.||..||..|++.. ...||+||+.+
T Consensus 13 ~~~~~C~IC~~~~~--------~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIMT--------DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCCT--------TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCCcCCChHHh--------CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 34678999999985 3444 66 99999999999999843 35899999964
No 54
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=4.7e-10 Score=87.90 Aligned_cols=51 Identities=20% Similarity=0.523 Sum_probs=40.5
Q ss_pred ccccccccc-ccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 58 KNLCAICLE-ALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~-~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
+..|+||++ .+. ........++|||.||..||..|+..+...||+||+.+.
T Consensus 3 ~~~C~IC~~~~~~-----~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYR-----NPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHH-----CSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccC-----CCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 468999999 675 122334668999999999999998766668999998764
No 55
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.93 E-value=6.1e-10 Score=90.24 Aligned_cols=48 Identities=19% Similarity=0.341 Sum_probs=40.3
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
....|+||++.|. ++ ++++|||.||..||..|+..+..+||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~--------~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMK--------DP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCS--------SE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCcccccc--------CC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 4678999999985 34 345899999999999999976669999998864
No 56
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.91 E-value=5.8e-10 Score=103.44 Aligned_cols=49 Identities=35% Similarity=0.842 Sum_probs=42.1
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
....|+||++.|. .++.+++|||.||..||..|+..+...||+||..+.
T Consensus 53 ~~~~C~IC~~~~~--------~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLK--------NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCS--------SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhh--------CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3468999999985 466667999999999999999976669999999864
No 57
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.91 E-value=6.4e-10 Score=94.44 Aligned_cols=49 Identities=31% Similarity=0.634 Sum_probs=40.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|+||++.|. .++.+.+|||.||..||..|+..+. .||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~--------~p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN--------IAMIIPQCSHNYCSLCIRKFLSYKT-QCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS--------SEEECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCG
T ss_pred CCCCcccCChhhC--------CcCEECCCCCHhhHHHHHHHHHCCC-CCCCCCCcCCh
Confidence 3568999999985 4555569999999999999999754 99999998653
No 58
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.89 E-value=1e-09 Score=97.04 Aligned_cols=48 Identities=25% Similarity=0.589 Sum_probs=40.1
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|+||++.|. .+ ++++|||.||..||..|+..+...||+||+.+..
T Consensus 52 ~~~C~IC~~~~~--------~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF--------RP-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS--------SE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc--------Cc-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 468999999985 33 4569999999999999998666699999998753
No 59
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.87 E-value=1.1e-09 Score=94.42 Aligned_cols=49 Identities=24% Similarity=0.594 Sum_probs=41.4
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|+||++.|. +++.+.+|||.||..||..|+..+. .||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~--------~p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--------DATTIIECLHSFCKTCIVRYLETSK-YCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS--------SEEEETTTCCEEEHHHHHHHHTSCS-BCTTTCCBSCS
T ss_pred CcCCCccCChHHh--------CcCEeCCCCChhhHHHHHHHHHhCC-cCcCCCccccc
Confidence 4578999999985 5666669999999999999998754 99999998653
No 60
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2.2e-09 Score=83.44 Aligned_cols=44 Identities=34% Similarity=0.893 Sum_probs=35.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC--CCCccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH--GSVTCPIC 108 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~--~~~~CPlC 108 (529)
.....|+||++.+. ++ ..++|||.||..||..|++. +...||+|
T Consensus 18 ~~~~~C~IC~~~~~--------~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ--------KP-VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS--------SC-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC--------Ce-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34678999999985 33 34599999999999999983 34589998
No 61
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.85 E-value=2.3e-09 Score=87.45 Aligned_cols=48 Identities=40% Similarity=0.924 Sum_probs=39.5
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC-----CCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH-----GSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~-----~~~~CPlCR~~~~ 113 (529)
....|+||++.+. .++ .++|+|.||..||..|+.. +...||+||+.+.
T Consensus 18 ~~~~C~IC~~~~~--------~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLK--------EPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCS--------SCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhC--------cce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4568999999985 333 5789999999999999986 2568999999864
No 62
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.6e-09 Score=81.28 Aligned_cols=43 Identities=33% Similarity=0.815 Sum_probs=34.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC--CCCccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH--GSVTCPIC 108 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~--~~~~CPlC 108 (529)
....|+||++.+. ++ +.++|||.||..||..|+.. +...||+|
T Consensus 14 ~~~~C~IC~~~~~--------~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK--------EP-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS--------SC-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC--------cc-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4568999999986 22 34689999999999999764 45689998
No 63
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.82 E-value=9.6e-10 Score=88.99 Aligned_cols=48 Identities=29% Similarity=0.814 Sum_probs=39.4
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC------CCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG------SVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~------~~~CPlCR~~~~ 113 (529)
....|+||++.|. .+ .+++|||.||..||..|+... ...||+||..+.
T Consensus 11 ~~~~C~IC~~~~~--------~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLELLT--------EP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEECS--------SC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCcccC--------Ce-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 4578999999985 22 346899999999999999863 568999999865
No 64
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.79 E-value=5.1e-09 Score=85.77 Aligned_cols=55 Identities=22% Similarity=0.478 Sum_probs=41.3
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCC
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLP 116 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p 116 (529)
...+|+||++.+. . .......++|||.||..|+..|+..+...||+||+.+..-+
T Consensus 10 ~~~~CpICle~~~----~-~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLE----I-DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCC----T-TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCc----c-ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3568999999884 1 11233334699999999999998766678999999876533
No 65
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=4.9e-09 Score=85.50 Aligned_cols=48 Identities=38% Similarity=0.960 Sum_probs=39.2
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC-----CCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH-----GSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~-----~~~~CPlCR~~~~ 113 (529)
....|+||++.+. .+ ..++|||.||..||..|+.. +...||+||..+.
T Consensus 18 ~~~~C~IC~~~~~--------~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLT--------QP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCS--------SC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccC--------Cc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4568999999985 22 34689999999999999975 3458999999875
No 66
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.78 E-value=2.2e-09 Score=94.80 Aligned_cols=54 Identities=28% Similarity=0.739 Sum_probs=42.8
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
+...|+||++.|..+. ..+..+..++|||.||..||..|++... +||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~~~~--~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~ 59 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIV--QNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKIN 59 (133)
T ss_dssp CSCBCTTTCCBHHHHH--HTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCT
T ss_pred CCCCCcccChhhhCcc--ccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCc
Confidence 4568999999996210 0134557889999999999999998765 9999999864
No 67
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.78 E-value=3.8e-09 Score=97.01 Aligned_cols=48 Identities=27% Similarity=0.638 Sum_probs=40.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|+||++.|. .+ ++++|||.||..||..|+..+...||+||..+..
T Consensus 78 ~~~C~IC~~~~~--------~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVY--------QP-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCS--------SE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhc--------CC-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 457999999985 33 4479999999999999999766689999998754
No 68
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.76 E-value=8.5e-09 Score=112.74 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=73.3
Q ss_pred CCceeEEEE----ecCCc----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcccc
Q 009657 262 QPATDLVLV----ASPNG----PHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRLFY 333 (529)
Q Consensus 262 r~P~DLV~V----GSM~G----~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L~a 333 (529)
..+.++++| |||.+ .+|...+.|+...+..+.++|+++||+|++. ...+|++.- .+...+.+.+..+ +
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~-~~~~~~t~~--~~l~~~l~~l~~~-~ 441 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDE-MLPCPITVN--MLLHEVVEKMSDI-T 441 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSS-EECCSCCTT--SCHHHHHHHHTTC-C
T ss_pred CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCC-ceEcCCCCc--ccHHHHHHHHhcC-C
Confidence 567888887 89975 3566655545555666779999999999984 344566532 2355556666654 6
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcc
Q 009657 334 MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRT 372 (529)
Q Consensus 334 ~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~ 372 (529)
+|||+|+.||..|++. ..+...|||+|||.++.
T Consensus 442 ~GgT~i~~aL~~a~~~------~~~~~~iIliTDg~~~~ 474 (538)
T 1yvr_A 442 MGSTDCALPMLWAQKT------NTAADIFIVFTDCETNV 474 (538)
T ss_dssp CSCCCTTHHHHHHHHT------TCCCSEEEEEECCCCCS
T ss_pred CCCCcHHHHHHHHHhc------cCCCCEEEEEcCCCCCC
Confidence 8999999999999875 34567899999998764
No 69
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.76 E-value=4.5e-09 Score=87.75 Aligned_cols=48 Identities=25% Similarity=0.650 Sum_probs=38.7
Q ss_pred CccccccccccccccCCCCCCCcceEeCC-CCCcccHhHHHHHhhC-CCCccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQ-CSHAFHFACISSNVRH-GSVTCPICRAHW 112 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~-C~H~FH~~CI~~Wl~~-~~~~CPlCR~~~ 112 (529)
.....|+||++.|. +++ +++ |||.||..||..|+.. +...||+||..+
T Consensus 11 ~~~~~C~IC~~~~~--------~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMT--------DAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECS--------SCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhc--------Cce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34578999999985 344 556 9999999999999963 446899999875
No 70
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.75 E-value=1.9e-09 Score=94.04 Aligned_cols=48 Identities=33% Similarity=0.785 Sum_probs=40.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|+||++.|. .+ ++++|||.||..||..|+..+...||+||..+..
T Consensus 15 ~~~C~iC~~~~~--------~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV--------EP-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS--------SC-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC--------ce-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 568999999985 33 4458999999999999998766799999998653
No 71
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.73 E-value=1e-08 Score=100.97 Aligned_cols=86 Identities=14% Similarity=0.235 Sum_probs=72.6
Q ss_pred CCceeEEEE----ecCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCe---EEee-cCcccCHHhHHHHHHHHhc
Q 009657 262 QPATDLVLV----ASPNGPHLRLLKQSMALVVFSLR---PNDRLAIVTYSSAA---ARVF-PLKRMTSYGKRMALQVIDR 330 (529)
Q Consensus 262 r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L~---~~DrlsIVtFss~a---~~l~-pl~~mt~~~k~~a~~~I~~ 330 (529)
..|+|+||| |||. .||+.+|.++..++..|. ..|+|+||+|++.. ..++ |++.-. .+...+..
T Consensus 132 ~~~~~vvfLVDtSgSM~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~-----~~~~~l~~ 205 (242)
T 3rag_A 132 EVALHLVVCLDTSASMR-DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV-----NVAALEAE 205 (242)
T ss_dssp HSCEEEEEEEECSGGGT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-----CHHHHHHH
T ss_pred cCCCCEEEEEECcccHH-HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-----HHHHHHhh
Confidence 378999998 8998 599999999999999875 57999999999975 4444 776522 56778899
Q ss_pred cccCCCCChHHHHHHHHHHHHhc
Q 009657 331 LFYMGQADPIEGLKKGIKILEDR 353 (529)
Q Consensus 331 L~a~GgTni~~gL~~A~~~l~~~ 353 (529)
|.++|+|.++.||.+|++++++.
T Consensus 206 L~agG~Tplg~AL~~A~~~~~~~ 228 (242)
T 3rag_A 206 LVARGGTPTGPAIDHAADLLLSH 228 (242)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999998653
No 72
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=6.2e-09 Score=89.77 Aligned_cols=47 Identities=28% Similarity=0.704 Sum_probs=38.1
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC--CCcccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG--SVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~--~~~CPlCR~~~~ 113 (529)
...|+||++.+. .+ ..++|||.||..||..|+... ...||+||..+.
T Consensus 21 ~~~C~IC~~~~~--------~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIK--------EP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCS--------SC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhc--------Ce-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 468999999985 22 346899999999999999853 258999998765
No 73
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.69 E-value=3.2e-09 Score=93.70 Aligned_cols=55 Identities=27% Similarity=0.732 Sum_probs=43.2
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.....|+||++.+.... ..+..+..++|||.||..||..|++... +||+||+.+.
T Consensus 70 ~~~~~C~iC~~~~~~~~--~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIV--QNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHH--HTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCC
T ss_pred CCCCCCCCCCCcccccc--ccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCC
Confidence 44678999999996211 1134557889999999999999999755 9999999864
No 74
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.68 E-value=7.6e-09 Score=94.02 Aligned_cols=48 Identities=33% Similarity=0.717 Sum_probs=40.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHW 112 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~ 112 (529)
.....|+||++.|. .+ +.++|||.||..||..|+..+...||+||...
T Consensus 29 ~~~~~C~IC~~~~~--------~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLR--------RP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCS--------SE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhc--------Cc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45679999999985 44 44699999999999999987666899999874
No 75
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.67 E-value=8.3e-09 Score=90.50 Aligned_cols=50 Identities=34% Similarity=0.680 Sum_probs=40.7
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
.....|+||++.+. .+ +.++|||.||..||..|+..+..+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~--------~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALR--------EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCS--------SE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhc--------Ce-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34578999999985 33 4468999999999999998655589999988653
No 76
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=98.66 E-value=6.2e-08 Score=107.50 Aligned_cols=126 Identities=13% Similarity=0.023 Sum_probs=91.0
Q ss_pred EEEE----ecCCc-------chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCe----------EEeecCcccCHHhHH
Q 009657 267 LVLV----ASPNG-------PHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAA----------ARVFPLKRMTSYGKR 322 (529)
Q Consensus 267 LV~V----GSM~G-------~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a----------~~l~pl~~mt~~~k~ 322 (529)
+||+ +||.. ++|+.+|+++..++++. +++|+++||.|++.+ .++.||...+....+
T Consensus 38 ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ik 117 (609)
T 1jey_A 38 LIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRIL 117 (609)
T ss_dssp EEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHHHH
T ss_pred EEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHHHH
Confidence 6666 58853 48999999999999874 799999999999988 466788776655444
Q ss_pred HHHHHHh--------c-cccCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchh------hh------ccccc
Q 009657 323 MALQVID--------R-LFYMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYH------AI------NLQVP 381 (529)
Q Consensus 323 ~a~~~I~--------~-L~a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~------~~------~~~~~ 381 (529)
.+...++ . +..+++|++++||..|.+++.+...+....+|||+|||..+... .. ....|
T Consensus 118 ~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~~g 197 (609)
T 1jey_A 118 ELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTG 197 (609)
T ss_dssp HHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHhcC
Confidence 4443332 1 11257899999999999999875333346799999999764321 11 12678
Q ss_pred ccEEEEeeeee
Q 009657 382 FPVHRFHVGFG 392 (529)
Q Consensus 382 v~I~TfgvGfG 392 (529)
|.|++||+|+.
T Consensus 198 I~i~~igig~~ 208 (609)
T 1jey_A 198 IFLDLMHLKKP 208 (609)
T ss_dssp EEEEEEEBCCT
T ss_pred cEEEEEecCCC
Confidence 99999977644
No 77
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.65 E-value=1.3e-08 Score=88.81 Aligned_cols=48 Identities=27% Similarity=0.568 Sum_probs=39.9
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|+||++.+. .++ .++|||.||..||..|+......||+||+.+..
T Consensus 23 ~~~C~IC~~~~~--------~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA--------DPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS--------SEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc--------CcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 568999999985 343 468999999999999998745589999998653
No 78
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.57 E-value=2.3e-08 Score=104.70 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=40.2
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|+||++.+. .+..++|||.||..||..|+......||+||+.+..
T Consensus 331 ~~~~C~ICle~~~---------~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDK---------DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBC---------CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCC---------CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3468999999884 245678999999999999998434589999998754
No 79
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.56 E-value=8e-08 Score=81.97 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=39.8
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCC-CcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCS-HAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~-H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.....|+||++-|. ++ ++++|| |.|+..||..|+... .+||+||..+.
T Consensus 20 p~~~~CpI~~~~m~--------dP-V~~~cG~htf~r~cI~~~l~~~-~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC--------DP-VVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCS--------SE-EECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCC
T ss_pred cHhcCCcCcccccc--------CC-eECCCCCeEECHHHHHHHHHhC-CCCCCCCCCCC
Confidence 44679999999995 44 456799 999999999999874 49999998754
No 80
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=1.9e-08 Score=88.02 Aligned_cols=46 Identities=24% Similarity=0.576 Sum_probs=38.3
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
....|+||++.|. .++.+.+|||.||..||..|+. ..||+||+.+.
T Consensus 21 ~~~~C~IC~~~~~--------~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILR--------EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCS--------SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred hCCCCCCCChHhh--------CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 3568999999985 4444548999999999999998 48999999863
No 81
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.53 E-value=2.8e-08 Score=78.07 Aligned_cols=49 Identities=22% Similarity=0.523 Sum_probs=39.4
Q ss_pred ccccccccccccccCCCCCCCcceE-eCCCCCc-ccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIF-TAQCSHA-FHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~-~~~C~H~-FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
.+..|.||++... +.++ .++|||. |+..|+..|.+.+. .||+||+++..
T Consensus 7 ~~~~C~IC~~~~~--------~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPK--------NGCIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCS--------CEEEEETTEEEEEECHHHHHHHHHTTC-CCTTTCCCCCE
T ss_pred CcCCCCcCCCCCC--------CEEEECCCCCChhhHHHHHHHHHHcCC-cCCCcCcchhc
Confidence 3568999999864 4444 3599999 89999999998755 89999998754
No 82
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.52 E-value=6.4e-08 Score=80.29 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=39.4
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.....|+||++-|. ++ ++++|||.|+..||..|+.. ..+||+||..+.
T Consensus 12 p~~~~CpI~~~~m~--------dP-V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT--------DP-VRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCS--------SE-EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred chheECcccCchhc--------CC-eECCCCCEECHHHHHHHHhc-CCCCCCCcCCCC
Confidence 34679999999995 44 45569999999999999985 459999998754
No 83
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.49 E-value=4.5e-08 Score=76.65 Aligned_cols=50 Identities=22% Similarity=0.540 Sum_probs=39.6
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCc-ccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHA-FHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~-FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|.||++... ...+...+|||. |+..|+..|.+.+. .||+||+++..
T Consensus 6 ~~~~C~IC~~~~~-------~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPR-------DGNIIHGRTGHLVTCFHCARRLKKAGA-SCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBS-------CEEEEETTEEEEEECHHHHHHHHHTTC-BCTTTCCBCCE
T ss_pred cCCCCcccCCcCC-------CeEEEecCCCCHhHHHHHHHHHHHhCC-cCCCcCchhhc
Confidence 4568999999864 123344699998 99999999998754 89999998654
No 84
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=6.8e-08 Score=95.61 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=39.5
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
....|+||++-|. +++ +++|||+||..||..|+..+..+||+||.++.
T Consensus 207 ~~~~c~i~~~~~~--------dPv-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMR--------EPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCS--------SEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHhc--------CCe-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 4568999999995 444 56699999999999999865557999998764
No 85
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.46 E-value=1.5e-07 Score=80.49 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=39.7
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.....|+||++-|. +++. ++|||.|+..||..|+.. ..+||+||..+.
T Consensus 27 p~~~~CpI~~~~m~--------dPV~-~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMT--------DPVR-LPSGTIMDRSIILRHLLN-SPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCS--------SEEE-ETTTEEEEHHHHHHHTTS-CSBCSSSCCBCC
T ss_pred cHhhCCcCccCccc--------CCeE-CCCCCEEchHHHHHHHHc-CCCCCCCCCCCC
Confidence 45679999999995 4554 459999999999999985 459999998754
No 86
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.41 E-value=6.7e-08 Score=77.91 Aligned_cols=44 Identities=27% Similarity=0.599 Sum_probs=36.1
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCc-ccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHA-FHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~-FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|.||++.+. . ...++|||. ||..|+..| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~--------~-~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI--------A-IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC--------C-EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC--------C-EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4568999999874 3 445689999 999999999 389999998654
No 87
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.39 E-value=7.4e-08 Score=73.44 Aligned_cols=43 Identities=26% Similarity=0.646 Sum_probs=35.1
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
...|+||++.|. . ...++|||.||..||..| ...||+||+.+.
T Consensus 6 ~~~C~IC~~~~~--------~-p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 6 FLRCQQCQAEAK--------C-PKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CSSCSSSCSSCB--------C-CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred CCCceEeCCccC--------C-eEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 568999999985 2 256789999999999885 347999999865
No 88
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=1.7e-07 Score=79.06 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=38.6
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC-----CCcccc--cccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG-----SVTCPI--CRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~-----~~~CPl--CR~~ 111 (529)
....|+||++-|. +++.+..|||.|+..||..|+..+ ..+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~--------dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMK--------KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCS--------SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhc--------CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3568999999996 566665799999999999999743 458999 9865
No 89
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.30 E-value=2.6e-07 Score=85.77 Aligned_cols=50 Identities=34% Similarity=0.699 Sum_probs=40.9
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
.....|+||++.|. .++ .++|||.||..||..|+..+..+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~--------~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALR--------EAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCS--------SEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhc--------CcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45679999999985 344 468999999999999998655589999988643
No 90
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.29 E-value=3.3e-07 Score=86.46 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=39.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.....|+||++-|. ++ ++++|||+|+..||..|+..+..+||+|+..+.
T Consensus 104 p~~f~CPI~~elm~--------DP-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFELMR--------EP-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSBCS--------SE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cHhhcccCccccCC--------CC-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 45678999999995 44 455899999999999999854338999998753
No 91
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1.9e-07 Score=75.33 Aligned_cols=44 Identities=30% Similarity=0.619 Sum_probs=35.0
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCc-ccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHA-FHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~-FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|.||++.+. ....++|||. ||..|+..+ ..||+||+.+..
T Consensus 24 ~~~~C~IC~~~~~---------~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI---------AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC---------CBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC---------CEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 4568999999874 2345789999 999999753 379999998754
No 92
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.21 E-value=2.4e-07 Score=94.83 Aligned_cols=53 Identities=21% Similarity=0.451 Sum_probs=38.4
Q ss_pred ccccccccccccccCCCCCCCcce---EeCCCCCcccHhHHHHHhhCCC----------Ccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAI---FTAQCSHAFHFACISSNVRHGS----------VTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~---~~~~C~H~FH~~CI~~Wl~~~~----------~~CPlCR~~~~ 113 (529)
....|+||++.+. .++.-+. ....|+|.||..|+.+|++... ..||.||+++.
T Consensus 307 ~~~ECaICys~~l----~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRL----DGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSC----TTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeec----CCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4569999999986 1111111 2357999999999999997311 36999999764
No 93
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.15 E-value=8e-07 Score=88.16 Aligned_cols=49 Identities=18% Similarity=0.460 Sum_probs=41.2
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC-CCCcccc--cccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH-GSVTCPI--CRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~-~~~~CPl--CR~~~~ 113 (529)
....|+||++-|. +++....|||.|+..||..|+.. +...||+ ||..+.
T Consensus 180 ~el~CPIcl~~f~--------DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYE--------APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCS--------SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCccc--------CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4568999999996 67776789999999999999975 3468999 998753
No 94
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.10 E-value=1e-06 Score=74.00 Aligned_cols=48 Identities=29% Similarity=0.644 Sum_probs=37.2
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC----C---CCcccc--cccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH----G---SVTCPI--CRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~----~---~~~CPl--CR~~ 111 (529)
..+|+||++.+. ....+...+|||.||..|+..|+.. + ...||. |+..
T Consensus 5 ~~~C~IC~~~~~------~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYP------VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCB------GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccc------cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 568999999985 2233444589999999999999862 2 358999 9986
No 95
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2.4e-06 Score=67.81 Aligned_cols=46 Identities=20% Similarity=0.534 Sum_probs=36.8
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCc-ccHhHHHHHhhCCCCcccccccccccC
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHA-FHFACISSNVRHGSVTCPICRAHWTQL 115 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~-FH~~CI~~Wl~~~~~~CPlCR~~~~~~ 115 (529)
.....|.||++.. ..+..++|+|. |+..|+.. ...||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~---------~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGT---------VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSC---------CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCC---------CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 3457899999976 34667899999 99999984 23799999987653
No 96
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.06 E-value=2.1e-06 Score=66.72 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=36.2
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCC--C---cccHhHHHHHhhC-CCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCS--H---AFHFACISSNVRH-GSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~--H---~FH~~CI~~Wl~~-~~~~CPlCR~~~~ 113 (529)
....|.||+++.. ..+ ..+|. | .||..|+..|+.. ++.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~--------~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--------NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--------CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC--------Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3568999999732 223 46754 5 9999999999974 4569999998864
No 97
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.02 E-value=1.3e-06 Score=71.43 Aligned_cols=44 Identities=25% Similarity=0.601 Sum_probs=36.0
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCc-ccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHA-FHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~-FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|.||++.+. ....++|||. |+..|+..|. .||+||+.+..
T Consensus 17 ~~~~C~IC~~~~~---------~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEI---------NSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBC---------CEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccC---------cEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 3568999999874 3456789999 9999999872 79999998765
No 98
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.01 E-value=8e-06 Score=89.24 Aligned_cols=117 Identities=10% Similarity=0.072 Sum_probs=75.9
Q ss_pred CCceeEEEE----ecCCc-c-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCcccCHHhHHHHHHHHhcc
Q 009657 262 QPATDLVLV----ASPNG-P-----HLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLKRMTSYGKRMALQVIDRL 331 (529)
Q Consensus 262 r~P~DLV~V----GSM~G-~-----kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~~mt~~~k~~a~~~I~~L 331 (529)
..+.+++++ |||.+ . |+..++.|+...+-.++.+|+++||+|++... .+|++. +..+.+.|+.|
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~-~~~~~~-----~~~l~~~l~~l 433 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFR-PLGITP-----RDTLESAMQKA 433 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEE-ECCCCT-----TCCHHHHHHHT
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcce-EcCCCc-----chhHHHHHHHH
Confidence 345666655 99976 2 46666666666666677899999999998543 335543 12234445554
Q ss_pred cc--CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcchh-----hhc-----ccccccEEEEeee
Q 009657 332 FY--MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTYH-----AIN-----LQVPFPVHRFHVG 390 (529)
Q Consensus 332 ~a--~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~~-----~~~-----~~~~v~I~TfgvG 390 (529)
.. +|||++..+|+.+.+. +.....|||+|||+.+... .+. ...++.|+++++|
T Consensus 434 ~~~~~ggTdi~~~l~~a~~~------~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~ 498 (535)
T 2nvo_A 434 QSVSFGGTDCAQPILWAAQE------RLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLT 498 (535)
T ss_dssp CCSSBCCCCTTHHHHHHHHT------TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETT
T ss_pred hhCCCCCccHHHHHHHHHHh------cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEecc
Confidence 43 6999999999877442 2346789999999875421 111 1346788888553
No 99
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.90 E-value=4.1e-06 Score=65.17 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=39.3
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
..|+||++-|. +++....|||.|...||.+|++.+. +||+++.++..
T Consensus 4 ~~CpIs~~~m~--------dPV~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR--------RPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS--------SEEEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCG
T ss_pred EEecCCCCCCC--------CCEEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCCCh
Confidence 57999999995 5555558999999999999998654 79999987643
No 100
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.89 E-value=2.9e-06 Score=87.86 Aligned_cols=44 Identities=25% Similarity=0.634 Sum_probs=36.2
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCc-ccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHA-FHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~-FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|+||++.+. . +..++|||. ||..|+..| ..||+||+.+..
T Consensus 294 ~~~~C~IC~~~~~--------~-~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV--------S-VVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC--------C-EEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC--------c-eEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3578999999884 3 445599999 999999998 379999998754
No 101
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=97.74 E-value=0.00016 Score=69.86 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=73.5
Q ss_pred CceeEEEE----ecCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCe-EEeecCcccCHHhHHHHHHHHhccccC
Q 009657 263 PATDLVLV----ASPNGPHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAA-ARVFPLKRMTSYGKRMALQVIDRLFYM 334 (529)
Q Consensus 263 ~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a-~~l~pl~~mt~~~k~~a~~~I~~L~a~ 334 (529)
-|+||+|| |||.+. |+.+|+....+++.| ..+=|++++.|-+.. +.++|++. +.....+.|+.+..+
T Consensus 2 ~pvDl~fl~D~S~SM~~d-i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~----d~~~F~~~v~~~~vs 76 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQGH-LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTA----DSSQFQRELRKQLVS 76 (212)
T ss_dssp CCEEEEEEEECCGGGTTT-HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEES----CHHHHHHHHHTCCCC
T ss_pred CceEEEEEEeCCCcchhH-HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCC----CHHHHHHHHhhcccc
Confidence 38999999 899764 888888888776655 567799999998873 44556653 577889999999888
Q ss_pred CCCC----hHHHHHHHHHHHHhccCCCCCCEEEEccCCCC
Q 009657 335 GQAD----PIEGLKKGIKILEDRAHKNPQSCILHLSDTPT 370 (529)
Q Consensus 335 GgTn----i~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~ 370 (529)
|+-+ ..+||..|+--.++-..++..+-|||+||+.+
T Consensus 77 g~~D~PE~g~dal~qa~~c~~~i~Wr~a~rllvl~TDa~~ 116 (212)
T 2iue_A 77 GKLATPKGQLDAVVQVAICLGEIGWRNGTRFLVLVTDNDF 116 (212)
T ss_dssp CCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEECSSCB
T ss_pred CCCCCCchHHHHHHHHHHhhhhcccCCccEEEEEECcCCc
Confidence 7643 44666666532222222336677999999965
No 102
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.72 E-value=2.4e-05 Score=77.03 Aligned_cols=50 Identities=26% Similarity=0.711 Sum_probs=39.2
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCC-CCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHG-SVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~-~~~CPlCR~~~~~ 114 (529)
....|.||.+-+. .| ..-..|+|.||.+|+..|++.+ +..||.|+..|..
T Consensus 179 ~i~~C~iC~~iv~------~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLI------QG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCS------SC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHh------CC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3678999999875 22 2233499999999999999853 4689999999854
No 103
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.69 E-value=2e-05 Score=66.89 Aligned_cols=49 Identities=20% Similarity=0.502 Sum_probs=40.9
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCC
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLP 116 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p 116 (529)
-|.+|--.+. .-....+|.|.|+..|+..|.+.+..+||+|+.++..+-
T Consensus 3 fC~~C~~Pi~--------iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK--------VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS--------EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE--------EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4788887775 566789999999999999999877779999999876543
No 104
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=97.41 E-value=0.012 Score=66.99 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=133.2
Q ss_pred CceeEEEE-ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEee---cC---------------------cccC
Q 009657 263 PATDLVLV-ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVF---PL---------------------KRMT 317 (529)
Q Consensus 263 ~P~DLV~V-GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~---pl---------------------~~mt 317 (529)
+|+=+.+| -|+...+|+.+|+++...++.|.++-+|+||+|++.++..- .+ ..++
T Consensus 132 pp~~vFvIDvS~~a~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~ 211 (769)
T 2nut_A 132 PLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLS 211 (769)
T ss_dssp CCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC--
T ss_pred CCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCC
Confidence 44444444 78888899999999999999999999999999999876621 00 0010
Q ss_pred --------------------------HHhHHHHHHHHhcccc---------CCCCChHHHHHHHHHHHHhccCCCCCCEE
Q 009657 318 --------------------------SYGKRMALQVIDRLFY---------MGQADPIEGLKKGIKILEDRAHKNPQSCI 362 (529)
Q Consensus 318 --------------------------~~~k~~a~~~I~~L~a---------~GgTni~~gL~~A~~~l~~~~~~n~v~~I 362 (529)
.+.+..+...|+.|.. ...+.++.||+.|+.+|+... ++...+|
T Consensus 212 d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~-~~~GGrI 290 (769)
T 2nut_A 212 KVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTF-PNTGARI 290 (769)
T ss_dssp -----------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHS-CSSCCEE
T ss_pred CcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcc-cCCCcEE
Confidence 1345566777888765 577899999999999998642 2445789
Q ss_pred EEccCCCCcch----------------------------------hhhc---ccccccEEEEeeeeeccC----------
Q 009657 363 LHLSDTPTRTY----------------------------------HAIN---LQVPFPVHRFHVGFGFGS---------- 395 (529)
Q Consensus 363 ILLTDG~~~~~----------------------------------~~~~---~~~~v~I~TfgvGfGfG~---------- 395 (529)
++++.|.++.+ +.+. ...++.|..|..+..+-.
T Consensus 291 ~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~ 370 (769)
T 2nut_A 291 MMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNL 370 (769)
T ss_dssp EEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHH
T ss_pred EEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhc
Confidence 99999865310 0010 145678888733222110
Q ss_pred C-------hhhHHHHHHHHHHhhhc-------eeeeeEEEEEee-----------C--------------------CceE
Q 009657 396 S-------NGFVMHEFEEFLATLLG-------GNVQEIQLRIGE-----------E--------------------ARII 430 (529)
Q Consensus 396 d-------~~~~~~~f~~~la~~l~-------~va~dv~l~i~~-----------~--------------------~~~v 430 (529)
. .++-...|.+.|...+. .++-++.++|.- . ....
T Consensus 371 TGG~~~~~~~F~~~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~ 450 (769)
T 2nut_A 371 TGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQW 450 (769)
T ss_dssp SSCCEEEESCSSSHHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEE
T ss_pred CCceEEEcCCCchhhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceE
Confidence 0 01222345555555554 366677777621 0 1257
Q ss_pred EcCCcCCCcEEEEEEEeCCe----------eeEEEEEEEecCCcceee
Q 009657 431 RLGELRGGEERRILLDLGEC----------EDVRVEYSYVEGGIDECI 468 (529)
Q Consensus 431 ~lGdL~age~r~~L~el~~~----------~~~~v~~~Y~dp~~~e~~ 468 (529)
.++-+-......+.+++.+. ..++..+.|....+...+
T Consensus 451 ~l~~~~~d~s~~v~f~~~~~~~~~l~~~~~~~~Q~a~lYt~~~G~rRi 498 (769)
T 2nut_A 451 KICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRI 498 (769)
T ss_dssp EEEEECTTCCEEEEEEEC----------CCEEEEEEEEEEETTSCEEE
T ss_pred EeecCCCCCEEEEEEEecCccccccCCCCeEEEEEEEEEECCCCCEEE
Confidence 77888888888888887421 346888999998777665
No 105
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=96.51 E-value=0.18 Score=57.69 Aligned_cols=197 Identities=12% Similarity=0.102 Sum_probs=125.0
Q ss_pred eEEEE--ecCCcc---hHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCeEEee--c-----------------------
Q 009657 266 DLVLV--ASPNGP---HLRLLKQSMALVVFSLRP---NDRLAIVTYSSAAARVF--P----------------------- 312 (529)
Q Consensus 266 DLV~V--GSM~G~---kL~l~K~Am~~vi~~L~~---~DrlsIVtFss~a~~l~--p----------------------- 312 (529)
-.||| -|+... -|+.+|+++...|+.|.+ .-+|+||+|++.++..- +
T Consensus 189 ~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~ 268 (810)
T 1pcx_A 189 TYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEP 268 (810)
T ss_dssp EEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC
T ss_pred EEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccccccc
Confidence 34444 465542 378999999999999976 46999999999876541 0
Q ss_pred --------CcccCHHhHHHHHHHHhcccc------CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcch-----
Q 009657 313 --------LKRMTSYGKRMALQVIDRLFY------MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTY----- 373 (529)
Q Consensus 313 --------l~~mt~~~k~~a~~~I~~L~a------~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~----- 373 (529)
|..+ .+.+..+...++.|.. .+.+.++.||+.|+.+|+. ...+||+++.|.++.+
T Consensus 269 f~P~~~~~Lv~l-~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~-----~GGrI~~F~sg~pt~GpG~l~ 342 (810)
T 1pcx_A 269 FLPRPNSMVVSL-KACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGIGKLQ 342 (810)
T ss_dssp -----TTTSEET-TTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSSTTCCC
T ss_pred cCCCcccccccH-HHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh-----cCCEEEEEecCCCCCCCCccc
Confidence 0011 1235555566665543 6788999999999999974 2368999999965410
Q ss_pred -------------------------hhhc---ccccccEEEEeeeeeccC----------Ch-------hh------HHH
Q 009657 374 -------------------------HAIN---LQVPFPVHRFHVGFGFGS----------SN-------GF------VMH 402 (529)
Q Consensus 374 -------------------------~~~~---~~~~v~I~TfgvGfGfG~----------d~-------~~------~~~ 402 (529)
+.+. ...++.|..|..+..+-. .+ +| -..
T Consensus 343 ~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~ 422 (810)
T 1pcx_A 343 RRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIV 422 (810)
T ss_dssp C--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHH
T ss_pred ccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHH
Confidence 1110 144677777733222110 00 11 011
Q ss_pred HHHHHHHhhhc-eeeeeEEEEEee----------------CCceEEcCCcCCCcEEEEEEEeC-----CeeeEEEEEEEe
Q 009657 403 EFEEFLATLLG-GNVQEIQLRIGE----------------EARIIRLGELRGGEERRILLDLG-----ECEDVRVEYSYV 460 (529)
Q Consensus 403 ~f~~~la~~l~-~va~dv~l~i~~----------------~~~~v~lGdL~age~r~~L~el~-----~~~~~~v~~~Y~ 460 (529)
.|...+...+. .++-++.++|.- ..+.+.++.+-.+....+.+++. ....+++.+.|.
T Consensus 423 ~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l~~~~~~~Q~allYt 502 (810)
T 1pcx_A 423 KFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMADYCYVQVAVLLS 502 (810)
T ss_dssp HHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCCCSSEEEEEEEEEEE
T ss_pred HHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCCCCCcEEEEEEEEEE
Confidence 35555555443 355666666621 24578899999999999888884 234578999999
Q ss_pred cCCcceee
Q 009657 461 EGGIDECI 468 (529)
Q Consensus 461 dp~~~e~~ 468 (529)
...+...+
T Consensus 503 ~~~G~RRi 510 (810)
T 1pcx_A 503 LNNSQRRI 510 (810)
T ss_dssp CTTSCEEE
T ss_pred cCCCCEEE
Confidence 98776665
No 106
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.34 E-value=0.0054 Score=68.84 Aligned_cols=114 Identities=11% Similarity=0.102 Sum_probs=76.8
Q ss_pred ceeeeeccccCCCceeEEEE----ecCCcchHHHHHHHHHHHHH---hcCCCCeEEEEEeCCCe----------------
Q 009657 251 RAAYLSVKLAHQPATDLVLV----ASPNGPHLRLLKQSMALVVF---SLRPNDRLAIVTYSSAA---------------- 307 (529)
Q Consensus 251 ~~~~~~v~~~~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~---~L~~~DrlsIVtFss~a---------------- 307 (529)
+..-++++.+..-|+||+|| +||.. -|+.+|+.+..|++ .+..+=||+++.|.+..
T Consensus 98 ~~f~~~~~~~~~~pvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~p 176 (690)
T 3fcs_B 98 KNFSIQVRQVEDYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENP 176 (690)
T ss_dssp EEEEEEEECCBTCCEEEEEEEECSGGGHH-HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCT
T ss_pred EEEEEEEeccCCCCccEEEEecCCcchHH-HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCC
Confidence 34556777888999999999 89964 45666665555544 44677899999998843
Q ss_pred --------------EEeecCcccCHHhHHHHHHHHhccccCCCCC----hHHHHHHHHHHHHh-ccCCCCCCEEEEccCC
Q 009657 308 --------------ARVFPLKRMTSYGKRMALQVIDRLFYMGQAD----PIEGLKKGIKILED-RAHKNPQSCILHLSDT 368 (529)
Q Consensus 308 --------------~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTn----i~~gL~~A~~~l~~-~~~~n~v~~IILLTDG 368 (529)
+.+++|+ .+.....+.|+.+...|+-+ ..+||..|+---++ .+.++....|||+||.
T Consensus 177 c~~~~~~c~~~f~f~~~l~lt----~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa 252 (690)
T 3fcs_B 177 CYDMKTTCLPMFGYKHVLTLT----DQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDA 252 (690)
T ss_dssp TSSSSSCCCCCCSEEEEEEEE----SCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESS
T ss_pred CcCCCCCCCCCccceeecccC----CCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCC
Confidence 1234443 35778899999999887744 44666655521122 2334566789999997
Q ss_pred C
Q 009657 369 P 369 (529)
Q Consensus 369 ~ 369 (529)
.
T Consensus 253 ~ 253 (690)
T 3fcs_B 253 K 253 (690)
T ss_dssp C
T ss_pred c
Confidence 4
No 107
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=96.31 E-value=0.013 Score=62.27 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=75.9
Q ss_pred eeeeeccccCCCceeEEEE----ecCCcchHHHHHHHHHHHHHh---cCCCCeEEEEEeCCCe-----------------
Q 009657 252 AAYLSVKLAHQPATDLVLV----ASPNGPHLRLLKQSMALVVFS---LRPNDRLAIVTYSSAA----------------- 307 (529)
Q Consensus 252 ~~~~~v~~~~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~---L~~~DrlsIVtFss~a----------------- 307 (529)
..-++++.+..-|+||+++ +||.+ -|+.+|+-...+++. +..+=|+++..|-+..
T Consensus 110 ~f~v~~~~~~~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~ 188 (454)
T 3vi3_B 110 TFTLKFKRAEDYPIDLYYLMDLSYSMKD-DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCT 188 (454)
T ss_dssp CEEEEEECCSCCCEEEEEEEECSGGGHH-HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSC
T ss_pred EEEEEEecCCCCceeEEEEecCCcchhh-HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCc
Confidence 4556778888999999999 89964 555666655555544 4567799999998742
Q ss_pred -----------EEeecCcccCHHhHHHHHHHHhccccCCCCC----hHHHHHHHHHHHHhccCCCCCCEEEEccCCC
Q 009657 308 -----------ARVFPLKRMTSYGKRMALQVIDRLFYMGQAD----PIEGLKKGIKILEDRAHKNPQSCILHLSDTP 369 (529)
Q Consensus 308 -----------~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTn----i~~gL~~A~~~l~~~~~~n~v~~IILLTDG~ 369 (529)
+.+++|+ .+......+|+.+...|+-+ ..+||..|+---++-..++...-|||.||..
T Consensus 189 ~~~~c~~~f~fr~~l~LT----~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~a~rllV~~TDa~ 261 (454)
T 3vi3_B 189 SEQNCTTPFSYKNVLSLT----NKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAG 261 (454)
T ss_dssp SSSCCCCCCSEEEEEEEE----SCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSC
T ss_pred CccCCCCCcceeeeeecC----CCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCccceEEEEEECCCC
Confidence 1245554 25778899999999888744 4455555543222222334556788899974
No 108
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=96.26 E-value=0.0054 Score=68.73 Aligned_cols=113 Identities=14% Similarity=0.169 Sum_probs=73.7
Q ss_pred eeeeeccccCCCceeEEEE----ecCCcchHHHHHHHHHHH---HHhcCCCCeEEEEEeCCCe-----------------
Q 009657 252 AAYLSVKLAHQPATDLVLV----ASPNGPHLRLLKQSMALV---VFSLRPNDRLAIVTYSSAA----------------- 307 (529)
Q Consensus 252 ~~~~~v~~~~r~P~DLV~V----GSM~G~kL~l~K~Am~~v---i~~L~~~DrlsIVtFss~a----------------- 307 (529)
..-|+++.+..-|+||++| +||.. -|+.+|+.+..| +..+...=||+++.|.+..
T Consensus 92 ~f~~~~~~~~~ypvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~ 170 (687)
T 3k6s_B 92 AFNVTFRRAKGYPIDLYYLMDLSYSMLD-DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCP 170 (687)
T ss_dssp EEEEEECCCCCCCCEEEEEEECSSTTHH-HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCC
T ss_pred EEEEEEeccCCCceeEEEEEcCCcchHH-HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCC
Confidence 4556777888899999999 89964 455555544444 3455677899999998732
Q ss_pred ------------EEeecCcccCHHhHHHHHHHHhccccCCCCC----hHHHHHHHHHHHHhccCCCCCCEEEEccCCC
Q 009657 308 ------------ARVFPLKRMTSYGKRMALQVIDRLFYMGQAD----PIEGLKKGIKILEDRAHKNPQSCILHLSDTP 369 (529)
Q Consensus 308 ------------~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTn----i~~gL~~A~~~l~~~~~~n~v~~IILLTDG~ 369 (529)
+.+++|+. +.....+.|+.+...|+-+ ..+||..|+-=-++-..++....|||+||..
T Consensus 171 ~~~~~c~~~f~f~~~l~lt~----~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~a~rllV~~TDa~ 244 (687)
T 3k6s_B 171 NKEKECQPPFAFRHVLKLTN----NSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDG 244 (687)
T ss_dssp SCCCCCCCCCSCEEEEEEES----CSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCSSCCEEEEECSSC
T ss_pred CCCCCcCCcccceeecccCC----CHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCccceEEEEEECCCc
Confidence 22345543 4567888999998877744 4455555541001212223667799999974
No 109
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=95.96 E-value=0.02 Score=61.62 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=76.1
Q ss_pred ceeeeeccccCCCceeEEEE----ecCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCe----------------
Q 009657 251 RAAYLSVKLAHQPATDLVLV----ASPNGPHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAA---------------- 307 (529)
Q Consensus 251 ~~~~~~v~~~~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a---------------- 307 (529)
+..-++++.+..-|+||+++ +||.. -|+.+|+....+++.| ..+=||+++.|-+..
T Consensus 119 ~~f~v~~~~~~~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC 197 (503)
T 3v4v_B 119 QQLQVRFLRAEGYPVDLYYLMDLSYSMKD-DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPC 197 (503)
T ss_dssp EEEEEEEECCSSCCEEEEEEEECSGGGHH-HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCS
T ss_pred EEEEEEEEccCCCceeEEEEEecCcchhh-HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCC
Confidence 34556778889999999999 89954 5666676666665554 566799999997742
Q ss_pred -------------EEeecCcccCHHhHHHHHHHHhccccCCCCC----hHHHHHHHHHHHHhccCCCCCCEEEEccCCC
Q 009657 308 -------------ARVFPLKRMTSYGKRMALQVIDRLFYMGQAD----PIEGLKKGIKILEDRAHKNPQSCILHLSDTP 369 (529)
Q Consensus 308 -------------~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTn----i~~gL~~A~~~l~~~~~~n~v~~IILLTDG~ 369 (529)
+-+++|+. +.....+.|+.+...|+-+ ..+||..|+---++-..++...-|||.||..
T Consensus 198 ~~~~~~c~p~f~fr~~l~LT~----d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~a~rllV~~TDA~ 272 (503)
T 3v4v_B 198 PTRLERCQSPFSFHHVLSLTG----DAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRNVSRLLVFTSDDT 272 (503)
T ss_dssp SCSSSCCCCCCSEEEEEEEES----CSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSC
T ss_pred cCCCCCCCCCcceEEEEEecC----CHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCCcceEEEEEECCCC
Confidence 22455543 4667888999998887744 4466665552112222233556788899973
No 110
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=95.84 E-value=0.017 Score=61.86 Aligned_cols=114 Identities=10% Similarity=0.099 Sum_probs=76.8
Q ss_pred ceeeeeccccCCCceeEEEE----ecCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCe----------------
Q 009657 251 RAAYLSVKLAHQPATDLVLV----ASPNGPHLRLLKQSMALVVFSL---RPNDRLAIVTYSSAA---------------- 307 (529)
Q Consensus 251 ~~~~~~v~~~~r~P~DLV~V----GSM~G~kL~l~K~Am~~vi~~L---~~~DrlsIVtFss~a---------------- 307 (529)
+..-++++.+..-|+||+++ +||.. -|+.+|+....+++.| ..+=||+++.|-+..
T Consensus 98 ~~f~v~~~~~~~ypvDLy~LmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nP 176 (472)
T 3t3p_B 98 KNFSIQVRQVEDYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENP 176 (472)
T ss_dssp EEEEEEEECCSSCCEEEEEEEECSGGGHH-HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCT
T ss_pred EEEEEEeecCCCCCceEEEEEccCcchHH-HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCC
Confidence 34556778888999999999 89954 5666666666665554 566799999998742
Q ss_pred --------------EEeecCcccCHHhHHHHHHHHhccccCCCCC----hHHHHHHHHHHHHh-ccCCCCCCEEEEccCC
Q 009657 308 --------------ARVFPLKRMTSYGKRMALQVIDRLFYMGQAD----PIEGLKKGIKILED-RAHKNPQSCILHLSDT 368 (529)
Q Consensus 308 --------------~~l~pl~~mt~~~k~~a~~~I~~L~a~GgTn----i~~gL~~A~~~l~~-~~~~n~v~~IILLTDG 368 (529)
+.+++|+ .+.....+.|+.+...|+-+ ..+||..|+---++ .+.++...-|||.||.
T Consensus 177 c~~~~~~c~p~f~fr~~l~LT----~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa 252 (472)
T 3t3p_B 177 CYDMKTTCLPMFGYKHVLTLT----DQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDA 252 (472)
T ss_dssp TTTTTSCCCCCCSEEEEEEEE----SCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESS
T ss_pred CcccccCCCCCcceeEeeccC----CCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCC
Confidence 1234544 25778899999999887744 44566555421122 2334556678999997
Q ss_pred C
Q 009657 369 P 369 (529)
Q Consensus 369 ~ 369 (529)
.
T Consensus 253 ~ 253 (472)
T 3t3p_B 253 K 253 (472)
T ss_dssp C
T ss_pred C
Confidence 3
No 111
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=95.82 E-value=0.066 Score=60.86 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=78.1
Q ss_pred CceeEEEE-ecCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCCeEEeecCc--------------------------c
Q 009657 263 PATDLVLV-ASPNGPHLRLLKQSMALVVFSLRPNDRLAIVTYSSAAARVFPLK--------------------------R 315 (529)
Q Consensus 263 ~P~DLV~V-GSM~G~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~a~~l~pl~--------------------------~ 315 (529)
+|+=+.+| -|+....|+.+|+++...++.|.++-+|+||+|++.++..- +. .
T Consensus 121 pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~-l~~~~~~~~~V~~g~k~~~~~q~~~~l~~ 199 (768)
T 1m2o_A 121 PPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHD-LSSETIDRCNVFRGDREYQLEALTEMLTG 199 (768)
T ss_dssp CCEEEEEEECCSCHHHHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECC-CSSSSSEEEEEEETTSCCCHHHHHHHHHS
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEE-CCCCCCcceeeecCCccccHHHHHHHHhh
Confidence 44444444 78888899999999999999999999999999998765421 00 0
Q ss_pred c------------------------------CHHhHHHHHHHHhcccc---------CCCCChHHHHHHHHHHHHhccCC
Q 009657 316 M------------------------------TSYGKRMALQVIDRLFY---------MGQADPIEGLKKGIKILEDRAHK 356 (529)
Q Consensus 316 m------------------------------t~~~k~~a~~~I~~L~a---------~GgTni~~gL~~A~~~l~~~~~~ 356 (529)
+ -.+.+..+...|+.|.. ...+.++.||+.|+.+|+... +
T Consensus 200 l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~ 278 (768)
T 1m2o_A 200 QKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCY-K 278 (768)
T ss_dssp CCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHC-T
T ss_pred ccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhcc-C
Confidence 0 01234556677777765 356689999999999998532 3
Q ss_pred CCCCEEEEccCCCCc
Q 009657 357 NPQSCILHLSDTPTR 371 (529)
Q Consensus 357 n~v~~IILLTDG~~~ 371 (529)
+...+|++++.|.++
T Consensus 279 ~~GGrI~~F~sg~pt 293 (768)
T 1m2o_A 279 NIPARIILFASGPGT 293 (768)
T ss_dssp TSCCEEEEEESSCCC
T ss_pred CCCcEEEEEeCCCCC
Confidence 445789999999653
No 112
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=95.36 E-value=0.56 Score=54.29 Aligned_cols=198 Identities=13% Similarity=0.127 Sum_probs=124.2
Q ss_pred eeEEEE--ecCCcch---HHHHHHHHHHHHHhcCC---CCeEEEEEeCCCeEEee-------------------------
Q 009657 265 TDLVLV--ASPNGPH---LRLLKQSMALVVFSLRP---NDRLAIVTYSSAAARVF------------------------- 311 (529)
Q Consensus 265 ~DLV~V--GSM~G~k---L~l~K~Am~~vi~~L~~---~DrlsIVtFss~a~~l~------------------------- 311 (529)
.-.||| -|+...+ |+.+|+++...|+.|.+ .-+|+||+|++.++..-
T Consensus 304 pvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d 383 (926)
T 1m2v_B 304 ATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEE 383 (926)
T ss_dssp CBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSS
T ss_pred cEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhcccccccc
Confidence 334455 5665432 78899999999999976 46999999998876541
Q ss_pred ---c-----CcccCHHhHHHHHHHHhcccc------CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcch----
Q 009657 312 ---P-----LKRMTSYGKRMALQVIDRLFY------MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTY---- 373 (529)
Q Consensus 312 ---p-----l~~mt~~~k~~a~~~I~~L~a------~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~---- 373 (529)
| |..+. +.+..+...|+.|.. ...+.++.||+.|+.+|+. ...+||+++.|.++.+
T Consensus 384 ~f~P~~~~~Lv~l~-e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~-----~GGrI~~F~sg~Pt~GpG~l 457 (926)
T 1m2v_B 384 PFLPRPNSMVVSLK-ACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGIGKL 457 (926)
T ss_dssp CCCSCSSSSSEETT-TTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSSTTCC
T ss_pred ccCCCcccccccHH-HHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh-----hCCEEEEEecCCCCCCCCcc
Confidence 0 11111 345566666666542 5678899999999999975 2458999999865310
Q ss_pred --------------------------hhhc---ccccccEEEEeeeeeccC----------Ch-------hh----H--H
Q 009657 374 --------------------------HAIN---LQVPFPVHRFHVGFGFGS----------SN-------GF----V--M 401 (529)
Q Consensus 374 --------------------------~~~~---~~~~v~I~TfgvGfGfG~----------d~-------~~----~--~ 401 (529)
+.+. ...++.|..|..+..+-. .+ +| . .
T Consensus 458 ~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~ 537 (926)
T 1m2v_B 458 QRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDI 537 (926)
T ss_dssp CCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHH
T ss_pred cccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhHH
Confidence 0000 134667776633222110 00 11 0 1
Q ss_pred HHHHHHHHhhhc-eeeeeEEEEEee----------------CCceEEcCCcCCCcEEEEEEEeCC-----eeeEEEEEEE
Q 009657 402 HEFEEFLATLLG-GNVQEIQLRIGE----------------EARIIRLGELRGGEERRILLDLGE-----CEDVRVEYSY 459 (529)
Q Consensus 402 ~~f~~~la~~l~-~va~dv~l~i~~----------------~~~~v~lGdL~age~r~~L~el~~-----~~~~~v~~~Y 459 (529)
..|...+...+. .++-++.++|.- ..+.+.++.+-.+....|.+++.+ ...+++.+.|
T Consensus 538 ~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~s~~~~l~~l~~d~s~av~f~~~~~l~~~~~~~Q~allY 617 (926)
T 1m2v_B 538 VKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMADYCYVQVAVLL 617 (926)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSSTTEEEEEEECSSCCEEEEEEECSBCCSSEEEEEEEEEE
T ss_pred HHHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEeecCccccCcCceEeeccCCCCEEEEEEEeccCCCCCcEEEEEEEEE
Confidence 135555555443 366677777621 245688888989988888888842 3457889999
Q ss_pred ecCCcceee
Q 009657 460 VEGGIDECI 468 (529)
Q Consensus 460 ~dp~~~e~~ 468 (529)
....+...+
T Consensus 618 T~~~G~RRi 626 (926)
T 1m2v_B 618 SLNNSQRRI 626 (926)
T ss_dssp EETTTEEEE
T ss_pred EcCCCCEEE
Confidence 998766654
No 113
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=94.64 E-value=3.6 Score=46.46 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=123.3
Q ss_pred CceeEEEE-ecCCcch---HHHHHHHHHHHHHhcCCCC--eEEEEEeCCCeEEee---------------------cC--
Q 009657 263 PATDLVLV-ASPNGPH---LRLLKQSMALVVFSLRPND--RLAIVTYSSAAARVF---------------------PL-- 313 (529)
Q Consensus 263 ~P~DLV~V-GSM~G~k---L~l~K~Am~~vi~~L~~~D--rlsIVtFss~a~~l~---------------------pl-- 313 (529)
+|+-+.+| -|+...+ ++.+|+++...++.|.++. +|+||+|++..+..- |+
T Consensus 160 pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~~ 239 (751)
T 3eh1_A 160 PAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPD 239 (751)
T ss_dssp CCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGG
T ss_pred CcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCCChh
Confidence 44443333 5766544 8889999999999997765 899999998765311 11
Q ss_pred ---cccCHHhHHHHHHHHhcccc------CCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCcch-----------
Q 009657 314 ---KRMTSYGKRMALQVIDRLFY------MGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTRTY----------- 373 (529)
Q Consensus 314 ---~~mt~~~k~~a~~~I~~L~a------~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~~~----------- 373 (529)
..+. +.+..+...++.|.. .-.+.++.||+.|+++|+. ...+|++++.|.++-+
T Consensus 240 ~~lv~l~-e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~-----~GGrI~~F~sg~pt~GpG~l~~r~~~~ 313 (751)
T 3eh1_A 240 SLLVNLY-ESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSP-----TGGRVSVFQTQLPSLGAGLLQSREDPN 313 (751)
T ss_dssp GTSEETT-TTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTT-----TCEEEEEEECSCCCSSTTCCCCCCCSC
T ss_pred hhcccHH-HHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhc-----CCCEEEEEecCCCCCCCCccccccccc
Confidence 1111 346666666666642 2356799999999999964 3458999988854311
Q ss_pred ------------------hhhc---ccccccEEEEeeeeeccC-----------------Chhh-------HHHHHHHHH
Q 009657 374 ------------------HAIN---LQVPFPVHRFHVGFGFGS-----------------SNGF-------VMHEFEEFL 408 (529)
Q Consensus 374 ------------------~~~~---~~~~v~I~TfgvGfGfG~-----------------d~~~-------~~~~f~~~l 408 (529)
+.+. .+.++.|..|.....+-+ ..+| -...|.+.|
T Consensus 314 ~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl 393 (751)
T 3eh1_A 314 QRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDL 393 (751)
T ss_dssp GGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHH
T ss_pred cCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHH
Confidence 1110 145667776632222110 0011 123455555
Q ss_pred Hhhhc-eeeeeEEEEEee----------------CCceEEcCCcCCCcEEEEEEEeCC------eeeEEEEEEEecCCcc
Q 009657 409 ATLLG-GNVQEIQLRIGE----------------EARIIRLGELRGGEERRILLDLGE------CEDVRVEYSYVEGGID 465 (529)
Q Consensus 409 a~~l~-~va~dv~l~i~~----------------~~~~v~lGdL~age~r~~L~el~~------~~~~~v~~~Y~dp~~~ 465 (529)
...+. .++-+..++|.- ..+.+.++.+-.+..-.+.+++.+ ...++..+.|....+.
T Consensus 394 ~r~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT~~~G~ 473 (751)
T 3eh1_A 394 KRYLTRKIGFEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGE 473 (751)
T ss_dssp HHHHHSCCEEEEEEEEEECTTEEEEEEESSSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEEECTTSC
T ss_pred HHHHhhhhccceEEEEEecCCeEEEEeeCCeEeCCCCceEeccCCCCCEEEEEEEEcCCCCCCCceEEEEEEeeecCCCC
Confidence 55553 355566666521 234578888888888888888832 3457889999998776
Q ss_pred eee
Q 009657 466 ECI 468 (529)
Q Consensus 466 e~~ 468 (529)
..+
T Consensus 474 RRi 476 (751)
T 3eh1_A 474 RRI 476 (751)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 114
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=94.11 E-value=4.3 Score=46.01 Aligned_cols=203 Identities=10% Similarity=0.148 Sum_probs=123.9
Q ss_pred CCceeEEEE-ecCCc---chHHHHHHHHHHHHHhcCCC-------CeEEEEEeCCCeEEe--------------------
Q 009657 262 QPATDLVLV-ASPNG---PHLRLLKQSMALVVFSLRPN-------DRLAIVTYSSAAARV-------------------- 310 (529)
Q Consensus 262 r~P~DLV~V-GSM~G---~kL~l~K~Am~~vi~~L~~~-------DrlsIVtFss~a~~l-------------------- 310 (529)
.+|+-+.+| -|+.. .-++.++++++..++.|.++ -+|+||+|++..+..
T Consensus 176 ~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~d~ 255 (770)
T 3efo_B 176 NPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEV 255 (770)
T ss_dssp CCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTSC
T ss_pred CCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccccc
Confidence 344444333 56643 36999999999999999765 499999999865431
Q ss_pred -ecC-----cccCHHhHHHHHHHHhccc------cCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCc--c----
Q 009657 311 -FPL-----KRMTSYGKRMALQVIDRLF------YMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTR--T---- 372 (529)
Q Consensus 311 -~pl-----~~mt~~~k~~a~~~I~~L~------a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~--~---- 372 (529)
+|+ ..+. +.+..+...|+.|. ...+|.++.+|+.|+..+... +...+|++++-|.++ +
T Consensus 256 f~P~~~~~Lv~l~-e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~l 331 (770)
T 3efo_B 256 FVPLLDGFLVNYQ-ESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAA---DCPGKLFIFHSSLPTAEAPGKL 331 (770)
T ss_dssp CCCCSSSSSBCTT-TTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHH---TCCEEEEEEECSCCCSSSTTCC
T ss_pred cCCCccceeeeHH-HHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCccc
Confidence 121 1222 34555666666553 346888999999999998753 234578888877433 1
Q ss_pred ------------------------hhhhc---ccccccEEEEeeeeeccC-----------------Chhh----HHHHH
Q 009657 373 ------------------------YHAIN---LQVPFPVHRFHVGFGFGS-----------------SNGF----VMHEF 404 (529)
Q Consensus 373 ------------------------~~~~~---~~~~v~I~TfgvGfGfG~-----------------d~~~----~~~~f 404 (529)
|+.+. .+.++.|.-|..+..+-. ..+| -.+.|
T Consensus 332 ~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f 411 (770)
T 3efo_B 332 KNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQF 411 (770)
T ss_dssp CCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHH
T ss_pred cccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcchhHHHHH
Confidence 00110 144666776622211110 0011 12345
Q ss_pred HHHHHhhhc-eeeeeEEEEEee----------------CCceEEcCCcCCCcEEEEEEEeCC------eeeEEEEEEEec
Q 009657 405 EEFLATLLG-GNVQEIQLRIGE----------------EARIIRLGELRGGEERRILLDLGE------CEDVRVEYSYVE 461 (529)
Q Consensus 405 ~~~la~~l~-~va~dv~l~i~~----------------~~~~v~lGdL~age~r~~L~el~~------~~~~~v~~~Y~d 461 (529)
...|...+. .++-+..++|.- +...+.++.+-....-.+.+++.+ ...++..+.|..
T Consensus 412 ~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~ 491 (770)
T 3efo_B 412 LNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTT 491 (770)
T ss_dssp HHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCCBTTTBEEEEEEEEEEC
T ss_pred HHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCCCCCCcEEEEEEEEEEc
Confidence 555554443 466666666621 124578888888888888888832 356889999999
Q ss_pred CCcceee
Q 009657 462 GGIDECI 468 (529)
Q Consensus 462 p~~~e~~ 468 (529)
..+...+
T Consensus 492 ~~G~RRi 498 (770)
T 3efo_B 492 ISGQRRL 498 (770)
T ss_dssp TTCCEEE
T ss_pred CCCCEEE
Confidence 8776664
No 115
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.53 E-value=0.064 Score=42.09 Aligned_cols=48 Identities=21% Similarity=0.518 Sum_probs=36.2
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~~~ 113 (529)
....|.||.+ .++.+.=-.|...||..|+...+. .+.-.||.|++.-.
T Consensus 11 ~~~~C~vC~~---------~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 11 PGARCGVCGD---------GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTCCCTTTSC---------CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCcCCCCC---------CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 3567999974 245666677999999999998876 34458999987643
No 116
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=93.25 E-value=7.7 Score=43.93 Aligned_cols=202 Identities=13% Similarity=0.154 Sum_probs=123.3
Q ss_pred CceeEEEE-ecCCc---chHHHHHHHHHHHHHhcCCC-------CeEEEEEeCCCeEEe---------------------
Q 009657 263 PATDLVLV-ASPNG---PHLRLLKQSMALVVFSLRPN-------DRLAIVTYSSAAARV--------------------- 310 (529)
Q Consensus 263 ~P~DLV~V-GSM~G---~kL~l~K~Am~~vi~~L~~~-------DrlsIVtFss~a~~l--------------------- 310 (529)
+|+-+.+| -|+.. .-++.++++++..++.|.++ -+|+||+|++..+..
T Consensus 173 pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d~f 252 (766)
T 3eh2_A 173 PPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMF 252 (766)
T ss_dssp CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTTCC
T ss_pred CCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChhhhc
Confidence 44444333 56653 45899999999999999765 489999999865431
Q ss_pred ecC-----cccCHHhHHHHHHHHhccc------cCCCCChHHHHHHHHHHHHhccCCCCCCEEEEccCCCCc--c-----
Q 009657 311 FPL-----KRMTSYGKRMALQVIDRLF------YMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDTPTR--T----- 372 (529)
Q Consensus 311 ~pl-----~~mt~~~k~~a~~~I~~L~------a~GgTni~~gL~~A~~~l~~~~~~n~v~~IILLTDG~~~--~----- 372 (529)
+|+ .++. +.+..+...|+.|. ...+|.++.+|+.|+..+... +...+|++++-|.++ +
T Consensus 253 ~P~~~~~lv~l~-e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~l~ 328 (766)
T 3eh2_A 253 VPLLDGFLVNVN-ESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA---ECAGKLFLFHTSLPIAEAPGKLK 328 (766)
T ss_dssp CCCCTTSSBCTT-TTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT---TCCEEEEEEECSCCCSSSTTCCC
T ss_pred cccccceeEeHH-HHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCcccc
Confidence 121 1222 34556666666553 346788999999999998753 345688888877433 1
Q ss_pred -----------------------hhhhc---ccccccEEEEeeeeeccC-----------------ChhhH----HHHHH
Q 009657 373 -----------------------YHAIN---LQVPFPVHRFHVGFGFGS-----------------SNGFV----MHEFE 405 (529)
Q Consensus 373 -----------------------~~~~~---~~~~v~I~TfgvGfGfG~-----------------d~~~~----~~~f~ 405 (529)
|+.+. .+.++.|.-|..+..+-. ..+|- .+.|.
T Consensus 329 ~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~ 408 (766)
T 3eh2_A 329 NRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFL 408 (766)
T ss_dssp CCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHH
T ss_pred cccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchhHHHHHH
Confidence 00000 144666776622211110 00111 22355
Q ss_pred HHHHhhhc-eeeeeEEEEEee----------------CCceEEcCCcCCCcEEEEEEEeC------CeeeEEEEEEEecC
Q 009657 406 EFLATLLG-GNVQEIQLRIGE----------------EARIIRLGELRGGEERRILLDLG------ECEDVRVEYSYVEG 462 (529)
Q Consensus 406 ~~la~~l~-~va~dv~l~i~~----------------~~~~v~lGdL~age~r~~L~el~------~~~~~~v~~~Y~dp 462 (529)
+.|...+. .++-+..++|.- ......++.+-.+..-.+.+++. ....++..+.|...
T Consensus 409 ~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~ 488 (766)
T 3eh2_A 409 SDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSC 488 (766)
T ss_dssp HHHHHHHHSCEEEEEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCCCTTTCEEEEEEEEEECT
T ss_pred HHHHHHhhhcceeeEEEEEEecCCeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCCCCCCcEEEEEEEEeEcC
Confidence 55555543 456666666621 12456778888888888888873 23467899999998
Q ss_pred Ccceee
Q 009657 463 GIDECI 468 (529)
Q Consensus 463 ~~~e~~ 468 (529)
.+...+
T Consensus 489 ~G~RRi 494 (766)
T 3eh2_A 489 AGQRRL 494 (766)
T ss_dssp TSCEEE
T ss_pred CCCEEE
Confidence 776664
No 117
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=86.45 E-value=1.2 Score=36.79 Aligned_cols=54 Identities=22% Similarity=0.671 Sum_probs=41.0
Q ss_pred ccccccccccccccCCCCCCCcceEe--CCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFT--AQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~--~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|.||-+++.. +..| .+|. -+|+--.|..|..-=.+.+++.||-|+++|+.
T Consensus 15 ~~qiCqiCGD~VG~---~~~G-e~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGL---TVEG-DLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCB---CSSS-SBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCcccc---CCCC-CEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 34699999999852 1122 2444 46888999999998777888899999999874
No 118
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=84.87 E-value=0.42 Score=39.69 Aligned_cols=33 Identities=21% Similarity=0.534 Sum_probs=25.0
Q ss_pred cccccccccccccCCCCCCCcceE-eCCCCCcccHhHHHHH
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIF-TAQCSHAFHFACISSN 97 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~-~~~C~H~FH~~CI~~W 97 (529)
+-.|.||++++. ..++. -+.|+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~-------~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPA-------QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSC-------CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCC-------CCceEECCcCChHHhHHHCHHH
Confidence 358999998753 13333 3899999999999983
No 119
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=83.15 E-value=1.5 Score=36.71 Aligned_cols=48 Identities=21% Similarity=0.565 Sum_probs=35.1
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccccCCcC
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRN 118 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~~ 118 (529)
.-..|-.|....+ .++ .-..|.+|..|+.--+.... .||+|... +|-.
T Consensus 27 G~~nCKsCWf~~k---------~LV-~C~dHYLCl~CLtlmL~~Sd-rCpIC~~p---LPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK---------GLV-ECNNHYLCLNCLTLLLSVSN-RCPICKMP---LPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS---------SEE-ECSSCEEEHHHHHHTCSSSS-EETTTTEE---CCCC
T ss_pred CcccChhhccccC---------Cee-eecchhhHHHHHHHHHhhcc-CCcccCCc---CCcc
Confidence 3467999998653 222 22569999999999888766 89999665 5554
No 120
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=81.91 E-value=0.61 Score=45.66 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=23.3
Q ss_pred CCCCEEEEccCCCCcch-hhh-----cccccccEEEEee
Q 009657 357 NPQSCILHLSDTPTRTY-HAI-----NLQVPFPVHRFHV 389 (529)
Q Consensus 357 n~v~~IILLTDG~~~~~-~~~-----~~~~~v~I~Tfgv 389 (529)
...+.|||||||.++.. +.. ..+.||.|||+||
T Consensus 8 ~~~k~iillTDG~~~~g~~p~~aa~~a~~~gi~v~tIGi 46 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGPDPVEAARRAHRHGIVVNVIGI 46 (242)
T ss_dssp CCEEEEEEEESSCCCSSSCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCccEEEEEccCCCCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 45678999999987632 222 2367899999955
No 121
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.77 E-value=0.41 Score=44.53 Aligned_cols=47 Identities=26% Similarity=0.744 Sum_probs=35.0
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAHW 112 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~~ 112 (529)
++..|.||.. +|+.+.--.|...||..|+.+-+. .+.-.||.|+...
T Consensus 3 ~~~~C~~C~~---------~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQN---------GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCC---------CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCC---------CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3567999985 345666667999999999977665 2345799999753
No 122
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.73 E-value=0.78 Score=35.08 Aligned_cols=46 Identities=26% Similarity=0.899 Sum_probs=34.3
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
....|.||... +.-+.--.|...||..|+..-+. .+.-.||.|+++
T Consensus 10 ~~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---------CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 45689999862 35566667999999999997543 345689999864
No 123
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.86 E-value=0.41 Score=45.46 Aligned_cols=46 Identities=26% Similarity=0.760 Sum_probs=34.5
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
+...|.+|.. +|+.+.--.|...||..|+.+.+. .+.-.||.|+..
T Consensus 6 ~~~~C~~C~~---------~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQN---------GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCC---------CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCC---------CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 4567999975 245566667999999999987664 334579999875
No 124
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=80.38 E-value=0.98 Score=35.69 Aligned_cols=51 Identities=18% Similarity=0.387 Sum_probs=35.5
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhC---CCCcccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRH---GSVTCPICRAHWT 113 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~---~~~~CPlCR~~~~ 113 (529)
....|.||..... ++.-+.--.|...||..|+..-... +.-.||.|+.+..
T Consensus 17 ~~~~C~~C~~~~~------~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD------GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS------SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC------CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3457999987642 2234555579999999999865542 3567999987643
No 125
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=79.65 E-value=1.7 Score=37.18 Aligned_cols=53 Identities=23% Similarity=0.493 Sum_probs=34.2
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHH------HhhCCCCcccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISS------NVRHGSVTCPICR 109 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~------Wl~~~~~~CPlCR 109 (529)
....|.+|+..=..+.+...++-+.=..|+..||..|+.. .+..+.-.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4568999998643222222345666678999999999953 2334455677665
No 126
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.14 E-value=0.49 Score=38.98 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=38.3
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-------CCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-------HGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-------~~~~~CPlCR~~~~~ 114 (529)
....|.||...-. ...+.-++--.|...||..|+..=+. .+.-.||.|+...+.
T Consensus 15 ~~~~C~vC~~~~~----~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTV----ASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCC----CTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCC----CCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 3568999997532 12345666678999999999987542 345689999887554
No 127
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=78.58 E-value=0.83 Score=39.31 Aligned_cols=51 Identities=20% Similarity=0.475 Sum_probs=33.3
Q ss_pred ccccccccccccCCCCCC-CcceEeCCCCCcccHhHHHHH------hhCCCCcccccc
Q 009657 59 NLCAICLEALSYSSGGSP-GQAIFTAQCSHAFHFACISSN------VRHGSVTCPICR 109 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~-~~~~~~~~C~H~FH~~CI~~W------l~~~~~~CPlCR 109 (529)
..|.||+..-..+.+.|. +.-+.=..|+..||..|+..+ +..+.-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 479999987533333343 345566789999999999865 233444576664
No 128
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=77.49 E-value=0.75 Score=35.24 Aligned_cols=50 Identities=22% Similarity=0.456 Sum_probs=34.8
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~~~~CPlCR~~ 111 (529)
....|+||...+. ..+.-|.=-.|..-||..|+.--.. .....||.|+.+
T Consensus 5 e~~~C~~C~~~~~-----~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYA-----ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCC-----SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccC-----CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3557999998763 1234455557999999999975432 245689999875
No 129
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.26 E-value=1.3 Score=32.23 Aligned_cols=45 Identities=27% Similarity=0.763 Sum_probs=31.4
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRA 110 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~ 110 (529)
.|.||...-. ++.-+.=-.|...||..|+..=+. .+.-.||.|+.
T Consensus 2 ~C~vC~~~~~------~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE------DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC------CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC------CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888886421 345666678999999999975443 23457999975
No 130
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.23 E-value=0.46 Score=35.62 Aligned_cols=46 Identities=26% Similarity=0.884 Sum_probs=33.1
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRA 110 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~ 110 (529)
.....|.||... +.-+.--.|...||..|+..-+. .+.-.||.|..
T Consensus 7 ~~~~~C~vC~~~---------g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---------SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---------CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345689999863 35566667999999999986543 23446998865
No 131
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=77.17 E-value=1.1 Score=37.52 Aligned_cols=46 Identities=24% Similarity=0.496 Sum_probs=31.7
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh--CCCCccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR--HGSVTCPICRA 110 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~--~~~~~CPlCR~ 110 (529)
...| ||-.... .+.-|.=-.|.-.||..|+..=+. ...-.||.|+.
T Consensus 28 ~vrC-iC~~~~~------~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHD------DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSC------SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccC------CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 8876543 345566677999999999976332 12358999974
No 132
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=77.08 E-value=2 Score=38.58 Aligned_cols=46 Identities=30% Similarity=0.606 Sum_probs=35.0
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----------CCCCccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----------HGSVTCPICRA 110 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----------~~~~~CPlCR~ 110 (529)
..+..|.||.+ +|+-+.--.|-..||..||..-+. .+.-.||+|+.
T Consensus 61 g~~d~C~vC~~---------GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAE---------GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCC---------CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCC---------CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45678999987 356666667999999999997663 34457999974
No 133
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=76.62 E-value=0.71 Score=35.31 Aligned_cols=46 Identities=22% Similarity=0.774 Sum_probs=32.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
+...|.||.+. +.-+.--.|...||..|+..-+. .+.-.||.|+.+
T Consensus 8 ~~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---------GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---------SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---------CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45689999752 34555556999999999986443 234579999764
No 134
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.34 E-value=4.4 Score=33.62 Aligned_cols=45 Identities=33% Similarity=0.800 Sum_probs=28.2
Q ss_pred ccccccccccccccCCCCCCCcceEeCC--CC-CcccHhHHHHHhh---CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQ--CS-HAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~--C~-H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
...-| ||..... +.-|.--. |. ..||+.|+. +. .+.-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-------g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-------GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-------SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-------CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34456 9987532 33333233 55 689999997 33 234689999865
No 135
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=75.60 E-value=0.76 Score=43.13 Aligned_cols=45 Identities=22% Similarity=0.744 Sum_probs=33.0
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
...|.+|... |+-+.--.|...||..|+.+=+. .+.-.||.|+..
T Consensus 2 ~~~C~~C~~~---------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---------SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---------CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999852 45555667889999999976443 344579999875
No 136
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.40 E-value=1.4 Score=34.90 Aligned_cols=47 Identities=23% Similarity=0.484 Sum_probs=31.4
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHh--------hCCCCccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNV--------RHGSVTCPICRAHW 112 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl--------~~~~~~CPlCR~~~ 112 (529)
..| ||..... .+.-|.--.|..-||..|+.--. ......||.|+..-
T Consensus 17 ~~C-~C~~~~~------~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHN------NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCC------SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccC------CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 456 8987653 23445555799999999995321 12456899998753
No 137
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=74.44 E-value=0.58 Score=36.06 Aligned_cols=51 Identities=22% Similarity=0.630 Sum_probs=36.5
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHh------hCCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNV------RHGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl------~~~~~~CPlCR~~ 111 (529)
+...|.||..... ...+.-++--.|.-.||..|+..-+ -.+.-.||.|...
T Consensus 5 ~~~~C~vC~~~~~----~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYS----EAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCC----BTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCC----CCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4568999997642 2235666667899999999998643 2345679999764
No 138
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.11 E-value=1.7 Score=34.84 Aligned_cols=48 Identities=27% Similarity=0.525 Sum_probs=30.9
Q ss_pred ccccccccccccccCCCCCCCcceEeC--CCCCcccHhHHHHHhh--------CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTA--QCSHAFHFACISSNVR--------HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~--~C~H~FH~~CI~~Wl~--------~~~~~CPlCR~~ 111 (529)
....| ||-.... .+.-|.=- .|..-||..|+.---. .....||.|+..
T Consensus 15 ~~~~C-iC~~~~~------~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLE------TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCC------CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCC------CCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34567 8887632 23444444 6999999999963221 124689999875
No 139
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=73.77 E-value=0.6 Score=39.78 Aligned_cols=50 Identities=20% Similarity=0.456 Sum_probs=33.4
Q ss_pred cccccccccccccCCCCCCCcceEeC-CCCCcccHhHHHHHh---------hCCCCccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTA-QCSHAFHFACISSNV---------RHGSVTCPICRAHW 112 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~-~C~H~FH~~CI~~Wl---------~~~~~~CPlCR~~~ 112 (529)
...|.||...+. ..+.-+.-- .|..-||..|+.--. ......||.|+...
T Consensus 3 ~~~C~iC~~p~~-----~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVN-----DDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCC-----TTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccC-----CCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999874 123333333 689999999985321 01345899999863
No 140
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.21 E-value=0.75 Score=35.68 Aligned_cols=46 Identities=35% Similarity=0.845 Sum_probs=33.8
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
++..|.||... +.-+.--.|...||..|+..-+. .+.-.||.|...
T Consensus 7 ~~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---------GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---------SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---------CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 46789999852 35566667999999999986443 234579999764
No 141
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=70.17 E-value=0.88 Score=34.50 Aligned_cols=46 Identities=26% Similarity=0.889 Sum_probs=33.8
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
++..|.||... +.-+.--.|...||..|+.+-+. .+.-.||.|...
T Consensus 4 ~~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---------SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---------CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 45689999862 35666668999999999986443 334579999765
No 142
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.68 E-value=3.1 Score=32.76 Aligned_cols=45 Identities=33% Similarity=0.792 Sum_probs=28.4
Q ss_pred ccccccccccccccCCCCCCCcceEeCC--CC-CcccHhHHHHHhh---CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQ--CS-HAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~--C~-H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
....| ||.... .+.-+.--. |. ..||+.|+. +. .+.-.||.|+..
T Consensus 15 ~~~~C-~C~~~~-------~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVS-------YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCS-------CSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCC-------CCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34567 897642 233333333 66 689999997 33 244689999864
No 143
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=69.19 E-value=1 Score=38.35 Aligned_cols=29 Identities=28% Similarity=0.800 Sum_probs=19.7
Q ss_pred CCCCCcccHhHHHHHhhCCCCcccccccccccCCc
Q 009657 83 AQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPR 117 (529)
Q Consensus 83 ~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~ 117 (529)
..||+.| .+.+ .....||.|+..|-+.|.
T Consensus 71 ~~CG~~F----~~~~--~kPsrCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 71 RKCGFVF----KAEI--NIPSRCPKCKSEWIEEPR 99 (105)
T ss_dssp TTTCCBC----CCCS--SCCSSCSSSCCCCBCCCC
T ss_pred hhCcCee----cccC--CCCCCCcCCCCCccCCcc
Confidence 4599999 1221 122479999999987664
No 144
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.18 E-value=2.1 Score=35.39 Aligned_cols=47 Identities=21% Similarity=0.736 Sum_probs=34.5
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
.+...|.||... ++-+.--.|.-.||..|+.+=+. .+.-.||.|+..
T Consensus 23 ~n~~~C~vC~~~---------g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---------SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---------CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 346789999863 35566667888999999977554 344579999864
No 145
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=68.05 E-value=5.2 Score=35.34 Aligned_cols=46 Identities=30% Similarity=0.616 Sum_probs=33.8
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHh----------hCCCCccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNV----------RHGSVTCPICRA 110 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl----------~~~~~~CPlCR~ 110 (529)
..+..|.||.+ +|+.+---.|-..||..||...+ ..+.-.|++|+-
T Consensus 55 g~~~~C~vC~d---------GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAE---------GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCC---------CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCC---------CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 45677999987 34555556799999999999763 123457999964
No 146
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.70 E-value=2.2 Score=36.23 Aligned_cols=48 Identities=23% Similarity=0.582 Sum_probs=32.3
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICR 109 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR 109 (529)
.++..|.||.+.=+ ...-+.=..|...||..|+...+. .+.-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~------~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGD------LLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCC------TTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCC------CcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45678999987421 122355578999999999988764 2334566654
No 147
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=66.67 E-value=2.3 Score=34.91 Aligned_cols=52 Identities=23% Similarity=0.558 Sum_probs=35.0
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-CCCCcccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPICRAH 111 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-~~~~~CPlCR~~ 111 (529)
.+...|.||...-. ...+.-+.--.|.-.||..|+..-+. .+.-.||.|...
T Consensus 23 ~~~~~C~vC~~~~s----~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGES----QNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSS----CSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCC----CCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 34678999987421 11234555567889999999985332 345579999875
No 148
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=66.05 E-value=1.5 Score=40.99 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=33.4
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----------CCCCcccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----------HGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----------~~~~~CPlCR~~ 111 (529)
...|+||...+.... .+..-|.--.|..-||..|+.---. .....||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~--~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDD--YESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCC--TTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcc--cCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 357999999886110 0112445567999999999854210 014589999875
No 149
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=65.85 E-value=4.7 Score=32.70 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=26.1
Q ss_pred cccccccccccccCCCCCCCcce-EeCCCCCcccHhHHHHHhh
Q 009657 58 KNLCAICLEALSYSSGGSPGQAI-FTAQCSHAFHFACISSNVR 99 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~-~~~~C~H~FH~~CI~~Wl~ 99 (529)
.-.|.+|.+.++ +.+-+ -...=.|.|||.|-...++
T Consensus 15 ~l~CtlC~erLE------dtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 15 PLCCTICHERLE------DTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCCCSSSCSCCS------STTSEECSSCSSCEECHHHHHHHHH
T ss_pred eeEeecchhhhc------cCceeeCCCccCCeeeccccHHHHH
Confidence 458999999996 22222 2233589999999999887
No 150
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.43 E-value=1.6 Score=36.11 Aligned_cols=49 Identities=20% Similarity=0.619 Sum_probs=34.0
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
+...|.||...-. .+.-+.--.|...||..|+.+=+. .+.-.||.|...
T Consensus 15 ~~~~C~vC~~~~~------~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDE------DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGG------GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCC------CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3568999987532 234555567999999999985333 334479999865
No 151
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=59.71 E-value=3.1 Score=35.52 Aligned_cols=48 Identities=25% Similarity=0.707 Sum_probs=32.3
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
..|.||...- ..++..+.--.|...||..|+.+-+. .+.-.||.|+.+
T Consensus 62 ~~C~vC~~~~-----~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 62 KTCSSCRDQG-----KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp CCBTTTCCCC-----CTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred CccccccCcC-----CCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence 4677887531 11345566677999999999976554 334579999853
No 152
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=56.64 E-value=3.9 Score=32.22 Aligned_cols=51 Identities=24% Similarity=0.554 Sum_probs=35.1
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-~~~~~CPlCR~~ 111 (529)
....|.||...-. ..++.-+.--.|.-.||..|+..-.. .+.-.||.|+..
T Consensus 15 ~~~~C~vC~~~~s----~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGES----QNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCC----CSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCC----CCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4578999987521 12345566668999999999985322 345579999764
No 153
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=55.90 E-value=3.6 Score=37.56 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=32.5
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----CCCCcccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----HGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~~~~CPlCR~~ 111 (529)
...| ||..... ..+.-+.--.|...||..|+.--.. ...-.||.|+..
T Consensus 8 ~~~C-~C~~~~~-----~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 8 KLYC-ICKTPED-----ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CEET-TTTEECC-----TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CcEe-eCCCCCC-----CCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 4578 9988653 1234455567999999999963221 345689999875
No 154
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=53.40 E-value=4.3 Score=29.77 Aligned_cols=45 Identities=16% Similarity=0.350 Sum_probs=27.8
Q ss_pred cccccccccccCCCCCCCcceEeC-CCCCcccHhHHHHHhh---CCCCcccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTA-QCSHAFHFACISSNVR---HGSVTCPICR 109 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~-~C~H~FH~~CI~~Wl~---~~~~~CPlCR 109 (529)
.|.||...+. .++.-|.=- .|..-||..|+.--.. .....||.|+
T Consensus 4 ~cc~C~~p~~-----~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCK-----DKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCC-----TTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccC-----CCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778877663 122233334 5888999999864221 2456899985
No 155
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=52.94 E-value=3 Score=33.51 Aligned_cols=45 Identities=27% Similarity=0.736 Sum_probs=29.3
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCC-Cccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGS-VTCPICRA 110 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~-~~CPlCR~ 110 (529)
.|.||...- .++..+.--.|...||..|+.+-|. .+. -.||.|+.
T Consensus 28 ~C~vC~~~~------d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ------DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS------CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC------CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665532 1345556667999999999996554 222 47999975
No 156
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=51.62 E-value=23 Score=28.12 Aligned_cols=39 Identities=23% Similarity=0.485 Sum_probs=28.4
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|.-|-+.+. +..+. .-+..||..|. .|-.|+..+..
T Consensus 25 ~~~C~~C~~~I~-------~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIV-------GAVVK--ARDKYRHPECF---------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCC-------SCCEE--SSSCEECTTTC---------CCSSSCCCTTT
T ss_pred CCCcccCCCEec-------ccEEE--ECCceECccCC---------EecCCCCCCCC
Confidence 458999999885 23332 25789999887 69999887643
No 157
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=51.23 E-value=4.2 Score=31.90 Aligned_cols=46 Identities=26% Similarity=0.720 Sum_probs=30.0
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CC-CCcccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HG-SVTCPICRAH 111 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~-~~~CPlCR~~ 111 (529)
.|.||...- .++..+.=-.|...||..|+.+=+. .+ .-.||.|+.+
T Consensus 20 ~C~~C~~~~------~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ------DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCS------CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcC------CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 466776531 1334555567999999999985443 23 4479999754
No 158
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=51.04 E-value=4.5 Score=30.70 Aligned_cols=43 Identities=35% Similarity=0.833 Sum_probs=27.0
Q ss_pred ccccccccccccCCCCCCCcceEeCC--CC-CcccHhHHHHHhh---CCCCcccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQ--CS-HAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~--C~-H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
.-| ||...- .+.-+.--. |. ..||..|+. +. .+.-.||.|+++
T Consensus 11 ~~C-~C~~~~-------~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 11 TYC-LCHQVS-------YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp EET-TTTEEC-------CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CEE-ECCCcC-------CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 456 898752 234333334 55 689999998 43 245689999763
No 159
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.02 E-value=4.6 Score=39.03 Aligned_cols=46 Identities=26% Similarity=0.720 Sum_probs=28.1
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CC-CCcccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HG-SVTCPICRAH 111 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~-~~~CPlCR~~ 111 (529)
.|.+|...= .++.-+.--.|...||..|+.+=+. .+ .-.||.|+..
T Consensus 176 ~C~vC~~~~------~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQ------DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCC------C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCC------CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 688887632 1345566667999999999996443 23 3479999753
No 160
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=50.58 E-value=4.7 Score=30.51 Aligned_cols=43 Identities=33% Similarity=0.806 Sum_probs=27.6
Q ss_pred ccccccccccccCCCCCCCcceEeCC--CC-CcccHhHHHHHhh---CCCCcccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQ--CS-HAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~--C~-H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
.-| ||.... .+.-+.--. |. ..||..|+. +. .+.-.||.|+++
T Consensus 10 ~yC-~C~~~~-------~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 10 TYC-LCHQVS-------YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp EET-TTTEEC-------CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred cEE-ECCCCC-------CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 456 897753 234444344 66 699999998 33 234579999764
No 161
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.91 E-value=4.4 Score=32.43 Aligned_cols=45 Identities=22% Similarity=0.688 Sum_probs=31.3
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CC-CCccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HG-SVTCPICRA 110 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~-~~~CPlCR~ 110 (529)
.|.||...- .++.-+.=-.|...||..|+.+=+. .+ .-.||.|.+
T Consensus 28 ~C~vC~~~~------~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH------EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC------CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcC------CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 788888642 1345666668999999999985443 23 347999875
No 162
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.19 E-value=19 Score=28.72 Aligned_cols=40 Identities=18% Similarity=0.497 Sum_probs=29.6
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|.-|-+.+. +..+.. -+..||..|. .|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~-------~~~v~a--~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-------GPFLVA--LGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-------SCEEEE--TTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec-------ceEEEE--CCccccccCC---------ccCCCCCCCCC
Confidence 3568999999884 233333 4899999887 69999987654
No 163
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=46.95 E-value=13 Score=38.33 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=33.3
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----CCCCccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----HGSVTCPICRAHW 112 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~~~~CPlCR~~~ 112 (529)
-.|+|-+..|. .+.....|.|.-||.. ..|+. ...-.||+|.+..
T Consensus 250 L~CPlS~~ri~--------~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMK--------YPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCS--------SEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCcccccc--------ccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCccc
Confidence 46998888886 7788899999866654 33443 4556899998764
No 164
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=45.10 E-value=4.7 Score=32.67 Aligned_cols=45 Identities=27% Similarity=0.461 Sum_probs=28.6
Q ss_pred ccccccccccCCCCCCCcceEeC-CCCCcccHhHHHHHhh-CCCCcccccc
Q 009657 61 CAICLEALSYSSGGSPGQAIFTA-QCSHAFHFACISSNVR-HGSVTCPICR 109 (529)
Q Consensus 61 C~ICl~~~~~~~~~~~~~~~~~~-~C~H~FH~~CI~~Wl~-~~~~~CPlCR 109 (529)
|+-|-..+.. ..+...++- .|+|.|++.|-..|-+ |...+|..=+
T Consensus 28 CP~C~~~~~~----~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~ 74 (86)
T 2ct7_A 28 CAQCSFGFIY----EREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQ 74 (86)
T ss_dssp CSSSCCCEEC----CCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHH
T ss_pred CcCCCchhee----cCCCCceEeCCCCCccccccCCchhhcCCCCChHHHH
Confidence 7766665541 122333455 4999999999999943 4445687644
No 165
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.56 E-value=7.4 Score=30.37 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=31.5
Q ss_pred cccccccccccccCCCCCCC-cceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPG-QAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~-~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
...| ||..... .+ .-|.--.|..-||..|+.--.. .....||.|+.+
T Consensus 16 ~~~C-~C~~~~~------~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDD------DGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSC------CSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccC------CCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3568 7877542 22 3455567999999999875321 234689999875
No 166
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=42.54 E-value=7.4 Score=29.73 Aligned_cols=46 Identities=33% Similarity=0.790 Sum_probs=27.8
Q ss_pred cccccccccccccCCCCCCCcceEeCC--CC-CcccHhHHHHHhh-CCCCcccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQ--CS-HAFHFACISSNVR-HGSVTCPICRAH 111 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~--C~-H~FH~~CI~~Wl~-~~~~~CPlCR~~ 111 (529)
..-| ||.... .+.-+.--. |. ..||..|+.---. .+.-.||.|+++
T Consensus 11 ~~yC-~C~~~~-------~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYC-LCNQVS-------YGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CEET-TTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CcEE-ECCCCC-------CCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 3456 898753 233333334 55 8999999972111 234579999764
No 167
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=41.77 E-value=17 Score=27.95 Aligned_cols=48 Identities=23% Similarity=0.515 Sum_probs=30.0
Q ss_pred ccccccccccccccCCCCCCCcceEeC-CCCCcccHhHHHHHhh---------CCCCcccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTA-QCSHAFHFACISSNVR---------HGSVTCPICR 109 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~-~C~H~FH~~CI~~Wl~---------~~~~~CPlCR 109 (529)
....|++|...+. ....-|.-- .|.--||+.|+.--.. ...-.||.|.
T Consensus 7 ~~~~C~~C~~p~~-----~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVN-----DDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCC-----TTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccC-----CCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3568999999874 122334444 7999999999853221 1134688885
No 168
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=40.01 E-value=6.3 Score=33.26 Aligned_cols=46 Identities=17% Similarity=0.564 Sum_probs=31.6
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
.|.||...-. +...+.--.|...||..|+.+=+. .+.-.||.|+..
T Consensus 56 ~C~~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGE------DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSC------CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCC------CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 5777776421 334566678999999999986443 234579999764
No 169
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=39.60 E-value=9 Score=29.79 Aligned_cols=46 Identities=20% Similarity=0.512 Sum_probs=30.8
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh--CCCCccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR--HGSVTCPICRA 110 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~--~~~~~CPlCR~ 110 (529)
...| ||..... ++.-|.=-.|..-||..|+.--.. .....||.|+.
T Consensus 19 ~~~C-iC~~~~~------~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA------GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT------TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC------CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4567 9987542 234555567999999999974332 13468999975
No 170
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=39.54 E-value=5.3 Score=30.92 Aligned_cols=46 Identities=22% Similarity=0.484 Sum_probs=26.5
Q ss_pred ccccccccccccCCCCCCCcceEeC--CCCCcccHhHHHHHh---hC----CCCcccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTA--QCSHAFHFACISSNV---RH----GSVTCPICRAH 111 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~--~C~H~FH~~CI~~Wl---~~----~~~~CPlCR~~ 111 (529)
-.| ||-.... .+.-|.-- .|..-||..|+.--- .. ....||.||..
T Consensus 11 v~C-~C~~~~~------~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 11 VRC-ICSSTMV------NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp ECC-TTCCCSC------CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred EEe-ECCCCcC------CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 356 8866432 23333222 388899999984211 11 13579999854
No 171
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.29 E-value=25 Score=36.14 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=32.5
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----CCCCccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----HGSVTCPICRAHW 112 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~~~~CPlCR~~~ 112 (529)
-.|+|-+..|. .+.....|.|.=||.. ..|+. ...-.||+|.+..
T Consensus 216 L~CPlS~~ri~--------~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 216 LMCPLGKMRLT--------IPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp SBCTTTCSBCS--------SEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeCCCccceec--------cCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCccc
Confidence 35888888886 7788889999865553 33443 4456899999874
No 172
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=38.65 E-value=11 Score=31.75 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=10.9
Q ss_pred cccHhHHHHHhh
Q 009657 88 AFHFACISSNVR 99 (529)
Q Consensus 88 ~FH~~CI~~Wl~ 99 (529)
-||+.|++.|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999997
No 173
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.59 E-value=17 Score=30.88 Aligned_cols=45 Identities=22% Similarity=0.679 Sum_probs=29.6
Q ss_pred CccccccccccccccCCCCCCCcceEeC--CCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTA--QCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~--~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
..+..|.+|.+ .|+.+.-- .|-..||..|+. +. .+.-.||-|+-.
T Consensus 13 ~~~~~C~~C~~---------~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 13 MHEDYCFQCGD---------GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SSCSSCTTTCC---------CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCcCCC---------CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 34678999983 23433333 488999999997 44 234568877644
No 174
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=38.49 E-value=11 Score=31.78 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=10.8
Q ss_pred cccHhHHHHHhh
Q 009657 88 AFHFACISSNVR 99 (529)
Q Consensus 88 ~FH~~CI~~Wl~ 99 (529)
-||+.|++.|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999996
No 175
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.27 E-value=21 Score=28.27 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=31.6
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----CCCCccccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----HGSVTCPICRAHW 112 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~~~~CPlCR~~~ 112 (529)
.| ||..... ..+.-|.--.|..-||..|+.--.. .....||.|+..-
T Consensus 14 ~C-~C~~~~d-----~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 14 YC-LCRQPYN-----VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CS-TTSCSCC-----SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred EE-EcCCccC-----CCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 45 8987652 1234555567999999999963221 2456899998753
No 176
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=37.83 E-value=23 Score=40.93 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=38.6
Q ss_pred CccccccccccccccCCCCCCCcceEeCCCC-CcccHhHHHHHhhCCCCcccccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTAQCS-HAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~-H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.....|+|-++-|. ++ ++++.| +.|-+.+|..|+..+. +||+=|.+..
T Consensus 889 P~~F~cPIs~~lM~--------DP-VilpsG~~TydR~~I~~wl~~~~-tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTIMK--------DP-VILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSBCS--------SE-EECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCC
T ss_pred cHHhCCcchhhHHh--------CC-eEcCCCCEEECHHHHHHHHhcCC-CCCCCCCCCC
Confidence 45678999999995 44 456676 6999999999998755 9999887754
No 177
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=37.37 E-value=4.4 Score=34.67 Aligned_cols=49 Identities=24% Similarity=0.674 Sum_probs=33.5
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAHWT 113 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~~~ 113 (529)
..|.||...-. ++..+.=-.|...||..|+.+=+. .+.-.||.|+...+
T Consensus 59 ~~C~~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSEN------DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTT------TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCC------CCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 36778876432 345666678999999999985433 23446999987644
No 178
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=36.90 E-value=5.9 Score=30.14 Aligned_cols=41 Identities=22% Similarity=0.537 Sum_probs=27.7
Q ss_pred cccccccccccccCCCCCCCcceEeCC---CCCcccHhHHHHHhhCCC
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQ---CSHAFHFACISSNVRHGS 102 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~---C~H~FH~~CI~~Wl~~~~ 102 (529)
...|+-|.-.++ ..+|..-++-. |+|.|+..|...|-.++.
T Consensus 6 ~k~CP~C~~~Ie----k~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~ 49 (60)
T 1wd2_A 6 TKECPKCHVTIE----KDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS 49 (60)
T ss_dssp CCCCTTTCCCCS----SCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGT
T ss_pred ceECcCCCCeeE----eCCCCCcEEECCCCcCCEEeeCcCCCcccCCC
Confidence 357888888886 22344444444 888888888888876543
No 179
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=35.13 E-value=19 Score=38.63 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=30.9
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----CCCCcccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----HGSVTCPICRAH 111 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~~~~CPlCR~~ 111 (529)
..+||..... ..+.-+.--.|..-||..|+.---. .....||.|+..
T Consensus 38 ~yC~C~~~~d-----~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYCVCRQPYD-----VNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EETTTTEECC-----TTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEEeCCCcCC-----CCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3349987653 1244555567999999999954222 123589999875
No 180
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=35.07 E-value=8.4 Score=31.83 Aligned_cols=43 Identities=21% Similarity=0.641 Sum_probs=26.4
Q ss_pred cccccccccccccCCCCCCCcceEeCCCC---CcccHhHHHHHhh---CCCCcccc-ccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCS---HAFHFACISSNVR---HGSVTCPI-CRA 110 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~---H~FH~~CI~~Wl~---~~~~~CPl-CR~ 110 (529)
..-| ||.... .+.-|.--.|. ..||+.|+. |. .+.-.||. |+.
T Consensus 26 ~~yC-iC~~~~-------~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVS-------YGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCC-------SSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCC-------CCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 3456 998643 23333333444 689999996 32 23458999 974
No 181
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.95 E-value=25 Score=26.91 Aligned_cols=40 Identities=18% Similarity=0.463 Sum_probs=29.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|..|-+.+. .++.+.. -+..||..|. +|-.|+..+..
T Consensus 9 ~~~C~~C~~~I~------~~~~v~a--~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVY------FAEKVSS--LGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCC------TTTEEEE--TTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeE------CCeEEEE--CCeEeeCCCC---------CCCCCCCccCC
Confidence 468999999885 2344433 4889999886 69999887643
No 182
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.73 E-value=25 Score=27.64 Aligned_cols=40 Identities=33% Similarity=0.618 Sum_probs=28.5
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|..|-+.+. ..+.+. .-+..||..|. .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~------~~e~v~--a~~~~wH~~CF---------~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLY------VLERLC--VNGHFFHRSCF---------RCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCC------TTTBCC--BTTBCCBTTTC---------BCSSSCCBCCT
T ss_pred CCCCcccCCCcc------cceEEE--ECCCeeCCCcC---------EEcCCCCCcCC
Confidence 458999999885 223333 24889999986 69899877544
No 183
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.42 E-value=25 Score=27.61 Aligned_cols=39 Identities=28% Similarity=0.709 Sum_probs=28.5
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
...|.-|-+.+. .++.+.. -+..||..|. +|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~------~~~~v~a--~~~~wH~~CF---------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIK------HGQSLLA--LDKQWHVSCF---------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCS------SSCCEEE--TTEEECTTTC---------BCSSSCCBCS
T ss_pred CCCCcCcCCeeC------CCeEEEE--CCcccccccC---------CcCcCCCCcC
Confidence 468999999885 2344443 4789999887 6999987653
No 184
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.34 E-value=16 Score=28.04 Aligned_cols=37 Identities=19% Similarity=0.519 Sum_probs=24.7
Q ss_pred cccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 60 LCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 60 ~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
.|+.|-+.+. .+..+... +..||..|. .|-.|+..+.
T Consensus 2 ~C~~C~~~I~------~~~~v~a~--~~~~H~~CF---------~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVY------FAERVTSL--GKDWHRPCL---------KCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCC------GGGEEEET--TEEEETTTC---------BCTTTCCBCC
T ss_pred cCCCCCCEEE------CceEEEEC--CccccCCCC---------CccccCccCC
Confidence 5888888774 23333333 888888876 5888887654
No 185
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=29.17 E-value=10 Score=30.35 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=13.0
Q ss_pred CCCCcccHhHHHHH
Q 009657 84 QCSHAFHFACISSN 97 (529)
Q Consensus 84 ~C~H~FH~~CI~~W 97 (529)
.|+|.|++.|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999999988
No 186
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.22 E-value=31 Score=26.07 Aligned_cols=43 Identities=23% Similarity=0.503 Sum_probs=29.0
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|.-|-+.+. ......+..+ -+..||..|. +|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~----~~~~~~~~~a-~~~~wH~~CF---------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPIS----GLGGTKYISF-EERQWHNDCF---------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCC----CSSSCSCEEC-SSCEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCcCCCcccc----CCCCcceEEE-CCcccCcccC---------EeccCCCcCCC
Confidence 458999999885 1001233333 5899999887 69999887643
No 187
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.80 E-value=29 Score=26.08 Aligned_cols=41 Identities=22% Similarity=0.527 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|.-|-+.+. .+..+.. .-+..||..|. +|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~------~~~~~~~-a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVM------PGSRKLE-YGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCC------SSSCEEC-STTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCCccCCCccc------cCccEEE-ECccccCcccC---------eECCCCCcCCC
Confidence 358999999885 2222322 35889998886 68899877543
No 188
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.95 E-value=31 Score=31.11 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=35.9
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh-CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~-~~~~~CPlCR~~ 111 (529)
+...|++|...|.. -.+....-..|.|.+|..|- .|.. ...-.|=+|+..
T Consensus 67 ~~~~C~~C~~~fg~----l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRL----LLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGG----CSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCcccc----ccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 46799999999862 13345666789999999998 3443 223479999875
No 189
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.43 E-value=18 Score=32.49 Aligned_cols=29 Identities=24% Similarity=0.546 Sum_probs=20.1
Q ss_pred CCCCCcccHhHHHHHhhCCCCcccccccccccCCcC
Q 009657 83 AQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRN 118 (529)
Q Consensus 83 ~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~~p~~ 118 (529)
..|||.|-.. .....||.|..+.+.+|+.
T Consensus 136 ~~Cg~~~~~~-------~~~~~Cp~CG~~~~~~~~~ 164 (165)
T 2lcq_A 136 IGCGRKFSTL-------PPGGVCPDCGSKVKLIPRK 164 (165)
T ss_dssp SSSCCEESSC-------CGGGBCTTTCCBEEECCCC
T ss_pred CCCCCcccCC-------CCCCcCCCCCCcceeCCcC
Confidence 4588888532 1123799999998877764
No 190
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.93 E-value=31 Score=25.89 Aligned_cols=40 Identities=20% Similarity=0.517 Sum_probs=27.6
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
..|..|-+.+. ....+..+ -+..||..|. +|-.|+..+..
T Consensus 6 ~~C~~C~~~I~------~~~~~~~a-~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIM------PGTRKMEY-KGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCC------SSSCEEEE-TTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCccCCCccc------CCceEEEE-CcCeecccCC---------cccccCCccCC
Confidence 58999999885 22222332 4789998887 68899877543
No 191
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=24.11 E-value=24 Score=27.41 Aligned_cols=40 Identities=23% Similarity=0.584 Sum_probs=28.2
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|..|-+.+. .+..+.. -+..||..|. +|-.|+..+..
T Consensus 7 ~~~C~~C~~~I~------~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVY------HAEEVQC--DGRSFHRCCF---------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCS------STTEEEE--TTEEEESSSE---------ECSSSCCEECS
T ss_pred CCcCcCcCcccc------CceeEEe--CCcccccccC---------ccCCCCCCCCC
Confidence 468999999885 2333333 5889998886 68899877543
No 192
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=23.58 E-value=19 Score=26.10 Aligned_cols=42 Identities=19% Similarity=0.513 Sum_probs=27.3
Q ss_pred ccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh--CCCCccccccc
Q 009657 63 ICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR--HGSVTCPICRA 110 (529)
Q Consensus 63 ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~--~~~~~CPlCR~ 110 (529)
||..... ++.-|.=-.|..-||..|+.--.. .....||.|+.
T Consensus 8 ~C~~~~~------~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA------GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT------TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC------CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6765432 234555567999999999974332 23468999975
No 193
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.46 E-value=42 Score=25.08 Aligned_cols=39 Identities=23% Similarity=0.600 Sum_probs=28.0
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|..|-+.+. +..+.. -+..||..|. +|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~-------~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFII-------GRVIKA--MNNSWHPECF---------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCC-------SCCEEE--TTEEECTTTS---------BCSSSCCBCSS
T ss_pred CCcCccCCCEec-------ceEEEE--CcccccccCC---------EeCCCCCcCCC
Confidence 458999999884 233333 4789998887 68899887654
No 194
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.44 E-value=39 Score=26.08 Aligned_cols=41 Identities=22% Similarity=0.503 Sum_probs=28.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|..|-+.+. .++.++.+ -+..||..|. +|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~------~~~~~~~a-~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIV------AGDQNVEY-KGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCC------SSSCEEEC-SSCEEETTTC---------CCSSSCCCCTT
T ss_pred CCcCccCCcccc------cCceEEEE-CccccccccC---------chhhCCCccCC
Confidence 358999999885 22333333 4889998887 58889877543
No 195
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.10 E-value=46 Score=24.97 Aligned_cols=40 Identities=30% Similarity=0.577 Sum_probs=27.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
...|..|-+.+. .......+ -+..||..|. .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~------~~~~~~~a-~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVV------GDGAGVVA-LDRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCC------SSSCCEEC-SSSEECTTTC---------BCSSSCCBCT
T ss_pred CCCCccCCCccC------CCceEEEE-CCCeEcccCC---------cccccCCcCC
Confidence 458999999885 21222222 3789998886 6889988754
No 196
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.99 E-value=74 Score=25.17 Aligned_cols=40 Identities=20% Similarity=0.659 Sum_probs=29.1
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|.-|-+.+. ..+.+ ..-+..||..|. .|-.|...+..
T Consensus 15 ~~~C~~C~~~I~------~~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVY------PMERL--LANQQVFHISCF---------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCC------TTSEE--ECSSSEEETTTC---------BCTTTCCBCCT
T ss_pred CCcCccCCCccC------CceeE--EECCCEECCCCC---------eeCCCCCCCCC
Confidence 468999999985 22333 346889999887 68889877554
No 197
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.93 E-value=42 Score=25.52 Aligned_cols=41 Identities=20% Similarity=0.625 Sum_probs=28.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|+-|-+.+. ....+..+ -+..||..|. +|-.|+..+..
T Consensus 11 ~~~C~~C~~~I~------~~~~~~~a-~~~~~H~~CF---------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFA------PAEKIVNS-NGELYHEQCF---------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCC------STTTCEEE-TTEEECTTTC---------CCTTTCCCCGG
T ss_pred CCCchhcCCccC------CCceEEEe-CccEeccccC---------eECCCCCCCCC
Confidence 468999999885 22333222 3789998886 58888877554
No 198
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.82 E-value=53 Score=26.83 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=22.3
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHH
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSN 97 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~W 97 (529)
++..|.||-.--. +...----|+-.||..|+.+-
T Consensus 14 ~D~~C~VC~~~t~-------~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTA-------ESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCS-------SCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccccc-------cceeccccccccccHhhcccc
Confidence 5789999974211 111112238999999999984
No 199
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.20 E-value=41 Score=29.61 Aligned_cols=51 Identities=22% Similarity=0.451 Sum_probs=34.1
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh---CCCCcccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR---HGSVTCPICRAH 111 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 111 (529)
+...|.+|...|.. -.+....-..|.|.+|..|-..--. ...-.|=+|+..
T Consensus 54 ~~~~C~~C~~~~g~----l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGM----LGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCST----TSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCccc----ccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 45689999999841 1234456678999999999763211 112368899875
No 200
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.18 E-value=39 Score=25.10 Aligned_cols=42 Identities=21% Similarity=0.629 Sum_probs=29.5
Q ss_pred ccccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 57 AKNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 57 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
....|.-|-+.+. .++.+..+ -+..||..|. .|-.|...+..
T Consensus 10 ~~~~C~~C~~~i~------~~e~~~~~-~~~~~H~~CF---------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFA------PAEKIVNS-NGELYHEQCF---------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCC------TTCEEEEE-TTEEEETTTS---------SCTTTCCCCGG
T ss_pred CCccchhcCcccc------CCceEEEe-CcCeeCcCCC---------cccCCCCCCCC
Confidence 3568999999885 23333332 4788998887 58889887654
No 201
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=21.92 E-value=30 Score=27.02 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=31.3
Q ss_pred ccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhh----CCCCcccccccc
Q 009657 59 NLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVR----HGSVTCPICRAH 111 (529)
Q Consensus 59 ~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~----~~~~~CPlCR~~ 111 (529)
..-.||...+. ..+.-|.=-.|.--||..|+.---. .....||.|+..
T Consensus 10 ~~yCiC~~~~~-----~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYCVCRLPYD-----VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEETTTTEECC-----TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEEECCCcCC-----CCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34458887652 1234555567999999999964322 134689999865
No 202
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.88 E-value=56 Score=25.16 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=28.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCccccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQ 114 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~~ 114 (529)
...|.-|-+.+. +..+ ..-+..||..|. +|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~-------~~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIV-------GVFV--KLRDRHRHPECY---------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCC-------SSCE--ECSSCEECTTTT---------SCSSSCCCHHH
T ss_pred CCccccCCCCcc-------CcEE--EECcceeCcCcC---------eeCCCCCCCCC
Confidence 458999999885 2333 235789999987 68899887643
No 203
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.55 E-value=50 Score=30.05 Aligned_cols=45 Identities=22% Similarity=0.660 Sum_probs=30.5
Q ss_pred CccccccccccccccCCCCCCCcceEeC--CCCCcccHhHHHHHhhCCC---------Ccccccc
Q 009657 56 NAKNLCAICLEALSYSSGGSPGQAIFTA--QCSHAFHFACISSNVRHGS---------VTCPICR 109 (529)
Q Consensus 56 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~--~C~H~FH~~CI~~Wl~~~~---------~~CPlCR 109 (529)
..+.-|.||-+. +..+.-- .|...|+..||..++-.+. -.|=+|.
T Consensus 77 G~~~yC~wC~~G---------g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 77 GYQSYCTICCGG---------REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SSBSSCTTTSCC---------SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCcceeeEecCC---------CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 346789999863 3333333 5999999999999986432 2377775
No 204
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=21.29 E-value=35 Score=33.99 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 009657 276 PHLRLLKQSMALVVFSLRPNDRLAIVTYSSA 306 (529)
Q Consensus 276 ~kL~l~K~Am~~vi~~L~~~DrlsIVtFss~ 306 (529)
.-|..+++++...++.|.|+-|++||+|.|=
T Consensus 207 ~EL~~L~~~L~~a~~~L~~gGrl~visfHSL 237 (285)
T 1wg8_A 207 DELNALKEFLEQAAEVLAPGGRLVVIAFHSL 237 (285)
T ss_dssp THHHHHHHHHHHHHHHEEEEEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEecCcH
Confidence 3588999999999999999999999999763
No 205
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.68 E-value=1.3e+02 Score=23.90 Aligned_cols=25 Identities=28% Similarity=0.666 Sum_probs=18.9
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFH 90 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH 90 (529)
...|..|...+. ...+.-.|+..||
T Consensus 25 ~nRC~~CrKkvg--------L~gf~CrCg~~FC 49 (74)
T 1wfl_A 25 KNRCFMCRKKVG--------LTGFDCRCGNLFC 49 (74)
T ss_dssp TTBCSSSCCBCG--------GGCEECTTSCEEC
T ss_pred CCcChhhCCccc--------ccCeecCCCCEec
Confidence 468999988753 4457777999887
No 206
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.44 E-value=36 Score=26.08 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=28.3
Q ss_pred cccccccccccccCCCCCCCcceEeCCCCCcccHhHHHHHhhCCCCcccccccccc
Q 009657 58 KNLCAICLEALSYSSGGSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWT 113 (529)
Q Consensus 58 ~~~C~ICl~~~~~~~~~~~~~~~~~~~C~H~FH~~CI~~Wl~~~~~~CPlCR~~~~ 113 (529)
...|+.|-+.+.. .+....+.. -+..||..|. .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~---~g~~~~~~a--~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISG---LTGAKFICF--QDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCT---TTTCCEEEE--TTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCCccCCCcccC---CCCceeEEE--CCcccCcccC---------ChhhCCCcCC
Confidence 3589999998850 001233333 5889999997 6999987754
No 207
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.44 E-value=27 Score=23.63 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=8.8
Q ss_pred Ccccccccccc
Q 009657 103 VTCPICRAHWT 113 (529)
Q Consensus 103 ~~CPlCR~~~~ 113 (529)
.+||+|.+.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 58999998764
No 208
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=20.33 E-value=36 Score=34.81 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 009657 277 HLRLLKQSMALVVFSLRPNDRLAIVTYSS 305 (529)
Q Consensus 277 kL~l~K~Am~~vi~~L~~~DrlsIVtFss 305 (529)
-|+.+++++...++.|.|+-||+||+|.|
T Consensus 249 EL~~L~~~L~~a~~~L~~gGRl~VISFHS 277 (347)
T 3tka_A 249 ELEEIEQALKSSLNVLAPGGRLSIISFHS 277 (347)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 48899999999999999999999999965
Done!