BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009659
(529 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449463597|ref|XP_004149520.1| PREDICTED: transcription factor PIF5-like [Cucumis sativus]
gi|449505798|ref|XP_004162571.1| PREDICTED: transcription factor PIF5-like [Cucumis sativus]
Length = 550
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 333/561 (59%), Positives = 398/561 (70%), Gaps = 43/561 (7%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMG-QDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPR 59
MN C PDWNFEGDIP + K MG + ++LVELLW+NG VVL Q+Q RK SL NE R
Sbjct: 1 MNYCFPDWNFEGDIPPAK--KSMGPEHDDLVELLWRNGQVVL--QSQKARKSSLIANEVR 56
Query: 60 QVQKQT---LRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEV 116
Q QKQ R + SCGNSSNLIQDDETVSWI P++DSFEK+F S FSELPP+ P+E+
Sbjct: 57 QFQKQNQPLYRSNVSCGNSSNLIQDDETVSWIQDPLDDSFEKEFCSNFFSELPPADPIEI 116
Query: 117 DKH-TRQLREEKMVKFDPPGAVTSSQHPNVNHSV---------VPELQRNAMPPPRFEVH 166
K + +++K +F GA ++ H + V + E N MPPPRF+
Sbjct: 117 VKQPIKHFQDDKQTRF---GAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQ 173
Query: 167 DAAPQNKNLGDLGKLVNFSQSTAPP-KGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGS 225
D++ QNK+LGDLGKLVNFSQ PP KG+LG +G + SGNL QGE R+CS MTVGS
Sbjct: 174 DSSRQNKDLGDLGKLVNFSQVPVPPLKGDLGSSNG---GRESGNLIQGEGRDCSGMTVGS 230
Query: 226 SHCGSNQVAY--DLDMSRASSSGL----------NDDVRKVISPSERGKTETIEPTVTSS 273
SHCGSNQV DLD+SR S+SG +D RK+++ ER KTET++PT TSS
Sbjct: 231 SHCGSNQVPNPNDLDLSRVSTSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSS 290
Query: 274 SGGSGSSFNR--TSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRS 331
SGGSGSS +R T QSTG N KRK RD +SECQSE A ES GNKTA RSGS RR+
Sbjct: 291 SGGSGSSMDRSRTIGQSTGGNGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRT 350
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMG 391
RAAEVHNLSERRRR+RINEKM+ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMG
Sbjct: 351 RAAEVHNLSERRRRERINEKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMG 410
Query: 392 SGMAPLMFPGMQHYMSR--MGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMC 449
SGMAP+MFPG+QHYMSR MGMGM P +PS+ NPM RVP+VDQS+S+A N+ +MC
Sbjct: 411 SGMAPMMFPGVQHYMSRVAMGMGMAQPSMPSIHNPMQLPRVPIVDQSVSVAPTPNQPMMC 470
Query: 450 QASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFG-SPTMQNQIVSLPSS 508
Q + NP+NYQNQMQN EQYAR MGFH MQ SQP+N+FRF S +Q+Q + P
Sbjct: 471 QPQMFNPMNYQNQMQNPALQEQYARLMGFHHMQPTSQPINVFRFCPSAVLQSQPAAAPGP 530
Query: 509 SCVPFSGGAATDNSPLSGKMG 529
+ P +GG+ T N ++G +G
Sbjct: 531 ASGPTAGGSIT-NDIVNGNLG 550
>gi|225446765|ref|XP_002278399.1| PREDICTED: transcription factor PIF5-like [Vitis vinifera]
Length = 531
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 318/543 (58%), Positives = 386/543 (71%), Gaps = 29/543 (5%)
Query: 2 NPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQV 61
+P +PDWN EGD+P++NQ KPMGQ++ELVELLW+NG VVL SQ TQRK L NE +QV
Sbjct: 3 HPLLPDWNIEGDVPVTNQKKPMGQEHELVELLWRNGQVVLHSQ--TQRKSGLAPNESKQV 60
Query: 62 QKQ---TLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDK 118
QK LR GSCGN SNLIQD+E++SWI P++DS +K+F S LF ELPP+ P++ +K
Sbjct: 61 QKHDQTMLRNGGSCGNWSNLIQDEESISWIQYPLDDSLDKEFCSNLFMELPPNDPVQPEK 120
Query: 119 HTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDL 178
R +EK +V SSQ P H PE N MPPP+F+V + QN + G
Sbjct: 121 PVRHSEQEK--------SVPSSQQPIFKHLGSPEFPGNPMPPPKFQVPGSVQQNCSSGGF 172
Query: 179 GKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQG-EVRECSMMTVGSSHCGSNQVAYDL 237
GK+VNF + P + LG Q K SGN+ QG + +E S+MTVG SHCGSNQV +
Sbjct: 173 GKIVNFPNFSFPGRSNLGSSKAQLGGKGSGNMAQGGDAKEGSVMTVGLSHCGSNQVVNEA 232
Query: 238 DMSRASSSGL----------NDDVRKVISPSERGKTETIEPTVTSSSGGSGSS-FNRTSK 286
D+SR SSSG+ ++V +++S +R +TET+EPTVTSSSGG S F RT K
Sbjct: 233 DLSRFSSSGVGTGCLSSGHVKENVMRIVSQGDRRQTETLEPTVTSSSGGGSGSSFGRTYK 292
Query: 287 QSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRD 346
QST NS KRK R+A +SECQSEAA ES A NK +QRSGS RRSRAAEVHNLSERRRRD
Sbjct: 293 QSTDTNSHKRKGREAEESECQSEAAEHESAARNKASQRSGSTRRSRAAEVHNLSERRRRD 352
Query: 347 RINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYM 406
RINEKM+ALQELIPH NK+DKASMLDEAIEYLKSLQLQLQ+MWMG G+AP+MFPG+QHYM
Sbjct: 353 RINEKMKALQELIPHSNKSDKASMLDEAIEYLKSLQLQLQLMWMGGGVAPMMFPGVQHYM 412
Query: 407 SRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNS 466
+RMGMGM PPPLPS+ NPMH RV LVDQS S N+ +CQ VLNPVNYQNQM N
Sbjct: 413 ARMGMGMCPPPLPSIHNPMHLPRVQLVDQSTSAVPPSNQPPICQTPVLNPVNYQNQMPNP 472
Query: 467 NFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAATDNSPLSG 526
NF EQ+A YMGFHPMQ SQPMN+F FGS Q+ ++ P+++ + AA D +P S
Sbjct: 473 NFPEQFAHYMGFHPMQTPSQPMNVFSFGS---QSHPMASPATTGGTPTAAAAVDGAPGS- 528
Query: 527 KMG 529
K+G
Sbjct: 529 KLG 531
>gi|302143504|emb|CBI22065.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 314/533 (58%), Positives = 377/533 (70%), Gaps = 28/533 (5%)
Query: 2 NPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQV 61
+P +PDWN EGD+P++NQ KPMGQ++ELVELLW+NG VVL SQ TQRK L NE +QV
Sbjct: 3 HPLLPDWNIEGDVPVTNQKKPMGQEHELVELLWRNGQVVLHSQ--TQRKSGLAPNESKQV 60
Query: 62 QKQ---TLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDK 118
QK LR GSCGN SNLIQD+E++SWI P++DS +K+F S LF ELPP+ P++ +K
Sbjct: 61 QKHDQTMLRNGGSCGNWSNLIQDEESISWIQYPLDDSLDKEFCSNLFMELPPNDPVQPEK 120
Query: 119 HTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDL 178
R +EK +V SSQ P H PE N MPPP+F+V + QN + G
Sbjct: 121 PVRHSEQEK--------SVPSSQQPIFKHLGSPEFPGNPMPPPKFQVPGSVQQNCSSGGF 172
Query: 179 GKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQG-EVRECSMMTVGSSHCGSNQVAYDL 237
GK+VNF + P + LG Q K SGN+ QG + +E S+MTVG SHCGSNQV +
Sbjct: 173 GKIVNFPNFSFPGRSNLGSSKAQLGGKGSGNMAQGGDAKEGSVMTVGLSHCGSNQVVNEA 232
Query: 238 DMSRASSSGL----------NDDVRKVISPSERGKTETIEPTVTSSSGGSGSS-FNRTSK 286
D+SR SSSG+ ++V +++S +R +TET+EPTVTSSSGG S F RT K
Sbjct: 233 DLSRFSSSGVGTGCLSSGHVKENVMRIVSQGDRRQTETLEPTVTSSSGGGSGSSFGRTYK 292
Query: 287 QSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRD 346
QST NS KRK R+A +SECQSEAA ES A NK +QRSGS RRSRAAEVHNLSERRRRD
Sbjct: 293 QSTDTNSHKRKGREAEESECQSEAAEHESAARNKASQRSGSTRRSRAAEVHNLSERRRRD 352
Query: 347 RINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYM 406
RINEKM+ALQELIPH NK+DKASMLDEAIEYLKSLQLQLQ+MWMG G+AP+MFPG+QHYM
Sbjct: 353 RINEKMKALQELIPHSNKSDKASMLDEAIEYLKSLQLQLQLMWMGGGVAPMMFPGVQHYM 412
Query: 407 SRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNS 466
+RMGMGM PPPLPS+ NPMH RV LVDQS S N+ +CQ VLNPVNYQNQM N
Sbjct: 413 ARMGMGMCPPPLPSIHNPMHLPRVQLVDQSTSAVPPSNQPPICQTPVLNPVNYQNQMPNP 472
Query: 467 NFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAAT 519
NF EQ+A YMGFHPMQ SQPMN+F FGS Q V+ +C + G+ T
Sbjct: 473 NFPEQFAHYMGFHPMQTPSQPMNVFSFGS---QTSWVNTSGYACCSNAFGSIT 522
>gi|356553623|ref|XP_003545154.1| PREDICTED: transcription factor PIF5-like [Glycine max]
Length = 562
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 290/562 (51%), Positives = 361/562 (64%), Gaps = 38/562 (6%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
M IP +FE D ++NQ K +G D ELVELLWQNG VV QT RKP N + RQ
Sbjct: 1 MKNSIPGLDFESDACLTNQRKLIGPDQELVELLWQNGQVV--RHNQTHRKPLGNSSNLRQ 58
Query: 61 VQK---QTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVD 117
QK TLR SG GNSSNL Q++ T WI P+ED E+DF S L SELPP+ E
Sbjct: 59 AQKTDHSTLRSSGPYGNSSNLDQEEAT-PWIQFPLEDPLEQDFCSNLLSELPPTCEFESY 117
Query: 118 KHTRQLREEKMVKF----DPPGAVTSSQHP---NVNHSVVPELQRNA--MPPPRFEVHDA 168
K +QL E+K F P TSS P N+ S V +Q N MP PRF V D+
Sbjct: 118 KPIKQLEEDKFTNFFASSTPHHPTTSSSKPLPPNMTSSWVQRIQGNPNPMPAPRFHVPDS 177
Query: 169 APQNKNLGDLGKLVNFSQSTAPPKG-ELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSH 227
+ ++ +LG K++NF + P P S QF K + NL+Q E RE S++TVGSSH
Sbjct: 178 SQKDNDLGASRKVLNFPHFSTPRNNVSSAPGSTQFREKTTANLSQSEAREYSVITVGSSH 237
Query: 228 CGSNQVAYDLDMSRASSSGL----------------NDDVRKVISP-SERGKTETIEPTV 270
CGS+ + + D+SR SSS + D V++ I P S++GK+E IEPTV
Sbjct: 238 CGSSHIPQEKDVSRVSSSAVWATNNNNSLSAEPEAVRDCVQRPICPRSDKGKSEMIEPTV 297
Query: 271 TSSSGGSGSSFN-RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCR 329
TSSSGGSGS+ RT ST D+ KRK + SE QSEA +S GNK +QR+GS +
Sbjct: 298 TSSSGGSGSTGIGRTCSLSTRDHGQKRKGTEEEASEEQSEATELKSADGNKASQRTGSSK 357
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMW 389
R+RAAEVHN SERRRRDRINEKMR LQ+LIP+ NKTDKASML+EAIEYLKSLQ QLQVMW
Sbjct: 358 RNRAAEVHNQSERRRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMW 417
Query: 390 MGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMC 449
MGSGM P+MFPG+QHYMS+MGMGMG P LPS+ NPM +VP DQ+MS+ Q N+ +MC
Sbjct: 418 MGSGMTPVMFPGIQHYMSQMGMGMGAPSLPSIYNPMQLPKVPH-DQAMSVPQMPNQNLMC 476
Query: 450 QASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQ--IVSLPS 507
Q VL NYQ MQN EQYA YMG+H M++ SQPMN+FR+GS +Q+ +++ +
Sbjct: 477 QNQVLGAFNYQTHMQNPCLPEQYAPYMGYHFMRSASQPMNVFRYGSQAVQHSQTMIAPGN 536
Query: 508 SSCVPFSGGAATDNSPLSGKMG 529
+S P SG A D++ +SGK G
Sbjct: 537 NSSGPMSGTANIDDA-VSGKAG 557
>gi|356501423|ref|XP_003519524.1| PREDICTED: transcription factor PIF4-like [Glycine max]
Length = 562
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 289/563 (51%), Positives = 356/563 (63%), Gaps = 40/563 (7%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN IP W+FE D ++NQ K +G D ELVELLW+NG VV+ +Q T RK N + RQ
Sbjct: 1 MNNSIPGWDFESDTCLTNQRKLIGPDQELVELLWKNGQVVMHNQ--THRKTLGNSSNLRQ 58
Query: 61 VQKQ---TLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVD 117
VQK LR SG GNSSNL Q+D W+ P+ED E+DF S L SELP + E
Sbjct: 59 VQKSDQSVLRSSGPYGNSSNLDQED-AAPWVQFPLEDPLEQDFCSNLLSELP-TCEFESY 116
Query: 118 KHTRQLREEKMVKFDPPGA----VTSSQHP---NVNHSVVPELQRNA--MPPPRFEVHDA 168
K RQL EEK KF G TSS P N+ S + LQ N MP PRF D+
Sbjct: 117 KPIRQLEEEKFAKFFASGTPHHPTTSSSQPLPPNMKPSCIQGLQGNPIPMPAPRFHGPDS 176
Query: 169 APQNKNLGDLGKLVNFSQSTAPPKG-ELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSH 227
+ + + G K++NF Q + P P QF K + N++Q E RE S++TVGSSH
Sbjct: 177 SQKIHDFGASRKVLNFPQFSTPRNNVPSAPGITQFREKTTANMSQSEAREYSVITVGSSH 236
Query: 228 CGSNQVAYDLDMSRASSSGL-----------------NDDVRKVISP-SERGKTETIEPT 269
CGSN + + D+SR SS+G+ D V++ I P S +GK+E IE T
Sbjct: 237 CGSNHIPQEQDVSRISSTGVWATTNNNTTLSAEPEAVRDYVQRPICPKSGQGKSEMIELT 296
Query: 270 VTSSSGGSGSSFN-RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSC 328
VTSSSGGSGS+ RT ST D+ KRK + E QSE +S GNK +QR+ S
Sbjct: 297 VTSSSGGSGSTGIGRTCSLSTRDHGQKRKGTEEEALEEQSEDTELKSADGNKASQRTRSS 356
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
RR+RAAEVHN SERRRRDRINEKMR LQ+LIP+ NKTDKASML+EAIEYLKSLQ QLQVM
Sbjct: 357 RRNRAAEVHNQSERRRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVM 416
Query: 389 WMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVM 448
WMG GM P+MFPG+QHYMS+MGMGMG P LPS+ NPM +VP DQ+MS+ Q N+ +M
Sbjct: 417 WMGGGMTPVMFPGIQHYMSQMGMGMGAPSLPSIHNPMQLPKVPH-DQAMSVLQIPNQNLM 475
Query: 449 CQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQ--IVSLP 506
CQ VL NYQNQMQN EQYARYMG+H MQ SQPMN+FR+GS +Q+ +++
Sbjct: 476 CQNPVLGAFNYQNQMQNPCLPEQYARYMGYHLMQNASQPMNVFRYGSQAVQHSQTMIAPG 535
Query: 507 SSSCVPFSGGAATDNSPLSGKMG 529
++S P SG A D++ SGK G
Sbjct: 536 NNSSGPMSGTANIDDAD-SGKAG 557
>gi|224082612|ref|XP_002306764.1| predicted protein [Populus trichocarpa]
gi|222856213|gb|EEE93760.1| predicted protein [Populus trichocarpa]
Length = 380
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 250/390 (64%), Positives = 290/390 (74%), Gaps = 28/390 (7%)
Query: 158 MPPPRFEVHDAAPQNKNLGDLGKLVN--FSQSTAPPKG-ELGPCSGQFDRKRSGNLTQGE 214
MPPPR +V + + +G G+ VN FSQ +AP KG + SGQF + SGN QGE
Sbjct: 1 MPPPRIQVPEK--NHAGVGGFGEAVNANFSQFSAPFKGGDFRTSSGQFGGQGSGNSPQGE 58
Query: 215 VRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLN-----------DDVRKVISPSERGKT 263
VRECS++TVGSS NQ+ +D DMSRASS+ + DD RK++S SERGKT
Sbjct: 59 VRECSVVTVGSS----NQIPHDRDMSRASSNAMGTSTAFSTGPSMDDPRKIVSQSERGKT 114
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTG-DNSLKRKSRDAVDSECQSEAA--GFESGAGNK 320
ET+E T+T+SSGGSGSSF RT KQS G +S KRK+ D DSE QSEAA +S AGN
Sbjct: 115 ETLEATLTTSSGGSGSSFGRTCKQSAGPSSSQKRKTIDTEDSEYQSEAAELDLDSMAGNN 174
Query: 321 TAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKS 380
+RSGS RRSRAAEVHNLSERRRRDRINEKMRALQELIPHC KTDKASMLDEAIEYLKS
Sbjct: 175 PTKRSGSTRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCYKTDKASMLDEAIEYLKS 234
Query: 381 LQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMA 440
LQLQLQVMWMG GMAP++FPG+QH+MSRMGMG PPLPS+ NPMH RV L+DQS+SMA
Sbjct: 235 LQLQLQVMWMGGGMAPMLFPGVQHFMSRMGMG---PPLPSMQNPMHLPRVQLIDQSISMA 291
Query: 441 QAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTM-Q 499
QN VMCQA VLNPVN+ NQMQN F +QYAR+MGFH MQA SQPMNMFRFGS T+ Q
Sbjct: 292 PTQNSGVMCQAPVLNPVNFHNQMQNPAFADQYARFMGFH-MQAASQPMNMFRFGSQTVQQ 350
Query: 500 NQIVSLPSSSCVPFSGGAATDNSPLSGKMG 529
NQ+++ SS P S G A ++P S K+G
Sbjct: 351 NQMMAPTSSVGGPLSAGTAVSDAPPSDKVG 380
>gi|356567480|ref|XP_003551947.1| PREDICTED: transcription factor PIF5-like [Glycine max]
Length = 397
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 212/386 (54%), Positives = 267/386 (69%), Gaps = 16/386 (4%)
Query: 158 MPPPRFEVHDAAPQNKN-LGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVR 216
+P PRF V D+ +N N LG K+ NFS +AP + F K +GN+++ E+R
Sbjct: 14 IPAPRFHVSDSPQKNNNDLGGSCKVQNFSHFSAPLNVSSASANAHFRDKITGNMSKNEIR 73
Query: 217 ECSMMTVGSSHCGSNQVAYDLDMSRASSSGL------------NDDVRKVISPSERGKTE 264
ECS+MTVGSS+CGSN + D D SRASS+G+ D V + +E+GK+E
Sbjct: 74 ECSLMTVGSSYCGSNHIPQDPDASRASSNGVWTTTLSAEPEAVRDHVPRTSPQNEKGKSE 133
Query: 265 TIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQR 324
+EPT TSSSGGSGSS + ST + KRK D +SE QSE +S GNK++QR
Sbjct: 134 MLEPTTTSSSGGSGSSLGKNCSLSTRNQGQKRKGIDVEESEEQSEDTELKSALGNKSSQR 193
Query: 325 SGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQ 384
+G RR+RAAEVHNLSERRRRDRINEKM+ALQ+LIPH +KTDKASML+EAIEYLKSLQLQ
Sbjct: 194 AGLARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQ 253
Query: 385 LQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQN 444
LQ+MWMGSGMAP+MFPG+QHYMS+MGMGM PP P + NPM R+PL DQS+S +Q N
Sbjct: 254 LQLMWMGSGMAPIMFPGIQHYMSQMGMGMATPPFPPIHNPMQLPRLPL-DQSVSASQTPN 312
Query: 445 RAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQN-QIV 503
+ +M Q +L NY NQMQN +EQYARYMG+H MQ SQPMN+FR+G +++ Q +
Sbjct: 313 QTLMSQNPILGAFNYHNQMQNPALSEQYARYMGYHLMQNASQPMNVFRYGPQGVRHSQTM 372
Query: 504 SLPSSSCVPFSGGAATDNSPLSGKMG 529
PS+S SG A D + +SGKMG
Sbjct: 373 ITPSNSSGNMSGAANIDEA-VSGKMG 397
>gi|224066527|ref|XP_002302124.1| predicted protein [Populus trichocarpa]
gi|222843850|gb|EEE81397.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/233 (75%), Positives = 196/233 (84%), Gaps = 4/233 (1%)
Query: 300 DAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELI 359
DA +SECQSE A +S NK A+RSGS RRSRAAEVHNLSERRRRDRINEKMRALQELI
Sbjct: 2 DAEESECQSEDAELDSAVANKPAKRSGSTRRSRAAEVHNLSERRRRDRINEKMRALQELI 61
Query: 360 PHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSR--MGMGMGPPP 417
PHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG+ P+MFPG+QH+MSR MGMGMGPPP
Sbjct: 62 PHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGIVPVMFPGVQHFMSRMGMGMGMGPPP 121
Query: 418 LPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMG 477
LPS+ NPMH RVPLVDQS+SM QN+AV+CQ VLNPVNYQNQMQN F++QYAR+MG
Sbjct: 122 LPSMQNPMHLPRVPLVDQSISMTPTQNQAVICQTPVLNPVNYQNQMQNPTFSDQYARFMG 181
Query: 478 FHPMQANSQPMNMFRFGSPTM-QNQIVSLPSSSCVPFSGGAATDNSPLSGKMG 529
FH MQA SQPMNMFRFGS T+ QNQ+++ P+S P S G A ++P SGK G
Sbjct: 182 FH-MQAASQPMNMFRFGSQTVQQNQMMAPPNSGGGPLSAGTAASDAPPSGKTG 233
>gi|356526934|ref|XP_003532070.1| PREDICTED: transcription factor PIF5-like [Glycine max]
Length = 266
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 166/266 (62%), Positives = 200/266 (75%), Gaps = 3/266 (1%)
Query: 266 IEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRS 325
+EP VTSSSGGSGSS +T ST + KRK D +SE QSE +S GNK++QR+
Sbjct: 2 LEPAVTSSSGGSGSSLGKTCSLSTRNQGQKRKGIDVEESEEQSEDTELKSALGNKSSQRT 61
Query: 326 GSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL 385
GS RR+RAAEVHNLSERRRRDRINEKM+ALQ+LIPH +KTDKASML+EAIEYLKSLQLQL
Sbjct: 62 GSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQL 121
Query: 386 QVMWMGSGMAPLMFPGMQHYMSRMGMGMG-PPPLPSVTNPMHFSRVPLVDQSMSMAQAQN 444
Q+MWMGSGMAP+MFPG+QHYMS+MGMGM PP P + NPM RVPL D+S+S +Q N
Sbjct: 122 QLMWMGSGMAPIMFPGIQHYMSQMGMGMARPPFPPPIHNPMQLPRVPL-DKSVSASQTPN 180
Query: 445 RAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQN-QIV 503
+ +MCQ +L NYQNQMQN +EQY RYMG+H MQ SQPMN+FR+G +Q+ Q +
Sbjct: 181 QTLMCQNPILGAFNYQNQMQNPALSEQYVRYMGYHLMQNASQPMNVFRYGPQGVQHSQTM 240
Query: 504 SLPSSSCVPFSGGAATDNSPLSGKMG 529
PSS+ GAA + +SGKMG
Sbjct: 241 ITPSSNSSGNMSGAANIDEAVSGKMG 266
>gi|115489518|ref|NP_001067246.1| Os12g0610200 [Oryza sativa Japonica Group]
gi|77556567|gb|ABA99363.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|108862946|gb|ABA99364.2| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113649753|dbj|BAF30265.1| Os12g0610200 [Oryza sativa Japonica Group]
gi|125537356|gb|EAY83844.1| hypothetical protein OsI_39060 [Oryza sativa Indica Group]
gi|215694924|dbj|BAG90115.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 445
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 176/437 (40%), Positives = 224/437 (51%), Gaps = 90/437 (20%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDWN + + P+G+D+ LVELLW NGHVV+ SQA RKP PR
Sbjct: 1 MNQFVPDWN---TTSMGDGFAPLGEDDGLVELLWCNGHVVMQSQAP--RKP------PRP 49
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHT 120
+K T ++ + +DE+ SW P++D EKD +++LF E+ +G D
Sbjct: 50 -EKTTA-------AAAAAMAEDESASWFQYPVDDVLEKDLFTELFGEMTAAGGGGGDVRR 101
Query: 121 RQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGK 180
+EE+ GAV + Q MPPP A GD+
Sbjct: 102 AACKEER-------GAVAA-------------FQSRMMPPPW-----PARGKAEFGDVDD 136
Query: 181 LVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQV------A 234
+ S+ K G V E SM+T+GSS CGSN V
Sbjct: 137 VCGVSEVVMA--------------KMDGAAAAETVGESSMLTIGSSICGSNHVQTPPVGN 182
Query: 235 YDLDMSRASSSGLNDDVRKVISPSERGK--TETIEPTVTSSSGGSGSSFNRTSKQSTGDN 292
A ++ D V S S R + T EP +++G G
Sbjct: 183 GKAGAGTAGAARRAHDTATVASSSMRSRSCTAKAEPRDVAAAGVGG-------------- 228
Query: 293 SLKRKSRD--AVDSECQSEAAGFESGAGNKT-AQRSGSCRRSRAAEVHNLSERRRRDRIN 349
KRK R A++S SE FES A + AQ++ + +R RAAEVHNLSERRRRDRIN
Sbjct: 229 --KRKQRGGAAMESGSPSEDVEFESAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRIN 286
Query: 350 EKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP--LMFP--GMQHY 405
EKM+ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ+MWMG GMAP +MFP G+ Y
Sbjct: 287 EKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGGGMAPPAVMFPAAGVHQY 346
Query: 406 MSRMG-MGMGPPPLPSV 421
M RMG +GMGPP + S+
Sbjct: 347 MQRMGAVGMGPPHMASL 363
>gi|108862947|gb|ABA99362.2| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 446
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 176/437 (40%), Positives = 224/437 (51%), Gaps = 90/437 (20%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDWN + + P+G+D+ LVELLW NGHVV+ SQA RKP PR
Sbjct: 1 MNQFVPDWN---TTSMGDGFAPLGEDDGLVELLWCNGHVVMQSQAP--RKP------PRP 49
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHT 120
+K T ++ + +DE+ SW P++D EKD +++LF E+ +G D
Sbjct: 50 -EKTTA-------AAAAAMAEDESASWFQYPVDDVLEKDLFTELFGEMTAAGGGGGDVRR 101
Query: 121 RQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGK 180
+EE+ GAV + Q MPPP A GD+
Sbjct: 102 AACKEER-------GAVAA-------------FQSRMMPPPW-----PARGKAEFGDVDD 136
Query: 181 LVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQV------A 234
+ S+ K G V E SM+T+GSS CGSN V
Sbjct: 137 VCGVSEVVMA--------------KMDGAAAAETVGESSMLTIGSSICGSNHVQTPPVGN 182
Query: 235 YDLDMSRASSSGLNDDVRKVISPSERGK--TETIEPTVTSSSGGSGSSFNRTSKQSTGDN 292
A ++ D V S S R + T EP +++G G
Sbjct: 183 GKAGAGTAGAARRAHDTATVASSSMRSRSCTAKAEPRDVAAAGVGG-------------- 228
Query: 293 SLKRKSRD--AVDSECQSEAAGFESGAGNKT-AQRSGSCRRSRAAEVHNLSERRRRDRIN 349
KRK R A++S SE FES A + AQ++ + +R RAAEVHNLSERRRRDRIN
Sbjct: 229 --KRKQRGGAAMESGSPSEDVEFESAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRIN 286
Query: 350 EKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP--LMFP--GMQHY 405
EKM+ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ+MWMG GMAP +MFP G+ Y
Sbjct: 287 EKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGGGMAPPAVMFPAAGVHQY 346
Query: 406 MSRMG-MGMGPPPLPSV 421
M RMG +GMGPP + S+
Sbjct: 347 MQRMGAVGMGPPHMASL 363
>gi|218187227|gb|EEC69654.1| hypothetical protein OsI_39066 [Oryza sativa Indica Group]
Length = 469
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 175/431 (40%), Positives = 227/431 (52%), Gaps = 69/431 (16%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDWN + + P+G+D+ LVELLW NGHVV+ Q+QT RKP PR
Sbjct: 1 MNQFVPDWN---TTSMGDGFAPLGEDDGLVELLWCNGHVVM--QSQTPRKP------PRP 49
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHT 120
+ ++ + +DE+ SW P++D EKD +++LF E+ +G + D
Sbjct: 50 ER------------AAAAMAEDESASWFQYPVDDVLEKDLFTELFGEMTAAGGVGGDARR 97
Query: 121 RQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGK 180
+EE+ GAV + Q MPPP A GD+
Sbjct: 98 AACKEER-------GAVAA-------------FQSRMMPPPW-----PARGKAEFGDVDD 132
Query: 181 LVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMS 240
+ S E+ + K + V E SM+T+GSS CGSN V +
Sbjct: 133 VCGVS--------EVVMAKMDGEAKVAAVAAAEAVGESSMLTIGSSICGSNHVQTPAAGA 184
Query: 241 RASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSL--KRKS 298
G N + + R +T TV SSS S S +T + KRK
Sbjct: 185 APPPVG-NGKAGAAAAAAARRARDTA--TVASSSMRSRSCAAKTEPRDVAAAGAGGKRKQ 241
Query: 299 RDA--VDSECQSEAAGFESGAGNKT-AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRAL 355
R A ++S SE FES A + AQ++ + +R RAAEVHNLSERRRRDRINEKM+AL
Sbjct: 242 RGAAAMESGSPSEDVEFESAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEKMKAL 301
Query: 356 QELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP--LMFP--GMQHYMSRMG- 410
QELIPHCNKTDKASMLDEAIEYLKSLQLQLQ+MWMG GMAP +MFP G+ YM RMG
Sbjct: 302 QELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGGGMAPRAVMFPAAGVHQYMQRMGA 361
Query: 411 MGMGPPPLPSV 421
+GMGPP + S+
Sbjct: 362 VGMGPPHMASL 372
>gi|108710019|gb|ABF97814.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 481
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 175/434 (40%), Positives = 212/434 (48%), Gaps = 65/434 (14%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDW+ GD + +G+D+ L+ELLW NGHVV+ SQ ++ P PR
Sbjct: 1 MNQFVPDWSNMGDA-----SRTLGEDDNLIELLWCNGHVVMQSQNHHRKLP------PRP 49
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHT 120
+K ++ +Q+DE W + DS EKD +S LF E P + E
Sbjct: 50 PEKA----------AAAAVQEDEAGLWFPFALADSLEKDIFSDLFYEAPVAATAEAAPAG 99
Query: 121 RQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPP--------RFEVHDAAPQN 172
+ K G ++ E R MPPP R + A
Sbjct: 100 PGAGADGEGKTCK-GDAAMAEEERGGPGAASEAPRELMPPPKSTNASCSRQQTMSLADGG 158
Query: 173 KNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQ 232
N GDL +LV +S+ G RK G + +GSS CGSNQ
Sbjct: 159 DNAGDLSELVRARRSSG----------GAARRKAEAGGGGGGASSSMLSAIGSSICGSNQ 208
Query: 233 VAYDLDMSRASSSGLNDDVRKVISPSERGKTETI------------EPTVTSSSGGSGSS 280
V + AS G R+ PS G I TV SSSG S
Sbjct: 209 V--QVQQRTASEPG-----RRGAPPSAVGSANAIPCGGRDHGHGHEATTVASSSGRSNCC 261
Query: 281 FNRTSKQSTG---DNSLKRKSRDAV-DSECQSEAAGFESGA-GNKTAQRSGSCRRSRAAE 335
F T+ + S KRK D DSE SE A ES A K + + RRSRAAE
Sbjct: 262 FGTTTTTEPTSTSNRSSKRKRLDTTEDSESPSEDAESESAALARKPPAKMTTARRSRAAE 321
Query: 336 VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA 395
VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ+MWMGSGMA
Sbjct: 322 VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGSGMA 381
Query: 396 -PLMFPGMQHYMSR 408
P+MFPG+ Y+ R
Sbjct: 382 PPVMFPGVHQYLPR 395
>gi|108710018|gb|ABF97813.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 485
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 176/437 (40%), Positives = 210/437 (48%), Gaps = 71/437 (16%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDW+ GD + +G+D+ L+ELLW NGHVV+ SQ ++ P PR
Sbjct: 1 MNQFVPDWSNMGDA-----SRTLGEDDNLIELLWCNGHVVMQSQNHHRKLP------PRP 49
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLF---SELPPSGPMEVD 117
+K ++ +Q+DE W + DS EKD +S LF +
Sbjct: 50 PEKA----------AAAAVQEDEAGLWFPFALADSLEKDIFSDLFYEAPVAATAEAAPAG 99
Query: 118 KHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPP--------RFEVHDAA 169
E K K D A P E R MPPP R + A
Sbjct: 100 PGAGADGEGKTCKGDAAMAEEERGGPGA----ASEAPRELMPPPKSTNASCSRQQTMSLA 155
Query: 170 PQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCG 229
N GDL +LV +S+ G RK G + +GSS CG
Sbjct: 156 DGGDNAGDLSELVRARRSSG----------GAARRKAEAGGGGGGASSSMLSAIGSSICG 205
Query: 230 SNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETI------------EPTVTSSSGGS 277
SNQV + AS G R+ PS G I TV SSSG S
Sbjct: 206 SNQV--QVQQRTASEPG-----RRGAPPSAVGSANAIPCGGRDHGHGHEATTVASSSGRS 258
Query: 278 GSSFNRTSKQSTG---DNSLKRKSRDAV-DSECQSEAAGFESGA-GNKTAQRSGSCRRSR 332
F T+ + S KRK D DSE SE A ES A K + + RRSR
Sbjct: 259 NCCFGTTTTTEPTSTSNRSSKRKRLDTTEDSESPSEDAESESAALARKPPAKMTTARRSR 318
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGS 392
AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ+MWMGS
Sbjct: 319 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGS 378
Query: 393 GMA-PLMFPGMQHYMSR 408
GMA P+MFPG+ Y+ R
Sbjct: 379 GMAPPVMFPGVHQYLPR 395
>gi|326528369|dbj|BAJ93366.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 488
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 173/443 (39%), Positives = 221/443 (49%), Gaps = 80/443 (18%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
M+ +PDW GDI +P+G+D++L+ELLW NG+VV+ SQ + P P +
Sbjct: 1 MSQFVPDWGNMGDI-----SRPLGEDDDLMELLWCNGNVVMQSQGHRKLPP-----RPEK 50
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHT 120
V + ++Q+DE W + DS +KD ++ LF E PP G VD
Sbjct: 51 VP------------APAVVQEDEAGLWFPFALADSLDKDIFTDLFCEEPP-GAAVVDGAG 97
Query: 121 RQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPR-FEVH---DAAPQNKNLG 176
+ R + G V + S +L MPPP+ H + Q+ +L
Sbjct: 98 KAGRGDGAPLL---GDVDGRSSQSSAVSAASDL----MPPPKSTHTHVSCSSRQQSMSLA 150
Query: 177 DLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYD 236
D G G SG + R+G E ++ +G+S CGSNQV
Sbjct: 151 DCGDNAG------------GVVSG-LVQARAGKAAMEEGASSTLSAIGASFCGSNQVQVQ 197
Query: 237 LDMS-------------RASSSGLNDDVRKV-ISPSERGKTETIEPTVTSSSGGSGSSFN 282
+S R + S L V + S RG E TV SSSG S F
Sbjct: 198 GAVSEQGRAGHTTVYGGRGAGSALPSAVGSGNANASGRGH----EATVASSSGRSNYCFG 253
Query: 283 RTSKQ----------STGDNSLKRK-SRDAVDSECQSEAAGFESGA-GNKTAQRSGSCRR 330
+ ST + S KRK D DSE SE A ES A K Q+ + RR
Sbjct: 254 AAATTTTTTTGTEPTSTSNRSSKRKRGLDTEDSESPSEDAESESLALDRKPPQKLTTARR 313
Query: 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
SRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLK+LQ+Q+Q+MWM
Sbjct: 314 SRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKTLQMQVQMMWM 373
Query: 391 GSGMA---PLMFPGMQHYMSRMG 410
G GMA +MFPGM Y+ +MG
Sbjct: 374 GGGMAAPPAVMFPGMHQYLPQMG 396
>gi|125545009|gb|EAY91148.1| hypothetical protein OsI_12756 [Oryza sativa Indica Group]
Length = 469
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 171/429 (39%), Positives = 207/429 (48%), Gaps = 74/429 (17%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDW+ GD + +G+D+ L+ELLW NGHVV+ SQ ++ P PR
Sbjct: 1 MNQFVPDWSNMGDAS-----RTLGEDDNLIELLWCNGHVVMQSQNHHRKLP------PRP 49
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHT 120
+K ++ +Q+DE W + DS EKD +S LF E P +
Sbjct: 50 PEKAA---------AAAAVQEDEAGLWFPFALADSLEKDIFSDLFYEAPVAATAAAAPAG 100
Query: 121 RQLR---EEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGD 177
E K K D + + E +R P + A N GD
Sbjct: 101 PGAGADGEGKTCKGD---------------AAMAEEERGG-PGAAQQTMSLADGGDNAGD 144
Query: 178 LGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDL 237
L +LV +S+ G RK G + +GSS CGSNQV +
Sbjct: 145 LSELVRARRSSG----------GAVRRKAEAGGGGGGASSSMLSAIGSSICGSNQV--QV 192
Query: 238 DMSRASSSGLNDDVRKVISPSERGKTETI------------EPTVTSSSGGSGSSFNRTS 285
AS G R+ PS G I TV SSSG S F +
Sbjct: 193 QQRTASEPG-----RRGAPPSAVGSANAIPCGGRDHGHGHEATTVASSSGRSNCCFGTNT 247
Query: 286 KQSTGD---NSLKRKSRDAV-DSECQSEAAGFESGA-GNKTAQRSGSCRRSRAAEVHNLS 340
S KRK D DSE SE A ES A K + + RRSRAAEVHNLS
Sbjct: 248 TTEPTSTSNRSSKRKRLDTTEDSESPSEDAESESAALARKPPAKMTTARRSRAAEVHNLS 307
Query: 341 ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA-PLMF 399
ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ+MWMGSGMA P+MF
Sbjct: 308 ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGSGMAPPVMF 367
Query: 400 PGMQHYMSR 408
PG+ Y+ R
Sbjct: 368 PGVHQYLPR 376
>gi|357113061|ref|XP_003558323.1| PREDICTED: transcription factor PIF5-like [Brachypodium distachyon]
Length = 418
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 140/222 (63%), Gaps = 12/222 (5%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRA 354
KRK R DS+ +SE A FE+ K+++R GS RRSRAAEVHN SERRRRDRINEKMR+
Sbjct: 198 KRKGRGRDDSDSRSEDAEFEATEETKSSRRHGSKRRSRAAEVHNQSERRRRDRINEKMRS 257
Query: 355 LQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMG 414
LQELIPHCNK DKAS+LDEAIEYLKSLQ+QLQ+MWM +GMAP+MFPG +M M MGM
Sbjct: 258 LQELIPHCNKADKASILDEAIEYLKSLQMQLQIMWMTTGMAPMMFPGAHQFMPPMAMGMN 317
Query: 415 PPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYAR 474
+P+ SRVP ++ S+ N M + +NP+ NQMQN + E
Sbjct: 318 SACMPAAQGLNQMSRVPFINHSLP-----NHIPMNSSPAMNPMYVANQMQNIHLREASNH 372
Query: 475 YMGFHPMQANSQPMNMFRFGSPTM-QNQIVSLPSSSCVPFSG 515
+ Q Q + + S QNQI +P S+ VP SG
Sbjct: 373 F------QVAPQVTGPYAYASQVAQQNQIPEVPDSTVVPTSG 408
>gi|326487850|dbj|BAJ89764.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508951|dbj|BAJ86868.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 396
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 164/298 (55%), Gaps = 22/298 (7%)
Query: 223 VGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFN 282
+GS+ CGSNQV R S +P G +SS G +
Sbjct: 106 IGSTFCGSNQVPEVPAGGREEGSA---------APPSEGTRGASTRGTSSSGGSGSNFGG 156
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
+G KRK R DS+ +SE E+ K+++R GS RRSRAAEVHN SER
Sbjct: 157 SGLPSESGGRVHKRKGRGKDDSDSRSEDVECEATEETKSSRRHGSKRRSRAAEVHNQSER 216
Query: 343 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGM 402
RRRDRINEKMR+LQELIPHCNK DKAS+LDEAIEYLKSLQ+Q+QVMWM SGMAP+MFPG
Sbjct: 217 RRRDRINEKMRSLQELIPHCNKADKASILDEAIEYLKSLQMQVQVMWMTSGMAPMMFPGS 276
Query: 403 QHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQ 462
+M M +GM LP+ +RVP ++ ++S N M + +NP+ NQ
Sbjct: 277 HQFMPPMAVGMNSACLPAAQGLNQMARVPYMNHTLS-----NHIPMNPSPAMNPMYVANQ 331
Query: 463 MQNSNFTEQYARYMGFHP---MQANSQPMNMFRFGSPTM--QNQIVSLPSSSCVPFSG 515
MQN E ++ HP + Q + + +P + +NQI +P + VP SG
Sbjct: 332 MQNIQLREASNHFL--HPDGGLATAPQVAGPYAY-TPQVAPKNQIPEVPDCTVVPTSG 386
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 30/92 (32%)
Query: 17 SNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSS 76
+N KP+ DN+LVELLW NG VV +Q QT +P+ G ++
Sbjct: 9 ANHKKPLAADNDLVELLWHNGAVV--AQPQTHPRPAPG------------------GETA 48
Query: 77 NLIQDDETVSWIHCPIEDSFEKDFYSQLFSEL 108
QDD D D Y+QL+ +
Sbjct: 49 AWFQDD----------VDVLGNDVYAQLWHNI 70
>gi|326505558|dbj|BAJ95450.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 164/298 (55%), Gaps = 22/298 (7%)
Query: 223 VGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFN 282
+GS+ CGSNQV R S +P G +SS G +
Sbjct: 97 IGSTFCGSNQVPEVPAGGREEGSA---------APPSEGTRGASTRGTSSSGGSGSNFGG 147
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
+G KRK R DS+ +SE E+ K+++R GS RRSRAAEVHN SER
Sbjct: 148 SGLPSESGGRVHKRKGRGKDDSDSRSEDVECEATEETKSSRRHGSKRRSRAAEVHNQSER 207
Query: 343 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGM 402
RRRDRINEKMR+LQELIPHCNK DKAS+LDEAIEYLKSLQ+Q+QVMWM SGMAP+MFPG
Sbjct: 208 RRRDRINEKMRSLQELIPHCNKADKASILDEAIEYLKSLQMQVQVMWMTSGMAPMMFPGS 267
Query: 403 QHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQ 462
+M M +GM LP+ +RVP ++ ++S N M + +NP+ NQ
Sbjct: 268 HQFMPPMAVGMNSACLPAAQGLNQMARVPYMNHTLS-----NHIPMNPSPAMNPMYVANQ 322
Query: 463 MQNSNFTEQYARYMGFHP---MQANSQPMNMFRFGSPTM--QNQIVSLPSSSCVPFSG 515
MQN E ++ HP + Q + + +P + +NQI +P + VP SG
Sbjct: 323 MQNIQLREASNHFL--HPDGGLATAPQVAGPYAY-TPQVAPKNQIPEVPDCTVVPTSG 377
>gi|357115750|ref|XP_003559649.1| PREDICTED: transcription factor PIF1-like [Brachypodium distachyon]
Length = 445
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 207/401 (51%), Gaps = 75/401 (18%)
Query: 21 KPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSNLIQ 80
+P+G D++L+ELLW NGHVV+ Q+QT RK P + +K ++ ++Q
Sbjct: 6 RPLGVDDDLMELLWCNGHVVM--QSQTHRK------LPPRPEKAA--------AAAAVMQ 49
Query: 81 DDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAVTSS 140
+DE W DS +KD +S LF E P + +K D G
Sbjct: 50 EDEAGLWFPFSHADSLDKDIFSDLFCEAVP--------------QAVGIKPDCYG----- 90
Query: 141 QHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPPKGELGPCSG 200
+ N S + MPPP+ + D L DL + + ++ A + G +
Sbjct: 91 ---DGNGSKSSDAPSELMPPPKSTMADGG----ELSDLVQARSTGKAAAAAMEQEGASAS 143
Query: 201 QFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSER 260
F G+ Q +V+ H G Q A + SS+ L V I+ + R
Sbjct: 144 SF----CGSSNQVQVQ----------HAGRVQSAG--TAAYGSSARLQSAVGSGINANGR 187
Query: 261 GKTETIEPTVTSSSGGSGSSFNRTSKQSTGD------NSLKRK---SRDAVDSECQSEAA 311
G+ E TV SSSG S F T+ ST +S KRK SR SE SE A
Sbjct: 188 GR----EATVASSSGRSNGCFTNTTTTSTEPTSASLRSSSKRKRLDSRTEDYSESPSEDA 243
Query: 312 GFESGA--GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKAS 369
ES A K + + RRSRAAEVHNLSERRRRDRINEKM+ALQELIPHCNKTDKAS
Sbjct: 244 ESESLALIERKPPLKLPTARRSRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKAS 303
Query: 370 MLDEAIEYLKSLQLQLQVMWMGSGMAP--LMFPGMQHYMSR 408
MLDEAIEYLK+LQ+Q+Q+MWMGSGMAP +MFPGM Y+ R
Sbjct: 304 MLDEAIEYLKTLQMQVQMMWMGSGMAPPAVMFPGMHQYLPR 344
>gi|108711402|gb|ABF99197.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 421
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 145/227 (63%), Gaps = 14/227 (6%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTA-QRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KRK R+ DS+ +SE A E+ K++ +R GS RR+RAAEVHNLSERRRRDRINEKMR
Sbjct: 195 KRKGRE--DSDSRSEDAECEATEETKSSSRRYGSKRRTRAAEVHNLSERRRRDRINEKMR 252
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQELIPHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM +GMAP+MFPG +M M +GM
Sbjct: 253 ALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGMAPMMFPGAHQFMPPMAVGM 312
Query: 414 GPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYA 473
+P+ H SR+P ++ SM N + + +NP+N NQMQN E
Sbjct: 313 NSACMPAAQGLSHMSRLPYMNHSMP-----NHIPLNSSPAMNPMNVANQMQNIQLREASN 367
Query: 474 RYMGFHPMQANSQPMNM---FRFG-SPTMQNQIVSLPSSSCVPFSGG 516
++ HP + P + + G QNQI +S+ +P SG
Sbjct: 368 PFL--HPDGWQTVPPQVSGPYASGPQVAQQNQIPKASASTVLPNSGA 412
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Query: 17 SNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSS 76
+NQ K + DNELVELLW NG VV +P+ Q + + SG ++S
Sbjct: 9 ANQTKQIVTDNELVELLWHNGGVVA---------------QPQAAQARVVSSSGRGQSAS 53
Query: 77 NLIQDD-ETVSWIHCPIEDSFEKDFYSQLF 105
L DD ET +W ++D+ EKD Y+QL+
Sbjct: 54 VLTGDDTETAAWFPDTLDDALEKDLYTQLW 83
>gi|115455729|ref|NP_001051465.1| Os03g0782500 [Oryza sativa Japonica Group]
gi|108711401|gb|ABF99196.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|108711403|gb|ABF99198.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113549936|dbj|BAF13379.1| Os03g0782500 [Oryza sativa Japonica Group]
gi|215740666|dbj|BAG97322.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 410
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 145/227 (63%), Gaps = 14/227 (6%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTA-QRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KRK R+ DS+ +SE A E+ K++ +R GS RR+RAAEVHNLSERRRRDRINEKMR
Sbjct: 184 KRKGRE--DSDSRSEDAECEATEETKSSSRRYGSKRRTRAAEVHNLSERRRRDRINEKMR 241
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQELIPHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM +GMAP+MFPG +M M +GM
Sbjct: 242 ALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGMAPMMFPGAHQFMPPMAVGM 301
Query: 414 GPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYA 473
+P+ H SR+P ++ SM N + + +NP+N NQMQN E
Sbjct: 302 NSACMPAAQGLSHMSRLPYMNHSMP-----NHIPLNSSPAMNPMNVANQMQNIQLREASN 356
Query: 474 RYMGFHPMQANSQPMNM---FRFG-SPTMQNQIVSLPSSSCVPFSGG 516
++ HP + P + + G QNQI +S+ +P SG
Sbjct: 357 PFL--HPDGWQTVPPQVSGPYASGPQVAQQNQIPKASASTVLPNSGA 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 16/81 (19%)
Query: 26 DNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSNLIQDD-ET 84
DNELVELLW NG VV +P+ Q + + SG ++S L DD ET
Sbjct: 7 DNELVELLWHNGGVVA---------------QPQAAQARVVSSSGRGQSASVLTGDDTET 51
Query: 85 VSWIHCPIEDSFEKDFYSQLF 105
+W ++D+ EKD Y+QL+
Sbjct: 52 AAWFPDTLDDALEKDLYTQLW 72
>gi|297824267|ref|XP_002880016.1| hypothetical protein ARALYDRAFT_483401 [Arabidopsis lyrata subsp.
lyrata]
gi|297325855|gb|EFH56275.1| hypothetical protein ARALYDRAFT_483401 [Arabidopsis lyrata subsp.
lyrata]
Length = 422
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 136/298 (45%), Positives = 182/298 (61%), Gaps = 43/298 (14%)
Query: 207 SGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETI 266
S + + E+ + S T+G SHCGSN D D S + N + + ++P+
Sbjct: 144 SSGIRETEMEQYSETTIGPSHCGSNPSQNDFDASMSQDRSKN--IEEKLNPN-------- 193
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSL--KRKSRDAVDSECQSEAAGFESGAGNKTAQR 324
+SS G SG SF + K+ S+ RK + +D++ ++ GNK+ QR
Sbjct: 194 --ASSSSGGSSGCSFGKDIKEMACGRSITTDRKRKHIMDTD---DSVSLSDVIGNKSNQR 248
Query: 325 SGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQ 384
SGS RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDKAS+LDEAI+YLKSLQLQ
Sbjct: 249 SGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQ 308
Query: 385 LQVMWMGSGM--APLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQA 442
LQVMWMGSGM AP+MFPG+Q PP + + +P+ R P++++S A
Sbjct: 309 LQVMWMGSGMAAAPMMFPGVQ----------PPPFIRQMQSPVQLPRFPVMERS---AIQ 355
Query: 443 QNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP-MQANSQPMNMFRFGSPTMQ 499
N ++CQ NP+ QN ++++ARY+G P MQA +QPM M RFGSP Q
Sbjct: 356 NNPGLVCQ----NPI------QNQIISDRFARYIGGFPQMQAAAQPMEMLRFGSPAGQ 403
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query: 8 WNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLR 67
W+FE + +S + + ++LVELLW++G VVL SQ H E Q QKQ
Sbjct: 6 WSFEENYSLSTNRRSIRPQDDLVELLWRDGQVVLQSQT---------HREQTQTQKQDHH 56
Query: 68 GSGSCGNSSNLIQDDETVSWI-HCPIEDSFE-KDFYSQLFSELPP 110
N ++D ETVSWI + P ED FE DF S FS + P
Sbjct: 57 EGTQRSNI--FLEDQETVSWIQYPPDEDPFETDDFSSHFFSTVDP 99
>gi|297744279|emb|CBI37249.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 147/420 (35%), Positives = 197/420 (46%), Gaps = 90/420 (21%)
Query: 1 MNPCIPDWNF--EGDIPISNQMK--PMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHN 56
MN C+PD+ E IP++ K M +D+E++ELLWQNG VV+ Q Q K S
Sbjct: 1 MNHCVPDFEVDDEDAIPLTRPKKSAAMVEDDEIMELLWQNGQVVMQIQNQRSFKKSQPSK 60
Query: 57 EPRQ-----VQKQTLRGSGSCGNSSN--LIQDDETVSWIHCPIEDSFEKDFYSQLFSELP 109
P Q ++ +R S SS +Q+DE SW+H P++ DF + L P
Sbjct: 61 FPIQDAVLPPEQSKIRSSAPVDESSAQLFMQEDEMASWLHYPLD-----DFCADLLDPTP 115
Query: 110 PSGPMEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVV-PELQRNAMPPPRFEVHDA 168
V PP A PN++ V PE + A PP
Sbjct: 116 ------------------CVNASPPPA-----RPNLSPDVRQPEERPAATKPP------- 145
Query: 169 APQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMM--TVGSS 226
P + + K+ NF F RK + + + M TV ++
Sbjct: 146 IPPARRVELDSKVHNFL---------------HFPRKSTAESGEPSSSRPAGMESTVAAT 190
Query: 227 HCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSK 286
++L M+ + S + EPT + + +R K
Sbjct: 191 SAAGEHTTFELTMTSSPEGSG----------SGGSASAGAEPTPKAPAD------DRKRK 234
Query: 287 QSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRD 346
GD++ +E QSE FES K + S + +RSRAAEVHNLSERRRRD
Sbjct: 235 GREGDDT----------AEYQSEDVEFESADAKKQVRGSATAKRSRAAEVHNLSERRRRD 284
Query: 347 RINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYM 406
RINEKM+ALQELIP CNK+DKASMLDEAIEYLKSLQLQ+Q+M MG M P+M+PG+Q YM
Sbjct: 285 RINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMYPGVQQYM 344
>gi|222625912|gb|EEE60044.1| hypothetical protein OsJ_12829 [Oryza sativa Japonica Group]
Length = 489
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 125/177 (70%), Gaps = 8/177 (4%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTA-QRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KRK R+ DS+ +SE A E+ K++ +R GS RR+RAAEVHNLSERRRRDRINEKMR
Sbjct: 284 KRKGRE--DSDSRSEDAECEATEETKSSSRRYGSKRRTRAAEVHNLSERRRRDRINEKMR 341
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQELIPHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM +GMAP+MFPG +M M +GM
Sbjct: 342 ALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGMAPMMFPGAHQFMPPMAVGM 401
Query: 414 GPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTE 470
+P+ H SR+P ++ SM N + + +NP+N NQMQN E
Sbjct: 402 NSACMPAAQGLSHMSRLPYMNHSMP-----NHIPLNSSPAMNPMNVANQMQNIQLRE 453
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 16/81 (19%)
Query: 26 DNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSNLIQDD-ET 84
DNELVELLW NG VV +P+ Q + + SG ++S L DD ET
Sbjct: 107 DNELVELLWHNGGVVA---------------QPQAAQARVVSSSGRGQSASVLTGDDTET 151
Query: 85 VSWIHCPIEDSFEKDFYSQLF 105
+W ++D+ EKD Y+QL+
Sbjct: 152 AAWFPDTLDDALEKDLYTQLW 172
>gi|218193849|gb|EEC76276.1| hypothetical protein OsI_13762 [Oryza sativa Indica Group]
Length = 505
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 125/177 (70%), Gaps = 8/177 (4%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTA-QRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KRK R+ DS+ +SE A E+ K++ +R GS RR+RAAEVHNLSERRRRDRINEKMR
Sbjct: 300 KRKGRE--DSDSRSEDAECEATEETKSSSRRYGSKRRTRAAEVHNLSERRRRDRINEKMR 357
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQELIPHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM +GMAP+MFPG +M M +GM
Sbjct: 358 ALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGMAPMMFPGAHQFMPPMAVGM 417
Query: 414 GPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTE 470
+P+ H SR+P ++ SM N + + +NP+N NQMQN E
Sbjct: 418 NSACMPAAQGLSHMSRLPYMNHSMP-----NHIPLNSSPAMNPMNVANQMQNIQLRE 469
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Query: 17 SNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSS 76
+NQ K + DNELVELLW NG VV +P+ Q + + SG ++S
Sbjct: 114 ANQTKQIVTDNELVELLWHNGGVVA---------------QPQAAQARVVSSSGRGQSAS 158
Query: 77 NLIQDD-ETVSWIHCPIEDSFEKDFYSQLF 105
L DD ET +W ++D+ EKD Y+QL+
Sbjct: 159 VLTGDDTETAAWFPDTLDDALEKDLYTQLW 188
>gi|20127070|gb|AAM10954.1|AF488598_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 442
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/317 (44%), Positives = 188/317 (59%), Gaps = 55/317 (17%)
Query: 219 SMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSG 278
S++TVG SHCGSNQ S+ ++ +S S+R K E TSS G SG
Sbjct: 146 SVITVGPSHCGSNQ-----------STNIHQATTLPVSMSDRSKN-VEERLDTSSGGSSG 193
Query: 279 SSFNRTSKQSTGDNS--LKRKSRDAVDSECQSEA---AGFESG----AGNKTAQRSGSCR 329
S+ R +K++ S + RK + +D++ +S + G S GNK++QRSGS R
Sbjct: 194 CSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTR 253
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMW 389
RSRAAEVHNLSERRRRDRINE+M+ALQELIPHC++TDKAS+LDEAI+YLKSLQ+QLQVMW
Sbjct: 254 RSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMW 313
Query: 390 MGSGM--------APLMFPGMQH--YMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSM 439
MGSGM +P+MFPG+Q Y+++M M + M S+ P++++S
Sbjct: 314 MGSGMAAAAAAAASPMMFPGVQSSPYINQMAM----------QSQMQLSQFPVMNRS--- 360
Query: 440 AQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQ-------ANSQPMNMFR 492
A + ++C LNPV Q Q QN +EQ ARYMG P QP +M
Sbjct: 361 APQNHPGLVC----LNPVQLQLQAQNQILSEQLARYMGGIPQMPPAGNQTVQQQPADMLG 416
Query: 493 FGSPTMQNQIVSLPSSS 509
FGSP +S P+++
Sbjct: 417 FGSPAGPQSQLSAPATT 433
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
M DWNFE + +S + + ++ELVELLW++G VVL SQA +R+PS+ +Q
Sbjct: 1 MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQA--RREPSVQVQTHKQ 58
Query: 61 VQKQTLRGSGSC--GNSSNL-------IQDDETVSWIHCPIEDSFE 97
+TLR + N + + D ETVSWI P +D +
Sbjct: 59 ---ETLRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPDDVID 101
>gi|30694919|ref|NP_851021.1| transcription factor PIF5 [Arabidopsis thaliana]
gi|7529749|emb|CAB86934.1| putative protein [Arabidopsis thaliana]
gi|332646347|gb|AEE79868.1| transcription factor PIF5 [Arabidopsis thaliana]
Length = 442
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 140/317 (44%), Positives = 188/317 (59%), Gaps = 55/317 (17%)
Query: 219 SMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSG 278
S++TVG SHCGSNQ S+ ++ +S S+R K E TSS G SG
Sbjct: 146 SVITVGPSHCGSNQ-----------STNIHQATTLPVSMSDRSKN-VEERLDTSSGGSSG 193
Query: 279 SSFNRTSKQSTGDNS--LKRKSRDAVDSECQSEA---AGFESG----AGNKTAQRSGSCR 329
S+ R +K++ S + RK + +D++ +S + G S GNK++QRSGS R
Sbjct: 194 CSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTR 253
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMW 389
RSRAAEVHNLSERRRRDRINE+M+ALQELIPHC++TDKAS+LDEAI+YLKSLQ+QLQVMW
Sbjct: 254 RSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMW 313
Query: 390 MGSGM--------APLMFPGMQH--YMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSM 439
MGSGM +P+MFPG+Q Y+++M M + M S+ P++++S
Sbjct: 314 MGSGMAAAAAAAASPMMFPGVQSSPYINQMAM----------QSQMQLSQFPVMNRS--- 360
Query: 440 AQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQ-------ANSQPMNMFR 492
A + ++CQ NPV Q Q QN +EQ ARYMG P QP +M
Sbjct: 361 APQNHPGLVCQ----NPVQLQLQAQNQILSEQLARYMGGIPQMPPAGNQTVQQQPADMLG 416
Query: 493 FGSPTMQNQIVSLPSSS 509
FGSP +S P+++
Sbjct: 417 FGSPAGPQSQLSAPATT 433
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
M DWNFE + +S + + ++ELVELLW++G VVL SQA +R+PS+ +Q
Sbjct: 1 MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQA--RREPSVQVQTHKQ 58
Query: 61 VQKQTLRGSGSC--GNSSNL-------IQDDETVSWIHCPIEDSFE 97
+TLR + N + + D ETVSWI P +D +
Sbjct: 59 ---ETLRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPDDVID 101
>gi|30694924|ref|NP_191465.3| transcription factor PIF5 [Arabidopsis thaliana]
gi|79315658|ref|NP_001030889.1| transcription factor PIF5 [Arabidopsis thaliana]
gi|79315685|ref|NP_001030890.1| transcription factor PIF5 [Arabidopsis thaliana]
gi|75297820|sp|Q84LH8.1|PIF5_ARATH RecName: Full=Transcription factor PIF5; AltName: Full=Basic
helix-loop-helix protein 65; Short=AtbHLH65; Short=bHLH
65; AltName: Full=Phytochrome interacting factor-like 6;
AltName: Full=Phytochrome-interacting factor 5; AltName:
Full=Transcription factor EN 103; AltName: Full=bHLH
transcription factor bHLH065
gi|28372349|dbj|BAC56978.1| PIF3 like basic Helix Loop Helix protein [Arabidopsis thaliana]
gi|222424174|dbj|BAH20046.1| AT3G59060 [Arabidopsis thaliana]
gi|225898729|dbj|BAH30495.1| hypothetical protein [Arabidopsis thaliana]
gi|332646348|gb|AEE79869.1| transcription factor PIF5 [Arabidopsis thaliana]
gi|332646349|gb|AEE79870.1| transcription factor PIF5 [Arabidopsis thaliana]
gi|332646350|gb|AEE79871.1| transcription factor PIF5 [Arabidopsis thaliana]
Length = 444
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 142/319 (44%), Positives = 190/319 (59%), Gaps = 57/319 (17%)
Query: 219 SMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSG 278
S++TVG SHCGSNQ S+ ++ +S S+R K E TSS G SG
Sbjct: 146 SVITVGPSHCGSNQ-----------STNIHQATTLPVSMSDRSKN-VEERLDTSSGGSSG 193
Query: 279 SSFNRTSKQSTGDNS--LKRKSRDAVDSECQSEA---AGFESG----AGNKTAQRSGSCR 329
S+ R +K++ S + RK + +D++ +S + G S GNK++QRSGS R
Sbjct: 194 CSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTR 253
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMW 389
RSRAAEVHNLSERRRRDRINE+M+ALQELIPHC++TDKAS+LDEAI+YLKSLQ+QLQVMW
Sbjct: 254 RSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMW 313
Query: 390 MGSGM--------APLMFPGMQH--YMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSM 439
MGSGM +P+MFPG+Q Y+++M M + M S+ P++++S
Sbjct: 314 MGSGMAAAAAAAASPMMFPGVQSSPYINQMAM----------QSQMQLSQFPVMNRS--- 360
Query: 440 AQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP--------MQ-ANSQPMNM 490
A + ++CQ NPV Q Q QN +EQ ARYMG P MQ QP +M
Sbjct: 361 APQNHPGLVCQ----NPVQLQLQAQNQILSEQLARYMGGIPQMPPAGNQMQTVQQQPADM 416
Query: 491 FRFGSPTMQNQIVSLPSSS 509
FGSP +S P+++
Sbjct: 417 LGFGSPAGPQSQLSAPATT 435
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
M DWNFE + +S + + ++ELVELLW++G VVL SQA +R+PS+ +Q
Sbjct: 1 MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQA--RREPSVQVQTHKQ 58
Query: 61 VQKQTLRGSGSC--GNSSNL-------IQDDETVSWIHCPIEDSFE 97
+TLR + N + + D ETVSWI P +D +
Sbjct: 59 ---ETLRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPDDVID 101
>gi|359480088|ref|XP_002263397.2| PREDICTED: transcription factor PIF1-like [Vitis vinifera]
Length = 517
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 145/420 (34%), Positives = 204/420 (48%), Gaps = 52/420 (12%)
Query: 1 MNPCIPDWNF--EGDIPISNQMK--PMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHN 56
MN C+PD+ E IP++ K M +D+E++ELLWQNG VV+ Q Q K S
Sbjct: 1 MNHCVPDFEVDDEDAIPLTRPKKSAAMVEDDEIMELLWQNGQVVMQIQNQRSFKKSQPSK 60
Query: 57 EPRQ-----VQKQTLRGSGSCGNSSN--LIQDDETVSWIHCPIEDSFEKDFY--SQLFSE 107
P Q ++ +R S SS +Q+DE SW+H P++D F D + +
Sbjct: 61 FPIQDAVLPPEQSKIRSSAPVDESSAQLFMQEDEMASWLHYPLDD-FCADLLDPTPCVNA 119
Query: 108 LPPSGPMEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHD 167
PP + RQ EE+ PP + ++ ++ V N + PR +
Sbjct: 120 SPPPARPNLSPDVRQ-PEERPAATKPP--IPPARRVELDSKV-----HNFLHFPRKSTAE 171
Query: 168 AA-PQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSS 226
+ P + + V S T G C Q R + E+ T+G
Sbjct: 172 SGEPSSSRPAGMESTVVDSSDTP------GVC--QQSRTSPAEWCKAELANSGYGTIG-- 221
Query: 227 HCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSK 286
G+ + A S++G + ++ S G + + + +R K
Sbjct: 222 --GATEAA-------TSAAGEHTTFELTMTSSPEGSGSGGSASAGAEPTPKAPADDRKRK 272
Query: 287 QSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRD 346
GD++ + +S D FES K + S + +RSRAAEVHNLSERRRRD
Sbjct: 273 GREGDDTAEYQSED----------VEFESADAKKQVRGSATAKRSRAAEVHNLSERRRRD 322
Query: 347 RINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYM 406
RINEKM+ALQELIP CNK+DKASMLDEAIEYLKSLQLQ+Q+M MG M P+M+PG+Q YM
Sbjct: 323 RINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMYPGVQQYM 382
>gi|242038745|ref|XP_002466767.1| hypothetical protein SORBIDRAFT_01g013843 [Sorghum bicolor]
gi|241920621|gb|EER93765.1| hypothetical protein SORBIDRAFT_01g013843 [Sorghum bicolor]
Length = 535
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 159/286 (55%), Gaps = 45/286 (15%)
Query: 220 MMTVGSSHCGSNQVAYDLDMS---RASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGG 276
+ +GSS CGSNQV + RAS SG + RG SSSG
Sbjct: 209 LSAIGSSICGSNQVLVQRAVGAPGRASGSGSGTANANAMG-GGRGNE-------ASSSGR 260
Query: 277 SGSSFNRTSKQST----------GDNSLKRKSRDAVDSECQSEAAGFESGA--GNKTAQR 324
S F + +T + S KRK D DSE SE A ES A K Q+
Sbjct: 261 STYCFGTATTTTTTTTTTEPTSTSNRSSKRKRLDTEDSESPSEDAESESAAMLARKPPQK 320
Query: 325 SGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQ 384
+ RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQ
Sbjct: 321 MTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQ 380
Query: 385 LQVMWMGSGMA---PLMFPGMQHYMSRMGMGMGP-PPLPSVTNPMHFSRVPLVDQSMSMA 440
+Q+MWMGSG+A +MFPG+ Y+SRMG+GMGP +PS+ R+P +
Sbjct: 381 VQMMWMGSGIAAPPAVMFPGVHQYLSRMGVGMGPAAAMPSMP------RLPFM------- 427
Query: 441 QAQNRAVMCQASVLNPV----NYQNQMQNSNFTEQYARYMGFHPMQ 482
A + V+ + +NPV + + E Y Y+G + +Q
Sbjct: 428 -AAPQPVVPPNAQVNPVPGYRGHHHMPAAVGMAEPYGHYLGVNHLQ 472
>gi|414873163|tpg|DAA51720.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 523
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 165/301 (54%), Gaps = 21/301 (6%)
Query: 223 VGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFN 282
+ S+ CGSNQV R + L ++ PS G + + S S G
Sbjct: 224 ICSTFCGSNQVLRTPARIRGKDAALQSEL-----PSNTGAHDGTSSSGGSGSNYGGFGLP 278
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAG-NKTAQRSGSCRRSRAAEVHNLSE 341
S KRK R DS+ SE A E + K ++R G+ RR+RAAEVHNLSE
Sbjct: 279 SDSVHVQ-----KRKGRCRDDSDSPSEDAECEEASEETKPSRRYGTKRRTRAAEVHNLSE 333
Query: 342 RRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPG 401
RRRRDRINEKMRALQELIPHCNKTDKAS+LDE IEYLKSLQ+Q+Q+MWM SGMAP+MFPG
Sbjct: 334 RRRRDRINEKMRALQELIPHCNKTDKASILDETIEYLKSLQMQVQIMWMTSGMAPMMFPG 393
Query: 402 MQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQN 461
+ ++ +M +GM P +P+ R+P ++ ++ N + +++NP+N N
Sbjct: 394 VHQFIPQMALGMNPGCIPAAQGLSQMPRLPYMNHTLPNHIHLNSSPAM--NLMNPLNAAN 451
Query: 462 QMQNSNFTEQYARYMGFHPMQANSQP--------MNMFRFGSPTMQNQIVSLPSSSCVPF 513
Q+Q + + + + +A P ++ + N+I+ + +S+ +P
Sbjct: 452 QVQIGHLRDASSHLLHLDGGRAAVVPQVPGPGPHVHGHQIAQAEEHNKILEVAASTVIPT 511
Query: 514 S 514
S
Sbjct: 512 S 512
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 16/89 (17%)
Query: 17 SNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSS 76
+NQ KP+ D++LVELLW NG VV QA + P+ + + P G+ G
Sbjct: 111 TNQKKPVVADDDLVELLWHNGSVVAQPQAHQRPAPTYDPDRP-----------GTSG--- 156
Query: 77 NLIQDDETVSWIHCPIEDSFEKDFYSQLF 105
+ +ET +W ++D+ EKD Y+QL+
Sbjct: 157 --LTGEETAAWFPDTLDDALEKDLYTQLW 183
>gi|312283297|dbj|BAJ34514.1| unnamed protein product [Thellungiella halophila]
Length = 448
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 128/285 (44%), Positives = 171/285 (60%), Gaps = 53/285 (18%)
Query: 218 CSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGS 277
S++TVG SHCGSNQ D ++ +S S+R K +E + +SSGGS
Sbjct: 149 TSVLTVGPSHCGSNQSTNDHQVTHPP-----------VSISDRSKN--VEERLDTSSGGS 195
Query: 278 GSSFNRTSKQSTGDN---SLKRKSRDAVDSECQSEAAG-------FESGAGNKTAQRSGS 327
+ + TG ++ RK + +D++ +S + + GNK++QRSGS
Sbjct: 196 SGCSYGRNNKETGSGRSVTIDRKRKHVMDTDQESVSQSDVRLMSMEDQAIGNKSSQRSGS 255
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDKAS+LDEAI+YLKSLQ+QLQV
Sbjct: 256 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQMQLQV 315
Query: 388 MWMGSGM---------APLMFPGMQH--YMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQS 436
MWMGSGM P+MFPG+Q Y+++M M + M S+ P++++S
Sbjct: 316 MWMGSGMAAAAAAAASTPMMFPGVQQSPYINQMAM----------QSQMQLSQFPVMNRS 365
Query: 437 MSMAQAQNR-AVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP 480
+ QN ++CQ NPV Q Q QN +EQ ARYMG P
Sbjct: 366 V----VQNHPGLVCQ----NPVQLQMQAQNQILSEQLARYMGGFP 402
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSL-----NH 55
M PDWNFE + +S + + ++ELVELLW++G VVL SQA +R+PS+ H
Sbjct: 1 MEQLFPDWNFEENFHMSTNKRSIRPEDELVELLWRDGQVVLQSQA--RREPSVQVQAHKH 58
Query: 56 NEPRQVQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFE 97
++ TL + + +++D ETVSWI P ED +
Sbjct: 59 DQTLGKPNNTLLDNQVRKPNGTILEDQETVSWIQYPPEDVVD 100
>gi|30689224|ref|NP_850381.1| transcription factor PIF4 [Arabidopsis thaliana]
gi|330255104|gb|AEC10198.1| transcription factor PIF4 [Arabidopsis thaliana]
Length = 428
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 177/322 (54%), Gaps = 45/322 (13%)
Query: 207 SGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETI 266
S + + E+ + S+ TVG SHCGSN DLD+S + N + + ++P+ +
Sbjct: 145 SSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMSHDRSKN--IEEKLNPNASSSSGGS 202
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG 326
+S + T D KRK + D E+ GNK+ QRSG
Sbjct: 203 SGCSFGKDIKEMAS----GRCITTDR--KRKRINHTD-----ESVSLSDAIGNKSNQRSG 251
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDKAS+LDEAI+YLKSLQLQLQ
Sbjct: 252 SNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 311
Query: 387 VMW------MGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMA 440
VMW + AP+MFPG+Q + + +P+ R P++DQS A
Sbjct: 312 VMWMGSGMAAAAASAPMMFPGVQPQQF----------IRQIQSPVQLPRFPVMDQS---A 358
Query: 441 QAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP-MQANSQPMNMFRFGSPTMQ 499
N ++CQ NPV QN ++++ARY+G P MQA +QPM M RF SP Q
Sbjct: 359 IQNNPGLVCQ----NPV------QNQIISDRFARYIGGFPHMQAATQPMEMLRFSSPAGQ 408
Query: 500 NQIVSLPSSSCVPFSGGAATDN 521
PSS + G+ D+
Sbjct: 409 QS--QQPSSVPTKTTDGSRLDH 428
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 8 WNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLR 67
W+FE + +S + + +ELVELLW++G VVL SQ H E Q QKQ
Sbjct: 6 WSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQT---------HREQTQTQKQD-- 54
Query: 68 GSGSCGNSSNLIQDDETVSWI-HCPIEDSFE-KDFYSQLFSELPP 110
SS ++D ETVSWI + P ED FE DF S FS + P
Sbjct: 55 HHEEALRSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMDP 99
>gi|297820750|ref|XP_002878258.1| phytochrome-interacting factor 5 [Arabidopsis lyrata subsp. lyrata]
gi|297324096|gb|EFH54517.1| phytochrome-interacting factor 5 [Arabidopsis lyrata subsp. lyrata]
Length = 439
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 185/316 (58%), Gaps = 54/316 (17%)
Query: 219 SMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSG 278
S++ G SHCGSNQ S+ ++ +S S+R K E TSS G SG
Sbjct: 144 SVIKDGPSHCGSNQ-----------STNIHQVTTLPVSMSDRSKN-VEERLDTSSGGSSG 191
Query: 279 SSFNRTSKQSTGDNS--LKRKSRDAVDSECQSEA---AGFES----GAGNKTAQRSGSCR 329
S+ + +K++ S + RK + +D++ +S + G S GNK++QRSGS R
Sbjct: 192 CSYGKNNKETVSGRSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQAMGNKSSQRSGSTR 251
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMW 389
RSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDKAS+LDEAI+YLKSLQ+QLQVMW
Sbjct: 252 RSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQMQLQVMW 311
Query: 390 MGSGM--------APLMFPGMQH--YMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSM 439
MGSGM P+MFPG+Q Y+++M M + M + P++++S
Sbjct: 312 MGSGMAAAAAAATTPMMFPGVQSSPYINQMAM----------QSQMQLPQFPVMNRS--- 358
Query: 440 AQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPM------QANSQPMNMFRF 493
A + ++CQ PV +Q Q QN +EQ ARYMG P QA P +M F
Sbjct: 359 APQNHPGLVCQT----PVQFQLQTQNQILSEQLARYMGGFPQMSLAANQAVQPPADMLGF 414
Query: 494 GSPTMQNQIVSLPSSS 509
GSP +S P+++
Sbjct: 415 GSPAGPQSQLSAPATT 430
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 9/115 (7%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
M DWNFE + +S + +++LVELLW++G VVL SQA +R+PS+ ++
Sbjct: 1 MEQVFADWNFEDNFHMSTNKRSTRPEDDLVELLWRDGQVVLQSQA--RREPSVQTHKQES 58
Query: 61 VQKQT---LRGSGSCGNSSN-LIQDDETVSWIHCP---IEDSFEKDFYSQLFSEL 108
++K L + SN ++QD ETVSWI+ P + D FE + S FS +
Sbjct: 59 LRKPNNIFLDNQETVQKPSNSVLQDQETVSWINYPPDDVIDPFESELSSHFFSSI 113
>gi|357119457|ref|XP_003561456.1| PREDICTED: transcription factor PIF1-like [Brachypodium distachyon]
Length = 334
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 166/309 (53%), Gaps = 18/309 (5%)
Query: 216 RECSMMTVGSSHC-GSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSS 274
R CS G+S G A L L + + I+ ++ + +
Sbjct: 23 RRCSQSGAGASGVTGEGDAAAWLAPDGGGGRDLYSQLWRSIADADGAGAFVAGSSSRTGE 82
Query: 275 GGSGSSF---NRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRS 331
+GSSF N S + G L ++ RD +D +A E+ +T++R RR+
Sbjct: 83 AAAGSSFCGSNAASSAAGGHALLLKRGRDELDDSRCEDADDCEAVDETRTSRRPAGKRRA 142
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMG 391
RAAEVHN SERRRRDRINEKM+ALQEL+PHCNK+DKAS+LDEAIEYLKSLQLQ+Q+MWM
Sbjct: 143 RAAEVHNQSERRRRDRINEKMKALQELVPHCNKSDKASILDEAIEYLKSLQLQVQIMWMT 202
Query: 392 SGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRV-PLVDQSMSMAQAQNRAVMCQ 450
+GMAP+MFPG M +M MG+ P +P+ + RV P ++ + N+ Q
Sbjct: 203 TGMAPMMFPGAHQLMPQMAMGLNPACMPTAQSLSQLQRVAPFMNNPLP-----NQMPQVQ 257
Query: 451 ASVLNPVNYQNQMQNSNFTEQYARYMGFHP---MQANSQPMNMFRFGSP-TMQNQIVSLP 506
+ N NQM N E ++ HP + A +Q MF +GS QN+I L
Sbjct: 258 PPATDFPNVSNQMPNDGVCEPTNPFL--HPNDTLAAATQ--GMFSYGSQRAQQNEIHELM 313
Query: 507 SSSCVPFSG 515
+S+ +P SG
Sbjct: 314 ASTAIPASG 322
>gi|414871802|tpg|DAA50359.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 562
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 157/301 (52%), Gaps = 51/301 (16%)
Query: 214 EVRECSMMT-VGSSHCGSNQVAYDLDM---SRASSSG----LNDDVRKVISPSERGKTET 265
E SM++ +GSS CGSNQV RAS+SG D PS G
Sbjct: 190 EAGASSMLSAIGSSICGSNQVLVQRAACAPGRASASGSGTARGDGSGSAALPSAVGSANA 249
Query: 266 IEPTVTSSSGGSGSSFNRTS-----------------KQSTGDNSLKRKSRDAVDSECQS 308
V G SS R++ ST + S KRK D DSE S
Sbjct: 250 N--AVGGGRGHEASSSGRSNYCCFGAATTTTTTTTTEPASTSNRSSKRKRLDTEDSESPS 307
Query: 309 EAAGFESGA--GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 366
E A S A K Q+ + RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD
Sbjct: 308 EDAESGSAAMLARKPPQKMTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 367
Query: 367 KASMLDEAIEYLKSLQLQLQVMWMGS-GMA---PLMFPGMQHYMSRMGMGMG---PPPLP 419
KASMLDEAIEYLKSLQLQ+Q+MWMGS G+A +MFPG+ Y+ RMG+GMG LP
Sbjct: 368 KASMLDEAIEYLKSLQLQVQMMWMGSAGIAAPPAVMFPGVHQYLPRMGVGMGAAAAAALP 427
Query: 420 SVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPV-NYQNQMQNSNFTEQYARYMGF 478
S+ R+P + A V + PV Y+ M TE Y Y+G
Sbjct: 428 SMP------RLPFM--------APQPVVPSAPVSVGPVPAYRGHMPAVGITEPYGHYIGV 473
Query: 479 H 479
+
Sbjct: 474 N 474
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 15/107 (14%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDW+ GD +P+G++++L+ELLW NGHVV+ SQ+ + P
Sbjct: 1 MNQFVPDWSNMGDT-----SRPLGEEDDLIELLWCNGHVVMQSQSHRKVPP--------- 46
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSE 107
+ + + +++ Q+DE W + DS +KD +S+ F E
Sbjct: 47 -RPEKAAAVAAPPAPASVPQEDEGGLWFPFALADSLDKDIFSEFFCE 92
>gi|226493691|ref|NP_001147809.1| PIL5 [Zea mays]
gi|195613866|gb|ACG28763.1| PIL5 [Zea mays]
Length = 539
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 157/301 (52%), Gaps = 51/301 (16%)
Query: 214 EVRECSMMT-VGSSHCGSNQVAYDLDM---SRASSSG----LNDDVRKVISPSERGKTET 265
E SM++ +GSS CGSNQV RAS+SG D PS G
Sbjct: 190 EAGASSMLSAIGSSICGSNQVLVQRAACAPGRASASGSGTARGDGSGSAALPSAVGSANA 249
Query: 266 IEPTVTSSSGGSGSSFNRTS-----------------KQSTGDNSLKRKSRDAVDSECQS 308
V G SS R++ ST + S KRK D DSE S
Sbjct: 250 N--AVGGGRGHEASSSGRSNYCCFGAATTTTTTTTTEPASTSNRSSKRKRLDTEDSESPS 307
Query: 309 EAAGFESGA--GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 366
E A S A K Q+ + RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD
Sbjct: 308 EDAESGSAAMLARKPPQKMTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 367
Query: 367 KASMLDEAIEYLKSLQLQLQVMWMGS-GMA---PLMFPGMQHYMSRMGMGMG---PPPLP 419
KASMLDEAIEYLKSLQLQ+Q+MWMGS G+A +MFPG+ Y+ RMG+GMG LP
Sbjct: 368 KASMLDEAIEYLKSLQLQVQMMWMGSAGIAAPPAVMFPGVHQYLPRMGVGMGAAAAAALP 427
Query: 420 SVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPV-NYQNQMQNSNFTEQYARYMGF 478
S+ R+P + A V + PV Y+ M TE Y Y+G
Sbjct: 428 SMP------RLPFM--------APQPVVPSAPVSVGPVPAYRGHMPAVGITEPYGHYIGV 473
Query: 479 H 479
+
Sbjct: 474 N 474
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 15/107 (14%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDW+ GD +P+G++++L+ELLW NGHVV+ SQ+ + P
Sbjct: 1 MNQFVPDWSNMGDT-----SRPLGEEDDLIELLWCNGHVVMQSQSHRKVPP--------- 46
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSE 107
+ + + +++ Q+DE W + DS KD +S+ F E
Sbjct: 47 -RPEKAAAVAAPPAPASVPQEDEGGLWFPFALADSLNKDIFSEFFCE 92
>gi|222424750|dbj|BAH20328.1| AT2G43010 [Arabidopsis thaliana]
Length = 409
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 177/324 (54%), Gaps = 47/324 (14%)
Query: 207 SGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETI 266
S + + E+ + S+ TVG SHCGSN DLD+S + N + + ++P+ +
Sbjct: 124 SSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMSHDRSKN--IEEKLNPNASSSSGGS 181
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG 326
+S + T D KRK + D E+ GNK+ QRSG
Sbjct: 182 SGCSFGKDIKEMAS----GRCITTDR--KRKRINHTD-----ESVSLSDAIGNKSNQRSG 230
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDKAS+LDEAI+YLKSLQLQLQ
Sbjct: 231 SNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 290
Query: 387 VMW------MGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMA 440
VMW + AP+MFPG+Q + + +P+ R P++DQS A
Sbjct: 291 VMWMGSGMAAAAASAPMMFPGVQPQQF----------IRQIQSPVQLPRFPVMDQS---A 337
Query: 441 QAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP-MQANS--QPMNMFRFGSPT 497
N ++CQ NPV QN ++++ARY+G P MQA + QPM M RF SP
Sbjct: 338 IQNNPGLVCQ----NPV------QNQIISDRFARYIGGFPHMQAATQMQPMEMLRFSSPA 387
Query: 498 MQNQIVSLPSSSCVPFSGGAATDN 521
Q PSS + G+ D+
Sbjct: 388 GQQS--QQPSSVPTKTTDGSRLDH 409
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 27 NELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSNLIQDDETVS 86
+ELVELLW++G VVL SQ H E Q QKQ SS ++D ETVS
Sbjct: 4 DELVELLWRDGQVVLQSQT---------HREQTQTQKQD--HHEEALRSSTFLEDQETVS 52
Query: 87 WI-HCPIEDSFE-KDFYSQLFSELPP 110
WI + P ED FE DF S FS + P
Sbjct: 53 WIQYPPDEDPFEPDDFSSHFFSTMDP 78
>gi|356505096|ref|XP_003521328.1| PREDICTED: transcription factor PIF1-like [Glycine max]
Length = 517
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 128/284 (45%), Positives = 159/284 (55%), Gaps = 52/284 (18%)
Query: 269 TVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSC 328
T+TSS GGS SS + + + + KRK R+A + ECQSE FES A K S S
Sbjct: 247 TMTSSPGGS-SSCDEPVQVAAAEEDRKRKGREAEEWECQSEDVDFESEA-KKQVCGSTST 304
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+RSRAAEVHNLSERRRRDRINEKM+ALQELIP CNK+DKASMLDEAI YLKSLQLQ+Q+M
Sbjct: 305 KRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMM 364
Query: 389 WMGSGMAPLMFPGMQHYMSRMGMGMGPP------------PLPSVTN------------- 423
MG GM P+MFPG+Q YM MGMG+G P P++
Sbjct: 365 SMGCGMVPVMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAH 424
Query: 424 --------PMHFSRVPLVDQS-MSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYAR 474
P H VP D S M A + ++ A +P NQ + NFT+ Y +
Sbjct: 425 LGPRFSMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDP----NQSRIPNFTDPYQQ 480
Query: 475 YMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAA 518
Y+G H MQ F+ +QNQ ++ P+ S +GG A
Sbjct: 481 YLGPHQMQ--------FQL----IQNQAMNQPNVSKPSNNGGPA 512
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 23/147 (15%)
Query: 2 NPCIPDWNFEGD----IPI------SNQMKPMGQDNELVELLWQNGHVVLSSQAQ-TQRK 50
N C+PD++ + D PI Q KP D++++ELLW NG VV+ SQ Q + RK
Sbjct: 6 NHCVPDFDIQMDHDHEYPILTPSALPRQKKPSIADDDIMELLWHNGQVVVQSQNQRSLRK 65
Query: 51 --PSLNHNEPRQV---QKQTLRGSGSCGNSSNLIQDDETVSWIHCPIED-------SFEK 98
P N ++ + +R N + + E SW+H PI+D SF
Sbjct: 66 LPPVTNSHDASPAGPSMTREIRPLVENFNQHLFMHEGEMASWLHYPIDDDEPALDQSFGA 125
Query: 99 DFYSQLFSELPPSGPMEVDKHTRQLRE 125
DF + S M+ HT QL E
Sbjct: 126 DFLYSPPTTANNSSFMQTLGHTSQLTE 152
>gi|291506702|gb|ADE08783.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506704|gb|ADE08784.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506706|gb|ADE08785.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506708|gb|ADE08786.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506710|gb|ADE08787.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506712|gb|ADE08788.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
Length = 430
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 177/324 (54%), Gaps = 47/324 (14%)
Query: 207 SGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETI 266
S + + E+ + S+ TVG SHCGSN DLD+S + N + + ++P+ +
Sbjct: 145 SSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMSHDRSKN--IEEKLNPNASSSSGGS 202
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG 326
+S + T D KRK + D E+ GNK+ QRSG
Sbjct: 203 SGCSFGKDIKEMAS----GRCITTDR--KRKRINDTD-----ESVSLSDAIGNKSNQRSG 251
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDKAS+LDEAI+YLKSLQLQLQ
Sbjct: 252 SNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 311
Query: 387 VMW------MGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMA 440
VMW + AP+MFPG+Q + + +P+ R P++DQS A
Sbjct: 312 VMWMGSGMAAAAASAPMMFPGVQPQQF----------IRQIQSPVQLPRFPVMDQS---A 358
Query: 441 QAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP-MQANS--QPMNMFRFGSPT 497
N ++CQ NPV QN ++++ARY+G P MQA + QPM M RF SP
Sbjct: 359 IQNNPGLVCQ----NPV------QNQIISDRFARYIGGFPHMQAATQMQPMEMLRFSSPA 408
Query: 498 MQNQIVSLPSSSCVPFSGGAATDN 521
Q PSS + G+ D+
Sbjct: 409 GQQS--QQPSSVPTKTTDGSRLDH 430
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 8 WNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLR 67
W+FE + +S + + +ELVELLW++G VVL SQ H E Q QKQ
Sbjct: 6 WSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQT---------HREQTQTQKQD-- 54
Query: 68 GSGSCGNSSNLIQDDETVSWI-HCPIEDSFE-KDFYSQLFSELPP 110
SS ++D ETVSWI + P ED FE DF S FS + P
Sbjct: 55 HHEEALRSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMDP 99
>gi|30689218|ref|NP_565991.2| transcription factor PIF4 [Arabidopsis thaliana]
gi|28201855|sp|Q8W2F3.1|PIF4_ARATH RecName: Full=Transcription factor PIF4; AltName: Full=Basic
helix-loop-helix protein 9; Short=AtbHLH9; Short=bHLH 9;
AltName: Full=Phytochrome-interacting factor 4; AltName:
Full=Short under red-light 2; AltName:
Full=Transcription factor EN 102; AltName: Full=bHLH
transcription factor bHLH009
gi|18026966|gb|AAL55716.1|AF251694_1 putative transcription factor BHLH9 [Arabidopsis thaliana]
gi|21068661|emb|CAD29449.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|222423257|dbj|BAH19605.1| AT2G43010 [Arabidopsis thaliana]
gi|225898591|dbj|BAH30426.1| hypothetical protein [Arabidopsis thaliana]
gi|291506714|gb|ADE08789.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506716|gb|ADE08790.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506718|gb|ADE08791.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506720|gb|ADE08792.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506722|gb|ADE08793.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506724|gb|ADE08794.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506726|gb|ADE08795.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|291506728|gb|ADE08796.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|330255103|gb|AEC10197.1| transcription factor PIF4 [Arabidopsis thaliana]
Length = 430
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 177/324 (54%), Gaps = 47/324 (14%)
Query: 207 SGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETI 266
S + + E+ + S+ TVG SHCGSN DLD+S + N + + ++P+ +
Sbjct: 145 SSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMSHDRSKN--IEEKLNPNASSSSGGS 202
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG 326
+S + T D KRK + D E+ GNK+ QRSG
Sbjct: 203 SGCSFGKDIKEMAS----GRCITTDR--KRKRINHTD-----ESVSLSDAIGNKSNQRSG 251
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDKAS+LDEAI+YLKSLQLQLQ
Sbjct: 252 SNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 311
Query: 387 VMW------MGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMA 440
VMW + AP+MFPG+Q + + +P+ R P++DQS A
Sbjct: 312 VMWMGSGMAAAAASAPMMFPGVQPQQF----------IRQIQSPVQLPRFPVMDQS---A 358
Query: 441 QAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP-MQANS--QPMNMFRFGSPT 497
N ++CQ NPV QN ++++ARY+G P MQA + QPM M RF SP
Sbjct: 359 IQNNPGLVCQ----NPV------QNQIISDRFARYIGGFPHMQAATQMQPMEMLRFSSPA 408
Query: 498 MQNQIVSLPSSSCVPFSGGAATDN 521
Q PSS + G+ D+
Sbjct: 409 GQQS--QQPSSVPTKTTDGSRLDH 430
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 8 WNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLR 67
W+FE + +S + + +ELVELLW++G VVL SQ H E Q QKQ
Sbjct: 6 WSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQT---------HREQTQTQKQD-- 54
Query: 68 GSGSCGNSSNLIQDDETVSWI-HCPIEDSFE-KDFYSQLFSELPP 110
SS ++D ETVSWI + P ED FE DF S FS + P
Sbjct: 55 HHEEALRSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMDP 99
>gi|449468728|ref|XP_004152073.1| PREDICTED: transcription factor PIF1-like [Cucumis sativus]
Length = 553
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 145/425 (34%), Positives = 206/425 (48%), Gaps = 67/425 (15%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQ-------DNELVELLWQNGHVVLSSQAQTQRKPSL 53
MN C+PD+ + D + + + D E++ELL QNG VV+ S Q R S
Sbjct: 1 MNYCVPDFETDEDSLLPSSSSVPSRSKTSSMLDGEVMELLCQNGQVVMQSPNQKSRMKSP 60
Query: 54 NHNEPRQVQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIED--SFEKDFYSQLFSELPPS 111
Q+ + R +Q+DE +SW+H P+ D + E F +L L PS
Sbjct: 61 QSTTAEQITNRDTRPMSQQEEPQLFMQEDEMISWLHYPLVDDSTLENSFRDEL---LYPS 117
Query: 112 GPMEVDKH---TRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDA 168
P ++++ + Q+R ++F P A+T++ + + R +PP R
Sbjct: 118 NPQSIEQNAVVSAQVRTTDGMEFRPLTAMTTT-------ATSTMVARPPIPPMR----RT 166
Query: 169 APQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSG-NLTQGEVRECSMMTVGSSH 227
P+ K VN G SG R S + ++ VRE ++ VGS+
Sbjct: 167 EPETK--------VN----------SFGRFSGHARRIESAPSNSKNMVRESTV--VGSTS 206
Query: 228 CGSNQVAYDLDMSRASSSGLNDDVR-------KVISPSERGKTETIEPTVTSSSGGSGSS 280
+ + + S + + D V +PS E ++ V+ +
Sbjct: 207 SNTMVLTPETRSSEVQRTAITDIPSCGLACSGGVAAPSTGNGGELMKMIVSETE-----P 261
Query: 281 FNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLS 340
RT+ S D K K D D C + + G+K + S S +RSRAAEVHNLS
Sbjct: 262 VQRTT--SLEDRKRKGKETDDSDYLC------YSTLKGSKQVRGSTSTKRSRAAEVHNLS 313
Query: 341 ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFP 400
ERRRRDRINEKM+ALQELIP CNK DKASMLDEAIEYLK+LQLQ+Q+M MG GM P+MFP
Sbjct: 314 ERRRRDRINEKMKALQELIPRCNKADKASMLDEAIEYLKTLQLQVQMMSMGCGMVPMMFP 373
Query: 401 GMQHY 405
G Q +
Sbjct: 374 GAQQF 378
>gi|356545930|ref|XP_003541386.1| PREDICTED: transcription factor PIF1-like [Glycine max]
Length = 476
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 104/144 (72%), Gaps = 2/144 (1%)
Query: 262 KTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKT 321
+T T + TVTSS G S S ++ D KRK R+ +SE QSE FES K
Sbjct: 195 ETATCDVTVTSSPGDSSGSAEPVEREPMADR--KRKGREHEESEFQSEDVDFESPEAKKQ 252
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
S S +RSRAAEVHNLSERRRRDRINEKM+ALQELIP CNK+DKASMLDEAIEYLKSL
Sbjct: 253 VHGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSL 312
Query: 382 QLQLQVMWMGSGMAPLMFPGMQHY 405
QLQ+Q+M MG GM P+MFPG+Q Y
Sbjct: 313 QLQVQMMSMGYGMVPMMFPGIQQY 336
>gi|242037911|ref|XP_002466350.1| hypothetical protein SORBIDRAFT_01g006190 [Sorghum bicolor]
gi|241920204|gb|EER93348.1| hypothetical protein SORBIDRAFT_01g006190 [Sorghum bicolor]
Length = 424
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/184 (51%), Positives = 119/184 (64%), Gaps = 7/184 (3%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGN-KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KRK R DS+ SE A E K ++R G RR+RAAEVHNLSERRRRDRINEKMR
Sbjct: 192 KRKGRCRDDSDSPSEDAECEEATEETKPSRRHGPKRRTRAAEVHNLSERRRRDRINEKMR 251
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQELIPHCNKTDKAS+LDE IEYLKSLQ+Q+Q+MWM SGMAP+MFPG +M M +GM
Sbjct: 252 ALQELIPHCNKTDKASILDETIEYLKSLQMQVQIMWMTSGMAPMMFPGAHQFMPPMALGM 311
Query: 414 GPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQ-MQNSNFTEQY 472
+P+ R+P ++ + N + + +NP+N NQ MQN + E
Sbjct: 312 NSGCIPAAQGLSQMPRLPYMNHPLP-----NHIPLNSSPAMNPLNAANQMMQNGHLREAS 366
Query: 473 ARYM 476
++
Sbjct: 367 NHFL 370
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 17 SNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSS 76
+NQ KP+ D++L+ELLW NG VV QA + P R +G+ G
Sbjct: 10 ANQKKPIVADDDLIELLWHNGSVVAQPQAHHRPA-----PAPAPPPSDRDRPAGASG--- 61
Query: 77 NLIQDDETVSWIHCPIEDSFEKDFYSQLF 105
+ +ET +W ++D+ EKD Y+ L+
Sbjct: 62 --LTGEETAAWFPDTLDDALEKDLYTHLW 88
>gi|449515805|ref|XP_004164938.1| PREDICTED: transcription factor PIF1-like [Cucumis sativus]
Length = 549
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 145/425 (34%), Positives = 203/425 (47%), Gaps = 71/425 (16%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQ-------DNELVELLWQNGHVVLSSQAQTQRKPSL 53
MN C+PD+ + D + + + D E++ELL QNG VV+ S Q R S
Sbjct: 1 MNYCVPDFETDEDSLLPSSSSVPSRSKTSSMLDGEVMELLCQNGQVVMQSPNQKSRMKSP 60
Query: 54 NHNEPRQVQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIED--SFEKDFYSQLFSELPPS 111
Q+ + R +Q+DE +SW+H P+ D + E F +L L PS
Sbjct: 61 QSTTAEQITNRDTRPMSQQEEPQLFMQEDEMISWLHYPLVDDSTLENSFRDEL---LYPS 117
Query: 112 GPMEVDKH---TRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDA 168
P ++++ + Q+R ++F P A+T++ + + R +PP R
Sbjct: 118 NPQSIEQNAVVSAQVRTTDGMEFRPLTAMTTT-------ATSTMVARPPIPPMR----RT 166
Query: 169 APQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSG-NLTQGEVRECSMMTVGSSH 227
P+ K VN G SG R S + ++ VRE ++ VGS+
Sbjct: 167 EPETK--------VN----------SFGRFSGHARRIESAPSNSKNMVRESTV--VGSTS 206
Query: 228 CGSNQVAYDLDMSRASSSGLNDDVR-------KVISPSERGKTETIEPTVTSSSGGSGSS 280
+ + + S + + D V +PS E ++ V+ +
Sbjct: 207 SNTMVLTPETRSSEVQRTAITDIPSCGLACSGGVAAPSTGNGGELMKMIVSETE-----P 261
Query: 281 FNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLS 340
RT+ S D K K D D C S K + S S +RSRAAEVHNLS
Sbjct: 262 VQRTT--SLEDRKRKGKETDDSDYLCYS----------TKQVRGSTSTKRSRAAEVHNLS 309
Query: 341 ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFP 400
ERRRRDRINEKM+ALQELIP CNK DKASMLDEAIEYLK+LQLQ+Q+M MG GM P+MFP
Sbjct: 310 ERRRRDRINEKMKALQELIPRCNKADKASMLDEAIEYLKTLQLQVQMMSMGCGMVPMMFP 369
Query: 401 GMQHY 405
G Q +
Sbjct: 370 GAQQF 374
>gi|30680909|ref|NP_179608.2| transcription factor PIF1 [Arabidopsis thaliana]
gi|334184322|ref|NP_001189559.1| transcription factor PIF1 [Arabidopsis thaliana]
gi|75299660|sp|Q8GZM7.1|PIF1_ARATH RecName: Full=Transcription factor PIF1; AltName: Full=Basic
helix-loop-helix protein 15; Short=AtbHLH15; Short=bHLH
15; AltName: Full=Protein PHY-INTERACTING FACTOR 1;
AltName: Full=Protein PHYTOCHROME INTERACTING FACTOR
3-LIKE 5; AltName: Full=Transcription factor EN 101;
AltName: Full=bHLH transcription factor bHLH015
gi|26051284|gb|AAN78308.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|28372351|dbj|BAC56979.1| PIF3 like basic Helix Loop Helix protein [Arabidopsis thaliana]
gi|330251883|gb|AEC06977.1| transcription factor PIF1 [Arabidopsis thaliana]
gi|330251885|gb|AEC06979.1| transcription factor PIF1 [Arabidopsis thaliana]
Length = 478
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 167/517 (32%), Positives = 239/517 (46%), Gaps = 106/517 (20%)
Query: 1 MNPCIPDWNFEGDIPISNQ-----------MKPMGQDNELVELLWQNGHVVLSSQAQTQR 49
M+ +PD++ + D ++N + MG+D++L+ELLWQNG VV+ +Q +
Sbjct: 1 MHHFVPDFDTDDDY-VNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVVVQNQRLHTK 59
Query: 50 KPSLNHNEPRQVQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELP 109
KPS + P ++ + + IQ+DE SW+H P+ D DF S L
Sbjct: 60 KPS---SSPPKLLPSMDPQQQPSSDQNLFIQEDEMTSWLHYPLRDD---DFCSDLLFS-- 111
Query: 110 PSGPMEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAA 169
T ++ PP + T+ P V RN M
Sbjct: 112 -----AAPTATATATVSQVTAARPPVSSTNESRPPV---------RNFM----------- 146
Query: 170 PQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGN----LTQGEVRECSMMT--- 222
NFS+ G F+ R G L++ VRE + ++
Sbjct: 147 -------------NFSR-----------LRGDFNNGRGGESGPLLSKAVVRESTQVSPSA 182
Query: 223 ---VGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGS 279
+S G + D S + G + K ++ + IE T TSSS S S
Sbjct: 183 TPSAAASESGLTRRTDGTDSSAVAGGGAYNRKGKAVAMT----APAIEITGTSSSVVSKS 238
Query: 280 SFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNL 339
+ T + KRK R+A ++ ++E+ E+ + + S +RSRAAEVHNL
Sbjct: 239 EIE---PEKTNVDDRKRKEREATTTD-ETESRSEETKQARVS---TTSTKRSRAAEVHNL 291
Query: 340 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMF 399
SER+RRDRINE+M+ALQELIP CNK+DKASMLDEAIEY+KSLQLQ+Q+M MG GM P+M+
Sbjct: 292 SERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMY 351
Query: 400 PGMQHYMSRMGMGMG-----PPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVL 454
PGMQ YM M MGMG PPP M ++ PL Q+ V AS
Sbjct: 352 PGMQQYMPHMAMGMGMNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYPV--HASDP 409
Query: 455 NPVNYQNQMQN---------SNFTEQYARYMGFHPMQ 482
+ V NQ + + +T+ Y ++ G HP Q
Sbjct: 410 SRVFVPNQQYDPTSGQPQYPAGYTDPYQQFRGLHPTQ 446
>gi|4580456|gb|AAD24380.1| unknown protein [Arabidopsis thaliana]
Length = 490
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 170/518 (32%), Positives = 241/518 (46%), Gaps = 108/518 (20%)
Query: 1 MNPCIPDWNFEGDIPISNQ-----------MKPMGQDNELVELLWQNGHVVLSSQAQTQR 49
M+ +PD++ + D ++N + MG+D++L+ELLWQNG VV+ +Q +
Sbjct: 1 MHHFVPDFDTDDDY-VNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVVVQNQRLHTK 59
Query: 50 KPSLNHNEPRQVQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQL-FSEL 108
KPS + P ++ + + IQ+DE SW+H P+ D DF S L FS
Sbjct: 60 KPS---SSPPKLLPSMDPQQQPSSDQNLFIQEDEMTSWLHYPLRDD---DFCSDLLFSAA 113
Query: 109 PPSGPMEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDA 168
P + R PP + T+ P V RN M
Sbjct: 114 PTATATATVSQVTAAR--------PPVSSTNESRPPV---------RNFM---------- 146
Query: 169 APQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGN----LTQGEVRECSMMT-- 222
NFS+ G F+ R G L++ VRE + ++
Sbjct: 147 --------------NFSR-----------LRGDFNNGRGGESGPLLSKAVVRESTQVSPS 181
Query: 223 ----VGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSG 278
+S G + D S + G + K ++ + IE T TSSS S
Sbjct: 182 ATPSAAASESGLTRRTDGTDSSAVAGGGAYNRKGKAVAMT----APAIEITGTSSSVVSK 237
Query: 279 SSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHN 338
S + T + KRK R+A ++ ++E+ E+ + + S +RSRAAEVHN
Sbjct: 238 SEIE---PEKTNVDDRKRKEREATTTD-ETESRSEETKQARVS---TTSTKRSRAAEVHN 290
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLM 398
LSER+RRDRINE+M+ALQELIP CNK+DKASMLDEAIEY+KSLQLQ+Q+M MG GM P+M
Sbjct: 291 LSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPMM 350
Query: 399 FPGMQHYMSRMGMGMG-----PPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASV 453
+PGMQ YM M MGMG PPP M ++ PL Q+ V AS
Sbjct: 351 YPGMQQYMPHMAMGMGMNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYPV--HASD 408
Query: 454 LNPVNYQNQMQN---------SNFTEQYARYMGFHPMQ 482
+ V NQ + + +T+ Y ++ G HP Q
Sbjct: 409 PSRVFVPNQQYDPTSGQPQYPAGYTDPYQQFRGLHPTQ 446
>gi|124360931|gb|ABN08903.1| Helix-loop-helix DNA-binding [Medicago truncatula]
Length = 484
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 150/293 (51%), Gaps = 45/293 (15%)
Query: 245 SGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDS 304
+ ++ V+ + +E + T GGS SS + KRK +A +
Sbjct: 172 AAFSETVKSLADQTEGDTEVAVVSTTFDEPGGSSSSEEPEPVGKVAEQDRKRKGIEAEEW 231
Query: 305 ECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
E QSE FES K S S +RSRAAEVHNLSERRRRDRINEKM+ALQELIP NK
Sbjct: 232 EYQSEDVDFESAEAKKNISGS-STKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNK 290
Query: 365 TDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYM------------SRMGMG 412
+DKASMLDEAI+YLKSLQLQ+Q+M MG GM P+MFPG+Q YM +
Sbjct: 291 SDKASMLDEAIDYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPTVGMGMGMGMEMGINRP 350
Query: 413 MGPPP-------LPSVTN--------PMHFSRVPLVDQS-MSMAQAQNRAVMCQASVLNP 456
+ P P LP+ N P H VP S M A + V+ A +
Sbjct: 351 VMPFPNMLSGSALPAAANLGPRFAMPPFHMPHVPTPGSSRMQAANQVDNNVITSAGTHD- 409
Query: 457 VNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSS 509
NQ + NF++ Y +Y+G H MQ F+ MQNQ ++ P+ S
Sbjct: 410 ---SNQSRTPNFSDSYQQYLGPHQMQ--------FQL----MQNQAMNQPNVS 447
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 21 KPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSC----GNSS 76
KP+ D+E++ELLWQNG VV TQR P+ H + ++T RG G+ N
Sbjct: 23 KPIIADDEIMELLWQNGQVV------TQR-PNHRHAKKPPSCQETTRGGGASPVENYNQY 75
Query: 77 NLIQDDETVSWIH---CPIEDSFEKDF 100
+Q++E SW+H P + +F D+
Sbjct: 76 LFMQENEMASWLHYDDSPFDRTFSTDY 102
>gi|297843750|ref|XP_002889756.1| hypothetical protein ARALYDRAFT_471048 [Arabidopsis lyrata subsp.
lyrata]
gi|297335598|gb|EFH66015.1| hypothetical protein ARALYDRAFT_471048 [Arabidopsis lyrata subsp.
lyrata]
Length = 522
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/162 (61%), Positives = 115/162 (70%), Gaps = 9/162 (5%)
Query: 262 KTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQ-SEAAGFESGAGNK 320
K + E V SS GSG+S + S+ + SLKRK D D +C+ SE ESG G K
Sbjct: 269 KDQESEKAVVCSSVGSGNSLDGPSESPSL--SLKRKHSDIQDIDCRHSEDVEEESGDGRK 326
Query: 321 TA--QRSG-SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
A R+G +RSR+AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEY
Sbjct: 327 EAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEY 386
Query: 378 LKSLQLQLQVMWMGSG--MAPLMF-PGMQHYMSRMGMGMGPP 416
LKSLQLQ+Q+M M SG M P+MF PGM HY + M MGMG P
Sbjct: 387 LKSLQLQVQIMSMASGYYMPPVMFPPGMGHYPAAMAMGMGMP 428
>gi|359487706|ref|XP_002276198.2| PREDICTED: transcription factor PIF3-like [Vitis vinifera]
Length = 752
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 111/158 (70%), Gaps = 8/158 (5%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQ 323
+TIEP V SS SG+S R S ++LKRK RD +SEC SE ES K+A
Sbjct: 394 KTIEPAVACSSVCSGNSVERASNDPK--HNLKRKCRDTEESECPSEDVEEESVGVRKSAP 451
Query: 324 RSGSC--RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
G +RSRAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 452 AKGGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTL 511
Query: 382 QLQLQVMWMGSG--MAPLMFP-GMQHYMSRMGMGMGPP 416
QLQ+Q+M MG+G M P+M P GMQH + MG PP
Sbjct: 512 QLQVQIMSMGTGLCMPPMMLPTGMQHIHAAH-MGHFPP 548
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 23/109 (21%)
Query: 23 MGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSS------ 76
G +N+ VEL+W+ G +++ Q+ RK L+++ P K + +G NS
Sbjct: 26 FGPENDFVELVWEGGQIMMQGQSSRARKSPLSNSFPSHTPKPRDKDTGHGTNSKMGKFGS 85
Query: 77 -----------------NLIQDDETVSWIHCPIEDSFEKDFYSQLFSEL 108
L QDD+ V W++ PI++S + D+ S EL
Sbjct: 86 MDFILNDFPLSVPSAEMGLSQDDDMVPWLNYPIDESLQHDYCSDFLQEL 134
>gi|326514040|dbj|BAJ92170.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 341
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 144/396 (36%), Positives = 182/396 (45%), Gaps = 108/396 (27%)
Query: 24 GQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSNLIQDDE 83
G+D LVELL +GHVV+ SQA +++ E
Sbjct: 23 GEDGGLVELLRCSGHVVMQSQA---------------------------------VRELE 49
Query: 84 TVSWIHCPIEDSFE-KDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAVTSSQH 142
W PI+DS E KD +S++F +P G K Q R GA +
Sbjct: 50 ATPWFQYPIDDSLEEKDLFSEIFGRMPADGAGTPWKEEDQGR----------GAADA--- 96
Query: 143 PNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQF 202
V L+ MPPP L D L PP E G
Sbjct: 97 -------VTALRSVLMPPPLL-----------LTDKAGL----HGHGPPVSEAG------ 128
Query: 203 DRKRSGNLTQGEVRECSMMTVGSSH-CGSNQVAYDLDMSRASSSGLNDDVRKVISPSER- 260
E S++T+ CG + A +S A+ +D V +S E
Sbjct: 129 --------------ESSVVTMAFGRPCGGSNEAQTPHVSDAAG---DDRVLLPLSSKEAR 171
Query: 261 -GKT-ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAG 318
G++ + T+T+SS S S KQ G S + + + +SE+A
Sbjct: 172 DGRSYHSASATLTTSSAWSRPSGASKRKQCDGAES----PGEVMQQDVESESADVTC--- 224
Query: 319 NKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYL 378
+TAQ+ + +R RAA+VHNLSERRRRDRINEKMRALQEL+PHCNKTDKASMLDEAIEYL
Sbjct: 225 -ETAQKPATAKRRRAAQVHNLSERRRRDRINEKMRALQELVPHCNKTDKASMLDEAIEYL 283
Query: 379 KSLQLQLQVMW-MGSGM--APLMFP-GMQHYMSRMG 410
KSLQLQLQVMW MG M AP+MFP G YM RM
Sbjct: 284 KSLQLQLQVMWAMGGRMAPAPVMFPAGAHQYMQRMA 319
>gi|296089857|emb|CBI39676.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 111/158 (70%), Gaps = 8/158 (5%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQ 323
+TIEP V SS SG+S R S ++LKRK RD +SEC SE ES K+A
Sbjct: 258 KTIEPAVACSSVCSGNSVERASNDPK--HNLKRKCRDTEESECPSEDVEEESVGVRKSAP 315
Query: 324 RSGSC--RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
G +RSRAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 316 AKGGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTL 375
Query: 382 QLQLQVMWMGSG--MAPLMFP-GMQHYMSRMGMGMGPP 416
QLQ+Q+M MG+G M P+M P GMQH + MG PP
Sbjct: 376 QLQVQIMSMGTGLCMPPMMLPTGMQHIHAAH-MGHFPP 412
>gi|449443927|ref|XP_004139727.1| PREDICTED: transcription factor PIF1-like [Cucumis sativus]
Length = 529
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/123 (67%), Positives = 94/123 (76%), Gaps = 8/123 (6%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRA 354
KRK R D+ECQSE +ES K + S S +RSRAAEVHNLSERRRRDRINEKM+A
Sbjct: 279 KRKGRALDDTECQSEDVEYESADPKKQLRGSTSTKRSRAAEVHNLSERRRRDRINEKMKA 338
Query: 355 LQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMG 414
LQELIP CNKTDKASMLDEAIEYLK+LQLQ+Q+M MG GM P+MFPG+Q Y+
Sbjct: 339 LQELIPRCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYL-------- 390
Query: 415 PPP 417
PPP
Sbjct: 391 PPP 393
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 1 MNPCIPDWNFEGDIPI---SNQMKPMGQ---DNELVELLWQNGHVVLSSQAQTQRKPS-- 52
MN C+PD+ D + S+ +P D++++ELLWQNG VV SQ Q + S
Sbjct: 7 MNHCVPDFEMADDFSLPTFSSLTRPRKSSLPDDDVMELLWQNGQVVTHSQNQRSFRKSPP 66
Query: 53 --LNHNEPR-QVQKQTLRGSGSCGNSSNL-IQDDETVSWIHCPIEDSFEKDFYSQLF 105
+ + P+ Q + +R S L +Q+DE SW++ P+ + + +F S L
Sbjct: 67 SKFDVSIPQEQAATREIRPSTQLEEHHELFMQEDEMASWLNYPLVE--DHNFCSDLL 121
>gi|356575289|ref|XP_003555774.1| PREDICTED: transcription factor PIF3-like [Glycine max]
Length = 633
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 124/174 (71%), Gaps = 14/174 (8%)
Query: 240 SRASSSGLNDDVRKVISPS-ERGKT---ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLK 295
S+ S++ ++ +V+ S +G+T +++EP V SSS SG+ ++ S + + +LK
Sbjct: 278 SKESATKIDQTPNQVLGDSGTKGQTAAEKSMEPAVASSSVCSGTGADQGSDEP--NQNLK 335
Query: 296 RKSRDAVDSECQSEAAGFESGAGNKTA--QRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
RK++D DSEC SE ES KTA Q +RSRAAEVHNLSERRRRDRINEKMR
Sbjct: 336 RKTKDTDDSECHSEE---ESAGAKKTAGGQGGAGSKRSRAAEVHNLSERRRRDRINEKMR 392
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG--MAPLMFP-GMQH 404
ALQELIP+CNK DKASMLDEAIEYLK+LQLQ+Q+M MG+G M P+M P GMQH
Sbjct: 393 ALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQH 446
>gi|147770956|emb|CAN76246.1| hypothetical protein VITISV_023382 [Vitis vinifera]
Length = 627
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 111/158 (70%), Gaps = 8/158 (5%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQ 323
++IEP V SS SG+S R S ++LKRK RD +SEC SE ES K+A
Sbjct: 379 KSIEPAVACSSVCSGNSVERASNDPK--HNLKRKCRDTEESECPSEDVEEESVGVRKSAP 436
Query: 324 RSGSC--RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
G +RSRAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 437 AKGGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTL 496
Query: 382 QLQLQVMWMGSG--MAPLMFP-GMQHYMSRMGMGMGPP 416
QLQ+Q+M MG+G M P+M P GMQH + MG PP
Sbjct: 497 QLQVQIMSMGTGLCMPPMMLPTGMQHIHAAH-MGHFPP 533
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 23/109 (21%)
Query: 23 MGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSS------ 76
G +N+ VEL+W+ G +++ Q+ RK L+++ P K + +G NS
Sbjct: 26 FGPENDFVELVWEGGQIMMQGQSSRARKSPLSNSFPSHTPKPRDKDTGHGTNSKMGKFGS 85
Query: 77 -----------------NLIQDDETVSWIHCPIEDSFEKDFYSQLFSEL 108
L QDD+ V W++ PI++S + D+ S EL
Sbjct: 86 MDFILNDFPLSVPSAEMGLSQDDDMVPWLNYPIDESLQHDYCSDFLQEL 134
>gi|242042934|ref|XP_002459338.1| hypothetical protein SORBIDRAFT_02g002760 [Sorghum bicolor]
gi|241922715|gb|EER95859.1| hypothetical protein SORBIDRAFT_02g002760 [Sorghum bicolor]
Length = 446
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 169/326 (51%), Gaps = 44/326 (13%)
Query: 206 RSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTET 265
RSGN G R VGSS GSN VA ++ L+DD+ V G
Sbjct: 137 RSGNSGVGSSRTAGQ-EVGSSFSGSNLVA--------AAMHLDDDIDDV------GVAAA 181
Query: 266 IEPTVTSSSGGSGSSFNRTSKQSTGDNS-LKRKSRDAVDSECQSEAAGFESGAGNKTAQR 324
+ + + +G+ ++ N+ L ++SRD D + + E+ ++ +
Sbjct: 182 LPVPLDDPATATGAGAGASTSSGWNSNAPLHKRSRDEFDEDADLDTVD-ETPPSSRDRRP 240
Query: 325 SGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQ 384
+ + RR+RAAEVHN+SERRRRDRINEKMRALQEL+PHCNKTDKAS+LDEAIEYLKSLQ+Q
Sbjct: 241 ASNKRRTRAAEVHNMSERRRRDRINEKMRALQELVPHCNKTDKASILDEAIEYLKSLQMQ 300
Query: 385 LQVMWMGSGMAPLMFPGMQHYMSRMGMGMG----PPPLPSVTN-----PMHFSRVPLVDQ 435
+Q+MWM +GMAP+M PG M M MG+ PPP + P HF PL++Q
Sbjct: 301 VQIMWMSTGMAPMMIPGAHQLMPPMTMGLNSARMPPPAVQFLSQMQRVPPHFMNNPLLNQ 360
Query: 436 SMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANS-----QPMNM 490
M N N +Q Q++ R HP +++ Q ++
Sbjct: 361 MPQMLPPPT----------NAPNVTDQAQSNRMA--LPRNPFLHPNDSDALTTPHQVPSL 408
Query: 491 FRFGSPTMQ-NQIVSLPSSSCVPFSG 515
F +G +Q N+I L +S+ P G
Sbjct: 409 FGYGPQMVQVNEIQELLTSTAAPALG 434
>gi|356534971|ref|XP_003536024.1| PREDICTED: transcription factor PIF3-like [Glycine max]
Length = 665
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/143 (62%), Positives = 106/143 (74%), Gaps = 7/143 (4%)
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG 326
EP V SSS SG+ ++ S++ + +LKRK +D DSEC SE ES KTA G
Sbjct: 370 EPAVASSSVCSGNGTDQGSEEP--NQNLKRKRKDTDDSECHSEDVEEESAGAKKTAGGRG 427
Query: 327 SC--RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQ 384
+RSRAAEVHNLSER+RRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+LQLQ
Sbjct: 428 GAGSKRSRAAEVHNLSERKRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQ 487
Query: 385 LQVMWMGSG--MAPLMFP-GMQH 404
+Q+M MG+G M P+M P GMQH
Sbjct: 488 VQIMSMGAGLYMPPMMLPAGMQH 510
>gi|255560265|ref|XP_002521150.1| Phytochrome-interacting factor, putative [Ricinus communis]
gi|223539719|gb|EEF41301.1| Phytochrome-interacting factor, putative [Ricinus communis]
Length = 572
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/146 (63%), Positives = 102/146 (69%)
Query: 260 RGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGN 319
R T T E TVTSS GGS +S Q + KRK R+ SE FES
Sbjct: 288 REMTTTCEMTVTSSPGGSSASAEPPQPQRPPADDRKRKGREEETEYYHSEDVEFESADAK 347
Query: 320 KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLK 379
K A+ S S +RSRAAEVHNLSERRRRDRINEKMRALQELIP CNK+DKASMLDEAIEYLK
Sbjct: 348 KQARGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLK 407
Query: 380 SLQLQLQVMWMGSGMAPLMFPGMQHY 405
SLQLQ+Q+M MG M P+MFPG+Q Y
Sbjct: 408 SLQLQVQMMSMGCSMVPMMFPGIQQY 433
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 35/138 (25%)
Query: 1 MNPCIPDWNFEGD--IPISNQM-KP----MGQDNELVELLWQNGHVVLSSQAQTQRKPSL 53
M+ +PD+ + D IP S+ + +P ++E +ELLW NG VV+ Q Q+ +KP
Sbjct: 1 MSHYVPDFEMDDDCAIPTSSTLVRPKKSITSTEDEFMELLWHNGQVVV--QTQSLKKPQQ 58
Query: 54 NHNE------------PRQVQKQTLRGSGSCGNSSN-------------LIQDDETVSWI 88
H++ PR V + NS+N +Q+DE SW+
Sbjct: 59 QHHKYDDAVIPVDQSNPRDVIRTAQEHHNHNNNSNNNNNNNNNTHNSNLFMQEDEMASWL 118
Query: 89 HCPIEDS-FEKDFYSQLF 105
H PI D+ F++DF + L
Sbjct: 119 HYPINDTNFDQDFCADLL 136
>gi|15217533|ref|NP_172424.1| transcription factor PIF3 [Arabidopsis thaliana]
gi|30681206|ref|NP_849626.1| transcription factor PIF3 [Arabidopsis thaliana]
gi|20532207|sp|O80536.1|PIF3_ARATH RecName: Full=Transcription factor PIF3; AltName: Full=Basic
helix-loop-helix protein 8; Short=AtbHLH8; Short=bHLH 8;
AltName: Full=Phytochrome-associated protein 3; AltName:
Full=Phytochrome-interacting factor 3; AltName:
Full=Transcription factor EN 100; AltName: Full=bHLH
transcription factor bHLH008
gi|18026964|gb|AAL55715.1|AF251693_1 putative transcription factor BHLH8 [Arabidopsis thaliana]
gi|3482928|gb|AAC33213.1| Unknown protein [Arabidopsis thaliana]
gi|3929586|gb|AAC95156.1| phytochrome interacting factor 3 [Arabidopsis thaliana]
gi|26449609|dbj|BAC41930.1| putative transcription factor BHLH8 [Arabidopsis thaliana]
gi|332190336|gb|AEE28457.1| transcription factor PIF3 [Arabidopsis thaliana]
gi|332190337|gb|AEE28458.1| transcription factor PIF3 [Arabidopsis thaliana]
Length = 524
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 150/411 (36%), Positives = 205/411 (49%), Gaps = 49/411 (11%)
Query: 27 NELVELLWQNGHVVLSSQAQTQRK---PSLNHNEPRQVQKQTLRGSGSCGNS-------- 75
+E+VEL+W+NG + SQ+ R P N + R++ G+GS
Sbjct: 27 DEVVELVWENGQISTQSQSSRSRNIPPPQANSSRAREI------GNGSKTTMVDEIPMSV 80
Query: 76 ----SNLIQDDETVSWI-HCPIEDSFEKDFYSQLFSELPPS---GPMEVDKHTRQLREEK 127
+ L QDD+ V W+ H P D + DF + S + + M V++ L + +
Sbjct: 81 PSLMTGLSQDDDFVPWLNHHPSLDGYCSDFLRDVSSPVTVNEQESDMAVNQTAFPLFQRR 140
Query: 128 MVKFDPPGAVTSSQHPNV-NHSVVPELQRNAMP-----PPRFEVHDAAPQNKNLGDLGKL 181
+ A +SSQ+ +HS+ + +P P RF N L
Sbjct: 141 KDGNESAPAASSSQYNGFQSHSLYGSDRARDLPSQQTNPDRFTQTQEPLITSNKP---SL 197
Query: 182 VNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSR 241
VNFS P + D K + V + ++ S ++V L+ S
Sbjct: 198 VNFSHFLRPATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAKDSE---DKV---LNESV 251
Query: 242 ASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDA 301
AS++ ++ +IS K + E V SS GSG+S + S+ + SLKRK +
Sbjct: 252 ASATPKDNQKACLISEDSCRKDQESEKAVVCSSVGSGNSLDGPSESPSL--SLKRKHSNI 309
Query: 302 VDSECQSEAAGFESGAGNKTA--QRSG-SCRRSRAAEVHNLSERRRRDRINEKMRALQEL 358
D +C SE ESG G K A R+G +RSR+AEVHNLSERRRRDRINEKMRALQEL
Sbjct: 310 QDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQEL 369
Query: 359 IPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA---PLMF-PGMQHY 405
IP+CNK DKASMLDEAIEYLKSLQLQ+Q+M M SG +MF PGM HY
Sbjct: 370 IPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPAVMFPPGMGHY 420
>gi|4093153|gb|AAC99771.1| phytochrome-associated protein 3 [Arabidopsis thaliana]
Length = 524
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 150/411 (36%), Positives = 204/411 (49%), Gaps = 49/411 (11%)
Query: 27 NELVELLWQNGHVVLSSQAQTQRK---PSLNHNEPRQVQKQTLRGSGSCGNS-------- 75
+E+VEL+W+NG + SQ+ R P N + R++ G+GS
Sbjct: 27 DEVVELVWENGQISTQSQSSRSRNIPPPQANSSRAREI------GNGSKTTMVDEIPMSV 80
Query: 76 ----SNLIQDDETVSWI-HCPIEDSFEKDFYSQLFSELPPS---GPMEVDKHTRQLREEK 127
+ L QDD+ V W+ H P D + DF + S + + M V++ L + +
Sbjct: 81 PSLMTGLSQDDDFVPWLNHHPSLDGYCSDFLRDVSSPVTVNEQESDMAVNQTAFPLFQRR 140
Query: 128 MVKFDPPGAVTSSQHPNV-NHSVVPELQRNAMP-----PPRFEVHDAAPQNKNLGDLGKL 181
+ A +SSQ+ +HS+ + +P P RF N L
Sbjct: 141 KDGNESAPAASSSQYNGFQSHSLYGSDRARDLPSQQTNPDRFTQTQEPLITSNKP---SL 197
Query: 182 VNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSR 241
VNFS P + D K + V + ++ S ++V L+ S
Sbjct: 198 VNFSHFLRPATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAKDSE---DKV---LNESV 251
Query: 242 ASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDA 301
AS++ ++ +IS K + E V SS GSG+S + S+ + SLKRK +
Sbjct: 252 ASATPKDNQKACLISEDSCRKDQESEKAVVCSSVGSGNSLDGPSESPSL--SLKRKHSNI 309
Query: 302 VDSECQSEAAGFESGAGNKTA--QRSG-SCRRSRAAEVHNLSERRRRDRINEKMRALQEL 358
D +C SE ESG G K A R+G +RSR AEVHNLSERRRRDRINEKMRALQEL
Sbjct: 310 QDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRLAEVHNLSERRRRDRINEKMRALQEL 369
Query: 359 IPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA---PLMF-PGMQHY 405
IP+CNK DKASMLDEAIEYLKSLQLQ+Q+M M SG +MF PGM HY
Sbjct: 370 IPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPAVMFPPGMGHY 420
>gi|357510373|ref|XP_003625475.1| Transcription factor PIF1 [Medicago truncatula]
gi|355500490|gb|AES81693.1| Transcription factor PIF1 [Medicago truncatula]
Length = 467
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 150/299 (50%), Gaps = 51/299 (17%)
Query: 245 SGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDS 304
+ ++ V+ + +E + T GGS SS + KRK +A +
Sbjct: 172 AAFSETVKSLADQTEGDTEVAVVSTTFDEPGGSSSSEEPEPVGKVAEQDRKRKGIEAEEW 231
Query: 305 ECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
E QSE FES K S S +RSRAAEVHNLSERRRRDRINEKM+ALQELIP NK
Sbjct: 232 EYQSEDVDFESAEAKKNISGS-STKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNK 290
Query: 365 TDKASMLDEAIEYLKSLQLQ------LQVMWMGSGMAPLMFPGMQHYM------------ 406
+DKASMLDEAI+YLKSLQLQ +Q+M MG GM P+MFPG+Q YM
Sbjct: 291 SDKASMLDEAIDYLKSLQLQVQRVQLMQMMSMGCGMVPMMFPGIQQYMPTVGMGMGMGME 350
Query: 407 SRMGMGMGPPP-------LPSVTN--------PMHFSRVPLVDQS-MSMAQAQNRAVMCQ 450
+ + P P LP+ N P H VP S M A + V+
Sbjct: 351 MGINRPVMPFPNMLSGSALPAAANLGPRFAMPPFHMPHVPTPGSSRMQAANQVDNNVITS 410
Query: 451 ASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSS 509
A + NQ + NF++ Y +Y+G H MQ F+ MQNQ ++ P+ S
Sbjct: 411 AGTHD----SNQSRTPNFSDSYQQYLGPHQMQ--------FQL----MQNQAMNQPNVS 453
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 21 KPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSC----GNSS 76
KP+ D+E++ELLWQNG VV TQR P+ H + ++T RG G+ N
Sbjct: 23 KPIIADDEIMELLWQNGQVV------TQR-PNHRHAKKPPSCQETTRGGGASPVENYNQY 75
Query: 77 NLIQDDETVSWIH---CPIEDSFEKDF 100
+Q++E SW+H P + +F D+
Sbjct: 76 LFMQENEMASWLHYDDSPFDRTFSTDY 102
>gi|339778391|gb|AEK06077.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778393|gb|AEK06078.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778395|gb|AEK06079.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778399|gb|AEK06081.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778401|gb|AEK06082.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778405|gb|AEK06084.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778407|gb|AEK06085.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778409|gb|AEK06086.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778411|gb|AEK06087.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778413|gb|AEK06088.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778415|gb|AEK06089.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778417|gb|AEK06090.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778419|gb|AEK06091.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778421|gb|AEK06092.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778423|gb|AEK06093.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778425|gb|AEK06094.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778427|gb|AEK06095.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
gi|339778429|gb|AEK06096.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
Length = 589
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 112/153 (73%), Gaps = 8/153 (5%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFES-GAGNKTA 322
+T EP V SSS GSG+S R S T +LKRK RD +SE SE A ES GA +
Sbjct: 253 KTTEPLVASSSVGSGNSAERPSDDPT--ENLKRKHRDTEESEGPSEDAEEESVGAKKPAS 310
Query: 323 QRSGS-CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
R+G+ +R RAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 311 ARAGNGSKRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTL 370
Query: 382 QLQLQVMWMGSGM---APLMFPGMQH-YMSRMG 410
QLQ+Q+M MG+GM + ++ PGM H + + MG
Sbjct: 371 QLQVQIMSMGAGMYMPSMMLPPGMPHMHAAHMG 403
>gi|339778397|gb|AEK06080.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
Length = 589
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 112/153 (73%), Gaps = 8/153 (5%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFES-GAGNKTA 322
+T EP V SSS GSG+S R S T +LKRK RD +SE SE A ES GA +
Sbjct: 253 KTTEPLVASSSVGSGNSAERPSDDPT--ENLKRKHRDTEESEGPSEDAEEESVGAKKPAS 310
Query: 323 QRSGS-CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
R+G+ +R RAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 311 ARAGNGSKRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTL 370
Query: 382 QLQLQVMWMGSGM---APLMFPGMQH-YMSRMG 410
QLQ+Q+M MG+GM + ++ PGM H + + MG
Sbjct: 371 QLQVQIMSMGAGMYMPSMMLPPGMPHMHAAHMG 403
>gi|339778403|gb|AEK06083.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
Length = 589
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 112/153 (73%), Gaps = 8/153 (5%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFES-GAGNKTA 322
+T EP V SSS GSG+S R S T +LKRK RD +SE SE A ES GA +
Sbjct: 253 KTTEPLVASSSVGSGNSAERPSDDPT--ENLKRKHRDTEESEGPSEDAEEESVGAKKPAS 310
Query: 323 QRSGS-CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
R+G+ +R RAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 311 ARAGNGSKRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTL 370
Query: 382 QLQLQVMWMGSGM---APLMFPGMQH-YMSRMG 410
QLQ+Q+M MG+GM + ++ PGM H + + MG
Sbjct: 371 QLQVQIMSMGAGMYMPSMMLPPGMPHMHAAHMG 403
>gi|339778389|gb|AEK06076.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
Length = 589
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 112/153 (73%), Gaps = 8/153 (5%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFES-GAGNKTA 322
+T EP V SSS GSG+S R S T +LKRK RD +SE SE A ES GA +
Sbjct: 253 KTTEPLVASSSVGSGNSAERPSDDPT--ENLKRKHRDTEESEGPSEDAEEESVGAKKPAS 310
Query: 323 QRSGS-CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
R+G+ +R RAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 311 ARAGNGSKRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTL 370
Query: 382 QLQLQVMWMGSGM---APLMFPGMQH-YMSRMG 410
QLQ+Q+M MG+GM + ++ PGM H + + MG
Sbjct: 371 QLQVQIMSMGAGMYMPSMMLPPGMPHMHAAHMG 403
>gi|326492944|dbj|BAJ90328.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 209
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/115 (71%), Positives = 91/115 (79%), Gaps = 4/115 (3%)
Query: 300 DAVDSECQSEAAGFESGA-GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQEL 358
D DSE SE A ES A K Q+ + RRSRAAEVHNLSERRRRDRINEKMRALQEL
Sbjct: 3 DTEDSESPSEDAESESLALDRKPPQKLTTARRSRAAEVHNLSERRRRDRINEKMRALQEL 62
Query: 359 IPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA---PLMFPGMQHYMSRMG 410
IPHCNKTDKASMLDEAIEYLK+LQ+Q+Q+MWMG GMA +MFPGM Y+ +MG
Sbjct: 63 IPHCNKTDKASMLDEAIEYLKTLQMQVQMMWMGGGMAAPPAVMFPGMHQYLPQMG 117
>gi|339778387|gb|AEK06075.1| phytochrome-interacting factor 3.1 [Populus balsamifera]
Length = 589
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/153 (62%), Positives = 111/153 (72%), Gaps = 8/153 (5%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFES-GAGNKTA 322
+T EP V SSS GSG+S R S T +LKRK RD +SE SE A ES GA +
Sbjct: 253 KTTEPLVASSSVGSGNSAERPSDDPT--ENLKRKHRDTEESEGPSEDAEEESVGAKKPAS 310
Query: 323 QRSGS-CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
R+G+ +R RAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 311 ARAGNGSKRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTL 370
Query: 382 QLQLQVMWMGSG--MAPLMF-PGMQH-YMSRMG 410
QLQ+Q+M MG+G M +M PGM H + + MG
Sbjct: 371 QLQVQIMSMGAGIYMPSMMLPPGMPHMHAAHMG 403
>gi|357441953|ref|XP_003591254.1| Transcription factor PIF3 [Medicago truncatula]
gi|355480302|gb|AES61505.1| Transcription factor PIF3 [Medicago truncatula]
Length = 721
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 111/163 (68%), Gaps = 11/163 (6%)
Query: 247 LNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSEC 306
L D+ K + +++G +E V SSS SG+ +R S D LKRKSRD DSEC
Sbjct: 387 LGDNGAKGHAAADKG----MEVAVASSSVCSGNGADRGSDDPNRD--LKRKSRDTEDSEC 440
Query: 307 QSEAAGFESGAGNKTAQRSG--SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
SE ES K A G +RSRAAEVHNLSERRRRDRINEKMRALQELIP+CNK
Sbjct: 441 HSEDVEDESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK 500
Query: 365 TDKASMLDEAIEYLKSLQLQLQVMWMGSG--MAPLMFP-GMQH 404
DKASMLDEAIEYLK+LQLQ+Q+M MG+G M +M P GMQH
Sbjct: 501 VDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPAGMQH 543
>gi|297832118|ref|XP_002883941.1| hypothetical protein ARALYDRAFT_319546 [Arabidopsis lyrata subsp.
lyrata]
gi|297329781|gb|EFH60200.1| hypothetical protein ARALYDRAFT_319546 [Arabidopsis lyrata subsp.
lyrata]
Length = 486
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 220/485 (45%), Gaps = 90/485 (18%)
Query: 23 MGQDNE-LVELLWQNGHVVLSSQA---QTQRKPSLNHNEPRQVQ-------KQTLRGSGS 71
MG+D++ L+ELLWQNG VV+ +Q +KPS + + +Q +
Sbjct: 35 MGEDDDDLMELLWQNGQVVVQNQRLHNNNTKKPSSSSFPTKLLQPPIPPSMDNHQQQQQP 94
Query: 72 CGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKF 131
+ + IQ+DE SW+H P+ D DF S L P+ P +R
Sbjct: 95 SSDQNLFIQEDEMTSWLHYPLRDD---DFCSDLLFSAAPTPPCATSHVVTAVR------- 144
Query: 132 DPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPP 191
PP V SS + + PP R +NFS+
Sbjct: 145 -PPVPVPSSSN-------------ESRPPVR-----------------NFMNFSR----- 168
Query: 192 KGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDM---SRASSSGLN 248
G F R + + VRE + ++ ++ + L SS+GLN
Sbjct: 169 ------LRGDFSNGRGESGPKTIVRESTQVSPSATPSSAAASESGLTRRTDGTDSSAGLN 222
Query: 249 DDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQS 308
+ V IE T TSSS S S K + D K + ++EC+S
Sbjct: 223 RKGKAVAM-----TAPAIEITGTSSSVVSKSEI-EPEKTNFDDKKRKEREATTEEAECRS 276
Query: 309 EAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKA 368
E G+ + S +RSRAAEVHNLSER+RRDRINE+M+ALQELIP CNK+DKA
Sbjct: 277 EETKQARGS-------TTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKA 329
Query: 369 SMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMG-----PPPLPSVTN 423
SMLDEAIEY+KSLQLQ+QVM MG GM P+M+PGMQ YM M M MG PPP
Sbjct: 330 SMLDEAIEYMKSLQLQIQVMSMGCGMMPMMYPGMQQYMPHMAMRMGMNQPLPPPSFMPFP 389
Query: 424 PMHFSRVPLVDQS-MSMAQAQNRAVMCQASVLNPVNYQ-----NQMQNSNFTEQYARYMG 477
M ++ PL Q+ M + Q S + N Q Q Q + + Y ++ G
Sbjct: 390 NMLAAQRPLPTQTQMGGSTPQYPVHASDPSRVFVPNQQYDPTSGQPQYPGYMDPYQQFRG 449
Query: 478 FHPMQ 482
HP Q
Sbjct: 450 LHPTQ 454
>gi|31043851|emb|CAD32238.1| BP-5 protein [Oryza sativa]
Length = 335
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 137/267 (51%), Gaps = 50/267 (18%)
Query: 174 NLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMT-VGSSHCGSNQ 232
N GDL +LV +S SG R+++ G SM++ +GSS CGSNQ
Sbjct: 9 NAGDLSELVRARRS-----------SGGAARRKAEAGGGGGGASSSMLSAIGSSICGSNQ 57
Query: 233 VAYDLDMSRASSSGLNDDVRKVISPSERG----------------------KTETIEPTV 270
V + AS G R+ PS G +
Sbjct: 58 V--QVQQRTASEPG-----RRGAPPSAWGARTPSPAAGPTTATATRRPPWRRRRGGPTAA 110
Query: 271 TSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRR 330
++ T S ++ R R + +S + A TA RR
Sbjct: 111 SAPPPPRSRRAPATGAASASGSTPPRTPRAPARTRSRSRLVARKPPAKMTTA------RR 164
Query: 331 SRAAEVHNLSERRRRDRINEKMRALQ--ELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
SRAAEVHNLSERRRRDRINEKMRALQ ELIPHCNKTDKASMLDEAIEYLKSLQLQL+VM
Sbjct: 165 SRAAEVHNLSERRRRDRINEKMRALQELELIPHCNKTDKASMLDEAIEYLKSLQLQLRVM 224
Query: 389 WMGSGMA-PLMFPGMQHYMSRMGMGMG 414
WMGSGMA PLMFPG+ Y+ RMG+ +G
Sbjct: 225 WMGSGMAPPLMFPGVHQYLPRMGVRIG 251
>gi|224124534|ref|XP_002330047.1| predicted protein [Populus trichocarpa]
gi|222871472|gb|EEF08603.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/153 (59%), Positives = 111/153 (72%), Gaps = 8/153 (5%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFES-GAGNKTA 322
+T EP V SSS GS +S R S T +LKRK RD +SE SE ES GA +
Sbjct: 389 KTKEPVVASSSVGSDNSVERASDDPT--ENLKRKHRDTEESEGPSEDVEEESVGAKKQAP 446
Query: 323 QRSGS-CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
R+G+ +R+RAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 447 ARAGNGSKRNRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTL 506
Query: 382 QLQLQVMWMGSGM---APLMFPGMQH-YMSRMG 410
QLQ+Q+M MG+G+ + ++ PGM H + + MG
Sbjct: 507 QLQVQIMSMGAGLYMPSMMLPPGMPHMHAAHMG 539
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 22/135 (16%)
Query: 7 DWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTL 66
D++ E D S + + +N+ EL+W+NG + S + Q +L P+ K
Sbjct: 7 DFSQEKDPSCSTDLSFVRPENDFGELIWENGQIQSSRARKIQPCSTLPCQNPKIRYKDIG 66
Query: 67 RGS----GSCGNSSNLI---------------QDDETVSWIHCPIEDSFEKDFYSQLFSE 107
G+ G G + + QDD+ V W++ P+++S + D+ S+ E
Sbjct: 67 NGTDIRTGKFGMMESTLNELPMSVPAVEMGVNQDDDMVPWLNYPLDESPQHDYCSEFLPE 126
Query: 108 LPPSGPMEVDKHTRQ 122
L SG + V+ H+ Q
Sbjct: 127 L--SG-VTVNGHSSQ 138
>gi|222636419|gb|EEE66551.1| hypothetical protein OsJ_23063 [Oryza sativa Japonica Group]
Length = 517
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 130/236 (55%), Gaps = 36/236 (15%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KR + VDS SE A + ++R + RR+RAAEVHNLSERRRRDRINEK+R
Sbjct: 297 FKRGREELVDS--LSEVAD-----ETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLR 349
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQEL+PHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM +G+ P+MFPG M MGMG+
Sbjct: 350 ALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQLMPPMGMGL 409
Query: 414 GPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASV-----------LNPVNYQNQ 462
+P Q+ + Q Q S+ +N + +
Sbjct: 410 NTACMPGA-------------QAQGLNQMQRTTYYMNNSLPNQMPQIPSPAMNAPSVPDD 456
Query: 463 MQNSNFTEQYARYMGFH---PMQANSQPMNMFRFGSPTM-QNQIVSLPSSSCVPFS 514
MQN N + R H + A +Q +F +GS QN+I L S + +P S
Sbjct: 457 MQNDNRI-RGPRNPFLHCNDTLTATAQVPGLFTYGSQIAEQNEIQELLSGAVIPSS 511
>gi|218199079|gb|EEC81506.1| hypothetical protein OsI_24867 [Oryza sativa Indica Group]
Length = 593
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 130/236 (55%), Gaps = 36/236 (15%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KR + VDS SE A + ++R + RR+RAAEVHNLSERRRRDRINEK+R
Sbjct: 373 FKRGREELVDS--LSEVAD-----ETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLR 425
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQEL+PHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM +G+ P+MFPG M MGMG+
Sbjct: 426 ALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQLMPPMGMGL 485
Query: 414 GPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASV-----------LNPVNYQNQ 462
+P Q+ + Q Q S+ +N + +
Sbjct: 486 NTACMPGA-------------QAQGLNQMQRTTYYMNNSLPNQMPQIPSPAMNAPSVPDD 532
Query: 463 MQNSNFTEQYARYMGFH---PMQANSQPMNMFRFGSPTM-QNQIVSLPSSSCVPFS 514
MQN N + R H + A +Q +F +GS QN+I L S + +P S
Sbjct: 533 MQNDNRI-RGPRNPFLHCNDTLTATAQVPGLFTYGSQIAEQNEIQELLSGAVIPSS 587
>gi|297606720|ref|NP_001058876.2| Os07g0143200 [Oryza sativa Japonica Group]
gi|255677508|dbj|BAF20790.2| Os07g0143200 [Oryza sativa Japonica Group]
Length = 447
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/126 (58%), Positives = 91/126 (72%), Gaps = 7/126 (5%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KR + VDS E + ++R + RR+RAAEVHNLSERRRRDRINEK+R
Sbjct: 198 FKRGREELVDSLS-------EVADETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLR 250
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQEL+PHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM +G+ P+MFPG M MGMG+
Sbjct: 251 ALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQLMPPMGMGL 310
Query: 414 GPPPLP 419
+P
Sbjct: 311 NTACMP 316
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 18 NQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPS 52
NQ KP+ D ELVELLWQ+G VV + AQT+ + S
Sbjct: 18 NQKKPLLSDGELVELLWQDGGVV--AHAQTRHRSS 50
>gi|23495742|dbj|BAC19953.1| transcription factor BHLH9-like protein [Oryza sativa Japonica
Group]
gi|24059945|dbj|BAC21408.1| transcription factor BHLH9-like protein [Oryza sativa Japonica
Group]
Length = 417
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 128/236 (54%), Gaps = 36/236 (15%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KR + VDS E + ++R + RR+RAAEVHNLSERRRRDRINEK+R
Sbjct: 197 FKRGREELVDSLS-------EVADETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLR 249
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQEL+PHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM +G+ P+MFPG M MGMG+
Sbjct: 250 ALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQLMPPMGMGL 309
Query: 414 GPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASV-----------LNPVNYQNQ 462
+P Q+ + Q Q S+ +N + +
Sbjct: 310 NTACMPGA-------------QAQGLNQMQRTTYYMNNSLPNQMPQIPSPAMNAPSVPDD 356
Query: 463 MQNSNFTEQYARYMGFH---PMQANSQPMNMFRFGSPTM-QNQIVSLPSSSCVPFS 514
MQN N + R H + A +Q +F +GS QN+I L S + +P S
Sbjct: 357 MQNDNRI-RGPRNPFLHCNDTLTATAQVPGLFTYGSQIAEQNEIQELLSGAVIPSS 411
>gi|359744468|gb|AEV57494.1| rice phytochrome-interacting factor 4 [Oryza sativa Japonica Group]
Length = 414
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 130/236 (55%), Gaps = 36/236 (15%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KR + VDS SE A + ++R + RR+RAAEVHNLSERRRRDRINEK+R
Sbjct: 194 FKRGREELVDS--LSEVAD-----ETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLR 246
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQEL+PHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM +G+ P+MFPG M MGMG+
Sbjct: 247 ALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQLMPPMGMGL 306
Query: 414 GPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASV-----------LNPVNYQNQ 462
+P Q+ + Q Q S+ +N + +
Sbjct: 307 NTACMPGA-------------QAQGLNQMQRTTYYMNNSLPNQMPQIPSPAMNAPSVPDD 353
Query: 463 MQNSNFTEQYARYMGFH---PMQANSQPMNMFRFGSPTM-QNQIVSLPSSSCVPFS 514
MQN N + R H + A +Q +F +GS QN+I L S + +P S
Sbjct: 354 MQNDNRI-RGPRNPFLHCNDTLTATAQVPGLFTYGSQIAEQNEIQELLSGAVIPSS 408
>gi|255543048|ref|XP_002512587.1| conserved hypothetical protein [Ricinus communis]
gi|223548548|gb|EEF50039.1| conserved hypothetical protein [Ricinus communis]
Length = 758
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/146 (59%), Positives = 104/146 (71%), Gaps = 7/146 (4%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQ 323
+T EP V SSS SG+S R S + +LKRK R+ +SE SE ES G K A
Sbjct: 397 KTAEPIVASSSVCSGNSMERVSDEPM--QNLKRKHRETEESEGPSEDVEEESVGGKKAAP 454
Query: 324 RSGSC--RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
G +RSRAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 455 ARGGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTL 514
Query: 382 QLQLQVMWMGSGM---APLMFPGMQH 404
QLQ+Q+M MG+G+ + ++ PG+ H
Sbjct: 515 QLQVQIMSMGAGLYMPSMMLPPGVPH 540
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 41/116 (35%)
Query: 24 GQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRG-----SGSCGNSSN- 77
G +N+ +EL+W+NG + Q+ RK S VQ QT + S GN +N
Sbjct: 33 GPENDFLELVWENGQI----QSSRARKIS------NGVQSQTSKFRDKDISIGIGNGNNT 82
Query: 78 -------------------------LIQDDETVSWIHCPIEDSFEKDFYSQLFSEL 108
L Q+D+ V W++ PI+DS ++D+ + +EL
Sbjct: 83 KMGRFGAMDFGLDEVPMSVPSVEMGLNQEDDMVPWLNDPIDDSLQQDYCHEFLAEL 138
>gi|224069945|ref|XP_002303090.1| predicted protein [Populus trichocarpa]
gi|222844816|gb|EEE82363.1| predicted protein [Populus trichocarpa]
Length = 615
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 145/299 (48%), Gaps = 34/299 (11%)
Query: 218 CSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGS 277
C M + S C S MS + D RK +E I ++T + G
Sbjct: 259 CEMTSTSSPGCSSASAELPALMS-----PVEDRKRKGREEEAECHSEFIAISITMAHGNQ 313
Query: 278 GSSFN-RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEV 336
S R Q++ D+S + R D+ + A FES K + S S +RSRAAEV
Sbjct: 314 PQSVAIRQKTQNSADSSKPLQGRR--DAANPLKDAEFESADAKKRIRGSMSSKRSRAAEV 371
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 396
HNLSERRRRDRINEKMRALQELIP CNK+DKASMLDEAIEYLKSLQLQ+Q+M MG M P
Sbjct: 372 HNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVP 431
Query: 397 LMFPGMQHYMSRMGMGMGPPPLPSVTNPMH-FSRV-------------PLVDQSMSMAQA 442
+MFPG Q YM MG+GMG ++ PM F + LV +
Sbjct: 432 MMFPGFQQYMPPMGIGMGMGMEMGLSRPMMPFPNILAGAPSATPAAAAHLVPRFPVPPFH 491
Query: 443 QNRAVMCQASVLNPVNYQNQMQNS------------NFTEQYARYMGFHPMQANSQPMN 489
S + P N + M S NF + Y Y+G + M P N
Sbjct: 492 VPPIPAPDPSRVQPTNQVDPMLGSPGQQNPNQPRVPNFVDPYQHYLGLYQMHLPGVPRN 550
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 1 MNPCIPDWNFEGDIPI-------SNQMKPMGQDNELVELLWQNGHVVLSSQ-AQTQRKPS 52
MNP +PD+ + D + + KP Q+ E++ELLWQNG VV+ SQ +Q + P
Sbjct: 1 MNPYVPDFEMDDDYSLPPPPSTHTRPRKPAMQEEEIMELLWQNGQVVMHSQRSQKKSSPP 60
Query: 53 LNHNEPRQVQKQTLRGSGSCGNSSN--------LIQDDETVSWIHCPIEDS-FEKDFYSQ 103
+ + + L G+ +S + +Q+DE SW++ P+ D+ F+ DF +
Sbjct: 61 PSELDDAVLPADQLPGTKEIRSSHDQQQEHHHLFMQEDEMASWLNHPLNDTNFDHDFCAD 120
Query: 104 LFSELPPSG 112
L PP+
Sbjct: 121 LL--YPPTA 127
>gi|356536868|ref|XP_003536955.1| PREDICTED: transcription factor PIF1-like [Glycine max]
Length = 491
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 89/111 (80%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRA 354
KRK R+ +SE QSE FES K + S S +RS AAEVHNLSERRRRDRINEKM+A
Sbjct: 239 KRKGREQEESEYQSEDVDFESPEAKKQVRGSTSTKRSHAAEVHNLSERRRRDRINEKMKA 298
Query: 355 LQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHY 405
LQELIP CNK+DKASMLDEAIEYLKSLQLQ+Q+M MG GM P++FPG+Q Y
Sbjct: 299 LQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMIFPGIQQY 349
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 9/93 (9%)
Query: 7 DWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQ---TQRKPSLNHNEPRQVQK 63
D + E IP+S KP Q++E++ELLWQNG VV+ +Q Q ++ P+ + + P +
Sbjct: 3 DDDEEYPIPVSK--KPSTQNDEIMELLWQNGQVVMQNQNQRPFRKQPPTTDGDGP--IPA 58
Query: 64 QTLRGS-GSCGNSSNL-IQDDETVSWIHCPIED 94
+ +R S NS +L +Q+DE SW+H PI +
Sbjct: 59 REIRSSEAENYNSQHLFMQEDEMASWLHYPIHE 91
>gi|168023762|ref|XP_001764406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684270|gb|EDQ70673.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1015
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 117/188 (62%), Gaps = 30/188 (15%)
Query: 254 VISPSERGKT------ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQ 307
V++ S++G + + EPT+TSSSGG G+S K T + KRK + ++ECQ
Sbjct: 650 VLASSDKGASHGTQHPDVQEPTITSSSGGYGTSIEPLQKVRTSN---KRKCSEREETECQ 706
Query: 308 SEAAGFESGAGNK---TAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
SE ES T R + +RSRAAEVHN SERRRRDRINEKMRALQELIP+ NK
Sbjct: 707 SEDGEDESVDTKHKPITTGRGSTTKRSRAAEVHNQSERRRRDRINEKMRALQELIPNSNK 766
Query: 365 TDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP---LMFPGMQHY---------------M 406
TDKASMLDEAI+YLK LQLQLQ+M + +GM +M PG+QH M
Sbjct: 767 TDKASMLDEAIDYLKILQLQLQMMSIRTGMTLPPMVMPPGLQHMQMPQMPQVAAMPSMGM 826
Query: 407 SRMGMGMG 414
+MG+GMG
Sbjct: 827 VQMGLGMG 834
>gi|242084158|ref|XP_002442504.1| hypothetical protein SORBIDRAFT_08g021000 [Sorghum bicolor]
gi|241943197|gb|EES16342.1| hypothetical protein SORBIDRAFT_08g021000 [Sorghum bicolor]
Length = 531
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 130/223 (58%), Gaps = 33/223 (14%)
Query: 211 TQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTV 270
T E E SM+T+GSS CGSN V + ++ G DV V++ + T+T
Sbjct: 200 TATEGAESSMLTIGSSFCGSNHV-------QTTTGGAGTDVVVVVARARGAATDT----- 247
Query: 271 TSSSGGSGSSFNRTSKQSTGD--------NSLKRK-SRDAVDSE-CQSEAAGFESGAGNK 320
SS+ S S R G S KRK S DA D+E + E+A +K
Sbjct: 248 -SSATRSRSCTTRNEHPCPGAAAAAAAAHRSGKRKQSVDATDAEDVEFESADVTCEPAHK 306
Query: 321 TAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKS 380
TA + +R RAAEVHNLSERRRRDRINEKM+ALQELIPHCNKTDKASMLDEAIEYLKS
Sbjct: 307 TA----TAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKS 362
Query: 381 LQLQLQ----VMWMGSGMAPLMFP-GMQHYMSRM-GMGMGPPP 417
LQLQLQ M + AP++FP G+ YM RM G PPP
Sbjct: 363 LQLQLQMMWMGGGMAAAAAPVVFPAGVHQYMQRMVAAGPAPPP 405
>gi|110737548|dbj|BAF00716.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 407
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 142/429 (33%), Positives = 200/429 (46%), Gaps = 91/429 (21%)
Query: 78 LIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAV 137
IQ+DE SW+H P+ D DF S L +
Sbjct: 14 FIQEDEMTSWLHYPLRDG---DFCSDL--------------------------------L 38
Query: 138 TSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPPKGELGP 197
S+ + V ++ A PP +++ P +N +NFS+
Sbjct: 39 FSAAPTATATATVSQV--TAARPPVSSTNESRPPVRNF------MNFSR----------- 79
Query: 198 CSGQFDRKRSGN----LTQGEVRECSMMT------VGSSHCGSNQVAYDLDMSRASSSGL 247
G F+ R G L++ VRE + ++ +S G + D S + G
Sbjct: 80 LRGDFNNGRGGESGPLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGA 139
Query: 248 NDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQ 307
+ K ++ + IE T TSSS S S + T + KRK R+A ++ +
Sbjct: 140 YNRKGKAVAMT----APAIEITGTSSSVVSKSEIE---PEKTNVDDRKRKEREATTTD-E 191
Query: 308 SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDK 367
+E+ E+ + + S +RSRAAEVHNLSER+RRDRINE+M+ALQELIP CNK+DK
Sbjct: 192 TESRSEETKQARVS---TTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDK 248
Query: 368 ASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMG-----PPPLPSVT 422
ASMLDEAIEY+KSLQLQ+Q+M MG GM P+M+PGMQ YM M MGMG PPP
Sbjct: 249 ASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPF 308
Query: 423 NPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQN---------SNFTEQYA 473
M ++ PL Q+ V AS + V NQ + + +T+ Y
Sbjct: 309 PNMLAAQRPLPTQTHMAGSGPQYPV--HASDPSRVFVPNQQYDPTSGQPQYPAGYTDPYQ 366
Query: 474 RYMGFHPMQ 482
++ G HP Q
Sbjct: 367 QFRGLHPTQ 375
>gi|30680903|ref|NP_849996.1| transcription factor PIF1 [Arabidopsis thaliana]
gi|119935961|gb|ABM06045.1| At2g20180 [Arabidopsis thaliana]
gi|330251884|gb|AEC06978.1| transcription factor PIF1 [Arabidopsis thaliana]
Length = 407
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 142/429 (33%), Positives = 200/429 (46%), Gaps = 91/429 (21%)
Query: 78 LIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAV 137
IQ+DE SW+H P+ D DF S L +
Sbjct: 14 FIQEDEMTSWLHYPLRDD---DFCSDL--------------------------------L 38
Query: 138 TSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPPKGELGP 197
S+ + V ++ A PP +++ P +N +NFS+
Sbjct: 39 FSAAPTATATATVSQV--TAARPPVSSTNESRPPVRNF------MNFSR----------- 79
Query: 198 CSGQFDRKRSGN----LTQGEVRECSMMT------VGSSHCGSNQVAYDLDMSRASSSGL 247
G F+ R G L++ VRE + ++ +S G + D S + G
Sbjct: 80 LRGDFNNGRGGESGPLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGA 139
Query: 248 NDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQ 307
+ K ++ + IE T TSSS S S + T + KRK R+A ++ +
Sbjct: 140 YNRKGKAVAMT----APAIEITGTSSSVVSKSEIE---PEKTNVDDRKRKEREATTTD-E 191
Query: 308 SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDK 367
+E+ E+ + + S +RSRAAEVHNLSER+RRDRINE+M+ALQELIP CNK+DK
Sbjct: 192 TESRSEETKQARVS---TTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDK 248
Query: 368 ASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMG-----PPPLPSVT 422
ASMLDEAIEY+KSLQLQ+Q+M MG GM P+M+PGMQ YM M MGMG PPP
Sbjct: 249 ASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPF 308
Query: 423 NPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQN---------SNFTEQYA 473
M ++ PL Q+ V AS + V NQ + + +T+ Y
Sbjct: 309 PNMLAAQRPLPTQTHMAGSGPQYPV--HASDPSRVFVPNQQYDPTSGQPQYPAGYTDPYQ 366
Query: 474 RYMGFHPMQ 482
++ G HP Q
Sbjct: 367 QFRGLHPTQ 375
>gi|226502090|ref|NP_001146660.1| uncharacterized protein LOC100280260 [Zea mays]
gi|219888217|gb|ACL54483.1| unknown [Zea mays]
gi|414868921|tpg|DAA47478.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 397
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/188 (48%), Positives = 112/188 (59%), Gaps = 21/188 (11%)
Query: 208 GNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIE 267
G T + S++TV SS CGSN + +A++ G R V+ + T +
Sbjct: 148 GTATATDGAGSSVLTVVSSLCGSNG-----NHVQATAPGDVARARDVLMVTSSSTTRSRS 202
Query: 268 PTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS 327
T S G G R S KRK DA D+E + G + AQR+ +
Sbjct: 203 CTTKSEQPGPGPGAARRSG--------KRKHNDATDAE--------DVGLECEPAQRTTT 246
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+R RAA+VHNLSERRRRDRINEKM+ALQELIPHCNK DKASMLDEAIEYLKSLQLQLQV
Sbjct: 247 AKRRRAAQVHNLSERRRRDRINEKMKALQELIPHCNKADKASMLDEAIEYLKSLQLQLQV 306
Query: 388 MWMGSGMA 395
+WMG G+A
Sbjct: 307 VWMGGGIA 314
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 40/114 (35%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMG--QDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEP 58
M+ IPDW+ + + P+G D+ L+EL+W+NGHVV+ QAQ RKP P
Sbjct: 24 MSHYIPDWSSS----MGDTFAPLGGEDDDGLIELMWRNGHVVM--QAQAPRKP------P 71
Query: 59 RQVQKQTLRGSGSCGNSSNLIQDDE-----TVSWIHCPIEDSFEKDFYSQLFSE 107
R DDE +W P+E+ D +S+LF E
Sbjct: 72 RP-------------------DDDEAAAAQAQAWFQYPVEE--RADLFSELFGE 104
>gi|168024155|ref|XP_001764602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684180|gb|EDQ70584.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 801
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 111/170 (65%), Gaps = 16/170 (9%)
Query: 254 VISPSERGKTETI------EPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQ 307
V++ SE+G + EPT+TSSSG +S + TG KRKS + + ECQ
Sbjct: 511 VLASSEKGASHCTQHLDIQEPTITSSSGRYATSAEPPKEPVTG---TKRKSSEREEPECQ 567
Query: 308 SEAAGFESGAGNK---TAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
SE ES + T R + +RSRAAEVHN SERRRRDRINEKMRALQELIP+ NK
Sbjct: 568 SEDMEDESVDTKQKPATTGRVSTTKRSRAAEVHNQSERRRRDRINEKMRALQELIPNSNK 627
Query: 365 TDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP---LMFPGMQHY-MSRMG 410
TDKASMLDEAIEYLK LQLQLQ+M + +GM +M PG+QH M +MG
Sbjct: 628 TDKASMLDEAIEYLKMLQLQLQMMSIRTGMTLPPMVMPPGLQHMQMPQMG 677
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 79 IQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHTRQLRE 125
+ DE VSW+ P++D+ E+++ S F ELP D +T+ L+E
Sbjct: 204 VDSDEMVSWLQYPLDDTLERNYCSDFFGELP-------DANTQLLKE 243
>gi|42567227|ref|NP_194608.3| transcription factor bHLH23 [Arabidopsis thaliana]
gi|75313939|sp|Q9SVU6.1|BH023_ARATH RecName: Full=Transcription factor bHLH23; AltName: Full=Basic
helix-loop-helix protein 23; Short=AtbHLH23; Short=bHLH
23; AltName: Full=Transcription factor EN 107; AltName:
Full=bHLH transcription factor bHLH023
gi|4218119|emb|CAA22973.1| putative protein [Arabidopsis thaliana]
gi|7269734|emb|CAB81467.1| putative protein [Arabidopsis thaliana]
gi|225898825|dbj|BAH30543.1| hypothetical protein [Arabidopsis thaliana]
gi|332660145|gb|AEE85545.1| transcription factor bHLH23 [Arabidopsis thaliana]
Length = 413
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 144/428 (33%), Positives = 191/428 (44%), Gaps = 103/428 (24%)
Query: 16 ISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNS 75
IS + MG+D+ +VELL ++ VV SSQ QT PS + P + LRGSGS
Sbjct: 15 ISPEKYIMGEDD-IVELLGKSSQVVTSSQTQT---PSCD---PPLI----LRGSGSGDGE 63
Query: 76 SN----------------LIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKH 119
N IQ+DE SW+H P + L+S+L SG
Sbjct: 64 GNGPLPQPPPPLYHQQSLFIQEDEMASWLHQPNRQDY-------LYSQLLYSG------- 109
Query: 120 TRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAA--PQNKNLGD 177
+S HP S+ P PPPR + AA P L +
Sbjct: 110 ------------------VASTHPQSLASLEPP------PPPRAQYILAADRPTGHILAE 145
Query: 178 LGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVREC-SMMTVGSSHCGSNQVAYD 236
+ NF R+R GN+ G V S T+ SS S +
Sbjct: 146 R-RAENFMN---------------ISRQR-GNIFLGGVEAVPSNSTLLSSATESIPATHG 188
Query: 237 LDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSL-- 294
+ SRA+ +G V RGK IE T S G + +Q + +
Sbjct: 189 TE-SRATVTGGVSRTFAVPGLGPRGKAVAIETAGTQSWGLCKAETEPVQRQPATETDITD 247
Query: 295 --KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKM 352
KRK+R+ + E Q G + A+ S S +RSRAA +H LSERRRR +INE M
Sbjct: 248 ERKRKTREETNVENQ----------GTEEARDSTSSKRSRAAIMHKLSERRRRQKINEMM 297
Query: 353 RALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA-PLMFPG--MQHYMSRM 409
+ALQEL+P C KTD++SMLD+ IEY+KSLQ Q+Q+ MG M P+M+ G Q YM M
Sbjct: 298 KALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQMFSMGHVMIPPMMYAGNIQQQYMPHM 357
Query: 410 GMGMGPPP 417
MGM PP
Sbjct: 358 AMGMNRPP 365
>gi|449454115|ref|XP_004144801.1| PREDICTED: transcription factor PIF3-like [Cucumis sativus]
gi|449522990|ref|XP_004168508.1| PREDICTED: transcription factor PIF3-like [Cucumis sativus]
Length = 696
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 84/110 (76%), Gaps = 3/110 (2%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNK-TAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KRK D DSE S+ + + T+ R +RSRAAEVHNLSERRRRDRINEKMR
Sbjct: 424 KRKCHDTEDSEWHSDDVEEDCNDVKRVTSARGAGSKRSRAAEVHNLSERRRRDRINEKMR 483
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG--MAPLMFPG 401
ALQELIP+CNK DKASMLDEAIEYLK+LQLQ+Q+M MG+G M P+MFPG
Sbjct: 484 ALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLFMPPMMFPG 533
>gi|371534690|gb|AEX32796.1| phytochrome-interacting factor 3 [Malus x domestica]
Length = 713
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 93/130 (71%), Gaps = 4/130 (3%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFES-GAGNKTA 322
+T+EP V SS SG+S R S T +LKRK R+ +SEC S+ E G
Sbjct: 389 KTVEPVVASSVC-SGNSVERGSDDPT--QALKRKFRETDESECHSDDVEEEYMGVKKGDH 445
Query: 323 QRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
R +RSRAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+LQ
Sbjct: 446 ARGMGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQ 505
Query: 383 LQLQVMWMGS 392
LQ+Q+M MG+
Sbjct: 506 LQVQMMSMGA 515
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 25/108 (23%)
Query: 26 DNELVELLWQNGHVVLSSQ-AQTQRKPSLN----HNEP----RQVQKQTLRGSGSCG--- 73
+N+ +EL+W+NG VV+ Q ++T++ PS N +N P R V + +G G
Sbjct: 20 ENDFLELVWENGQVVMQGQSSRTRKNPSCNTLPSYNTPKNRDRDVGNSNIGKTGKFGFVV 79
Query: 74 -------------NSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSEL 108
+ L +DD+T+ W++ I++ ++ E
Sbjct: 80 DSELDEIPLSVPSSEMGLSEDDDTLPWLNYSIDEPLHHEYCHDFLPEF 127
>gi|357128032|ref|XP_003565680.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF3-like
[Brachypodium distachyon]
Length = 614
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 202/458 (44%), Gaps = 107/458 (23%)
Query: 27 NELVELLWQNGHVVL-----------------SSQAQTQRKPSLNHNEPRQVQKQTLRGS 69
NE ELLW+NG V+ SS Q + N + + G
Sbjct: 63 NEFAELLWENGQAVVHGRRKHPQPSFQPFGTGSSGVQEKHPGGAGDNMMAFTKAAGVFGG 122
Query: 70 GSCGNSSNLIQ----DDETVSWIHCPI-EDS------------FEKDFYSQL------FS 106
+ ++ +Q DD+ V WIH PI ED + DF+S+L
Sbjct: 123 MGIHDLASGLQHENGDDDAVPWIHYPIMEDDNNNNAPALTTADYSSDFFSELQEAAANLG 182
Query: 107 ELPPSG---------PME-----VDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVV-- 150
LPPS P+ K + L +P + +++ P + SV+
Sbjct: 183 SLPPSNHSTNNNRGTPVAGSSRAASKEIQGLSALTTRTAEPQAELAAAKQPRPSDSVMNF 242
Query: 151 -----------PELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPPKGELGPCS 199
LQ P +V +AA N+ + Q+T+ P+ GP
Sbjct: 243 SLFSRPAALARATLQSAHRPQGTDKVPNAAANNRMESTV------IQTTSGPR--TGPV- 293
Query: 200 GQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSE 259
F +R+ Q EVR + +S G+ Q D + D RK
Sbjct: 294 --FVDQRAAWPQQKEVRFAPAPALTAS-VGNLQQEMARDKLSNNRVVHKDAARKAP---- 346
Query: 260 RGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSEC---QSEAAGFESG 316
+ TVT+SS SG+ D ++ R + +EC Q E ESG
Sbjct: 347 -------DATVTTSSVCSGNGI-------VNDEPWHQQKRK-IQAECSASQDEDLDDESG 391
Query: 317 AGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIE 376
A ++ RS +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIE
Sbjct: 392 ALLRSTNRS--MKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIE 449
Query: 377 YLKSLQLQLQVMWMGSGMA--PLMF-PGMQHY-MSRMG 410
YLK+LQLQ+Q+M MG+G+ P++ P MQH +S+M
Sbjct: 450 YLKTLQLQVQMMSMGTGLCIPPMLLPPAMQHLQLSQMA 487
>gi|238015240|gb|ACR38655.1| unknown [Zea mays]
Length = 435
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 100/153 (65%), Gaps = 15/153 (9%)
Query: 260 RGKTETIEPTVTSS-SGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSEC---QSEAAGFES 315
R +E T TSS G+G+ + D S +++ R + +EC Q + ES
Sbjct: 113 RKASEAAGATATSSVCSGNGAGTGKD------DESWRQQKRKTLQAECSASQDDDPDDES 166
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G ++ R +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAI
Sbjct: 167 GGMRRSCSRGA--KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAI 224
Query: 376 EYLKSLQLQLQVMWMGSGMA--PLMF-PGMQHY 405
EYLK+LQLQ+Q+M MGSG+ P++ P MQH
Sbjct: 225 EYLKTLQLQVQMMSMGSGLCIPPMLLPPAMQHL 257
>gi|238008194|gb|ACR35132.1| unknown [Zea mays]
gi|413946840|gb|AFW79489.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 638
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 100/153 (65%), Gaps = 15/153 (9%)
Query: 260 RGKTETIEPTVTSS-SGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSEC---QSEAAGFES 315
R +E T TSS G+G+ + D S +++ R + +EC Q + ES
Sbjct: 316 RKASEAAGATATSSVCSGNGAGTGKD------DESWRQQKRKTLQAECSASQDDDPDDES 369
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G ++ R +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAI
Sbjct: 370 GGMRRSCSRG--AKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAI 427
Query: 376 EYLKSLQLQLQVMWMGSGMA--PLMF-PGMQHY 405
EYLK+LQLQ+Q+M MGSG+ P++ P MQH
Sbjct: 428 EYLKTLQLQVQMMSMGSGLCIPPMLLPPAMQHL 460
>gi|242074344|ref|XP_002447108.1| hypothetical protein SORBIDRAFT_06g028750 [Sorghum bicolor]
gi|241938291|gb|EES11436.1| hypothetical protein SORBIDRAFT_06g028750 [Sorghum bicolor]
Length = 188
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 93/146 (63%), Gaps = 16/146 (10%)
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
+ RRSR+AE HN SERRRRDRINEK++ALQEL+P+C KTDK SMLDEAI+YLKSLQLQLQ
Sbjct: 14 TTRRSRSAEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQ 73
Query: 387 VMWMGSGMAPLMFPGMQHYMSRMGM--GMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQN 444
++ MG GMAP++ P +Q YM + PP PS P F ++ A Q
Sbjct: 74 MLVMGKGMAPVVPPELQQYMHYITADPAQMPPLRPSGQQPRQF--------QITQANPQQ 125
Query: 445 RAVMCQASVLNPVNYQNQMQNSNFTE 470
R ++ L +QMQN N +E
Sbjct: 126 RQSNVESDFL------SQMQNLNPSE 145
>gi|413917616|gb|AFW57548.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 505
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 102/167 (61%), Gaps = 19/167 (11%)
Query: 248 NDDVRKVISPSERGKTETIEP---TVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVD- 303
+ V V P R + E P VT+SS SG+ G + LKR A D
Sbjct: 245 GETVGTVAQPQPRSQPEARPPDAAAVTTSSVCSGNG---------GRSQLKRSRHLAADC 295
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
S E E GA ++A RS +R R AEVHNLSERRRRDRINEKMRALQELIP+CN
Sbjct: 296 SVSPDEDLDDEPGATRRSAARSA--KRCRTAEVHNLSERRRRDRINEKMRALQELIPNCN 353
Query: 364 KTDKASMLDEAIEYLKSLQLQLQVMWMGSGM----APLMFPGMQHYM 406
K DK+SML+EAIEYLK+LQLQ+Q+M MG+G+ A ++ P MQ +
Sbjct: 354 KVDKSSMLEEAIEYLKTLQLQVQMMSMGTGLCMPPAAMLLPAMQQQL 400
>gi|56784181|dbj|BAD81566.1| putative BP-5 protein [Oryza sativa Japonica Group]
Length = 565
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 96/147 (65%), Gaps = 18/147 (12%)
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKR--KSRDAVDSEC---QSEAAGFESGAGNKT 321
E TV +SS SG+ G + L R K + +EC Q + E G K+
Sbjct: 252 EATVATSSVCSGNG--------AGSDELWRQQKRKCQAQAECSASQDDDLDDEPGVLRKS 303
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
RS +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 304 GTRS--TKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTL 361
Query: 382 QLQLQVMWMGSGMA--PLMFP-GMQHY 405
QLQ+Q+M MG+G+ P++ P MQH
Sbjct: 362 QLQVQMMSMGTGLCIPPMLLPTAMQHL 388
>gi|357511681|ref|XP_003626129.1| Transcription factor PIF3 [Medicago truncatula]
gi|355501144|gb|AES82347.1| Transcription factor PIF3 [Medicago truncatula]
Length = 682
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 121/204 (59%), Gaps = 29/204 (14%)
Query: 240 SRASSSGLNDDVRKV-------ISPSERGKTETI----EPTVTSSSGGSGSSFNRTSKQS 288
+ S+S +DV KV +S S R E E TV SSS S + +R+S +
Sbjct: 326 TTVSTSACKEDVSKVDQTSNQVLSESSRKGQEVFKKCTELTVASSSVCSDNGVHRSSDDA 385
Query: 289 TGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG--SCRRSRAAEVHNLSERRRRD 346
+ +LKRK+ D+ DSE SE ES +T G +++R+ EVHNLSERRRRD
Sbjct: 386 --NQNLKRKNLDSEDSEWHSEDFEDESIGVKRTDHGRGVTGSKKNRSTEVHNLSERRRRD 443
Query: 347 RINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG--MAPLMFP-GMQ 403
RINE+MRALQELIP+CNK DKASMLDEAIEYLKSLQLQLQ+M MG G P+ P GMQ
Sbjct: 444 RINERMRALQELIPNCNKADKASMLDEAIEYLKSLQLQLQIMSMGGGGLYMPMTLPAGMQ 503
Query: 404 HYMS-----------RMGMGMGPP 416
H + M MG+G P
Sbjct: 504 HMHAAHMFPFSPMSVAMQMGLGVP 527
>gi|297596562|ref|NP_001042775.2| Os01g0286100 [Oryza sativa Japonica Group]
gi|215717101|dbj|BAG95464.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673123|dbj|BAF04689.2| Os01g0286100 [Oryza sativa Japonica Group]
Length = 637
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 96/147 (65%), Gaps = 18/147 (12%)
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKR--KSRDAVDSEC---QSEAAGFESGAGNKT 321
E TV +SS SG+ G + L R K + +EC Q + E G K+
Sbjct: 324 EATVATSSVCSGNG--------AGSDELWRQQKRKCQAQAECSASQDDDLDDEPGVLRKS 375
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
RS +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 376 GTRS--TKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTL 433
Query: 382 QLQLQVMWMGSGMA--PLMFP-GMQHY 405
QLQ+Q+M MG+G+ P++ P MQH
Sbjct: 434 QLQVQMMSMGTGLCIPPMLLPTAMQHL 460
>gi|222618221|gb|EEE54353.1| hypothetical protein OsJ_01348 [Oryza sativa Japonica Group]
Length = 705
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 96/147 (65%), Gaps = 18/147 (12%)
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKR--KSRDAVDSEC---QSEAAGFESGAGNKT 321
E TV +SS SG+ G + L R K + +EC Q + E G K+
Sbjct: 392 EATVATSSVCSGNG--------AGSDELWRQQKRKCQAQAECSASQDDDLDDEPGVLRKS 443
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
RS +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 444 GTRS--TKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTL 501
Query: 382 QLQLQVMWMGSGMA--PLMFP-GMQHY 405
QLQ+Q+M MG+G+ P++ P MQH
Sbjct: 502 QLQVQMMSMGTGLCIPPMLLPTAMQHL 528
>gi|218188008|gb|EEC70435.1| hypothetical protein OsI_01449 [Oryza sativa Indica Group]
Length = 693
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 96/147 (65%), Gaps = 18/147 (12%)
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKR--KSRDAVDSEC---QSEAAGFESGAGNKT 321
E TV +SS SG+ G + L R K + +EC Q + E G K+
Sbjct: 380 EATVATSSVCSGNG--------AGSDELWRQQKRKCQAQAECSASQDDDLDDEPGVLRKS 431
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
RS +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+L
Sbjct: 432 GTRS--TKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTL 489
Query: 382 QLQLQVMWMGSGMA--PLMFP-GMQHY 405
QLQ+Q+M MG+G+ P++ P MQH
Sbjct: 490 QLQVQMMSMGTGLCIPPMLLPTAMQHL 516
>gi|242086827|ref|XP_002439246.1| hypothetical protein SORBIDRAFT_09g003090 [Sorghum bicolor]
gi|241944531|gb|EES17676.1| hypothetical protein SORBIDRAFT_09g003090 [Sorghum bicolor]
Length = 480
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/140 (56%), Positives = 94/140 (67%), Gaps = 18/140 (12%)
Query: 269 TVTSSSGGSGSSFNRTSKQSTGDNS-LKRKSRDAVD-SECQSEAAGFESGAGNKTAQRSG 326
VT+SS SG+ GD S LKR A D S E E GA ++A RS
Sbjct: 208 AVTASSVCSGN----------GDRSQLKRSCHLAADCSVSPDEDMDDEPGATRRSAARSA 257
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
+RSR AEVHN+SERRRRDRINEKMRALQELIP+CNK DKASML+EAIEYLK+LQLQ+Q
Sbjct: 258 --KRSRTAEVHNMSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQ 315
Query: 387 VMWMGSGM----APLMFPGM 402
+M MG+G+ A ++ P M
Sbjct: 316 MMSMGTGLCMPPAAMLLPAM 335
>gi|357165982|ref|XP_003580559.1| PREDICTED: transcription factor PIF1-like [Brachypodium distachyon]
Length = 198
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 74/94 (78%)
Query: 313 FESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLD 372
E G + + + RRSR+A+ HN SERRRRDRINEK++ALQEL+P+C KTDK SMLD
Sbjct: 1 MEDGRAARRMSSAPTTRRSRSADFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLD 60
Query: 373 EAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYM 406
EAI+YLKSLQLQLQ++ MG GMAP++ P +Q YM
Sbjct: 61 EAIDYLKSLQLQLQMLVMGKGMAPVVPPELQQYM 94
>gi|226496303|ref|NP_001147052.1| protein SPATULA [Zea mays]
gi|195606902|gb|ACG25281.1| protein SPATULA [Zea mays]
Length = 215
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 78/112 (69%), Gaps = 6/112 (5%)
Query: 313 FESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLD 372
E G+ RRSR+A+ HN SERRRRDRINEK+RALQEL+P+C KTDK SMLD
Sbjct: 1 MEDGSSAPRRSTPAPTRRSRSADFHNFSERRRRDRINEKLRALQELLPNCTKTDKVSMLD 60
Query: 373 EAIEYLKSLQLQLQVMWMGS--GMAPLMFPGMQHYMSRM----GMGMGPPPL 418
EAI+YLKSLQLQLQ++ MG GMAP++ P +Q YM + M PPPL
Sbjct: 61 EAIDYLKSLQLQLQMLVMGKGGGMAPVVPPELQQYMHYITADPAHQMMPPPL 112
>gi|326500148|dbj|BAJ90909.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 493
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 87/136 (63%), Gaps = 14/136 (10%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
LKR S ++ + + AG + S +R R AEVHN+SERRRRDRINEKMR
Sbjct: 286 LKRSSHQTLEWSVSQDDEDLDDEAGGLRRSAARSTKRGRTAEVHNMSERRRRDRINEKMR 345
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-WMGSG---MAPLM------FPGMQ 403
ALQELIP+CNK DKASML+EAIEYLK+LQLQ+Q+M MG+ M P++ P M
Sbjct: 346 ALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQMMSTMGTAGMCMPPMLAMQHMQMPPMA 405
Query: 404 HY----MSRMGMGMGP 415
H+ + MG GMGP
Sbjct: 406 HFHHHHLGAMGFGMGP 421
>gi|326523485|dbj|BAJ92913.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 493
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 87/136 (63%), Gaps = 14/136 (10%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
LKR S ++ + + AG + S +R R AEVHN+SERRRRDRINEKMR
Sbjct: 286 LKRSSHQTLEWSVSQDDEDLDDEAGGLRRSAARSTKRGRTAEVHNMSERRRRDRINEKMR 345
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-WMGSG---MAPLM------FPGMQ 403
ALQELIP+CNK DKASML+EAIEYLK+LQLQ+Q+M MG+ M P++ P M
Sbjct: 346 ALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQMMSTMGTAGMCMPPMLAMQHMQMPPMA 405
Query: 404 HY----MSRMGMGMGP 415
H+ + MG GMGP
Sbjct: 406 HFHHHHLGAMGFGMGP 421
>gi|414877117|tpg|DAA54248.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 567
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 67/74 (90%), Gaps = 2/74 (2%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+LQLQ+Q+M
Sbjct: 349 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMM 408
Query: 389 WMGSGMA--PLMFP 400
MGSG+ P++ P
Sbjct: 409 AMGSGLCIPPMLLP 422
Score = 41.6 bits (96), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 33/115 (28%)
Query: 23 MGQDNELVELLWQNGHVVLSSQAQTQRKPSL-------------NHNEPRQVQKQTLRGS 69
M N+ VELLW+NG V+ + + + + N+P +L +
Sbjct: 1 MSDSNDFVELLWENGQAVVHGRRKQHPQAAFPPFTCGAASSSRAQENQPGTTDPVSLFKT 60
Query: 70 GS--CGNSSNLIQD------DETVSWIHCPI--EDS----------FEKDFYSQL 104
G SS L D+TV WIHCPI EDS + DF+S+L
Sbjct: 61 GGLFADFSSGLDAARGNGDLDDTVPWIHCPIVEEDSAAPAPALAEGYSPDFFSEL 115
>gi|326525038|dbj|BAK07789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 497
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 87/136 (63%), Gaps = 14/136 (10%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
LKR S ++ + + AG + S +R R AEVHN+SERRRRDRINEKMR
Sbjct: 290 LKRSSHQTLEWSVSQDDEDLDDEAGGLRRSAARSTKRGRTAEVHNMSERRRRDRINEKMR 349
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-WMGSG---MAPLM------FPGMQ 403
ALQELIP+CNK DKASML+EAIEYLK+LQLQ+Q+M MG+ M P++ P M
Sbjct: 350 ALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQMMSTMGTAGMCMPPMLAMQHMQMPPMA 409
Query: 404 HY----MSRMGMGMGP 415
H+ + MG GMGP
Sbjct: 410 HFHHHHLGAMGFGMGP 425
>gi|392513513|emb|CCE46185.1| bHLH transcription factor [Amborella trichopoda]
Length = 445
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 100/162 (61%), Gaps = 5/162 (3%)
Query: 258 SERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSR---DAVDSECQSEAAGFE 314
+ERG T + SG S +++S + + K+K+ D D +C+SE
Sbjct: 107 TERGVCGTSGLSEAGVSGRQSSIGDQSSPRRDSEPCKKKKAHNDTDLDDLDCESEEGQEP 166
Query: 315 SGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEA 374
S +K A S +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEA
Sbjct: 167 SEEMSKPAPSRSSTKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEA 226
Query: 375 IEYLKSLQLQLQVMWMGSG--MAPLMFPGMQHYMSRMGMGMG 414
IEYLK LQLQ+Q++ M SG +AP+ PG M + MG
Sbjct: 227 IEYLKQLQLQVQMLSMKSGINLAPMCMPGQLQSMQLPQICMG 268
>gi|414877115|tpg|DAA54246.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 377
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 67/74 (90%), Gaps = 2/74 (2%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+LQLQ+Q+M
Sbjct: 159 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMM 218
Query: 389 WMGSGMA--PLMFP 400
MGSG+ P++ P
Sbjct: 219 AMGSGLCIPPMLLP 232
>gi|87241328|gb|ABD33186.1| Helix-loop-helix DNA-binding [Medicago truncatula]
Length = 689
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 121/211 (57%), Gaps = 36/211 (17%)
Query: 240 SRASSSGLNDDVRKV-------ISPSERGKTETI----EPTVTSSSGGSGSSFNRTSKQS 288
+ S+S +DV KV +S S R E E TV SSS S + +R+S +
Sbjct: 326 TTVSTSACKEDVSKVDQTSNQVLSESSRKGQEVFKKCTELTVASSSVCSDNGVHRSSDDA 385
Query: 289 TGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG--SCRRSRAAEVHNLSERRRRD 346
+ +LKRK+ D+ DSE SE ES +T G +++R+ EVHNLSERRRRD
Sbjct: 386 --NQNLKRKNLDSEDSEWHSEDFEDESIGVKRTDHGRGVTGSKKNRSTEVHNLSERRRRD 443
Query: 347 RINEKMRALQELIPHCNKT-------DKASMLDEAIEYLKSLQLQLQVMWMGSG--MAPL 397
RINE+MRALQELIP+CNK DKASMLDEAIEYLKSLQLQLQ+M MG G P+
Sbjct: 444 RINERMRALQELIPNCNKVDLFFLQADKASMLDEAIEYLKSLQLQLQIMSMGGGGLYMPM 503
Query: 398 MFP-GMQHYMS-----------RMGMGMGPP 416
P GMQH + M MG+G P
Sbjct: 504 TLPAGMQHMHAAHMFPFSPMSVAMQMGLGVP 534
>gi|357129887|ref|XP_003566591.1| PREDICTED: transcription factor PIF1-like [Brachypodium distachyon]
Length = 448
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 96/169 (56%), Gaps = 33/169 (19%)
Query: 269 TVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSC 328
+V S +G R+S Q+ + SL + D D E+G ++A + S
Sbjct: 216 SVCSDNGDRSHQLKRSSHQAAAEWSLSQDDEDLDD----------EAGGLRRSAAGARST 265
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+R R AEVHN+SERRRRDRINEKMRALQELIP+CNK DKASML+EAIEYLK+LQLQ+Q+M
Sbjct: 266 KRGRTAEVHNMSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQMM 325
Query: 389 -WMG--SGMAPLMFPGM--------------------QHYMSRMGMGMG 414
MG + A L P M H++ MG GMG
Sbjct: 326 SSMGPAAAAAGLCVPPMLAMQMAPMGMGMGMGMAHFHHHHLGAMGFGMG 374
>gi|226493752|ref|NP_001140849.1| uncharacterized protein LOC100272925 [Zea mays]
gi|194690530|gb|ACF79349.1| unknown [Zea mays]
gi|194701428|gb|ACF84798.1| unknown [Zea mays]
gi|223949911|gb|ACN29039.1| unknown [Zea mays]
gi|413919543|gb|AFW59475.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 214
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 75/97 (77%), Gaps = 6/97 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RRSR+A+ HN SERRRRDRINEK+RALQEL+P+C KTDK SMLDEAI+YLKSLQLQLQ+
Sbjct: 15 TRRSRSADFHNFSERRRRDRINEKLRALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQM 74
Query: 388 MWMGS--GMAPLMFPGMQHYMSRM----GMGMGPPPL 418
+ MG GMAP++ P +Q YM + M PPPL
Sbjct: 75 LVMGKGGGMAPVVPPELQQYMHYITADPAHQMMPPPL 111
>gi|378924999|dbj|BAL63287.1| basic helix-loop-helix protein APG [Oryza sativa Japonica Group]
Length = 432
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%), Gaps = 3/87 (3%)
Query: 315 SGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEA 374
+G ++A RS +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASML+EA
Sbjct: 320 AGVHRRSAARSS--KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEA 377
Query: 375 IEYLKSLQLQLQVMWMGSGM-APLMFP 400
IEYLK+LQLQ+Q+M MG+GM P FP
Sbjct: 378 IEYLKTLQLQVQMMSMGTGMFVPPPFP 404
>gi|413932893|gb|AFW67444.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 387
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 348 INEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMS 407
I EKMRALQELIPHCNKTDKAS+LDE IEYLKSLQ+Q+Q+MWM SGM P++FPG YM
Sbjct: 205 IKEKMRALQELIPHCNKTDKASILDETIEYLKSLQMQVQIMWMTSGMVPMVFPGAHQYMP 264
Query: 408 RMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSN 467
M +GM +P+ R+P ++ M N + +NP+N NQ QN +
Sbjct: 265 PMALGMNSGCIPAAQGLSQMRRLPYMNHPMPNHIPLNSSPAMNP--MNPLNTVNQFQNGH 322
Query: 468 FTEQYARYM 476
E ++
Sbjct: 323 LREASNHFL 331
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 17 SNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSS 76
++Q K + D++LVELLW NG VV Q + P + + C +S
Sbjct: 10 ASQKKSIVPDDDLVELLWHNGSVVAQPQGHHRPAPPSDRD---------------CPGTS 54
Query: 77 NLIQDDETVSWIHCPIEDSFEKDFYSQLF 105
L +ET +W ++DS EKD Y+QL+
Sbjct: 55 GLTA-EETAAWFPDTLDDSLEKDLYTQLW 82
>gi|226491584|ref|NP_001147257.1| protein SPATULA [Zea mays]
gi|195609152|gb|ACG26406.1| protein SPATULA [Zea mays]
Length = 185
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 69/79 (87%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RRSR+AE HN SERRRRD+INEK++ALQEL+P+CNKTDK SMLDEAI+YLKSLQLQLQ+
Sbjct: 14 ARRSRSAEFHNFSERRRRDKINEKLKALQELLPNCNKTDKVSMLDEAIDYLKSLQLQLQM 73
Query: 388 MWMGSGMAPLMFPGMQHYM 406
+ MG GM+P++ +Q YM
Sbjct: 74 LVMGKGMSPVVPLELQQYM 92
>gi|226499484|ref|NP_001146943.1| protein SPATULA [Zea mays]
gi|195605542|gb|ACG24601.1| protein SPATULA [Zea mays]
gi|414585417|tpg|DAA35988.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 1
[Zea mays]
gi|414585418|tpg|DAA35989.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 2
[Zea mays]
gi|414585419|tpg|DAA35990.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 3
[Zea mays]
Length = 185
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 69/79 (87%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RRSR+AE HN SERRRRD+INEK++ALQEL+P+CNKTDK SMLDEAI+YLKSLQLQLQ+
Sbjct: 14 TRRSRSAEFHNFSERRRRDKINEKLKALQELLPNCNKTDKVSMLDEAIDYLKSLQLQLQM 73
Query: 388 MWMGSGMAPLMFPGMQHYM 406
+ MG GM+P++ +Q YM
Sbjct: 74 LVMGKGMSPVVPLELQQYM 92
>gi|115461987|ref|NP_001054593.1| Os05g0139100 [Oryza sativa Japonica Group]
gi|50511445|gb|AAT77368.1| hypothetical protein [Oryza sativa Japonica Group]
gi|51854388|gb|AAU10768.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578144|dbj|BAF16507.1| Os05g0139100 [Oryza sativa Japonica Group]
Length = 505
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 70/80 (87%), Gaps = 2/80 (2%)
Query: 315 SGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEA 374
+G ++A RS +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASML+EA
Sbjct: 320 AGVHRRSAARSS--KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEA 377
Query: 375 IEYLKSLQLQLQVMWMGSGM 394
IEYLK+LQLQ+Q+M MG+GM
Sbjct: 378 IEYLKTLQLQVQMMSMGTGM 397
>gi|218196060|gb|EEC78487.1| hypothetical protein OsI_18387 [Oryza sativa Indica Group]
Length = 289
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 70/80 (87%), Gaps = 2/80 (2%)
Query: 315 SGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEA 374
+G ++A RS +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASML+EA
Sbjct: 104 AGVHRRSAARSS--KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEA 161
Query: 375 IEYLKSLQLQLQVMWMGSGM 394
IEYLK+LQLQ+Q+M MG+GM
Sbjct: 162 IEYLKTLQLQVQMMSMGTGM 181
>gi|222630134|gb|EEE62266.1| hypothetical protein OsJ_17053 [Oryza sativa Japonica Group]
Length = 404
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 70/80 (87%), Gaps = 2/80 (2%)
Query: 315 SGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEA 374
+G ++A RS +RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK DKASML+EA
Sbjct: 199 AGVHRRSAARSS--KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEA 256
Query: 375 IEYLKSLQLQLQVMWMGSGM 394
IEYLK+LQLQ+Q+M MG+GM
Sbjct: 257 IEYLKTLQLQVQMMSMGTGM 276
>gi|255538250|ref|XP_002510190.1| conserved hypothetical protein [Ricinus communis]
gi|223550891|gb|EEF52377.1| conserved hypothetical protein [Ricinus communis]
Length = 312
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 123/233 (52%), Gaps = 30/233 (12%)
Query: 275 GGSGSSFNRTSKQS--TGDNSLKRK----SRDAVDSECQSEAAGFESGAGNKTAQRSGSC 328
GG GSS S Q S +R+ D D C SE + ++T + S
Sbjct: 62 GGGGSSSLNYSDQGGYFAKESAERRGVSMENDLGDLSCDSEKGAEVAEVPSETVRPRNSS 121
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++
Sbjct: 122 KRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQML 181
Query: 389 WMGSGMA--PLMFPG----MQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQA 442
M +G++ P+ PG MQ ++ M G L + + FS + S AQA
Sbjct: 182 TMRNGLSLHPMCLPGVLQPMQLPLTGMSFDEGGGLLNTNSATGAFS-----ENDESSAQA 236
Query: 443 Q----NRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPM-QANSQPMNM 490
NR + ++ P N T + GF P+ QA+ +P N+
Sbjct: 237 TLSLPNRCAVSNQPIILP-------STRNITSSETPF-GFEPLIQASGEPFNL 281
>gi|115460586|ref|NP_001053893.1| Os04g0618600 [Oryza sativa Japonica Group]
gi|38344324|emb|CAE02150.2| OSJNBa0058K23.6 [Oryza sativa Japonica Group]
gi|113565464|dbj|BAF15807.1| Os04g0618600 [Oryza sativa Japonica Group]
gi|218195592|gb|EEC78019.1| hypothetical protein OsI_17435 [Oryza sativa Indica Group]
gi|222629570|gb|EEE61702.1| hypothetical protein OsJ_16185 [Oryza sativa Japonica Group]
Length = 181
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 71/97 (73%), Gaps = 2/97 (2%)
Query: 334 AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG 393
AE HN SERRRRDRINEK++ALQEL+P+C KTDK SMLDEAI+YLKSLQLQLQ++ MG G
Sbjct: 15 AEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKG 74
Query: 394 MAPLMFPGMQHYMSRMGM--GMGPPPLPSVTNPMHFS 428
MAP++ P +Q YM + PP PS P +
Sbjct: 75 MAPVVPPELQQYMHYITADPSQIPPIRPSEPRPFQIT 111
>gi|359480799|ref|XP_002277966.2| PREDICTED: uncharacterized protein LOC100245665 [Vitis vinifera]
gi|296082405|emb|CBI21410.3| unnamed protein product [Vitis vinifera]
Length = 394
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 99/170 (58%), Gaps = 11/170 (6%)
Query: 251 VRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTG--DNSLKRKSRDAVDSECQS 308
+R+ SP + + SS+G T+ S G DN L D D E +
Sbjct: 61 LRQCRSPLISSSDRLVRDGMNSSTGVYFPVSAGTASSSAGGFDNDL-----DEYDCESEE 115
Query: 309 EAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKA 368
K A S +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ NKTDKA
Sbjct: 116 GLEALVEEVATKAAPLRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKA 175
Query: 369 SMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPGMQ--HYMSRMGMGMG 414
SMLDEAIEYLK LQLQ+Q++ M +G++ P+ PG+ +S+M +G+G
Sbjct: 176 SMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCLPGVLPPVQLSQMRIGIG 225
>gi|225437758|ref|XP_002273729.1| PREDICTED: uncharacterized protein LOC100253874 [Vitis vinifera]
Length = 569
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 100/146 (68%), Gaps = 15/146 (10%)
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESG---AGNK 320
+++EP + SSS S + N S SLK K +++ +SE S++ FE A
Sbjct: 318 KSVEPLLASSSTCSREASNYPSY------SLKSKCQESEESEHPSQS--FEEEPRRAEGA 369
Query: 321 TAQRSGSC--RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYL 378
+ R GS +R+R+AE H+LSE+RRRDRIN+KMR+LQELIP+C K DK S+LDEAI+YL
Sbjct: 370 MSTRGGSAGSKRNRSAEGHSLSEKRRRDRINKKMRSLQELIPNCKKVDKISILDEAIDYL 429
Query: 379 KSLQLQLQVMWMGSG--MAPLMFPGM 402
K+LQLQ+QVM MG+G MAP+M P +
Sbjct: 430 KTLQLQVQVMSMGAGMCMAPVMIPAV 455
>gi|356503978|ref|XP_003520776.1| PREDICTED: uncharacterized protein LOC100804665 [Glycine max]
Length = 513
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 76/95 (80%), Gaps = 4/95 (4%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
RR R VHNLSE++RR++IN+KMR L+ELIP+CNK DKASMLD+AI+YLK+L+LQLQ+M
Sbjct: 323 RRIRNPVVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIM 382
Query: 389 WMGSGMAPL-MFPG--MQHYMS-RMGMGMGPPPLP 419
MG+G+ PL M P H+M+ ++GMG PP LP
Sbjct: 383 SMGNGLWPLMMLPAATTAHHMNPQLGMGFRPPQLP 417
>gi|295881692|gb|ADG56590.1| ALCATRAZ/SPATULA-like protein [Prunus persica]
Length = 386
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 85/123 (69%), Gaps = 10/123 (8%)
Query: 305 ECQSEA---AGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPH 361
+C+SE A E AG RS S +RSRAAEVHN+SE+RRR RINEKM+ALQ LIP+
Sbjct: 129 DCESEEGLEALVEEAAGKPGCGRSSS-KRSRAAEVHNMSEKRRRSRINEKMKALQNLIPN 187
Query: 362 CNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPG----MQHYMSRMGMGMGP 415
NKTDKASMLDEAIEYLK LQLQ+Q++ M +GM+ P+ PG +Q RM +G
Sbjct: 188 SNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGMSLHPMCLPGALQPVQVSQMRMDLGEEN 247
Query: 416 PPL 418
PL
Sbjct: 248 RPL 250
>gi|42573075|ref|NP_974634.1| transcription factor bHLH23 [Arabidopsis thaliana]
gi|332660144|gb|AEE85544.1| transcription factor bHLH23 [Arabidopsis thaliana]
Length = 340
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 129/394 (32%), Positives = 173/394 (43%), Gaps = 100/394 (25%)
Query: 16 ISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNS 75
IS + MG+D+ +VELL ++ VV SSQ QT PS + P + LRGSGS
Sbjct: 15 ISPEKYIMGEDD-IVELLGKSSQVVTSSQTQT---PSCD---PPLI----LRGSGSGDGE 63
Query: 76 SN----------------LIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKH 119
N IQ+DE SW+H P + L+S+L SG
Sbjct: 64 GNGPLPQPPPPLYHQQSLFIQEDEMASWLHQPNRQDY-------LYSQLLYSG------- 109
Query: 120 TRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAA--PQNKNLGD 177
+S HP S+ P PPPR + AA P L +
Sbjct: 110 ------------------VASTHPQSLASLEPP------PPPRAQYILAADRPTGHILAE 145
Query: 178 LGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVREC-SMMTVGSSHCGSNQVAYD 236
+ NF R+R GN+ G V S T+ SS S +
Sbjct: 146 R-RAENFMN---------------ISRQR-GNIFLGGVEAVPSNSTLLSSATESIPATHG 188
Query: 237 LDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSL-- 294
+ SRA+ +G V RGK IE T S G + +Q + +
Sbjct: 189 TE-SRATVTGGVSRTFAVPGLGPRGKAVAIETAGTQSWGLCKAETEPVQRQPATETDITD 247
Query: 295 --KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKM 352
KRK+R+ + E Q G + A+ S S +RSRAA +H LSERRRR +INE M
Sbjct: 248 ERKRKTREETNVENQ----------GTEEARDSTSSKRSRAAIMHKLSERRRRQKINEMM 297
Query: 353 RALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
+ALQEL+P C KTD++SMLD+ IEY+KSLQ Q+Q
Sbjct: 298 KALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQ 331
>gi|449485549|ref|XP_004157205.1| PREDICTED: uncharacterized protein LOC101227644 [Cucumis sativus]
Length = 415
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 79/119 (66%), Gaps = 5/119 (4%)
Query: 300 DAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELI 359
D D E + K RS S +RSRAAEVHNLSE+RRR RINEKM+ALQ LI
Sbjct: 143 DEFDCESEEGLEALVEELPTKPNPRSSS-KRSRAAEVHNLSEKRRRSRINEKMKALQNLI 201
Query: 360 PHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPGMQHY--MSRMGMGMG 414
P+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G++ P+ PG Y +S M M G
Sbjct: 202 PNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFG 260
>gi|449448502|ref|XP_004142005.1| PREDICTED: uncharacterized protein LOC101217594 [Cucumis sativus]
Length = 406
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 79/119 (66%), Gaps = 5/119 (4%)
Query: 300 DAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELI 359
D D E + K RS S +RSRAAEVHNLSE+RRR RINEKM+ALQ LI
Sbjct: 143 DEFDCESEEGLEALVEELPTKPNPRSSS-KRSRAAEVHNLSEKRRRSRINEKMKALQNLI 201
Query: 360 PHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPGMQHY--MSRMGMGMG 414
P+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G++ P+ PG Y +S M M G
Sbjct: 202 PNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFG 260
>gi|145712878|gb|ABP96468.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712880|gb|ABP96469.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712882|gb|ABP96470.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712886|gb|ABP96472.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712892|gb|ABP96475.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712898|gb|ABP96478.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
Length = 251
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 106/180 (58%), Gaps = 23/180 (12%)
Query: 207 SGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPS-----ERG 261
S + + E+ + S+ TVG SHCGSN DLD+S + N + + ++P+
Sbjct: 90 SSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMSHDRSKN--IEEKLNPNASSSSGGS 147
Query: 262 KTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKT 321
+ + + G + +R KRK + D E+ GNK+
Sbjct: 148 SGCSFGKDIKEMASGRCITTDR-----------KRKRINDTD-----ESVSLSDAIGNKS 191
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
QRSGS RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDKAS+LDEAI+YLKSL
Sbjct: 192 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSL 251
>gi|145712876|gb|ABP96467.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712884|gb|ABP96471.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712888|gb|ABP96473.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712890|gb|ABP96474.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712894|gb|ABP96476.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712896|gb|ABP96477.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712900|gb|ABP96479.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|145712902|gb|ABP96480.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
Length = 251
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 106/180 (58%), Gaps = 23/180 (12%)
Query: 207 SGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPS-----ERG 261
S + + E+ + S+ TVG SHCGSN DLD+S + N + + ++P+
Sbjct: 90 SSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMSHDRSKN--IEEKLNPNASSSSGGS 147
Query: 262 KTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKT 321
+ + + G + +R KRK + D E+ GNK+
Sbjct: 148 SGCSFGKDIKEMASGRCITTDR-----------KRKRINHTD-----ESVSLSDAIGNKS 191
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
QRSGS RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDKAS+LDEAI+YLKSL
Sbjct: 192 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSL 251
>gi|297803176|ref|XP_002869472.1| hypothetical protein ARALYDRAFT_913634 [Arabidopsis lyrata subsp.
lyrata]
gi|297315308|gb|EFH45731.1| hypothetical protein ARALYDRAFT_913634 [Arabidopsis lyrata subsp.
lyrata]
Length = 1780
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 123/443 (27%), Positives = 178/443 (40%), Gaps = 130/443 (29%)
Query: 19 QMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSNL 78
++K G+D+ +VEL W+ G VV SSQ + + ++P + LRG GS G N+
Sbjct: 1316 RLKNRGEDD-IVELFWKIGQVVRSSQTE------IPSSDPTPI----LRGRGSRGGEENV 1364
Query: 79 ---------------IQDDETVSWIHCPIEDSFEKDFY-SQLFSELPPSGPMEVDKHTRQ 122
IQ+D+ SWIH +D+ SQL++ P P
Sbjct: 1365 PLPPPLPPPHHQNLFIQEDDMSSWIH---HHPLLQDYLCSQLYASTPAPHP--------- 1412
Query: 123 LREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLV 182
+ V PP S P + P + N M
Sbjct: 1413 ---QSSVPLAPP----QSSAPYGQIIIAPRREENVM------------------------ 1441
Query: 183 NFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGS-NQVAYDLDMSR 241
F R R LT G V + VGSS S + +L +
Sbjct: 1442 ------------------NFLRLRGNILTGGSVEAGPWIPVGSSATTSLSATESNLTPAT 1483
Query: 242 ASSSGLNDDVRKVIS-PSERGKTETIEPTVTSSSGGSGSSFNRT-------SKQSTGDNS 293
S + V S PS GK + + G+ SS T + ++ +
Sbjct: 1484 ESLPTVTGGVFHTFSVPSRGGKEKAVAIQTVCEIAGTSSSGVETEPVRIQPATETDIADG 1543
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
+RK R+ + Q G + A+ S S +RSRAAE+HNL+ERRRR++INEKM+
Sbjct: 1544 RERKEREETIAGIQ----------GTEEARGSTSRKRSRAAEMHNLAERRRREKINEKMK 1593
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ----------------------VMWMG 391
LQELIP CNK+ K S L++ IEY+KSL++Q+Q +M G
Sbjct: 1594 TLQELIPRCNKSTKVSTLEDVIEYVKSLEMQIQHYVMNFRIMTEVLISESMLLCKMMSTG 1653
Query: 392 SGMAPLMFPG-MQHYMSRMGMGM 413
P+M+ Q +M M MGM
Sbjct: 1654 CSTMPMMYTSNTQQFMPHMAMGM 1676
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 104/188 (55%), Gaps = 18/188 (9%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
G + A+ S S +RSRAAE+HNL+ERRRR++INEKM+ LQELIP CNK+ K S LD AIEY
Sbjct: 124 GTEEARGSTSRKRSRAAEMHNLAERRRREKINEKMKTLQELIPRCNKSTKVSTLDAAIEY 183
Query: 378 LKSLQLQLQVMWMGSGMAPLMF--PGMQHYMSRMGMGM----GPPPLPSVTNPM-HFSRV 430
+K LQ Q+Q++ MG GM P M MQ +M M M M PP +PS P +++
Sbjct: 184 VKWLQSQIQMILMGQGMMPSMMNEENMQEFMPHMAMKMMGMNRPPFIPSPGTPFPSPAQI 243
Query: 431 PLVDQSMSMAQAQ----NRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFH------- 479
V S + A+ N + V P NQ + Y+ ++G H
Sbjct: 244 AGVGPSQAYPAARYPFPNIQTFDPSRVRLPSPVVNQTHFPAYMNPYSHFVGHHQMLQPPP 303
Query: 480 PMQANSQP 487
P+Q+ + P
Sbjct: 304 PLQSQTTP 311
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 103/184 (55%), Gaps = 16/184 (8%)
Query: 240 SRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSL----K 295
SRA+ G V RGK I+ TSSSG + Q + + K
Sbjct: 1056 SRATVIGGVSRTFAVPGFGRRGKAVAIDTAGTSSSGVCKAETEPVRIQPETETEIAEDRK 1115
Query: 296 RKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRAL 355
+K R+ E Q G + A+ S S +RSRAAE+HNL+ERRRR++INEKM+ L
Sbjct: 1116 QKEREETIVEIQ----------GTEEARGSTSRKRSRAAEMHNLAERRRREKINEKMKTL 1165
Query: 356 QELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMF--PGMQHYMSRMGMGM 413
QELIP CNK+ K S L++ IEY+KSLQ+Q+Q+M MG GM P M MQ +M M MGM
Sbjct: 1166 QELIPRCNKSTKVSTLEDVIEYMKSLQMQIQMMSMGHGMMPPMMNAENMQQFMPHMAMGM 1225
Query: 414 GPPP 417
PP
Sbjct: 1226 NRPP 1229
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 178/408 (43%), Gaps = 95/408 (23%)
Query: 26 DNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSN-------- 77
++++VELLW++G VV SSQ Q +PS + P ++ G N+
Sbjct: 343 EDDIVELLWKSGRVVQSSQTQ---RPS--SDPPPILRGSGSGGGEEEENAPLPPPPPLPP 397
Query: 78 ------LIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKF 131
IQ+DE SW+H S+ +D+ L SEL SG V
Sbjct: 398 LHHQNLFIQEDEMYSWLH----QSYRQDY---LCSELRYSG----------------VAS 434
Query: 132 DPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPP 191
+P + HP S+ P P F +D Q + +NFS
Sbjct: 435 NP------ATHP--QSSISPA-------PCPFAPYDQRGQTIATRRVENFMNFSWL---- 475
Query: 192 KGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDV 251
+G + G + G VRE + ++ S + + + + S ++ +
Sbjct: 476 RGNIF---------TGGRVEAGVVRESIQLGSSTTPSSSATESCVIPATEGTESRVSQTL 526
Query: 252 RKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAA 311
V ++GK IE T SSG K T ++ A E Q
Sbjct: 527 -AVPGLGQKGKAVVIETAETPSSG--------VCKAETEPVQIQ----PATIVEIQ---- 569
Query: 312 GFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
G E G+ + +R SR AE+HNL+ERRRR++INE ++ LQELIP CNK+ K S L
Sbjct: 570 GTEEARGSMSRKR------SRTAEMHNLAERRRREKINENIKTLQELIPRCNKSTKVSTL 623
Query: 372 DEAIEYLKSLQLQLQVMWMGSG-MAPLMFPG-MQHYMSRMGMGMGPPP 417
D+AIEY+K LQ Q+Q+M G G M P+M+ G Q +M M M M PP
Sbjct: 624 DDAIEYVKWLQSQIQMMSTGQGMMPPMMYAGNTQQFMPHMAMDMNRPP 671
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 25/83 (30%)
Query: 26 DNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSN-------- 77
++++VELLW++G +V ++ QTQR S + P V LRGSGS G N
Sbjct: 757 EDDIVELLWKSGQLVRTT--QTQRPSSDKPSSPPPV----LRGSGSGGGDENAPLPLPLP 810
Query: 78 -----------LIQDDETVSWIH 89
IQ+DE SW+H
Sbjct: 811 QPPPPLHHQNLFIQEDELSSWLH 833
>gi|145712853|gb|ABP96466.1| phytochrome interacting factor 4 [Arabidopsis lyrata subsp.
petraea]
Length = 250
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 104/178 (58%), Gaps = 19/178 (10%)
Query: 207 SGNLTQGEVRECSMMTVGSSHCGSN--QVAYDLDMSRASSSGLNDDVR-KVISPSERGKT 263
S + + E+ + S+ T+G SHCGSN Q +D MS+ S + + + S S
Sbjct: 89 SSGMRETEMEQYSVTTIGPSHCGSNPSQNDFDASMSQDRSKNIEEKLNPNASSSSGGSSG 148
Query: 264 ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQ 323
+ + + G + +R K D +S S+A G GNK+ Q
Sbjct: 149 CSFGKDIKEMACGRSITTDRKRKHIM----------DTDESVSLSDAIG-----GNKSNQ 193
Query: 324 RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
RSGS RRSRAAEVHNLSERRR DRINE+M+ALQELIPHC+KTDKAS+LD AI+Y+KSL
Sbjct: 194 RSGSNRRSRAAEVHNLSERRR-DRINERMKALQELIPHCSKTDKASILDGAIDYMKSL 250
>gi|255565242|ref|XP_002523613.1| conserved hypothetical protein [Ricinus communis]
gi|223537175|gb|EEF38808.1| conserved hypothetical protein [Ricinus communis]
Length = 406
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 84/139 (60%), Gaps = 21/139 (15%)
Query: 298 SRDAVDSECQSEAA-GFES---GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
S + D EC E+ G E+ K A S +RSRAAEVHNLSE+RRR RINEKM+
Sbjct: 123 SENETDHECDCESEEGLEALIEEVQTKAAPPRSSSKRSRAAEVHNLSEKRRRSRINEKMK 182
Query: 354 ALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGM 413
ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ + R G+G+
Sbjct: 183 ALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSL-----------------RNGIGL 225
Query: 414 GPPPLPSVTNPMHFSRVPL 432
P LP V P FS+ +
Sbjct: 226 HPMCLPGVLQPTQFSQFSM 244
>gi|302801726|ref|XP_002982619.1| hypothetical protein SELMODRAFT_116654 [Selaginella moellendorffii]
gi|300149718|gb|EFJ16372.1| hypothetical protein SELMODRAFT_116654 [Selaginella moellendorffii]
Length = 85
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 62/71 (87%)
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S +RSRAAEVHNLSERRRRDRINEKM+ALQELIP+ NKTDKASMLDEAIEYLK LQLQLQ
Sbjct: 15 SSKRSRAAEVHNLSERRRRDRINEKMKALQELIPNSNKTDKASMLDEAIEYLKMLQLQLQ 74
Query: 387 VMWMGSGMAPL 397
V+ GS L
Sbjct: 75 VLSPGSSKVSL 85
>gi|224130812|ref|XP_002320931.1| predicted protein [Populus trichocarpa]
gi|222861704|gb|EEE99246.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 104/172 (60%), Gaps = 21/172 (12%)
Query: 252 RKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAA 311
+K+ +RGK+ + T TSS G+S + TS SL+R+ D + S+
Sbjct: 306 KKIKGKPDRGKS-IDQLTATSSICSRGASNDPTS-------SLERQYEDTEGTAYSSDDL 357
Query: 312 GFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
E A+ S +R RA E+HNLSER+RRDRIN+KMRALQ+LIP+ NK DKASML
Sbjct: 358 EEEEQV---PARGSAGSKRRRATEIHNLSERKRRDRINKKMRALQDLIPNSNKVDKASML 414
Query: 372 DEAIEYLKSLQLQLQVMWMGSGMA-PLMF--PGMQHY-------MSRMGMGM 413
EAI+YLKSLQLQ+Q+M MG+ + PLM GMQH S MG+GM
Sbjct: 415 GEAIDYLKSLQLQVQMMSMGTRLCMPLMMLPTGMQHIHAPLLAQFSPMGVGM 466
>gi|118486519|gb|ABK95099.1| unknown [Populus trichocarpa]
Length = 561
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 104/172 (60%), Gaps = 21/172 (12%)
Query: 252 RKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAA 311
+K+ +RGK+ + T TSS G+S + TS SL+R+ D + S+
Sbjct: 312 KKIKGKPDRGKS-IDQLTATSSICSRGASNDPTS-------SLERQYEDTEGTAYSSDDL 363
Query: 312 GFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
E A+ S +R RA E+HNLSER+RRDRIN+KMRALQ+LIP+ NK DKASML
Sbjct: 364 EEEEQV---PARGSAGSKRRRATEIHNLSERKRRDRINKKMRALQDLIPNSNKVDKASML 420
Query: 372 DEAIEYLKSLQLQLQVMWMGSGMA-PLMF--PGMQHY-------MSRMGMGM 413
EAI+YLKSLQLQ+Q+M MG+ + PLM GMQH S MG+GM
Sbjct: 421 GEAIDYLKSLQLQVQMMSMGTRLCMPLMMLPTGMQHIHAPLLAQFSPMGVGM 472
>gi|302798757|ref|XP_002981138.1| hypothetical protein SELMODRAFT_114141 [Selaginella moellendorffii]
gi|300151192|gb|EFJ17839.1| hypothetical protein SELMODRAFT_114141 [Selaginella moellendorffii]
Length = 85
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/67 (85%), Positives = 61/67 (91%)
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S +RSRAAEVHNLSERRRRDRINEKM+ALQELIP+ NKTDKASMLDEAIEYLK LQLQLQ
Sbjct: 15 SSKRSRAAEVHNLSERRRRDRINEKMKALQELIPNSNKTDKASMLDEAIEYLKMLQLQLQ 74
Query: 387 VMWMGSG 393
V+ GS
Sbjct: 75 VLSPGSS 81
>gi|449439645|ref|XP_004137596.1| PREDICTED: transcription factor UNE10-like [Cucumis sativus]
gi|449487081|ref|XP_004157490.1| PREDICTED: transcription factor UNE10-like [Cucumis sativus]
Length = 458
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 78/115 (67%), Gaps = 2/115 (1%)
Query: 293 SLKRKSRDAVDSECQSEAAGFESGAGNK-TAQRSGSCRRSRAAEVHNLSERRRRDRINEK 351
SLK KS D DS C E+ E K A RS S RRSRAA +HN SERRRRDRINEK
Sbjct: 222 SLKTKSIDE-DSACHVESENQEEEQDTKRVANRSHSARRSRAAAIHNQSERRRRDRINEK 280
Query: 352 MRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYM 406
M+ALQ+L+P+ +KTDKASMLDE IEYLK LQ Q+Q M + S +M GMQ +
Sbjct: 281 MKALQKLVPNASKTDKASMLDEVIEYLKQLQAQVQFMSVRSMQQMIMPIGMQQQL 335
>gi|116785394|gb|ABK23705.1| unknown [Picea sitchensis]
Length = 333
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
Query: 303 DSECQSEAAGFESGAGNKTAQR-SGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPH 361
D ECQS+ A +SG K + S +RSRAAEVHNLSE+RRR+RINEKM+ALQ LIP+
Sbjct: 126 DIECQSQKAQEDSGENFKQCSTGTSSSKRSRAAEVHNLSEKRRRNRINEKMKALQNLIPN 185
Query: 362 CNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
NKTDKASMLDEAIEYLK LQLQ+Q++ SG+
Sbjct: 186 SNKTDKASMLDEAIEYLKKLQLQVQMLSARSGI 218
>gi|449531452|ref|XP_004172700.1| PREDICTED: uncharacterized protein LOC101229339 [Cucumis sativus]
Length = 379
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 83/126 (65%), Gaps = 7/126 (5%)
Query: 294 LKRK----SRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRIN 349
LKR+ D D C SE + R+ S +RSR+AEVHN+SE+RRR RIN
Sbjct: 155 LKRRGLSSENDLGDFSCDSEGGDLPEVPSSTNLPRNSS-KRSRSAEVHNMSEKRRRRRIN 213
Query: 350 EKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPGMQHYMS 407
EKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G++ P+ PGM +
Sbjct: 214 EKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLQPMCLPGMLQPIQ 273
Query: 408 RMGMGM 413
MG+
Sbjct: 274 LPQMGL 279
>gi|449475553|ref|XP_004154488.1| PREDICTED: transcription factor bHLH82-like [Cucumis sativus]
Length = 173
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 67/88 (76%), Gaps = 8/88 (9%)
Query: 313 FESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-------- 364
+ES K + S S +RSRAAEVHNLSERRRRDRINEKM+ALQELIP CNK
Sbjct: 39 YESADPKKQLRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKLSSFTDSQ 98
Query: 365 TDKASMLDEAIEYLKSLQLQLQVMWMGS 392
TDKASMLDEAIEYLK+LQLQ+Q+ + S
Sbjct: 99 TDKASMLDEAIEYLKTLQLQVQIFVLNS 126
>gi|222080623|gb|ACM41588.1| bHLH transcription factor MYC5 [Catharanthus roseus]
Length = 321
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 81/116 (69%), Gaps = 6/116 (5%)
Query: 303 DSECQSEAA--GFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIP 360
+ +C+SE G A K +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP
Sbjct: 115 EYDCESEEGLEGLILEAPAKPTTSRNPSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIP 174
Query: 361 HCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPGMQ--HYMSRMGMG 412
+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G++ P+ PG+ + +S M MG
Sbjct: 175 NSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGVSLYPVCLPGVLQPNEISHMRMG 230
>gi|42569994|ref|NP_182220.2| transcription factor PIL1 [Arabidopsis thaliana]
gi|75301051|sp|Q8L5W8.1|PIL1_ARATH RecName: Full=Transcription factor PIL1; AltName: Full=Basic
helix-loop-helix protein 124; Short=AtbHLH124;
Short=bHLH 124; AltName: Full=Protein PHYTOCHROME
INTERACTING FACTOR 3-LIKE 1; AltName: Full=Transcription
factor EN 110; AltName: Full=bHLH transcription factor
bHLH124
gi|22535492|dbj|BAC10689.1| PIF3 like basic Helix Loop Helix protein [Arabidopsis thaliana]
gi|61742691|gb|AAX55166.1| hypothetical protein At2g46970 [Arabidopsis thaliana]
gi|330255685|gb|AEC10779.1| transcription factor PIL1 [Arabidopsis thaliana]
Length = 416
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 90/145 (62%), Gaps = 9/145 (6%)
Query: 276 GSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQ-----RSGSCRR 330
S S F+R + + SLKRK D + E + + + + Q R +R
Sbjct: 168 ASSSKFSRGTSRDLSCCSLKRKYGDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKR 227
Query: 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
R+ EVH L ER+RRD N+KMRALQ+L+P+C K DKAS+LDEAI+Y+++LQLQ+Q+M M
Sbjct: 228 KRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQMMSM 287
Query: 391 GSGMA--PLMFPGMQHYMSRMGMGM 413
G+G+ P M P M HY S MG+GM
Sbjct: 288 GNGLIRPPTMLP-MGHY-SPMGLGM 310
>gi|440577342|emb|CCI55348.1| PH01B019A14.17 [Phyllostachys edulis]
Length = 184
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 62/73 (84%)
Query: 334 AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG 393
E HN SERRRRDRINEK++ALQEL+P+C KTDK SMLDEAI+YLKSLQ+QLQ++ MG G
Sbjct: 19 VEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQIQLQMLVMGKG 78
Query: 394 MAPLMFPGMQHYM 406
AP++ P +Q YM
Sbjct: 79 TAPVVPPELQQYM 91
>gi|55296133|dbj|BAD67851.1| basic helix-loop-helix protein SPATULA-like [Oryza sativa Japonica
Group]
gi|125596157|gb|EAZ35937.1| hypothetical protein OsJ_20240 [Oryza sativa Japonica Group]
Length = 315
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 73/92 (79%), Gaps = 4/92 (4%)
Query: 306 CQSEAAGF---ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
C SEA G E+ AG + SGS +RSRAAEVHNLSE+RRR +INEKM+ALQ LIP+
Sbjct: 75 CDSEAGGSSEPEAAAGARPRGGSGS-KRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNS 133
Query: 363 NKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
NKTDKASMLDEAIEYLK LQLQ+Q++ M +G+
Sbjct: 134 NKTDKASMLDEAIEYLKQLQLQVQMLSMRNGV 165
>gi|125554209|gb|EAY99814.1| hypothetical protein OsI_21804 [Oryza sativa Indica Group]
Length = 315
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 73/92 (79%), Gaps = 4/92 (4%)
Query: 306 CQSEAAGF---ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
C SEA G E+ AG + SGS +RSRAAEVHNLSE+RRR +INEKM+ALQ LIP+
Sbjct: 75 CDSEAGGSSEPEAAAGARPRGGSGS-KRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNS 133
Query: 363 NKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
NKTDKASMLDEAIEYLK LQLQ+Q++ M +G+
Sbjct: 134 NKTDKASMLDEAIEYLKQLQLQVQMLSMRNGV 165
>gi|297744077|emb|CBI37047.3| unnamed protein product [Vitis vinifera]
Length = 200
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 68/80 (85%), Gaps = 2/80 (2%)
Query: 325 SGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQ 384
S +R+R+AE H+LSE+RRRDRIN+KMR+LQELIP+C K DK S+LDEAI+YLK+LQLQ
Sbjct: 7 SAGSKRNRSAEGHSLSEKRRRDRINKKMRSLQELIPNCKKVDKISILDEAIDYLKTLQLQ 66
Query: 385 LQVMWMGSG--MAPLMFPGM 402
+QVM MG+G MAP+M P +
Sbjct: 67 VQVMSMGAGMCMAPVMIPAV 86
>gi|90399331|emb|CAJ86131.1| H0313F03.15 [Oryza sativa Indica Group]
Length = 307
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Query: 269 TVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTA-QRSGS 327
T+T+S S SK S G + L A+ S Q G G G + A Q
Sbjct: 83 TLTNSFFASQVRAITYSKASLGLDQLA-----AIGSLYQFIRGG---GEGKEAASQEEEQ 134
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+ R+ H +S +RRRDRINEK++ALQEL+P+C KTDK SMLDEAI+YLKSLQLQLQ+
Sbjct: 135 TPKLRSVIAHLVSRKRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQM 194
Query: 388 MWMGSGMAPLMFPGMQHYMSRMGM--GMGPPPLPSVTNPMHFS 428
+ MG GMAP++ P +Q YM + PP PS P +
Sbjct: 195 LVMGKGMAPVVPPELQQYMHYITADPSQIPPIRPSEPRPFQIT 237
>gi|449450231|ref|XP_004142867.1| PREDICTED: uncharacterized protein LOC101203008 [Cucumis sativus]
Length = 842
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 83/126 (65%), Gaps = 7/126 (5%)
Query: 294 LKRK----SRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRIN 349
LKR+ D D C SE + R+ S +RSR+AEVHN+SE+RRR RIN
Sbjct: 155 LKRRGLSSENDLGDFSCDSEGGDLPEVPSSTNLPRN-SSKRSRSAEVHNMSEKRRRRRIN 213
Query: 350 EKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPGMQHYMS 407
EKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G++ P+ PGM +
Sbjct: 214 EKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLQPMCLPGMLQPIQ 273
Query: 408 RMGMGM 413
MG+
Sbjct: 274 LPQMGL 279
>gi|356571031|ref|XP_003553685.1| PREDICTED: uncharacterized protein LOC100784724 [Glycine max]
Length = 518
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 81/128 (63%), Gaps = 17/128 (13%)
Query: 296 RKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRAL 355
RK D DS S+ G E K + +RSR EVHNLSE++RR++IN+KMR L
Sbjct: 301 RKHEDTDDSTYLSDNDG-EPEDMVKQDREGNRVKRSRNPEVHNLSEKKRREKINKKMRTL 359
Query: 356 QELIPHCNKTDKASMLDEAIEYLKSLQLQL----QVMWMGSGMAPLMFPGMQHYMSRMGM 411
++LIP+CNK DKASMLD+AI+YLK+L+LQL Q+M MGSG+ PLM M
Sbjct: 360 KDLIPNCNKVDKASMLDDAIDYLKTLKLQLQANFQIMSMGSGLWPLM------------M 407
Query: 412 GMGPPPLP 419
G PP LP
Sbjct: 408 GFRPPQLP 415
>gi|374412422|gb|AEZ49169.1| helix-loop-helix DNA-binding domain containing protein [Wolffia
australiana]
Length = 368
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRA 354
+R+ D VD + + G + + R + +RSR++EVHNLSERRRRDRINEKMRA
Sbjct: 183 RREEDDGVDYQTEENGEGESTNRRHAGKGRLMNKKRSRSSEVHNLSERRRRDRINEKMRA 242
Query: 355 LQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMF 399
LQEL+P CNK DKASML+E IEYLKSLQ+Q+Q M MG M P+M
Sbjct: 243 LQELVPCCNKQVDKASMLEEVIEYLKSLQMQVQAMSMGY-MRPMML 287
>gi|168027682|ref|XP_001766358.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682267|gb|EDQ68686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 81
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/64 (85%), Positives = 58/64 (90%)
Query: 324 RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R + +RSRAAEVHN SERRRRDRINEKMRALQELIP+ NKTDKASMLDEAIEYLK LQL
Sbjct: 15 RGSTAKRSRAAEVHNQSERRRRDRINEKMRALQELIPNSNKTDKASMLDEAIEYLKMLQL 74
Query: 384 QLQV 387
QLQV
Sbjct: 75 QLQV 78
>gi|302804013|ref|XP_002983759.1| hypothetical protein SELMODRAFT_118904 [Selaginella moellendorffii]
gi|300148596|gb|EFJ15255.1| hypothetical protein SELMODRAFT_118904 [Selaginella moellendorffii]
Length = 89
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/59 (93%), Positives = 57/59 (96%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+RSRAAEVHNLSERRRRDRINEKMRALQELIP+ NKTDKASMLDEAIEYLK LQLQLQV
Sbjct: 14 KRSRAAEVHNLSERRRRDRINEKMRALQELIPNSNKTDKASMLDEAIEYLKMLQLQLQV 72
>gi|297605234|ref|NP_001056902.2| Os06g0164400 [Oryza sativa Japonica Group]
gi|255676746|dbj|BAF18816.2| Os06g0164400, partial [Oryza sativa Japonica Group]
Length = 188
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
E+ AG + SGS +RSRAAEVHNLSE+RRR +INEKM+ALQ LIP+ NKTDKASMLDE
Sbjct: 9 EAAAGARPRGGSGS-KRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDE 67
Query: 374 AIEYLKSLQLQLQVMWMGSGM 394
AIEYLK LQLQ+Q++ M +G+
Sbjct: 68 AIEYLKQLQLQVQMLSMRNGV 88
>gi|168039475|ref|XP_001772223.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676554|gb|EDQ63036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 78
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 58/64 (90%)
Query: 324 RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R + +RSRAAEVHN SERRRRDRINEKMRALQELIP+ NKTDKASML+EAIEYLK LQL
Sbjct: 15 RGSTAKRSRAAEVHNQSERRRRDRINEKMRALQELIPNSNKTDKASMLEEAIEYLKMLQL 74
Query: 384 QLQV 387
QLQV
Sbjct: 75 QLQV 78
>gi|307135852|gb|ADN33721.1| serine/threonine-protein kinase [Cucumis melo subsp. melo]
Length = 842
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 83/126 (65%), Gaps = 7/126 (5%)
Query: 294 LKRK----SRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRIN 349
LKR+ D D C SE + R+ S +RSR+AEVHN+SE+RRR RIN
Sbjct: 155 LKRRGLSSENDLGDFSCDSEGGDLPEVPSSTDLPRNSS-KRSRSAEVHNMSEKRRRRRIN 213
Query: 350 EKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPGMQHYMS 407
EKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G++ P+ PG+ +
Sbjct: 214 EKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLQPMCLPGVLQPIQ 273
Query: 408 RMGMGM 413
MG+
Sbjct: 274 LPQMGL 279
>gi|28207148|gb|AAO37214.1| hypothetical protein [Arabidopsis thaliana]
Length = 416
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Query: 276 GSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQ-----RSGSCRR 330
S S F+R + + SLKRK D + E + + + + Q R +R
Sbjct: 168 ASSSKFSRGTSRDLSCCSLKRKYGDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKR 227
Query: 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
R+ EVH L ER+RRD N+KMRALQ+L+P+C K DKAS+LDEAI+Y+++LQLQ+Q+M M
Sbjct: 228 KRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQMMSM 287
Query: 391 GSGMA--PLMFPGMQHYMSRMGMGMGPPPLPS 420
G+G+ P M P ++ +GM MG P+
Sbjct: 288 GNGLIRPPTMLPMGKYSPMGLGMHMGAAATPT 319
>gi|240256101|ref|NP_194609.5| basic helix-loop-helix domain-containing protein [Arabidopsis
thaliana]
gi|378405153|sp|Q9SVU7.2|BH056_ARATH RecName: Full=Putative transcription factor bHLH056; AltName:
Full=Basic helix-loop-helix protein 56; Short=AtbHLH56;
Short=bHLH 56; AltName: Full=Transcription factor EN
106; AltName: Full=bHLH transcription factor bHLH056
gi|332660146|gb|AEE85546.1| basic helix-loop-helix domain-containing protein [Arabidopsis
thaliana]
Length = 445
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 93/171 (54%), Gaps = 26/171 (15%)
Query: 260 RGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGN 319
+GK +E T SSG + Q ++ LK + E G
Sbjct: 199 KGKAVAVEAAGTPSSGVCKAETEPVQIQPATESKLKAR----------------EETHGT 242
Query: 320 KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLK 379
+ A+ S S +RSR AE+HNL+ERRRR++INEKM+ LQ+LIP CNK+ K S LD+AIEY+K
Sbjct: 243 EEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYVK 302
Query: 380 SLQLQLQVMWMGSGMAPLMFPG-MQHYMSRMGMGMGPP----PLPSVTNPM 425
SLQ Q+Q M M+P+M G Q +M M M M P P P + PM
Sbjct: 303 SLQSQIQGM-----MSPMMNAGNTQQFMPHMAMDMNRPPPFIPFPGTSFPM 348
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 30/105 (28%)
Query: 25 QDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSN------- 77
+++++VELLWQ+G VV ++Q Q +++ P LRGSGS N
Sbjct: 18 REDDIVELLWQSGQVVGTNQTHRQ-----SYDPP-----PILRGSGSGRGEENAPLSQPP 67
Query: 78 --------LIQDDETVSWIHCPIEDSFEKDFY-SQLFSELPPSGP 113
IQ+ E SW+H S+ ++++ S+L + P + P
Sbjct: 68 PHLHQQNLFIQEGEMYSWLH----HSYRQNYFCSELLNSTPATHP 108
>gi|255547289|ref|XP_002514702.1| DNA binding protein, putative [Ricinus communis]
gi|223546306|gb|EEF47808.1| DNA binding protein, putative [Ricinus communis]
Length = 440
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 293 SLKRKSRDAVDSECQSEAAGFESGAGNKTAQ-RSGSCRRSRAAEVHNLSERRRRDRINEK 351
SLK K+ D DS + + KT RS S RR+RAA VHN SERRRRDRIN+K
Sbjct: 208 SLKAKTTDE-DSASHGGSENQDEDRETKTETVRSHSSRRTRAAAVHNQSERRRRDRINQK 266
Query: 352 MRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFP-GMQH-----Y 405
M+ALQ+L+P+ +KTDKASMLDE IEYLK LQ Q+Q M + M +M P GMQ
Sbjct: 267 MKALQKLVPNASKTDKASMLDEVIEYLKQLQAQVQAMSV-RNMPQMMMPLGMQQQLQMSL 325
Query: 406 MSRMGMGM 413
++RMGMG+
Sbjct: 326 LARMGMGV 333
>gi|15451582|gb|AAK98706.1|AC069158_18 Putative SPATULA [Oryza sativa Japonica Group]
Length = 298
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 89/154 (57%), Gaps = 25/154 (16%)
Query: 306 CQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT 365
C+SE A S + T +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ +KT
Sbjct: 6 CESEEALGSSESEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKT 65
Query: 366 DKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPM 425
DKASMLD+AIEYLK LQLQ+Q++ M +G+ Y+ + + P LP
Sbjct: 66 DKASMLDDAIEYLKQLQLQVQMLSMRNGL----------YLPPVNLSGAPEHLP------ 109
Query: 426 HFSRVPLVDQSMSMAQAQNRAVMCQAS-VLNPVN 458
+P MS A QN A S VL PVN
Sbjct: 110 ----IP----QMSAALDQNSAKASDPSVVLQPVN 135
>gi|224124904|ref|XP_002319451.1| predicted protein [Populus trichocarpa]
gi|222857827|gb|EEE95374.1| predicted protein [Populus trichocarpa]
Length = 59
Score = 108 bits (271), Expect = 5e-21, Method: Composition-based stats.
Identities = 53/59 (89%), Positives = 57/59 (96%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+R RAAEVHNLSERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+LQLQ+QV
Sbjct: 1 KRGRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQV 59
>gi|125584067|gb|EAZ24998.1| hypothetical protein OsJ_08778 [Oryza sativa Japonica Group]
Length = 320
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 89/154 (57%), Gaps = 25/154 (16%)
Query: 306 CQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT 365
C+SE A S + T +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ +KT
Sbjct: 28 CESEEALGSSESEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKT 87
Query: 366 DKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPM 425
DKASMLD+AIEYLK LQLQ+Q++ M +G+ Y+ + + P LP
Sbjct: 88 DKASMLDDAIEYLKQLQLQVQMLSMRNGL----------YLPPVNLSGAPEHLP------ 131
Query: 426 HFSRVPLVDQSMSMAQAQNRAVMCQAS-VLNPVN 458
+P MS A QN A S VL PVN
Sbjct: 132 ----IP----QMSAALDQNSAKASDPSVVLQPVN 157
>gi|125541527|gb|EAY87922.1| hypothetical protein OsI_09345 [Oryza sativa Indica Group]
Length = 320
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 89/154 (57%), Gaps = 25/154 (16%)
Query: 306 CQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT 365
C+SE A S + T +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ +KT
Sbjct: 28 CESEEALGSSESEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKT 87
Query: 366 DKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPM 425
DKASMLD+AIEYLK LQLQ+Q++ M +G+ Y+ + + P LP
Sbjct: 88 DKASMLDDAIEYLKQLQLQVQMLSMRNGL----------YVPPVNLSGAPEHLP------ 131
Query: 426 HFSRVPLVDQSMSMAQAQNRAVMCQAS-VLNPVN 458
+P MS A QN A S VL PVN
Sbjct: 132 ----IP----QMSAALDQNSAKASDPSVVLQPVN 157
>gi|54306640|gb|AAV33474.1| basic helix-loop-helix protein [Fragaria x ananassa]
Length = 298
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 67/84 (79%), Gaps = 3/84 (3%)
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGS 392
AAEVHNLSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +
Sbjct: 145 AAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRN 204
Query: 393 GMA--PLMFPGMQHYMSRMGMGMG 414
GM+ P+ PG + S++ M G
Sbjct: 205 GMSLHPMCLPGASQF-SQIRMDFG 227
>gi|357118625|ref|XP_003561052.1| PREDICTED: uncharacterized protein LOC100821164 [Brachypodium
distachyon]
Length = 331
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 72/100 (72%), Gaps = 10/100 (10%)
Query: 305 ECQSEAAGF-ESGAGNKTAQ--------RSGS-CRRSRAAEVHNLSERRRRDRINEKMRA 354
+C GF ES AG + R GS +R+RAAEVHNLSE+RRR RINEKM+A
Sbjct: 69 DCGELGGGFYESEAGGSSEPEPHSSERPRGGSGSKRTRAAEVHNLSEKRRRSRINEKMKA 128
Query: 355 LQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
LQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G+
Sbjct: 129 LQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGV 168
>gi|356495472|ref|XP_003516601.1| PREDICTED: transcription factor SPATULA-like [Glycine max]
Length = 375
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 77/107 (71%), Gaps = 9/107 (8%)
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
EVHNLSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G+
Sbjct: 147 EVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGL 206
Query: 395 A--PLMFP-GMQHY-MSRMGMGM-----GPPPLPSVTNPMHFSRVPL 432
+ P+ FP G+Q +S+MGM + P S T P+H PL
Sbjct: 207 SLHPMCFPDGLQPLQLSQMGMELSERNRSTPLKMSATLPLHQDNNPL 253
>gi|225458663|ref|XP_002284880.1| PREDICTED: transcription factor SPATULA [Vitis vinifera]
gi|302142294|emb|CBI19497.3| unnamed protein product [Vitis vinifera]
Length = 369
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 8/133 (6%)
Query: 277 SGSSFNRTSKQSTGDNSLKRKSR-----DAVDS-ECQSEAAGFESGAGNKTAQRSGSCRR 330
+G++F+ + + ++ RK R ++VD C SE S + A S +R
Sbjct: 126 AGNTFSSIAAVDSEAITVSRKRRMFSMENSVDDFGCDSEKGPEASDVPSNPAPSRSSSKR 185
Query: 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
SRAAEVHNLSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M
Sbjct: 186 SRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTM 245
Query: 391 GSGMA--PLMFPG 401
+G++ P+ PG
Sbjct: 246 RNGLSLHPIYLPG 258
>gi|18419937|ref|NP_568010.1| transcription factor SPATULA [Arabidopsis thaliana]
gi|75309699|sp|Q9FUA4.1|SPT_ARATH RecName: Full=Transcription factor SPATULA; AltName: Full=Basic
helix-loop-helix protein 24; Short=AtbHLH24; Short=bHLH
24; AltName: Full=Transcription factor EN 99; AltName:
Full=bHLH transcription factor bHLH024
gi|11245494|gb|AAG33640.1|AF319540_1 SPATULA [Arabidopsis thaliana]
gi|110738410|dbj|BAF01131.1| putative bHLH transcription factor (AtbHLH024) / SPATULA (SPT)
[Arabidopsis thaliana]
gi|111074392|gb|ABH04569.1| At4g36930 [Arabidopsis thaliana]
gi|332661320|gb|AEE86720.1| transcription factor SPATULA [Arabidopsis thaliana]
Length = 373
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 73/103 (70%), Gaps = 6/103 (5%)
Query: 305 ECQSEAAGF----ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIP 360
+C+SE G E+ + S +R RAAEVHNLSE+RRR RINEKM+ALQ LIP
Sbjct: 166 DCESEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIP 225
Query: 361 HCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG--MAPLMFPG 401
+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G + PL PG
Sbjct: 226 NSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGINLHPLCLPG 268
>gi|356541789|ref|XP_003539355.1| PREDICTED: transcription factor SPATULA-like [Glycine max]
Length = 381
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 77/110 (70%), Gaps = 16/110 (14%)
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
EVHNLSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G+
Sbjct: 143 EVHNLSEKRRRGRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGL 202
Query: 395 A--PLMFP-GMQHY-MSRMGMGM------------GPPPLPSVTNPMHFS 428
+ P+ FP G+Q +S+MGM + PL NP+H++
Sbjct: 203 SLHPMCFPEGLQPLQLSQMGMELSERNRFTSLNMSATLPLHQDNNPLHYA 252
>gi|4006880|emb|CAB16798.1| putative protein [Arabidopsis thaliana]
gi|7270642|emb|CAB80359.1| putative protein [Arabidopsis thaliana]
Length = 415
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 74/105 (70%), Gaps = 6/105 (5%)
Query: 303 DSECQSEAAGF----ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQEL 358
+ +C+SE G E+ + S +R RAAEVHNLSE+RRR RINEKM+ALQ L
Sbjct: 164 EYDCESEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSL 223
Query: 359 IPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG--MAPLMFPG 401
IP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G + PL PG
Sbjct: 224 IPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGINLHPLCLPG 268
>gi|212720610|ref|NP_001131794.1| uncharacterized protein LOC100193167 [Zea mays]
gi|194692562|gb|ACF80365.1| unknown [Zea mays]
gi|413953032|gb|AFW85681.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 312
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 78/136 (57%), Gaps = 23/136 (16%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+RSRAAEVHNLSE+RRR +INEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++
Sbjct: 102 KRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQML 161
Query: 389 WMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVM 448
M R G+ + PP L P S Q + N
Sbjct: 162 SM-----------------RNGVYLNPPYLSGTIEPAQAS------QMFAAVGGGNITAS 198
Query: 449 CQASVLNPVNYQNQMQ 464
+V+ PVN + +Q
Sbjct: 199 SSGAVMPPVNQSSGLQ 214
>gi|297798162|ref|XP_002866965.1| hypothetical protein ARALYDRAFT_353119 [Arabidopsis lyrata subsp.
lyrata]
gi|297312801|gb|EFH43224.1| hypothetical protein ARALYDRAFT_353119 [Arabidopsis lyrata subsp.
lyrata]
Length = 354
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 73/104 (70%), Gaps = 7/104 (6%)
Query: 305 ECQSEAAGF----ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIP 360
+C+SE G E+ + S +R RAAEVHNLSE+RRR RINEKM+ALQ LIP
Sbjct: 145 DCESEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIP 204
Query: 361 HCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM---APLMFPG 401
+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G+ PL PG
Sbjct: 205 NSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGINLHHPLCLPG 248
>gi|388517319|gb|AFK46721.1| unknown [Medicago truncatula]
Length = 373
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 67/84 (79%), Gaps = 4/84 (4%)
Query: 323 QRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
+R+ R R A+VHNLSER+RRD+INEK+RAL+ELIP+CNK DKASMLD+AI+YLK+L+
Sbjct: 199 ERNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLK 258
Query: 383 LQLQVMWMGSGMAPLMFPGMQHYM 406
LQLQ+M MG L P + H+M
Sbjct: 259 LQLQIMSMGRA---LCMP-LNHFM 278
>gi|357511583|ref|XP_003626080.1| Transcription factor SPATULA [Medicago truncatula]
gi|355501095|gb|AES82298.1| Transcription factor SPATULA [Medicago truncatula]
Length = 373
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 64/78 (82%), Gaps = 4/78 (5%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
R R A+VHNLSER+RRD+INEK+RAL+ELIP+CNK DKASMLD+AI+YLK+L+LQLQ+M
Sbjct: 205 RSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIM 264
Query: 389 WMGSGMAPLMFPGMQHYM 406
MG L P + H+M
Sbjct: 265 SMGRA---LCMP-LNHFM 278
>gi|255548227|ref|XP_002515170.1| hypothetical protein RCOM_1343120 [Ricinus communis]
gi|223545650|gb|EEF47154.1| hypothetical protein RCOM_1343120 [Ricinus communis]
Length = 584
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 83/135 (61%), Gaps = 11/135 (8%)
Query: 290 GDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRIN 349
N L S ++ + A+ E+ + +S S ++ R +VH+LSER+RRD+IN
Sbjct: 338 ASNDLTHSSLKRTNAHLKEMASPSENADEEEEIPKSTSTKKKRIPQVHSLSERKRRDKIN 397
Query: 350 EKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM-GSG-MAPLMFPG------ 401
+KMRALQ LIP+ +K DKASMLD+AIEYLK+LQLQLQ+M M GS M P+M P
Sbjct: 398 KKMRALQALIPNSDKVDKASMLDKAIEYLKTLQLQLQMMSMRGSCYMPPMMIPTALQQIQ 457
Query: 402 ---MQHYMSRMGMGM 413
+ H+ MGM M
Sbjct: 458 APYLSHFSPMMGMRM 472
>gi|326497797|dbj|BAK05983.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 386
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 60/66 (90%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+R+RAAEVHNLSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++
Sbjct: 159 KRTRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQML 218
Query: 389 WMGSGM 394
M +G+
Sbjct: 219 SMRNGV 224
>gi|357437785|ref|XP_003589168.1| Transcription factor SPATULA [Medicago truncatula]
gi|355478216|gb|AES59419.1| Transcription factor SPATULA [Medicago truncatula]
Length = 287
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 66/91 (72%), Gaps = 12/91 (13%)
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S +RSRAAE HNLSE+RRR +INEK++ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q
Sbjct: 86 SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 145
Query: 387 VMWMGSGMA------------PLMFPGMQHY 405
++ + +G + P MFP + +
Sbjct: 146 MLMVRNGYSLHPMSLSGGSRPPTMFPQTELF 176
>gi|356553958|ref|XP_003545317.1| PREDICTED: transcription factor ALC-like [Glycine max]
Length = 181
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/63 (77%), Positives = 55/63 (87%)
Query: 326 GSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL 385
S +RSRAAE HNLSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+
Sbjct: 119 SSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQV 178
Query: 386 QVM 388
Q +
Sbjct: 179 QYL 181
>gi|302793783|ref|XP_002978656.1| hypothetical protein SELMODRAFT_39143 [Selaginella moellendorffii]
gi|300153465|gb|EFJ20103.1| hypothetical protein SELMODRAFT_39143 [Selaginella moellendorffii]
Length = 66
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/60 (85%), Positives = 57/60 (95%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+RSRAAEVHNLSER+RRDRINE+M+ALQELIP+ NKTDKASMLDEAIEYLK LQ QLQV+
Sbjct: 5 KRSRAAEVHNLSERKRRDRINERMKALQELIPNSNKTDKASMLDEAIEYLKLLQHQLQVV 64
>gi|297828431|ref|XP_002882098.1| hypothetical protein ARALYDRAFT_904169 [Arabidopsis lyrata subsp.
lyrata]
gi|297327937|gb|EFH58357.1| hypothetical protein ARALYDRAFT_904169 [Arabidopsis lyrata subsp.
lyrata]
Length = 413
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 293 SLKRKSRDAVDSECQSEAAGFESGAGNKTAQ-----RSGSCRRSRAAEVHNLSERRRRDR 347
SLKRK D + E + + + + Q R +R R+ EVH L ER+RRD
Sbjct: 182 SLKRKHGDIEEEESTYLSNNPDDESDDAKTQVHARIRKPVTKRKRSTEVHKLYERKRRDE 241
Query: 348 INEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPGMQHY 405
N+KMRALQ+++P+C K DKAS+LDEA++Y+++LQ Q+Q+M MG+G+ P+M P M HY
Sbjct: 242 FNKKMRALQDILPNCYKDDKASLLDEAVKYMRTLQHQVQMMSMGNGLIRPPMMLP-MGHY 300
Query: 406 MSRMGMGM 413
MG+GM
Sbjct: 301 -PPMGLGM 307
>gi|242066894|ref|XP_002454736.1| hypothetical protein SORBIDRAFT_04g036450 [Sorghum bicolor]
gi|241934567|gb|EES07712.1| hypothetical protein SORBIDRAFT_04g036450 [Sorghum bicolor]
Length = 277
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 60/66 (90%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ +KTDKASMLD+AIEYLK LQLQ+Q++
Sbjct: 43 KRSRAAEVHNLSEKRRRSRINEKMKALQTLIPNSSKTDKASMLDDAIEYLKQLQLQVQML 102
Query: 389 WMGSGM 394
M +G+
Sbjct: 103 SMRNGL 108
>gi|225457285|ref|XP_002284441.1| PREDICTED: transcription factor UNE10-like [Vitis vinifera]
Length = 423
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 2/97 (2%)
Query: 293 SLKRKSRDAVDSECQSEAAGFESGAGNKTAQ-RSGSCRRSRAAEVHNLSERRRRDRINEK 351
SLK K+ D DS C + + KT RS S RRSRAA +HN SERRRRDRIN+K
Sbjct: 184 SLKAKTTDE-DSACHGGSENQDEDRETKTQTGRSHSTRRSRAAAIHNQSERRRRDRINQK 242
Query: 352 MRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
M+ LQ+L+P+ +KTDKASMLDE IEYLK LQ Q+Q+M
Sbjct: 243 MKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMM 279
>gi|297733906|emb|CBI15153.3| unnamed protein product [Vitis vinifera]
Length = 385
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 2/97 (2%)
Query: 293 SLKRKSRDAVDSECQSEAAGFESGAGNKTAQ-RSGSCRRSRAAEVHNLSERRRRDRINEK 351
SLK K+ D DS C + + KT RS S RRSRAA +HN SERRRRDRIN+K
Sbjct: 146 SLKAKTTDE-DSACHGGSENQDEDRETKTQTGRSHSTRRSRAAAIHNQSERRRRDRINQK 204
Query: 352 MRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
M+ LQ+L+P+ +KTDKASMLDE IEYLK LQ Q+Q+M
Sbjct: 205 MKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMM 241
>gi|413939376|gb|AFW73927.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 279
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
Query: 306 CQSE-AAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
C+SE A G + A+ G +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ +K
Sbjct: 20 CESEDALGSSESDPARPARPRG--KRSRAAEVHNLSEKRRRSRINEKMKALQTLIPNSSK 77
Query: 365 TDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
TDKASMLD+AIEYLK LQLQ+Q++ M +G+
Sbjct: 78 TDKASMLDDAIEYLKHLQLQVQMLSMRNGL 107
>gi|219363643|ref|NP_001136510.1| uncharacterized protein LOC100216625 [Zea mays]
gi|194688606|gb|ACF78387.1| unknown [Zea mays]
gi|223949339|gb|ACN28753.1| unknown [Zea mays]
gi|413939377|gb|AFW73928.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 280
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
Query: 306 CQSE-AAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
C+SE A G + A+ G +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ +K
Sbjct: 20 CESEDALGSSESDPARPARPRG--KRSRAAEVHNLSEKRRRSRINEKMKALQTLIPNSSK 77
Query: 365 TDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
TDKASMLD+AIEYLK LQLQ+Q++ M +G+
Sbjct: 78 TDKASMLDDAIEYLKHLQLQVQMLSMRNGL 107
>gi|195639614|gb|ACG39275.1| hypothetical protein [Zea mays]
Length = 282
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Query: 303 DSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
+SE Q ES R +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+
Sbjct: 21 ESEVQDALGSSESDPARPARPRG---KRSRAAEVHNLSEKRRRSRINEKMKALQTLIPNS 77
Query: 363 NKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
+KTDKASMLD+AIEYLK LQLQ+Q++ M +G+
Sbjct: 78 SKTDKASMLDDAIEYLKHLQLQVQMLSMRNGL 109
>gi|224137582|ref|XP_002327162.1| predicted protein [Populus trichocarpa]
gi|222835477|gb|EEE73912.1| predicted protein [Populus trichocarpa]
Length = 310
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 110/198 (55%), Gaps = 19/198 (9%)
Query: 300 DAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELI 359
D D C SE G E A TA+ S +RSRAAEVHNLSE+RRR RINEKM+ALQ LI
Sbjct: 94 DLGDFSCDSEK-GVEVQA--NTARPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLI 150
Query: 360 PHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPG----MQHYMSRMGMGM 413
P+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +G++ P+ PG MQ +S M
Sbjct: 151 PNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGLSLHPMCLPGALQPMQLPLSGMSFDE 210
Query: 414 GPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYA 473
G L + T FS ++ S + N C S P+ + +N T
Sbjct: 211 GIGLLTTNTLTGIFS----ANEESSEQNSLNLPTQCTISN-QPITIPS---GTNITSSET 262
Query: 474 RYMGFHP-MQANSQPMNM 490
+ GF P + N P N+
Sbjct: 263 NF-GFEPQIHVNHAPFNL 279
>gi|342298442|emb|CBY05411.1| ALCATRAZ-like protein [Aethionema carneum]
Length = 224
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 71/98 (72%), Gaps = 8/98 (8%)
Query: 311 AGFESGAGNKTA---QRSGSCR---RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
AG E+ N+ A QR+ + R RS A+ HNLSE+RRR +INEKM+ALQ+LIP+ NK
Sbjct: 77 AGEENKTNNENALGNQRNKAVRTRQRSIDAKFHNLSEKRRRSKINEKMKALQKLIPNSNK 136
Query: 365 TDKASMLDEAIEYLKSLQLQLQVMWM--GSGMAPLMFP 400
TDKASMLDEAIEYLK LQLQ+Q + + G G+ P+ P
Sbjct: 137 TDKASMLDEAIEYLKQLQLQVQALAVMNGLGLNPMRLP 174
>gi|47497385|dbj|BAD19423.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 110
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 65/84 (77%)
Query: 306 CQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT 365
C+SE A S + T +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ +KT
Sbjct: 6 CESEEALGSSESEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKT 65
Query: 366 DKASMLDEAIEYLKSLQLQLQVMW 389
DKASMLD+AIEYLK LQLQ+Q+++
Sbjct: 66 DKASMLDDAIEYLKQLQLQVQMIY 89
>gi|357441955|ref|XP_003591255.1| Transcription factor PIF3 [Medicago truncatula]
gi|355480303|gb|AES61506.1| Transcription factor PIF3 [Medicago truncatula]
Length = 555
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 80/147 (54%), Gaps = 7/147 (4%)
Query: 266 IEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRS 325
+E V SSS SG+ +R S D LKRKSRD DSEC SE ES K A
Sbjct: 402 MEVAVASSSVCSGNGADRGSDDPNRD--LKRKSRDTEDSECHSEDVEDESVGVKKGAAGR 459
Query: 326 G--SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKS--- 380
G +RSRAAEVHNLSERRRRDRINEKMRALQELIP+CNK + YLK+
Sbjct: 460 GVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVSFFPSDFALLRYLKNCIK 519
Query: 381 LQLQLQVMWMGSGMAPLMFPGMQHYMS 407
L V + M P + Y S
Sbjct: 520 LWTSFVVFDKYRILVATMDPNLASYRS 546
>gi|356501827|ref|XP_003519725.1| PREDICTED: uncharacterized protein LOC100783804 [Glycine max]
Length = 852
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 63/86 (73%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
E K A+ +RSR A+VHNL ER+RRD+IN++MR L+ELIP+CNKTDKASMLD+
Sbjct: 733 EDVVKEKPAREGTGVKRSRNAQVHNLCERKRRDKINKRMRILKELIPNCNKTDKASMLDD 792
Query: 374 AIEYLKSLQLQLQVMWMGSGMAPLMF 399
AIEYLK+L+LQ+QV + + F
Sbjct: 793 AIEYLKTLKLQIQVNFKSFSSYQIAF 818
>gi|226492870|ref|NP_001146411.1| uncharacterized protein LOC100279991 [Zea mays]
gi|219887061|gb|ACL53905.1| unknown [Zea mays]
Length = 254
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 58/67 (86%), Gaps = 3/67 (4%)
Query: 342 RRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMF 399
+RRRDRINEKMRALQELIP+CNK DKASMLDEAIEYLK+LQLQ+Q+M MGSG+ P++
Sbjct: 10 QRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGSGLCIPPMLL 69
Query: 400 -PGMQHY 405
P MQH
Sbjct: 70 PPAMQHL 76
>gi|297794285|ref|XP_002865027.1| hypothetical protein ARALYDRAFT_496889 [Arabidopsis lyrata subsp.
lyrata]
gi|297310862|gb|EFH41286.1| hypothetical protein ARALYDRAFT_496889 [Arabidopsis lyrata subsp.
lyrata]
Length = 206
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 75/118 (63%), Gaps = 17/118 (14%)
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
A++ S +R+ A+ HNLSE+RRR +INEKM+ALQ+LIP+ NKTDKASMLDEAIEYLK L
Sbjct: 79 AKQRNSLKRTIDAQFHNLSEKRRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQL 138
Query: 382 QLQLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSM 439
QLQ+Q + + + G+G+ P LP V P H ++Q M++
Sbjct: 139 QLQVQTLAVMN-----------------GLGLNPMRLPPVLPPTHTRINETLEQDMNL 179
>gi|51970054|dbj|BAD43719.1| putative bHLH transcription factor (bHLH073/ALCATRAZ) [Arabidopsis
thaliana]
Length = 210
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
A++ S +RS A+ HNLSE++RR +INEKM+ALQ+LIP+ NKTDKASMLDEAIEYLK L
Sbjct: 83 AKQRNSLKRSIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQL 142
Query: 382 QLQLQVMWM--GSGMAPLMFP 400
QLQ+Q + + G G+ P+ P
Sbjct: 143 QLQVQTLAVMNGLGLNPMRLP 163
>gi|145334165|ref|NP_001078463.1| transcription factor bHLH127 [Arabidopsis thaliana]
gi|75296238|sp|Q7XHI7.1|BH127_ARATH RecName: Full=Transcription factor bHLH127; AltName: Full=Basic
helix-loop-helix protein 127; Short=AtbHLH127;
Short=bHLH 127; AltName: Full=bHLH transcription factor
bHLH127
gi|33111973|emb|CAE12173.1| putative bHLH127 transcription factor [Arabidopsis thaliana]
gi|332660148|gb|AEE85548.1| transcription factor bHLH127 [Arabidopsis thaliana]
Length = 307
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 96/175 (54%), Gaps = 27/175 (15%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
G + A+ S S +RSRAAE+HNL+ERRRR++INE+M+ LQ+LIP CNK+ K SML++ IEY
Sbjct: 136 GTEEARGSTSRKRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEY 195
Query: 378 LKSLQLQLQV----MWMGSGMAPLMFP-GMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPL 432
+KSL++Q+ M MG P P Q +M+ +G PP P F +
Sbjct: 196 VKSLEMQINQFMPHMAMGMNQPPAYIPFPSQAHMAGVGPSYPPPRYP-------FPNIQT 248
Query: 433 VDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQP 487
D S V Q+ NPV+ Q QM Y +++G H MQ + P
Sbjct: 249 FDPS---------RVWLQSPQPNPVSNQPQM------NPYGQFVGHHQMQQSLPP 288
>gi|255541166|ref|XP_002511647.1| DNA binding protein, putative [Ricinus communis]
gi|223548827|gb|EEF50316.1| DNA binding protein, putative [Ricinus communis]
Length = 465
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 87/143 (60%), Gaps = 12/143 (8%)
Query: 278 GSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVH 337
G F TS S +N+ + D DS C S+ + G + S S +RSRAA +H
Sbjct: 234 GVGFTSTSFGSQ-ENTKTATAVDENDSVCHSDDDDKQKANG----KSSVSTKRSRAAAIH 288
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPL 397
N SER+RRD+IN++M+ LQ+L+P+ +KTDKASMLDE IEYLK LQ Q+Q+M + P+
Sbjct: 289 NQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMM-SRMNIQPV 347
Query: 398 MFP-GMQH-----YMSRMGMGMG 414
M P MQ ++ M MGMG
Sbjct: 348 MLPMTMQQQLQMSMLAPMNMGMG 370
>gi|356495899|ref|XP_003516808.1| PREDICTED: transcription factor UNE10-like [Glycine max]
Length = 458
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 275 GGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNK---TAQRSGSCRRS 331
G + +S N S+ + K + D DS S+ G + G K + S S +RS
Sbjct: 210 GFTSTSINSLENTSSAKHCTKTTTVDDHDSVSHSKPVGEDQDEGKKKRANGKSSVSTKRS 269
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV---M 388
RAA +HN SER+RRD+IN++M+ LQ+L+P+ +K+DKASMLDE IEYLK LQ QLQ+ +
Sbjct: 270 RAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKSDKASMLDEVIEYLKQLQAQLQMINRI 329
Query: 389 WMGSGMAPL 397
M S M PL
Sbjct: 330 NMSSMMLPL 338
>gi|357482855|ref|XP_003611714.1| Transcription factor SPATULA [Medicago truncatula]
gi|355513049|gb|AES94672.1| Transcription factor SPATULA [Medicago truncatula]
Length = 344
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 92/160 (57%), Gaps = 26/160 (16%)
Query: 270 VTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEA---AGFESGAGNKTAQRSG 326
VTSSS G+G + D + +C+SE A E
Sbjct: 61 VTSSSVGAGGGLS---------------GNDTDEYDCESEEGVEALIEEVPTKSVGASRS 105
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q
Sbjct: 106 SSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 165
Query: 387 VMWMGSGMA--PLMFPGMQHY--MSRMGM----GMGPPPL 418
++ + +G++ P+ F H +SRM G G PL
Sbjct: 166 MLSLRNGLSLHPMYFHEGLHSLPLSRMSTELSEGNGSNPL 205
>gi|15240202|ref|NP_201512.1| transcription factor ALC [Arabidopsis thaliana]
gi|75309083|sp|Q9FHA2.1|ALC_ARATH RecName: Full=Transcription factor ALC; AltName: Full=Basic
helix-loop-helix protein 73; Short=AtbHLH73; Short=bHLH
73; AltName: Full=Protein ALCATRAZ; AltName:
Full=Transcription factor EN 98; AltName: Full=bHLH
transcription factor bHLH073
gi|10177598|dbj|BAB10945.1| unnamed protein product [Arabidopsis thaliana]
gi|114050687|gb|ABI49493.1| At5g67110 [Arabidopsis thaliana]
gi|332010918|gb|AED98301.1| transcription factor ALC [Arabidopsis thaliana]
Length = 210
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
A++ S +R+ A+ HNLSE++RR +INEKM+ALQ+LIP+ NKTDKASMLDEAIEYLK L
Sbjct: 83 AKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQL 142
Query: 382 QLQLQVMWM--GSGMAPLMFP 400
QLQ+Q + + G G+ P+ P
Sbjct: 143 QLQVQTLAVMNGLGLNPMRLP 163
>gi|21536863|gb|AAM61195.1| unknown [Arabidopsis thaliana]
Length = 210
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
A++ S +R+ A+ HNLSE++RR +INEKM+ALQ+LIP+ NKTDKASMLDEAIEYLK L
Sbjct: 83 AKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQL 142
Query: 382 QLQLQVMWM--GSGMAPLMFP 400
QLQ+Q + + G G+ P+ P
Sbjct: 143 QLQVQTLAVMNGLGLNPMRLP 163
>gi|224081688|ref|XP_002306475.1| predicted protein [Populus trichocarpa]
gi|222855924|gb|EEE93471.1| predicted protein [Populus trichocarpa]
Length = 220
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 68/92 (73%), Gaps = 3/92 (3%)
Query: 298 SRDAVDSECQSEAA-GFESGAGNKTAQRS--GSCRRSRAAEVHNLSERRRRDRINEKMRA 354
S + D EC E+ G E+ + + + S +R+RAAEVHNLSE+RRR RINEKM+A
Sbjct: 101 SENETDHECDCESEEGLEALIDEMSVKPAPPRSSKRTRAAEVHNLSEKRRRSRINEKMKA 160
Query: 355 LQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
LQ LIP+ +KTDKASMLDEAIEYLK LQLQ+Q
Sbjct: 161 LQNLIPNSSKTDKASMLDEAIEYLKLLQLQVQ 192
>gi|242092116|ref|XP_002436548.1| hypothetical protein SORBIDRAFT_10g004500 [Sorghum bicolor]
gi|241914771|gb|EER87915.1| hypothetical protein SORBIDRAFT_10g004500 [Sorghum bicolor]
Length = 291
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 56/62 (90%)
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGS 392
AAEVHNLSE+RRR +INEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q++ M +
Sbjct: 84 AAEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRN 143
Query: 393 GM 394
G+
Sbjct: 144 GV 145
>gi|342298438|emb|CBY05409.1| ALCATRAZ-like protein [Lepidium campestre]
Length = 197
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S +R+ A+ HNLSE+RRR +INEKM+ALQ+LIP+ NKTDKASMLDEAIEYLK LQLQ+Q
Sbjct: 87 SLKRNIDAQFHNLSEKRRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 146
Query: 387 VMWM--GSGMAPLMFP 400
+ + G G+ P+ P
Sbjct: 147 TLAVMNGLGLNPMQLP 162
>gi|326511035|dbj|BAJ91865.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 296
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 67/83 (80%), Gaps = 2/83 (2%)
Query: 314 ESGAGNKTAQRSGSCR--RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
E G+ ++ +G R R+RAAEVHNLSE+RRR +INEKM+ALQ L+P+ +KTDKASML
Sbjct: 30 EEALGSSESEPAGRPRGKRARAAEVHNLSEKRRRCKINEKMKALQSLVPNSSKTDKASML 89
Query: 372 DEAIEYLKSLQLQLQVMWMGSGM 394
D+AIEYLK LQLQ+Q++ M +G+
Sbjct: 90 DDAIEYLKHLQLQVQMLSMRNGV 112
>gi|302805681|ref|XP_002984591.1| hypothetical protein SELMODRAFT_29179 [Selaginella moellendorffii]
gi|300147573|gb|EFJ14236.1| hypothetical protein SELMODRAFT_29179 [Selaginella moellendorffii]
Length = 64
Score = 98.2 bits (243), Expect = 9e-18, Method: Composition-based stats.
Identities = 51/60 (85%), Positives = 57/60 (95%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+RSRAAEVHNLSER+RRDRINE+M+ALQELIP+ NKTDKASMLDEAIEYLK LQ QLQV+
Sbjct: 5 KRSRAAEVHNLSERKRRDRINERMKALQELIPNSNKTDKASMLDEAIEYLKLLQHQLQVV 64
>gi|342298426|emb|CBY05403.1| ALCATRAZ-like protein [Lepidium appelianum]
Length = 173
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S +R+ A+ HNLSE+RRR +INEKM+ALQ+LIP+ NKTDKASMLDEAIEY+K LQLQ+Q
Sbjct: 87 SLKRNIDAQFHNLSEKRRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYMKQLQLQVQ 146
Query: 387 VMWM--GSGMAPLMF 399
+ + G G+ P+
Sbjct: 147 TLAVMNGLGLNPMQL 161
>gi|356541324|ref|XP_003539128.1| PREDICTED: transcription factor UNE10-like [Glycine max]
Length = 459
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 5/125 (4%)
Query: 278 GSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAA--GFESGAGNKTAQRSGSCRRSRAAE 335
G +F TS S + S + E + G E + S S +RSRAA
Sbjct: 214 GVAFTSTSINSLENTSYAKHCTKTTTIEEHDSVSHNGDEEKKKRANGKSSVSTKRSRAAA 273
Query: 336 VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM---WMGS 392
+HN SER+RRD+IN++M+ LQ+L+P+ +KTDKASMLDE IEYLK LQ Q+Q+M M S
Sbjct: 274 IHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSS 333
Query: 393 GMAPL 397
M PL
Sbjct: 334 MMLPL 338
>gi|449445700|ref|XP_004140610.1| PREDICTED: transcription factor UNE10-like [Cucumis sativus]
Length = 478
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 55/65 (84%)
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
A+ S S +RSRAA +HN SER+RRD+IN++M+ LQ+L+P+ NKTDKASMLDE IEYLK L
Sbjct: 283 AKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSNKTDKASMLDEVIEYLKQL 342
Query: 382 QLQLQ 386
Q Q+Q
Sbjct: 343 QAQVQ 347
>gi|449515887|ref|XP_004164979.1| PREDICTED: transcription factor UNE10-like [Cucumis sativus]
Length = 478
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 55/65 (84%)
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
A+ S S +RSRAA +HN SER+RRD+IN++M+ LQ+L+P+ NKTDKASMLDE IEYLK L
Sbjct: 283 AKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSNKTDKASMLDEVIEYLKQL 342
Query: 382 QLQLQ 386
Q Q+Q
Sbjct: 343 QAQVQ 347
>gi|356506557|ref|XP_003522046.1| PREDICTED: transcription factor UNE10-like [Glycine max]
Length = 397
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 79/128 (61%), Gaps = 6/128 (4%)
Query: 267 EPTVTSSSGGSGSSFNRTS--KQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQR 324
E +VT +S GS N TS KQ TG + RD++ E K +
Sbjct: 168 ELSVTFNSATKGSPENTTSSGKQCTGTTT--NDDRDSISHRISQGEVPDEDYKATKVDRS 225
Query: 325 SGSCRRSRA-AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
SGS +R +A + VH SERRRRD+IN++M+ LQ+L+P+ +KTDKASMLDE I+Y+K LQ
Sbjct: 226 SGSNKRIKANSVVHKQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQA 285
Query: 384 QLQVM-WM 390
Q+Q+M WM
Sbjct: 286 QVQMMNWM 293
>gi|145334163|ref|NP_001078462.1| transcription factor bHLH119 [Arabidopsis thaliana]
gi|218563522|sp|Q8GT73.2|BH119_ARATH RecName: Full=Transcription factor bHLH119; AltName: Full=Basic
helix-loop-helix protein 119; Short=AtbHLH119;
Short=bHLH 119; AltName: Full=Transcription factor EN
104; AltName: Full=bHLH transcription factor bHLH119
gi|332660147|gb|AEE85547.1| transcription factor bHLH119 [Arabidopsis thaliana]
Length = 544
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 132/257 (51%), Gaps = 33/257 (12%)
Query: 260 RGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKR-KSRDAVDSECQSEAAGFESGAG 318
RGK E TS SG + + R Q + + K R+ +E Q G
Sbjct: 294 RGKEVATETAGTSYSGVNKAETERVQIQPERETKITEDKKREETIAEIQ----------G 343
Query: 319 NKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYL 378
+ A S S +RSRAA++HNLSERRRR+RINE+M+ LQEL+P C KTDK SML++ IEY+
Sbjct: 344 TEEAHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVIEYV 403
Query: 379 KSLQLQLQVMWMGSGMAPLMFP--GMQHYMSRMGMGMG----PPPL-----PSVTNPMHF 427
KSLQLQ+Q+M MG GM P M Q +M M MGM PPP + P H
Sbjct: 404 KSLQLQIQMMSMGHGMMPPMMHEGNTQQFMPHMAMGMKGMNRPPPFVPFPGKTFPRPGHM 463
Query: 428 SRV----PLVDQSMSMAQAQNRAVMCQASVL-NPVNYQNQMQNSNFTEQYARYMGFHPMQ 482
+ V P + QA + + + S+ NPV NQ + + Y++++G H MQ
Sbjct: 464 AGVGPSYPALRYPFPDTQASDLSRVHVPSLHSNPVP--NQPRFPAYINPYSQFVGLHQMQ 521
Query: 483 ANSQPMNMFRFGSPTMQ 499
P+ G PT Q
Sbjct: 522 QPPLPLQ----GQPTSQ 534
>gi|20127012|gb|AAM10933.1|AF488561_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 399
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 17/131 (12%)
Query: 258 SERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGA 317
S+R +T + TS+S GS DN++ D DS C S +
Sbjct: 156 SQRLTMDTYDVGFTSTSMGSH------------DNTI-----DDHDSVCHSRPQMEDEEE 198
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
+ S S +RSRAA +HN SER+RRD+IN++M+ LQ+L+P+ +KTDKASMLDE IEY
Sbjct: 199 KKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEY 258
Query: 378 LKSLQLQLQVM 388
LK LQ Q+ +M
Sbjct: 259 LKQLQAQVSMM 269
>gi|30678541|ref|NP_191916.3| transcription factor UNE10 [Arabidopsis thaliana]
gi|75299638|sp|Q8GZ38.1|UNE10_ARATH RecName: Full=Transcription factor UNE10; AltName: Full=Basic
helix-loop-helix protein 16; Short=AtbHLH16; Short=bHLH
16; AltName: Full=Protein UNFERTILIZED EMBRYO SAC 10;
AltName: Full=Transcription factor EN 108; AltName:
Full=bHLH transcription factor bHLH016
gi|26449558|dbj|BAC41905.1| putative bHLH transcription factor bHLH016 [Arabidopsis thaliana]
gi|109134123|gb|ABG25060.1| At4g00050 [Arabidopsis thaliana]
gi|332656418|gb|AEE81818.1| transcription factor UNE10 [Arabidopsis thaliana]
Length = 399
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 17/131 (12%)
Query: 258 SERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGA 317
S+R +T + TS+S GS DN++ D DS C S +
Sbjct: 156 SQRLTMDTYDVGFTSTSMGSH------------DNTI-----DDHDSVCHSRPQMEDEEE 198
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
+ S S +RSRAA +HN SER+RRD+IN++M+ LQ+L+P+ +KTDKASMLDE IEY
Sbjct: 199 KKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEY 258
Query: 378 LKSLQLQLQVM 388
LK LQ Q+ +M
Sbjct: 259 LKQLQAQVSMM 269
>gi|218184992|gb|EEC67419.1| hypothetical protein OsI_34609 [Oryza sativa Indica Group]
Length = 465
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 56/70 (80%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
G + S S +RSRAA +HN SER+RRDRIN+KM+ LQ+L+P+ +KTDKASMLDE I+Y
Sbjct: 261 GEGAMRSSISTKRSRAAAIHNESERKRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDY 320
Query: 378 LKSLQLQLQV 387
LK LQ Q+QV
Sbjct: 321 LKQLQAQVQV 330
>gi|297814329|ref|XP_002875048.1| hypothetical protein ARALYDRAFT_912247 [Arabidopsis lyrata subsp.
lyrata]
gi|297320885|gb|EFH51307.1| hypothetical protein ARALYDRAFT_912247 [Arabidopsis lyrata subsp.
lyrata]
Length = 403
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 17/131 (12%)
Query: 258 SERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGA 317
S+R +T + TS+S GS DN++ D DS C S +
Sbjct: 158 SQRLTMDTYDVGFTSTSMGSQ------------DNTI-----DDHDSVCHSRPQMEDEEE 200
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
+ S S +RSRAA +HN SER+RRD+IN++M+ LQ+L+P+ +KTDKASMLDE IEY
Sbjct: 201 KKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKILQKLVPNSSKTDKASMLDEVIEY 260
Query: 378 LKSLQLQLQVM 388
LK LQ Q+ +M
Sbjct: 261 LKQLQAQVSMM 271
>gi|357143431|ref|XP_003572919.1| PREDICTED: transcription factor SPATULA-like [Brachypodium
distachyon]
Length = 312
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 10/87 (11%)
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
EVHNLSE+RRR RINEKM+ALQ L+P+ +KTDKASMLD+AIEYLK LQLQ+Q++ M +G+
Sbjct: 68 EVHNLSEKRRRCRINEKMKALQSLVPNSSKTDKASMLDDAIEYLKQLQLQVQMLSMRNGL 127
Query: 395 APLMFPGMQHYMSRMGMGMGPPPLPSV 421
Y+ ++ + +G P P+
Sbjct: 128 ----------YLPQVNLPVGAPEPPAA 144
>gi|357118504|ref|XP_003560994.1| PREDICTED: transcription factor bHLH66-like [Brachypodium
distachyon]
Length = 388
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 185 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 244
Query: 388 MWM-----GSGMAPLM 398
+ M +GMAPL+
Sbjct: 245 LSMSRLGGAAGMAPLV 260
>gi|449457905|ref|XP_004146688.1| PREDICTED: uncharacterized protein LOC101211609 [Cucumis sativus]
gi|449529094|ref|XP_004171536.1| PREDICTED: uncharacterized protein LOC101228749 [Cucumis sativus]
Length = 422
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 102/202 (50%), Gaps = 39/202 (19%)
Query: 235 YDLDMSRASSSGLNDDVRK----VISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQ--- 287
+DL+ S ++DD + SP+ + ++ + S G SGS+ N +
Sbjct: 81 WDLNPINKPSRDISDDPHQNHLTATSPAAKAAV-MLQQQLLLSRGMSGSAGNGVADHGLP 139
Query: 288 ----STGDNSLKRKSRDAVDSEC----------QSEAAGFESGAGNKTA----------- 322
S G+ L R D VD C QS + G N+T
Sbjct: 140 PMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSNSFGAPGNVMNQTPGGGSAGVSQSQ 199
Query: 323 -QRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
++ RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K L
Sbjct: 200 PKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFL 259
Query: 382 QLQLQVMWM-----GSGMAPLM 398
QLQ++V+ M + +APL+
Sbjct: 260 QLQVKVLSMSRLGGAAAVAPLV 281
>gi|93280154|gb|ABF06705.1| Joka8 [Nicotiana plumbaginifolia]
Length = 360
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 69/101 (68%), Gaps = 9/101 (8%)
Query: 307 QSEAAGFESGAGNKTA----QRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
Q+ AA +G G A Q+ RR +A + H+++ER RR+RI E+M+ALQEL+P+
Sbjct: 224 QTPAASGSAGGGTTPAAQPKQQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNA 283
Query: 363 NKTDKASMLDEAIEYLKSLQLQLQVMWM-----GSGMAPLM 398
NKTDKASMLDE I+Y+K LQLQ++V+ M + +APL+
Sbjct: 284 NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 324
>gi|147836162|emb|CAN75431.1| hypothetical protein VITISV_021146 [Vitis vinifera]
Length = 486
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 67/97 (69%), Gaps = 6/97 (6%)
Query: 307 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 366
Q+ A G GA + QR RR +A H+++ER RR+RI E+M+ALQEL+P+ NKTD
Sbjct: 242 QTPATGSAGGAPAQPRQRV-RARRGQATHPHSIAERLRRERIAERMKALQELVPNANKTD 300
Query: 367 KASMLDEAIEYLKSLQLQLQVMWM-----GSGMAPLM 398
KASMLDE I+Y+K LQLQ++V+ M + +APL+
Sbjct: 301 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 337
>gi|255565001|ref|XP_002523493.1| conserved hypothetical protein [Ricinus communis]
gi|223537200|gb|EEF38832.1| conserved hypothetical protein [Ricinus communis]
Length = 474
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 69/97 (71%), Gaps = 6/97 (6%)
Query: 307 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 366
Q +A+G GA + QR RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTD
Sbjct: 238 QPQASGSTGGAPAQPRQRV-RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD 296
Query: 367 KASMLDEAIEYLKSLQLQLQVMWM-----GSGMAPLM 398
KASMLDE I+Y+K LQLQ++V+ M + +APL+
Sbjct: 297 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 333
>gi|55773907|dbj|BAD72512.1| bHLH transcription factor PTF1-like [Oryza sativa Japonica Group]
Length = 420
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 206 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 265
Query: 388 MWM-----GSGMAPLM 398
+ M +GMAPL+
Sbjct: 266 LSMSRLGGAAGMAPLV 281
>gi|218197712|gb|EEC80139.1| hypothetical protein OsI_21931 [Oryza sativa Indica Group]
Length = 420
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 206 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 265
Query: 388 MWM-----GSGMAPLM 398
+ M +GMAPL+
Sbjct: 266 LSMSRLGGAAGMAPLV 281
>gi|224143968|ref|XP_002325140.1| predicted protein [Populus trichocarpa]
gi|222866574|gb|EEF03705.1| predicted protein [Populus trichocarpa]
Length = 251
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 69/97 (71%), Gaps = 6/97 (6%)
Query: 307 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 366
Q +A+G GA + QR RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTD
Sbjct: 19 QPQASGSNGGAPAQPRQRV-RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD 77
Query: 367 KASMLDEAIEYLKSLQLQLQVMWM-----GSGMAPLM 398
KASMLDE I+Y+K LQLQ++V+ M + +APL+
Sbjct: 78 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 114
>gi|297743632|emb|CBI36515.3| unnamed protein product [Vitis vinifera]
Length = 282
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 68/97 (70%), Gaps = 6/97 (6%)
Query: 307 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 366
Q+ A G GA + QR RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTD
Sbjct: 86 QTPATGSAGGAPAQPRQRV-RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTD 144
Query: 367 KASMLDEAIEYLKSLQLQLQVMWM-----GSGMAPLM 398
KASMLDE I+Y+K LQLQ++V+ M + +APL+
Sbjct: 145 KASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 181
>gi|356564915|ref|XP_003550692.1| PREDICTED: transcription factor bHLH69-like [Glycine max]
Length = 369
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G G+ ++ RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I
Sbjct: 187 GGGSGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEII 246
Query: 376 EYLKSLQLQLQVMWM-----GSGMAPLMFPG 401
+Y+K LQLQ++V+ M + +APL+ G
Sbjct: 247 DYVKFLQLQVKVLSMSRLGGAAAVAPLVAEG 277
>gi|223702404|gb|ACN21633.1| putative basic helix-loop-helix protein BHLH9 [Lotus japonicus]
Length = 165
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 55/65 (84%)
Query: 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
+RAAEV NLS +RRR RINE M+ALQ LIP+ NKTDKA MLDEAI+YLK LQLQ+Q++ +
Sbjct: 74 TRAAEVLNLSGKRRRSRINENMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQMLSL 133
Query: 391 GSGMA 395
+G++
Sbjct: 134 RNGLS 138
>gi|357147364|ref|XP_003574318.1| PREDICTED: transcription factor UNE10-like isoform 2 [Brachypodium
distachyon]
Length = 453
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 11/120 (9%)
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG 326
E T +S GG +S +R +R RD + E ++ E ++ S
Sbjct: 206 ETTENTSFGGGAASDSRYFS--------RRSQRDGLCDEAETVVIKEEPPMRMRS---SI 254
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S +RSRAA +HN SER+RRDRIN+KM+ LQ+L+P+ +KTDKASMLDE IE+LK LQ Q+Q
Sbjct: 255 STKRSRAAAIHNESERKRRDRINQKMQTLQKLVPNSSKTDKASMLDEVIEHLKQLQAQVQ 314
>gi|357147361|ref|XP_003574317.1| PREDICTED: transcription factor UNE10-like isoform 1 [Brachypodium
distachyon]
Length = 460
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 11/120 (9%)
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG 326
E T +S GG +S +R +R RD + E ++ E ++ S
Sbjct: 206 ETTENTSFGGGAASDSRYFS--------RRSQRDGLCDEAETVVIKEEPPMRMRS---SI 254
Query: 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
S +RSRAA +HN SER+RRDRIN+KM+ LQ+L+P+ +KTDKASMLDE IE+LK LQ Q+Q
Sbjct: 255 STKRSRAAAIHNESERKRRDRINQKMQTLQKLVPNSSKTDKASMLDEVIEHLKQLQAQVQ 314
>gi|302809450|ref|XP_002986418.1| hypothetical protein SELMODRAFT_425336 [Selaginella moellendorffii]
gi|300145954|gb|EFJ12627.1| hypothetical protein SELMODRAFT_425336 [Selaginella moellendorffii]
Length = 355
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%), Gaps = 6/77 (7%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR++I E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 138 ARRGQATDPHSIAERLRREKIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 197
Query: 388 MWM------GSGMAPLM 398
+ M G+ MAPL+
Sbjct: 198 LSMSRLGGAGATMAPLV 214
>gi|168048453|ref|XP_001776681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671973|gb|EDQ58517.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 233
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 58/76 (76%), Gaps = 4/76 (5%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 34 ARRGQATDPHSIAERLRRERIAERMKALQELVPNSNKTDKASMLDEIIDYVKFLQLQVKV 93
Query: 388 MWM----GSGMAPLMF 399
+ M G+G P +
Sbjct: 94 LSMSRLGGAGALPSLV 109
>gi|356530637|ref|XP_003533887.1| PREDICTED: transcription factor bHLH66-like [Glycine max]
Length = 452
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 227 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 286
Query: 388 MWM-----GSGMAPLM 398
+ M + +APL+
Sbjct: 287 LSMSRLGGAAAVAPLV 302
>gi|227345480|gb|ACP28172.1| roothairless1/slippery [Lotus japonicus]
Length = 386
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 176 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 235
Query: 388 MWM-----GSGMAPLM 398
+ M + +APL+
Sbjct: 236 LSMSRLGGAAAVAPLV 251
>gi|356556714|ref|XP_003546668.1| PREDICTED: transcription factor bHLH66-like [Glycine max]
Length = 475
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 255 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 314
Query: 388 MWM-----GSGMAPLM 398
+ M + +APL+
Sbjct: 315 LSMSRLGGAAAVAPLV 330
>gi|12957703|gb|AAK09221.1|AC084320_8 putative phytochrome interacting factor [Oryza sativa Japonica
Group]
Length = 263
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%), Gaps = 3/72 (4%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTA-QRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
KRK R+ DS+ +SE A E+ K++ +R GS RR+RAAEVHNLSERRRRDRINEKMR
Sbjct: 184 KRKGRE--DSDSRSEDAECEATEETKSSSRRYGSKRRTRAAEVHNLSERRRRDRINEKMR 241
Query: 354 ALQELIPHCNKT 365
ALQELIPHCNK
Sbjct: 242 ALQELIPHCNKV 253
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 20 MKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSNLI 79
M DNELVELLW NG VV +P+ Q + + SG ++S L
Sbjct: 1 MAICSTDNELVELLWHNGGVVA---------------QPQAAQARVVSSSGRGQSASVLT 45
Query: 80 QDD-ETVSWIHCPIEDSFEKDFYSQLF 105
DD ET +W ++D+ EKD Y+QL+
Sbjct: 46 GDDTETAAWFPDTLDDALEKDLYTQLW 72
>gi|168043431|ref|XP_001774188.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674456|gb|EDQ60964.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 231
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 33 ARRGQATDPHSIAERLRRERIAERMKALQELVPNSNKTDKASMLDEIIDYVKFLQLQVKV 92
Query: 388 MWM 390
+ M
Sbjct: 93 LSM 95
>gi|359484248|ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257707 [Vitis vinifera]
Length = 536
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%)
Query: 311 AGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASM 370
G SG N T + RR +A + H+++ER RR++I E+M+ LQEL+P+ NKTDKASM
Sbjct: 281 VGTASGGCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASM 340
Query: 371 LDEAIEYLKSLQLQLQVMWM 390
LDE IEY+K LQLQ++V+ M
Sbjct: 341 LDEIIEYVKFLQLQVKVLSM 360
>gi|297738502|emb|CBI27747.3| unnamed protein product [Vitis vinifera]
Length = 389
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%)
Query: 311 AGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASM 370
G SG N T + RR +A + H+++ER RR++I E+M+ LQEL+P+ NKTDKASM
Sbjct: 134 VGTASGGCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASM 193
Query: 371 LDEAIEYLKSLQLQLQVMWM 390
LDE IEY+K LQLQ++V+ M
Sbjct: 194 LDEIIEYVKFLQLQVKVLSM 213
>gi|51970922|dbj|BAD44153.1| putative bHLH transcription factor (bHLH066) [Arabidopsis thaliana]
Length = 350
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 140 ARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKV 199
Query: 388 MWM 390
+ M
Sbjct: 200 LSM 202
>gi|15224109|ref|NP_180003.1| transcription factor bHLH66 [Arabidopsis thaliana]
gi|75315918|sp|Q9ZUG9.1|BH066_ARATH RecName: Full=Transcription factor bHLH66; AltName: Full=Basic
helix-loop-helix protein 66; Short=AtbHLH66; Short=bHLH
66; AltName: Full=Transcription factor EN 95; AltName:
Full=bHLH transcription factor bHLH066
gi|4115386|gb|AAD03387.1| unknown protein [Arabidopsis thaliana]
gi|51970882|dbj|BAD44133.1| putative bHLH transcription factor (bHLH066) [Arabidopsis thaliana]
gi|111074492|gb|ABH04619.1| At2g24260 [Arabidopsis thaliana]
gi|330252457|gb|AEC07551.1| transcription factor bHLH66 [Arabidopsis thaliana]
Length = 350
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 140 ARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKV 199
Query: 388 MWM 390
+ M
Sbjct: 200 LSM 202
>gi|297825371|ref|XP_002880568.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297326407|gb|EFH56827.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 353
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 140 ARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKV 199
Query: 388 MWM 390
+ M
Sbjct: 200 LSM 202
>gi|357480125|ref|XP_003610348.1| Transcription factor bHLH66 [Medicago truncatula]
gi|355511403|gb|AES92545.1| Transcription factor bHLH66 [Medicago truncatula]
Length = 400
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 61/76 (80%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQ+Q++V
Sbjct: 198 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKV 257
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 258 LSMSRLGGAGAVAPLV 273
>gi|357480123|ref|XP_003610347.1| Transcription factor bHLH66 [Medicago truncatula]
gi|355511402|gb|AES92544.1| Transcription factor bHLH66 [Medicago truncatula]
Length = 403
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 61/76 (80%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQ+Q++V
Sbjct: 201 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKV 260
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 261 LSMSRLGGAGAVAPLV 276
>gi|414589493|tpg|DAA40064.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 471
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE ++Y+K LQLQ++V
Sbjct: 242 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIVDYVKFLQLQVKV 301
Query: 388 MWM-----GSGMAPLM 398
+ M + +APL+
Sbjct: 302 LSMSRLGGAAAVAPLV 317
>gi|226496023|ref|NP_001141950.1| uncharacterized protein LOC100274099 [Zea mays]
gi|223945379|gb|ACN26773.1| unknown [Zea mays]
gi|414589494|tpg|DAA40065.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 470
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 59/76 (77%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE ++Y+K LQLQ++V
Sbjct: 241 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIVDYVKFLQLQVKV 300
Query: 388 MWM-----GSGMAPLM 398
+ M + +APL+
Sbjct: 301 LSMSRLGGAAAVAPLV 316
>gi|242084064|ref|XP_002442457.1| hypothetical protein SORBIDRAFT_08g020290 [Sorghum bicolor]
gi|241943150|gb|EES16295.1| hypothetical protein SORBIDRAFT_08g020290 [Sorghum bicolor]
Length = 353
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 320 KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLK 379
K GS RRS E HNL+E+RRR +INE+++ LQ+L+P C+K+++AS LD+ I Y+K
Sbjct: 180 KVPAAVGSSRRSHHGEGHNLTEKRRRHKINERLKTLQKLVPGCSKSNQASTLDQTIHYMK 239
Query: 380 SLQLQLQVMWMGSGMAPLMFPGMQ 403
SLQ Q+Q M +G AP ++P +Q
Sbjct: 240 SLQQQVQAMSVGLA-APAVYPVVQ 262
>gi|359489230|ref|XP_002275629.2| PREDICTED: transcription factor UNE10-like [Vitis vinifera]
Length = 465
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Query: 288 STGDNSLKRKSRDAVDSECQSEA---AGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRR 344
S+G K + D DS C S AG E T + S S +RSRAA +HN SER+R
Sbjct: 235 SSGKPCTKTITVDDHDSVCHSRPQRRAGDEEDKKRGTGKSSVSSKRSRAAAIHNQSERKR 294
Query: 345 RDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
RD+IN++M+ LQ+L+P+ +KTDKASMLDE IEYLK LQ Q+Q
Sbjct: 295 RDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQ 336
>gi|222617455|gb|EEE53587.1| hypothetical protein OsJ_36829 [Oryza sativa Japonica Group]
Length = 271
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 5/72 (6%)
Query: 355 LQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP--LMFP--GMQHYMSRMG 410
L EL+ TDKASMLDEAIEYLKSLQLQLQ+MWMG GMAP +MFP G+ YM RMG
Sbjct: 146 LVELLWCNGHTDKASMLDEAIEYLKSLQLQLQMMWMGGGMAPPAVMFPAAGVHQYMQRMG 205
Query: 411 -MGMGPPPLPSV 421
+GMGPP + S+
Sbjct: 206 AVGMGPPHMASL 217
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDWN + + P+G+D+ LVELLW NGH + + ++ + + Q
Sbjct: 121 MNQFVPDWN---TTSMGDGFAPLGEDDGLVELLWCNGH----TDKASMLDEAIEYLKSLQ 173
Query: 61 VQKQTLRGSG 70
+Q Q + G
Sbjct: 174 LQLQMMWMGG 183
>gi|413952903|gb|AFW85552.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 391
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%), Gaps = 6/77 (7%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+R +A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y++ LQLQ++V
Sbjct: 196 AKRGQATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVRFLQLQVKV 255
Query: 388 MWM------GSGMAPLM 398
+ M GMAPL+
Sbjct: 256 LSMSRLGGAAGGMAPLV 272
>gi|449443257|ref|XP_004139396.1| PREDICTED: transcription factor bHLH66-like [Cucumis sativus]
gi|449523179|ref|XP_004168602.1| PREDICTED: transcription factor bHLH66-like [Cucumis sativus]
Length = 421
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 52/61 (85%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 219 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 278
Query: 388 M 388
+
Sbjct: 279 L 279
>gi|19698849|gb|AAL91160.1| putative protein [Arabidopsis thaliana]
gi|23197682|gb|AAN15368.1| putative protein [Arabidopsis thaliana]
Length = 300
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 93/153 (60%), Gaps = 17/153 (11%)
Query: 219 SMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSG 278
S++TVG SHCGSNQ + ++ + +ND + V ER T + + S +
Sbjct: 146 SVITVGPSHCGSNQ-STNIHQATTLPVSMNDRSKNV---EERLDTSSGGSSGCSYGRNNK 201
Query: 279 SSFNRTSKQSTGDNSLKRKSRDAVDSECQSEA---AGFESG----AGNKTAQRSGSCRRS 331
+ + TS ++ RK + +D++ +S + G S GNK++QRSGS RRS
Sbjct: 202 ETVSGTSV------TIDRKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRS 255
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
RAAEVHNLSERRRRDRINE+M+ALQELIPHC++
Sbjct: 256 RAAEVHNLSERRRRDRINERMKALQELIPHCSR 288
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
M DWNFE + +S + + ++ELVELLW++G VVL SQA +R+PS+ +Q
Sbjct: 1 MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQA--RREPSVQVQTHKQ 58
Query: 61 VQKQTLRGSGSC--GNSSNL-------IQDDETVSWIHCPIEDSFE 97
+TLR + N + + D ETVSWI P +D +
Sbjct: 59 ---ETLRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPDDVID 101
>gi|295913203|gb|ADG57860.1| transcription factor [Lycoris longituba]
Length = 204
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 58/76 (76%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I Y+K LQLQ++V
Sbjct: 32 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIGYVKFLQLQVKV 91
Query: 388 MWM-----GSGMAPLM 398
+ M + +APL+
Sbjct: 92 LSMSRLGGAAAVAPLV 107
>gi|20127072|gb|AAM10955.1|AF488599_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 350
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y++ LQLQ++V
Sbjct: 140 ARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVEFLQLQVKV 199
Query: 388 MWM 390
+ M
Sbjct: 200 LSM 202
>gi|242063376|ref|XP_002452977.1| hypothetical protein SORBIDRAFT_04g035890 [Sorghum bicolor]
gi|241932808|gb|EES05953.1| hypothetical protein SORBIDRAFT_04g035890 [Sorghum bicolor]
Length = 393
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+R +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 197 AKRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 256
Query: 388 MWM 390
+ M
Sbjct: 257 LSM 259
>gi|356569963|ref|XP_003553163.1| PREDICTED: uncharacterized protein LOC100798306 [Glycine max]
Length = 113
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 61/92 (66%), Gaps = 8/92 (8%)
Query: 1 MNPCIPDWNFEGD--IPISNQMKPM-GQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNE 57
MN +PDWNF D + +NQ KPM G D ELVEL WQNG VV+ SQ T RKP +N
Sbjct: 1 MNNSVPDWNFGSDSCVTTTNQKKPMIGVDQELVELQWQNGQVVMHSQ--THRKPFVNSIT 58
Query: 58 PRQVQKQ---TLRGSGSCGNSSNLIQDDETVS 86
PR +++ TLR S GNSSNLIQDDET+S
Sbjct: 59 PRPLRRNFQSTLRTSEPFGNSSNLIQDDETLS 90
>gi|326518931|dbj|BAJ92626.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 463
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 100/210 (47%), Gaps = 26/210 (12%)
Query: 187 STAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSH--CGSNQVAYDLDMSRASS 244
+ AP G P G R + +G+V+ VG C S A R S
Sbjct: 123 AAAPWLGVGAPADGLVPCARGDDPAEGDVQRKRARVVGEDGRVCASQGSAAP---GRGES 179
Query: 245 SGLN--------DDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKR 296
S L DD+ + + + P ++S G G+S +R +R
Sbjct: 180 SLLTLEPCGTGADDLCGFTTTNNSTSLDQGSPETENTSFGGGASDSRCFS--------RR 231
Query: 297 KSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQ 356
RD + E ++ G + + S +RSRAA +HN SER+RRDRIN+KM+ LQ
Sbjct: 232 SQRDGLCDEAENVVV-----KGEAPMRSAISTKRSRAAAIHNESERKRRDRINQKMQTLQ 286
Query: 357 ELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
+L+P+ +KTDKASMLDE I++LK LQ +Q
Sbjct: 287 KLVPNSSKTDKASMLDEVIDHLKQLQATVQ 316
>gi|326502778|dbj|BAJ99017.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 464
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 100/210 (47%), Gaps = 26/210 (12%)
Query: 187 STAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSH--CGSNQVAYDLDMSRASS 244
+ AP G P G R + +G+V+ VG C S A R S
Sbjct: 123 AAAPWLGVGAPADGLVPCARGDDPAEGDVQRKRARVVGEDGRVCASQGSAAP---GRGES 179
Query: 245 SGLN--------DDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKR 296
S L DD+ + + + P ++S G G+S +R +R
Sbjct: 180 SLLTLEPCGTGADDLCGFTTTNNSTSLDQGSPETENTSFGGGASDSRCFS--------RR 231
Query: 297 KSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQ 356
RD + E ++ G + + S +RSRAA +HN SER+RRDRIN+KM+ LQ
Sbjct: 232 SQRDGLCDEAENVVV-----KGEAPMRSAISTKRSRAAAIHNESERKRRDRINQKMQTLQ 286
Query: 357 ELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
+L+P+ +KTDKASMLDE I++LK LQ +Q
Sbjct: 287 KLVPNSSKTDKASMLDEVIDHLKQLQATVQ 316
>gi|357137415|ref|XP_003570296.1| PREDICTED: uncharacterized protein LOC100827783 [Brachypodium
distachyon]
Length = 351
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P NKTDKASMLDE I+Y+K LQ+Q++V
Sbjct: 146 ARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDKASMLDEIIDYVKFLQVQVKV 205
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 206 LSMSRLGGAGAVAPLV 221
>gi|2980768|emb|CAA18195.1| putative protein [Arabidopsis thaliana]
gi|7270000|emb|CAB79816.1| putative protein [Arabidopsis thaliana]
Length = 367
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 5/91 (5%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGS----CRRSRAAEVHNLSERRRRDRINEKMRALQELI 359
++ QS+A + G TAQ RR +A + H+++ER RR+RI E+M++LQEL+
Sbjct: 162 TQTQSQATA-SATTGGATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELV 220
Query: 360 PHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
P+ NKTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 221 PNGNKTDKASMLDEIIDYVKFLQLQVKVLSM 251
>gi|30688869|ref|NP_194827.2| transcription factor bHLH69 [Arabidopsis thaliana]
gi|218563529|sp|Q8S3D5.2|BH069_ARATH RecName: Full=Transcription factor bHLH69; AltName: Full=Basic
helix-loop-helix protein 69; Short=AtbHLH69; Short=bHLH
69; AltName: Full=Transcription factor EN 94; AltName:
Full=bHLH transcription factor bHLH069
gi|225898837|dbj|BAH30549.1| hypothetical protein [Arabidopsis thaliana]
gi|332660437|gb|AEE85837.1| transcription factor bHLH69 [Arabidopsis thaliana]
Length = 310
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 5/91 (5%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGS----CRRSRAAEVHNLSERRRRDRINEKMRALQELI 359
++ QS+A + G TAQ RR +A + H+++ER RR+RI E+M++LQEL+
Sbjct: 105 TQTQSQATA-SATTGGATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELV 163
Query: 360 PHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
P+ NKTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 164 PNGNKTDKASMLDEIIDYVKFLQLQVKVLSM 194
>gi|20127075|gb|AAM10956.1|AF488601_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 310
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 5/91 (5%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGS----CRRSRAAEVHNLSERRRRDRINEKMRALQELI 359
++ QS+A + G TAQ RR +A + H+++ER RR+RI E+M++LQEL+
Sbjct: 105 TQTQSQATA-SATTGGATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELV 163
Query: 360 PHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
P+ NKTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 164 PNGNKTDKASMLDEIIDYVKFLQLQVKVLSM 194
>gi|297796719|ref|XP_002866244.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297312079|gb|EFH42503.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 297
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE IEY++ LQLQ++V
Sbjct: 101 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKV 160
Query: 388 MWM 390
+ M
Sbjct: 161 LSM 163
>gi|15242922|ref|NP_200609.1| transcription factor bHLH82 [Arabidopsis thaliana]
gi|75311535|sp|Q9LSQ3.1|BH082_ARATH RecName: Full=Transcription factor bHLH82; AltName: Full=Basic
helix-loop-helix protein 82; Short=AtbHLH82; Short=bHLH
82; AltName: Full=Transcription factor EN 96; AltName:
Full=bHLH transcription factor bHLH082
gi|8885595|dbj|BAA97525.1| unnamed protein product [Arabidopsis thaliana]
gi|332009604|gb|AED96987.1| transcription factor bHLH82 [Arabidopsis thaliana]
Length = 297
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE IEY++ LQLQ++V
Sbjct: 101 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKV 160
Query: 388 MWM 390
+ M
Sbjct: 161 LSM 163
>gi|226492543|ref|NP_001151181.1| LOC100284814 [Zea mays]
gi|195644858|gb|ACG41897.1| BHLH transcription factor [Zea mays]
Length = 390
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+R +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 190 AKRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKV 249
Query: 388 MWM 390
+ M
Sbjct: 250 LSM 252
>gi|294462676|gb|ADE76883.1| unknown [Picea sitchensis]
Length = 244
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%), Gaps = 10/73 (13%)
Query: 352 MRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFP-GMQHY--- 405
MRALQELIPHCNK+DKASMLDEAIEYLK+LQLQ+Q+M MG GM PL+FP GMQH+
Sbjct: 1 MRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIMSMGGGMGMPPLVFPGGMQHFQVP 60
Query: 406 ----MSRMGMGMG 414
+S MGMG+G
Sbjct: 61 QMAHLSPMGMGIG 73
>gi|297821098|ref|XP_002878432.1| hypothetical protein ARALYDRAFT_907776 [Arabidopsis lyrata subsp.
lyrata]
gi|297324270|gb|EFH54691.1| hypothetical protein ARALYDRAFT_907776 [Arabidopsis lyrata subsp.
lyrata]
Length = 347
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 324 RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R +R R AE +N ER++R IN+KMR LQ+L+P+ +K D SMLDEAI Y+K+L+L
Sbjct: 147 RKALVKRKRNAEANNSPERKQRRDINKKMRTLQDLLPNSHKDDNESMLDEAIIYMKNLKL 206
Query: 384 QLQVMWMGSGMAP--LMFPGMQHYMSRMGMGMG 414
Q+Q+M MG+ +M P HY S+MG+ MG
Sbjct: 207 QVQMMTMGNRFVTPSMMLPLGLHY-SQMGLAMG 238
>gi|297798868|ref|XP_002867318.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297313154|gb|EFH43577.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V
Sbjct: 130 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKV 189
Query: 388 MWM 390
+ M
Sbjct: 190 LSM 192
>gi|413937342|gb|AFW71893.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 489
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 57/74 (77%)
Query: 317 AGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIE 376
AGN + RR +A + H+++ER RR++I+++M+ LQEL+P+ N+TDKASMLDE IE
Sbjct: 289 AGNGAPKPRVRARRGQATDPHSIAERLRREKISDRMKNLQELVPNSNRTDKASMLDEIIE 348
Query: 377 YLKSLQLQLQVMWM 390
Y+K LQLQ++V+ M
Sbjct: 349 YVKFLQLQVKVLSM 362
>gi|242094954|ref|XP_002437967.1| hypothetical protein SORBIDRAFT_10g005650 [Sorghum bicolor]
gi|241916190|gb|EER89334.1| hypothetical protein SORBIDRAFT_10g005650 [Sorghum bicolor]
Length = 447
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 55/67 (82%), Gaps = 5/67 (7%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM-----G 391
H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 224 HSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 283
Query: 392 SGMAPLM 398
+GMAPL+
Sbjct: 284 AGMAPLV 290
>gi|449435746|ref|XP_004135655.1| PREDICTED: transcription factor UNE12-like [Cucumis sativus]
Length = 318
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P CNKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 159 ARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKV 218
Query: 388 MWM 390
+ M
Sbjct: 219 LSM 221
>gi|297817562|ref|XP_002876664.1| hypothetical protein ARALYDRAFT_907786 [Arabidopsis lyrata subsp.
lyrata]
gi|297322502|gb|EFH52923.1| hypothetical protein ARALYDRAFT_907786 [Arabidopsis lyrata subsp.
lyrata]
Length = 368
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 324 RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R +R R AE +N ER++R +N+KMR LQ+L+P+ ++ D SMLDEAI Y+K+LQL
Sbjct: 168 RKALVKRKRNAEAYNSPERKQRRDVNKKMRTLQDLLPNSHEDDNESMLDEAINYMKNLQL 227
Query: 384 QLQVMWMGSGMAP--LMFPGMQHYMSRMGMGMG 414
Q+Q+M MG+ +M P HY S+M + MG
Sbjct: 228 QVQMMTMGNRFVTPSMMLPLGLHY-SQMDLAMG 259
>gi|226495509|ref|NP_001152044.1| LOC100285681 [Zea mays]
gi|195652123|gb|ACG45529.1| BHLH transcription factor [Zea mays]
gi|413932798|gb|AFW67349.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 285
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 126 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKV 185
Query: 388 MWM 390
+ M
Sbjct: 186 LSM 188
>gi|242095026|ref|XP_002438003.1| hypothetical protein SORBIDRAFT_10g006250 [Sorghum bicolor]
gi|241916226|gb|EER89370.1| hypothetical protein SORBIDRAFT_10g006250 [Sorghum bicolor]
Length = 489
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 67/94 (71%), Gaps = 5/94 (5%)
Query: 303 DSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
D + Q +AG +G G K R+ RR +A + H+++ER RR++I+++M++LQ+L+P+
Sbjct: 302 DVQTQPNSAG--NGVGVKPRVRA---RRGQATDPHSIAERLRREKISDRMKSLQDLVPNS 356
Query: 363 NKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 396
NK DKASMLDE I+Y+K LQLQ++V+ M AP
Sbjct: 357 NKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAP 390
>gi|218202150|gb|EEC84577.1| hypothetical protein OsI_31377 [Oryza sativa Indica Group]
Length = 414
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 6/91 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++
Sbjct: 161 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK- 219
Query: 388 MWMGSGMAPLMFPGMQHYMSRMGMGMGPPPL 418
S L+ + MSR+G PL
Sbjct: 220 ---ASTYTKLLIHVLS--MSRLGGAAAVAPL 245
>gi|115455925|ref|NP_001051563.1| Os03g0797600 [Oryza sativa Japonica Group]
gi|31126765|gb|AAP44685.1| unknown protein [Oryza sativa Japonica Group]
gi|108711561|gb|ABF99356.1| Lipoamide dehydrogenase, putative, expressed [Oryza sativa Japonica
Group]
gi|113550034|dbj|BAF13477.1| Os03g0797600 [Oryza sativa Japonica Group]
gi|215737529|dbj|BAG96659.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218193907|gb|EEC76334.1| hypothetical protein OsI_13903 [Oryza sativa Indica Group]
Length = 294
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 135 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKV 194
Query: 388 MWM 390
+ M
Sbjct: 195 LSM 197
>gi|449530006|ref|XP_004171988.1| PREDICTED: transcription factor UNE12-like, partial [Cucumis
sativus]
Length = 219
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P CNKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 60 ARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKV 119
Query: 388 MWM 390
+ M
Sbjct: 120 LSM 122
>gi|224068580|ref|XP_002326150.1| predicted protein [Populus trichocarpa]
gi|222833343|gb|EEE71820.1| predicted protein [Populus trichocarpa]
Length = 456
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 5/88 (5%)
Query: 319 NKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYL 378
N T + RR A + H+++ER RR++I E+M+ LQEL+P+ NK DKASMLDE IEY+
Sbjct: 233 NGTGKTRVRARRGHATDPHSIAERLRREKIAERMKNLQELVPNSNKVDKASMLDEIIEYV 292
Query: 379 KSLQLQLQVMWM-----GSGMAPLMFPG 401
K LQLQ++V+ M + PL+ G
Sbjct: 293 KFLQLQVKVLSMSRLGAAGAVIPLLTDG 320
>gi|242084066|ref|XP_002442458.1| hypothetical protein SORBIDRAFT_08g020300 [Sorghum bicolor]
gi|241943151|gb|EES16296.1| hypothetical protein SORBIDRAFT_08g020300 [Sorghum bicolor]
Length = 340
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 325 SGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQ 384
+G RS E HNL+E+RRR +INE+++ LQ+L+P C+K+++AS LD+ I Y+KSLQ Q
Sbjct: 157 AGGSSRSHHGEAHNLTEKRRRHKINERLKTLQQLVPGCSKSNQASTLDQTIHYMKSLQHQ 216
Query: 385 LQVMWMGSGMAPLMFPGMQ 403
+Q M +G +P ++P +Q
Sbjct: 217 VQAMSVGLA-SPAVYPVVQ 234
>gi|222625964|gb|EEE60096.1| hypothetical protein OsJ_12958 [Oryza sativa Japonica Group]
Length = 294
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 135 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKV 194
Query: 388 MWM 390
+ M
Sbjct: 195 LSM 197
>gi|226496235|ref|NP_001140213.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
gi|194698524|gb|ACF83346.1| unknown [Zea mays]
gi|195636992|gb|ACG37964.1| BHLH transcription factor [Zea mays]
gi|414883773|tpg|DAA59787.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 285
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 118 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKV 177
Query: 388 MWM 390
+ M
Sbjct: 178 LSM 180
>gi|413968544|gb|AFW90609.1| basic helix-loop-helix protein BHLH3 [Solanum tuberosum]
Length = 303
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 54/63 (85%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI+E+++ALQEL+P CNKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 143 ARRGQATDPHSIAERLRRERISERIKALQELVPSCNKTDRAAMLDEILDYVKFLRLQVKV 202
Query: 388 MWM 390
+ M
Sbjct: 203 LSM 205
>gi|326498007|dbj|BAJ94866.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 481
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 315 SGAGNK-TAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
SG GN +A+ RR +A + H+++ER RR++I+E+M+ LQ+L+P+ NK DK+SMLDE
Sbjct: 308 SGNGNSASAKPRARARRGQATDPHSIAERLRREKISERMKNLQDLVPNSNKADKSSMLDE 367
Query: 374 AIEYLKSLQLQLQVMWMGSGMAP 396
I+Y+K LQLQ++V+ M AP
Sbjct: 368 IIDYVKFLQLQVKVLSMSRLGAP 390
>gi|77999289|gb|ABB16991.1| unknown [Solanum tuberosum]
Length = 304
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 54/63 (85%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI+E+++ALQEL+P CNKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 144 ARRGQATDPHSIAERLRRERISERIKALQELVPSCNKTDRAAMLDEILDYVKFLRLQVKV 203
Query: 388 MWM 390
+ M
Sbjct: 204 LSM 206
>gi|242047606|ref|XP_002461549.1| hypothetical protein SORBIDRAFT_02g004570 [Sorghum bicolor]
gi|241924926|gb|EER98070.1| hypothetical protein SORBIDRAFT_02g004570 [Sorghum bicolor]
Length = 277
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 117 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKV 176
Query: 388 MWM 390
+ M
Sbjct: 177 LSM 179
>gi|242037799|ref|XP_002466294.1| hypothetical protein SORBIDRAFT_01g005130 [Sorghum bicolor]
gi|241920148|gb|EER93292.1| hypothetical protein SORBIDRAFT_01g005130 [Sorghum bicolor]
Length = 283
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD+A MLDE ++Y+K L+LQ++V
Sbjct: 124 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAVMLDEILDYVKFLRLQVKV 183
Query: 388 MWM 390
+ M
Sbjct: 184 LSM 186
>gi|357124947|ref|XP_003564158.1| PREDICTED: uncharacterized protein LOC100841109 [Brachypodium
distachyon]
Length = 482
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 315 SGAGNKTAQRSGS-CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
S GN + + S RR +A + H+++ER RR++I+E+M+ LQEL+P+ NK DK+SMLDE
Sbjct: 309 SAHGNSVSAKPRSRARRGQATDPHSIAERLRREKISERMKNLQELVPNSNKADKSSMLDE 368
Query: 374 AIEYLKSLQLQLQVMWMGSGMAP 396
I+Y+K LQLQ++V+ M AP
Sbjct: 369 IIDYVKFLQLQVKVLSMSRLGAP 391
>gi|302764076|ref|XP_002965459.1| hypothetical protein SELMODRAFT_24892 [Selaginella moellendorffii]
gi|302825088|ref|XP_002994179.1| hypothetical protein SELMODRAFT_24890 [Selaginella moellendorffii]
gi|300137980|gb|EFJ04769.1| hypothetical protein SELMODRAFT_24890 [Selaginella moellendorffii]
gi|300166273|gb|EFJ32879.1| hypothetical protein SELMODRAFT_24892 [Selaginella moellendorffii]
Length = 143
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQ+L+P+ NKTDKASMLDE ++Y+K LQLQ++V
Sbjct: 6 ARRGQATDPHSIAERLRRERIAERMKALQDLVPNANKTDKASMLDEIVDYVKFLQLQVKV 65
Query: 388 MWM 390
+ M
Sbjct: 66 LSM 68
>gi|297734539|emb|CBI16590.3| unnamed protein product [Vitis vinifera]
Length = 211
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 58/76 (76%)
Query: 311 AGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASM 370
AG E T + S S +RSRAA +HN SER+RRD+IN++M+ LQ+L+P+ +KTDKASM
Sbjct: 7 AGDEEDKKRGTGKSSVSSKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASM 66
Query: 371 LDEAIEYLKSLQLQLQ 386
LDE IEYLK LQ Q+Q
Sbjct: 67 LDEVIEYLKQLQAQVQ 82
>gi|225898737|dbj|BAH30499.1| hypothetical protein [Arabidopsis thaliana]
Length = 363
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 324 RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R +R R AE +N ER +R+ IN+KMR LQ L+P+ +K D SMLDEAI Y+ +LQL
Sbjct: 180 RKALVKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQL 239
Query: 384 QLQVMWMGSGMAP--LMFPGMQHYMSRMGMGMG 414
Q+Q+M MG+ +M P +Y S+MG+ MG
Sbjct: 240 QVQMMTMGNRFVTPSMMMPLGPNY-SQMGLAMG 271
>gi|323388949|gb|ADX60279.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 294
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 52/61 (85%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 135 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKV 194
Query: 388 M 388
+
Sbjct: 195 L 195
>gi|357142621|ref|XP_003572635.1| PREDICTED: uncharacterized protein LOC100834217 [Brachypodium
distachyon]
Length = 479
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 8/94 (8%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR++I+++M+ LQEL+P+ NKTDKASML+E IEY+K LQLQ +V
Sbjct: 284 ARRGQATDPHSIAERLRREKISDRMKNLQELVPNSNKTDKASMLEEIIEYIKFLQLQTKV 343
Query: 388 MWMG-----SGMAPLMFPGMQHYMSRMGMGMGPP 416
+ M + PL+ M + G+ MG P
Sbjct: 344 LSMSRLGATDALVPLL---MDSHNESSGLVMGSP 374
>gi|42566136|ref|NP_191768.2| transcription factor PIF6 [Arabidopsis thaliana]
gi|193211499|gb|ACF16169.1| At3g62090 [Arabidopsis thaliana]
gi|332646785|gb|AEE80306.1| transcription factor PIF6 [Arabidopsis thaliana]
Length = 346
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 324 RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R +R R AE +N ER +R+ IN+KMR LQ L+P+ +K D SMLDEAI Y+ +LQL
Sbjct: 163 RKALVKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQL 222
Query: 384 QLQVMWMGSGMAP--LMFPGMQHYMSRMGMGMG 414
Q+Q+M MG+ +M P +Y S+MG+ MG
Sbjct: 223 QVQMMTMGNRFVTPSMMMPLGPNY-SQMGLAMG 254
>gi|414868827|tpg|DAA47384.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 339
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 55/75 (73%), Gaps = 4/75 (5%)
Query: 318 GNKTAQRS----GSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
GNK +++ GS RRS E HNL+E+RRR +INE+ + LQ+++P C+K+++AS LD+
Sbjct: 161 GNKEMRKAPAGGGSSRRSHHGEAHNLTEKRRRHKINERFKTLQQIVPGCSKSNQASTLDQ 220
Query: 374 AIEYLKSLQLQLQVM 388
I Y+KSLQ Q+Q M
Sbjct: 221 TIHYMKSLQHQVQAM 235
>gi|212724016|ref|NP_001131264.1| uncharacterized protein LOC100192577 [Zea mays]
gi|194691028|gb|ACF79598.1| unknown [Zea mays]
gi|323388613|gb|ADX60111.1| bHLH transcription factor [Zea mays]
Length = 438
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
S+ Q++ +G G K R+ RR +A + H+++ER RR++I+++M+ LQ+L+P+ N
Sbjct: 263 SDVQTQPNSAVNGVGVKPRVRA---RRGQATDPHSIAERLRREKISDRMKNLQDLVPNSN 319
Query: 364 KTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 396
K DKASMLDE I+Y+K LQLQ++V+ M AP
Sbjct: 320 KADKASMLDEIIDYVKFLQLQVKVLSMSRVGAP 352
>gi|414868828|tpg|DAA47385.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 327
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 50/63 (79%)
Query: 326 GSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL 385
GS RRS E HNL+E+RRR +INE+++ LQ+++P C+K+++AS LD+ I Y+KSLQ Q+
Sbjct: 170 GSSRRSHHGEAHNLTEKRRRHKINERLKTLQQIVPGCSKSNQASTLDQTIHYMKSLQHQV 229
Query: 386 QVM 388
Q M
Sbjct: 230 QAM 232
>gi|326533782|dbj|BAK05422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 362
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 50/59 (84%)
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
+A + H+++ER RR+RI E+M+ALQEL+P NKTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 170 QATDPHSIAERLRRERIAERMKALQELVPSANKTDKASMLDEIIDYVKFLQLQVKVLSM 228
>gi|413943961|gb|AFW76610.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 473
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
S+ Q++ +G G K R+ RR +A + H+++ER RR++I+++M+ LQ+L+P+ N
Sbjct: 298 SDVQTQPNSAVNGVGVKPRVRA---RRGQATDPHSIAERLRREKISDRMKNLQDLVPNSN 354
Query: 364 KTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 396
K DKASMLDE I+Y+K LQLQ++V+ M AP
Sbjct: 355 KADKASMLDEIIDYVKFLQLQVKVLSMSRVGAP 387
>gi|222641577|gb|EEE69709.1| hypothetical protein OsJ_29376 [Oryza sativa Japonica Group]
Length = 410
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 3/74 (4%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ+
Sbjct: 252 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVLS 311
Query: 388 MWM---GSGMAPLM 398
M + +APL+
Sbjct: 312 MSRLGGAAAVAPLV 325
>gi|225432880|ref|XP_002284047.1| PREDICTED: transcription factor UNE12 [Vitis vinifera]
gi|297737150|emb|CBI26351.3| unnamed protein product [Vitis vinifera]
Length = 313
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 153 ARRGQATDPHSIAERLRRERIAERMKALQELVPSSNKTDRAAMLDEIVDYVKFLRLQVKV 212
Query: 388 MWM 390
+ M
Sbjct: 213 LSM 215
>gi|125554388|gb|EAY99993.1| hypothetical protein OsI_21996 [Oryza sativa Indica Group]
Length = 477
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 54/69 (78%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR++I+E+M+ LQ+L+P+ NK DKASMLDE I+Y+K LQLQ++V
Sbjct: 317 ARRGQATDPHSIAERLRREKISERMKNLQDLVPNSNKADKASMLDEIIDYVKFLQLQVKV 376
Query: 388 MWMGSGMAP 396
+ M AP
Sbjct: 377 LSMSRLGAP 385
>gi|194396125|gb|ACF60480.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 478
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 14/134 (10%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR++I+E+M+ LQ L+P+ NK DKASMLDE I+Y+K LQLQ++V
Sbjct: 318 ARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKV 377
Query: 388 MWMGSGMAP-LMFPGMQH---------YMSRMGMGMGPPPLPSVTNPMHFSR--VPLVDQ 435
+ M AP + P ++ +S + GPP +P + F + V L++
Sbjct: 378 LSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMET 437
Query: 436 SM--SMAQAQNRAV 447
S+ +M QN+ +
Sbjct: 438 SIISAMQYLQNKGL 451
>gi|115466888|ref|NP_001057043.1| Os06g0193400 [Oryza sativa Japonica Group]
gi|51090797|dbj|BAD35275.1| bHLH transcription factor PTF1 [Oryza sativa Japonica Group]
gi|113595083|dbj|BAF18957.1| Os06g0193400 [Oryza sativa Japonica Group]
gi|125596339|gb|EAZ36119.1| hypothetical protein OsJ_20430 [Oryza sativa Japonica Group]
gi|215686762|dbj|BAG89612.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 478
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 14/134 (10%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR++I+E+M+ LQ L+P+ NK DKASMLDE I+Y+K LQLQ++V
Sbjct: 318 ARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKV 377
Query: 388 MWMGSGMAP-LMFPGMQH---------YMSRMGMGMGPPPLPSVTNPMHFSR--VPLVDQ 435
+ M AP + P ++ +S + GPP +P + F + V L++
Sbjct: 378 LSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMET 437
Query: 436 SM--SMAQAQNRAV 447
S+ +M QN+ +
Sbjct: 438 SIISAMQYLQNKGL 451
>gi|357119229|ref|XP_003561348.1| PREDICTED: transcription factor UNE12-like [Brachypodium
distachyon]
Length = 288
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 128 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKV 187
Query: 388 MWM 390
+ M
Sbjct: 188 LSM 190
>gi|145332927|ref|NP_001078329.1| transcription factor PIF6 [Arabidopsis thaliana]
gi|75301050|sp|Q8L5W7.1|PIF6_ARATH RecName: Full=Transcription factor PIF6; AltName: Full=Basic
helix-loop-helix protein 132; Short=AtbHLH132;
Short=bHLH 132; AltName: Full=Protein PHYTOCHROME
INTERACTING FACTOR 3-LIKE 2; AltName: Full=Protein
PHYTOCHROME-INTERACTING FACTOR 6; AltName:
Full=Transcription factor EN 111; AltName: Full=bHLH
transcription factor bHLH132
gi|22535494|dbj|BAC10690.1| PIF3 like basic Helix Loop Helix protein 2 [Arabidopsis thaliana]
gi|332646786|gb|AEE80307.1| transcription factor PIF6 [Arabidopsis thaliana]
Length = 363
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 324 RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R +R R AE +N ER +R+ IN+KMR LQ L+P+ +K D SMLDEAI Y+ +LQL
Sbjct: 180 RKALVKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQL 239
Query: 384 QLQVMWMGSGMAP--LMFPGMQHYMSRMGMGMG 414
Q+Q+M MG+ +M P +Y S+MG+ MG
Sbjct: 240 QVQMMTMGNRFVTPSMMMPLGPNY-SQMGLAMG 271
>gi|413937341|gb|AFW71892.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 425
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 55/71 (77%)
Query: 317 AGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIE 376
AGN + RR +A + H+++ER RR++I+++M+ LQEL+P+ N+TDKASMLDE IE
Sbjct: 289 AGNGAPKPRVRARRGQATDPHSIAERLRREKISDRMKNLQELVPNSNRTDKASMLDEIIE 348
Query: 377 YLKSLQLQLQV 387
Y+K LQLQ++V
Sbjct: 349 YVKFLQLQVKV 359
>gi|326506812|dbj|BAJ91447.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510963|dbj|BAJ91829.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 353
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 16/127 (12%)
Query: 315 SGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDE 373
+ AG KT RR +A + H+L+ER RR+RI+E+MR LQEL+P C+K T KA MLDE
Sbjct: 139 AAAGQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCDKVTGKAGMLDE 198
Query: 374 AIEYLKSLQLQLQVMWMGSGMA-PL--------MFPGMQHYMSRMGMGMGP-PPLPSVTN 423
I Y++SLQ Q++ + M A P+ +F G RM GP LP++T
Sbjct: 199 IINYVQSLQKQVEFLSMKIAAANPVVNFNIVDDLFGG-----RRMSQPCGPAAALPAMTL 253
Query: 424 PMHFSRV 430
PMH ++
Sbjct: 254 PMHHGQL 260
>gi|194696204|gb|ACF82186.1| unknown [Zea mays]
gi|414883772|tpg|DAA59786.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 193
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 26 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKV 85
Query: 388 MWM 390
+ M
Sbjct: 86 LSM 88
>gi|147771925|emb|CAN66761.1| hypothetical protein VITISV_032727 [Vitis vinifera]
Length = 337
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 177 ARRGQATDPHSIAERLRRERIAERMKALQELVPSSNKTDRAAMLDEIVDYVKFLRLQVKV 236
Query: 388 MWM 390
+ M
Sbjct: 237 LSM 239
>gi|242084068|ref|XP_002442459.1| hypothetical protein SORBIDRAFT_08g020320 [Sorghum bicolor]
gi|241943152|gb|EES16297.1| hypothetical protein SORBIDRAFT_08g020320 [Sorghum bicolor]
Length = 342
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 319 NKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYL 378
NK S RS E H L+E+RRR +INE+++ LQ+L+P C+K+++AS LD+ I Y+
Sbjct: 157 NKAPAGGPSSWRSHHGEAHKLTEKRRRHKINERLKTLQQLVPGCSKSNQASTLDQTIHYM 216
Query: 379 KSLQLQLQVMWMGSGMAPLMFPGMQ 403
KSLQ Q+Q M +G AP ++P +Q
Sbjct: 217 KSLQQQVQAMSVGLA-APAVYPIVQ 240
>gi|224123420|ref|XP_002319074.1| predicted protein [Populus trichocarpa]
gi|222857450|gb|EEE94997.1| predicted protein [Populus trichocarpa]
Length = 178
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR RI E+++ALQEL+P CNKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 18 ARRGQATDPHSIAERLRRVRITERVKALQELVPTCNKTDRAAMLDEIVDYVKFLRLQIKV 77
Query: 388 MWM 390
+ M
Sbjct: 78 LSM 80
>gi|51090798|dbj|BAD35276.1| putative bHLH transcription factor PTF1 [Oryza sativa Japonica
Group]
Length = 401
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 14/134 (10%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR++I+E+M+ LQ L+P+ NK DKASMLDE I+Y+K LQLQ++V
Sbjct: 241 ARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKV 300
Query: 388 MWMGSGMAP-LMFPGMQH---------YMSRMGMGMGPPPLPSVTNPMHFSR--VPLVDQ 435
+ M AP + P ++ +S + GPP +P + F + V L++
Sbjct: 301 LSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMET 360
Query: 436 SM--SMAQAQNRAV 447
S+ +M QN+ +
Sbjct: 361 SIISAMQYLQNKGL 374
>gi|413968542|gb|AFW90608.1| beta-fructofuranosidase protein [Solanum tuberosum]
Length = 298
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 55/63 (87%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI+E+++ALQEL+P+CNKTD+A+++DE ++Y+K L+LQ++V
Sbjct: 136 ARRGQATDPHSIAERLRRERISERIKALQELVPNCNKTDRAALVDEILDYVKFLRLQVKV 195
Query: 388 MWM 390
+ M
Sbjct: 196 LSM 198
>gi|195616290|gb|ACG29975.1| helix-loop-helix DNA-binding domain containing protein [Zea mays]
Length = 481
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 65/94 (69%), Gaps = 5/94 (5%)
Query: 303 DSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
D + Q + G +G G K R+ RR +A + H+++ER RR++I+++M+ LQ+L+P+
Sbjct: 302 DVQIQPNSVG--NGVGVKPRVRA---RRGQATDPHSIAERLRREKISDRMKNLQDLVPNS 356
Query: 363 NKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 396
NK DKASMLDE I+Y+K LQLQ++V+ M AP
Sbjct: 357 NKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAP 390
>gi|359487888|ref|XP_002274833.2| PREDICTED: transcription factor UNE12-like [Vitis vinifera]
Length = 331
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 171 ARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKV 230
Query: 388 MWM 390
+ M
Sbjct: 231 LSM 233
>gi|224131266|ref|XP_002328496.1| predicted protein [Populus trichocarpa]
gi|222838211|gb|EEE76576.1| predicted protein [Populus trichocarpa]
Length = 182
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR RI E+++ALQEL+P CNKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 22 ARRGQATDPHSIAERLRRVRITERVKALQELVPTCNKTDRAAMLDEIVDYVKFLRLQVKV 81
Query: 388 MWM 390
+ M
Sbjct: 82 LSM 84
>gi|125557459|gb|EAZ02995.1| hypothetical protein OsI_25136 [Oryza sativa Indica Group]
Length = 293
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQ+L+P+ NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 134 ARRGQATDPHSIAERLRRERIAERMRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKV 193
Query: 388 MWM 390
+ M
Sbjct: 194 LSM 196
>gi|162460249|ref|NP_001105867.1| bHLH transcription factor PTF1 [Zea mays]
gi|93359745|gb|ABF13333.1| bHLH transcription factor PTF1 [Zea mays]
Length = 481
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 65/94 (69%), Gaps = 5/94 (5%)
Query: 303 DSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
D + Q + G +G G K R+ RR +A + H+++ER RR++I+++M+ LQ+L+P+
Sbjct: 302 DVQIQPNSVG--NGVGVKPRVRA---RRGQATDPHSIAERLRREKISDRMKNLQDLVPNS 356
Query: 363 NKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 396
NK DKASMLDE I+Y+K LQLQ++V+ M AP
Sbjct: 357 NKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAP 390
>gi|115345831|gb|ABI95371.1| PTF1 [Triticum aestivum]
Length = 480
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 315 SGAGNK-TAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
S GN +A+ RR +A + H+++ER RR++I+E+M+ LQ+L+P+ NK DK+SMLDE
Sbjct: 307 SANGNSASAKPRARARRGQATDPHSIAERLRREKISERMKNLQDLVPNSNKADKSSMLDE 366
Query: 374 AIEYLKSLQLQLQVMWMGSGMAP 396
I+Y+K LQLQ++V+ M AP
Sbjct: 367 IIDYVKFLQLQVKVLCMSRLGAP 389
>gi|414864922|tpg|DAA43479.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 423
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 299 RDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQEL 358
R D EC+ ES K QR+G RR+RAAEVHNLSERRRRDRI EKMR LQEL
Sbjct: 360 RKLQDVECE------ESTEETKPWQRNGPKRRTRAAEVHNLSERRRRDRIKEKMRVLQEL 413
Query: 359 IPHCNKT 365
IPHCNK
Sbjct: 414 IPHCNKV 420
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 13 DIPISNQMKP-MGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGS 71
D S Q +P D++LVELLW NG VV QA H+ P + G
Sbjct: 149 DCACSLQWRPHRSPDDDLVELLWHNGSVVAQPQA---------HHRPAPPSDRDPLG--- 196
Query: 72 CGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLF 105
+N I +ET +W ++D EKD Y+QL+
Sbjct: 197 ----TNDITAEETAAWFPDTLDDPLEKDLYTQLW 226
>gi|222636553|gb|EEE66685.1| hypothetical protein OsJ_23336 [Oryza sativa Japonica Group]
Length = 342
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQ+L+P+ NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 183 ARRGQATDPHSIAERLRRERIAERMRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKV 242
Query: 388 MWM 390
+ M
Sbjct: 243 LSM 245
>gi|46390356|dbj|BAD15821.1| putative bHLH transcription factor PTF1 [Oryza sativa Japonica
Group]
gi|215768923|dbj|BAH01152.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623080|gb|EEE57212.1| hypothetical protein OsJ_07173 [Oryza sativa Japonica Group]
Length = 524
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR++I+++M+ LQEL+P+ NKT+KASMLDE I+Y+K LQLQ++V
Sbjct: 316 ARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASMLDEIIDYVKFLQLQVKV 375
Query: 388 MWM 390
+ M
Sbjct: 376 LSM 378
>gi|125539931|gb|EAY86326.1| hypothetical protein OsI_07700 [Oryza sativa Indica Group]
Length = 524
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 53/63 (84%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR++I+++M+ LQEL+P+ NKT+KASMLDE I+Y+K LQLQ++V
Sbjct: 316 ARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASMLDEIIDYVKFLQLQVKV 375
Query: 388 MWM 390
+ M
Sbjct: 376 LSM 378
>gi|29424047|gb|AAO73566.1| bHLH transcription factor PTF1 [Oryza sativa]
Length = 478
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 53/69 (76%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR++I+E+M+ LQ L+P+ NK DKASMLDE I+Y+K LQLQ++V
Sbjct: 318 ARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKV 377
Query: 388 MWMGSGMAP 396
+ M AP
Sbjct: 378 LSMSRLGAP 386
>gi|242049278|ref|XP_002462383.1| hypothetical protein SORBIDRAFT_02g024750 [Sorghum bicolor]
gi|241925760|gb|EER98904.1| hypothetical protein SORBIDRAFT_02g024750 [Sorghum bicolor]
Length = 466
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 49/59 (83%)
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
R +A + H+++ER RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ+ M
Sbjct: 243 RGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVLSM 301
>gi|356576702|ref|XP_003556469.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 331
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 171 ARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKV 230
Query: 388 MWM 390
+ M
Sbjct: 231 LSM 233
>gi|223702396|gb|ACN21629.1| putative basic helix-loop-helix protein BHLH2 [Lotus japonicus]
gi|388506732|gb|AFK41432.1| unknown [Lotus japonicus]
Length = 342
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+MRALQEL+P NK+D+A+MLDE ++Y+K L+LQ++V
Sbjct: 182 ARRGQATDPHSIAERLRRERIAERMRALQELVPSINKSDRAAMLDEIVDYVKFLRLQVKV 241
Query: 388 MWM 390
+ M
Sbjct: 242 LSM 244
>gi|298204851|emb|CBI34158.3| unnamed protein product [Vitis vinifera]
Length = 261
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 101 ARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKV 160
Query: 388 MWM 390
+ M
Sbjct: 161 LSM 163
>gi|302801892|ref|XP_002982702.1| hypothetical protein SELMODRAFT_422025 [Selaginella moellendorffii]
gi|300149801|gb|EFJ16455.1| hypothetical protein SELMODRAFT_422025 [Selaginella moellendorffii]
Length = 443
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 51/59 (86%)
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
+A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 265 QATDPHSIAERLRRERIAERMKSLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSM 323
>gi|414885459|tpg|DAA61473.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 344
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 49/61 (80%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+ + NKTDKASMLDE I+Y+K LQLQ+
Sbjct: 147 ARRGQATDPHSIAERLRRERIAERMKALQELVSNANKTDKASMLDEIIDYVKFLQLQVLS 206
Query: 388 M 388
M
Sbjct: 207 M 207
>gi|356535169|ref|XP_003536121.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 328
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 168 ARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKV 227
Query: 388 MWM 390
+ M
Sbjct: 228 LSM 230
>gi|414885458|tpg|DAA61472.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 316
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 49/61 (80%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+ + NKTDKASMLDE I+Y+K LQLQ+
Sbjct: 119 ARRGQATDPHSIAERLRRERIAERMKALQELVSNANKTDKASMLDEIIDYVKFLQLQVLS 178
Query: 388 M 388
M
Sbjct: 179 M 179
>gi|302798949|ref|XP_002981234.1| hypothetical protein SELMODRAFT_444782 [Selaginella moellendorffii]
gi|300151288|gb|EFJ17935.1| hypothetical protein SELMODRAFT_444782 [Selaginella moellendorffii]
Length = 443
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 51/59 (86%)
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
+A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 265 QATDPHSIAERLRRERIAERMKSLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSM 323
>gi|255580949|ref|XP_002531293.1| conserved hypothetical protein [Ricinus communis]
gi|223529126|gb|EEF31106.1| conserved hypothetical protein [Ricinus communis]
Length = 326
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 52/63 (82%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E+M+ALQEL+P NKTD+A+M+DE ++Y+K L+LQ++V
Sbjct: 165 ARRGQATDPHSIAERLRRERIAERMKALQELVPTANKTDRAAMIDEIVDYVKFLRLQVKV 224
Query: 388 MWM 390
+ M
Sbjct: 225 LSM 227
>gi|225445889|ref|XP_002276403.1| PREDICTED: uncharacterized protein LOC100243222 [Vitis vinifera]
Length = 519
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 7/84 (8%)
Query: 307 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-- 364
Q+ A G GA + QR RR +A + H+++ER RR+RI E+M+ALQEL+P+ NK
Sbjct: 267 QTPATGSAGGAPAQPRQRV-RARRGQATDPHSIAERLRRERIAERMKALQELVPNANKVI 325
Query: 365 ----TDKASMLDEAIEYLKSLQLQ 384
TDKASMLDE I+Y+K LQLQ
Sbjct: 326 HPTLTDKASMLDEIIDYVKFLQLQ 349
>gi|255550301|ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
gi|223544687|gb|EEF46203.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
Length = 592
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 319 NKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYL 378
N T + RR +A + H+++ER RR++I E+M+ LQEL+P+ +K DKASMLDE IEY+
Sbjct: 344 NGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSSKVDKASMLDEIIEYV 403
Query: 379 KSLQLQLQVMWM 390
K LQLQ++V+ M
Sbjct: 404 KFLQLQVKVLSM 415
>gi|414872419|tpg|DAA50976.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 316
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
Query: 303 DSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
D EC+ E+ K QR+G RR+RAAEVHNLSERRRRDRI EKM LQELIPHC
Sbjct: 257 DVECK------EANEETKPWQRNGPKRRTRAAEVHNLSERRRRDRIKEKMLVLQELIPHC 310
Query: 363 NKT 365
NK
Sbjct: 311 NKV 313
>gi|125664136|gb|ABN51065.1| basic helix-loop-helix protein [Sesamum indicum]
Length = 400
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 5/95 (5%)
Query: 297 KSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQ 356
+SR AV E + ++G E+ N R +R +A H+L+ER RR+RI+E+MR LQ
Sbjct: 209 RSRQAV-KEAKDNSSGAEASKENYIHVR---AKRGQATNSHSLAERVRRERISERMRLLQ 264
Query: 357 ELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
EL+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 265 ELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM 299
>gi|194688984|gb|ACF78576.1| unknown [Zea mays]
gi|238014612|gb|ACR38341.1| unknown [Zea mays]
gi|413952840|gb|AFW85489.1| pi starvation-induced transcription factor1 [Zea mays]
Length = 481
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 65/94 (69%), Gaps = 5/94 (5%)
Query: 303 DSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
D + Q + G +G G K R+ RR +A + H+++ER RR++I+++M+ LQ+L+P+
Sbjct: 302 DVQIQPNSVG--NGVGVKPRVRA---RRGQATDPHSIAERLRREKISDRMKNLQDLVPNS 356
Query: 363 NKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 396
NK DKASMLDE I+++K LQLQ++V+ M AP
Sbjct: 357 NKADKASMLDEIIDHVKFLQLQVKVLSMSRLGAP 390
>gi|222635086|gb|EEE65218.1| hypothetical protein OsJ_20364 [Oryza sativa Japonica Group]
Length = 352
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 51/63 (80%), Gaps = 5/63 (7%)
Query: 341 ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM-----GSGMA 395
+R RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M +GMA
Sbjct: 151 QRLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAGMA 210
Query: 396 PLM 398
PL+
Sbjct: 211 PLV 213
>gi|26185713|emb|CAD58595.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 175
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 91/171 (53%), Gaps = 22/171 (12%)
Query: 345 RDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFP--GM 402
R+RINE+M+ LQEL+P C KTDK SML++ IEY+KSLQLQ+Q+M MG GM P M
Sbjct: 1 RERINERMKTLQELLPRCRKTDKVSMLEDVIEYVKSLQLQIQMMSMGHGMMPPMMHEGNT 60
Query: 403 QHYMSRMGMGMG----PPPL-----PSVTNPMHFSRV----PLVDQSMSMAQAQNRAVMC 449
Q +M M MGM PPP + P H + V P + QA + + +
Sbjct: 61 QQFMPHMAMGMKGMNRPPPFVPFPGKTFPRPGHMAGVGPSYPALRYPFPDTQASDLSRVH 120
Query: 450 QASVL-NPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQ 499
S+ NPV NQ + + Y++++G H MQ P+ G PT Q
Sbjct: 121 VPSLHSNPVP--NQPRFPAYINPYSQFVGLHQMQQPPLPLQ----GQPTSQ 165
>gi|242050734|ref|XP_002463111.1| hypothetical protein SORBIDRAFT_02g037990 [Sorghum bicolor]
gi|241926488|gb|EER99632.1| hypothetical protein SORBIDRAFT_02g037990 [Sorghum bicolor]
Length = 282
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 8/104 (7%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
S C SE FE + T + R A + +L R+RR+RINE++R LQ+L+P+
Sbjct: 168 SSCTSEDGNFEGNTNSSTKKAYTRASRGAATDPQSLYARKRRERINERLRILQKLVPNGT 227
Query: 364 KTDKASMLDEAIEYLKSLQLQLQVM-----WMGSGMAPLMFPGM 402
K D ++ML+EA +Y+K LQLQ++++ WM AP+ + G+
Sbjct: 228 KVDISTMLEEAAQYVKFLQLQIKLLSSDDTWM---YAPIAYNGI 268
>gi|357480671|ref|XP_003610621.1| Transcription factor bHLH85 [Medicago truncatula]
gi|355511956|gb|AES93579.1| Transcription factor bHLH85 [Medicago truncatula]
Length = 331
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 17/118 (14%)
Query: 322 AQRSGSCRRSR--AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLK 379
A+ SG R SR A + +L R+RR+RINE+++ LQ L+P+ K D ++ML+EA++Y+K
Sbjct: 218 AKLSGKSRSSRGPATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVK 277
Query: 380 SLQLQLQVM-----WMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPL 432
LQLQ++++ WM S P+ + GM +G+ +G P VT MH + +P+
Sbjct: 278 FLQLQIKLLSSDDTWMYS---PIAYNGMN-----IGLELGITP-TKVTKDMH-NNIPI 325
>gi|115448177|ref|NP_001047868.1| Os02g0705500 [Oryza sativa Japonica Group]
gi|41053096|dbj|BAD08039.1| putative bHLH transcription factor [Oryza sativa Japonica Group]
gi|113537399|dbj|BAF09782.1| Os02g0705500 [Oryza sativa Japonica Group]
gi|215767339|dbj|BAG99567.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 361
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 317 AGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAI 375
AG KT RR +A + H+L+ER RR+RI+E+MR LQEL+P CNK T KA MLDE I
Sbjct: 155 AGQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEII 214
Query: 376 EYLKSLQLQLQVMWM 390
Y++SLQ Q++ + M
Sbjct: 215 NYVQSLQKQVEFLSM 229
>gi|218191430|gb|EEC73857.1| hypothetical protein OsI_08622 [Oryza sativa Indica Group]
Length = 361
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 317 AGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAI 375
AG KT RR +A + H+L+ER RR+RI+E+MR LQEL+P CNK T KA MLDE I
Sbjct: 155 AGQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEII 214
Query: 376 EYLKSLQLQLQVMWM 390
Y++SLQ Q++ + M
Sbjct: 215 NYVQSLQKQVEFLSM 229
>gi|297722389|ref|NP_001173558.1| Os03g0639300 [Oryza sativa Japonica Group]
gi|50540712|gb|AAT77869.1| expressed protein [Oryza sativa Japonica Group]
gi|255674735|dbj|BAH92286.1| Os03g0639300 [Oryza sativa Japonica Group]
Length = 307
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 127/336 (37%), Gaps = 69/336 (20%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDW+ GD + +G+D+ L+ELLW NGHVV+ SQ ++ P PR
Sbjct: 1 MNQFVPDWSNMGDA-----SRTLGEDDNLIELLWCNGHVVMQSQNHHRKLP------PRP 49
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLF---SELPPSGPMEVD 117
+K ++ +Q+DE W + DS EKD +S LF +
Sbjct: 50 PEKA----------AAAAVQEDEAGLWFPFALADSLEKDIFSDLFYEAPVAATAEAAPAG 99
Query: 118 KHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPP--------RFEVHDAA 169
E K K D A P E R MPPP R + A
Sbjct: 100 PGAGADGEGKTCKGDAAMAEEERGGPG----AASEAPRELMPPPKSTNASCSRQQTMSLA 155
Query: 170 PQNKNLGDLGKLVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCG 229
N GDL +LV +S+ G RK G + +GSS CG
Sbjct: 156 DGGDNAGDLSELVRARRSSG----------GAARRKAEAGGGGGGASSSMLSAIGSSICG 205
Query: 230 SNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETI------------EPTVTSSSGGS 277
SNQV + AS G R+ PS G I TV SSSG S
Sbjct: 206 SNQV--QVQQRTASEPG-----RRGAPPSAVGSANAIPCGGRDHGHGHEATTVASSSGRS 258
Query: 278 GSSFN---RTSKQSTGDNSLKRKSRDAV-DSECQSE 309
F T ST + S KRK D DSE SE
Sbjct: 259 NCCFGTTTTTEPTSTSNRSSKRKRLDTTEDSESPSE 294
>gi|414590707|tpg|DAA41278.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 286
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 8/104 (7%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
S C SE FE + + + R A E +L R+RR+RINE++R LQ L+P+
Sbjct: 172 SSCTSEDGNFEGNTNSSSKKTCARASRGAATEPQSLYARKRRERINERLRILQNLVPNGT 231
Query: 364 KTDKASMLDEAIEYLKSLQLQLQVM-----WMGSGMAPLMFPGM 402
K D ++ML+EA +Y+K LQLQ++++ WM AP+ + G+
Sbjct: 232 KVDISTMLEEAAQYVKFLQLQIKLLSCDDTWM---YAPIAYNGI 272
>gi|297726953|ref|NP_001175840.1| Os09g0417400 [Oryza sativa Japonica Group]
gi|50253024|dbj|BAD29274.1| bHLH transcription factor PTF1-like protein [Oryza sativa Japonica
Group]
gi|255678901|dbj|BAH94568.1| Os09g0417400 [Oryza sativa Japonica Group]
Length = 499
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 61/94 (64%), Gaps = 9/94 (9%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK---TDKASMLDEAIEYLKSLQLQ 384
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NK TDKASMLDE I+Y+K LQLQ
Sbjct: 252 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQLQ 311
Query: 385 LQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPL 418
++ S L+ + MSR+G PL
Sbjct: 312 VK----ASTYTKLLIHVLS--MSRLGGAAAVAPL 339
>gi|357153670|ref|XP_003576528.1| PREDICTED: uncharacterized protein LOC100826168 [Brachypodium
distachyon]
Length = 458
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 3/63 (4%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK---TDKASMLDEAIEYLKSLQLQ 384
RR +A + H+++ER RR+RI E+M+ALQEL+P+ NK TDKASMLDE I+Y+K LQLQ
Sbjct: 240 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKWMQTDKASMLDEIIDYVKFLQLQ 299
Query: 385 LQV 387
++
Sbjct: 300 VKA 302
>gi|222623520|gb|EEE57652.1| hypothetical protein OsJ_08085 [Oryza sativa Japonica Group]
Length = 300
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 317 AGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAI 375
AG KT RR +A + H+L+ER RR+RI+E+MR LQEL+P CNK T KA MLDE I
Sbjct: 155 AGQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEII 214
Query: 376 EYLKSLQLQLQVMWM 390
Y++SLQ Q++ + M
Sbjct: 215 NYVQSLQKQVEFLSM 229
>gi|125558995|gb|EAZ04531.1| hypothetical protein OsI_26681 [Oryza sativa Indica Group]
Length = 279
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 8/104 (7%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
S C SE E A + + R A + +L R+RR+RINE++R LQ L+P+
Sbjct: 165 SSCTSEEGNLEGNAKPSSKKMGTRANRGAATDPQSLYARKRRERINERLRILQNLVPNGT 224
Query: 364 KTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
K D ++ML+EA++Y+K LQLQ+++ MWM AP+ + G+
Sbjct: 225 KVDISTMLEEAVQYVKFLQLQIKLLSSDDMWM---YAPIAYNGV 265
>gi|449438623|ref|XP_004137087.1| PREDICTED: transcription factor bHLH85-like [Cucumis sativus]
gi|449495759|ref|XP_004159936.1| PREDICTED: transcription factor bHLH85-like [Cucumis sativus]
Length = 279
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 15/134 (11%)
Query: 279 SSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAA---- 334
SS N T + G+ L R+S SE +S A+ ++G N + +SRA+
Sbjct: 134 SSTNTT--EEDGNAGLSRQSTSTYCSEDESNASLDQNGGANNSRSSLNGANKSRASRGSA 191
Query: 335 -EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----M 388
+ +L R+RR+RINE++R LQ L+P+ K D ++ML+EA++Y+K LQLQ+++ +
Sbjct: 192 TDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDL 251
Query: 389 WMGSGMAPLMFPGM 402
WM AP+ + GM
Sbjct: 252 WM---YAPIAYNGM 262
>gi|363808336|ref|NP_001242250.1| transcription factor bHLH48-like [Glycine max]
gi|256002927|gb|ACU52707.1| bHLH transcription factor PTF1 [Glycine max]
Length = 366
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
S+ + AA SG G K RR +A + H+L+ER RR++IN +M+ LQEL+P C+
Sbjct: 178 SKKRKSAADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCD 237
Query: 364 KTDKASM-LDEAIEYLKSLQLQLQVMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSV 421
K +M LDE I +++SLQ Q++++ M + + P + + ++ G + LPS+
Sbjct: 238 KISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDNNLPSM 297
Query: 422 TNPMHFSRVPL 432
P+ + +PL
Sbjct: 298 VTPLMWPEIPL 308
>gi|224103739|ref|XP_002313175.1| predicted protein [Populus trichocarpa]
gi|222849583|gb|EEE87130.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 10/95 (10%)
Query: 315 SGAGNKTAQRSGSCRRSRAAEV--HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLD 372
S G T SG R SR A +L R+RR+RINE++R LQ L+P+ K D ++ML+
Sbjct: 251 SSKGTATLNSSGKTRASRGAATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLE 310
Query: 373 EAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
EA++Y+K LQLQ+++ +WM AP+ + GM
Sbjct: 311 EAVQYVKFLQLQIKLLSSEDLWM---YAPIAYNGM 342
>gi|356504821|ref|XP_003521193.1| PREDICTED: transcription factor bHLH48-like [Glycine max]
Length = 372
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 10/176 (5%)
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDN---SLKRKSRD-----AVDSECQSEAAGFESGAG 318
EP T S+ S S S + +N + KRK R+ S+ A SG G
Sbjct: 139 EPQETDSNPCSSSRLGCISDPAVENNNQRTAKRKEREKKLTVKGSSKKSKSIADETSGDG 198
Query: 319 NKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASM-LDEAIEY 377
K RR +A + H+L+ER RR++IN +M+ LQEL+P C+K +M LDE I +
Sbjct: 199 EKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINH 258
Query: 378 LKSLQLQLQVMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPL 432
++SLQ Q++++ M + + P + + ++ G + LPS+ P+ + +PL
Sbjct: 259 VQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDNNLPSMVTPLMWPEIPL 314
>gi|297851058|ref|XP_002893410.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297339252|gb|EFH69669.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 347
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 270 VTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCR 329
VTSS G + R K G+ +K + +S + ++ K R
Sbjct: 112 VTSSKGFNSKKRKRIGKDCEGEEDKMQKDEQSSNSNVNKTNSEKQASDSLKDGYIHMRAR 171
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVM 388
R +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++ +
Sbjct: 172 RGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFL 231
Query: 389 WMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLP 419
M S + P++ ++ +++ + P P
Sbjct: 232 SMKLSAVNPVLDFNLESLLAKDALQSSAPTFP 263
>gi|357137204|ref|XP_003570191.1| PREDICTED: uncharacterized protein LOC100822236 [Brachypodium
distachyon]
Length = 361
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 6/96 (6%)
Query: 296 RKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRAL 355
RK D + AAG G KT RR +A + H+L+ER RR+RI+E+MR L
Sbjct: 136 RKKGDVAAQKQDPRAAG-----GQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYL 190
Query: 356 QELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
QEL+P C+K T KA MLDE I Y++SLQ Q++ + M
Sbjct: 191 QELVPGCDKVTGKAGMLDEIINYVQSLQKQVEFLSM 226
>gi|449450552|ref|XP_004143026.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
gi|449522833|ref|XP_004168430.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 329
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 13/109 (11%)
Query: 309 EAAGFESGA-GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDK 367
EA G SGA + R R A + +L R+RR+RINE++R LQ+L+P+ K D
Sbjct: 219 EANGGGSGATSDGGVNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDI 278
Query: 368 ASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM----QHYMS 407
++ML+EA+ Y+K LQLQ+++ MWM APL + GM QH +S
Sbjct: 279 STMLEEAVHYVKFLQLQIKLLSSDEMWM---FAPLAYNGMDIGLQHNLS 324
>gi|356577684|ref|XP_003556954.1| PREDICTED: transcription factor bHLH74-like [Glycine max]
Length = 435
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 271 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 330
Query: 387 VMWM 390
+ M
Sbjct: 331 FLSM 334
>gi|42568685|ref|NP_200935.2| transcription factor PIF7 [Arabidopsis thaliana]
gi|182676517|sp|Q570R7.2|PIF7_ARATH RecName: Full=Transcription factor PIF7; AltName: Full=Basic
helix-loop-helix protein 72; Short=AtbHLH72; Short=bHLH
72; AltName: Full=Phytochrome-interacting factor 7;
AltName: Full=Transcription factor EN 109; AltName:
Full=bHLH transcription factor bHLH072
gi|225879146|dbj|BAH30643.1| hypothetical protein [Arabidopsis thaliana]
gi|332010062|gb|AED97445.1| transcription factor PIF7 [Arabidopsis thaliana]
Length = 366
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 15/141 (10%)
Query: 269 TVTSSSGGSGSSF-----NRTSKQS-TGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTA 322
+VT+S+ G+ S+ R+ K + TGD R + D+E + E+G N
Sbjct: 105 SVTASASGTNMSWASFESGRSLKTARTGDRDYFRSGSETQDTEGDEQETRGEAGRSN--- 161
Query: 323 QRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
RR RAA +HN SERRRRDRIN++MR LQ+L+P +K DK S+LD+ IE+LK LQ
Sbjct: 162 -----GRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQ 216
Query: 383 LQLQVMWMGSGM-APLMFPGM 402
Q+Q M + + + +M P +
Sbjct: 217 AQVQFMSLRANLPQQMMIPQL 237
>gi|34393609|dbj|BAC83262.1| transcription factor (bHLH)-like protein [Oryza sativa Japonica
Group]
gi|50509377|dbj|BAD30932.1| transcription factor (bHLH)-like protein [Oryza sativa Japonica
Group]
gi|125600907|gb|EAZ40483.1| hypothetical protein OsJ_24937 [Oryza sativa Japonica Group]
Length = 279
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 8/104 (7%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
S C SE E A + + R A + +L R+RR+RINE++R LQ L+P+
Sbjct: 165 SSCTSEEGNLEGNAKPSSKKMGTRANRGAATDPQSLYARKRRERINERLRILQNLVPNGT 224
Query: 364 KTDKASMLDEAIEYLKSLQLQLQVM-----WMGSGMAPLMFPGM 402
K D ++ML+EA++Y+K LQLQ++++ WM AP+ + G+
Sbjct: 225 KVDISTMLEEAVQYVKFLQLQIKLLSSDDTWM---YAPIAYNGV 265
>gi|413938470|gb|AFW73021.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 340
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIE 376
G KT RR +A + H+L+ER RR+RI+E+MR LQEL+P C+K T KA MLDE I
Sbjct: 138 GQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIIN 197
Query: 377 YLKSLQLQLQVMWM 390
Y++SLQ Q++ + M
Sbjct: 198 YVQSLQKQVEFLSM 211
>gi|62318640|dbj|BAD95106.1| bHLH transcription factor like protein [Arabidopsis thaliana]
Length = 278
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 15/141 (10%)
Query: 269 TVTSSSGGSGSSF-----NRTSKQS-TGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTA 322
+VT+S+ G+ S+ R+ K + TGD R + D+E + E+G N
Sbjct: 17 SVTASASGTNMSWASFESGRSLKTARTGDRDYFRSGSETQDTEGDEQETRGEAGRSN--- 73
Query: 323 QRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
RR RAA +HN SERRRRDRIN++MR LQ+L+P +K DK S+LD+ IE+LK LQ
Sbjct: 74 -----GRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQ 128
Query: 383 LQLQVMWMGSGM-APLMFPGM 402
Q+Q M + + + +M P +
Sbjct: 129 AQVQFMSLRANLPQQMMIPQL 149
>gi|115461581|ref|NP_001054390.1| Os05g0103000 [Oryza sativa Japonica Group]
gi|57863903|gb|AAW56931.1| unknown protein [Oryza sativa Japonica Group]
gi|57863910|gb|AAS88824.2| unknown protein [Oryza sativa Japonica Group]
gi|113577941|dbj|BAF16304.1| Os05g0103000 [Oryza sativa Japonica Group]
gi|215686863|dbj|BAG89713.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629873|gb|EEE62005.1| hypothetical protein OsJ_16787 [Oryza sativa Japonica Group]
gi|323388921|gb|ADX60265.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 339
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 71/111 (63%), Gaps = 15/111 (13%)
Query: 291 DNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINE 350
D+ +K+K++ EAAG E AG + RR +A + H+L+ER RR++I+E
Sbjct: 158 DDDVKKKAK---------EAAGGEPPAGYIHVR----ARRGQATDSHSLAERVRREKISE 204
Query: 351 KMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF 399
+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++ + M + ++PLM+
Sbjct: 205 RMKMLQSLVPGCDKVTGKALMLDEIISYVQSLQNQVEFLSMKLASLSPLMY 255
>gi|79331774|ref|NP_001032117.1| transcription factor PIF7 [Arabidopsis thaliana]
gi|9757848|dbj|BAB08482.1| unnamed protein product [Arabidopsis thaliana]
gi|45935023|gb|AAS79546.1| At5g61270 [Arabidopsis thaliana]
gi|46367462|emb|CAG25857.1| hypothetical protein [Arabidopsis thaliana]
gi|332010063|gb|AED97446.1| transcription factor PIF7 [Arabidopsis thaliana]
Length = 278
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 15/141 (10%)
Query: 269 TVTSSSGGSGSSF-----NRTSKQS-TGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTA 322
+VT+S+ G+ S+ R+ K + TGD R + D+E + E+G N
Sbjct: 17 SVTASASGTNMSWASFESGRSLKTARTGDRDYFRSGSETQDTEGDEQETRGEAGRSN--- 73
Query: 323 QRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
RR RAA +HN SERRRRDRIN++MR LQ+L+P +K DK S+LD+ IE+LK LQ
Sbjct: 74 -----GRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQ 128
Query: 383 LQLQVMWMGSGM-APLMFPGM 402
Q+Q M + + + +M P +
Sbjct: 129 AQVQFMSLRANLPQQMMIPQL 149
>gi|32527639|gb|AAP86213.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 277
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 15/141 (10%)
Query: 269 TVTSSSGGSGSSF-----NRTSKQS-TGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTA 322
+VT+S+ G+ S+ R+ K + TGD R + D+E + E+G N
Sbjct: 17 SVTASASGTNMSWASFESGRSLKTARTGDRDYFRSGSETQDTEGDEQETRGEAGRSN--- 73
Query: 323 QRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
RR RAA +HN SERRRRDRIN++MR LQ+L+P +K DK S+LD+ IE+LK LQ
Sbjct: 74 -----GRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQ 128
Query: 383 LQLQVMWMGSGM-APLMFPGM 402
Q+Q M + + + +M P +
Sbjct: 129 AQVQFMSLRANLPQQMMIPQL 149
>gi|414887375|tpg|DAA63389.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 472
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 14/105 (13%)
Query: 306 CQSEAAGFESGAGNKTAQRSGSCRRSR---AAEVHNLSERRRRDRINEKMRALQELIPHC 362
C SE FE GN + +C R+ A + +L R+RR+RINE++R LQ L+P+
Sbjct: 176 CTSEEGNFE---GNTYSSAKKTCTRASRGGATDPQSLYARKRRERINERLRILQNLVPNG 232
Query: 363 NKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
K D ++ML+EA +Y+K LQLQ+++ MWM AP+ + G+
Sbjct: 233 TKVDISTMLEEAAQYVKFLQLQIKLLSSDDMWM---YAPIAYNGI 274
>gi|356552284|ref|XP_003544498.1| PREDICTED: transcription factor bHLH74-like [Glycine max]
Length = 429
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 265 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 324
Query: 387 VMWM 390
+ M
Sbjct: 325 FLSM 328
>gi|224108413|ref|XP_002314839.1| predicted protein [Populus trichocarpa]
gi|222863879|gb|EEF01010.1| predicted protein [Populus trichocarpa]
Length = 103
Score = 75.9 bits (185), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/60 (60%), Positives = 53/60 (88%), Gaps = 2/60 (3%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+R+R+AE+HN+S R RDRI K+RALQELIP+C+K D+ SML++A+EYLK+L+LQ++V+
Sbjct: 20 KRTRSAEMHNVS--RPRDRIKGKLRALQELIPNCHKQDRPSMLEDAVEYLKALKLQVEVI 77
>gi|79318615|ref|NP_001031093.1| transcription factor bHLH76 [Arabidopsis thaliana]
gi|45935021|gb|AAS79545.1| putative transcription factor [Arabidopsis thaliana]
gi|46367460|emb|CAG25856.1| hypothetical protein [Arabidopsis thaliana]
gi|332192548|gb|AEE30669.1| transcription factor bHLH76 [Arabidopsis thaliana]
Length = 339
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 18/165 (10%)
Query: 273 SSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS----- 327
SSGG+G + + S+ S K++ R D E + + + + A ++ S
Sbjct: 103 SSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPS 162
Query: 328 -----------CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAI 375
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I
Sbjct: 163 DSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEII 222
Query: 376 EYLKSLQLQLQVMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLP 419
Y++SLQ Q++ + M S + P++ ++ +++ + P P
Sbjct: 223 NYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSAPTFP 267
>gi|224029073|gb|ACN33612.1| unknown [Zea mays]
gi|413938471|gb|AFW73022.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 350
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIE 376
G KT RR +A + H+L+ER RR+RI+E+MR LQEL+P C+K T KA MLDE I
Sbjct: 138 GQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIIN 197
Query: 377 YLKSLQLQLQVMWM 390
Y++SLQ Q++ + M
Sbjct: 198 YVQSLQKQVEFLSM 211
>gi|449509268|ref|XP_004163540.1| PREDICTED: transcription factor bHLH74-like [Cucumis sativus]
Length = 402
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 234 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 293
Query: 387 VMWM 390
+ M
Sbjct: 294 FLSM 297
>gi|225458914|ref|XP_002285475.1| PREDICTED: transcription factor bHLH74 [Vitis vinifera]
gi|302142156|emb|CBI19359.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 267 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 326
Query: 387 VMWM 390
+ M
Sbjct: 327 FLSM 330
>gi|224060782|ref|XP_002300268.1| predicted protein [Populus trichocarpa]
gi|222847526|gb|EEE85073.1| predicted protein [Populus trichocarpa]
Length = 317
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 10/95 (10%)
Query: 315 SGAGNKTAQRSGSCRRSRAAEV--HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLD 372
S G T SG R S+ A +L R+RR+RINE++R LQ L+P+ K D ++ML+
Sbjct: 211 SSKGTTTLNSSGKTRASKGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLE 270
Query: 373 EAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
EA++Y+K LQLQ+++ +WM AP+ + GM
Sbjct: 271 EAVQYVKFLQLQIKLLSSEDLWM---YAPIAYNGM 302
>gi|218187189|gb|EEC69616.1| hypothetical protein OsI_38990 [Oryza sativa Indica Group]
Length = 379
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQV 387
R AA HNL+E+RRR +I E+ R LQ L+P C NK+++AS LD+ I+Y+KSLQ QL+
Sbjct: 192 RHRHAAGAHNLTEKRRRFKITERFRTLQRLVPGCDNKSNQASTLDQTIQYMKSLQHQLEA 251
Query: 388 M-WMGSGMAPLMFPGMQHYMSRM 409
+GS A +++P H S M
Sbjct: 252 TSAVGSPAAAVLYPAAVHPQSYM 274
>gi|15222679|ref|NP_173950.1| transcription factor bHLH76 [Arabidopsis thaliana]
gi|42571645|ref|NP_973913.1| transcription factor bHLH76 [Arabidopsis thaliana]
gi|75308803|sp|Q9C670.1|BH076_ARATH RecName: Full=Transcription factor bHLH76; AltName: Full=Basic
helix-loop-helix protein 76; Short=AtbHLH76; Short=bHLH
76; AltName: Full=Transcription factor EN 83; AltName:
Full=bHLH transcription factor bHLH076
gi|12321176|gb|AAG50678.1|AC079829_11 bHLH transcription factor GBOF-1, putative [Arabidopsis thaliana]
gi|26449804|dbj|BAC42025.1| putative transcription factor bHLH076 [Arabidopsis thaliana]
gi|28950949|gb|AAO63398.1| At1g26260 [Arabidopsis thaliana]
gi|332192546|gb|AEE30667.1| transcription factor bHLH76 [Arabidopsis thaliana]
gi|332192547|gb|AEE30668.1| transcription factor bHLH76 [Arabidopsis thaliana]
Length = 390
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 18/165 (10%)
Query: 273 SSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS----- 327
SSGG+G + + S+ S K++ R D E + + + + A ++ S
Sbjct: 154 SSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPS 213
Query: 328 -----------CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAI 375
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I
Sbjct: 214 DSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEII 273
Query: 376 EYLKSLQLQLQVMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLP 419
Y++SLQ Q++ + M S + P++ ++ +++ + P P
Sbjct: 274 NYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSAPTFP 318
>gi|18423212|ref|NP_568745.1| transcription factor bHLH137 [Arabidopsis thaliana]
gi|30695963|ref|NP_851163.1| transcription factor bHLH137 [Arabidopsis thaliana]
gi|75305763|sp|Q93W88.1|BH137_ARATH RecName: Full=Transcription factor bHLH137; AltName: Full=Basic
helix-loop-helix protein 137; Short=AtbHLH137;
Short=bHLH 137; AltName: Full=Transcription factor EN
89; AltName: Full=bHLH transcription factor bHLH137
gi|16226850|gb|AAL16280.1|AF428350_1 unknown protein [Arabidopsis thaliana]
gi|15982883|gb|AAL09788.1| probable DNA-binding protein [Arabidopsis thaliana]
gi|21360503|gb|AAM47367.1| At5g50917/At5g50917 [Arabidopsis thaliana]
gi|21593195|gb|AAM65144.1| unknown [Arabidopsis thaliana]
gi|332008626|gb|AED96009.1| transcription factor bHLH137 [Arabidopsis thaliana]
gi|332008627|gb|AED96010.1| transcription factor bHLH137 [Arabidopsis thaliana]
Length = 286
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 18/159 (11%)
Query: 255 ISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFE 314
+ +E +E + T +++ GS S + S N+ K + R A +S E G E
Sbjct: 57 VDKTENSGSEKLANTTKTATTGSSSCDQLSHGPSAITNTGKTRGRKARNSNNSKE--GVE 114
Query: 315 SGAGNKTAQRSGS------------CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
K Q+ GS RR +A + H+L+ER RR++I+E+MR LQ L+P C
Sbjct: 115 GRKSKK--QKRGSKEEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGC 172
Query: 363 NK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF 399
+K T KA MLDE I Y+++LQ Q++ + M + ++P+++
Sbjct: 173 DKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISPVVY 211
>gi|297798526|ref|XP_002867147.1| hypothetical protein ARALYDRAFT_491291 [Arabidopsis lyrata subsp.
lyrata]
gi|297312983|gb|EFH43406.1| hypothetical protein ARALYDRAFT_491291 [Arabidopsis lyrata subsp.
lyrata]
Length = 351
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 15/112 (13%)
Query: 303 DSECQSEAAGFESGA-----GNKTAQRSGSCRRSRAAEV--HNLSERRRRDRINEKMRAL 355
+S C + G E + +K +G R SR A +L R+RR+RINE++R L
Sbjct: 235 ESNCADQDGGGEDSSSKEDDASKALNLNGKTRASRGAATDPQSLYARKRRERINERLRIL 294
Query: 356 QELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
Q L+P+ K D ++ML+EA+ Y+K LQLQ+++ +WM AP+ F GM
Sbjct: 295 QNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWM---YAPIAFNGM 343
>gi|222623841|gb|EEE57973.1| hypothetical protein OsJ_08713 [Oryza sativa Japonica Group]
Length = 432
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 48/60 (80%), Gaps = 5/60 (8%)
Query: 344 RRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM-----GSGMAPLM 398
RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M S +APL+
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAPLV 311
>gi|77556960|gb|ABA99756.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
gi|125537220|gb|EAY83708.1| hypothetical protein OsI_38930 [Oryza sativa Indica Group]
gi|125579902|gb|EAZ21048.1| hypothetical protein OsJ_36693 [Oryza sativa Japonica Group]
Length = 304
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 61/94 (64%), Gaps = 11/94 (11%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
++GA +K R+G R A + +L R+RR+RINE+++ LQ L+P+ K D ++ML+E
Sbjct: 207 DAGATSKGKSRAG---RGAATDPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEE 263
Query: 374 AIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
A+ Y+K LQLQ+++ MWM AP+ + GM
Sbjct: 264 AVHYVKFLQLQIKLLSSDEMWM---YAPIAYNGM 294
>gi|226495537|ref|NP_001141393.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
gi|194704318|gb|ACF86243.1| unknown [Zea mays]
gi|413923610|gb|AFW63542.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 342
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIE 376
G+KT RR +A + H+L+ER RR+RI+E+MR LQEL+P C+K T KA MLDE I
Sbjct: 135 GHKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIIN 194
Query: 377 YLKSLQLQLQVMWM 390
Y++SLQ Q++ + M
Sbjct: 195 YVQSLQKQVEFLSM 208
>gi|125541459|gb|EAY87854.1| hypothetical protein OsI_09276 [Oryza sativa Indica Group]
Length = 431
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 48/60 (80%), Gaps = 5/60 (8%)
Query: 344 RRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM-----GSGMAPLM 398
RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M S +APL+
Sbjct: 251 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAPLV 310
>gi|116831075|gb|ABK28492.1| unknown [Arabidopsis thaliana]
Length = 329
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 10/96 (10%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEV--HNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
E G +K +G R SR A +L R+RR+RINE++R LQ L+P+ K D ++ML
Sbjct: 223 EDGEDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTML 282
Query: 372 DEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
+EA++Y+K LQLQ+++ +WM AP+ + GM
Sbjct: 283 EEAVQYVKFLQLQIKLLSSDDLWM---YAPIAYNGM 315
>gi|47497022|dbj|BAD19075.1| basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group]
gi|47497231|dbj|BAD19276.1| basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group]
Length = 463
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 48/60 (80%), Gaps = 5/60 (8%)
Query: 344 RRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM-----GSGMAPLM 398
RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M S +APL+
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAPLV 311
>gi|356574311|ref|XP_003555292.1| PREDICTED: transcription factor bHLH85-like [Glycine max]
Length = 358
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 62/99 (62%), Gaps = 13/99 (13%)
Query: 324 RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R S AA+ +L R+RR+RINE++R LQ L+P+ K D ++ML+EA++Y+K LQL
Sbjct: 262 RKSRATTSAAADPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQL 321
Query: 384 QLQV-----MWMGSGMAPLMFPGMQHYMSRMGMGMGPPP 417
Q+++ +WM AP+++ G+ +G+ +G P
Sbjct: 322 QIKLLSSEDLWM---YAPIVYNGIN-----IGLDLGISP 352
>gi|413923611|gb|AFW63543.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 352
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIE 376
G+KT RR +A + H+L+ER RR+RI+E+MR LQEL+P C+K T KA MLDE I
Sbjct: 135 GHKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIIN 194
Query: 377 YLKSLQLQLQVMWM 390
Y++SLQ Q++ + M
Sbjct: 195 YVQSLQKQVEFLSM 208
>gi|42569042|ref|NP_179083.2| transcription factor bHLH84 [Arabidopsis thaliana]
gi|75296240|sp|Q7XHI9.1|BH084_ARATH RecName: Full=Transcription factor bHLH84; AltName: Full=Basic
helix-loop-helix protein 84; Short=AtbHLH84; Short=bHLH
84; AltName: Full=bHLH transcription factor bHLH084
gi|33111969|emb|CAE12171.1| putative bHLH084 transcription factor [Arabidopsis thaliana]
gi|91806168|gb|ABE65812.1| basic helix-loop-helix protein/bHLH protein [Arabidopsis thaliana]
gi|330251237|gb|AEC06331.1| transcription factor bHLH84 [Arabidopsis thaliana]
Length = 328
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 10/96 (10%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEV--HNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
E G +K +G R SR A +L R+RR+RINE++R LQ L+P+ K D ++ML
Sbjct: 223 EDGEDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTML 282
Query: 372 DEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
+EA++Y+K LQLQ+++ +WM AP+ + GM
Sbjct: 283 EEAVQYVKFLQLQIKLLSSDDLWM---YAPIAYNGM 315
>gi|223945659|gb|ACN26913.1| unknown [Zea mays]
Length = 267
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 8/115 (6%)
Query: 278 GSSFNRTSKQSTGDNS-LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEV 336
GS + +S +S G+ S L+R+ V EC E AG + +R +A
Sbjct: 81 GSGEDSSSLRSLGETSALQRE----VSMECADEKAG--DARAKREDYVHVRAKRGQATNS 134
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
H+L+ER RR++INE+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 135 HSLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEIINYVQSLQRQIEFLSM 189
>gi|224081861|ref|XP_002306505.1| predicted protein [Populus trichocarpa]
gi|222855954|gb|EEE93501.1| predicted protein [Populus trichocarpa]
Length = 407
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 242 ARRGQATNSHSLAERVRREKISERMRMLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 301
Query: 387 VMWM 390
+ M
Sbjct: 302 FLSM 305
>gi|357151466|ref|XP_003575800.1| PREDICTED: putative transcription factor bHLH086-like [Brachypodium
distachyon]
Length = 256
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 63/94 (67%), Gaps = 10/94 (10%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
+S N++ SG C+R + + +L ++RR+RINEK+R LQ+LIP+ K D ++ML+E
Sbjct: 153 KSIVANQSDNTSG-CKRP-SKNMQSLYAKKRRERINEKLRVLQQLIPNGTKVDISTMLEE 210
Query: 374 AIEYLKSLQLQLQVM-----WMGSGMAPLMFPGM 402
A++Y+K LQLQ++V+ WM APL + GM
Sbjct: 211 AVQYVKFLQLQIKVLSSDETWM---YAPLAYNGM 241
>gi|413923609|gb|AFW63541.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 316
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIE 376
G+KT RR +A + H+L+ER RR+RI+E+MR LQEL+P C+K T KA MLDE I
Sbjct: 135 GHKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIIN 194
Query: 377 YLKSLQLQLQVMWM 390
Y++SLQ Q++ + M
Sbjct: 195 YVQSLQKQVEFLSM 208
>gi|218195917|gb|EEC78344.1| hypothetical protein OsI_18091 [Oryza sativa Indica Group]
Length = 339
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 70/111 (63%), Gaps = 15/111 (13%)
Query: 291 DNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINE 350
D+ +K+K++ EAAG E AG + RR +A + H+L+ER RR++I+E
Sbjct: 158 DDDVKKKAK---------EAAGGEPPAGYIHVR----ARRGQATDSHSLAERVRREKISE 204
Query: 351 KMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF 399
+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++ + M + + PLM+
Sbjct: 205 RMKMLQSLVPGCDKVTGKALMLDEIISYVQSLQNQVEFLSMKLASLNPLMY 255
>gi|77556977|gb|ABA99773.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
Length = 266
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQV 387
R AA HNL+E+RRR +I E+ R LQ L+P C NK+++AS LD+ I+Y+KSLQ QL+
Sbjct: 79 RHRHAAGAHNLTEKRRRFKITERFRTLQRLVPGCDNKSNQASTLDQTIQYMKSLQHQLEA 138
Query: 388 M-WMGSGMAPLMFPGMQHYMSRM 409
+GS A +++P H S M
Sbjct: 139 TSAVGSPAAAVLYPAAVHPQSYM 161
>gi|223702402|gb|ACN21632.1| putative basic helix-loop-helix protein BHLH7 [Lotus japonicus]
Length = 340
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 26/121 (21%)
Query: 296 RKSRDAVDSE-CQSEAAGFESGAGNKTAQRS---GSC---------------------RR 330
+ R VDSE +S G S NKTA +S G+C RR
Sbjct: 112 KDKRIKVDSEDGESNITGKISIKDNKTATKSKNRGTCANSSNSKENEDQKLDYIHVRARR 171
Query: 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMW 389
+A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ +
Sbjct: 172 GQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLS 231
Query: 390 M 390
M
Sbjct: 232 M 232
>gi|255537964|ref|XP_002510047.1| DNA binding protein, putative [Ricinus communis]
gi|223550748|gb|EEF52234.1| DNA binding protein, putative [Ricinus communis]
Length = 408
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 244 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 303
Query: 387 VMWM 390
+ M
Sbjct: 304 FLSM 307
>gi|20127093|gb|AAM10959.1|AF488616_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 352
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 15/112 (13%)
Query: 303 DSECQSEAAGFESGAG-----NKTAQRSGSCRRSRAAEV--HNLSERRRRDRINEKMRAL 355
+S C + G E + +K +G R SR A +L R+RR+RINE++R L
Sbjct: 236 ESNCADQDGGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRIL 295
Query: 356 QELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
Q L+P+ K D ++ML+EA+ Y+K LQLQ+++ +WM AP+ F GM
Sbjct: 296 QNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWM---YAPIAFNGM 344
>gi|242062782|ref|XP_002452680.1| hypothetical protein SORBIDRAFT_04g030530 [Sorghum bicolor]
gi|241932511|gb|EES05656.1| hypothetical protein SORBIDRAFT_04g030530 [Sorghum bicolor]
Length = 359
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIE 376
G KT RR +A + H+L+ER RR+RI+E+MR LQEL+P C+K T KA MLDE I
Sbjct: 145 GQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIIN 204
Query: 377 YLKSLQLQLQVMWM 390
Y++SLQ Q++ + M
Sbjct: 205 YVQSLQKQVEFLSM 218
>gi|30689839|ref|NP_195114.2| transcription factor bHLH85 [Arabidopsis thaliana]
gi|75298259|sp|Q84WK0.1|BH085_ARATH RecName: Full=Transcription factor bHLH85; AltName: Full=Basic
helix-loop-helix protein 85; Short=AtbHLH85; Short=bHLH
85; AltName: Full=Transcription factor EN 115; AltName:
Full=bHLH transcription factor bHLH085
gi|27808578|gb|AAO24569.1| At4g33880 [Arabidopsis thaliana]
gi|110736194|dbj|BAF00068.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|332660887|gb|AEE86287.1| transcription factor bHLH85 [Arabidopsis thaliana]
Length = 352
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 15/112 (13%)
Query: 303 DSECQSEAAGFESGAG-----NKTAQRSGSCRRSRAAEV--HNLSERRRRDRINEKMRAL 355
+S C + G E + +K +G R SR A +L R+RR+RINE++R L
Sbjct: 236 ESNCADQDGGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRIL 295
Query: 356 QELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
Q L+P+ K D ++ML+EA+ Y+K LQLQ+++ +WM AP+ F GM
Sbjct: 296 QNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWM---YAPIAFNGM 344
>gi|3297812|emb|CAA19870.1| putative protein [Arabidopsis thaliana]
gi|7270337|emb|CAB80105.1| putative protein [Arabidopsis thaliana]
Length = 349
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 15/112 (13%)
Query: 303 DSECQSEAAGFESGAG-----NKTAQRSGSCRRSRAAEV--HNLSERRRRDRINEKMRAL 355
+S C + G E + +K +G R SR A +L R+RR+RINE++R L
Sbjct: 233 ESNCADQDGGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRIL 292
Query: 356 QELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
Q L+P+ K D ++ML+EA+ Y+K LQLQ+++ +WM AP+ F GM
Sbjct: 293 QNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWM---YAPIAFNGM 341
>gi|238005608|gb|ACR33839.1| unknown [Zea mays]
gi|413938469|gb|AFW73020.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 246
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIE 376
G KT RR +A + H+L+ER RR+RI+E+MR LQEL+P C+K T KA MLDE I
Sbjct: 138 GQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIIN 197
Query: 377 YLKSLQLQLQV 387
Y++SLQ Q++V
Sbjct: 198 YVQSLQKQVEV 208
>gi|449447083|ref|XP_004141299.1| PREDICTED: transcription factor bHLH74-like [Cucumis sativus]
Length = 249
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 81 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 140
Query: 387 VMWM 390
+ M
Sbjct: 141 FLSM 144
>gi|414865637|tpg|DAA44194.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 289
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 8/115 (6%)
Query: 278 GSSFNRTSKQSTGDNS-LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEV 336
GS + +S +S G+ S L+R+ V EC E AG + +R +A
Sbjct: 81 GSGEDSSSLRSLGETSALQRE----VSMECADEKAG--DARAKREDYVHVRAKRGQATNS 134
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
H+L+ER RR++INE+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 135 HSLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEIINYVQSLQRQIEFLSM 189
>gi|293333598|ref|NP_001167725.1| uncharacterized protein LOC100381413 [Zea mays]
gi|223943625|gb|ACN25896.1| unknown [Zea mays]
gi|414865638|tpg|DAA44195.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 211
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 8/115 (6%)
Query: 278 GSSFNRTSKQSTGDNS-LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEV 336
GS + +S +S G+ S L+R+ V EC E AG + +R +A
Sbjct: 81 GSGEDSSSLRSLGETSALQRE----VSMECADEKAG--DARAKREDYVHVRAKRGQATNS 134
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
H+L+ER RR++INE+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 135 HSLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEIINYVQSLQRQIEFLSM 189
>gi|242033665|ref|XP_002464227.1| hypothetical protein SORBIDRAFT_01g014580 [Sorghum bicolor]
gi|241918081|gb|EER91225.1| hypothetical protein SORBIDRAFT_01g014580 [Sorghum bicolor]
Length = 300
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 8/78 (10%)
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-- 387
R A E +L R+RR+RINE++R LQ L+P+ K D ++ML+EA+EY+K LQLQ+++
Sbjct: 214 RRSATESQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLS 273
Query: 388 ---MWMGSGMAPLMFPGM 402
MWM AP+ + GM
Sbjct: 274 SDEMWM---YAPIAYNGM 288
>gi|224128880|ref|XP_002320444.1| hypothetical protein POPTRDRAFT_572918 [Populus trichocarpa]
gi|222861217|gb|EEE98759.1| hypothetical protein POPTRDRAFT_572918 [Populus trichocarpa]
Length = 568
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 371 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 430
Query: 387 VMWMG-SGMAPLMFPGMQHYMSR 408
+ M S + P M M+ +S+
Sbjct: 431 FLSMKLSSVNPRMEINMETLLSK 453
>gi|79340401|ref|NP_172483.4| transcription factor bHLH74 [Arabidopsis thaliana]
gi|75291341|sp|Q6NKN9.1|BH074_ARATH RecName: Full=Transcription factor bHLH74; AltName: Full=Basic
helix-loop-helix protein 74; Short=AtbHLH74; Short=bHLH
74; AltName: Full=Transcription factor EN 90; AltName:
Full=bHLH transcription factor bHLH074
gi|46931340|gb|AAT06474.1| At1g10120 [Arabidopsis thaliana]
gi|62320956|dbj|BAD93978.1| bHLH transcription factor like protein [Arabidopsis thaliana]
gi|332190423|gb|AEE28544.1| transcription factor bHLH74 [Arabidopsis thaliana]
Length = 366
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 208 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 267
Query: 387 VMWM 390
+ M
Sbjct: 268 FLSM 271
>gi|297849334|ref|XP_002892548.1| hypothetical protein ARALYDRAFT_888270 [Arabidopsis lyrata subsp.
lyrata]
gi|297338390|gb|EFH68807.1| hypothetical protein ARALYDRAFT_888270 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 206 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 265
Query: 387 VMWM 390
+ M
Sbjct: 266 FLSM 269
>gi|212721642|ref|NP_001131806.1| uncharacterized protein LOC100193179 [Zea mays]
gi|194692596|gb|ACF80382.1| unknown [Zea mays]
gi|414869722|tpg|DAA48279.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 315
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 62/92 (67%), Gaps = 8/92 (8%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 141 ARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVE 200
Query: 387 VMWMG-SGMAPLMF------PGMQHYMSRMGM 411
+ M + M+P+++ G+ + +MG+
Sbjct: 201 FLSMRIASMSPVLYGFGLDSDGLHDHAQKMGV 232
>gi|297602519|ref|NP_001052532.2| Os04g0350700 [Oryza sativa Japonica Group]
gi|57834129|emb|CAE05521.2| OSJNBa0038P21.14 [Oryza sativa Japonica Group]
gi|215766234|dbj|BAG98462.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255675358|dbj|BAF14446.2| Os04g0350700 [Oryza sativa Japonica Group]
Length = 263
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+M+ LQ L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 83 ARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQVE 142
Query: 387 VMWMGSGMAPLMFPGMQHYMSRMGMGMGPPP 417
+ M HYM M P P
Sbjct: 143 FLSMKLATMNPQLDFDSHYMPSKDMSHMPVP 173
>gi|4218118|emb|CAA22972.1| putative protein [Arabidopsis thaliana]
gi|7269735|emb|CAB81468.1| putative protein [Arabidopsis thaliana]
Length = 478
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 90/209 (43%), Gaps = 59/209 (28%)
Query: 260 RGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGN 319
+GK +E T SSG + Q ++ LK + E G
Sbjct: 199 KGKAVAVEAAGTPSSGVCKAETEPVQIQPATESKLKAR----------------EETHGT 242
Query: 320 KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK--TDKASMLDEAIEY 377
+ A+ S S +RSR AE+HNL+ERRRR++INEKM+ LQ+LIP CNK +D S L +++
Sbjct: 243 EEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKVESDSVSTLISLLKF 302
Query: 378 LKSLQLQ-----------------------------------LQVMWMGSG-MAPLMFPG 401
+ + L +++M G G M+P+M G
Sbjct: 303 QRWMMLSSTSNRYRAKYKYALQNRMCFKPMVQHGKSSYVSSFVEMMSTGQGMMSPMMNAG 362
Query: 402 -MQHYMSRMGMGMGPP----PLPSVTNPM 425
Q +M M M M P P P + PM
Sbjct: 363 NTQQFMPHMAMDMNRPPPFIPFPGTSFPM 391
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 30/105 (28%)
Query: 25 QDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSN------- 77
+++++VELLWQ+G VV ++Q Q +++ P LRGSGS N
Sbjct: 18 REDDIVELLWQSGQVVGTNQTHRQ-----SYDPP-----PILRGSGSGRGEENAPLSQPP 67
Query: 78 --------LIQDDETVSWIHCPIEDSFEKDFY-SQLFSELPPSGP 113
IQ+ E SW+H S+ ++++ S+L + P + P
Sbjct: 68 PHLHQQNLFIQEGEMYSWLH----HSYRQNYFCSELLNSTPATHP 108
>gi|297797077|ref|XP_002866423.1| hypothetical protein ARALYDRAFT_358332 [Arabidopsis lyrata subsp.
lyrata]
gi|297312258|gb|EFH42682.1| hypothetical protein ARALYDRAFT_358332 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 15/141 (10%)
Query: 269 TVTSSSGGSGSSFN-----RTSKQS-TGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTA 322
+VT+S G+ S+ R+ K + TGD R + D+E + E+G
Sbjct: 148 SVTASDSGTNMSWASFESARSLKTARTGDRDYIRSGSETQDTEGDEQETRGEAG------ 201
Query: 323 QRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
S RR RAA +HN SERRRRDRIN++MR LQ+L+P +K DK S+LD+ IE+LK LQ
Sbjct: 202 --RSSGRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQ 259
Query: 383 LQLQVMWMGSGM-APLMFPGM 402
Q+Q M + + + +M P +
Sbjct: 260 AQVQFMSLRANLPQQMMIPQL 280
>gi|224067162|ref|XP_002302386.1| predicted protein [Populus trichocarpa]
gi|222844112|gb|EEE81659.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 165 ARRGQATNSHSLAERVRREKISERMRMLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 224
Query: 387 VMWM 390
+ M
Sbjct: 225 FLSM 228
>gi|79320926|ref|NP_001031255.1| transcription factor bHLH49 [Arabidopsis thaliana]
gi|227204401|dbj|BAH57052.1| AT1G68920 [Arabidopsis thaliana]
gi|332196742|gb|AEE34863.1| transcription factor bHLH49 [Arabidopsis thaliana]
Length = 485
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 39/181 (21%)
Query: 249 DDVRKVISPSERGKTETIEPTV---------TSSSGGSG-----SSFNRTSKQSTGDNSL 294
+DV + S +E +P V T SSGG+G +S N ++ G NS
Sbjct: 187 NDVSVAVKESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQKGRETSSNTKKRKRNGQNSE 246
Query: 295 KRKSRDAVDSECQSEAAGFE--------------SGAGNKTAQRSGS----------CRR 330
+S + SE + + G E S +G + ++S RR
Sbjct: 247 AAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARR 306
Query: 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMW 389
+A H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ +
Sbjct: 307 GQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLS 366
Query: 390 M 390
M
Sbjct: 367 M 367
>gi|158147058|gb|ABW22630.1| bHLH transcription factor Upa20 [Capsicum annuum]
gi|158147060|gb|ABW22631.1| bHLH transcription factor Upa20 [Capsicum annuum]
gi|158147061|gb|ABW22632.1| bHLH transcription factor Upa20 [Capsicum annuum]
Length = 340
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 24/185 (12%)
Query: 231 NQVAYDLDMSR------ASSSGLNDDVRKVISPSERGKTETIEPTVTS-------SSGGS 277
N+ +Y LD + +SS L+ D V E G + P VTS S GS
Sbjct: 63 NENSYCLDQNTNVTNKSSSSISLDMDSSSVTDKMESGNNK---PNVTSPMDKKRKSREGS 119
Query: 278 GSSFNRTSKQST-GDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEV 336
S + SK T GDN K KS + ++ + +A E+ G + RR +A +
Sbjct: 120 SSMTSANSKNVTQGDNGKKNKSNSKLVAKDEKKANE-EAPTGYIHVR----ARRGQATDS 174
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGM 394
H+L+ER RR++I+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++ + M + +
Sbjct: 175 HSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASL 234
Query: 395 APLMF 399
P+ +
Sbjct: 235 NPMYY 239
>gi|50509096|dbj|BAD30156.1| putative bHLH protein [Oryza sativa Japonica Group]
Length = 268
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 16/107 (14%)
Query: 297 KSRDAVDSECQSEAAGFESGAGNKTAQRSGS-------------CRRSRAAEVHNLSERR 343
KS D DS ++EA G +SG +K A ++ + RR +A + H+L+ER
Sbjct: 88 KSSDKNDS-LRTEA-GTDSGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLAERA 145
Query: 344 RRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMW 389
RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y++SLQ Q++ M+
Sbjct: 146 RREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQSLQHQVEFMF 192
>gi|255573157|ref|XP_002527508.1| DNA binding protein, putative [Ricinus communis]
gi|223533148|gb|EEF34906.1| DNA binding protein, putative [Ricinus communis]
Length = 296
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 10/102 (9%)
Query: 315 SGAGNKTAQRSGSCRRSRAAEV--HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLD 372
S G+ +G R SR A ++ R+RR+RINE++R LQ L+P+ K D ++ML+
Sbjct: 194 SSKGDAALNLNGKTRASRGAATDPQSIYARKRRERINERLRILQNLVPNGTKVDISTMLE 253
Query: 373 EAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGMQHYMSRM 409
EA+ Y+K LQLQ+++ +WM APL + GM + ++
Sbjct: 254 EAVHYVKFLQLQIKLLSSDDLWM---YAPLAYNGMDIGLDKL 292
>gi|297795891|ref|XP_002865830.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297311665|gb|EFH42089.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 281
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 107/221 (48%), Gaps = 33/221 (14%)
Query: 259 ERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAG 318
E+ T T SSS GSS T + G RK+R+ +S+ G E
Sbjct: 70 EKQANTTKTATTRSSSCDHGSSAITTIGKKRG-----RKARNVSNSK-----EGVEGTKS 119
Query: 319 NKTAQRSGS------------CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-T 365
K Q+ GS RR +A + H+L+ER RR++I+E+MR LQ L+P C+K T
Sbjct: 120 KK--QKRGSKEEPPKDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVT 177
Query: 366 DKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF---PGMQHYMSRMGMGMGPPPLPSV 421
KA MLDE I Y+++LQ Q++ + M + ++P+++ + + R MG P S
Sbjct: 178 GKALMLDEIINYVQTLQNQVEFLSMKLTSISPVVYDFGSDLDGLVLRSEMG-SPEVGTSF 236
Query: 422 TN--PMHFSRVP-LVDQSMSMAQAQNRAVMCQASVLNPVNY 459
TN P S P L+D ++ + + R S N N+
Sbjct: 237 TNTMPTTTSIFPSLLDNAIVQEEGEGREKFVDRSGFNNNNF 277
>gi|242079823|ref|XP_002444680.1| hypothetical protein SORBIDRAFT_07g025920 [Sorghum bicolor]
gi|241941030|gb|EES14175.1| hypothetical protein SORBIDRAFT_07g025920 [Sorghum bicolor]
Length = 293
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 61/91 (67%), Gaps = 8/91 (8%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 124 ARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVE 183
Query: 387 VMWMG-SGMAPLMF------PGMQHYMSRMG 410
+ M + M+P+++ G+ + +MG
Sbjct: 184 FLSMRIASMSPVLYGFGLDSDGLHDHAQKMG 214
>gi|219362473|ref|NP_001136461.1| uncharacterized protein LOC100216572 [Zea mays]
gi|194695798|gb|ACF81983.1| unknown [Zea mays]
Length = 366
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIE 376
G KT RR +A + H+L+ER RR+RI+E+MR LQEL+P C+K T KA MLDE I
Sbjct: 138 GQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCSKVTGKAGMLDEIIN 197
Query: 377 YLKSLQLQLQVMWM 390
Y++SLQ Q++ + M
Sbjct: 198 YVQSLQKQVEFLSM 211
>gi|293332391|ref|NP_001168665.1| uncharacterized protein LOC100382453 [Zea mays]
gi|223950025|gb|ACN29096.1| unknown [Zea mays]
gi|414877116|tpg|DAA54247.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 398
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/40 (82%), Positives = 37/40 (92%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKA 368
+RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK ++
Sbjct: 354 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKVRRS 393
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 33/111 (29%)
Query: 27 NELVELLWQNGHVVLSSQAQTQRKPSL-------------NHNEPRQVQKQTLRGSGS-- 71
N+ VELLW+NG V+ + + + + N+P +L +G
Sbjct: 10 NDFVELLWENGQAVVHGRRKQHPQAAFPPFTCGAASSSRAQENQPGTTDPVSLFKTGGLF 69
Query: 72 CGNSSNLIQD------DETVSWIHCPI--EDS----------FEKDFYSQL 104
SS L D+TV WIHCPI EDS + DF+S+L
Sbjct: 70 ADFSSGLDAARGNGDLDDTVPWIHCPIVEEDSAAPAPALAEGYSPDFFSEL 120
>gi|312281909|dbj|BAJ33820.1| unnamed protein product [Thellungiella halophila]
Length = 363
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 14/126 (11%)
Query: 269 TVTSSSGGSGSSF-----NRTSKQS-TGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTA 322
+VT+S+ G+ S+ R+ K + TGD + D+E + E+G N
Sbjct: 104 SVTASASGTNMSWASFESGRSLKTARTGDRDYLLSGSETQDTEGDEQETRGEAGRSNG-- 161
Query: 323 QRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
RR RAA +HN SERRRRDRIN++MR LQ+L+P +K DK S+LD+ IE+LK LQ
Sbjct: 162 ------RRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQ 215
Query: 383 LQLQVM 388
Q+Q M
Sbjct: 216 AQVQFM 221
>gi|414865634|tpg|DAA44191.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 262
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 8/115 (6%)
Query: 278 GSSFNRTSKQSTGDNS-LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEV 336
GS + +S +S G+ S L+R+ V EC E AG + +R +A
Sbjct: 55 GSGEDSSSLRSLGETSALQRE----VSMECADEKAG--DARAKREDYVHVRAKRGQATNS 108
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
H+L+ER RR++INE+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 109 HSLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEIINYVQSLQRQIEFLSM 163
>gi|20127044|gb|AAM10942.1|AF488584_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 486
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 88/187 (47%), Gaps = 50/187 (26%)
Query: 249 DDVRKVISPSERGKTETIEPTV---------TSSSGGSGSSFNRTSKQSTGDNSLKRKSR 299
+DV + S +E EP V T SSGG+G TS N+ KRK
Sbjct: 187 NDVSVAVKESTVRSSEQAEPNVPGSGNVSEDTQSSGGNGQKGRETSS-----NTKKRKRN 241
Query: 300 DAVDSEC-------QSE------------------AAGFESGAGNKTAQRSGS------- 327
+SE QSE + G +S +G + ++S
Sbjct: 242 GQKNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYI 301
Query: 328 ---CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQL 383
RR +A H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ
Sbjct: 302 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQR 361
Query: 384 QLQVMWM 390
Q++ + M
Sbjct: 362 QVEFLSM 368
>gi|125557558|gb|EAZ03094.1| hypothetical protein OsI_25238 [Oryza sativa Indica Group]
gi|125599428|gb|EAZ39004.1| hypothetical protein OsJ_23423 [Oryza sativa Japonica Group]
Length = 256
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 27/144 (18%)
Query: 297 KSRDAVDSECQSEAAGFESGAGNKTAQRSGS-------------CRRSRAAEVHNLSERR 343
KS D DS ++EA G +SG +K A ++ + RR +A + H+L+ER
Sbjct: 88 KSSDKNDS-LRTEA-GTDSGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLAERA 145
Query: 344 RRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM-----GSGM--A 395
RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y++SLQ Q++ + M S M
Sbjct: 146 RREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQSLQHQVEFLSMKLEAVNSHMING 205
Query: 396 PLMFP----GMQHYMSRMGMGMGP 415
+ FP G Q Y + G+ P
Sbjct: 206 IVAFPSKDFGAQPYNTAAGLTFDP 229
>gi|223946943|gb|ACN27555.1| unknown [Zea mays]
Length = 386
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/36 (91%), Positives = 35/36 (97%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
+RSR AEVHNLSERRRRDRINEKMRALQELIP+CNK
Sbjct: 349 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNK 384
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 33/115 (28%)
Query: 23 MGQDNELVELLWQNGHVVLSSQAQTQRKPSL-------------NHNEPRQVQKQTLRGS 69
M N+ VELLW+NG V+ + + + + N+P +L +
Sbjct: 1 MSDSNDFVELLWENGQAVVHGRRKQHPQAAFPPFTCGAASSSRAQENQPGTTDPVSLFKT 60
Query: 70 GS--CGNSSNLIQD------DETVSWIHCPI--EDS----------FEKDFYSQL 104
G SS L D+TV WIHCPI EDS + DF+S+L
Sbjct: 61 GGLFADFSSGLDAARGNGDLDDTVPWIHCPIVEEDSAAPAPALAEGYSPDFFSEL 115
>gi|449473858|ref|XP_004154003.1| PREDICTED: uncharacterized protein LOC101205943 [Cucumis sativus]
gi|449518641|ref|XP_004166345.1| PREDICTED: uncharacterized LOC101205943 [Cucumis sativus]
Length = 372
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 15/119 (12%)
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
R K +G L+ K +D+ D G T RR +A + H+L+ER
Sbjct: 150 RDQKAKSGKKLLEEKLKDSED-------------GGATTGYIHVRARRGQATDSHSLAER 196
Query: 343 RRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF 399
RR++I+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++ + M + + P+ F
Sbjct: 197 VRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFF 255
>gi|414865635|tpg|DAA44192.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 185
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 16/119 (13%)
Query: 278 GSSFNRTSKQSTGDNS-LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG----SCRRSR 332
GS + +S +S G+ S L+R+ V EC E AG + A+R +R +
Sbjct: 55 GSGEDSSSLRSLGETSALQRE----VSMECADEKAG------DARAKREDYVHVRAKRGQ 104
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
A H+L+ER RR++INE+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 105 ATNSHSLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEIINYVQSLQRQIEFLSM 163
>gi|297848442|ref|XP_002892102.1| hypothetical protein ARALYDRAFT_333565 [Arabidopsis lyrata subsp.
lyrata]
gi|297337944|gb|EFH68361.1| hypothetical protein ARALYDRAFT_333565 [Arabidopsis lyrata subsp.
lyrata]
Length = 279
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Query: 340 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMF 399
S+RRR D + KMR LQ+L+P C+KTDK S+LD AIEY+KSLQLQ +VM M GM P F
Sbjct: 129 SKRRRSDELCNKMRTLQQLVPDCHKTDKVSVLDNAIEYMKSLQLQFKVMSM-MGMNPY-F 186
Query: 400 PG 401
P
Sbjct: 187 PS 188
>gi|110738493|dbj|BAF01172.1| bHLH transcription factor like protein [Arabidopsis thaliana]
Length = 314
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 156 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 215
Query: 387 VMWM 390
+ M
Sbjct: 216 FLSM 219
>gi|222628662|gb|EEE60794.1| hypothetical protein OsJ_14380 [Oryza sativa Japonica Group]
Length = 293
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+M+ LQ L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 113 ARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQVE 172
Query: 387 VMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNP 424
+ M HYM M P P ++P
Sbjct: 173 FLSMKLATMNPQLDFDSHYMPSKDMSHMPVPAYPSSDP 210
>gi|116787019|gb|ABK24344.1| unknown [Picea sitchensis]
Length = 467
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN++M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 298 ARRGQATDSHSLAERVRREKINQRMKFLQDLVPTCNKVTGKAVMLDEIINYVQSLQHQVE 357
Query: 387 VMWM 390
+ M
Sbjct: 358 FLSM 361
>gi|242049812|ref|XP_002462650.1| hypothetical protein SORBIDRAFT_02g029530 [Sorghum bicolor]
gi|241926027|gb|EER99171.1| hypothetical protein SORBIDRAFT_02g029530 [Sorghum bicolor]
Length = 281
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 16/136 (11%)
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKR-KSRDAVDSECQSEAAGFESGAGNKTAQRS 325
+P S+S S S + SK+ST KR +S VD E E G+
Sbjct: 62 KPREDSASFSSAHSKDSNSKESTKKKGGKRDRSSKEVDEE---EPKGY----------IH 108
Query: 326 GSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQ 384
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q
Sbjct: 109 VRARRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALILDEIINYVQSLQNQ 168
Query: 385 LQVMWMG-SGMAPLMF 399
++ + M + ++P+++
Sbjct: 169 VEFLSMRIASLSPVLY 184
>gi|225458820|ref|XP_002283302.1| PREDICTED: transcription factor bHLH84 [Vitis vinifera]
Length = 380
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 10/92 (10%)
Query: 318 GNKTAQRSGSCRRSR--AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G+ +G R SR A + +L R+RR+RINE++R LQ L+P+ K D ++ML+EA+
Sbjct: 277 GSAALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAV 336
Query: 376 EYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
Y+K LQLQ+++ MWM AP+ + GM
Sbjct: 337 HYVKFLQLQIKLLSSDDMWM---YAPIAYNGM 365
>gi|147805319|emb|CAN71946.1| hypothetical protein VITISV_007899 [Vitis vinifera]
Length = 380
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 10/92 (10%)
Query: 318 GNKTAQRSGSCRRSR--AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G+ +G R SR A + +L R+RR+RINE++R LQ L+P+ K D ++ML+EA+
Sbjct: 277 GSAALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAV 336
Query: 376 EYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
Y+K LQLQ+++ MWM AP+ + GM
Sbjct: 337 HYVKFLQLQIKLLSSDDMWM---YAPIAYNGM 365
>gi|388499536|gb|AFK37834.1| unknown [Lotus japonicus]
Length = 493
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 292 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVRSLQRQVE 351
Query: 387 VMWM 390
+ M
Sbjct: 352 FLSM 355
>gi|297838663|ref|XP_002887213.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333054|gb|EFH63472.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 487
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 78/156 (50%), Gaps = 41/156 (26%)
Query: 271 TSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSEC-------QSEAAGFESG------- 316
T SSGG+G TS N+ KRK V+SE QSE +G
Sbjct: 218 TQSSGGNGRKGRETSS-----NTKKRKRNGQVNSEAAQSHRSQQSEEEPDNNGDKKRNSE 272
Query: 317 -----AGNKT--AQRSGS--------------CRRSRAAEVHNLSERRRRDRINEKMRAL 355
GNKT +R G RR +A H+L+ER RR++I+E+M+ L
Sbjct: 273 QSPNSPGNKTNSGKRQGKQSSDLPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFL 332
Query: 356 QELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
Q+L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 333 QDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSM 368
>gi|449454949|ref|XP_004145216.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 340
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 27/165 (16%)
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
R K +G L+ K +D+ D G T RR +A + H+L+ER
Sbjct: 118 RDQKAKSGKKLLEEKLKDSED-------------GGATTGYIHVRARRGQATDSHSLAER 164
Query: 343 RRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMFP 400
RR++I+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++ + M + + P+ F
Sbjct: 165 VRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFF- 223
Query: 401 GMQHYMSRMGMGMGP---------PPLPSVTNPMHFSRVPLVDQS 436
M G+ + P P LP++ S+ L+D +
Sbjct: 224 --DFRMDLDGLMIQPETTSLSSITPTLPAMAQCSVVSQPALIDTT 266
>gi|357167346|ref|XP_003581118.1| PREDICTED: transcription factor bHLH62-like [Brachypodium
distachyon]
Length = 407
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR RI+E+M+ LQ L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 249 ARRGQATDSHSLAERVRRKRISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQVE 308
Query: 387 VMWM 390
+ M
Sbjct: 309 FLSM 312
>gi|357148647|ref|XP_003574844.1| PREDICTED: transcription factor bHLH137-like [Brachypodium
distachyon]
Length = 294
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 127 ARRGQATDSHSLAERVRRERISERMRLLQTLVPGCDKVTGKALILDEIINYVQSLQNQVE 186
Query: 387 VMWMG-SGMAPLMF 399
+ M + M+P+++
Sbjct: 187 FLSMRIASMSPVLY 200
>gi|18378953|ref|NP_563650.1| transcription factor HFR1 [Arabidopsis thaliana]
gi|20532238|sp|Q9FE22.1|HFR1_ARATH RecName: Full=Transcription factor HFR1; AltName: Full=Basic
helix-loop-helix protein 26; Short=AtbHLH26; Short=bHLH
26; AltName: Full=Protein LONG HYPOCOTYL IN FAR-RED 1;
AltName: Full=Protein REDUCED PHYTOCHROME SIGNALING;
AltName: Full=Reduced sensitivity to far-red light;
AltName: Full=Transcription factor EN 68; AltName:
Full=bHLH transcription factor bHLH026
gi|11870115|gb|AAG40617.1|AF324245_1 bHLH-like protein HFR1 [Arabidopsis thaliana]
gi|12025106|gb|AAG45733.1|AF288287_1 reduced phytochrome signaling 1 [Arabidopsis thaliana]
gi|13183644|gb|AAK15282.1|AF323182_1 basic helix-loop-helix FBI1 protein [Arabidopsis thaliana]
gi|332189297|gb|AEE27418.1| transcription factor HFR1 [Arabidopsis thaliana]
Length = 292
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 8/75 (10%)
Query: 340 SERRRRD-RINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLM 398
S+RRRRD +++ KMR LQ+L+P+C+KTDK S+LD+ IEY+K+LQLQLQ+M G+ P
Sbjct: 141 SKRRRRDEKMSNKMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQLQLQMM-STVGVNPYF 199
Query: 399 FPGMQHYMSRMGMGM 413
P +G GM
Sbjct: 200 LPAT------LGFGM 208
>gi|356527316|ref|XP_003532257.1| PREDICTED: transcription factor bHLH62-like [Glycine max]
Length = 586
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 388 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 447
Query: 387 VMWM 390
+ M
Sbjct: 448 FLSM 451
>gi|356538777|ref|XP_003537877.1| PREDICTED: transcription factor bHLH49-like [Glycine max]
Length = 420
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 253 KVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAG 312
KV++ S+ + + ++ S G +TS ++ N+ K +R+ +E + +
Sbjct: 141 KVVAASDNKQDKRVK---ASGEEGESKVTEQTSNKNGKSNANKNNNRETTSAETSKDNSK 197
Query: 313 FESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASML 371
K RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA ML
Sbjct: 198 GSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGML 257
Query: 372 DEAIEYLKSLQLQLQVMWM 390
DE I Y++SLQ Q++ + M
Sbjct: 258 DEIINYVQSLQRQVEFLSM 276
>gi|147786897|emb|CAN73299.1| hypothetical protein VITISV_005183 [Vitis vinifera]
Length = 569
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 374 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 433
Query: 387 VMWMG-SGMAPLMFPGMQHYMSR 408
+ M + + P M M+ +S+
Sbjct: 434 FLSMKLATVNPRMDFNMEALLSK 456
>gi|359477937|ref|XP_002264969.2| PREDICTED: transcription factor bHLH62-like [Vitis vinifera]
Length = 569
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 374 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 433
Query: 387 VMWMG-SGMAPLMFPGMQHYMSR 408
+ M + + P M M+ +S+
Sbjct: 434 FLSMKLATVNPRMDFNMEALLSK 456
>gi|357440189|ref|XP_003590372.1| Transcription factor BEE [Medicago truncatula]
gi|355479420|gb|AES60623.1| Transcription factor BEE [Medicago truncatula]
Length = 326
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 310 AAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KA 368
AA SG G + RR +A + H+L+ER RR++IN +M+ LQEL+P CNK A
Sbjct: 144 AADENSGNGEELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTA 203
Query: 369 SMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHF 427
+LD+ I +++SLQ +++++ M + + P++ + ++ GM + P+ +P +
Sbjct: 204 LVLDKIINHVQSLQHEVEILSMKLAAVNPIIDFNLDSILAAEGMSLMDSNFPNTVSPAVW 263
Query: 428 SRVP 431
+P
Sbjct: 264 PEIP 267
>gi|224065260|ref|XP_002301743.1| predicted protein [Populus trichocarpa]
gi|222843469|gb|EEE81016.1| predicted protein [Populus trichocarpa]
Length = 225
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 11/139 (7%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 29 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 88
Query: 387 VMWMG-SGMAPLMFPGMQHYM------SRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSM 439
+ M + + P M M+ ++ SR M G PL S T + Q +++
Sbjct: 89 FLSMKMATVNPKMEINMETFLSKDIFQSRGSMPHGLYPLDSSTPAFPYGYQS--QQGLAL 146
Query: 440 AQAQNRAVMCQASVLNPVN 458
+R Q S +NP+N
Sbjct: 147 QDGMSRNAESQFS-MNPLN 164
>gi|414865636|tpg|DAA44193.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 275
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 21/151 (13%)
Query: 244 SSGLNDDVRKV---ISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRD 300
SS L VRK+ I+ S R PTV + G + ++L+R+
Sbjct: 60 SSSLRSLVRKLEASIAFSHRITLPLFHPTVHVNVLLQGET-----------SALQRE--- 105
Query: 301 AVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIP 360
V EC E AG + +R +A H+L+ER RR++INE+M+ LQ+L+P
Sbjct: 106 -VSMECADEKAG--DARAKREDYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVP 162
Query: 361 HCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 163 GCNKITGKAMMLDEIINYVQSLQRQIEFLSM 193
>gi|414589941|tpg|DAA40512.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 295
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 113 ARRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALVLDEIINYVQSLQNQVE 172
Query: 387 VMWMG-SGMAPLMF 399
+ M + ++P+++
Sbjct: 173 FLSMKIASLSPVLY 186
>gi|302774124|ref|XP_002970479.1| hypothetical protein SELMODRAFT_93546 [Selaginella moellendorffii]
gi|302793582|ref|XP_002978556.1| hypothetical protein SELMODRAFT_108937 [Selaginella moellendorffii]
gi|300153905|gb|EFJ20542.1| hypothetical protein SELMODRAFT_108937 [Selaginella moellendorffii]
gi|300161995|gb|EFJ28609.1| hypothetical protein SELMODRAFT_93546 [Selaginella moellendorffii]
Length = 125
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEA 374
GAGN RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE
Sbjct: 23 GAGNTQDYIHVRARRGQATDSHSLAERVRREKISERMKTLQDLVPGCSKVTGKAMMLDEI 82
Query: 375 IEYLKSLQLQLQVMWMG-SGMAPLMF 399
I Y++SLQ Q++ + M + + P ++
Sbjct: 83 INYVQSLQRQVEFLSMKLAAVKPALY 108
>gi|224136304|ref|XP_002322296.1| predicted protein [Populus trichocarpa]
gi|222869292|gb|EEF06423.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 66/100 (66%), Gaps = 6/100 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 176 ARRGQATDSHSLAERVRRERISERMKILQLLVPGCDKITGKALMLDEIINYVQSLQNQVE 235
Query: 387 VMWMG-SGMAPLMFP-GMQH--YMSR-MGMGMGPPPLPSV 421
+ M + + PL++ GM +M R + PPLPS+
Sbjct: 236 FLSMKLASVNPLLYDFGMDRDAFMVRPERLSSMSPPLPSL 275
>gi|224133354|ref|XP_002321546.1| predicted protein [Populus trichocarpa]
gi|222868542|gb|EEF05673.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 17/102 (16%)
Query: 303 DSECQSEAAGFESGAGNKTAQRSGS-------------CRRSRAAEVHNLSERRRRDRIN 349
DS ++EA+ S A NKTA++S RR +A + H+L+ER RR++I+
Sbjct: 51 DSRAETEAS---SAANNKTAEQSSKPSEPPKQDYIHVRARRGQATDSHSLAERARREKIS 107
Query: 350 EKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM 390
E+M LQ+L+P CNK KA +LDE I Y++SLQ Q++ + M
Sbjct: 108 ERMNMLQDLVPGCNKVIGKALVLDEIINYIQSLQCQVEFLSM 149
>gi|326519344|dbj|BAJ96671.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 279
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+LSER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 107 ARRGQATDSHSLSERVRRERISERMRMLQSLVPGCDKVTGKALILDEIINYVRSLQNQVE 166
Query: 387 VMWMG-SGMAPLMF 399
+ M + ++P+++
Sbjct: 167 FLSMRIASLSPVVY 180
>gi|356509797|ref|XP_003523632.1| PREDICTED: transcription factor bHLH74-like [Glycine max]
Length = 376
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDKASMLD 372
ES G+K RR +A H+L+ER RR++I+E+MR LQEL+P C+ KT KA MLD
Sbjct: 219 ESEEGSKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKKTGKAVMLD 278
Query: 373 EAIEYLKSLQLQLQVMWM 390
E I Y++SLQ Q++ + M
Sbjct: 279 EIINYVQSLQQQVEFLSM 296
>gi|212721128|ref|NP_001132785.1| uncharacterized protein LOC100194274 [Zea mays]
gi|194695392|gb|ACF81780.1| unknown [Zea mays]
gi|414589942|tpg|DAA40513.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 305
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 123 ARRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALVLDEIINYVQSLQNQVE 182
Query: 387 VMWMG-SGMAPLMF 399
+ M + ++P+++
Sbjct: 183 FLSMKIASLSPVLY 196
>gi|297744394|emb|CBI37656.3| unnamed protein product [Vitis vinifera]
Length = 345
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 8/112 (7%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 148 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEF 207
Query: 388 MWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSV------TNPMHFSRVPL 432
+ M + + P + + +++++ P++ TNP + P+
Sbjct: 208 LSMKLAAVNPRLDFNIDNFLAKEVFPACAANFPTIGMSSEMTNPSYLHYDPI 259
>gi|298205236|emb|CBI17295.3| unnamed protein product [Vitis vinifera]
Length = 457
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 265 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 324
Query: 387 VMWMG-SGMAPLMFPGMQHYMSR 408
+ M + + P M M+ +S+
Sbjct: 325 FLSMKLATVNPRMDFNMEALLSK 347
>gi|15221563|ref|NP_177058.1| transcription factor bHLH49 [Arabidopsis thaliana]
gi|79590003|ref|NP_849863.2| transcription factor bHLH49 [Arabidopsis thaliana]
gi|75333634|sp|Q9CAA9.1|BH049_ARATH RecName: Full=Transcription factor bHLH49; AltName: Full=Basic
helix-loop-helix protein 49; Short=AtbHLH49; Short=bHLH
49; AltName: Full=Transcription factor EN 82; AltName:
Full=bHLH transcription factor bHLH049
gi|12323211|gb|AAG51583.1|AC011665_4 putative DNA-binding protein [Arabidopsis thaliana]
gi|22135841|gb|AAM91106.1| At1g68920/T6L1_10 [Arabidopsis thaliana]
gi|25090290|gb|AAN72270.1| At1g68920/T6L1_10 [Arabidopsis thaliana]
gi|332196740|gb|AEE34861.1| transcription factor bHLH49 [Arabidopsis thaliana]
gi|332196741|gb|AEE34862.1| transcription factor bHLH49 [Arabidopsis thaliana]
Length = 486
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 305 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 364
Query: 387 VMWM 390
+ M
Sbjct: 365 FLSM 368
>gi|255587658|ref|XP_002534345.1| transcription factor, putative [Ricinus communis]
gi|223525454|gb|EEF28039.1| transcription factor, putative [Ricinus communis]
Length = 554
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 352 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 411
Query: 387 VMWM 390
+ M
Sbjct: 412 FLSM 415
>gi|356566230|ref|XP_003551337.1| PREDICTED: transcription factor bHLH62-like [Glycine max]
Length = 585
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 387 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 446
Query: 387 VMWM 390
+ M
Sbjct: 447 FLSM 450
>gi|226504718|ref|NP_001150409.1| LOC100284039 [Zea mays]
gi|195639036|gb|ACG38986.1| protein SPATULA [Zea mays]
gi|414873439|tpg|DAA51996.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 255
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y++SLQ Q++
Sbjct: 128 ARRGQATDSHSLAERARREKISERMKVLQDLVPGCNKVIGKASVLDEIINYIQSLQCQVE 187
Query: 387 VMWM 390
+ M
Sbjct: 188 FLSM 191
>gi|242086066|ref|XP_002443458.1| hypothetical protein SORBIDRAFT_08g019780 [Sorghum bicolor]
gi|241944151|gb|EES17296.1| hypothetical protein SORBIDRAFT_08g019780 [Sorghum bicolor]
Length = 316
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 13/116 (11%)
Query: 303 DSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
DS E+A + A + + G RS E ++ R+RR+RINE+++ LQ L+P+
Sbjct: 203 DSNASLESADGDGDADARRPKGKGRAGRSATTEPQSIYARKRRERINERLKILQNLVPNG 262
Query: 363 NKTDKASMLDEAIEYLKSLQLQLQVM-----WMGSGMAPLMFPGMQHYMSRMGMGM 413
K D ++ML+EA+ Y+K LQLQ++++ WM AP+ + GM +G+G+
Sbjct: 263 TKVDISTMLEEAVHYVKFLQLQIRLLSSDDTWM---YAPIAYNGMN-----IGIGI 310
>gi|356558973|ref|XP_003547776.1| PREDICTED: transcription factor bHLH62-like [Glycine max]
Length = 548
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 341 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 400
Query: 387 VMWM 390
+ M
Sbjct: 401 FLSM 404
>gi|358347900|ref|XP_003637988.1| Transcription factor BPE [Medicago truncatula]
gi|355503923|gb|AES85126.1| Transcription factor BPE [Medicago truncatula]
Length = 249
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 13/103 (12%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
Query: 387 VMWMGSGMAPLMFPGMQHYMSRMGMGMG--PPPLPSVTNPMHF 427
+ M ++ SR+ G+ PP SV +P+ F
Sbjct: 213 FLSM----------KLEAVNSRLNTGIEAFPPKDVSVKHPLIF 245
>gi|218187187|gb|EEC69614.1| hypothetical protein OsI_38988 [Oryza sativa Indica Group]
Length = 271
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 291 DNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINE 350
D+S +R + D V ++ G S + + + + + R SR ++ H+L+ER+RR +INE
Sbjct: 77 DDSGERWTEDQVPTDEGICVMGRRSESSKERRKITRARRSSRYSQTHSLTERKRRCKINE 136
Query: 351 KMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 396
++ LQ+L+P C+K+ ++AS LD+ I Y+KSLQ +Q M +G M P
Sbjct: 137 NLKTLQQLVPGCDKSNNQASTLDKTIRYMKSLQQHVQAMSVGCIMKP 183
>gi|357513299|ref|XP_003626938.1| BHLH transcription factor [Medicago truncatula]
gi|355520960|gb|AET01414.1| BHLH transcription factor [Medicago truncatula]
Length = 498
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 293 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 352
Query: 387 VMWM 390
+ M
Sbjct: 353 FLSM 356
>gi|226500746|ref|NP_001149110.1| LOC100282732 [Zea mays]
gi|195624818|gb|ACG34239.1| bHLH transcription factor GBOF-1 [Zea mays]
Length = 287
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 113 ARRGQATDNHSLAERVRRERISERMRVLQALVPGCDKVTGKALILDEIINYVQSLQNQVE 172
Query: 387 VMWMG-SGMAPLMF 399
+ M + ++P+++
Sbjct: 173 FLSMRIASLSPVLY 186
>gi|414869721|tpg|DAA48278.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 314
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 141 ARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVE 200
Query: 387 VMWMG-SGMAPLMF 399
+ M + M+P+++
Sbjct: 201 FLSMRIASMSPVLY 214
>gi|255543699|ref|XP_002512912.1| conserved hypothetical protein [Ricinus communis]
gi|223547923|gb|EEF49415.1| conserved hypothetical protein [Ricinus communis]
Length = 444
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 68/112 (60%), Gaps = 8/112 (7%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 237 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEF 296
Query: 388 MWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSV------TNPMHFSRVPL 432
+ M + + P + + + +++ P P++ TNP + P+
Sbjct: 297 LSMKLAAVNPRLDFNIDNLIAKETFPPCPTNFPAIGLSSDMTNPAYLQFNPV 348
>gi|326523695|dbj|BAJ93018.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 417
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I E+M+ LQ L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 260 ARRGQATDSHSLAERVRREKIGERMKLLQSLVPSCNKITGKALMLDEIINYVQSLQRQVE 319
Query: 387 VMWM 390
+ M
Sbjct: 320 FLSM 323
>gi|226496555|ref|NP_001150926.1| bHLH transcription factor GBOF-1 [Zea mays]
gi|195642998|gb|ACG40967.1| bHLH transcription factor GBOF-1 [Zea mays]
Length = 306
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 122 ARRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALVLDEIINYVQSLQNQVE 181
Query: 387 VMWMG-SGMAPLMF 399
+ M + ++P+++
Sbjct: 182 FLSMKIASLSPVLY 195
>gi|357161826|ref|XP_003579215.1| PREDICTED: transcription factor bHLH139-like [Brachypodium
distachyon]
Length = 301
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 10/84 (11%)
Query: 326 GSCRRSRAAEV--HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
G R +R A +L R+RR+RINE+++ LQ L+P+ K D ++ML+EA+ Y+K LQL
Sbjct: 213 GKARAARGASTDPQSLYARKRRERINERLKTLQTLVPNGTKVDMSTMLEEAVHYVKFLQL 272
Query: 384 QLQV-----MWMGSGMAPLMFPGM 402
Q++V MWM APL + GM
Sbjct: 273 QIKVLSSDDMWM---YAPLAYNGM 293
>gi|356503048|ref|XP_003520324.1| PREDICTED: transcription factor bHLH62-like [Glycine max]
Length = 582
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 374 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 433
Query: 387 VMWM 390
+ M
Sbjct: 434 FLSM 437
>gi|20127064|gb|AAM10951.1|AF488595_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 450
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 254 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 313
Query: 387 VMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNR 445
+ M S + + M +S+ PS N MH +V +D S +
Sbjct: 314 FLSMKLSSVNTRLDFNMDALLSK-------DIFPSSNNLMHHQQVLQLDSSAETLLGDHH 366
Query: 446 AVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQAN 484
Q LNP N + N T + ++ P A+
Sbjct: 367 NKNLQ---LNPDISSNNVINPLETSETRSFISHLPTLAH 402
>gi|15231450|ref|NP_187390.1| transcription factor bHLH62 [Arabidopsis thaliana]
gi|75313804|sp|Q9SRT2.1|BH062_ARATH RecName: Full=Transcription factor bHLH62; AltName: Full=Basic
helix-loop-helix protein 62; Short=AtbHLH62; Short=bHLH
62; AltName: Full=Transcription factor EN 85; AltName:
Full=bHLH transcription factor bHLH062
gi|6041855|gb|AAF02164.1|AC009853_24 unknown protein [Arabidopsis thaliana]
gi|51968880|dbj|BAD43132.1| putative bHLH transcription factor (bHLH062) [Arabidopsis thaliana]
gi|51969134|dbj|BAD43259.1| putative bHLH transcription factor (bHLH062) [Arabidopsis thaliana]
gi|111074462|gb|ABH04604.1| At3g07340 [Arabidopsis thaliana]
gi|332641009|gb|AEE74530.1| transcription factor bHLH62 [Arabidopsis thaliana]
Length = 456
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 9/111 (8%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 260 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 319
Query: 387 VMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQS 436
+ M S + + M +S+ PS N MH +V +D S
Sbjct: 320 FLSMKLSSVNTRLDFNMDALLSK-------DIFPSSNNLMHHQQVLQLDSS 363
>gi|238009798|gb|ACR35934.1| unknown [Zea mays]
Length = 287
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 113 ARRGQATDNHSLAERVRRERISERMRVLQALVPGCDKVTGKALILDEIINYVQSLQNQVE 172
Query: 387 VMWMG-SGMAPLMF 399
+ M + ++P+++
Sbjct: 173 FLSMRIASLSPVLY 186
>gi|308080104|ref|NP_001183737.1| uncharacterized protein LOC100502330 [Zea mays]
gi|238014262|gb|ACR38166.1| unknown [Zea mays]
gi|413921691|gb|AFW61623.1| putative HLH DNA-binding domain superfamily protein isoform 1 [Zea
mays]
gi|413921692|gb|AFW61624.1| putative HLH DNA-binding domain superfamily protein isoform 2 [Zea
mays]
Length = 319
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 133 ARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKAMVLDEIINYVQSLQNQVE 192
Query: 387 VMWMG-SGMAPLMF 399
+ M + M+P+++
Sbjct: 193 FLSMRIASMSPVLY 206
>gi|51971323|dbj|BAD44326.1| putative bHLH transcription factor (bHLH062) [Arabidopsis thaliana]
gi|51971523|dbj|BAD44426.1| putative bHLH transcription factor (bHLH062) [Arabidopsis thaliana]
Length = 456
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 9/111 (8%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 260 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 319
Query: 387 VMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQS 436
+ M S + + M +S+ PS N MH +V +D S
Sbjct: 320 FLSMKLSSVNTRLDFNMDALLSK-------DIFPSSNNLMHHQQVLQLDSS 363
>gi|125562347|gb|EAZ07795.1| hypothetical protein OsI_30053 [Oryza sativa Indica Group]
gi|125604159|gb|EAZ43484.1| hypothetical protein OsJ_28098 [Oryza sativa Japonica Group]
Length = 291
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 125 ARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVE 184
Query: 387 VMWMG-SGMAPLMF 399
+ M + M+P+++
Sbjct: 185 FLSMRIASMSPVLY 198
>gi|296083058|emb|CBI22462.3| unnamed protein product [Vitis vinifera]
Length = 350
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 8/78 (10%)
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-- 387
R A + +L R+RR+RINE+++ LQ L+P+ K D ++ML+EA+EY+K LQLQ+++
Sbjct: 263 RGSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLS 322
Query: 388 ---MWMGSGMAPLMFPGM 402
+WM APL + GM
Sbjct: 323 SDDLWM---YAPLAYNGM 337
>gi|357444407|ref|XP_003592481.1| Transcription factor bHLH84 [Medicago truncatula]
gi|355481529|gb|AES62732.1| Transcription factor bHLH84 [Medicago truncatula]
Length = 287
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 57/84 (67%), Gaps = 13/84 (15%)
Query: 329 RRSRAA-----EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R+SRAA + ++ R+RR+RINE++R LQ L+P+ K D ++ML+EA++Y+K LQL
Sbjct: 194 RKSRAASSPATDAQSIYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQL 253
Query: 384 QLQV-----MWMGSGMAPLMFPGM 402
Q+++ MWM AP+ + GM
Sbjct: 254 QIKLLSSEDMWM---YAPIAYNGM 274
>gi|110741191|dbj|BAF02146.1| bHLH transcription factor like protein [Arabidopsis thaliana]
Length = 366
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQEL P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 208 ARRGQATNSHSLAERVRREKISERMRLLQELAPGCNKITGKAVMLDEIINYVQSLQQQVE 267
Query: 387 VMWM 390
+ M
Sbjct: 268 FLSM 271
>gi|225428454|ref|XP_002284113.1| PREDICTED: transcription factor bHLH63-like [Vitis vinifera]
Length = 456
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 259 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEF 318
Query: 388 MWM 390
+ M
Sbjct: 319 LSM 321
>gi|302142209|emb|CBI19412.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 10/92 (10%)
Query: 318 GNKTAQRSGSCRRSR--AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G+ +G R SR A + +L R+RR+RINE++R LQ L+P+ K D ++ML+EA+
Sbjct: 83 GSAALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAV 142
Query: 376 EYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
Y+K LQLQ+++ MWM AP+ + GM
Sbjct: 143 HYVKFLQLQIKLLSSDDMWM---YAPIAYNGM 171
>gi|224069890|ref|XP_002303073.1| predicted protein [Populus trichocarpa]
gi|222844799|gb|EEE82346.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 360 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 419
Query: 387 VMWM 390
+ M
Sbjct: 420 FLSM 423
>gi|297836114|ref|XP_002885939.1| basic helix-loop-helix protein [Arabidopsis lyrata subsp. lyrata]
gi|297331779|gb|EFH62198.1| basic helix-loop-helix protein [Arabidopsis lyrata subsp. lyrata]
Length = 328
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 10/96 (10%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEV--HNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
E G +K +G R SR A +L R+RR+RINE++R LQ L+P+ K ++ML
Sbjct: 223 EDGEDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVHISTML 282
Query: 372 DEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
+EA++Y+K LQLQ+++ +WM AP+ + GM
Sbjct: 283 EEAVQYVKFLQLQIKLLSSDDLWM---YAPIAYNGM 315
>gi|449533331|ref|XP_004173629.1| PREDICTED: transcription factor bHLH63-like [Cucumis sativus]
Length = 456
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 252 RRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEF 311
Query: 388 MWM 390
+ M
Sbjct: 312 LSM 314
>gi|255550670|ref|XP_002516384.1| transcription factor, putative [Ricinus communis]
gi|223544482|gb|EEF46001.1| transcription factor, putative [Ricinus communis]
Length = 534
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 348 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 407
Query: 387 VMWM 390
+ M
Sbjct: 408 FLSM 411
>gi|413924221|gb|AFW64153.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 230
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 308 SEAAGFES--GAGNKTAQRSG-SCRRSRAAEVHNLS-ERRRRDRINEKMRALQELIPHCN 363
++ A F+S AG A +G AA VH + RR+RI E+M+ALQEL+P+ N
Sbjct: 102 TDRAAFKSPNAAGADQALYNGFGAAGMHAAAVHQPPFGQLRRERIAERMKALQELVPNAN 161
Query: 364 KTDKASMLDEAIEYLKSLQLQLQVMWM 390
KTDKASMLDE I+Y+K LQLQ++V+ M
Sbjct: 162 KTDKASMLDEIIDYVKFLQLQVKVLSM 188
>gi|449461645|ref|XP_004148552.1| PREDICTED: transcription factor bHLH63-like [Cucumis sativus]
Length = 523
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 252 RRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEF 311
Query: 388 MWM 390
+ M
Sbjct: 312 LSM 314
>gi|77556450|gb|ABA99246.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|218187186|gb|EEC69613.1| hypothetical protein OsI_38987 [Oryza sativa Indica Group]
gi|222617411|gb|EEE53543.1| hypothetical protein OsJ_36752 [Oryza sativa Japonica Group]
Length = 265
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 334 AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMW 389
AE H L+E+RRR RINEK + LQ L+P C+K ++S LD I Y+KSLQ QLQ M+
Sbjct: 154 AETHGLTEKRRRSRINEKFKMLQRLVPGCDKCSQSSTLDRTIHYMKSLQQQLQAMY 209
>gi|15239013|ref|NP_199667.1| transcription factor bHLH78 [Arabidopsis thaliana]
gi|75309142|sp|Q9FJL4.1|BH078_ARATH RecName: Full=Transcription factor bHLH78; AltName: Full=Basic
helix-loop-helix protein 78; Short=AtbHLH78; Short=bHLH
78; AltName: Full=Transcription factor EN 86; AltName:
Full=bHLH transcription factor bHLH078
gi|10177346|dbj|BAB10689.1| unnamed protein product [Arabidopsis thaliana]
gi|27754625|gb|AAO22758.1| unknown protein [Arabidopsis thaliana]
gi|28973465|gb|AAO64057.1| unknown protein [Arabidopsis thaliana]
gi|332008305|gb|AED95688.1| transcription factor bHLH78 [Arabidopsis thaliana]
Length = 498
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 303 ARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 362
Query: 387 VMWM 390
+ M
Sbjct: 363 FLSM 366
>gi|356517054|ref|XP_003527205.1| PREDICTED: transcription factor bHLH63-like [Glycine max]
Length = 384
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 188 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVEF 247
Query: 388 MWM 390
+ M
Sbjct: 248 LSM 250
>gi|224105381|ref|XP_002313791.1| predicted protein [Populus trichocarpa]
gi|222850199|gb|EEE87746.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 240 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEF 299
Query: 388 MWM 390
+ M
Sbjct: 300 LSM 302
>gi|297833524|ref|XP_002884644.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330484|gb|EFH60903.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 456
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 9/111 (8%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 260 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 319
Query: 387 VMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQS 436
+ M S + + M +S+ PS N MH V +D S
Sbjct: 320 FLSMKLSSVNTRLDFNMDALLSK-------DIFPSSNNLMHHQHVLQLDSS 363
>gi|242032639|ref|XP_002463714.1| hypothetical protein SORBIDRAFT_01g004710 [Sorghum bicolor]
gi|241917568|gb|EER90712.1| hypothetical protein SORBIDRAFT_01g004710 [Sorghum bicolor]
Length = 253
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y++SLQ Q++
Sbjct: 126 ARRGQATDSHSLAERARREKISERMKVLQDLVPGCNKVIGKASVLDEIINYIQSLQCQVE 185
Query: 387 VMWM 390
+ M
Sbjct: 186 FLSM 189
>gi|147866312|emb|CAN79863.1| hypothetical protein VITISV_021999 [Vitis vinifera]
Length = 346
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 8/78 (10%)
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-- 387
R A + +L R+RR+RINE+++ LQ L+P+ K D ++ML+EA+EY+K LQLQ+++
Sbjct: 259 RGSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLS 318
Query: 388 ---MWMGSGMAPLMFPGM 402
+WM APL + GM
Sbjct: 319 SDDLWM---YAPLAYNGM 333
>gi|356516503|ref|XP_003526933.1| PREDICTED: transcription factor bHLH77-like [Glycine max]
Length = 320
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 8/104 (7%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 166 ARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVE 225
Query: 387 VMWMGSGMAPLMFPGMQHYMS-------RMGMGMGPPPLPSVTN 423
+ M MF + + ++ P PLPS+++
Sbjct: 226 FLSMKLASVNPMFYDLATDLDTLLVRPEKLNSMASPSPLPSMSH 269
>gi|297792043|ref|XP_002863906.1| hypothetical protein ARALYDRAFT_494918 [Arabidopsis lyrata subsp.
lyrata]
gi|297309741|gb|EFH40165.1| hypothetical protein ARALYDRAFT_494918 [Arabidopsis lyrata subsp.
lyrata]
Length = 498
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 301 ARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 360
Query: 387 VMWM 390
+ M
Sbjct: 361 FLSM 364
>gi|225428979|ref|XP_002264083.1| PREDICTED: transcription factor bHLH84-like [Vitis vinifera]
Length = 345
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 8/78 (10%)
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-- 387
R A + +L R+RR+RINE+++ LQ L+P+ K D ++ML+EA+EY+K LQLQ+++
Sbjct: 258 RGSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLS 317
Query: 388 ---MWMGSGMAPLMFPGM 402
+WM APL + GM
Sbjct: 318 SDDLWM---YAPLAYNGM 332
>gi|242082133|ref|XP_002445835.1| hypothetical protein SORBIDRAFT_07g026610 [Sorghum bicolor]
gi|241942185|gb|EES15330.1| hypothetical protein SORBIDRAFT_07g026610 [Sorghum bicolor]
Length = 397
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 195 ARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVE 254
Query: 387 VMWM 390
+ M
Sbjct: 255 FLSM 258
>gi|357473295|ref|XP_003606932.1| BHLH transcription factor [Medicago truncatula]
gi|355507987|gb|AES89129.1| BHLH transcription factor [Medicago truncatula]
Length = 344
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
+ ++Q G+ + K K+R+ D E + +K RR +A + H+L+ER
Sbjct: 100 KITEQIKGNKNTKLKNRENCDDVGSKENSKGSEIQNHKPDYIHVRARRGQATDSHSLAER 159
Query: 343 RRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM 390
RR++I+E+M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++ + M
Sbjct: 160 VRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSM 208
>gi|290767965|gb|ADD60674.1| putative TA1 protein [Oryza granulata]
Length = 430
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 22/229 (9%)
Query: 174 NLGDLGKLVNFSQSTAPPKGE----LGPCSGQFDRKRSGNLTQGEVRECSMMTV-GSSHC 228
N G+LG ++N S + P G+ + PCS + E C +++ G
Sbjct: 100 NGGNLGAMINHSFPSTQPLGDFQNGIEPCS---------EIEAIESEGCKNVSLTGEKQQ 150
Query: 229 GSNQVAYDLDMSRASSS------GLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFN 282
G ++ + +D S S G D +S S++ K V GG +
Sbjct: 151 GDAEMTHAVDSSSKELSKPECVGGAGRDEGTRVSCSKKRKRSIQHGGVKHVEGGEQLATM 210
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
++++ D + K R +V S ++ K RR +A H+L+ER
Sbjct: 211 AAAQKNENDEKYEPK-RSSVAPGKSSRKQAKDNAGSPKEEYIHVRARRGQATNSHSLAER 269
Query: 343 RRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++ + M
Sbjct: 270 VRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 318
>gi|20127085|gb|AAM10957.1|AF488610_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 498
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 303 ARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 362
Query: 387 VMWM 390
+ M
Sbjct: 363 FLSM 366
>gi|357152259|ref|XP_003576061.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 211
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 35 RRGQATDSHSLAERVRREKISERMKLLQDLVPSCNKVTGKAVMLDEIINYVQSLQRQVEF 94
Query: 388 MWM 390
+ M
Sbjct: 95 LSM 97
>gi|226498378|ref|NP_001148110.1| BHLH transcription factor [Zea mays]
gi|195615854|gb|ACG29757.1| BHLH transcription factor [Zea mays]
Length = 403
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 197 RRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEF 256
Query: 388 MWM 390
+ M
Sbjct: 257 LSM 259
>gi|294462520|gb|ADE76806.1| unknown [Picea sitchensis]
Length = 392
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I E+M+ LQ+L+P CNK T KA M+DE I Y++SLQ Q++
Sbjct: 221 RRGQATDRHSLAERVRREKIGERMKLLQDLVPGCNKITGKAVMVDEIINYVQSLQCQVEF 280
Query: 388 MWMG-SGMAPLMFPGMQHYMSR 408
+ M + P + M+ +++R
Sbjct: 281 LSMKLEAVNPKLACNMEGFLAR 302
>gi|388504626|gb|AFK40379.1| unknown [Medicago truncatula]
Length = 397
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 194 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQVEF 253
Query: 388 MWM 390
+ M
Sbjct: 254 LSM 256
>gi|357467301|ref|XP_003603935.1| Transcription factor BEE [Medicago truncatula]
gi|355492983|gb|AES74186.1| Transcription factor BEE [Medicago truncatula]
Length = 398
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 194 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQVEF 253
Query: 388 MWM 390
+ M
Sbjct: 254 LSM 256
>gi|449527227|ref|XP_004170614.1| PREDICTED: transcription factor bHLH62-like [Cucumis sativus]
Length = 450
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 256 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVE 315
Query: 387 VMWM 390
+ M
Sbjct: 316 FLSM 319
>gi|297843798|ref|XP_002889780.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335622|gb|EFH66039.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 140
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
Query: 287 QSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRD 346
QS D S K+ D E++ E K RR +A H+L+ER RR+
Sbjct: 11 QSGSDQSQKKHKNDQSKETMNKESSQNEEEPKEKYIHMRA--RRGQATNSHSLAERVRRE 68
Query: 347 RINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMFPGMQH 404
+I+E+MR LQEL+P CNK T KA MLDE I Y++SLQ Q++ + M + + P + +
Sbjct: 69 KISERMRLLQELVPGCNKITGKAFMLDEIINYIQSLQQQVEFLSMKLATVNPDINIDIDR 128
Query: 405 YMSRMGMGMGPP 416
+++ PP
Sbjct: 129 ILAKDVRAQNPP 140
>gi|449463525|ref|XP_004149484.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 533
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 343 ARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 402
Query: 387 VMWM 390
+ M
Sbjct: 403 FLSM 406
>gi|356516734|ref|XP_003527048.1| PREDICTED: transcription factor bHLH79-like [Glycine max]
Length = 269
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 33/156 (21%)
Query: 249 DDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQS 308
DD KV+S T T S+ SGS+ + G +S++ D +E ++
Sbjct: 68 DDCSKVLS-------STTTATANLSNNDSGSN----KQMKLGGSSVEN---DGFKAEAEA 113
Query: 309 EAAGFESGAGNKTAQRSGS-------------CRRSRAAEVHNLSERRRRDRINEKMRAL 355
+AG GNK++++S RR +A + H+L+ER RR++I+E+M+ L
Sbjct: 114 SSAG-----GNKSSEQSNKPCEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKIL 168
Query: 356 QELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM 390
Q+L+P CNK KA +LDE I Y++SLQ Q++ + M
Sbjct: 169 QDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 204
>gi|27311243|gb|AAO00689.1| Hypothetical protein [Oryza sativa Japonica Group]
Length = 776
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 305 ECQSEAAGFESGAGNKTAQRSGSCR--RSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
E E AG ++G + + + R R +A H+L+ER RR++INE+M+ LQ+L+P C
Sbjct: 605 ELSMEHAGEKAGDADASREEYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVPGC 664
Query: 363 NK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
NK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 665 NKITGKAMMLDEIINYVQSLQRQVEFLSM 693
>gi|449459842|ref|XP_004147655.1| PREDICTED: transcription factor bHLH78-like [Cucumis sativus]
gi|449525371|ref|XP_004169691.1| PREDICTED: transcription factor bHLH78-like [Cucumis sativus]
Length = 546
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+++M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 355 ARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 414
Query: 387 VMWM 390
+ M
Sbjct: 415 FLSM 418
>gi|115480081|ref|NP_001063634.1| Os09g0510500 [Oryza sativa Japonica Group]
gi|113631867|dbj|BAF25548.1| Os09g0510500 [Oryza sativa Japonica Group]
gi|125606291|gb|EAZ45327.1| hypothetical protein OsJ_29973 [Oryza sativa Japonica Group]
gi|215694666|dbj|BAG89857.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 282
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 109 ARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVE 168
Query: 387 VMWMG-SGMAPLMF 399
+ M + ++P+++
Sbjct: 169 FLSMRIASLSPVLY 182
>gi|218192387|gb|EEC74814.1| hypothetical protein OsI_10634 [Oryza sativa Indica Group]
gi|222624516|gb|EEE58648.1| hypothetical protein OsJ_10029 [Oryza sativa Japonica Group]
Length = 307
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 305 ECQSEAAGFESGAGNKTAQRSGSCR--RSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
E E AG ++G + + + R R +A H+L+ER RR++INE+M+ LQ+L+P C
Sbjct: 102 ELSMEHAGEKAGDADASREEYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVPGC 161
Query: 363 NK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
NK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 162 NKITGKAMMLDEIINYVQSLQRQVEFLSM 190
>gi|449518045|ref|XP_004166054.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 533
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+MR LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 343 ARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 402
Query: 387 VMWM 390
+ M
Sbjct: 403 FLSM 406
>gi|357148526|ref|XP_003574799.1| PREDICTED: transcription factor bHLH62-like [Brachypodium
distachyon]
Length = 401
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 192 ARRGQATDSHSLAERVRRERISQRMKFLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVE 251
Query: 387 VMWMG-SGMAPLMFPGMQHYMSR-MGMGMGPPPLPSVTNPMHFSRVPLVDQ 435
+ M + + PL F + + + M GP + S P DQ
Sbjct: 252 FLSMKLATVNPLDFSNLPTLLHKDMYQACGPSASSVFSLESSNSAFPFSDQ 302
>gi|108707005|gb|ABF94800.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 809
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 305 ECQSEAAGFESGAGNKTAQRSGSCR--RSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
E E AG ++G + + + R R +A H+L+ER RR++INE+M+ LQ+L+P C
Sbjct: 605 ELSMEHAGEKAGDADASREEYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVPGC 664
Query: 363 NK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
NK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 665 NKITGKAMMLDEIINYVQSLQRQVEFLSM 693
>gi|108707003|gb|ABF94798.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
Length = 810
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 305 ECQSEAAGFESGAGNKTAQRSGSCR--RSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
E E AG ++G + + + R R +A H+L+ER RR++INE+M+ LQ+L+P C
Sbjct: 605 ELSMEHAGEKAGDADASREEYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVPGC 664
Query: 363 NK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
NK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 665 NKITGKAMMLDEIINYVQSLQRQVEFLSM 693
>gi|255558300|ref|XP_002520177.1| DNA binding protein, putative [Ricinus communis]
gi|223540669|gb|EEF42232.1| DNA binding protein, putative [Ricinus communis]
Length = 265
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 140 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 199
Query: 387 VMWMG-SGMAPLMFPGMQHYMSR 408
+ M + M PG++ + S+
Sbjct: 200 FLSMKLEAVNTRMTPGIEAFPSK 222
>gi|212721436|ref|NP_001132323.1| uncharacterized protein LOC100193765 [Zea mays]
gi|194694078|gb|ACF81123.1| unknown [Zea mays]
gi|414869584|tpg|DAA48141.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 404
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 197 RRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEF 256
Query: 388 MWM 390
+ M
Sbjct: 257 LSM 259
>gi|218201482|gb|EEC83909.1| hypothetical protein OsI_29959 [Oryza sativa Indica Group]
Length = 405
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 206 ARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVE 265
Query: 387 VMWMG-SGMAPLMFPGMQHYMSR-MGMGMGP 415
+ M + + PL F + + + M GP
Sbjct: 266 FLSMKLATVNPLDFSNLPTLLQKDMFQACGP 296
>gi|223950211|gb|ACN29189.1| unknown [Zea mays]
gi|414869585|tpg|DAA48142.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 401
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 197 RRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEF 256
Query: 388 MWM 390
+ M
Sbjct: 257 LSM 259
>gi|30690689|ref|NP_849508.1| transcription factor BEE 2 [Arabidopsis thaliana]
gi|332661270|gb|AEE86670.1| transcription factor BEE 2 [Arabidopsis thaliana]
Length = 302
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 143 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 202
Query: 387 VMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPM-HFSRVPLVDQ 435
+ M S + P + + ++ GPP S + M F PL Q
Sbjct: 203 FLSMKLSVINPELECHIDDLSAKQAYFTGPPEGDSKQSIMADFRSFPLHQQ 253
>gi|115477387|ref|NP_001062289.1| Os08g0524800 [Oryza sativa Japonica Group]
gi|29647487|dbj|BAC75416.1| bHLH transcription factor(GBOF-1)-like [Oryza sativa Japonica
Group]
gi|113624258|dbj|BAF24203.1| Os08g0524800 [Oryza sativa Japonica Group]
Length = 405
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 206 ARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVE 265
Query: 387 VMWMG-SGMAPLMFPGMQHYMSR-MGMGMGP 415
+ M + + PL F + + + M GP
Sbjct: 266 FLSMKLATVNPLDFSNLPTLLQKDMFQACGP 296
>gi|357113290|ref|XP_003558437.1| PREDICTED: transcription factor bHLH74-like [Brachypodium
distachyon]
Length = 296
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 305 ECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
E SE AG N+ +R +A H+L+ER RR++INE+M+ LQ+L+P CNK
Sbjct: 99 EVNSEKAG--DAESNREDYVHIRAKRGQATNNHSLAERFRREKINERMKHLQDLVPGCNK 156
Query: 365 -TDKASMLDEAIEYLKSLQLQLQVMWM 390
T KA MLDE I Y++SLQ Q++ + M
Sbjct: 157 ITGKAMMLDEIINYVQSLQRQVEFLSM 183
>gi|356508360|ref|XP_003522925.1| PREDICTED: transcription factor bHLH63-like [Glycine max]
Length = 398
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 196 ARRGQATDSHSLAERVRREKISERMNYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVE 255
Query: 387 VMWM 390
+ M
Sbjct: 256 FLSM 259
>gi|449466372|ref|XP_004150900.1| PREDICTED: transcription factor bHLH62-like [Cucumis sativus]
Length = 412
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 218 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVE 277
Query: 387 VMWM 390
+ M
Sbjct: 278 FLSM 281
>gi|414869720|tpg|DAA48277.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 252
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 141 ARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVE 200
Query: 387 VMWMG-SGMAPLMF 399
+ M + M+P+++
Sbjct: 201 FLSMRIASMSPVLY 214
>gi|223702406|gb|ACN21634.1| putative basic helix-loop-helix protein BHLH10 [Lotus japonicus]
Length = 338
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 53/78 (67%), Gaps = 8/78 (10%)
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-- 387
R A + ++ RRRR++INE+++ LQ L+P+ K D ++ML+EA++Y+K LQLQ+++
Sbjct: 250 RGSATDPQSIYARRRREKINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLS 309
Query: 388 ---MWMGSGMAPLMFPGM 402
+WM AP+ F GM
Sbjct: 310 SDDLWM---YAPIAFNGM 324
>gi|115483366|ref|NP_001065353.1| Os10g0556200 [Oryza sativa Japonica Group]
gi|14165335|gb|AAK55467.1|AC069300_22 putative DNA-binding protein [Oryza sativa Japonica Group]
gi|31433458|gb|AAP54971.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113639885|dbj|BAF27190.1| Os10g0556200 [Oryza sativa Japonica Group]
Length = 191
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 40/45 (88%)
Query: 343 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+RRDRIN+KM+ LQ+L+P+ +KTDKASMLDE I+YLK LQ Q+QV
Sbjct: 12 KRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQV 56
>gi|357516845|ref|XP_003628711.1| BHLH transcription factor [Medicago truncatula]
gi|355522733|gb|AET03187.1| BHLH transcription factor [Medicago truncatula]
Length = 467
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 308 RRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQQQVEF 367
Query: 388 MWM 390
+ M
Sbjct: 368 LSM 370
>gi|289540888|gb|ADD09565.1| unknown [Trifolium repens]
Length = 290
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 24/186 (12%)
Query: 249 DDVRKVISPSERGKT-ETIEPTVTSSSGGSGSSFNRTSKQSTGDN-SLKRKSRDAVDSEC 306
D + K ++P ++ T + ++ V ++ +R ++ N S+ S SE
Sbjct: 112 DKINKCVNPKKKPHTLKDLQRCVANAESKKSKKVDRNGNKAEETNASVDGHSSSGYTSE- 170
Query: 307 QSEAAGFESGAGNKTA--------QRSGSCRRSR--AAEVHNLSERRRRDRINEKMRALQ 356
E +E +G T+ +G R +R A + +L R+RR++INE++R LQ
Sbjct: 171 --EHNMYEENSGGTTSASKSTMSLNSNGKARANRGSATDPQSLYARKRREKINERLRTLQ 228
Query: 357 ELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGMQHYMSRMGM 411
L+P+ K D ++ML++AI Y+K LQLQ+++ MWM AP+ + G+ ++ +
Sbjct: 229 NLVPNGTKVDISTMLEDAIHYVKFLQLQIKLLSSDDMWM---YAPIAYNGLDIGVN-LNQ 284
Query: 412 GMGPPP 417
+ PPP
Sbjct: 285 KISPPP 290
>gi|297835410|ref|XP_002885587.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297331427|gb|EFH61846.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 374
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M LQ+L+P CN+ T KA MLDE I Y++SLQ Q++
Sbjct: 196 ARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVE 255
Query: 387 VMWM 390
+ M
Sbjct: 256 FLSM 259
>gi|323388953|gb|ADX60281.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 405
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 206 ARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVE 265
Query: 387 VMWM 390
+ M
Sbjct: 266 FLSM 269
>gi|295913599|gb|ADG58045.1| transcription factor [Lycoris longituba]
Length = 229
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 285 SKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS-----CRRSRAAEVHNL 339
S ++T +N L K + DS + A + A N T RR +A H+L
Sbjct: 30 SIETTNENVLDTKQKGGQDSSTMANAKPSGTNAKNSTDGAKEDYIHVRARRGQATNSHSL 89
Query: 340 SERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++ + M
Sbjct: 90 AERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 141
>gi|242041659|ref|XP_002468224.1| hypothetical protein SORBIDRAFT_01g042070 [Sorghum bicolor]
gi|241922078|gb|EER95222.1| hypothetical protein SORBIDRAFT_01g042070 [Sorghum bicolor]
Length = 291
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 302 VDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPH 361
V EC E G ++GA + + +R +A H+L+ER RR++INE+M+ LQ+L+P
Sbjct: 101 VSMECADEKPG-DAGAKREDYVHVRA-KRGQATNSHSLAERFRREKINERMKLLQDLVPG 158
Query: 362 CNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAP 396
CNK T KA MLDE I Y++SLQ Q++ + M S ++P
Sbjct: 159 CNKITGKAMMLDEIINYVQSLQRQVEFLSMKLSAISP 195
>gi|22331295|ref|NP_189011.2| transcription factor bHLH77 [Arabidopsis thaliana]
gi|75311240|sp|Q9LK48.1|BH077_ARATH RecName: Full=Transcription factor bHLH77; AltName: Full=Basic
helix-loop-helix protein 77; Short=AtbHLH77; Short=bHLH
77; AltName: Full=Transcription factor EN 87; AltName:
Full=bHLH transcription factor bHLH077
gi|9293943|dbj|BAB01846.1| unnamed protein product [Arabidopsis thaliana]
gi|17529310|gb|AAL38882.1| putative DNA-binding protein [Arabidopsis thaliana]
gi|20465453|gb|AAM20186.1| putative DNA-binding protein [Arabidopsis thaliana]
gi|332643281|gb|AEE76802.1| transcription factor bHLH77 [Arabidopsis thaliana]
Length = 371
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M LQ+L+P CN+ T KA MLDE I Y++SLQ Q++
Sbjct: 193 ARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVE 252
Query: 387 VMWM 390
+ M
Sbjct: 253 FLSM 256
>gi|242084060|ref|XP_002442455.1| hypothetical protein SORBIDRAFT_08g020275 [Sorghum bicolor]
gi|241943148|gb|EES16293.1| hypothetical protein SORBIDRAFT_08g020275 [Sorghum bicolor]
Length = 155
Score = 70.9 bits (172), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 325 SGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQL 383
+G RRS AE HNL+E+RRR +I++K++ L++L+P C +K+++AS+LD+ I+++KSLQ
Sbjct: 16 TGGARRSHPAETHNLTEKRRRRKIDDKLKTLRQLVPGCDDKSNQASILDQTIQHIKSLQQ 75
Query: 384 QLQV 387
Q+QV
Sbjct: 76 QIQV 79
>gi|312283223|dbj|BAJ34477.1| unnamed protein product [Thellungiella halophila]
Length = 342
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I++KM+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 189 ARRGQATDRHSLAERARREKISKKMKYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVE 248
Query: 387 VMWM 390
+ M
Sbjct: 249 FLSM 252
>gi|449469332|ref|XP_004152375.1| PREDICTED: transcription factor bHLH84-like [Cucumis sativus]
gi|449530384|ref|XP_004172175.1| PREDICTED: transcription factor bHLH84-like [Cucumis sativus]
Length = 341
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 305 ECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK 364
E Q G S + + R+ R A + +L R+RR+RINE++R LQ L+P+ K
Sbjct: 229 EAQENNGGITSSSTSNGKPRAS---RGSATDPQSLYARKRRERINERLRILQSLVPNGTK 285
Query: 365 TDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
D ++ML+EA++Y+K LQLQ+++ +WM AP+ + GM
Sbjct: 286 VDISTMLEEAVQYVKFLQLQIKLLSSDDLWM---YAPIAYNGM 325
>gi|302763871|ref|XP_002965357.1| hypothetical protein SELMODRAFT_439190 [Selaginella moellendorffii]
gi|300167590|gb|EFJ34195.1| hypothetical protein SELMODRAFT_439190 [Selaginella moellendorffii]
Length = 730
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 376 RRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEF 435
Query: 388 MWM 390
+ M
Sbjct: 436 LSM 438
>gi|225430730|ref|XP_002266502.1| PREDICTED: transcription factor bHLH64-like [Vitis vinifera]
Length = 362
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 23/134 (17%)
Query: 278 GSSFNRTSKQSTGDNSLK-RKSRDAVDSECQSE------------AAGFESGAGNKTAQR 324
G++ + ++ G NS+K RK+ A+ EC+ + S ++
Sbjct: 120 GAATSVDGRELAGRNSVKKRKAEVALTEECKDQKIKRDEEEEESKIEEKHSEISPNASKV 179
Query: 325 SGS---------CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEA 374
SGS RR +A + H+L+ER RR++I++KM+ LQ+L+P CNK T KA MLDE
Sbjct: 180 SGSPKPDYIHVRARRGQATDSHSLAERARREKISKKMKYLQDLVPGCNKITGKAGMLDEI 239
Query: 375 IEYLKSLQLQLQVM 388
I Y++SLQ Q++ +
Sbjct: 240 INYVQSLQRQVEFL 253
>gi|115479723|ref|NP_001063455.1| Os09g0474100 [Oryza sativa Japonica Group]
gi|50726625|dbj|BAD34345.1| TA1 protein-like [Oryza sativa Japonica Group]
gi|113631688|dbj|BAF25369.1| Os09g0474100 [Oryza sativa Japonica Group]
gi|215768249|dbj|BAH00478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|323388941|gb|ADX60275.1| bHLH- transcription factor [Oryza sativa Japonica Group]
Length = 428
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 250 ARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 309
Query: 387 VMWM 390
+ M
Sbjct: 310 FLSM 313
>gi|115479977|ref|NP_001063582.1| Os09g0501600 [Oryza sativa Japonica Group]
gi|113631815|dbj|BAF25496.1| Os09g0501600 [Oryza sativa Japonica Group]
gi|125606227|gb|EAZ45263.1| hypothetical protein OsJ_29905 [Oryza sativa Japonica Group]
gi|215765178|dbj|BAG86875.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 366
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 177 RRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEF 236
Query: 388 MWMGSGMA--PLMFPGMQHYMSR-MGMGMGPP-----PLPSVTNPMHFSRVPLVDQSMSM 439
+ M L F + + + M GP PL S F QS +
Sbjct: 237 LSMKLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGL 296
Query: 440 AQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQ 499
+N+ + A+ P + QYA F Q + N F++ Q
Sbjct: 297 GAMENQCSLDLANTALP---------HTGSTQYA----FQKQQRDLWEDNTFQYNDEQSQ 343
Query: 500 NQIVSLP 506
VS P
Sbjct: 344 EDAVSAP 350
>gi|297735141|emb|CBI17503.3| unnamed protein product [Vitis vinifera]
Length = 366
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I++KM+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 192 ARRGQATDSHSLAERARREKISKKMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVE 251
Query: 387 VM 388
+
Sbjct: 252 FL 253
>gi|255646074|gb|ACU23524.1| unknown [Glycine max]
Length = 402
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+LIP CNK KA MLDE I Y++SLQ Q++
Sbjct: 195 RRGQATDSHSLAERVRREKISERMKYLQDLIPGCNKVAGKAGMLDEIINYVQSLQRQVEF 254
Query: 388 MWM 390
+ M
Sbjct: 255 LSM 257
>gi|326514032|dbj|BAJ92166.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 316
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 292 NSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEK 351
NS++R +R + + QS+ + G G K +R +A H+L+ER RR +I+E+
Sbjct: 106 NSMERDNR-KISPKTQSKEDSSD-GDGTKENYVHLRAKRGQATNSHSLAERLRRKKISER 163
Query: 352 MRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 164 MKLLQDLVPGCNKITGKAVMLDEIINYVQSLQRQVEFLSM 203
>gi|125564259|gb|EAZ09639.1| hypothetical protein OsI_31923 [Oryza sativa Indica Group]
Length = 366
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 177 RRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEF 236
Query: 388 MWMGSGMA--PLMFPGMQHYMSR-MGMGMGPP-----PLPSVTNPMHFSRVPLVDQSMSM 439
+ M L F + + + M GP PL S F QS +
Sbjct: 237 LSMKLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGL 296
Query: 440 AQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQ 499
+N+ + A+ P + QYA F Q + N F++ Q
Sbjct: 297 GAMENQCSLDLANTALP---------HTGSTQYA----FQKQQRDLWEDNTFQYNDEQSQ 343
Query: 500 NQIVSLP 506
VS P
Sbjct: 344 EDAVSAP 350
>gi|77552099|gb|ABA94896.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
Length = 246
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 52/73 (71%), Gaps = 8/73 (10%)
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-----W 389
+ +L +RRR+RINE++R LQ+L+P+ K D ++ML+EA++Y+K LQLQ++++ W
Sbjct: 164 DTQSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDTW 223
Query: 390 MGSGMAPLMFPGM 402
M APL + GM
Sbjct: 224 M---FAPLAYNGM 233
>gi|359494803|ref|XP_003634844.1| PREDICTED: transcription factor bHLH74-like [Vitis vinifera]
gi|296090643|emb|CBI41042.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
+R +A H+L+ER RR+RI+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 249 KRGQATNSHSLAERVRRERISERMKFLQDLVPGCNKITGKAVMLDEIINYVQSLQRQVEF 308
Query: 388 MWMGSGMAPLMFPGMQHYMSRM 409
+ M ++P M + R+
Sbjct: 309 LSMKLAT---VYPEMNVQIERI 327
>gi|218202318|gb|EEC84745.1| hypothetical protein OsI_31742 [Oryza sativa Indica Group]
Length = 428
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 250 ARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 309
Query: 387 VMWM 390
+ M
Sbjct: 310 FLSM 313
>gi|242045042|ref|XP_002460392.1| hypothetical protein SORBIDRAFT_02g027430 [Sorghum bicolor]
gi|241923769|gb|EER96913.1| hypothetical protein SORBIDRAFT_02g027430 [Sorghum bicolor]
Length = 438
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 258 ARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 317
Query: 387 VMWM 390
+ M
Sbjct: 318 FLSM 321
>gi|224134264|ref|XP_002327796.1| predicted protein [Populus trichocarpa]
gi|222836881|gb|EEE75274.1| predicted protein [Populus trichocarpa]
Length = 290
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 286 KQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRR 345
K+ D+ +K KS + ++ E ++ A KT RR +A + H+L+ER RR
Sbjct: 164 KEVEVDSKVKEKSSIGISADFSKENQ--QTSALPKTDYIHVRARRGQATDSHSLAERARR 221
Query: 346 DRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
++I++KM++LQ+L+P CNK T +A MLDE I Y++SLQ Q++ + M
Sbjct: 222 EKISKKMKSLQDLVPGCNKITGRAGMLDEIINYVQSLQRQVEFLSM 267
>gi|289540905|gb|ADD09579.1| unknown [Trifolium repens]
Length = 276
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 24/186 (12%)
Query: 249 DDVRKVISPSERGKT-ETIEPTVTSSSGGSGSSFNRTSKQSTGDN-SLKRKSRDAVDSEC 306
D + K ++P ++ T + ++ V ++ +R ++ N S+ S SE
Sbjct: 98 DKINKCVNPKKKPHTLKDLQRCVANAESKKSKKVDRNGNKAEETNASVDGHSSSGYTSE- 156
Query: 307 QSEAAGFESGAGNKTA--------QRSGSCRRSR--AAEVHNLSERRRRDRINEKMRALQ 356
E +E +G T+ +G R +R A + +L R+RR++INE++R LQ
Sbjct: 157 --EHNMYEENSGGTTSASKSTMSLNSNGKARANRGSATDPQSLYARKRREKINERLRTLQ 214
Query: 357 ELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGMQHYMSRMGM 411
L+P+ K D ++ML++AI Y+K LQLQ+++ MWM AP+ + G+ ++ +
Sbjct: 215 NLVPNGTKVDISTMLEDAIHYVKFLQLQIKLLSSDDMWM---YAPIAYNGLDIGVN-LNQ 270
Query: 412 GMGPPP 417
+ PPP
Sbjct: 271 KISPPP 276
>gi|357158920|ref|XP_003578282.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 415
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 243 ARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 302
Query: 387 VMWM 390
+ M
Sbjct: 303 FLSM 306
>gi|218186081|gb|EEC68508.1| hypothetical protein OsI_36777 [Oryza sativa Indica Group]
gi|222616287|gb|EEE52419.1| hypothetical protein OsJ_34535 [Oryza sativa Japonica Group]
Length = 258
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 53/75 (70%), Gaps = 8/75 (10%)
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM---- 388
+ + +L +RRR+RINE++R LQ+L+P+ K D ++ML+EA++Y+K LQLQ++++
Sbjct: 174 SKDTQSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDD 233
Query: 389 -WMGSGMAPLMFPGM 402
WM APL + GM
Sbjct: 234 TWM---FAPLAYNGM 245
>gi|18406408|ref|NP_564749.1| transcription factor BPE [Arabidopsis thaliana]
gi|28393152|gb|AAO42009.1| putative bHLH protein [Arabidopsis thaliana]
gi|28827506|gb|AAO50597.1| putative bHLH protein [Arabidopsis thaliana]
gi|113431918|emb|CAK32498.1| basic helix loop helix protein [Arabidopsis thaliana]
gi|332195476|gb|AEE33597.1| transcription factor BPE [Arabidopsis thaliana]
Length = 264
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 30/196 (15%)
Query: 226 SHCGSNQVAYDLDMSRAS-------SSGLNDDVRKVISPS-ERGKTETIEPTVTSSSGGS 277
S G NQ D D++ A+ S L+ V + IS + +R + E+ + S+ G S
Sbjct: 36 SFVGPNQFG-DADLTTAANGDPARMSHALSQAVIEGISGAWKRREDESKSAKIVSTIGAS 94
Query: 278 GSSFNRTSKQSTGDNSLKRKSRDAV-DSECQSEAAGFESGAGNKTAQRSGS-----CRRS 331
G+N KR+ D V D + ++E+ G E+ + + + RR
Sbjct: 95 -----------EGEN--KRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKDYIHVRARRG 141
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM 390
+A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++ + M
Sbjct: 142 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 201
Query: 391 G-SGMAPLMFPGMQHY 405
+ M PG++ +
Sbjct: 202 KLEAVNSRMNPGIEVF 217
>gi|449434704|ref|XP_004135136.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 561
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A H+L+ER RR++I+E+M+ LQEL+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 372 RRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 431
Query: 388 MWM 390
+ M
Sbjct: 432 LSM 434
>gi|356545203|ref|XP_003541034.1| PREDICTED: transcription factor bHLH63-like [Glycine max]
Length = 402
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+LIP CNK KA MLDE I Y++SLQ Q++
Sbjct: 195 RRGQATDSHSLAERVRREKISERMKYLQDLIPGCNKVAGKAGMLDEIINYVQSLQRQVEF 254
Query: 388 MWM 390
+ M
Sbjct: 255 LSM 257
>gi|21592490|gb|AAM64440.1| unknown [Arabidopsis thaliana]
Length = 264
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 10/126 (7%)
Query: 288 STGDNSLKRKSRDAV-DSECQSEAAGFESGAGNKTAQRSGS-----CRRSRAAEVHNLSE 341
S G+N KR+ D V D + ++E+ G E+ + + + RR +A + H+L+E
Sbjct: 94 SEGEN--KRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAE 151
Query: 342 RRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF 399
R RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++ + M + M
Sbjct: 152 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 211
Query: 400 PGMQHY 405
PG++ +
Sbjct: 212 PGIEVF 217
>gi|295913657|gb|ADG58071.1| transcription factor [Lycoris longituba]
Length = 258
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M LQ+L+P CNK KAS+LDE I Y+++LQ Q++
Sbjct: 133 ARRGQATDSHSLAERARREKISERMNILQDLVPGCNKVIGKASVLDEIINYIQALQRQVE 192
Query: 387 VMWMG-SGMAPLMFPGMQHY 405
+ M + M PG++ +
Sbjct: 193 FLSMKLEAVNSQMNPGIEGF 212
>gi|148906813|gb|ABR16552.1| unknown [Picea sitchensis]
Length = 605
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 406 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 465
Query: 387 VMWM 390
+ M
Sbjct: 466 FLSM 469
>gi|77556979|gb|ABA99775.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
Length = 387
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 276 GSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAE 335
+ S +K T D+S +RK + A + +S+ A ++ ++SG +
Sbjct: 163 AAASPTTTMNKDETSDDSGERKKKKASSAAGKSKQASPRGCRSSQPYRKSGDSIDELFTK 222
Query: 336 VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA 395
H RRR +I E+ R LQ L+P C+K+++AS LD+ I+Y+KSLQ QL+ M +
Sbjct: 223 FH-----RRRFKITERFRTLQRLVPGCDKSNQASTLDQTIQYMKSLQHQLKAMSVVGSPP 277
Query: 396 PLMFPGMQH 404
L++P H
Sbjct: 278 ALLYPAAVH 286
>gi|290767992|gb|ADD60699.1| putative TA1 protein [Oryza officinalis]
Length = 435
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 260 ARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 319
Query: 387 VMWM 390
+ M
Sbjct: 320 FLSM 323
>gi|147845457|emb|CAN83346.1| hypothetical protein VITISV_042277 [Vitis vinifera]
Length = 489
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 36/39 (92%)
Query: 348 INEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
INEKM+ALQ LIP+ NKTDKASMLDEAIEYLK LQLQ+Q
Sbjct: 196 INEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 234
>gi|449493518|ref|XP_004159328.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 517
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQEL+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 327 ARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVE 386
Query: 387 VMWM 390
+ M
Sbjct: 387 FLSM 390
>gi|323388959|gb|ADX60284.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 437
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 262 ARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 321
Query: 387 VMWM 390
+ M
Sbjct: 322 FLSM 325
>gi|359473485|ref|XP_003631305.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like
[Vitis vinifera]
Length = 609
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 409 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 468
Query: 387 VMWM 390
+ M
Sbjct: 469 FLSM 472
>gi|449447291|ref|XP_004141402.1| PREDICTED: transcription factor bHLH84-like [Cucumis sativus]
Length = 327
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 9/159 (5%)
Query: 250 DVRKVISPSERGKT-ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQS 308
D ++I P+++ +T ++ + SG+S +S + + R + D S
Sbjct: 160 DQNQLIKPNKKIRTSNNVQIKSRKGTESSGNSKKVSSTRRRKCEEEQENGRSSCDMNSCS 219
Query: 309 EAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKA 368
E N + + R A + +L R+RR+RINE++R LQ+L+P+ K D +
Sbjct: 220 SDNSSEDDNNNASPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDIS 279
Query: 369 SMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
+ML+EA+ Y+K LQLQ+++ +WM AP+ + GM
Sbjct: 280 TMLEEAVHYVKFLQLQIKLLSSDDLWM---YAPIAYNGM 315
>gi|242033101|ref|XP_002463945.1| hypothetical protein SORBIDRAFT_01g009380 [Sorghum bicolor]
gi|241917799|gb|EER90943.1| hypothetical protein SORBIDRAFT_01g009380 [Sorghum bicolor]
Length = 315
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEA 374
G G K +R +A H+L+ER RR +I+E+M+ LQ+L+P CNK T KA MLDE
Sbjct: 128 GDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCNKITGKAVMLDEI 187
Query: 375 IEYLKSLQLQLQVMWM 390
I Y++SLQ Q++ + M
Sbjct: 188 INYVQSLQRQVEFLSM 203
>gi|224122148|ref|XP_002318764.1| predicted protein [Populus trichocarpa]
gi|222859437|gb|EEE96984.1| predicted protein [Populus trichocarpa]
Length = 359
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 66/100 (66%), Gaps = 6/100 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 174 ARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVE 233
Query: 387 VMWMG-SGMAPLMFP-GMQ--HYMSR-MGMGMGPPPLPSV 421
+ M + + P+ + GM+ +M R + PPLPS+
Sbjct: 234 FLSMKLASVNPMFYDFGMELDAFMVRPERLSSMSPPLPSL 273
>gi|115467562|ref|NP_001057380.1| Os06g0275600 [Oryza sativa Japonica Group]
gi|55295989|dbj|BAD68029.1| putative TA1 protein [Oryza sativa Japonica Group]
gi|113595420|dbj|BAF19294.1| Os06g0275600 [Oryza sativa Japonica Group]
Length = 437
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 262 ARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 321
Query: 387 VMWM 390
+ M
Sbjct: 322 FLSM 325
>gi|356553998|ref|XP_003545337.1| PREDICTED: uncharacterized protein LOC100797500 [Glycine max]
Length = 350
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 10/85 (11%)
Query: 325 SGSCRRSR--AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
+G R SR A + +L R+RR+RINE++R LQ L+P+ K D ++ML+EA+ Y+K LQ
Sbjct: 258 NGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQ 317
Query: 383 LQLQV-----MWMGSGMAPLMFPGM 402
LQ+++ +WM APL + G+
Sbjct: 318 LQIKLLSSDDLWM---YAPLAYNGL 339
>gi|290767978|gb|ADD60686.1| putative TA1 protein [Oryza australiensis]
Length = 436
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 17/227 (7%)
Query: 174 NLGDLGKLVNFS-QSTAPPKGE----LGPCSG--QFDRKRSGNLTQ-GEVRECSMMTVGS 225
N G+ G +VN S T P G+ + PC + + S N+TQ GE ++ G
Sbjct: 105 NGGNFGAMVNHSFPGTHLPSGDFQNGVEPCREIEAIENEGSKNVTQTGEKQQGD----GE 160
Query: 226 SHCGSNQVAYDLDM-SRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRT 284
+ C + + +L M R +G ++ R +S S++ K + V + G + +
Sbjct: 161 TTCDVDSSSKELSMPGRNGGAGHDEGTR--VSCSKKRKRSGQDDGVKHAEGDEQLATVGS 218
Query: 285 SKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRR 344
++++ D K K R +V S S ++ K RR +A H+L+ER R
Sbjct: 219 AQKNENDEKGKPK-RSSVASGKSSGKQTKDNAGSPKEEYIHVRARRGQATNSHSLAERVR 277
Query: 345 RDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
R++I+E+M+ LQ L+P C K T KA MLDE I Y++SLQ Q++ + M
Sbjct: 278 REKISERMKYLQNLVPGCTKVTGKAVMLDEIINYVQSLQRQVEFLSM 324
>gi|255540845|ref|XP_002511487.1| DNA binding protein, putative [Ricinus communis]
gi|223550602|gb|EEF52089.1| DNA binding protein, putative [Ricinus communis]
Length = 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 11/85 (12%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 148 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 207
Query: 387 VMWMGSGMAPLMFPGMQHYMSRMGM 411
+ M ++ SRMGM
Sbjct: 208 FLSM----------KLEAVNSRMGM 222
>gi|357509815|ref|XP_003625196.1| Transcription factor bHLH60 [Medicago truncatula]
gi|124360133|gb|ABN08149.1| Helix-loop-helix DNA-binding [Medicago truncatula]
gi|355500211|gb|AES81414.1| Transcription factor bHLH60 [Medicago truncatula]
Length = 340
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 315 SGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDE 373
SGAG K RR +A + H+L+ER RR++IN +M+ LQEL+P C K A +LDE
Sbjct: 162 SGAGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCEKISGTALVLDE 221
Query: 374 AIEYLKSLQLQLQVMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPS-VTNPMHFSRVP 431
I ++++LQ Q++++ M + + P + + ++ G + LPS + P+ + +P
Sbjct: 222 IINHVQTLQRQVEILSMKLAAVNPRIDFNLDRLLAADGSSLMDSNLPSTMVTPLVWPEMP 281
Query: 432 L 432
L
Sbjct: 282 L 282
>gi|414885894|tpg|DAA61908.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 434
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 255 ARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 314
Query: 387 VMWM 390
+ M
Sbjct: 315 FLSM 318
>gi|224108619|ref|XP_002314910.1| predicted protein [Populus trichocarpa]
gi|222863950|gb|EEF01081.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 371 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 430
Query: 387 VMWM 390
+ M
Sbjct: 431 FLSM 434
>gi|226508342|ref|NP_001152551.1| DNA binding protein [Zea mays]
gi|195657419|gb|ACG48177.1| DNA binding protein [Zea mays]
Length = 454
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 259 ARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 318
Query: 387 VMWM 390
+ M
Sbjct: 319 FLSM 322
>gi|125544879|gb|EAY91018.1| hypothetical protein OsI_12623 [Oryza sativa Indica Group]
Length = 310
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 14/139 (10%)
Query: 273 SSGGSGSSFNRTSKQSTG-DNSLKRKSRDAVDSECQSEAAGF---ESGAGNKTAQRSGSC 328
S+ +GS + + Q G D S+ +R ++ S C SE ES K+ ++ S
Sbjct: 166 SAKKAGSKRGKKAAQCEGEDGSIAVTNRQSL-SCCTSENDSIGSQESPVAAKSNGKAQSG 224
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV- 387
RS A + +L R+RR+RINE+++ LQ L+P+ K D ++ML+EA+ Y+K LQLQ+++
Sbjct: 225 HRS-ATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKFLQLQIKLL 283
Query: 388 ----MWMGSGMAPLMFPGM 402
MWM AP+ + GM
Sbjct: 284 SSDEMWM---YAPIAYNGM 299
>gi|255547017|ref|XP_002514566.1| conserved hypothetical protein [Ricinus communis]
gi|223546170|gb|EEF47672.1| conserved hypothetical protein [Ricinus communis]
Length = 566
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 373 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 432
Query: 387 VMWM 390
+ M
Sbjct: 433 FLSM 436
>gi|326489817|dbj|BAJ93982.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 243 ARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 302
Query: 387 VMWM 390
+ M
Sbjct: 303 FLSM 306
>gi|255538082|ref|XP_002510106.1| transcription factor, putative [Ricinus communis]
gi|223550807|gb|EEF52293.1| transcription factor, putative [Ricinus communis]
Length = 327
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 8/78 (10%)
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-- 387
R A + +L R+RR+RINE++R LQ L+P+ K D ++ML+EA++Y+K LQLQ+++
Sbjct: 241 RGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLS 300
Query: 388 ---MWMGSGMAPLMFPGM 402
+WM AP+ + GM
Sbjct: 301 SDDLWM---YAPIAYNGM 315
>gi|115454133|ref|NP_001050667.1| Os03g0617800 [Oryza sativa Japonica Group]
gi|50428697|gb|AAT77048.1| putative transcription factor [Oryza sativa Japonica Group]
gi|108709850|gb|ABF97645.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
gi|113549138|dbj|BAF12581.1| Os03g0617800 [Oryza sativa Japonica Group]
gi|125587132|gb|EAZ27796.1| hypothetical protein OsJ_11741 [Oryza sativa Japonica Group]
Length = 310
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 14/139 (10%)
Query: 273 SSGGSGSSFNRTSKQSTG-DNSLKRKSRDAVDSECQSEAAGF---ESGAGNKTAQRSGSC 328
S+ +GS + + Q G D S+ +R ++ S C SE ES K+ ++ S
Sbjct: 166 SAKKAGSKRGKKAAQCEGEDGSIAVTNRQSL-SCCTSENDSIGSQESPVAAKSNGKAQSG 224
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV- 387
RS A + +L R+RR+RINE+++ LQ L+P+ K D ++ML+EA+ Y+K LQLQ+++
Sbjct: 225 HRS-ATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKFLQLQIKLL 283
Query: 388 ----MWMGSGMAPLMFPGM 402
MWM AP+ + GM
Sbjct: 284 SSDEMWM---YAPIAYNGM 299
>gi|414589749|tpg|DAA40320.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 453
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 258 ARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 317
Query: 387 VMWM 390
+ M
Sbjct: 318 FLSM 321
>gi|116787273|gb|ABK24441.1| unknown [Picea sitchensis]
Length = 320
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y+++LQ Q++
Sbjct: 125 RRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKAVMLDEIINYVQALQCQVEF 184
Query: 388 MWM 390
+ M
Sbjct: 185 LSM 187
>gi|356526880|ref|XP_003532044.1| PREDICTED: transcription factor BPE-like [Glycine max]
Length = 273
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 148 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 207
Query: 387 VMWM 390
+ M
Sbjct: 208 FLSM 211
>gi|357516593|ref|XP_003628585.1| Transcription factor bHLH79 [Medicago truncatula]
gi|355522607|gb|AET03061.1| Transcription factor bHLH79 [Medicago truncatula]
Length = 278
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
Query: 387 VMWM 390
+ M
Sbjct: 213 FLSM 216
>gi|334184231|ref|NP_001189527.1| transcription factor bHLH84 [Arabidopsis thaliana]
gi|330251239|gb|AEC06333.1| transcription factor bHLH84 [Arabidopsis thaliana]
Length = 341
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 23/109 (21%)
Query: 314 ESGAGNKTAQRSGSCRRSRAA---------------EVHNLSERRRRDRINEKMRALQEL 358
E G +K +G R SR A +VH + ++RR+RINE++R LQ L
Sbjct: 223 EDGEDSKALNLNGKTRASRGAATDPQSLYARLKQLNKVHCMMVQKRRERINERLRILQHL 282
Query: 359 IPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
+P+ K D ++ML+EA++Y+K LQLQ+++ +WM AP+ + GM
Sbjct: 283 VPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWM---YAPIAYNGM 328
>gi|449515097|ref|XP_004164586.1| PREDICTED: transcription factor bHLH84-like [Cucumis sativus]
Length = 327
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 9/159 (5%)
Query: 250 DVRKVISPSERGKT-ETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQS 308
D ++I P+++ +T ++ + SG+S +S + + R + D S
Sbjct: 160 DQNQLIKPNKKIRTSNNVQIKSRKGTESSGNSKKVSSTRRRKCEEEQENGRSSCDMNSCS 219
Query: 309 EAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKA 368
E N + + R A + +L R+RR+RINE++R LQ+L+P+ K D +
Sbjct: 220 SDNSSEDDNNNASPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDIS 279
Query: 369 SMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
+ML+EA+ Y+K LQLQ+++ +WM AP+ + GM
Sbjct: 280 TMLEEAVHYVKFLQLQIKLLSSDDLWM---YAPIAYNGM 315
>gi|255648089|gb|ACU24499.1| unknown [Glycine max]
Length = 229
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+++P CNK KA +LDE I Y++SLQ Q++
Sbjct: 102 ARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQHQVE 161
Query: 387 VMWM 390
++M
Sbjct: 162 FLFM 165
>gi|115441817|ref|NP_001045188.1| Os01g0915600 [Oryza sativa Japonica Group]
gi|56784941|dbj|BAD82399.1| putative bHLH transcription factor [Oryza sativa Japonica Group]
gi|113534719|dbj|BAF07102.1| Os01g0915600 [Oryza sativa Japonica Group]
gi|215704868|dbj|BAG94896.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189599|gb|EEC72026.1| hypothetical protein OsI_04910 [Oryza sativa Indica Group]
gi|323388943|gb|ADX60276.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 481
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 14/91 (15%)
Query: 314 ESGAGNKTAQRSGS-------------CRRSRAAEVHNLSERRRRDRINEKMRALQELIP 360
E+G G K + S S RR A + H+L+ER RR++I+++M+ LQ+L+P
Sbjct: 252 ENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVP 311
Query: 361 HCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
CNK KA MLDE I Y++SLQ Q++ + M
Sbjct: 312 GCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 342
>gi|449462268|ref|XP_004148863.1| PREDICTED: transcription factor bHLH62-like [Cucumis sativus]
Length = 187
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 19/126 (15%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 8 ARRGKATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE 67
Query: 387 VMWMGSG--------------MAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVPL 432
+ M +A MFP + S +G S+T P + PL
Sbjct: 68 FLSMKVAALNHRVDFINVDDLLAKQMFPTITDNRSSYDTQLGIMGSSSLTIP----QTPL 123
Query: 433 VDQSMS 438
++ ++S
Sbjct: 124 INSNLS 129
>gi|339716200|gb|AEJ88339.1| putative MYC protein [Tamarix hispida]
Length = 301
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 171 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 230
Query: 387 VMWM 390
+ M
Sbjct: 231 FLSM 234
>gi|55419646|gb|AAV51936.1| bHLH transcription factor [Gossypium hirsutum]
Length = 222
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 95 ARRGQATDSHSLAERARRERISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQQQVE 154
Query: 387 VMWM 390
+ M
Sbjct: 155 FLSM 158
>gi|21539493|gb|AAM53299.1| unknown protein [Arabidopsis thaliana]
Length = 335
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 174 ARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233
Query: 387 VMWM 390
+ M
Sbjct: 234 FLSM 237
>gi|388504966|gb|AFK40549.1| unknown [Medicago truncatula]
Length = 278
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 153 ARRGQATDSHGLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
Query: 387 VMWM 390
+ M
Sbjct: 213 FLSM 216
>gi|326501104|dbj|BAJ98783.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 384
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 187 ARRGQATDSHSLAERVRRERISQRMKFLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVE 246
Query: 387 VMWM 390
+ M
Sbjct: 247 FLSM 250
>gi|168059612|ref|XP_001781795.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666702|gb|EDQ53349.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 656
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 443 ARRGQATDSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 502
Query: 387 VMWM 390
+ M
Sbjct: 503 NLSM 506
>gi|102139897|gb|ABF70046.1| basic helix-loop-helix (bHLH) family protein [Musa acuminata]
Length = 278
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR+RI+E+M+ LQEL+P C+K KAS LDE I Y++SLQ Q++
Sbjct: 135 RRGQATDSHSLAERVRRERISERMKYLQELVPGCSKIMGKASTLDEIINYVQSLQRQVEF 194
Query: 388 MWMGSGMA-PLMFPGMQHYMSR 408
+ M A P M ++ R
Sbjct: 195 LSMKLAAAEPRMHLSSSNFFDR 216
>gi|20127066|gb|AAM10952.1|AF488596_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 335
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 174 ARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233
Query: 387 VMWM 390
+ M
Sbjct: 234 FLSM 237
>gi|22329164|ref|NP_195179.2| transcription factor bHLH63 [Arabidopsis thaliana]
gi|75299602|sp|Q8GY61.1|BH063_ARATH RecName: Full=Transcription factor bHLH63; AltName: Full=Basic
helix-loop-helix protein 63; Short=AtbHLH63; Short=bHLH
63; AltName: Full=Transcription factor EN 84; AltName:
Full=bHLH transcription factor bHLH063
gi|26450757|dbj|BAC42487.1| putative bHLH transcription factor bHLH063 [Arabidopsis thaliana]
gi|28950907|gb|AAO63377.1| At4g34530 [Arabidopsis thaliana]
gi|332660989|gb|AEE86389.1| transcription factor bHLH63 [Arabidopsis thaliana]
Length = 335
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 174 ARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233
Query: 387 VMWM 390
+ M
Sbjct: 234 FLSM 237
>gi|3096922|emb|CAA18832.1| putative protein [Arabidopsis thaliana]
gi|7270403|emb|CAB80170.1| putative protein [Arabidopsis thaliana]
Length = 324
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 174 ARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233
Query: 387 VMWM 390
+ M
Sbjct: 234 FLSM 237
>gi|293332515|ref|NP_001169165.1| uncharacterized protein LOC100383015 [Zea mays]
gi|223975273|gb|ACN31824.1| unknown [Zea mays]
Length = 443
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 248 ARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 307
Query: 387 VMWM 390
+ M
Sbjct: 308 FLSM 311
>gi|255540091|ref|XP_002511110.1| DNA binding protein, putative [Ricinus communis]
gi|223550225|gb|EEF51712.1| DNA binding protein, putative [Ricinus communis]
Length = 422
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
R KQ +N +K + + + Q + E G + RR +A + H+L+ER
Sbjct: 133 RGKKQKKCNNEVKEDKKPKAEKKDQKKVPDQEPPTGYIHVR----ARRGQATDSHSLAER 188
Query: 343 RRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF 399
RR++I+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++ + M + + PL +
Sbjct: 189 VRREKISERMKILQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPLFY 247
>gi|297738215|emb|CBI27416.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 304 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 363
Query: 387 VMWM 390
+ M
Sbjct: 364 FLSM 367
>gi|326495502|dbj|BAJ85847.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 474
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 266 ARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVE 325
Query: 387 VMWM 390
+ M
Sbjct: 326 FLSM 329
>gi|326525931|dbj|BAJ93142.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 474
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 266 ARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVE 325
Query: 387 VMWM 390
+ M
Sbjct: 326 FLSM 329
>gi|357115803|ref|XP_003559675.1| PREDICTED: uncharacterized protein LOC100838948 [Brachypodium
distachyon]
Length = 307
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 9/86 (10%)
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381
A SG R+S + +L R+RR+RINE+++ LQ L+P+ K D ++ML+EA++Y+K L
Sbjct: 215 ANPSGKGRQS-TTDPQSLYARKRRERINERLKVLQNLVPNGTKVDISTMLEEAVQYVKFL 273
Query: 382 QLQLQV-----MWMGSGMAPLMFPGM 402
QLQ+++ MWM AP+ + GM
Sbjct: 274 QLQIKLLSSDDMWM---YAPIAYNGM 296
>gi|308080388|ref|NP_001183599.1| uncharacterized protein LOC100502193 [Zea mays]
gi|238013326|gb|ACR37698.1| unknown [Zea mays]
gi|413951548|gb|AFW84197.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 480
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 16/121 (13%)
Query: 283 RTSKQSTG--DNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS----------CRR 330
R++ +S+G DN+ K + A S SE G G ++A + + RR
Sbjct: 228 RSADESSGAEDNNPTTKGKAAQSS---SENGGGRKQQGKESATKPPAEAPKDYIHVRARR 284
Query: 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMW 389
A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++ +
Sbjct: 285 GEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLS 344
Query: 390 M 390
M
Sbjct: 345 M 345
>gi|356495611|ref|XP_003516668.1| PREDICTED: transcription factor bHLH49-like [Glycine max]
Length = 414
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 223 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 282
Query: 387 VMWM 390
+ M
Sbjct: 283 FLSM 286
>gi|297802514|ref|XP_002869141.1| hypothetical protein ARALYDRAFT_491205 [Arabidopsis lyrata subsp.
lyrata]
gi|297314977|gb|EFH45400.1| hypothetical protein ARALYDRAFT_491205 [Arabidopsis lyrata subsp.
lyrata]
Length = 333
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 171 ARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 230
Query: 387 VMWM 390
+ M
Sbjct: 231 FLSM 234
>gi|290768004|gb|ADD60710.1| putative TA1 protein [Oryza brachyantha]
Length = 426
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 251 ARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 310
Query: 387 VMWM 390
+ M
Sbjct: 311 FLSM 314
>gi|33339703|gb|AAQ14331.1|AF283506_1 MYC1 [Catharanthus roseus]
Length = 271
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 60/92 (65%), Gaps = 5/92 (5%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 146 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 205
Query: 387 VMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPP 417
+ M + + PG++ + S+ G PP
Sbjct: 206 FLSMKLEAVNSRLSPGIEGFPSKE---FGQPP 234
>gi|356502674|ref|XP_003520142.1| PREDICTED: transcription factor bHLH49-like [Glycine max]
Length = 551
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 360 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 419
Query: 387 VMWM 390
+ M
Sbjct: 420 FLSM 423
>gi|255645941|gb|ACU23459.1| unknown [Glycine max]
Length = 193
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 131 ARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVE 190
Query: 387 VM 388
+
Sbjct: 191 FL 192
>gi|356534283|ref|XP_003535686.1| PREDICTED: transcription factor bHLH85-like [Glycine max]
Length = 358
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 63/104 (60%), Gaps = 18/104 (17%)
Query: 329 RRSRAA-----EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R+SRA + +L R+RR+RINE++R LQ L+P+ K D ++ML+EA++Y+K LQL
Sbjct: 262 RKSRATTGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQL 321
Query: 384 QLQV-----MWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVT 422
Q+++ +WM AP+ + G+ +G+ + P ++
Sbjct: 322 QIKLLSSDDLWM---YAPIAYNGIN-----IGLDLSISPTKGIS 357
>gi|115456009|ref|NP_001051605.1| Os03g0802900 [Oryza sativa Japonica Group]
gi|29150361|gb|AAO72370.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711612|gb|ABF99407.1| bHLH transcription factor, putative, expressed [Oryza sativa
Japonica Group]
gi|113550076|dbj|BAF13519.1| Os03g0802900 [Oryza sativa Japonica Group]
Length = 265
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y+++LQ Q++
Sbjct: 138 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVE 197
Query: 387 VMWM 390
+ M
Sbjct: 198 FLSM 201
>gi|8778763|gb|AAF79771.1|AC009317_30 T30E16.21 [Arabidopsis thaliana]
Length = 348
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 30/196 (15%)
Query: 226 SHCGSNQVAYDLDMSRAS-------SSGLNDDVRKVISPS-ERGKTETIEPTVTSSSGGS 277
S G NQ D D++ A+ S L+ V + IS + +R + E+ + S+ G S
Sbjct: 30 SFVGPNQFG-DADLTTAANGDPARMSHALSQAVIEGISGAWKRREDESKSAKIVSTIGAS 88
Query: 278 GSSFNRTSKQSTGDNSLKRKSRDAV-DSECQSEAAGFESGAGNKTAQRSGS-----CRRS 331
G+N KR+ D V D + ++E+ G E+ + + + RR
Sbjct: 89 -----------EGEN--KRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKDYIHVRARRG 135
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM 390
+A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++ + M
Sbjct: 136 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 195
Query: 391 G-SGMAPLMFPGMQHY 405
+ M PG++ +
Sbjct: 196 KLEAVNSRMNPGIEVF 211
>gi|323388909|gb|ADX60259.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 265
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y+++LQ Q++
Sbjct: 138 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVE 197
Query: 387 VMWM 390
+ M
Sbjct: 198 FLSM 201
>gi|224100187|ref|XP_002311780.1| predicted protein [Populus trichocarpa]
gi|222851600|gb|EEE89147.1| predicted protein [Populus trichocarpa]
Length = 268
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 11/98 (11%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+++P CNK T KA +LDE I Y++SLQ Q++
Sbjct: 143 ARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVTGKALVLDEIINYIQSLQRQVE 202
Query: 387 VMWMGSGMAPL-------MFPGM---QHYMSRMGMGMG 414
+ M L +FP QH GM G
Sbjct: 203 FLSMKLEAVNLNMNPETEVFPSKDFGQHTFDTAGMAFG 240
>gi|357126478|ref|XP_003564914.1| PREDICTED: transcription factor bHLH62-like [Brachypodium
distachyon]
Length = 475
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 15/92 (16%)
Query: 314 ESGAGNKTAQRSGS--------------CRRSRAAEVHNLSERRRRDRINEKMRALQELI 359
E+G G K + +G+ RR A + H+L+ER RR++I+++M+ LQ+L+
Sbjct: 244 ENGGGKKQGKDAGASKLPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLV 303
Query: 360 PHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
P CNK KA MLDE I Y++SLQ Q++ + M
Sbjct: 304 PGCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 335
>gi|225456604|ref|XP_002267633.1| PREDICTED: transcription factor bHLH79 isoform 1 [Vitis vinifera]
Length = 284
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 159 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 218
Query: 387 VMWM 390
+ M
Sbjct: 219 FLSM 222
>gi|5923912|gb|AAD56411.1|AF185269_1 bHLH transcription factor GBOF-1 [Tulipa gesneriana]
Length = 321
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 137 ARRGQATDSHSLAERVRREKISERMKLLQALVPGCDKVTGKAVMLDEIINYVQSLQNQVE 196
Query: 387 VMWMG-SGMAPLMF 399
+ M + ++P+++
Sbjct: 197 FLSMKLATVSPMLY 210
>gi|168046350|ref|XP_001775637.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673055|gb|EDQ59584.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 162
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 78 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQIE 137
Query: 387 VMWMGSGMAPLMFPGMQH 404
+ M +A + P + H
Sbjct: 138 FLSM--KLAAVNPPRLDH 153
>gi|168063707|ref|XP_001783811.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664693|gb|EDQ51403.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 164
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 75 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQIE 134
Query: 387 VMWM 390
+ M
Sbjct: 135 FLSM 138
>gi|125588289|gb|EAZ28953.1| hypothetical protein OsJ_12999 [Oryza sativa Japonica Group]
Length = 224
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y+++LQ Q++
Sbjct: 97 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVE 156
Query: 387 VMWM 390
+ M
Sbjct: 157 FLSM 160
>gi|356562241|ref|XP_003549380.1| PREDICTED: uncharacterized protein LOC100780907 [Glycine max]
Length = 353
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 15/101 (14%)
Query: 325 SGSCRRSR--AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
+G R SR A + +L R+RR+RINE++R LQ L+P+ K D ++ML+EA+ Y+K LQ
Sbjct: 261 NGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQ 320
Query: 383 LQLQV-----MWMGSGMAPLMFPGMQHYMSRMGMGMGPPPL 418
LQ+++ +WM AP G+ +G+ + PL
Sbjct: 321 LQIKLLSSDDLWM---YAPFAHNGLD-----IGLNLNSLPL 353
>gi|225456461|ref|XP_002284464.1| PREDICTED: transcription factor bHLH137 [Vitis vinifera]
gi|297734492|emb|CBI15739.3| unnamed protein product [Vitis vinifera]
Length = 349
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 173 ARRGQATDSHSLAERVRREKISERMKLLQALVPGCDKVTGKALMLDEIINYVQSLQNQVE 232
Query: 387 VMWMGSGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPM 425
+ M MF M + + P L ++T+P+
Sbjct: 233 FLSMKLASVNPMF--YDFGMDLDALMVRPERLSALTSPL 269
>gi|226492880|ref|NP_001152266.1| BHLH transcription factor [Zea mays]
gi|195654447|gb|ACG46691.1| BHLH transcription factor [Zea mays]
Length = 428
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 261 RRGQATDSHSLAERVRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQCQVEF 320
Query: 388 MWM 390
+ M
Sbjct: 321 LSM 323
>gi|297837577|ref|XP_002886670.1| hypothetical protein ARALYDRAFT_893615 [Arabidopsis lyrata subsp.
lyrata]
gi|297332511|gb|EFH62929.1| hypothetical protein ARALYDRAFT_893615 [Arabidopsis lyrata subsp.
lyrata]
Length = 264
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 10/126 (7%)
Query: 288 STGDNSLKRKSRDAV-DSECQSEAAGFESGAGNKTAQRSGS-----CRRSRAAEVHNLSE 341
S G+N KR+ D V D + ++E+ G E+ + + RR +A + H+L+E
Sbjct: 94 SEGEN--KRQKIDEVCDGKAEAESLGTETEQKKLQIEPTKDYIHVRARRGQATDSHSLAE 151
Query: 342 RRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF 399
R RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++ + M + M
Sbjct: 152 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 211
Query: 400 PGMQHY 405
PG++ +
Sbjct: 212 PGIEVF 217
>gi|414591363|tpg|DAA41934.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 448
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 281 RRGQATDSHSLAERVRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQCQVEF 340
Query: 388 MWM 390
+ M
Sbjct: 341 LSM 343
>gi|356507384|ref|XP_003522447.1| PREDICTED: transcription factor bHLH137-like [Glycine max]
Length = 334
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 150 RRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEF 209
Query: 388 MWMGSGMAPLMF 399
+ M MF
Sbjct: 210 LSMKLASVNPMF 221
>gi|297797231|ref|XP_002866500.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297312335|gb|EFH42759.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 282
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+EKM ALQ++IP CNK KA +LDE I Y++SLQ Q++
Sbjct: 156 ARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVE 215
Query: 387 VMWM 390
+ M
Sbjct: 216 FLSM 219
>gi|242047764|ref|XP_002461628.1| hypothetical protein SORBIDRAFT_02g005713 [Sorghum bicolor]
gi|241925005|gb|EER98149.1| hypothetical protein SORBIDRAFT_02g005713 [Sorghum bicolor]
Length = 178
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+++P CNK KAS+LDE I Y++SLQ Q++
Sbjct: 52 ARRGQATDSHSLAERARREKISERMKVLQDIVPGCNKVIGKASVLDEIINYIQSLQRQVE 111
Query: 387 VMWM 390
+ M
Sbjct: 112 FLSM 115
>gi|225424835|ref|XP_002272776.1| PREDICTED: transcription factor BPE-like [Vitis vinifera]
Length = 277
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
Query: 387 VMWM 390
+ M
Sbjct: 213 FLSM 216
>gi|125546085|gb|EAY92224.1| hypothetical protein OsI_13945 [Oryza sativa Indica Group]
Length = 263
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y+++LQ Q++
Sbjct: 136 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVE 195
Query: 387 VMWM 390
+ M
Sbjct: 196 FLSM 199
>gi|297734057|emb|CBI15304.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 144 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 203
Query: 387 VMWM 390
+ M
Sbjct: 204 FLSM 207
>gi|34391435|gb|AAN18284.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 288
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 127 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 186
Query: 387 VMWM 390
+ M
Sbjct: 187 FLSM 190
>gi|15241896|ref|NP_201067.1| transcription factor bHLH79 [Arabidopsis thaliana]
gi|75311612|sp|Q9LV17.1|BH079_ARATH RecName: Full=Transcription factor bHLH79; AltName: Full=Basic
helix-loop-helix protein 79; Short=AtbHLH79; Short=bHLH
79; AltName: Full=Transcription factor EN 81; AltName:
Full=bHLH transcription factor bHLH079
gi|8809657|dbj|BAA97208.1| unnamed protein product [Arabidopsis thaliana]
gi|18175779|gb|AAL59926.1| unknown protein [Arabidopsis thaliana]
gi|21536811|gb|AAM61143.1| unknown [Arabidopsis thaliana]
gi|21689825|gb|AAM67556.1| unknown protein [Arabidopsis thaliana]
gi|332010247|gb|AED97630.1| transcription factor bHLH79 [Arabidopsis thaliana]
Length = 281
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+EKM ALQ++IP CNK KA +LDE I Y++SLQ Q++
Sbjct: 155 ARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVE 214
Query: 387 VMWM 390
+ M
Sbjct: 215 FLSM 218
>gi|224107851|ref|XP_002314625.1| predicted protein [Populus trichocarpa]
gi|222863665|gb|EEF00796.1| predicted protein [Populus trichocarpa]
Length = 200
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 76 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 135
Query: 387 VMWMG-SGMAPLMFPGMQHYMSR 408
+ M + M PG++ + S+
Sbjct: 136 FLSMKLEAVNTRMNPGIEVFASK 158
>gi|218197962|gb|EEC80389.1| hypothetical protein OsI_22515 [Oryza sativa Indica Group]
Length = 494
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 319 ARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 378
Query: 387 VMWM 390
+ M
Sbjct: 379 FLSM 382
>gi|46367684|emb|CAE00874.1| TA1 protein [Oryza sativa Japonica Group]
Length = 204
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 17/135 (12%)
Query: 314 ESGAGNKTAQRSGS-------------CRRSRAAEVHNLSERRRRDRINEKMRALQELIP 360
E+G G K + S S RR A + H+L+ER RR++I+++M+ LQ+L+P
Sbjct: 49 ENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVP 108
Query: 361 HCNK-TDKASMLDEAIEYLKSLQLQLQVMWMGSGMA--PLMFPGMQHYMSRMGMGMGPPP 417
CNK KA MLDE I Y++SLQ Q++ + M L F + + +++ M P
Sbjct: 109 GCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAK-DMHQSCSP 167
Query: 418 LPSVTNPMHFSRVPL 432
L S P+ S PL
Sbjct: 168 LQSSHFPLETSGAPL 182
>gi|6520231|dbj|BAA87957.1| helix-loop-helix protein homolog [Arabidopsis thaliana]
Length = 318
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 10/126 (7%)
Query: 288 STGDNSLKRKSRDAV-DSECQSEAAGFESGAGNKTAQRSGS-----CRRSRAAEVHNLSE 341
S G+N KR+ D V D + ++E+ G E+ + + + RR +A + H+L+E
Sbjct: 94 SEGEN--KRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAE 151
Query: 342 RRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMF 399
R RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++ + M + M
Sbjct: 152 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 211
Query: 400 PGMQHY 405
PG++ +
Sbjct: 212 PGIEVF 217
>gi|226530189|ref|NP_001145523.1| uncharacterized protein LOC100278938 [Zea mays]
gi|195657423|gb|ACG48179.1| hypothetical protein [Zea mays]
Length = 460
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 254 ARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVE 313
Query: 387 VMWM 390
+ M
Sbjct: 314 FLSM 317
>gi|293333026|ref|NP_001168271.1| putative HLH DNA-binding domain superfamily protein isoform 1 [Zea
mays]
gi|194707870|gb|ACF88019.1| unknown [Zea mays]
gi|223947139|gb|ACN27653.1| unknown [Zea mays]
gi|414879034|tpg|DAA56165.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 1
[Zea mays]
gi|414879035|tpg|DAA56166.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 2
[Zea mays]
Length = 460
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 254 ARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVE 313
Query: 387 VMWM 390
+ M
Sbjct: 314 FLSM 317
>gi|21537215|gb|AAM61556.1| unknown [Arabidopsis thaliana]
Length = 288
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 127 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 186
Query: 387 VMWM 390
+ M
Sbjct: 187 FLSM 190
>gi|302790872|ref|XP_002977203.1| hypothetical protein SELMODRAFT_106386 [Selaginella moellendorffii]
gi|300155179|gb|EFJ21812.1| hypothetical protein SELMODRAFT_106386 [Selaginella moellendorffii]
Length = 158
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 60 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 119
Query: 387 VMWM 390
+ M
Sbjct: 120 FLSM 123
>gi|351720977|ref|NP_001237962.1| uncharacterized protein LOC100306638 [Glycine max]
gi|255629145|gb|ACU14917.1| unknown [Glycine max]
Length = 240
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 25/148 (16%)
Query: 260 RGKTETIEPTVTSSSGGSGSSFNRTS---KQSTGDNSLKRKSRDAVDSECQSEAAGFESG 316
+GK T V SS+ + S N + + G +S + D +E ++ + G
Sbjct: 40 KGKDSTAADEVLSSTTTANLSNNDSGSNKRMKVGGSSFEN---DGFKAEAEASSVG---- 92
Query: 317 AGNKTAQRSGS-------------CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
GNK++++S RR +A + H+L+ER RR++I+E+M+ LQ+L P CN
Sbjct: 93 -GNKSSEQSNKPCEAPKPDYIHVRARRGQATDSHSLAERARREKISERMKILQDLAPGCN 151
Query: 364 KT-DKASMLDEAIEYLKSLQLQLQVMWM 390
K KA +LDE I Y++SLQ Q++ + M
Sbjct: 152 KVIGKALVLDEIINYIQSLQRQVEFLSM 179
>gi|242059665|ref|XP_002458978.1| hypothetical protein SORBIDRAFT_03g043690 [Sorghum bicolor]
gi|241930953|gb|EES04098.1| hypothetical protein SORBIDRAFT_03g043690 [Sorghum bicolor]
Length = 484
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 282 ARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVE 341
Query: 387 VMWM 390
+ M
Sbjct: 342 FLSM 345
>gi|30696324|ref|NP_849829.1| transcription factor BPE [Arabidopsis thaliana]
gi|122222656|sp|Q0JXE7.1|BPE_ARATH RecName: Full=Transcription factor BPE; AltName: Full=Basic
helix-loop-helix protein 31; Short=AtbHLH31; Short=bHLH
31; AltName: Full=Protein BIG PETAL; AltName:
Full=Transcription factor EN 88; AltName: Full=bHLH
transcription factor bHLH031
gi|113431920|emb|CAK32499.1| basic helix loop helix protein [Arabidopsis thaliana]
gi|332195477|gb|AEE33598.1| transcription factor BPE [Arabidopsis thaliana]
Length = 343
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 30/196 (15%)
Query: 226 SHCGSNQVAYDLDMSRAS-------SSGLNDDVRKVISPS-ERGKTETIEPTVTSSSGGS 277
S G NQ D D++ A+ S L+ V + IS + +R + E+ + S+ G S
Sbjct: 36 SFVGPNQFG-DADLTTAANGDPARMSHALSQAVIEGISGAWKRREDESKSAKIVSTIGAS 94
Query: 278 GSSFNRTSKQSTGDNSLKRKSRDAV-DSECQSEAAGFESGAGNKTAQRSGS-----CRRS 331
G+N KR+ D V D + ++E+ G E+ + + + RR
Sbjct: 95 -----------EGEN--KRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKDYIHVRARRG 141
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM 390
+A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++ + M
Sbjct: 142 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 201
Query: 391 G-SGMAPLMFPGMQHY 405
+ M PG++ +
Sbjct: 202 KLEAVNSRMNPGIEVF 217
>gi|390979910|gb|AFM30927.1| basic helix-loop-helix [Solanum lycopersicum]
Length = 330
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 155 ARRGQATDSHSLAERVRREKISERMKILQSLVPGCDKVTGKALMLDEIINYVQSLQNQVE 214
Query: 387 VMWMG-SGMAPLMF 399
+ M + + P+ +
Sbjct: 215 FLSMKLTSLNPMYY 228
>gi|449440736|ref|XP_004138140.1| PREDICTED: transcription factor bHLH79-like [Cucumis sativus]
gi|449477343|ref|XP_004154996.1| PREDICTED: transcription factor bHLH79-like [Cucumis sativus]
Length = 276
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 149 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 208
Query: 387 VMWM 390
+ M
Sbjct: 209 FLSM 212
>gi|357159196|ref|XP_003578371.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 372
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I KM+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 179 ARRGQATDSHSLAERVRREKITIKMKMLQDLVPGCNKVIGKALMLDEIINYVQSLQQQVE 238
Query: 387 VMWM 390
+ M
Sbjct: 239 FLSM 242
>gi|222635385|gb|EEE65517.1| hypothetical protein OsJ_20959 [Oryza sativa Japonica Group]
Length = 545
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 370 ARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 429
Query: 387 VMWM 390
+ M
Sbjct: 430 FLSM 433
>gi|414591902|tpg|DAA42473.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 251
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+++P CNK KAS+LDE I Y++SLQ Q++
Sbjct: 125 ARRGQATDSHSLAERARREKISERMKVLQDIVPGCNKVIGKASVLDEIINYIQSLQRQVE 184
Query: 387 VMWM 390
+ M
Sbjct: 185 FLSM 188
>gi|222641764|gb|EEE69896.1| hypothetical protein OsJ_29731 [Oryza sativa Japonica Group]
Length = 809
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 632 RRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 691
Query: 388 MWM 390
+ M
Sbjct: 692 LSM 694
>gi|219363183|ref|NP_001136483.1| uncharacterized protein LOC100216597 [Zea mays]
gi|194695886|gb|ACF82027.1| unknown [Zea mays]
gi|413920793|gb|AFW60725.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 469
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 259 RRGQATDSHSLAERVRREKIGERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 318
Query: 388 MWM 390
+ M
Sbjct: 319 LSM 321
>gi|357119169|ref|XP_003561318.1| PREDICTED: transcription factor bHLH79-like [Brachypodium
distachyon]
Length = 240
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 15/111 (13%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS-------------CRRSRAAEVHNLS 340
LK+ D+ D ++ A +SG +K R+ + RR +A + H+++
Sbjct: 68 LKKMESDSADGNLRTNAQ-TDSGNASKVVDRNPTPPEPPKQDYIHVRARRGQATDSHSIA 126
Query: 341 ERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM 390
ER RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y+++LQ Q++ + M
Sbjct: 127 ERARREKISERMKMLQDLVPGCNKVIGKASVLDEIINYIQALQRQVEFLSM 177
>gi|326496517|dbj|BAJ94720.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 261
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 26/190 (13%)
Query: 253 KVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAG 312
K+ + R K E T T+S G +G R KQ+ G S KS+ E +
Sbjct: 13 KIEDETVRPKVEEEAATATASDGSAGG--ERGRKQAKGKVS---KSKQPAADEPPRDYVH 67
Query: 313 FESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASML 371
+ RR +A + H+L+ER RR++I KM+ LQ+L+P CNK KA ML
Sbjct: 68 VRA-------------RRGQATDSHSLAERVRREKITLKMKMLQDLVPGCNKVIGKALML 114
Query: 372 DEAIEYLKSLQLQLQVMWMG-SGMAP-LMFPGMQHYMSR-MGMGMGPPPLPSVTNPMHFS 428
DE I Y++SLQ Q++ + M S + P L F + + + + M +GP S P+ +
Sbjct: 115 DEIINYVQSLQQQVEFLSMKLSTVNPQLDFDTLSNLLHKDMNQALGPS--ASTVFPLESA 172
Query: 429 RV--PLVDQS 436
PL DQ+
Sbjct: 173 GTVYPLCDQA 182
>gi|194699354|gb|ACF83761.1| unknown [Zea mays]
Length = 353
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 17/155 (10%)
Query: 248 NDDVRKVISP--SERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSE 305
+D+VRK +P G E + G G + + D+ +K K + S+
Sbjct: 73 DDNVRKRKAPPTGSAGGKEACPGKAAEAKGPDG----KRCRVGGSDSPVKPKVEEVAASD 128
Query: 306 CQSEAAGFESGAGNKTAQRSGS---------CRRSRAAEVHNLSERRRRDRINEKMRALQ 356
E + G G KTA+ + RR +A + H+L+ER RR++I+++M+ LQ
Sbjct: 129 ASVELKAQKKGKG-KTAKPAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQ 187
Query: 357 ELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
+L+P CNK KA MLDE I Y++SLQ Q++ + M
Sbjct: 188 DLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSM 222
>gi|3193326|gb|AAC19308.1| contains similarity to transcriptional activators such as Ra-like
and myc-like regulatory R proteins [Arabidopsis
thaliana]
gi|7267092|emb|CAB80763.1| putative transcriptional regulator [Arabidopsis thaliana]
Length = 329
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 40/46 (86%)
Query: 343 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+RRD+IN++M+ LQ+L+P+ +KTDKASMLDE IEYLK LQ Q+ +M
Sbjct: 154 KRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVSMM 199
>gi|194692938|gb|ACF80553.1| unknown [Zea mays]
gi|414886197|tpg|DAA62211.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 353
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 17/155 (10%)
Query: 248 NDDVRKVISP--SERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSE 305
+D+VRK +P G E + G G + + D+ +K K + S+
Sbjct: 73 DDNVRKRKAPPTGSAGGKEACPGKAAEAKGPDG----KRCRVGGSDSPVKPKVEEVAASD 128
Query: 306 CQSEAAGFESGAGNKTAQRSGS---------CRRSRAAEVHNLSERRRRDRINEKMRALQ 356
E + G G KTA+ + RR +A + H+L+ER RR++I+++M+ LQ
Sbjct: 129 ASVELKAQKKGKG-KTAKPAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQ 187
Query: 357 ELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
+L+P CNK KA MLDE I Y++SLQ Q++ + M
Sbjct: 188 DLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSM 222
>gi|414886196|tpg|DAA62210.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 354
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 17/155 (10%)
Query: 248 NDDVRKVISP--SERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSE 305
+D+VRK +P G E + G G + + D+ +K K + S+
Sbjct: 73 DDNVRKRKAPPTGSAGGKEACPGKAAEAKGPDG----KRCRVGGSDSPVKPKVEEVAASD 128
Query: 306 CQSEAAGFESGAGNKTAQRSGS---------CRRSRAAEVHNLSERRRRDRINEKMRALQ 356
E + G G KTA+ + RR +A + H+L+ER RR++I+++M+ LQ
Sbjct: 129 ASVELKAQKKGKG-KTAKPAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQ 187
Query: 357 ELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
+L+P CNK KA MLDE I Y++SLQ Q++ + M
Sbjct: 188 DLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSM 222
>gi|356500821|ref|XP_003519229.1| PREDICTED: transcription factor BPE-like [Glycine max]
Length = 260
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q +
Sbjct: 135 ARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLQRQAE 194
Query: 387 VMWM 390
+ M
Sbjct: 195 FLSM 198
>gi|168039065|ref|XP_001772019.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676620|gb|EDQ63100.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 147
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 57 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVES 116
Query: 388 MWM 390
+ M
Sbjct: 117 LSM 119
>gi|4006909|emb|CAB16839.1| putative protein [Arabidopsis thaliana]
gi|7270602|emb|CAB80320.1| putative protein [Arabidopsis thaliana]
Length = 300
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 139 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 198
Query: 387 VMWM 390
+ M
Sbjct: 199 FLSM 202
>gi|224119176|ref|XP_002318005.1| predicted protein [Populus trichocarpa]
gi|222858678|gb|EEE96225.1| predicted protein [Populus trichocarpa]
Length = 272
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 17/102 (16%)
Query: 303 DSECQSEAAGFESGAGNKTAQRSGS-------------CRRSRAAEVHNLSERRRRDRIN 349
DS + EA+ S A NK A+ S RR +A + H+L+ER RR+RI
Sbjct: 110 DSRAEIEAS---SAANNKPAEPSSKPSEPPMQDYIHVRSRRGQATDSHSLAERARRERIG 166
Query: 350 EKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWM 390
E+M+ LQ+L+P CNK KA LDE I Y++SLQ Q++ + M
Sbjct: 167 ERMKILQDLVPGCNKVIGKALALDEIINYIQSLQCQVEFLSM 208
>gi|15451016|gb|AAK96779.1| Unknown protein [Arabidopsis thaliana]
gi|23198360|gb|AAN15707.1| Unknown protein [Arabidopsis thaliana]
Length = 304
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 143 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 202
Query: 387 VMWM 390
+ M
Sbjct: 203 FLSM 206
>gi|357130181|ref|XP_003566729.1| PREDICTED: uncharacterized protein LOC100831834 [Brachypodium
distachyon]
Length = 298
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 27/189 (14%)
Query: 235 YDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSL 294
+D D + +++ DD R+++S G T GS+ KQ D S
Sbjct: 74 FDEDEALLAAAVGGDDKRRMVSIERSGTTSL------------GSAQEMVGKQLHMDGSR 121
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS------CRRSRAAEVHNLSERRRRDRI 348
K + + V S E E G + + + + +R +A + H+L+ER RR++I
Sbjct: 122 KHQRNNNVAS--VKEKRPREHGGADVDVKEAPAGYIHVRAKRGQARDSHSLAERVRREKI 179
Query: 349 NEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMFPGMQHYM 406
+EKM LQ L+P C+K T KA MLDE I Y++SLQ Q++ + M + + P+M Y
Sbjct: 180 SEKMLLLQSLVPGCDKVTGKAMMLDEIISYVQSLQNQVEFLSMKLASLNPMMM-----YE 234
Query: 407 SRMGMGMGP 415
+ +GM P
Sbjct: 235 FGVDIGMYP 243
>gi|296086467|emb|CBI32056.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 84 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 143
Query: 387 VMWM 390
+ M
Sbjct: 144 FLSM 147
>gi|449458041|ref|XP_004146756.1| PREDICTED: transcription factor BPE-like [Cucumis sativus]
Length = 298
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 173 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 232
Query: 387 VMWM 390
+ M
Sbjct: 233 FLSM 236
>gi|222619751|gb|EEE55883.1| hypothetical protein OsJ_04533 [Oryza sativa Japonica Group]
Length = 483
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 14/91 (15%)
Query: 314 ESGAGNKTAQRSGS-------------CRRSRAAEVHNLSERRRRDRINEKMRALQELIP 360
E+G G K + S S RR A + H+L+ER RR++I+++M+ LQ+L+P
Sbjct: 254 ENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVP 313
Query: 361 HCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
CNK KA MLDE I Y++SLQ Q++ + M
Sbjct: 314 GCNKVVGKAVMLDEIINYVQSLQRQVEFLSM 344
>gi|118486023|gb|ABK94855.1| unknown [Populus trichocarpa]
Length = 348
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 152 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 211
Query: 387 VMWM 390
+ M
Sbjct: 212 FLSM 215
>gi|15234436|ref|NP_195372.1| transcription factor BEE 2 [Arabidopsis thaliana]
gi|75305715|sp|Q93VJ4.1|BEE2_ARATH RecName: Full=Transcription factor BEE 2; AltName: Full=Basic
helix-loop-helix protein 58; Short=AtbHLH58; Short=bHLH
58; AltName: Full=Protein Brassinosteroid enhanced
expression 2; AltName: Full=Transcription factor EN 80;
AltName: Full=bHLH transcription factor bHLH058
gi|13877937|gb|AAK44046.1|AF370231_1 unknown protein [Arabidopsis thaliana]
gi|16323468|gb|AAL15228.1| unknown protein [Arabidopsis thaliana]
gi|332661269|gb|AEE86669.1| transcription factor BEE 2 [Arabidopsis thaliana]
Length = 304
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 143 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 202
Query: 387 VMWM 390
+ M
Sbjct: 203 FLSM 206
>gi|20127056|gb|AAM10947.1|AF488591_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 304
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 143 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 202
Query: 387 VMWM 390
+ M
Sbjct: 203 FLSM 206
>gi|297802298|ref|XP_002869033.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297314869|gb|EFH45292.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 304
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 144 RRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEF 203
Query: 388 MWM 390
+ M
Sbjct: 204 LSM 206
>gi|295913405|gb|ADG57955.1| transcription factor [Lycoris longituba]
Length = 186
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y+++LQ Q++
Sbjct: 61 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVE 120
Query: 387 VMWM 390
+ M
Sbjct: 121 FLSM 124
>gi|388503848|gb|AFK39990.1| unknown [Lotus japonicus]
Length = 248
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 121 ARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVE 180
Query: 387 VMWM 390
+ M
Sbjct: 181 FLSM 184
>gi|168023966|ref|XP_001764508.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684372|gb|EDQ70775.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 679
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C K T KA MLDE I Y++SLQ Q++
Sbjct: 390 ARRGQATDSHSLAERVRREKISERMKYLQDLVPGCRKVTGKAVMLDEIINYVQSLQRQVE 449
Query: 387 VMWM 390
+ M
Sbjct: 450 SLSM 453
>gi|168056950|ref|XP_001780480.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668066|gb|EDQ54681.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 221
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 66 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 125
Query: 387 VMWM 390
+ M
Sbjct: 126 FLSM 129
>gi|147774847|emb|CAN69076.1| hypothetical protein VITISV_004761 [Vitis vinifera]
Length = 302
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
Query: 387 VMWM 390
+ M
Sbjct: 213 FLSM 216
>gi|168056080|ref|XP_001780050.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668548|gb|EDQ55153.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 71 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKITGKAVMLDEIINYVQSLQRQIE 130
Query: 387 VMWM 390
+ M
Sbjct: 131 FLSM 134
>gi|413956455|gb|AFW89104.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 239
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMR 353
L+ ++R + E E A + + +R +A H+L+ER RR++IN +M+
Sbjct: 122 LQDEARALLQREVSMECADENAAGAKREDYAHVRAKRGQATNSHSLAERFRREKINVRMK 181
Query: 354 ALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
LQ+L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 182 LLQDLVPGCNKITGKAMMLDEIINYVQSLQRQVEFLSM 219
>gi|242084070|ref|XP_002442460.1| hypothetical protein SORBIDRAFT_08g020330 [Sorghum bicolor]
gi|241943153|gb|EES16298.1| hypothetical protein SORBIDRAFT_08g020330 [Sorghum bicolor]
Length = 373
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 19/105 (18%)
Query: 324 RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
R G CR +RRR +INE+++ LQ+L+P C+K+++AS LD+ I Y+KSLQ
Sbjct: 216 RIGPCR-----------AQRRRHKINERLKTLQQLVPGCSKSNQASTLDQTIHYMKSLQH 264
Query: 384 QLQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPP---PLPSVTNPM 425
Q+Q M +G +P ++P +Q GM +G P P P+ P+
Sbjct: 265 QVQAMSVGLA-SPAVYPVVQ----PQGMPLGTPVAMPFPAAHPPV 304
>gi|357115005|ref|XP_003559284.1| PREDICTED: transcription factor bHLH79-like [Brachypodium
distachyon]
Length = 243
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I E+M+ LQ+L+P CNK KAS+LDE I Y+++L+ Q++
Sbjct: 116 ARRGQATDSHSLAERARREKITERMKILQDLVPGCNKVIGKASVLDEIINYVQALERQVE 175
Query: 387 VMWM 390
+ M
Sbjct: 176 FLSM 179
>gi|3522944|gb|AAC34226.1| hypothetical protein [Arabidopsis thaliana]
Length = 394
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 31/145 (21%)
Query: 276 GSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQ-----RSGSCRR 330
S S F+R + + SLKRK D + E + + + + Q R +R
Sbjct: 168 ASSSKFSRGTSRDLSCCSLKRKYGDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKR 227
Query: 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM 390
R+ EVH L ER DKAS+LDEAI+Y+++LQLQ+Q+M M
Sbjct: 228 KRSTEVHKLYER----------------------DDKASLLDEAIKYMRTLQLQVQMMSM 265
Query: 391 GSGMA--PLMFPGMQHYMSRMGMGM 413
G+G+ P M P M HY S MG+GM
Sbjct: 266 GNGLIRPPTMLP-MGHY-SPMGLGM 288
>gi|115477012|ref|NP_001062102.1| Os08g0487700 [Oryza sativa Japonica Group]
gi|42408258|dbj|BAD09414.1| bHLH transcription factor-like [Oryza sativa Japonica Group]
gi|113624071|dbj|BAF24016.1| Os08g0487700 [Oryza sativa Japonica Group]
gi|125561978|gb|EAZ07426.1| hypothetical protein OsI_29678 [Oryza sativa Indica Group]
gi|125603820|gb|EAZ43145.1| hypothetical protein OsJ_27735 [Oryza sativa Japonica Group]
Length = 365
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLD 372
++G K R+ +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLD
Sbjct: 164 DAGEAQKEGYSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLD 223
Query: 373 EAIEYLKSLQLQLQVMWM 390
E I Y++SLQ Q++ + M
Sbjct: 224 EIINYVQSLQRQVEFLSM 241
>gi|357437591|ref|XP_003589071.1| Transcription factor bHLH85 [Medicago truncatula]
gi|357437635|ref|XP_003589093.1| Transcription factor bHLH85 [Medicago truncatula]
gi|355478119|gb|AES59322.1| Transcription factor bHLH85 [Medicago truncatula]
gi|355478141|gb|AES59344.1| Transcription factor bHLH85 [Medicago truncatula]
Length = 375
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 314 ESGAGNKTAQRSGSCRRSR--AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
+ +G T +G R SR A + +L R+RR+RINE++R LQ L+P+ K D ++ML
Sbjct: 260 QENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTML 319
Query: 372 DEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHY 405
+EA+ Y+K LQ Q++V +G + L M Y
Sbjct: 320 EEAVNYVKFLQTQIKVCTIGDIIYLLSSDDMWMY 353
>gi|357117083|ref|XP_003560304.1| PREDICTED: transcription factor bHLH74-like isoform 1 [Brachypodium
distachyon]
Length = 326
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 234 AYDLDMS------RASSSGLNDDVRKVISPSERGK--------TETIEPTVTSSSGGSGS 279
AY +++ R+SS + +++ + PS K T + P+ +S G
Sbjct: 44 AYSMELEERPGPYRSSSGTFSQNIQLSVEPSGVVKKRKGIDDCTSLLNPSASSRMQNVGD 103
Query: 280 SFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNL 339
S Q T NSL+ + + + +++ G G K +R +A H+L
Sbjct: 104 QQTEVSSQ-TERNSLEENRTISPKMQSKEDSS---DGDGTKEDYVHIRAKRGQATNSHSL 159
Query: 340 SERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
+ER RR +I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++ + M
Sbjct: 160 AERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSM 211
>gi|20127058|gb|AAM10948.1|AF488592_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 310
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 18/138 (13%)
Query: 276 GSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFE---------SGAGNKTAQRSG 326
G G F R G S KR S D VD+ C S F S T+ R
Sbjct: 89 GKGPGFLRPEG---GHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPR 145
Query: 327 -SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL 385
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+M+DE ++Y+K L+LQ+
Sbjct: 146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQV 205
Query: 386 QVMWM----GSG-MAPLM 398
+V+ M G+G +APL+
Sbjct: 206 KVLSMSRLGGAGAVAPLV 223
>gi|77556222|gb|ABA99018.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
gi|125579480|gb|EAZ20626.1| hypothetical protein OsJ_36241 [Oryza sativa Japonica Group]
Length = 198
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 9/81 (11%)
Query: 325 SGSCRRSRAAEV-HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
S +C+ S +AE + + RR RINE++R LQELIP+ K D ++ML+EAI+Y+K L L
Sbjct: 106 SKACKHSVSAESSQSYYAKNRRQRINERLRILQELIPNGTKVDISTMLEEAIQYVKFLHL 165
Query: 384 QLQV-----MWMGSGMAPLMF 399
Q+++ MWM APL F
Sbjct: 166 QIKLLSSDEMWM---YAPLAF 183
>gi|224094803|ref|XP_002310242.1| predicted protein [Populus trichocarpa]
gi|222853145|gb|EEE90692.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I++KM+ LQ+L+P CNK T +A MLDE I Y++SLQ Q++
Sbjct: 40 RRGQATDSHSLAERARREKISKKMKCLQDLVPGCNKITGRAGMLDEIINYVQSLQRQVEF 99
Query: 388 MWM 390
+ M
Sbjct: 100 ISM 102
>gi|253761888|ref|XP_002489318.1| hypothetical protein SORBIDRAFT_0010s017130 [Sorghum bicolor]
gi|241946966|gb|EES20111.1| hypothetical protein SORBIDRAFT_0010s017130 [Sorghum bicolor]
Length = 324
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 242 RRGQATDSHSLAERVRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 301
Query: 388 MWM 390
+ M
Sbjct: 302 LSM 304
>gi|18411987|ref|NP_567245.1| transcription factor UNE12 [Arabidopsis thaliana]
gi|79324985|ref|NP_001031577.1| transcription factor UNE12 [Arabidopsis thaliana]
gi|75277341|sp|O22768.2|UNE12_ARATH RecName: Full=Transcription factor UNE12; AltName: Full=Basic
helix-loop-helix protein 59; Short=AtbHLH59; Short=bHLH
59; AltName: Full=Protein UNFERTILIZED EMBRYO SAC 12;
AltName: Full=Transcription factor EN 93; AltName:
Full=bHLH transcription factor bHLH059
gi|13605859|gb|AAK32915.1|AF367328_1 AT4g02590/T10P11_13 [Arabidopsis thaliana]
gi|3892050|gb|AAC78259.1| hypothetical protein [Arabidopsis thaliana]
gi|7269019|emb|CAB80752.1| hypothetical protein [Arabidopsis thaliana]
gi|23506061|gb|AAN28890.1| At4g02590/T10P11_13 [Arabidopsis thaliana]
gi|222422973|dbj|BAH19471.1| AT4G02590 [Arabidopsis thaliana]
gi|332656799|gb|AEE82199.1| transcription factor UNE12 [Arabidopsis thaliana]
gi|332656800|gb|AEE82200.1| transcription factor UNE12 [Arabidopsis thaliana]
Length = 310
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 18/138 (13%)
Query: 276 GSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFE---------SGAGNKTAQRSG 326
G G F R G S KR S D VD+ C S F S T+ R
Sbjct: 89 GKGPGFLRPEG---GHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPR 145
Query: 327 -SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL 385
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+M+DE ++Y+K L+LQ+
Sbjct: 146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQV 205
Query: 386 QVMWM----GSG-MAPLM 398
+V+ M G+G +APL+
Sbjct: 206 KVLSMSRLGGAGAVAPLV 223
>gi|356498105|ref|XP_003517894.1| PREDICTED: transcription factor BPE-like [Glycine max]
Length = 264
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+++P CNK KA +LDE I Y++SLQ Q++
Sbjct: 139 ARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQRQVE 198
Query: 387 VMWM 390
+ M
Sbjct: 199 FLSM 202
>gi|357444405|ref|XP_003592480.1| Transcription factor bHLH84 [Medicago truncatula]
gi|355481528|gb|AES62731.1| Transcription factor bHLH84 [Medicago truncatula]
Length = 330
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 59/97 (60%), Gaps = 11/97 (11%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
C A++ + ++RR+RINE+++ LQ L+P+ K D ++ML+EA++Y+K LQ+Q+++
Sbjct: 240 CNGGSASDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKL 299
Query: 388 M-----WMGSGMAPLMFPGMQHYMSRMGMGMGPPPLP 419
+ WM AP+ + GM + + + P LP
Sbjct: 300 LSSDDHWM---YAPIAYNGMN---IGLNLNIIPTELP 330
>gi|186511471|ref|NP_001118919.1| transcription factor UNE12 [Arabidopsis thaliana]
gi|332656801|gb|AEE82201.1| transcription factor UNE12 [Arabidopsis thaliana]
Length = 247
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 82/146 (56%), Gaps = 18/146 (12%)
Query: 268 PTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFE---------SGAG 318
P S G G F R G S KR S D VD+ C S F S
Sbjct: 18 PLGLSLDQGKGPGFLRPEG---GHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPH 74
Query: 319 NKTAQRSG-SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
T+ R RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+M+DE ++Y
Sbjct: 75 QPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDY 134
Query: 378 LKSLQLQLQVMWM----GSG-MAPLM 398
+K L+LQ++V+ M G+G +APL+
Sbjct: 135 VKFLRLQVKVLSMSRLGGAGAVAPLV 160
>gi|356562791|ref|XP_003549652.1| PREDICTED: transcription factor bHLH79-like [Glycine max]
Length = 229
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+++P CNK KA +LDE I Y++SLQ Q++
Sbjct: 102 ARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQHQVE 161
Query: 387 VMWM 390
+ M
Sbjct: 162 FLSM 165
>gi|297809891|ref|XP_002872829.1| hypothetical protein ARALYDRAFT_490301 [Arabidopsis lyrata subsp.
lyrata]
gi|297318666|gb|EFH49088.1| hypothetical protein ARALYDRAFT_490301 [Arabidopsis lyrata subsp.
lyrata]
Length = 310
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 18/138 (13%)
Query: 276 GSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFE---------SGAGNKTAQRSG 326
G G F R G S KR S D VD+ C S F S T+ R
Sbjct: 89 GKGPGFLRPEG---GHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPAPSAPHQPTSIRPR 145
Query: 327 -SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL 385
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+M+DE ++Y+K L+LQ+
Sbjct: 146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQV 205
Query: 386 QVMWM----GSG-MAPLM 398
+V+ M G+G +APL+
Sbjct: 206 KVLSMSRLGGAGAVAPLV 223
>gi|226497606|ref|NP_001151910.1| BHLH transcription factor [Zea mays]
gi|195650891|gb|ACG44913.1| BHLH transcription factor [Zea mays]
Length = 354
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 248 NDDVRKVISP--SERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSE 305
+D+VRK P G E + G G + + D+ +K K + S+
Sbjct: 73 DDNVRKRKEPPTGSAGGKEACPGKAAEAKGPDG----KRCRVGGSDSPVKPKVEEVAASD 128
Query: 306 CQSEAAGFESGAGNKTAQRSGS---------CRRSRAAEVHNLSERRRRDRINEKMRALQ 356
E + G G KTA+ + RR +A + H+L+ER RR++I+++M+ LQ
Sbjct: 129 ASVELKAQKKGKG-KTAKPAVEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKFLQ 187
Query: 357 ELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
+L+P CNK KA MLDE I Y++SLQ Q++ + M
Sbjct: 188 DLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSM 222
>gi|357117085|ref|XP_003560305.1| PREDICTED: transcription factor bHLH74-like isoform 2 [Brachypodium
distachyon]
Length = 317
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEA 374
G G K +R +A H+L+ER RR +I+E+M+ LQ+L+P C+K T KA MLDE
Sbjct: 130 GDGTKEDYVHIRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEI 189
Query: 375 IEYLKSLQLQLQVMWM 390
I Y++SLQ Q++ + M
Sbjct: 190 INYVQSLQRQVEFLSM 205
>gi|20127068|gb|AAM10953.1|AF488597_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 320
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++ LQ Q++
Sbjct: 170 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 229
Query: 387 VMWM 390
+ M
Sbjct: 230 FLSM 233
>gi|30680338|ref|NP_849976.1| transcription factor bHLH64 [Arabidopsis thaliana]
gi|218563534|sp|Q9ZPW3.3|BH064_ARATH RecName: Full=Transcription factor bHLH64; AltName: Full=Basic
helix-loop-helix protein 64; Short=AtbHLH64; Short=bHLH
64; AltName: Full=Transcription factor EN 79; AltName:
Full=bHLH transcription factor bHLH064
gi|330251659|gb|AEC06753.1| transcription factor bHLH64 [Arabidopsis thaliana]
Length = 337
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++ LQ Q++
Sbjct: 187 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246
Query: 387 VMWM 390
+ M
Sbjct: 247 FLSM 250
>gi|414589882|tpg|DAA40453.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 329
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 159 RRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEF 218
Query: 388 MWM 390
+ M
Sbjct: 219 LSM 221
>gi|297819388|ref|XP_002877577.1| hypothetical protein ARALYDRAFT_347878 [Arabidopsis lyrata subsp.
lyrata]
gi|297323415|gb|EFH53836.1| hypothetical protein ARALYDRAFT_347878 [Arabidopsis lyrata subsp.
lyrata]
Length = 260
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 28/151 (18%)
Query: 267 EPTVTSSSGGSGSSFNRTSKQS---------TGDNSLKRKSRDAVDSECQSEAAGFE--- 314
E TVT +GG TS+ T N LK S+ + C SE +
Sbjct: 56 ESTVTEQTGGGRKRRALTSQDESSKMMFSSCTSVNRLKESSKKKMKV-CLSEGETEDGLR 114
Query: 315 ------SGAGNKTAQRSG--------SCRRSRAAEVHNLSERRRRDRINEKMRALQELIP 360
SG G+K + RR +A + H+L+ER RR++I+E+M+ LQ+LIP
Sbjct: 115 REGETSSGGGSKETEEKSPLKDYIHVRARRGQATDRHSLAERARREKISERMKFLQDLIP 174
Query: 361 HCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
CNK KA +LDE I Y++SLQ Q++ + M
Sbjct: 175 GCNKIIGKALVLDEIINYIQSLQRQVEFLSM 205
>gi|449520908|ref|XP_004167474.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 341
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR RAA H+L+ER RR++I+E+M+ LQ+L+P C++ T K +LDE I Y++SLQ Q+++
Sbjct: 208 RRGRAANNHSLAERVRREKISERMKLLQQLVPGCHQITGKTVVLDEIINYVQSLQQQVEL 267
Query: 388 MWM 390
+ M
Sbjct: 268 LSM 270
>gi|388498252|gb|AFK37192.1| unknown [Lotus japonicus]
Length = 220
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 93 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVE 152
Query: 387 VMWM 390
+ M
Sbjct: 153 FLSM 156
>gi|242069235|ref|XP_002449894.1| hypothetical protein SORBIDRAFT_05g025230 [Sorghum bicolor]
gi|241935737|gb|EES08882.1| hypothetical protein SORBIDRAFT_05g025230 [Sorghum bicolor]
Length = 242
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 52/73 (71%), Gaps = 8/73 (10%)
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-----W 389
++ +L +RRR+RINE++R LQ+LIP+ K D ++ML+EA++Y+K LQLQ++++ W
Sbjct: 160 DLQSLYAKRRRERINERLRTLQQLIPNGTKVDMSTMLEEAVQYVKFLQLQIKLLSSEDTW 219
Query: 390 MGSGMAPLMFPGM 402
M APL + M
Sbjct: 220 M---YAPLAYNHM 229
>gi|212723614|ref|NP_001131789.1| uncharacterized protein LOC100193160 [Zea mays]
gi|194692538|gb|ACF80353.1| unknown [Zea mays]
gi|414872589|tpg|DAA51146.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 316
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEA 374
G G K +R +A H+L+ER RR +I+E+M+ LQ+L+P C+K T KA MLDE
Sbjct: 128 GDGTKEDYVHIRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEI 187
Query: 375 IEYLKSLQLQLQVMWM 390
I Y++SLQ Q++ + M
Sbjct: 188 INYVQSLQRQVEFLSM 203
>gi|18398703|ref|NP_565434.1| transcription factor bHLH64 [Arabidopsis thaliana]
gi|15724318|gb|AAL06552.1|AF412099_1 At2g18300/T30D6.19 [Arabidopsis thaliana]
gi|18700242|gb|AAL77731.1| At2g18300/T30D6.19 [Arabidopsis thaliana]
gi|20197806|gb|AAD15506.2| expressed protein [Arabidopsis thaliana]
gi|330251658|gb|AEC06752.1| transcription factor bHLH64 [Arabidopsis thaliana]
Length = 335
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++ LQ Q++
Sbjct: 187 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246
Query: 387 VMWM 390
+ M
Sbjct: 247 FLSM 250
>gi|356500809|ref|XP_003519223.1| PREDICTED: transcription factor BPE-like [Glycine max]
Length = 255
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 130 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 189
Query: 387 VMWM 390
+ M
Sbjct: 190 FLSM 193
>gi|449533777|ref|XP_004173848.1| PREDICTED: transcription factor BPE-like, partial [Cucumis sativus]
Length = 174
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 49 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 108
Query: 387 VMWM 390
+ M
Sbjct: 109 FLSM 112
>gi|413933172|gb|AFW67723.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 284
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEA 374
G G K +R +A H+L+ER RR +I+E+M+ LQ+L+P C+K T KA MLDE
Sbjct: 96 GDGTKEDYVHIRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEI 155
Query: 375 IEYLKSLQLQLQVMWM 390
I Y++SLQ Q++ + M
Sbjct: 156 INYVQSLQRQVEFLSM 171
>gi|20197630|gb|AAD22130.2| expressed protein [Arabidopsis thaliana]
gi|23297067|gb|AAN13083.1| unknown protein [Arabidopsis thaliana]
Length = 279
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 8 WNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLR 67
W+FE + +S + + +ELVELLW++G VVL SQ H E Q QKQ
Sbjct: 6 WSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQT---------HREQTQTQKQD-- 54
Query: 68 GSGSCGNSSNLIQDDETVSWI-HCPIEDSFE-KDFYSQLFSELPP 110
SS ++D ETVSWI + P ED FE DF S FS + P
Sbjct: 55 HHEEALRSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMDP 99
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 207 SGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETI 266
S + + E+ + S+ TVG SHCGSN DLD+S + N + + ++P+ +
Sbjct: 145 SSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMSHDRSKN--IEEKLNPNASSSSGGS 202
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG 326
+S + T D KRK + D E+ GNK+ QRSG
Sbjct: 203 SGCSFGKDIKEMAS----GRCITTDR--KRKRINHTD-----ESVSLSDAIGNKSNQRSG 251
Query: 327 SCRRSRAAEVHNLSER 342
S RRSRAAEVHNLSER
Sbjct: 252 SNRRSRAAEVHNLSER 267
>gi|224135389|ref|XP_002322061.1| predicted protein [Populus trichocarpa]
gi|222869057|gb|EEF06188.1| predicted protein [Populus trichocarpa]
Length = 270
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 21/126 (16%)
Query: 295 KRKSRDAVDSECQSEAAGF-ESGAGNKTAQRSGS-------------------CRRSRAA 334
KR++ D +S C + ESG+ + + R G RR +A
Sbjct: 106 KRRAMDVSESSCMNSYPRVSESGSKKRKSSRRGKRVKSNEEEEEKTREVVHVRARRGQAT 165
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWMGSG 393
+ H+L+ER RR +INE++R LQ+++P C KT A MLDE I Y++SLQ Q++ + M
Sbjct: 166 DSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLT 225
Query: 394 MAPLMF 399
A +
Sbjct: 226 AASTFY 231
>gi|357520555|ref|XP_003630566.1| BHLH transcription factor [Medicago truncatula]
gi|355524588|gb|AET05042.1| BHLH transcription factor [Medicago truncatula]
Length = 327
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C++ T KA +LDE I Y++SLQ Q++
Sbjct: 147 ARRGQATDSHSLAERVRREKISERMKILQQLVPGCDRVTGKALVLDEIINYVQSLQNQVE 206
Query: 387 VMWMG-SGMAPLMF 399
+ M + + P+ F
Sbjct: 207 FLSMKLASVNPIFF 220
>gi|413920794|gb|AFW60726.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 328
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++V
Sbjct: 259 RRGQATDSHSLAERVRREKIGERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEV 318
>gi|13430618|gb|AAK25931.1|AF360221_1 unknown protein [Arabidopsis thaliana]
Length = 279
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 8 WNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLR 67
W+FE + +S + + +ELVELLW++G VVL SQ H E Q QKQ
Sbjct: 6 WSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQT---------HREQTQTQKQD-- 54
Query: 68 GSGSCGNSSNLIQDDETVSWI-HCPIEDSFE-KDFYSQLFSELPP 110
SS ++D ETVSWI + P ED FE DF S FS + P
Sbjct: 55 HHEEALRSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMDP 99
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 21/140 (15%)
Query: 207 SGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETI 266
S + + E+ + S+ TVG SHCGSN DLD+S + N + + ++P+
Sbjct: 145 SSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMSHDRSKN--IEEKLNPN-------- 194
Query: 267 EPTVTSSSGGSGSSFNRTSKQSTGDNSL----KRKSRDAVDSECQSEAAGFESGAGNKTA 322
+SS G S SF + K+ + KRK + D E+ GNK+
Sbjct: 195 --ASSSSGGSSSCSFGKDIKEMASGRCITTDRKRKRINHTD-----ESVSLSDAIGNKSN 247
Query: 323 QRSGSCRRSRAAEVHNLSER 342
QRSGS RRSRAAEVHNLSER
Sbjct: 248 QRSGSNRRSRAAEVHNLSER 267
>gi|297836564|ref|XP_002886164.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297332004|gb|EFH62423.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 337
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++ LQ Q++
Sbjct: 187 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246
Query: 387 VMWM 390
+ M
Sbjct: 247 FLSM 250
>gi|242082417|ref|XP_002445977.1| hypothetical protein SORBIDRAFT_07g028945 [Sorghum bicolor]
gi|241942327|gb|EES15472.1| hypothetical protein SORBIDRAFT_07g028945 [Sorghum bicolor]
Length = 343
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 291 DNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS------CRRSRAAEVHNLSERRR 344
D+S +R DA E A + G G A R+ +A H+L+ER R
Sbjct: 133 DSSKERGEDDAKGKEETPPATRKKKGKGASAADGESESYIHVRARKGQATNRHSLAERLR 192
Query: 345 RDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
R++I+E+M+ LQ+L+P C K T KA MLDE I Y++SLQ Q++ + M
Sbjct: 193 REKISERMKLLQDLVPGCTKVTGKAVMLDEIINYVQSLQRQVEFLSM 239
>gi|414872588|tpg|DAA51145.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 209
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEA 374
G G K +R +A H+L+ER RR +I+E+M+ LQ+L+P C+K T KA MLDE
Sbjct: 21 GDGTKEDYVHIRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEI 80
Query: 375 IEYLKSLQLQLQVMWM 390
I Y++SLQ Q++ + M
Sbjct: 81 INYVQSLQRQVEFLSM 96
>gi|413956454|gb|AFW89103.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 263
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 294 LKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG-SCRRSRAAEVHNLSERRRRDRINEKM 352
L+ ++R + E E A E+ AG K + +R +A H+L+ER RR++IN +M
Sbjct: 122 LQDEARALLQREVSMECAD-ENAAGAKREDYAHVRAKRGQATNSHSLAERFRREKINVRM 180
Query: 353 RALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWM 390
+ LQ+L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 181 KLLQDLVPGCNKITGKAMMLDEIINYVQSLQRQVEFLSM 219
>gi|167999578|ref|XP_001752494.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696394|gb|EDQ82733.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 538
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 10/84 (11%)
Query: 315 SGAGNKTAQR-------SGSCRRSRAA---EVHNLSERRRRDRINEKMRALQELIPHCNK 364
SGAG T R C AA E +++ R RR +I+E++R L++LIP NK
Sbjct: 359 SGAGGSTYSRLPGLPEEGRLCNGKPAATSVEPQSVAARHRRKKISERIRVLEKLIPGGNK 418
Query: 365 TDKASMLDEAIEYLKSLQLQLQVM 388
D A+MLDEAIEY+K LQLQ+Q++
Sbjct: 419 MDTATMLDEAIEYVKFLQLQVQIL 442
>gi|293332473|ref|NP_001169219.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
gi|223975629|gb|ACN32002.1| unknown [Zea mays]
gi|414589883|tpg|DAA40454.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 350
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 159 RRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEF 218
Query: 388 MWM 390
+ M
Sbjct: 219 LSM 221
>gi|449437607|ref|XP_004136583.1| PREDICTED: transcription factor bHLH60-like [Cucumis sativus]
gi|449501894|ref|XP_004161487.1| PREDICTED: transcription factor bHLH60-like [Cucumis sativus]
Length = 369
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 287 QSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRD 346
++T S KRK R+ ++ + K RR +A + H+L+ER RR+
Sbjct: 162 ENTNQRSAKRKEREKKGRGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARRE 221
Query: 347 RINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMFPGMQH 404
+IN +M+ LQEL+P CNK A +LDE I +++SLQ Q++ + M + + P + ++
Sbjct: 222 KINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIES 281
Query: 405 YMSRMGMGMGPPPLPSVTNPMHFSRVPL 432
++ + P++ +P+ + +P+
Sbjct: 282 ILATENEPILESNFPTMVSPLMWPEIPV 309
>gi|449450566|ref|XP_004143033.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 341
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR RAA H+L+ER RR++I+E+M+ LQ+L+P C++ T K +LDE I Y++SLQ Q++
Sbjct: 208 RRGRAANNHSLAERVRREKISERMKLLQQLVPGCHQITGKTVVLDEIINYVQSLQQQVEF 267
Query: 388 MWM 390
+ M
Sbjct: 268 LSM 270
>gi|22327541|ref|NP_680385.1| transcription factor bHLH139 [Arabidopsis thaliana]
gi|122213858|sp|Q3E7L7.1|BH139_ARATH RecName: Full=Transcription factor bHLH139; AltName: Full=Basic
helix-loop-helix protein 139; Short=AtbHLH139;
Short=bHLH 139; AltName: Full=Transcription factor EN
116; AltName: Full=bHLH transcription factor bHLH139
gi|332007536|gb|AED94919.1| transcription factor bHLH139 [Arabidopsis thaliana]
Length = 223
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 65/111 (58%), Gaps = 9/111 (8%)
Query: 297 KSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQ 356
+S + +S +A G S K+ +R R A++ +L R+RR+RIN++++ LQ
Sbjct: 104 QSLSSYNSSDDEKALGLVSNTS-KSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQ 162
Query: 357 ELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
L+P+ K D ++ML++A+ Y+K LQLQ+++ +WM APL G+
Sbjct: 163 SLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSSEDLWM---YAPLAHNGL 210
>gi|334184293|ref|NP_001189548.1| transcription factor bHLH64 [Arabidopsis thaliana]
gi|330251660|gb|AEC06754.1| transcription factor bHLH64 [Arabidopsis thaliana]
Length = 364
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y++ LQ Q++
Sbjct: 187 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246
Query: 387 VMWM 390
+ M
Sbjct: 247 FLSM 250
>gi|115455099|ref|NP_001051150.1| Os03g0728900 [Oryza sativa Japonica Group]
gi|28273388|gb|AAO38474.1| putative Helix-loop-helix DNA-binding domain containing protein
[Oryza sativa Japonica Group]
gi|50428703|gb|AAT77054.1| putative DNA binding protein [Oryza sativa Japonica Group]
gi|108710880|gb|ABF98675.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113549621|dbj|BAF13064.1| Os03g0728900 [Oryza sativa Japonica Group]
gi|125544737|gb|EAY90876.1| hypothetical protein OsI_12481 [Oryza sativa Indica Group]
gi|125587792|gb|EAZ28456.1| hypothetical protein OsJ_12437 [Oryza sativa Japonica Group]
Length = 327
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEA 374
G G K +R +A H+L+ER RR +I+E+M+ LQ+L+P C+K T KA MLDE
Sbjct: 137 GDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEI 196
Query: 375 IEYLKSLQLQLQVMWM 390
I Y++SLQ Q++ + M
Sbjct: 197 INYVQSLQRQVEFLSM 212
>gi|21593792|gb|AAM65759.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 310
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 18/138 (13%)
Query: 276 GSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFE---------SGAGNKTAQRSG 326
G G F R G S KR S D VD+ C S F S T+ R
Sbjct: 89 GKGPGFLRPEG---GHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPR 145
Query: 327 -SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL 385
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+M+DE ++Y+K L+LQ+
Sbjct: 146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQV 205
Query: 386 QVMWM----GSG-MAPLM 398
+V+ M G G +APL+
Sbjct: 206 KVLSMSRLGGVGAVAPLV 223
>gi|356564005|ref|XP_003550247.1| PREDICTED: transcription factor BEE 1-like [Glycine max]
Length = 268
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + HNL+ER RR +INEK+R LQ ++P C KT A MLDE I Y++SLQ Q++
Sbjct: 153 ARRGQATDSHNLAERVRRGKINEKLRYLQNIVPGCYKTMSMAVMLDEIINYVQSLQHQVE 212
Query: 387 VM 388
+
Sbjct: 213 FL 214
>gi|297816208|ref|XP_002875987.1| hypothetical protein ARALYDRAFT_348075 [Arabidopsis lyrata subsp.
lyrata]
gi|297321825|gb|EFH52246.1| hypothetical protein ARALYDRAFT_348075 [Arabidopsis lyrata subsp.
lyrata]
Length = 311
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 9/98 (9%)
Query: 342 RRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP--LMF 399
++RRD IN+KMR LQ+L+P+ +K D S+LDEAI Y+K+LQLQ+Q+M MG+ +M
Sbjct: 142 KQRRD-INKKMRTLQDLLPNSHKDDNESVLDEAINYMKNLQLQVQMMTMGNTFVTPSMML 200
Query: 400 P------GMQHYMSRMGMGMGPPPLPSVTNPMHFSRVP 431
P G Q ++ +G G P + + + F P
Sbjct: 201 PFMGMQMGAQQFLPAHVLGAGLPGINDSADMLRFLNHP 238
>gi|159505446|gb|ABW97699.1| putative bHLH transcription factor [Citrus sinensis]
Length = 370
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++ LQ Q++
Sbjct: 185 ARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVE 244
Query: 387 VMWMGSGMAPLMF 399
+ M MF
Sbjct: 245 FLSMKLASVNPMF 257
>gi|125536776|gb|EAY83264.1| hypothetical protein OsI_38473 [Oryza sativa Indica Group]
Length = 198
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 9/81 (11%)
Query: 325 SGSCRRSRAAEVHN-LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL 383
S +C+ S +AE + RR RINE++R LQELIP+ K D ++ML+EAI+Y+K L L
Sbjct: 106 SKACKHSVSAESSQPYYAKNRRQRINERLRILQELIPNGTKVDISTMLEEAIQYVKFLHL 165
Query: 384 QLQV-----MWMGSGMAPLMF 399
Q+++ MWM APL F
Sbjct: 166 QIKLLSSDEMWM---YAPLAF 183
>gi|357444409|ref|XP_003592482.1| Transcription factor bHLH84 [Medicago truncatula]
gi|355481530|gb|AES62733.1| Transcription factor bHLH84 [Medicago truncatula]
Length = 157
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 47/62 (75%), Gaps = 5/62 (8%)
Query: 343 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV--MWMGSGMAPLMFP 400
RRR+RINE++R LQ L+P+ K D ++ML+EA++Y+K LQLQ+++ MWM AP+ +
Sbjct: 86 RRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSMWM---YAPIAYN 142
Query: 401 GM 402
GM
Sbjct: 143 GM 144
>gi|414589881|tpg|DAA40452.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 312
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 158 ARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVE 217
Query: 387 VMWM 390
+ M
Sbjct: 218 FLSM 221
>gi|414877782|tpg|DAA54913.1| TPA: hypothetical protein ZEAMMB73_144255 [Zea mays]
Length = 304
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 8/73 (10%)
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM-----W 389
E ++ R+RR+RINE+++ LQ L+P+ K D ++ML+EA+ Y+K LQLQ++++ W
Sbjct: 222 EPQSIYARKRRERINERLKVLQSLVPNGTKVDMSTMLEEAVHYVKFLQLQIRLLSSDDTW 281
Query: 390 MGSGMAPLMFPGM 402
M AP+ + GM
Sbjct: 282 M---YAPIAYNGM 291
>gi|357486401|ref|XP_003613488.1| BHLH transcription factor [Medicago truncatula]
gi|355514823|gb|AES96446.1| BHLH transcription factor [Medicago truncatula]
Length = 239
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LDE I Y++SL Q++
Sbjct: 114 ARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVE 173
Query: 387 VMWM 390
+ M
Sbjct: 174 FLSM 177
>gi|312281971|dbj|BAJ33851.1| unnamed protein product [Thellungiella halophila]
Length = 310
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 18/138 (13%)
Query: 276 GSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFE---------SGAGNKTAQRSG 326
G G F R G S KR S D VD+ C S + S T+ R
Sbjct: 89 GKGPGFLRPEG---GHGSGKRFSDDVVDNRCSSMKPVYHGQPMQQPAPSAPHQPTSIRPR 145
Query: 327 -SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL 385
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+M+DE ++Y+K L+LQ+
Sbjct: 146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQV 205
Query: 386 QVMWM----GSG-MAPLM 398
+V+ M G+G +APL+
Sbjct: 206 KVLSMSRLGGAGAVAPLV 223
>gi|222624408|gb|EEE58540.1| hypothetical protein OsJ_09836 [Oryza sativa Japonica Group]
Length = 324
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 8/69 (11%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSG 393
L R+RR+RINE+++ LQ LIP+ K D ++ML+EA+ Y+K LQLQ+++ MWM
Sbjct: 245 LYARKRRERINERLKILQNLIPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDMWM--- 301
Query: 394 MAPLMFPGM 402
AP+ + G+
Sbjct: 302 FAPIAYNGV 310
>gi|108706746|gb|ABF94541.1| Helix-loop-helix DNA-binding domain containing protein [Oryza
sativa Japonica Group]
Length = 324
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 8/69 (11%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSG 393
L R+RR+RINE+++ LQ LIP+ K D ++ML+EA+ Y+K LQLQ+++ MWM
Sbjct: 245 LYARKRRERINERLKILQNLIPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDMWM--- 301
Query: 394 MAPLMFPGM 402
AP+ + G+
Sbjct: 302 FAPIAYNGV 310
>gi|218192293|gb|EEC74720.1| hypothetical protein OsI_10445 [Oryza sativa Indica Group]
Length = 324
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 8/69 (11%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSG 393
L R+RR+RINE+++ LQ LIP+ K D ++ML+EA+ Y+K LQLQ+++ MWM
Sbjct: 245 LYARKRRERINERLKILQNLIPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDMWM--- 301
Query: 394 MAPLMFPGM 402
AP+ + G+
Sbjct: 302 FAPIAYNGV 310
>gi|219363691|ref|NP_001136513.1| uncharacterized protein LOC100216628 [Zea mays]
gi|194695994|gb|ACF82081.1| unknown [Zea mays]
Length = 314
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 160 ARRGQATDSHSLAERVRREKISQRMKFLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVE 219
Query: 387 VMWM 390
+ M
Sbjct: 220 FLSM 223
>gi|312281887|dbj|BAJ33809.1| unnamed protein product [Thellungiella halophila]
Length = 304
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A + H+L+ER RR++I++KM+ LQ+++P C K T KA MLDE I Y++SLQ Q++
Sbjct: 143 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCTKVTGKAGMLDEIINYVQSLQQQVE 202
Query: 387 VMWM 390
+ M
Sbjct: 203 FLSM 206
>gi|356527821|ref|XP_003532505.1| PREDICTED: transcription factor BEE 3-like [Glycine max]
Length = 252
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 17/133 (12%)
Query: 259 ERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAG 318
+R T+ EP+ +S+ S ++T K S+G KR R++++ + +E +
Sbjct: 82 KRKATDICEPSSANSTPAVSESGSKT-KNSSGRG--KRVKRNSIEDKKPNEVVHVRA--- 135
Query: 319 NKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEY 377
+R +A + H+L+ER RR +INEK+R LQ ++P C KT A MLDE I Y
Sbjct: 136 ----------KRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINY 185
Query: 378 LKSLQLQLQVMWM 390
++SLQ Q++ + M
Sbjct: 186 VQSLQHQVEFLSM 198
>gi|356498448|ref|XP_003518064.1| PREDICTED: transcription factor bHLH48-like [Glycine max]
Length = 354
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 315 SGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDE 373
SG G K RR +A + H+L+ER RR++IN +M+ LQEL+P CNK A +LD+
Sbjct: 177 SGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDK 236
Query: 374 AIEYLKSLQLQLQVMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSVTNPMHFSRVP 431
I +++SLQ +++++ M + + P++ + ++ G+ P P+ + +P
Sbjct: 237 IINHVQSLQNEVEILSMKLAAVNPVIDFNLDSLLATEGVTPMDCNFPPTVAPVMWPEIP 295
>gi|449441077|ref|XP_004138310.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]
Length = 321
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
Query: 319 NKTAQRSGSC--RRSRAAEV-HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
N + GSC RR+R A + HN ERRRRDRIN++M+ LQ+L+P+ +KTD+AS+LD+ I
Sbjct: 155 NMKGKTDGSCSNRRTRTAAINHNQYERRRRDRINQRMKDLQKLVPNGSKTDRASLLDDTI 214
Query: 376 EYLKSLQLQLQVM 388
+YLK LQ Q+Q M
Sbjct: 215 QYLKQLQAQVQFM 227
>gi|225455954|ref|XP_002276500.1| PREDICTED: transcription factor BEE 3 [Vitis vinifera]
gi|297734215|emb|CBI15462.3| unnamed protein product [Vitis vinifera]
Length = 265
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR +INE++R LQ+++P C KT A MLDE I Y++SLQ Q++
Sbjct: 149 ARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVE 208
Query: 387 VMWM 390
+ M
Sbjct: 209 FLSM 212
>gi|334182257|ref|NP_001184895.1| transcription factor bHLH7 [Arabidopsis thaliana]
gi|4587574|gb|AAD25805.1|AC006550_13 Contains PF|00010 helix-loop-helix DNA-binding domain. ESTs
gb|T45640 and gb|T22783 come from this gene [Arabidopsis
thaliana]
gi|332189398|gb|AEE27519.1| transcription factor bHLH7 [Arabidopsis thaliana]
Length = 297
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
Query: 291 DNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG-----SCRRSRAAEVHNLSERRRR 345
D + KR D +D+ C S A Q+S RR +A + H+++ER RR
Sbjct: 99 DETGKRFQDDVLDNRCSSMKPPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRR 158
Query: 346 DRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM----GSG-MAPLM 398
+RI E++R+LQEL+P NKTD+A+M+DE ++Y+K L+LQ++V+ M G+G +APL+
Sbjct: 159 ERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV 216
>gi|357124540|ref|XP_003563957.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 441
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 25/181 (13%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
R +A H+L+ER RR++I+E+M+ LQ+L+P C+K KA MLDE I Y++SLQ Q++
Sbjct: 265 ARSGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVIGKAVMLDEIINYVQSLQRQVE 324
Query: 387 VMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSV-----TNPMHFSRVP--------- 431
+ M S + P + ++ +S+ P S N HF P
Sbjct: 325 FLSMKLSTVNPALDFNIERILSKDFFQSQGTPASSAFGFLPENSHHFLHQPKHSQAALHG 384
Query: 432 LVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMG-----FHPMQANSQ 486
+V+ + + + N V +S PV +QM N NF ++ G F+ ++N +
Sbjct: 385 IVNPTDAFGRVTNAQVGSSSSFKEPV---HQMPN-NFDGEFHNVTGMPFSLFNDQESNVE 440
Query: 487 P 487
P
Sbjct: 441 P 441
>gi|356534621|ref|XP_003535851.1| PREDICTED: transcription factor bHLH48-like [Glycine max]
Length = 357
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
S+ + A SG G K RR +A + H+L+ER RR++IN +M+ LQEL+P CN
Sbjct: 170 SKSVAAATDESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCN 229
Query: 364 KTD-KASMLDEAIEYLKSLQLQLQVMWMG-SGMAPLMFPGMQHYMSRMGMGMGPPPLPSV 421
K A +LD+ I +++SLQ +++++ M + + P++ + ++ G+ P
Sbjct: 230 KISGTALVLDKIINHVQSLQNEVEILSMKLAAVNPVIDFNLDSLLATEGVTPMDCNFPPT 289
Query: 422 TNPMHFSRVP 431
P+ + +P
Sbjct: 290 VAPVMWPEIP 299
>gi|224118802|ref|XP_002317910.1| predicted protein [Populus trichocarpa]
gi|222858583|gb|EEE96130.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR +INE++R LQ+++P C KT A MLDE I Y++SLQ Q++
Sbjct: 158 ARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVE 217
Query: 387 VMWM 390
+ M
Sbjct: 218 FLSM 221
>gi|223702428|gb|ACN21645.1| putative basic helix-loop-helix protein BHLH8 [Lotus japonicus]
Length = 309
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M LQ+L+P C+K T KA +L+E I Y++SLQ Q++
Sbjct: 122 RRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEF 181
Query: 388 MWMG-SGMAPLMF 399
+ M + + P++F
Sbjct: 182 LSMKLASVNPMLF 194
>gi|168009958|ref|XP_001757672.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691366|gb|EDQ77729.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 83
Score = 66.2 bits (160), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA ML+E I Y++SLQ Q++
Sbjct: 9 RRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKITGKAVMLEEIINYVQSLQRQIEF 68
Query: 388 MWM 390
+ M
Sbjct: 69 LSM 71
>gi|225424017|ref|XP_002279412.1| PREDICTED: transcription factor bHLH75 [Vitis vinifera]
Length = 258
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
+R +A + H+L+ER RR++INEK+R LQ+L+P C KT A MLD I Y++SLQ Q++
Sbjct: 142 AKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQIE 201
Query: 387 VMWMGSGMAPLMF 399
+ M A +
Sbjct: 202 FLSMKLSAASTFY 214
>gi|302766193|ref|XP_002966517.1| hypothetical protein SELMODRAFT_72702 [Selaginella moellendorffii]
gi|302801203|ref|XP_002982358.1| hypothetical protein SELMODRAFT_72704 [Selaginella moellendorffii]
gi|300149950|gb|EFJ16603.1| hypothetical protein SELMODRAFT_72704 [Selaginella moellendorffii]
gi|300165937|gb|EFJ32544.1| hypothetical protein SELMODRAFT_72702 [Selaginella moellendorffii]
Length = 102
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 18 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 77
Query: 387 VMWM 390
+ M
Sbjct: 78 FLSM 81
>gi|297737801|emb|CBI27002.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
+R +A + H+L+ER RR++INEK+R LQ+L+P C KT A MLD I Y++SLQ Q++
Sbjct: 125 AKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQIE 184
Query: 387 VMWMGSGMAPLMF 399
+ M A +
Sbjct: 185 FLSMKLSAASTFY 197
>gi|168000495|ref|XP_001752951.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695650|gb|EDQ81992.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 119
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 28 RRGQATDSHSLAERVRREKISERMKFLQDLVPSCSKVTGKAVMLDEIINYVQSLQRQIEF 87
Query: 388 MWM 390
+ M
Sbjct: 88 LSM 90
>gi|147773703|emb|CAN76460.1| hypothetical protein VITISV_010828 [Vitis vinifera]
Length = 237
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
+R +A + H+L+ER RR++INEK+R LQ+L+P C KT A MLD I Y++SLQ Q++
Sbjct: 121 AKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQIE 180
Query: 387 VMWMGSGMAPLMF 399
+ M A +
Sbjct: 181 FLSMKLSAASTFY 193
>gi|193848525|gb|ACF22714.1| putative TA1 protein [Brachypodium distachyon]
Length = 428
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
R +A H+L+ER RR++I+E+M+ LQ+L+P C+K KA MLDE I Y++SLQ Q++
Sbjct: 265 ARSGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVIGKAVMLDEIINYVQSLQRQVE 324
Query: 387 VMWM 390
+ M
Sbjct: 325 FLSM 328
>gi|224067212|ref|XP_002302411.1| predicted protein [Populus trichocarpa]
gi|222844137|gb|EEE81684.1| predicted protein [Populus trichocarpa]
Length = 362
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 10/85 (11%)
Query: 325 SGSCRRSRAAEV--HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
+G R +R A +L R+RR+RINE+++ LQ L+P+ K D ++ML+EA+ Y+ LQ
Sbjct: 269 NGKTRATRGAATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVHYVNFLQ 328
Query: 383 LQLQV-----MWMGSGMAPLMFPGM 402
LQ+++ +WM APL + G+
Sbjct: 329 LQIKLLSSDDLWM---YAPLAYNGI 350
>gi|224129878|ref|XP_002320693.1| predicted protein [Populus trichocarpa]
gi|222861466|gb|EEE99008.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 325 SGSCRRSRAAEV--HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
SG R SR A +L R+RR+RINE+++ LQ ++P+ K D ++ML+EA+ Y+K LQ
Sbjct: 267 SGKTRASRGAATDPQSLYARKRRERINERLKILQHIVPNGTKVDISTMLEEAVHYVKFLQ 326
Query: 383 LQLQV 387
LQ++V
Sbjct: 327 LQIKV 331
>gi|449439405|ref|XP_004137476.1| PREDICTED: transcription factor BEE 3-like [Cucumis sativus]
gi|449531561|ref|XP_004172754.1| PREDICTED: transcription factor BEE 3-like [Cucumis sativus]
Length = 278
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR +INE++R LQ+++P C KT A MLDE I Y++SLQ Q++
Sbjct: 155 ARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVE 214
Query: 387 VMWM 390
+ M
Sbjct: 215 FLSM 218
>gi|326521466|dbj|BAK00309.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 440
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
R +A H+L+ER RR++I+E+M+ LQ+L+P C+K KA MLDE I Y++SLQ Q++
Sbjct: 267 ARSGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVIGKAVMLDEIINYVQSLQRQVE 326
Query: 387 VMWM 390
+ M
Sbjct: 327 FLSM 330
>gi|18396475|ref|NP_564293.1| transcription factor bHLH54 [Arabidopsis thaliana]
gi|75301354|sp|Q8LEG1.1|BH054_ARATH RecName: Full=Transcription factor bHLH54; AltName: Full=Basic
helix-loop-helix protein 54; Short=AtbHLH54; Short=bHLH
54; AltName: Full=Transcription factor EN 114; AltName:
Full=bHLH transcription factor bHLH054
gi|21553570|gb|AAM62663.1| unknown [Arabidopsis thaliana]
gi|225897974|dbj|BAH30319.1| hypothetical protein [Arabidopsis thaliana]
gi|332192750|gb|AEE30871.1| transcription factor bHLH54 [Arabidopsis thaliana]
Length = 258
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
+ + S+ N++ + + VD + S ++ E + ++ + + + A + +L R
Sbjct: 125 KKQRVSSESNTVDESNTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGT-ATDPQSLYAR 183
Query: 343 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPL 397
+RR++INE+++ LQ L+P+ K D ++ML+EA+ Y+K LQLQ+++ +WM APL
Sbjct: 184 KRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWM---YAPL 240
Query: 398 MFPGM 402
+ G+
Sbjct: 241 AYNGL 245
>gi|52077404|dbj|BAD46515.1| bHLH protein-like [Oryza sativa Japonica Group]
gi|125597317|gb|EAZ37097.1| hypothetical protein OsJ_21438 [Oryza sativa Japonica Group]
Length = 294
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 21/90 (23%)
Query: 320 KTAQRSGSCRRSR-------AAEVHNLSERRR--------------RDRINEKMRALQEL 358
++A SGS RR+R +E+H S+++R R+RI+E++RALQEL
Sbjct: 162 RSAAASGSQRRARPPPSPLQGSELHEYSKKQRANNKETQSSAAKSRRERISERLRALQEL 221
Query: 359 IPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+P K D +MLD AI Y+K +Q+QL+V+
Sbjct: 222 VPSGGKVDMVTMLDRAISYVKFMQMQLRVL 251
>gi|224120394|ref|XP_002331037.1| predicted protein [Populus trichocarpa]
gi|222872967|gb|EEF10098.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN++M+ LQEL+P CNK + A +LDE I +++SLQ Q++
Sbjct: 179 ARRGQATDSHSLAERARREKINQRMKLLQELVPGCNKISGTALVLDEIINHVQSLQCQVE 238
Query: 387 VMWM 390
+ M
Sbjct: 239 FLSM 242
>gi|224066981|ref|XP_002302310.1| hypothetical protein POPTRDRAFT_754747 [Populus trichocarpa]
gi|222844036|gb|EEE81583.1| hypothetical protein POPTRDRAFT_754747 [Populus trichocarpa]
Length = 309
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
R+ +A + H+L ER RR++I+E+M+ LQ L+P CNK T KA MLDE I Y++SLQ Q++
Sbjct: 134 ARKGQATDSHSLVERVRREKISERMKLLQNLVPGCNKVTGKAFMLDEIINYVQSLQRQVE 193
Query: 387 V 387
V
Sbjct: 194 V 194
>gi|125578091|gb|EAZ19313.1| hypothetical protein OsJ_34859 [Oryza sativa Japonica Group]
Length = 311
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 15/78 (19%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK---------------TDKASMLD 372
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLD
Sbjct: 147 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVAKFSQKINLNFTLVTGKAVMLD 206
Query: 373 EAIEYLKSLQLQLQVMWM 390
E I Y++SLQ Q++ + M
Sbjct: 207 EIINYVQSLQRQVEFLSM 224
>gi|30698967|ref|NP_177524.2| transcription factor BEE 3 [Arabidopsis thaliana]
gi|75299562|sp|Q8GWK7.1|BEE3_ARATH RecName: Full=Transcription factor BEE 3; AltName: Full=Basic
helix-loop-helix protein 50; Short=AtbHLH50; Short=bHLH
50; AltName: Full=Protein Brassinosteroid enhanced
expression 3; AltName: Full=Transcription factor EN 76;
AltName: Full=bHLH transcription factor bHLH050
gi|26452579|dbj|BAC43374.1| putative bHLH transcription factor bHLH050 [Arabidopsis thaliana]
gi|29824159|gb|AAP04040.1| putative helix-loop-helix DNA-binding protein [Arabidopsis
thaliana]
gi|332197392|gb|AEE35513.1| transcription factor BEE 3 [Arabidopsis thaliana]
Length = 261
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR +INE+++ LQ+++P C KT A+MLDE I Y++SLQ Q++
Sbjct: 149 ARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVE 208
Query: 387 VMWM 390
+ M
Sbjct: 209 FLSM 212
>gi|449439537|ref|XP_004137542.1| PREDICTED: transcription factor BEE 3-like [Cucumis sativus]
gi|449532109|ref|XP_004173026.1| PREDICTED: transcription factor BEE 3-like [Cucumis sativus]
Length = 265
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR +INE++R L++++P C KT A MLDE I Y++SLQ Q++
Sbjct: 150 ARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVE 209
Query: 387 VMWMGSGMA 395
+ M A
Sbjct: 210 FLSMKLAAA 218
>gi|356513103|ref|XP_003525253.1| PREDICTED: transcription factor BEE 3-like [Glycine max]
Length = 246
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 21/126 (16%)
Query: 295 KRKSRDAVD-SECQSEAAGFESGAGNKTAQRSGS-------------------CRRSRAA 334
KRK+ D + S S A FESG+ K + G +R +A
Sbjct: 76 KRKATDIWEPSSANSTPAVFESGSKTKNSCGRGKRVKRNMIEDKKPNEVVHVRAKRGQAT 135
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVMWMGSG 393
+ H+L+ER RR +INEK+R LQ ++P C KT A MLDE I Y++SLQ Q++ + M
Sbjct: 136 DSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLN 195
Query: 394 MAPLMF 399
A +
Sbjct: 196 AASTYY 201
>gi|334183900|ref|NP_001185394.1| transcription factor BEE 3 [Arabidopsis thaliana]
gi|332197393|gb|AEE35514.1| transcription factor BEE 3 [Arabidopsis thaliana]
Length = 260
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR +INE+++ LQ+++P C KT A+MLDE I Y++SLQ Q++
Sbjct: 149 ARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVE 208
Query: 387 VMWM 390
+ M
Sbjct: 209 FLSM 212
>gi|302795837|ref|XP_002979681.1| hypothetical protein SELMODRAFT_419388 [Selaginella moellendorffii]
gi|300152441|gb|EFJ19083.1| hypothetical protein SELMODRAFT_419388 [Selaginella moellendorffii]
Length = 335
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL--- 385
+R A + ++ R+RR+RINE++RALQ L+P+ K D +ML+EAI Y+K LQLQL
Sbjct: 240 KRGSATDPQSIYARQRRERINERLRALQGLVPNGAKVDIVTMLEEAINYVKFLQLQLLSS 299
Query: 386 QVMWMGSGMAPLMFPGM 402
WM AP + GM
Sbjct: 300 DEYWM---YAPTNYNGM 313
>gi|356529573|ref|XP_003533364.1| PREDICTED: transcription factor BEE 3-like [Glycine max]
Length = 273
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR +INEK+R LQ ++P C KT A MLDE I Y++SLQ Q++
Sbjct: 158 ARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVE 217
Query: 387 VMWMGSGMAPLMF 399
+ + A +
Sbjct: 218 FLSLKLTAASTFY 230
>gi|12324208|gb|AAG52074.1|AC012679_12 putative helix-loop-helix DNA-binding protein; 87971-89290
[Arabidopsis thaliana]
Length = 250
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR +INE+++ LQ+++P C KT A+MLDE I Y++SLQ Q++
Sbjct: 138 ARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVE 197
Query: 387 VMWM 390
+ M
Sbjct: 198 FLSM 201
>gi|295913621|gb|ADG58055.1| transcription factor [Lycoris longituba]
Length = 207
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQ 382
RR A + H+L+ER RR+RI+E+M+ L+ L+P CNK T KA MLDE I Y++SLQ
Sbjct: 153 RRGEATDSHSLAERVRRERISERMKYLEGLVPGCNKITGKAGMLDEIINYVQSLQ 207
>gi|413920361|gb|AFW60293.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 241
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 43/52 (82%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+L +RRR+RINEK+R LQ+LIP+ K D ++ML+EA++Y+K LQLQ++++
Sbjct: 178 QSLYAKRRRERINEKLRTLQQLIPNGTKVDMSTMLEEAVQYVKFLQLQIKLL 229
>gi|297845732|ref|XP_002890747.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297336589|gb|EFH67006.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 69/116 (59%), Gaps = 9/116 (7%)
Query: 292 NSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEK 351
N++ + + +D + S ++ E + ++ + + + A + +L R+RR++INE+
Sbjct: 134 NTVDESNTNWIDGQSLSNSSDDEKASVTSVKGKTRATKGT-ATDPQSLYARKRREKINER 192
Query: 352 MRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
++ LQ L+P+ K D ++ML+EA+ Y+K LQLQ+++ +WM APL + G+
Sbjct: 193 LKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWM---YAPLAYNGL 245
>gi|18379045|ref|NP_563672.1| transcription factor bHLH7 [Arabidopsis thaliana]
gi|75305862|sp|Q93Y00.1|BH007_ARATH RecName: Full=Transcription factor bHLH7; AltName: Full=Basic
helix-loop-helix protein 7; Short=AtbHLH7; Short=bHLH 7;
AltName: Full=Transcription factor EN 92; AltName:
Full=bHLH transcription factor bHLH007
gi|21735477|gb|AAL55714.2|AF251692_1 putative transcription factor BHLH7 [Arabidopsis thaliana]
gi|15450779|gb|AAK96661.1| Unknown protein [Arabidopsis thaliana]
gi|21387097|gb|AAM47952.1| unknown protein [Arabidopsis thaliana]
gi|332189397|gb|AEE27518.1| transcription factor bHLH7 [Arabidopsis thaliana]
Length = 302
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 77/123 (62%), Gaps = 15/123 (12%)
Query: 291 DNSLKRKSRDAVDSECQSEAAGFESGAGNKTA-----QRSG-----SCRRSRAAEVHNLS 340
D + KR D +D+ C S F ++ A Q+S RR +A + H+++
Sbjct: 99 DETGKRFQDDVLDNRCSSMKPIFHGQPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIA 158
Query: 341 ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM----GSG-MA 395
ER RR+RI E++R+LQEL+P NKTD+A+M+DE ++Y+K L+LQ++V+ M G+G +A
Sbjct: 159 ERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVA 218
Query: 396 PLM 398
PL+
Sbjct: 219 PLV 221
>gi|357120420|ref|XP_003561925.1| PREDICTED: uncharacterized protein LOC100831403 [Brachypodium
distachyon]
Length = 337
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 8/71 (11%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMG 391
+L R+RR++INE+++ LQ L+P+ K D ++ML+EA+ Y+K +QLQ+++ MWM
Sbjct: 257 QSLYARKRREKINERLKVLQNLVPNGTKVDISTMLEEAVHYIKFMQLQIKLLSSDDMWM- 315
Query: 392 SGMAPLMFPGM 402
AP+ + G
Sbjct: 316 --FAPIAYNGF 324
>gi|297839255|ref|XP_002887509.1| hypothetical protein ARALYDRAFT_476520 [Arabidopsis lyrata subsp.
lyrata]
gi|297333350|gb|EFH63768.1| hypothetical protein ARALYDRAFT_476520 [Arabidopsis lyrata subsp.
lyrata]
Length = 263
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+++ER RR +INE+++ LQ+++P C KT A+MLDE I Y++SLQ Q++
Sbjct: 151 ARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVE 210
Query: 387 VMWMGSGMAPLMF---------PGMQHYMSRMGMGMG 414
+ M A + MQ +R + MG
Sbjct: 211 FLSMKLTAASSYYDFNSETDAVESMQRAKAREAVEMG 247
>gi|255572100|ref|XP_002526990.1| DNA binding protein, putative [Ricinus communis]
gi|223533625|gb|EEF35362.1| DNA binding protein, putative [Ricinus communis]
Length = 189
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
+R +A + H+L+ER RR+RINEK+R LQ+L+P C KT A MLD I Y++SLQ Q++
Sbjct: 123 AKRGQATDSHSLAERVRRERINEKLRCLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQIE 182
Query: 387 V 387
V
Sbjct: 183 V 183
>gi|297844782|ref|XP_002890272.1| F15H18.11 [Arabidopsis lyrata subsp. lyrata]
gi|297336114|gb|EFH66531.1| F15H18.11 [Arabidopsis lyrata subsp. lyrata]
Length = 1143
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR +INE++R LQ+++P C K A+MLDE I Y++SLQ Q++
Sbjct: 1031 RRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEF 1090
Query: 388 MWM 390
+ M
Sbjct: 1091 LSM 1093
>gi|30685840|ref|NP_173276.2| transcription factor BEE 1 [Arabidopsis thaliana]
gi|75299631|sp|Q8GZ13.1|BEE1_ARATH RecName: Full=Transcription factor BEE 1; AltName: Full=Basic
helix-loop-helix protein 44; Short=AtbHLH44; Short=bHLH
44; AltName: Full=Protein Brassinosteroid enhanced
expression 1; AltName: Full=Transcription factor EN 77;
AltName: Full=bHLH transcription factor bHLH044
gi|26449635|dbj|BAC41942.1| putative bHLH transcription factor bHLH044 [Arabidopsis thaliana]
gi|28950817|gb|AAO63332.1| At1g18400 [Arabidopsis thaliana]
gi|34391437|gb|AAN18283.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|332191590|gb|AEE29711.1| transcription factor BEE 1 [Arabidopsis thaliana]
Length = 260
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR +INE++R LQ+++P C K A+MLDE I Y++SLQ Q++
Sbjct: 147 ARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVE 206
Query: 387 VMWM 390
+ M
Sbjct: 207 FLSM 210
>gi|242066232|ref|XP_002454405.1| hypothetical protein SORBIDRAFT_04g030230 [Sorghum bicolor]
gi|241934236|gb|EES07381.1| hypothetical protein SORBIDRAFT_04g030230 [Sorghum bicolor]
Length = 306
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 299 RDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQEL 358
R V +E Q+ + GAG K A ++ S + + +L+ + RR+RI+E++R LQEL
Sbjct: 181 RTYVSAEPQAVSPKKHCGAGRK-ASKAKSPSTTPTKDPQSLAAKNRRERISERLRTLQEL 239
Query: 359 IPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+P+ K D +ML++AI Y+K LQLQ++V+
Sbjct: 240 VPNGTKVDLVTMLEKAISYVKFLQLQVKVL 269
>gi|356520601|ref|XP_003528950.1| PREDICTED: transcription factor BEE 3-like [Glycine max]
Length = 272
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR +INEK+R LQ ++P C KT A MLDE I Y++SLQ Q++
Sbjct: 157 ARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVE 216
Query: 387 VMWMGSGMAPLMF 399
+ + A +
Sbjct: 217 FLSLKLTAASTFY 229
>gi|413938508|gb|AFW73059.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 295
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
GAG K A ++ + + +L+ + RR+RI+E++RALQEL+P+ K D +ML++AI
Sbjct: 185 GAGRK-ASKAKLASTAPTKDPQSLAAKNRRERISERLRALQELVPNGTKVDLVTMLEKAI 243
Query: 376 EYLKSLQLQLQVM 388
Y+K LQLQ++V+
Sbjct: 244 SYVKFLQLQVKVL 256
>gi|168024073|ref|XP_001764561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684139|gb|EDQ70543.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 62
Score = 64.7 bits (156), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C K T KA MLDE I Y++SLQ Q++
Sbjct: 4 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCRKVTGKAVMLDEIINYVQSLQRQVE 62
>gi|255582765|ref|XP_002532159.1| DNA binding protein, putative [Ricinus communis]
gi|223528169|gb|EEF30233.1| DNA binding protein, putative [Ricinus communis]
Length = 190
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR +INE++R LQ+++P C KT A MLDE I Y++SLQ Q++
Sbjct: 75 ARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVE 134
Query: 387 VMWMGSGMAPLMF 399
+ M A +
Sbjct: 135 FLSMKLTAASTFY 147
>gi|356511528|ref|XP_003524477.1| PREDICTED: transcription factor bHLH77-like [Glycine max]
Length = 324
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 9/103 (8%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+++M LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 140 ARRGQATDSHSLAERVRREKISKRMTTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVE 199
Query: 387 VMWMG-SGMAPLMFPG---MQHYMSR----MGMGMGPPPLPSV 421
+ M + + P+ F + M R + P PLP V
Sbjct: 200 FLSMKLASVNPMFFDSAMDLDTLMVRPDQKLSNIASPSPLPCV 242
>gi|363808192|ref|NP_001242485.1| uncharacterized protein LOC100809878 [Glycine max]
gi|255644791|gb|ACU22897.1| unknown [Glycine max]
Length = 224
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK KA +LD I Y++SLQ Q++
Sbjct: 101 ARRGQATDNHSLAERARREKISERMKILQDLVPGCNKVIGKAFVLDGIINYVQSLQRQVE 160
Query: 387 VMWM 390
+ M
Sbjct: 161 FLSM 164
>gi|388519201|gb|AFK47662.1| unknown [Lotus japonicus]
Length = 274
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR +INEK+R LQ ++P C KT A MLDE I Y++SLQ Q++
Sbjct: 159 ARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVE 218
Query: 387 VMWM 390
+ +
Sbjct: 219 FLSL 222
>gi|297788272|ref|XP_002862272.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297795123|ref|XP_002865446.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297307602|gb|EFH38530.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297311281|gb|EFH41705.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 54/81 (66%), Gaps = 5/81 (6%)
Query: 320 KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLK 379
K+ +R + A++ +L R+RR+RIN++++ LQ L+P+ K D ++ML++A+ Y+K
Sbjct: 127 KSLKRKAKSNKGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVK 186
Query: 380 SLQLQLQV-----MWMGSGMA 395
LQLQ+++ +WM + +A
Sbjct: 187 FLQLQIKLLSSDDLWMYALLA 207
>gi|58743491|gb|AAW81732.1| putative bZIPtranscription factor protein [Brassica oleracea]
Length = 263
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR +INE++R LQ+++P C K+ A+MLDE I Y++SLQ Q++
Sbjct: 150 ARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKSMGMATMLDEIINYVQSLQNQVE 209
Query: 387 VMWM 390
++ M
Sbjct: 210 LLSM 213
>gi|6714300|gb|AAF25996.1|AC013354_15 F15H18.11 [Arabidopsis thaliana]
Length = 1154
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR +INE++R LQ+++P C K A+MLDE I Y++SLQ Q++
Sbjct: 1042 RRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEF 1101
Query: 388 MWM 390
+ M
Sbjct: 1102 LSM 1104
>gi|168042679|ref|XP_001773815.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674930|gb|EDQ61432.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 418
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 42/52 (80%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
H L+ERRRR+++N++ AL+ELIP+ +K DKAS+L AIEY+K LQ QL+ +
Sbjct: 213 HVLAERRRREKLNDRFVALRELIPNVSKMDKASILGVAIEYVKELQSQLRAL 264
>gi|125555439|gb|EAZ01045.1| hypothetical protein OsI_23077 [Oryza sativa Indica Group]
Length = 294
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 21/90 (23%)
Query: 320 KTAQRSGSCRRSR-------AAEVHNLSERRR--------------RDRINEKMRALQEL 358
++A SGS +R+R +E+H S+++R R+RI+E++RALQEL
Sbjct: 162 RSAAASGSQKRARPPPSPLQGSELHEYSKKQRANNKETQSSAAKSRRERISERLRALQEL 221
Query: 359 IPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+P K D +MLD AI Y+K +Q+QL+V+
Sbjct: 222 VPSGGKVDMVTMLDRAISYVKFMQMQLRVL 251
>gi|223702430|gb|ACN21646.1| putative basic helix-loop-helix protein BHLH5 [Lotus japonicus]
gi|388495576|gb|AFK35854.1| unknown [Lotus japonicus]
Length = 268
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR +INEK++ LQ ++P C KT A MLDE I Y++SLQ Q++
Sbjct: 154 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE 213
Query: 387 VMWMGSGMAPLMF 399
+ M A +
Sbjct: 214 FLSMKLTAASTFY 226
>gi|357141712|ref|XP_003572320.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 327
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 7/80 (8%)
Query: 316 GAGNKTAQRSG----SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASM 370
GAG + Q+ G R +A H+++E+ RR++I+E+M+ LQ+L+P C+K T KA M
Sbjct: 136 GAGER--QKEGYVHVRARSEQATNSHSIAEKLRREKISERMKLLQDLVPGCSKVTGKAVM 193
Query: 371 LDEAIEYLKSLQLQLQVMWM 390
LDE I Y++SLQ Q++ + M
Sbjct: 194 LDEIINYVQSLQRQVEFLSM 213
>gi|168050670|ref|XP_001777781.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670882|gb|EDQ57443.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 67
Score = 64.3 bits (155), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++I+E+M+ LQ+L+P C K T KA MLDE I Y++ LQ Q++
Sbjct: 9 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCKKVTGKAVMLDEIINYVQFLQRQVE 67
>gi|224088258|ref|XP_002308393.1| predicted protein [Populus trichocarpa]
gi|222854369|gb|EEE91916.1| predicted protein [Populus trichocarpa]
Length = 184
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 41/52 (78%), Gaps = 5/52 (9%)
Query: 352 MRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM-----GSGMAPLM 398
M+ALQEL+P+ NKTDKASMLDE I+Y+K LQLQ++V+ M + +APL+
Sbjct: 1 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 52
>gi|225441702|ref|XP_002282897.1| PREDICTED: transcription factor bHLH60 [Vitis vinifera]
gi|297739713|emb|CBI29895.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M+ LQEL+P CNK + A +LDE I +++SLQ Q++
Sbjct: 199 ARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIISHVQSLQRQVE 258
Query: 387 VMWM 390
+ M
Sbjct: 259 FLSM 262
>gi|168021524|ref|XP_001763291.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685426|gb|EDQ71821.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 537
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR A + ++ R RR++INE+++ LQ L+P+ K D +MLDEAI Y++ LQLQ+ +
Sbjct: 444 ARRGSATDPQSVYARHRREKINERLKTLQHLVPNGAKVDIVTMLDEAIHYVQFLQLQVTL 503
Query: 388 M-----WM 390
+ WM
Sbjct: 504 LKSDEYWM 511
>gi|449458442|ref|XP_004146956.1| PREDICTED: transcription factor UNE12-like [Cucumis sativus]
gi|449503810|ref|XP_004162188.1| PREDICTED: transcription factor UNE12-like [Cucumis sativus]
Length = 316
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 156 ARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV 215
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 216 LSMSRLGGAGAVAPLV 231
>gi|224137946|ref|XP_002322691.1| predicted protein [Populus trichocarpa]
gi|222867321|gb|EEF04452.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++IN++M+ LQEL+P CNK A +LDE I +++ LQ Q+++
Sbjct: 185 RRGQATDSHSLAERARREKINQRMKLLQELVPGCNKISGTALVLDEIINHVQFLQRQVEI 244
Query: 388 MWM 390
+ M
Sbjct: 245 LSM 247
>gi|357440519|ref|XP_003590537.1| Transcription factor UNE12 [Medicago truncatula]
gi|355479585|gb|AES60788.1| Transcription factor UNE12 [Medicago truncatula]
Length = 285
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 125 ARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV 184
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 185 LSMSRLGGAGAVAPLV 200
>gi|356500459|ref|XP_003519049.1| PREDICTED: transcription factor bHLH130-like [Glycine max]
Length = 378
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E+MR LQEL+PH +K T+ A MLD A+EY+K LQ Q +
Sbjct: 296 AKRGCATHPRSIAERVRRTRISERMRKLQELVPHMDKQTNTADMLDLAVEYIKDLQKQFK 355
Query: 387 VM 388
+
Sbjct: 356 TL 357
>gi|357440517|ref|XP_003590536.1| Transcription factor UNE12 [Medicago truncatula]
gi|355479584|gb|AES60787.1| Transcription factor UNE12 [Medicago truncatula]
Length = 282
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 122 ARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV 181
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 182 LSMSRLGGAGAVAPLV 197
>gi|242084062|ref|XP_002442456.1| hypothetical protein SORBIDRAFT_08g020280 [Sorghum bicolor]
gi|241943149|gb|EES16294.1| hypothetical protein SORBIDRAFT_08g020280 [Sorghum bicolor]
Length = 219
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 7/94 (7%)
Query: 296 RKSRDAVDSECQSEAAGFESGAGNKTAQR-----SGSCRRSRA-AEVHNLSERRRRDRIN 349
R++ D + G ES + +K ++ +G +RS AE H+L+E+RRR +I
Sbjct: 120 RRAWVVDDDQMVPSGKGLESSSDHKLQEKRKTSSTGRGKRSHHHAEAHSLTEKRRRLKIK 179
Query: 350 EKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQ 382
EK++ LQ+L+P C N +++AS LD+ I Y+KSLQ
Sbjct: 180 EKLKTLQQLVPGCPNNSNQASTLDQTIRYIKSLQ 213
>gi|255559915|ref|XP_002520976.1| DNA binding protein, putative [Ricinus communis]
gi|223539813|gb|EEF41393.1| DNA binding protein, putative [Ricinus communis]
Length = 299
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 139 ARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV 198
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 199 LSMSRLGGAGAVAPLV 214
>gi|223702398|gb|ACN21630.1| putative basic helix-loop-helix protein BHLH3 [Lotus japonicus]
Length = 297
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 137 ARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV 196
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 197 LSMSRLGGAGAVAPLV 212
>gi|356572238|ref|XP_003554277.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 292
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 132 ARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV 191
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 192 LSMSRLGGAGAVAPLV 207
>gi|20127060|gb|AAM10949.1|AF488593_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 379
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M+ LQEL+P C+K A +LDE I +++SLQ Q++
Sbjct: 206 ARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQSLQRQVE 265
Query: 387 VMWM 390
++ M
Sbjct: 266 MLSM 269
>gi|255572178|ref|XP_002527029.1| hypothetical protein RCOM_1311480 [Ricinus communis]
gi|223533664|gb|EEF35401.1| hypothetical protein RCOM_1311480 [Ricinus communis]
Length = 243
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 54/69 (78%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
R+ +A++ N+ ERRRRDRI +KM++L+ELIPHC+K D+ASMLD+AI YLK+L+L ++++
Sbjct: 79 RKRISADMRNIYERRRRDRIRDKMKSLRELIPHCHKQDRASMLDDAINYLKALKLHVEML 138
Query: 389 WMGSGMAPL 397
G L
Sbjct: 139 ANMGGRGAL 147
>gi|30695836|ref|NP_850745.1| transcription factor bHLH60 [Arabidopsis thaliana]
gi|6729523|emb|CAB67608.1| putative protein [Arabidopsis thaliana]
gi|22655000|gb|AAM98091.1| AT3g57800/T10K17_10 [Arabidopsis thaliana]
gi|27764962|gb|AAO23602.1| AT3g57800/T10K17_10 [Arabidopsis thaliana]
gi|332646182|gb|AEE79703.1| transcription factor bHLH60 [Arabidopsis thaliana]
Length = 379
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M+ LQEL+P C+K A +LDE I +++SLQ Q++
Sbjct: 206 ARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQSLQRQVE 265
Query: 387 VMWM 390
++ M
Sbjct: 266 MLSM 269
>gi|225437207|ref|XP_002281626.1| PREDICTED: transcription factor UNE12 [Vitis vinifera]
gi|297735488|emb|CBI17928.3| unnamed protein product [Vitis vinifera]
Length = 289
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 129 ARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV 188
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 189 LSMSRLGGAGAVAPLV 204
>gi|294462391|gb|ADE76744.1| unknown [Picea sitchensis]
Length = 222
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A H+L+ER RR++I+E+M+ LQ+L+P CNK T KA +L+ I Y++SLQ Q+++
Sbjct: 115 RRGQATNSHSLAERVRREKISERMKVLQDLVPGCNKVTGKALVLENIINYVQSLQSQVEI 174
Query: 388 M 388
+
Sbjct: 175 L 175
>gi|102139852|gb|ABF70010.1| basic helix-loop-helix (bHLH) family protein [Musa acuminata]
Length = 302
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 13/117 (11%)
Query: 291 DNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINE 350
+N+ + R + ++ F++ KT RS R A + +L ++RR+RIN
Sbjct: 174 ENNARSSGRSCCSYSSEEDSQAFQADLNAKT--RSN---RWPATDPQSLYAKQRRERINA 228
Query: 351 KMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-----MWMGSGMAPLMFPGM 402
++R LQ L+P+ K D ++ML+EA+ Y+K LQLQ+++ +WM AP++ GM
Sbjct: 229 RLRTLQNLVPNGTKVDISTMLEEAVRYVKFLQLQIKLLSSDELWM---YAPVVHSGM 282
>gi|356504971|ref|XP_003521266.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 292
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V
Sbjct: 132 ARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKV 191
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 192 LSMSRLGGAGAVAPLV 207
>gi|255570649|ref|XP_002526279.1| conserved hypothetical protein [Ricinus communis]
gi|223534360|gb|EEF36068.1| conserved hypothetical protein [Ricinus communis]
Length = 271
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 40/47 (85%)
Query: 341 ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
E++RR+RI +K++AL ELIP+C+K D AS+L AI+Y++SLQLQ+ V
Sbjct: 121 EKKRRNRIRDKLKALGELIPNCHKQDTASILVHAIDYIRSLQLQIYV 167
>gi|224066311|ref|XP_002302077.1| predicted protein [Populus trichocarpa]
gi|222843803|gb|EEE81350.1| predicted protein [Populus trichocarpa]
Length = 300
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+MLDE ++Y+K L+LQ+++
Sbjct: 140 ARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKI 199
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 200 LSMSRLGGAGAVAPLV 215
>gi|26449595|dbj|BAC41923.1| putative bHLH transcription factor bHLH026 [Arabidopsis thaliana]
Length = 143
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 7/66 (10%)
Query: 348 INEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGMQHYMS 407
++ KMR LQ+L+P+C+KTDK S+LD+ IEY+K+LQLQLQ+M G+ P P
Sbjct: 1 MSNKMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQLQLQMM-STVGVNPYFLPA------ 53
Query: 408 RMGMGM 413
+G GM
Sbjct: 54 TLGFGM 59
>gi|297824189|ref|XP_002879977.1| hypothetical protein ARALYDRAFT_483321 [Arabidopsis lyrata subsp.
lyrata]
gi|297325816|gb|EFH56236.1| hypothetical protein ARALYDRAFT_483321 [Arabidopsis lyrata subsp.
lyrata]
Length = 326
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M+ LQEL+P C+K A +LDE I +++SLQ Q++
Sbjct: 186 ARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQSLQRQVE 245
Query: 387 VMWM 390
++ M
Sbjct: 246 MLSM 249
>gi|312281897|dbj|BAJ33814.1| unnamed protein product [Thellungiella halophila]
Length = 375
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M+ LQEL+P C+K A +LDE I +++SLQ Q++
Sbjct: 202 ARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQSLQRQVE 261
Query: 387 VMWM 390
++ M
Sbjct: 262 MLSM 265
>gi|168024189|ref|XP_001764619.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684197|gb|EDQ70601.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++I+ +M+ LQ L+P C++ T KA ML+E I Y+KSLQ Q++
Sbjct: 153 RRGQATDGHSLAERARREKISNRMKFLQALVPGCSEVTGKAVMLEEIINYVKSLQRQIEF 212
Query: 388 MWM 390
+ M
Sbjct: 213 LSM 215
>gi|125540854|gb|EAY87249.1| hypothetical protein OsI_08651 [Oryza sativa Indica Group]
Length = 299
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
GAG K A ++ S + + +L+ + RR+RI+E++R LQEL+P+ K D +ML++AI
Sbjct: 188 GAGRK-AGKAKSVPTTPTKDPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEKAI 246
Query: 376 EYLKSLQLQLQVM 388
Y+K LQLQ++V+
Sbjct: 247 SYVKFLQLQVKVL 259
>gi|10998404|gb|AAG25927.1|AF260918_1 anthocyanin 1 [Petunia x hybrida]
gi|10998406|gb|AAG25928.1|AF260919_1 anthocyanin 1 [Petunia x hybrida]
Length = 668
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 281 FNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLS 340
F T Q+ + S K + VDS S A+ F G + SG+ H L+
Sbjct: 432 FLHTKYQTAAEVSPKSRDATTVDS---STASRFRKGCSITQEEPSGN---------HVLA 479
Query: 341 ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
ERRRR+++NE+ L+ L+P K DKAS+L + IEY+K L+ ++Q
Sbjct: 480 ERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKVQ 525
>gi|356509769|ref|XP_003523618.1| PREDICTED: uncharacterized protein LOC100779202 [Glycine max]
Length = 332
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 8/78 (10%)
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV-- 387
+ A + +L R+RR+RI++++R LQ L+P+ K D ++ML+EA++Y+K LQLQ ++
Sbjct: 244 KGSATDPQSLYARKRRERIDDRLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQNKLLS 303
Query: 388 ---MWMGSGMAPLMFPGM 402
+WM AP+ + G+
Sbjct: 304 SDDLWM---YAPIAYNGL 318
>gi|312282747|dbj|BAJ34239.1| unnamed protein product [Thellungiella halophila]
Length = 308
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 75/119 (63%), Gaps = 15/119 (12%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTA-----QRSG-----SCRRSRAAEVHNLSERRR 344
KR D VD+ C S F ++ A Q+S RR +A + H+++ER R
Sbjct: 109 KRFQDDVVDNRCSSMKPVFHGQPMSQPAPPMPHQQSSIRPRVRARRGQATDPHSIAERLR 168
Query: 345 RDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM----GSG-MAPLM 398
R+RI E++RALQEL+P +KTD+A+M+DE ++Y+K L+LQ++V+ M G+G +APL+
Sbjct: 169 RERIAERIRALQELVPTVSKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV 227
>gi|194695980|gb|ACF82074.1| unknown [Zea mays]
gi|413939375|gb|AFW73926.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 216
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 38/43 (88%)
Query: 352 MRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
M+ALQ LIP+ +KTDKASMLD+AIEYLK LQLQ+Q++ M +G+
Sbjct: 1 MKALQTLIPNSSKTDKASMLDDAIEYLKHLQLQVQMLSMRNGL 43
>gi|41052641|dbj|BAD07489.1| bHLH protein-like [Oryza sativa Japonica Group]
gi|41052857|dbj|BAD07771.1| bHLH protein-like [Oryza sativa Japonica Group]
Length = 298
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
+ GAG K A ++ S + + +L+ + RR+RI+E++R LQEL+P+ K D +ML++
Sbjct: 186 QCGAGRK-AGKAKSAPTTPTKDPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEK 244
Query: 374 AIEYLKSLQLQLQVM 388
AI Y+K LQLQ++V+
Sbjct: 245 AISYVKFLQLQVKVL 259
>gi|168020611|ref|XP_001762836.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685945|gb|EDQ72337.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 72
Score = 62.8 bits (151), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 44/56 (78%)
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+ E +++ R RR +I+E++R L++LIP NK D A+MLDEAIEY+K LQLQ+Q++
Sbjct: 15 SVEPQSVAARHRRKKISERIRVLEKLIPGGNKMDTATMLDEAIEYVKFLQLQVQIL 70
>gi|125583427|gb|EAZ24358.1| hypothetical protein OsJ_08110 [Oryza sativa Japonica Group]
Length = 282
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
+ GAG K A ++ S + + +L+ + RR+RI+E++R LQEL+P+ K D +ML++
Sbjct: 170 QCGAGRK-AGKAKSAPTTPTKDPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEK 228
Query: 374 AIEYLKSLQLQLQVM 388
AI Y+K LQLQ++V+
Sbjct: 229 AISYVKFLQLQVKVL 243
>gi|6166283|gb|AAF04760.1|AF103808_1 helix-loop-helix protein 1A [Pinus taeda]
Length = 551
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK--TDKASMLDEAIEYLKSLQLQL 385
+R A +++ER RR RI+E+MR LQEL+P+ +K + A MLDEA+EY+KSLQ Q+
Sbjct: 470 AKRGCATHPRSIAERVRRTRISERMRKLQELVPNSDKQTVNIADMLDEAVEYVKSLQKQV 529
Query: 386 Q 386
Q
Sbjct: 530 Q 530
>gi|115448229|ref|NP_001047894.1| Os02g0710300 [Oryza sativa Japonica Group]
gi|113537425|dbj|BAF09808.1| Os02g0710300 [Oryza sativa Japonica Group]
gi|215766533|dbj|BAG98841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 300
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
+ GAG K A ++ S + + +L+ + RR+RI+E++R LQEL+P+ K D +ML++
Sbjct: 188 QCGAGRK-AGKAKSAPTTPTKDPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEK 246
Query: 374 AIEYLKSLQLQLQVM 388
AI Y+K LQLQ++V+
Sbjct: 247 AISYVKFLQLQVKVL 261
>gi|30688981|ref|NP_850368.1| transcription factor bHLH48 [Arabidopsis thaliana]
gi|75304461|sp|Q8VZ02.1|BH048_ARATH RecName: Full=Transcription factor bHLH48; AltName: Full=Basic
helix-loop-helix protein 48; Short=AtbHLH48; Short=bHLH
48; AltName: Full=Transcription factor EN 97; AltName:
Full=bHLH transcription factor bHLH048
gi|17529250|gb|AAL38852.1| unknown protein [Arabidopsis thaliana]
gi|20465971|gb|AAM20171.1| unknown protein [Arabidopsis thaliana]
gi|51971465|dbj|BAD44397.1| putative bHLH transcription factor (bHLH048) [Arabidopsis thaliana]
gi|330255008|gb|AEC10102.1| transcription factor bHLH48 [Arabidopsis thaliana]
Length = 327
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M+ LQEL+P C+K A +LDE I ++++LQ Q++
Sbjct: 187 ARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVE 246
Query: 387 VMWM 390
++ M
Sbjct: 247 MLSM 250
>gi|116830915|gb|ABK28414.1| unknown [Arabidopsis thaliana]
Length = 224
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
+R +A + H+L+ER RR++INE+++ LQ+L+P C K A MLD I+Y++SLQ Q++
Sbjct: 106 AKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIE 165
Query: 387 VMWM 390
+ M
Sbjct: 166 FLSM 169
>gi|295913282|gb|ADG57898.1| transcription factor [Lycoris longituba]
Length = 206
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 15/114 (13%)
Query: 314 ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK---TDKASM 370
E+ G K RR +A + H+L+ER RR++IN +M+ LQEL+P C+K + A +
Sbjct: 20 ENNGGEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCSKGQISGTALV 79
Query: 371 LDEAIEYLKSLQLQLQVMWMG-SGMAPLM-FPGMQHYMS----------RMGMG 412
LD+ I +++SLQ Q++ + M + + P + F G+ + +S R+GMG
Sbjct: 80 LDKIINHVQSLQRQVEFLSMRLAAVTPRIDFSGLDNILSSECGRLTSSNRIGMG 133
>gi|147802826|emb|CAN64154.1| hypothetical protein VITISV_000192 [Vitis vinifera]
Length = 270
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR A + H+L+ER RR++I+E+M+ LQ L+P C+K K +LDE I Y+KSLQ Q++
Sbjct: 111 RRGEATDSHSLAERARREKISERMKLLQSLVPGCDKIIGKTLVLDEIINYVKSLQNQVEF 170
Query: 388 M 388
+
Sbjct: 171 L 171
>gi|18395643|ref|NP_564229.1| transcription factor bHLH75 [Arabidopsis thaliana]
gi|218563498|sp|A4D998.1|BH075_ARATH RecName: Full=Transcription factor bHLH75; AltName: Full=Basic
helix-loop-helix protein 75; Short=AtbHLH75; Short=bHLH
75; AltName: Full=Transcription factor EN 78; AltName:
Full=bHLH transcription factor bHLH075
gi|21618141|gb|AAM67191.1| helix-loop-helix protein homolog, putative [Arabidopsis thaliana]
gi|51969656|dbj|BAD43520.1| putative bHLH transcription factor (bHLH075) [Arabidopsis thaliana]
gi|91805851|gb|ABE65654.1| basic helix-loop-helix family protein [Arabidopsis thaliana]
gi|332192486|gb|AEE30607.1| transcription factor bHLH75 [Arabidopsis thaliana]
Length = 223
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
+R +A + H+L+ER RR++INE+++ LQ+L+P C K A MLD I+Y++SLQ Q++
Sbjct: 106 AKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIE 165
Query: 387 VMWM 390
+ M
Sbjct: 166 FLSM 169
>gi|390979908|gb|AFM30926.1| basic helix-loop-helix, partial [Vitis vinifera]
Length = 270
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR A + H+L+ER RR++I+E+M+ LQ L+P C+K K +LDE I Y+KSLQ Q++
Sbjct: 111 RRGEATDSHSLAERARREKISERMKLLQSLVPGCDKLIGKTLVLDEIINYVKSLQNQVEF 170
Query: 388 M 388
+
Sbjct: 171 L 171
>gi|225425220|ref|XP_002267465.1| PREDICTED: transcription factor bHLH76-like [Vitis vinifera]
Length = 270
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR A + H+L+ER RR++I+E+M+ LQ L+P C+K K +LDE I Y+KSLQ Q++
Sbjct: 111 RRGEATDSHSLAERARREKISERMKFLQSLVPGCDKIIGKTLVLDEIINYVKSLQNQVEF 170
Query: 388 M 388
+
Sbjct: 171 L 171
>gi|302757065|ref|XP_002961956.1| hypothetical protein SELMODRAFT_403406 [Selaginella moellendorffii]
gi|300170615|gb|EFJ37216.1| hypothetical protein SELMODRAFT_403406 [Selaginella moellendorffii]
Length = 572
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
R E +++ R+RR +I+E++R L++L+P NK D ASMLDEAI ++K LQ+Q+Q++
Sbjct: 381 RFKETVEPQSIAARQRRKKISERVRELEKLVPGGNKLDTASMLDEAIRFVKFLQIQVQLL 440
Query: 389 -WMGSG 393
+G+G
Sbjct: 441 EAVGNG 446
>gi|357130817|ref|XP_003567042.1| PREDICTED: uncharacterized protein LOC100822019 [Brachypodium
distachyon]
Length = 397
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSG 393
++ R RR+R+++++R LQ+L+P +K D ASMLDEA YLK L+ Q+Q + G+G
Sbjct: 289 QTVAARLRRERVSDRLRVLQKLVPGGSKMDTASMLDEAASYLKFLRSQVQALETGNG 345
>gi|223702400|gb|ACN21631.1| putative basic helix-loop-helix protein BHLH4 [Lotus japonicus]
Length = 275
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 58/75 (77%), Gaps = 5/75 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A MLDE ++Y+K L+LQ++V
Sbjct: 125 ARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAVMLDEIVDYVKFLRLQVKV 184
Query: 388 MWM----GSG-MAPL 397
+ M G+G +APL
Sbjct: 185 LSMSRLGGAGAVAPL 199
>gi|168019991|ref|XP_001762527.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686260|gb|EDQ72650.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 594
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+++ R RR+RI++++R LQ L+P K D ASMLDEAI Y+K L+LQLQ +
Sbjct: 444 SVAARHRRERISDRIRVLQRLVPGGTKMDTASMLDEAIHYVKFLKLQLQTL 494
>gi|79375674|ref|NP_176991.2| transcription factor bHLH109 [Arabidopsis thaliana]
gi|75287899|sp|Q5XVH0.1|BH109_ARATH RecName: Full=Transcription factor bHLH109; AltName: Full=Basic
helix-loop-helix protein 109; Short=AtbHLH109;
Short=bHLH 109; AltName: Full=bHLH transcription factor
bHLH109
gi|52354203|gb|AAU44422.1| hypothetical protein AT1G68240 [Arabidopsis thaliana]
gi|60547661|gb|AAX23794.1| hypothetical protein At1g68240 [Arabidopsis thaliana]
gi|332196649|gb|AEE34770.1| transcription factor bHLH109 [Arabidopsis thaliana]
Length = 185
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIP-HCNKTDKASMLDEAIEYLKSLQLQLQV 387
+R R+ E + E++RR I +K+ LQ L+P HC K D AS L+ IEY+KSL+ Q+ V
Sbjct: 64 KRQRSMEYRMMMEKKRRKEIKDKVDILQGLMPNHCTKPDLASKLENIIEYIKSLKYQVDV 123
Query: 388 MWMGSGMAPLMFP 400
M M P+ P
Sbjct: 124 MSMAYTTTPVYTP 136
>gi|302775426|ref|XP_002971130.1| hypothetical protein SELMODRAFT_411945 [Selaginella moellendorffii]
gi|300161112|gb|EFJ27728.1| hypothetical protein SELMODRAFT_411945 [Selaginella moellendorffii]
Length = 572
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
R E +++ R+RR +I+E++R L++L+P NK D ASMLDEAI ++K LQ+Q+Q++
Sbjct: 381 RFKETVEPQSIAARQRRKKISERVRELEKLVPGGNKLDTASMLDEAIRFVKFLQIQVQLL 440
Query: 389 -WMGSG 393
+G+G
Sbjct: 441 EAVGNG 446
>gi|297848526|ref|XP_002892144.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297337986|gb|EFH68403.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 306
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
RR +A + H+++ER RR+RI E++RALQEL+P NKTD+A+M+DE ++Y+K L+LQ++V
Sbjct: 150 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 209
Query: 388 MWM----GSG-MAPLM 398
+ M G+G +APL+
Sbjct: 210 LSMSRLGGAGAVAPLV 225
>gi|168040637|ref|XP_001772800.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675877|gb|EDQ62367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 461
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVM 388
R A +++ER RR +I+E+M+ LQEL+P+ ++ T+ A MLD+A+EY+K LQLQ+Q +
Sbjct: 383 RGHATHPRSIAERVRRGKISERMKKLQELVPNSDRQTNTADMLDDAVEYVKQLQLQVQEL 442
>gi|302759943|ref|XP_002963394.1| hypothetical protein SELMODRAFT_405220 [Selaginella moellendorffii]
gi|300168662|gb|EFJ35265.1| hypothetical protein SELMODRAFT_405220 [Selaginella moellendorffii]
Length = 459
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM---GSGM 394
++ R RR+RI+ K+R LQ L+P K D ASMLDEAI Y+K L+ Q+Q M M SG
Sbjct: 295 TVAARHRRERISTKIRILQRLVPGGTKMDTASMLDEAIHYVKYLKSQVQAMEMLEQSSGD 354
Query: 395 APLM 398
PL+
Sbjct: 355 QPLL 358
>gi|357117653|ref|XP_003560578.1| PREDICTED: transcription factor bHLH48-like [Brachypodium
distachyon]
Length = 259
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRA 354
KRK+ A D +A G G K A RR +A + H+L+ER RR++IN +M
Sbjct: 53 KRKADHAAD-RASKDAGG---GEDEKPAYVHVRARRGQATDSHSLAERARREKINARMEL 108
Query: 355 LQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQVMWM 390
L+EL+P C+K A +LDE I +++SLQ Q++ + M
Sbjct: 109 LKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSM 145
>gi|302770807|ref|XP_002968822.1| hypothetical protein SELMODRAFT_409967 [Selaginella moellendorffii]
gi|300163327|gb|EFJ29938.1| hypothetical protein SELMODRAFT_409967 [Selaginella moellendorffii]
Length = 499
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM---- 388
A + +++ R+RR+RI+++++ LQELIP+ +K D +ML++AI Y+K LQLQ++V+
Sbjct: 415 ANDPQSIAARQRRERISDRLKILQELIPNGSKVDLVTMLEKAINYVKFLQLQVKVLMNDE 474
Query: 389 -WMGSGMAPLMFPGMQHYM 406
W G +P Q Y+
Sbjct: 475 YWPPKGDGEEDYPVSQKYL 493
>gi|255572174|ref|XP_002527027.1| hypothetical protein RCOM_1311460 [Ricinus communis]
gi|223533662|gb|EEF35399.1| hypothetical protein RCOM_1311460 [Ricinus communis]
Length = 260
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 320 KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLK 379
KT + + RR+R+A ERRRR+RI EK++AL ELIPHC+K D AS+L+ AI+YLK
Sbjct: 89 KTNKLGQNHRRTRSATY----ERRRRNRIREKLKALGELIPHCHKQDTASLLEAAIDYLK 144
Query: 380 SLQLQLQVMW-MGSG 393
+L+LQ+++M MG G
Sbjct: 145 ALKLQVEMMSNMGGG 159
>gi|168042242|ref|XP_001773598.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675137|gb|EDQ61636.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 538
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+R A + ++ R RR++INE+++ LQ L+P+ K D +MLDEAI Y+K LQ Q+++
Sbjct: 444 AKRGSATDPQSVYARHRREKINERLKNLQNLVPNGAKVDIVTMLDEAIHYVKFLQTQVEL 503
Query: 388 M-----WM 390
+ WM
Sbjct: 504 LKSDEFWM 511
>gi|302784756|ref|XP_002974150.1| hypothetical protein SELMODRAFT_414414 [Selaginella moellendorffii]
gi|300158482|gb|EFJ25105.1| hypothetical protein SELMODRAFT_414414 [Selaginella moellendorffii]
Length = 499
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM---- 388
A + +++ R+RR+RI+++++ LQELIP+ +K D +ML++AI Y+K LQLQ++V+
Sbjct: 415 ANDPQSIAARQRRERISDRLKILQELIPNGSKVDLVTMLEKAINYVKFLQLQVKVLMNDE 474
Query: 389 -WMGSGMAPLMFPGMQHYM 406
W G +P Q Y+
Sbjct: 475 YWPPKGDGEEDYPMSQKYL 493
>gi|51969310|dbj|BAD43347.1| putative bHLH transcription factor (bHLH048) [Arabidopsis thaliana]
gi|51970180|dbj|BAD43782.1| putative bHLH transcription factor (bHLH048) [Arabidopsis thaliana]
Length = 327
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASM-LDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M+ LQEL+P C+K + LDE I ++++LQ Q++
Sbjct: 187 ARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTGLVLDEIINHVQTLQRQVE 246
Query: 387 VMWM 390
++ M
Sbjct: 247 MLSM 250
>gi|79320892|ref|NP_001031251.1| transcription factor bHLH109 [Arabidopsis thaliana]
gi|52354201|gb|AAU44421.1| hypothetical protein AT1G68240 [Arabidopsis thaliana]
gi|332196650|gb|AEE34771.1| transcription factor bHLH109 [Arabidopsis thaliana]
Length = 174
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIP-HCNKTDKASMLDEAIEYLKSLQLQLQV 387
+R R+ E + E++RR I +K+ LQ L+P HC K D AS L+ IEY+KSL+ Q+ V
Sbjct: 64 KRQRSMEYRMMMEKKRRKEIKDKVDILQGLMPNHCTKPDLASKLENIIEYIKSLKYQVDV 123
Query: 388 MWMGSGMAPLMFP 400
M M P+ P
Sbjct: 124 MSMAYTTTPVYTP 136
>gi|296088166|emb|CBI35658.3| unnamed protein product [Vitis vinifera]
Length = 204
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR A + H+L+ER RR++I+E+M+ LQ L+P C+K K +LDE I Y+KSLQ Q++
Sbjct: 45 RRGEATDSHSLAERARREKISERMKFLQSLVPGCDKIIGKTLVLDEIINYVKSLQNQVEF 104
Query: 388 M 388
+
Sbjct: 105 L 105
>gi|302785816|ref|XP_002974679.1| hypothetical protein SELMODRAFT_415047 [Selaginella moellendorffii]
gi|300157574|gb|EFJ24199.1| hypothetical protein SELMODRAFT_415047 [Selaginella moellendorffii]
Length = 520
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM---GSGM 394
++ R RR+RI+ K+R LQ L+P K D ASMLDEAI Y+K L+ Q+Q M M SG
Sbjct: 296 TVAARHRRERISTKIRILQRLVPGGTKMDTASMLDEAIHYVKYLKSQVQAMEMLEQSSGD 355
Query: 395 APLM 398
PL+
Sbjct: 356 QPLL 359
>gi|6693022|gb|AAF24948.1|AC012375_11 T22C5.19 [Arabidopsis thaliana]
Length = 279
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
+ + S+ N++ + + VD + S ++ E + ++ + + + A + +L R
Sbjct: 125 KKQRVSSESNTVDESNTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGT-ATDPQSLYAR 183
Query: 343 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGM 394
+RR++INE+++ LQ L+P+ K D ++ML+EA+ Y+K LQLQ++V + G
Sbjct: 184 KRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKVCRLLKGF 235
>gi|73760264|dbj|BAE20057.1| bHLH transcription factor [Lilium hybrid division I]
Length = 686
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
A+ H +SERRRR+++NEK L+ L+P K DKAS+L + IEYLK LQ +++ +
Sbjct: 474 ASASHVISERRRREKLNEKFLVLKSLVPSITKVDKASILGDTIEYLKELQRRIEEL 529
>gi|242052339|ref|XP_002455315.1| hypothetical protein SORBIDRAFT_03g008290 [Sorghum bicolor]
gi|241927290|gb|EES00435.1| hypothetical protein SORBIDRAFT_03g008290 [Sorghum bicolor]
Length = 290
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRA 354
KR RD E Q+ AA + G G + ++ + ++ + +++ + RR++I EK++
Sbjct: 168 KRARRDG---EVQAAAAKKQCGGGARKSKAKAAPAPTK--DPQSVAAKVRREKIAEKLKV 222
Query: 355 LQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
LQ+L+P+ K D +ML++AI Y+K LQLQ++V+
Sbjct: 223 LQDLVPNGTKVDLVTMLEKAITYVKFLQLQVKVL 256
>gi|11761480|gb|AAG28811.2|AC079374_14 helix-loop-helix protein homolog, putative [Arabidopsis thaliana]
Length = 166
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
+R +A + H+L+ER RR++INE+++ LQ+L+P C K A MLD I+Y++SLQ Q++
Sbjct: 50 KRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEF 109
Query: 388 MWM 390
+ M
Sbjct: 110 LSM 112
>gi|355320016|emb|CBY88797.1| basic helix-loop-helix transcription factor [Humulus lupulus]
Length = 695
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 314 ESGAGNKTAQ--RSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
++GAG+ T + R G + + H ++ERRRR+++NE+ L+ L+P K DKAS+L
Sbjct: 452 KAGAGDTTTRSFRKGGTPQDELSANHVMAERRRREKLNERFIILRSLVPFVTKMDKASIL 511
Query: 372 DEAIEYLKSLQLQLQ 386
+ IEY+K L+ ++Q
Sbjct: 512 GDTIEYVKQLRKKVQ 526
>gi|168024075|ref|XP_001764562.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684140|gb|EDQ70544.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 118
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
RR +A H+L+ER RR++I+ +M+ LQ L+P C++ T KA ML+E I Y+KSLQ Q++
Sbjct: 22 RRGQATNSHSLAERARREKISNRMKFLQALVPGCSEVTGKAVMLEEIINYVKSLQRQIEF 81
Query: 388 MWM 390
+ M
Sbjct: 82 LSM 84
>gi|302759440|ref|XP_002963143.1| hypothetical protein SELMODRAFT_404767 [Selaginella moellendorffii]
gi|300170004|gb|EFJ36606.1| hypothetical protein SELMODRAFT_404767 [Selaginella moellendorffii]
Length = 302
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 42/60 (70%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+R A + ++ R RR+RINE+++ LQ L+P+ K D +ML+EAI Y+K LQLQ+ ++
Sbjct: 214 KRGSATDPQSVYARHRRERINERLKTLQHLVPNGAKVDIVTMLEEAIHYVKFLQLQVNML 273
>gi|255586626|ref|XP_002533944.1| DNA binding protein, putative [Ricinus communis]
gi|223526075|gb|EEF28430.1| DNA binding protein, putative [Ricinus communis]
Length = 267
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
+R +A + H+++ER RR++IN K+R LQ+L+P C+K+ A ML+E I Y+ SLQ Q++
Sbjct: 152 KRGQATDSHSIAERVRREKINNKLRCLQDLVPGCHKSMGMAVMLEEIINYVHSLQNQVEF 211
Query: 388 MWM 390
+ M
Sbjct: 212 LSM 214
>gi|356554137|ref|XP_003545405.1| PREDICTED: transcription factor BEE 3-like [Glycine max]
Length = 305
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 279 SSFNRTSKQSTGDNSLK-------RKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRS 331
SS N T K S N K R + + E E + +G T R
Sbjct: 112 SSVNSTPKVSESGNKFKHSSGRGKRVKNNVTEEEKAKEVVNVRARSGQATDSR------- 164
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQVM 388
NL+ER RR +INEK+R LQ ++P C KT A MLDE I Y++SLQ Q++ +
Sbjct: 165 ------NLAERVRRGKINEKLRYLQNIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFL 216
>gi|168038260|ref|XP_001771619.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677058|gb|EDQ63533.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 569
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+R A + ++ R RR++INE+++ LQ L+P+ + D +ML+EAI ++K L+ QL++
Sbjct: 472 AKRGSATDPQSVYARHRREKINERLKTLQRLVPNGEQVDIVTMLEEAIHFVKFLEFQLEL 531
Query: 388 M-----WMGSGMAPLMFPGM 402
+ WM + P ++ GM
Sbjct: 532 LRSDDRWMFAD--PFIYNGM 549
>gi|224063497|ref|XP_002301173.1| predicted protein [Populus trichocarpa]
gi|222842899|gb|EEE80446.1| predicted protein [Populus trichocarpa]
Length = 307
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 76/165 (46%), Gaps = 38/165 (23%)
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGS 392
AAEVHNLSE KTDKASMLDEAIEYLK LQLQ+Q++ M +
Sbjct: 143 AAEVHNLSE----------------------KTDKASMLDEAIEYLKQLQLQVQMLTMRN 180
Query: 393 GMA--PLMFPG----MQHYMSRMGMGMGPPPLPSVTNPMHFSRVPLVDQSMSMAQAQNRA 446
G++ P+ PG MQ +S M G L + T FS ++ S+ A N
Sbjct: 181 GLSLHPMCLPGALQPMQPPLSGMSFDEGNGLLTTDTLTGIFS----ANEESSVQTALNLP 236
Query: 447 VMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPM-QANSQPMNM 490
C S P+ + +N T + GF P+ N P N+
Sbjct: 237 SQCTVSN-QPIAIPS---GTNITSSETSF-GFEPLIHVNHAPFNL 276
>gi|140084395|gb|ABO84937.1| indehiscent 1 [Physcomitrella patens]
Length = 67
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 39/51 (76%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+++ R RR+RI++++R LQ L+P K D ASMLDEAI Y+K L+LQLQV
Sbjct: 7 QSVAARHRRERISDRIRVLQRLVPGGTKMDTASMLDEAIHYVKFLKLQLQV 57
>gi|148909440|gb|ABR17818.1| unknown [Picea sitchensis]
Length = 757
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H L+ERRRR+++NEK L+ L+P K DKAS+L +AIEYLK LQ +++
Sbjct: 528 HVLAERRRREKLNEKFIVLRSLVPFVTKMDKASILGDAIEYLKQLQRRVE 577
>gi|225458639|ref|XP_002282817.1| PREDICTED: transcription factor HEC1 [Vitis vinifera]
gi|302142304|emb|CBI19507.3| unnamed protein product [Vitis vinifera]
Length = 248
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+++ R RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q+Q +
Sbjct: 157 SVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSL 207
>gi|357150524|ref|XP_003575488.1| PREDICTED: transcription factor bHLH84-like [Brachypodium
distachyon]
Length = 178
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 52/73 (71%), Gaps = 6/73 (8%)
Query: 329 RRSRAA-EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
++SRAA + + ++RR RINE++R LQ+LIP+ K D ++ML+EA++Y+K L LQ+++
Sbjct: 97 KKSRAAKDSQSHYAKKRRQRINERLRILQKLIPNGTKVDISTMLEEAVQYVKFLHLQIKL 156
Query: 388 -----MWMGSGMA 395
MWM + +A
Sbjct: 157 LSSDEMWMYAPLA 169
>gi|222080621|gb|ACM41587.1| bHLH transcription factor MYC4 [Catharanthus roseus]
Length = 259
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 290 GDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCR----RSRAAEVHNLSERRRR 345
D++ + S V E +G +K A+ S CR R A +++ER RR
Sbjct: 143 ADSNAAKASLAVVKGEQGGGISGLLDAEMDKLAEDSVLCRVRAKRGCATHPRSIAERVRR 202
Query: 346 DRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVM 388
RI++++R LQEL+P+ +K T+ A ML+EA+EY+K LQ Q+Q +
Sbjct: 203 TRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKFLQKQIQEL 246
>gi|341941279|gb|AEL12217.1| putative cryptochrome-interacting basic helix-loop-helix 5 [Beta
vulgaris]
Length = 225
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 269 TVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSC 328
T S + + F TS+ R++ D+ C+S + + N+
Sbjct: 79 TAVSDNNKNSVHFQETSQDKKISRQRFRRNDMKEDNVCRSGSLARKDATVNEDGFVYVRA 138
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQV 387
RR A + H+L+ER RR +I+ KM+ LQ L+P C+KT K +LD I Y+ SLQ Q++
Sbjct: 139 RRGEAVDSHSLAERVRRQKISSKMKLLQSLVPGCDKTTGKVPILDTIINYIHSLQDQVKS 198
Query: 388 M 388
+
Sbjct: 199 L 199
>gi|332801235|gb|AEE99259.1| anthocyanin 1-like protein [Nicotiana sylvestris]
Length = 671
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 297 KSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQ 356
KSRD + S A+ F G + T+Q S H L+ERRRR+++NE+ L+
Sbjct: 444 KSRDVATVDSSSTASRFRKGC-SITSQEEPSGN-------HVLAERRRREKLNERFIILR 495
Query: 357 ELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
L+P K DKAS+L + IEY+K L+ ++Q
Sbjct: 496 SLVPFVTKMDKASILGDTIEYVKQLRKKVQ 525
>gi|332801231|gb|AEE99257.1| anthocyanin 1a [Nicotiana tabacum]
Length = 671
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 297 KSRDAVDSECQSEAAGFESGAGNKTAQR-SGSCRRSRAAEVHNLSERRRRDRINEKMRAL 355
KSRD + S A+ F G + + SG+ H L+ERRRR+++NE+ L
Sbjct: 444 KSRDVATVDSSSTASRFRKGCSITSQEEPSGN---------HVLAERRRREKLNERFIIL 494
Query: 356 QELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
+ L+P K DKAS+L + IEY+K L+ ++Q
Sbjct: 495 RSLVPFVTKMDKASILGDTIEYVKQLRKKVQ 525
>gi|224077304|ref|XP_002305203.1| predicted protein [Populus trichocarpa]
gi|222848167|gb|EEE85714.1| predicted protein [Populus trichocarpa]
Length = 334
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 45/56 (80%)
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
A ++ +++ + RR+RI+E+++ LQ+L+P+ +K D +ML++AI Y+K LQLQ++V+
Sbjct: 238 AKDLQSIAAKNRRERISERLKVLQDLVPNGSKVDLVTMLEKAISYVKFLQLQVKVL 293
>gi|302781847|ref|XP_002972697.1| hypothetical protein SELMODRAFT_413232 [Selaginella moellendorffii]
gi|300159298|gb|EFJ25918.1| hypothetical protein SELMODRAFT_413232 [Selaginella moellendorffii]
Length = 442
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 45/60 (75%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
R+ A + +++ R RR+RI+++++ LQEL+P+ K D +ML++AI Y+K LQLQ++V+
Sbjct: 361 RQGSANDPQSIAARHRRERISDRLKILQELVPNSTKVDLVTMLEKAINYVKFLQLQVKVL 420
>gi|356528881|ref|XP_003533026.1| PREDICTED: transcription factor bHLH87-like [Glycine max]
Length = 443
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+RINEK+R LQ+L+P +K D ASMLDEA YLK L+ Q++ +
Sbjct: 347 VAARHRRERINEKIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKAL 396
>gi|223702412|gb|ACN21637.1| putative basic helix-loop-helix protein BHLH13 [Lotus japonicus]
Length = 262
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 14/86 (16%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPL 397
+++ R RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q++++
Sbjct: 137 SVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKRQIRLLQST------ 190
Query: 398 MFPGMQHYMSRMGMGMGPPPLPSVTN 423
P QH+ PPP P+ N
Sbjct: 191 --PNSQHHQQH------PPPTPTSCN 208
>gi|242058469|ref|XP_002458380.1| hypothetical protein SORBIDRAFT_03g032520 [Sorghum bicolor]
gi|241930355|gb|EES03500.1| hypothetical protein SORBIDRAFT_03g032520 [Sorghum bicolor]
Length = 406
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+R++E++R LQ+L+P +K D ASMLDEA YLK L+ Q+Q +
Sbjct: 298 TVAARLRRERVSERLRVLQKLVPGGSKMDTASMLDEAASYLKFLKSQVQAL 348
>gi|413954820|gb|AFW87469.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 359
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M L+EL+P C+K + A +LDE I +++SLQ Q++
Sbjct: 182 ARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVE 241
Query: 387 VMWM 390
+ M
Sbjct: 242 YLSM 245
>gi|356537351|ref|XP_003537191.1| PREDICTED: transcription factor bHLH130-like [Glycine max]
Length = 384
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E+MR LQEL+P+ +K T+ A MLD A+EY+K LQ Q +
Sbjct: 302 AKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFK 361
Query: 387 VM 388
+
Sbjct: 362 TL 363
>gi|449461837|ref|XP_004148648.1| PREDICTED: transcription factor HEC2-like [Cucumis sativus]
gi|449524665|ref|XP_004169342.1| PREDICTED: transcription factor HEC2-like [Cucumis sativus]
Length = 223
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 284 TSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAE-VHNLSER 342
T TGD+ + + E + A + + + R R R ++ +++ R
Sbjct: 66 TPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAAR 125
Query: 343 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q++++
Sbjct: 126 LRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 171
>gi|413954819|gb|AFW87468.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 372
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M L+EL+P C+K + A +LDE I +++SLQ Q++
Sbjct: 195 ARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVE 254
Query: 387 VMWM 390
+ M
Sbjct: 255 YLSM 258
>gi|168056351|ref|XP_001780184.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668417|gb|EDQ55025.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 484
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 333 AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+ + +++ R RR+RI++++R LQ L+P K D ASMLDEAI Y+K L+ QLQ +
Sbjct: 370 SIDTQSVAARHRRERISDRIRVLQRLVPGGTKMDTASMLDEAIHYIKFLKQQLQTL 425
>gi|125537287|gb|EAY83775.1| hypothetical protein OsI_38991 [Oryza sativa Indica Group]
Length = 373
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 276 GSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAE 335
+ S +K T D+S +RK + A S AAG S AA
Sbjct: 163 AAASPTTTMNKDETSDDSGERKKKKA------SSAAG------------KASKHHHAAAG 204
Query: 336 VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA 395
HNL+E+ +I E+ R LQ L+P C+K+++AS LD+ I+Y+KSLQ QL+ M +
Sbjct: 205 AHNLTEKAEV-QITERFRTLQRLVPGCDKSNQASTLDQTIQYMKSLQHQLKAMSVVGSPP 263
Query: 396 PLMFPGMQH 404
L++P H
Sbjct: 264 ALLYPAAVH 272
>gi|125526531|gb|EAY74645.1| hypothetical protein OsI_02537 [Oryza sativa Indica Group]
Length = 420
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 314 ESGAGNKTAQR-------SGSCRRSRAA-----EVHNLSERRRRDRINEKMRALQELIPH 361
E+ AG + AQR G +RAA + H +SERRRR+++NE L+ L+P
Sbjct: 204 EAVAGGEAAQRLLKKVVGGGGAWMNRAAGSCSIKNHVMSERRRREKLNEMFLILKSLVPS 263
Query: 362 CNKTDKASMLDEAIEYLKSLQLQLQ 386
+K DKAS+L E I YLK L+ ++Q
Sbjct: 264 IDKVDKASILSETIAYLKELERRVQ 288
>gi|414880798|tpg|DAA57929.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 1
[Zea mays]
gi|414880799|tpg|DAA57930.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 2
[Zea mays]
Length = 422
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+R++E++R LQ+L+P +K D ASMLDEA YLK L+ Q+Q +
Sbjct: 297 TVAARLRRERVSERLRVLQKLVPGGSKMDTASMLDEAASYLKFLKSQVQAL 347
>gi|52075730|dbj|BAD44950.1| regulatory protein B-Peru-like [Oryza sativa Japonica Group]
gi|52077560|dbj|BAD45121.1| regulatory protein B-Peru-like [Oryza sativa Japonica Group]
Length = 370
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 314 ESGAGNKTAQR-------SGSCRRSRAA-----EVHNLSERRRRDRINEKMRALQELIPH 361
E+ AG + AQR G +RAA + H +SERRRR+++NE L+ L+P
Sbjct: 154 EAVAGGEAAQRLLKKVVGGGGAWMNRAAGSCSIKNHVMSERRRREKLNEMFLILKSLVPS 213
Query: 362 CNKTDKASMLDEAIEYLKSLQLQLQ 386
+K DKAS+L E I YLK L+ ++Q
Sbjct: 214 IDKVDKASILSETIAYLKELERRVQ 238
>gi|413943655|gb|AFW76304.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 370
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
+E + AAG G K A RR +A + H+L+ER RR++IN +M L+EL+P C+
Sbjct: 138 AEEKPAAAG---GEDEKPAYVHVRARRGQATDSHSLAERARREKINARMELLKELVPGCS 194
Query: 364 KTD-KASMLDEAIEYLKSLQLQLQVMWM 390
K A +LDE I +++SLQ Q++ + M
Sbjct: 195 KVSGTALVLDEIINHVQSLQRQVEYLSM 222
>gi|238908347|emb|CAZ40332.1| putative transcription factor [Raphanus sativus]
Length = 645
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H LSER+RR+++N++ L+ +IP +KTDK S+LD+ IEYL+ LQ ++Q
Sbjct: 447 HALSERKRREKLNDRFITLRSMIPSISKTDKVSILDDTIEYLQELQRRVQ 496
>gi|224094310|ref|XP_002310136.1| predicted protein [Populus trichocarpa]
gi|222853039|gb|EEE90586.1| predicted protein [Populus trichocarpa]
Length = 239
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 396
++ R RR+RI+E+MR LQ L+P K D ASMLDEAI Y+K L+ Q+Q + P
Sbjct: 170 VAARHRRERISERMRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEQAGANTP 227
>gi|356538931|ref|XP_003537954.1| PREDICTED: transcription factor bHLH122-like [Glycine max]
Length = 418
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR +I+E+MR LQ+L+P+ +K T+ A MLD A+EY+K LQ Q+Q
Sbjct: 342 AKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQNQVQ 401
Query: 387 VM 388
+
Sbjct: 402 TL 403
>gi|225438169|ref|XP_002262764.1| PREDICTED: transcription factor bHLH25-like [Vitis vinifera]
Length = 358
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 268 PTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS 327
PT T G + +++ D ++K S + SE E + +G++T + S +
Sbjct: 116 PTDTLKFHGHQDKKAKPKNEASSDRNMKFAS---LISEGSYENQNYSPKSGDRTKRVSST 172
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
R H ++ER+RR+++ ++ AL L+P KTDK S+L EA++YLK LQ ++++
Sbjct: 173 TRNPLNNHDHVVAERKRREKLTQRFIALSALVPGLRKTDKVSVLGEAVKYLKQLQERVKM 232
Query: 388 M 388
+
Sbjct: 233 L 233
>gi|162463519|ref|NP_001105706.1| colored plant1 [Zea mays]
gi|22195|emb|CAA40544.1| regulatory protein [Zea mays]
Length = 562
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G TAQ +G A+ H +SER+RR+++NE L+ L+P +K DKAS+L E I
Sbjct: 372 GGTTVTAQENG-------AKNHVMSERKRREKLNEMFLVLKSLVPSIHKVDKASILAETI 424
Query: 376 EYLKSLQLQLQ 386
YLK LQ ++Q
Sbjct: 425 AYLKELQRRVQ 435
>gi|223702410|gb|ACN21636.1| putative basic helix-loop-helix protein BHLH12 [Lotus japonicus]
Length = 247
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 39/51 (76%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+++ R RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q++++
Sbjct: 105 SVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 155
>gi|357509821|ref|XP_003625199.1| Transcription factor bHLH130 [Medicago truncatula]
gi|355500214|gb|AES81417.1| Transcription factor bHLH130 [Medicago truncatula]
Length = 319
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 327 SCRRSRAAEVH--NLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQL 383
S R R H +L+ER RR RI+E+MR LQE++P+ +K T + MLD A+EY+K LQ
Sbjct: 242 SIRAKRGFATHPRSLAERVRRTRISERMRKLQEIVPNIDKQTCTSEMLDLAVEYIKDLQK 301
Query: 384 QLQVM 388
QL+ M
Sbjct: 302 QLKTM 306
>gi|357159056|ref|XP_003578325.1| PREDICTED: transcription factor bHLH130-like [Brachypodium
distachyon]
Length = 409
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR +I+E++R LQEL+P+ K T+ + MLD A++Y+K LQ+Q++
Sbjct: 329 AKRGCATHPRSIAERVRRTKISERIRKLQELVPNMEKQTNTSDMLDLAVDYIKELQMQVK 388
Query: 387 VM 388
VM
Sbjct: 389 VM 390
>gi|10177170|dbj|BAB10359.1| unnamed protein product [Arabidopsis thaliana]
Length = 239
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 40/50 (80%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
L+ + RR+RI+E+++ LQEL+P+ K D +ML++AI Y+K LQ+Q++V+
Sbjct: 146 LAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVL 195
>gi|255644916|gb|ACU22958.1| unknown [Glycine max]
Length = 242
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLM 398
++ R RR+RI+E+++ LQ L+P K D ASMLDEAI Y+K L+ Q+Q + PL
Sbjct: 143 VAARHRRERISERIKILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPLN 202
Query: 399 FPGM 402
G
Sbjct: 203 VVGF 206
>gi|449526183|ref|XP_004170093.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH122-like
[Cucumis sativus]
Length = 437
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR +I+E+MR LQEL+P+ +K T+ + MLD A+EY+K LQ Q+Q
Sbjct: 361 AKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVEYIKGLQKQVQ 420
Query: 387 VM 388
+
Sbjct: 421 TL 422
>gi|452030238|gb|AGF92088.1| indehiscent-like protein [Phaseolus vulgaris]
Length = 282
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 39/51 (76%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+++ R RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q++++
Sbjct: 149 SVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 199
>gi|449442685|ref|XP_004139111.1| PREDICTED: transcription factor bHLH122-like [Cucumis sativus]
Length = 437
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR +I+E+MR LQEL+P+ +K T+ + MLD A+EY+K LQ Q+Q
Sbjct: 361 AKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVEYIKGLQKQVQ 420
Query: 387 VM 388
+
Sbjct: 421 TL 422
>gi|326503832|dbj|BAK02702.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 407
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR +I+E++R LQEL+P+ K T+ + MLD A++Y+K LQ+Q++
Sbjct: 326 AKRGCATHPRSIAERVRRTKISERIRKLQELVPNMEKQTNTSDMLDLAVDYIKELQMQVK 385
Query: 387 VM 388
VM
Sbjct: 386 VM 387
>gi|163311840|gb|ABY26933.1| putative anthocyanin transcriptional regulator [Ipomoea trifida]
Length = 676
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 315 SGAGNKTAQRSGSCRRSRAAE---VHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
+GA + T S C+ + E H L+ERRRR+++NE+ L+ L+P K DKAS+L
Sbjct: 457 AGAADATIPSSKLCKAAPQEEPNANHVLAERRRREKLNERFIILRSLVPFVTKMDKASIL 516
Query: 372 DEAIEYLKSLQLQLQVMWMGSGMA 395
+ IEY+K L+ ++Q + G A
Sbjct: 517 GDTIEYVKQLRRRIQELEAARGSA 540
>gi|357465537|ref|XP_003603053.1| Transcription factor HEC2 [Medicago truncatula]
gi|355492101|gb|AES73304.1| Transcription factor HEC2 [Medicago truncatula]
Length = 271
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+RI+EK+R LQ ++P K D ASMLDEAI Y+K L+ QL+ +
Sbjct: 184 IAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKSL 233
>gi|356528585|ref|XP_003532880.1| PREDICTED: uncharacterized protein LOC100777351 [Glycine max]
Length = 271
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 39/51 (76%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+++ R RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q++++
Sbjct: 141 SVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 191
>gi|326495514|dbj|BAJ85853.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 391
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E++R LQEL+P+ +K T+ A MLD A++Y+K LQ Q++
Sbjct: 309 AKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKELQEQVK 368
Query: 387 VM 388
V+
Sbjct: 369 VI 370
>gi|168030856|ref|XP_001767938.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680780|gb|EDQ67213.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+++ R RR+RI++++R LQ +P K D ASMLDEAI Y+K LQ QLQ +
Sbjct: 393 QSVAARHRRERISDRVRVLQHFVPGGTKMDTASMLDEAIHYVKFLQQQLQTL 444
>gi|449445206|ref|XP_004140364.1| PREDICTED: putative transcription factor bHLH086-like [Cucumis
sativus]
Length = 284
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 274 SGGSGSSFNRTSKQSTGD--NSLKRK--SRDAVDSECQSEAAGFESGAGNK----TAQRS 325
+G +GS + +ST D +S++ +++ V + +S G SG+ K A +
Sbjct: 121 NGDNGSVYEWLYSESTTDFSDSIQEAEGTQEIVPNHKRSHTTGESSGSVCKKQCTAAPKK 180
Query: 326 GSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQL 385
+ + A + +++ + RR+RI+E+++ LQEL+P+ +K D +ML++AI Y+K LQLQ+
Sbjct: 181 QKPKSATAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQV 240
Query: 386 QVM 388
+++
Sbjct: 241 KIL 243
>gi|297597059|ref|NP_001043392.2| Os01g0577300 [Oryza sativa Japonica Group]
gi|125570917|gb|EAZ12432.1| hypothetical protein OsJ_02326 [Oryza sativa Japonica Group]
gi|255673385|dbj|BAF05306.2| Os01g0577300 [Oryza sativa Japonica Group]
Length = 265
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G G + +GSC + + H +SERRRR+++NE L+ L+P +K DKAS+L E I
Sbjct: 67 GGGAWMNRAAGSC----SIKNHVMSERRRREKLNEMFLILKSLVPSIDKVDKASILSETI 122
Query: 376 EYLKSLQLQLQ 386
YLK L+ ++Q
Sbjct: 123 AYLKELERRVQ 133
>gi|356511167|ref|XP_003524301.1| PREDICTED: uncharacterized protein LOC100775296 [Glycine max]
Length = 266
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q++++
Sbjct: 137 VAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 186
>gi|302812823|ref|XP_002988098.1| hypothetical protein SELMODRAFT_426794 [Selaginella moellendorffii]
gi|300144204|gb|EFJ10890.1| hypothetical protein SELMODRAFT_426794 [Selaginella moellendorffii]
Length = 422
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 44/59 (74%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
R+ A + +++ R RR+RI+++++ LQEL+P+ K D +ML++AI Y+K LQLQ++V
Sbjct: 361 RQGSANDPQSIAARHRRERISDRLKILQELVPNSTKVDLVTMLEKAINYVKFLQLQVKV 419
>gi|225441696|ref|XP_002277274.1| PREDICTED: transcription factor bHLH130-like [Vitis vinifera]
Length = 405
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
+R A +++ER RR RI+E+MR LQEL+P+ +K T+ A MLD A+EY+K LQ Q
Sbjct: 324 KRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQYNT 383
Query: 388 M 388
+
Sbjct: 384 L 384
>gi|359487434|ref|XP_003633592.1| PREDICTED: transcription factor bHLH130-like [Vitis vinifera]
Length = 408
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E+MR LQEL P+ +K T+ A MLD A+EY+K LQ Q++
Sbjct: 335 AKRGCATHPRSIAERVRRTRISERMRKLQELFPNMDKQTNTADMLDLAVEYIKDLQKQVK 394
Query: 387 VM 388
+
Sbjct: 395 TL 396
>gi|357148389|ref|XP_003574744.1| PREDICTED: transcription factor bHLH130-like [Brachypodium
distachyon]
Length = 377
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E++R LQEL+P+ +K T+ A MLD A++Y+K LQ Q++
Sbjct: 302 AKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKELQEQVK 361
Query: 387 VM 388
V+
Sbjct: 362 VI 363
>gi|3127045|gb|AAC39455.1| bHLH transcription factor JAF13 [Petunia x hybrida]
Length = 628
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMAP 396
+SERRRR++INE+ L ++P K DK S+LDE IEYLK L+ ++Q + SG P
Sbjct: 441 ISERRRREKINERFMLLASMLPAGGKVDKISLLDETIEYLKELERRVQDLEAKSGRRP 498
>gi|296088946|emb|CBI38512.3| unnamed protein product [Vitis vinifera]
Length = 334
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 268 PTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS 327
PT T G + +++ D ++K S + SE E + +G++T + S +
Sbjct: 92 PTDTLKFHGHQDKKAKPKNEASSDRNMKFAS---LISEGSYENQNYSPKSGDRTKRVSST 148
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
R H ++ER+RR+++ ++ AL L+P KTDK S+L EA++YLK LQ ++++
Sbjct: 149 TRNPLNNHDHVVAERKRREKLTQRFIALSALVPGLRKTDKVSVLGEAVKYLKQLQERVKM 208
Query: 388 MWMGSG 393
+ + +
Sbjct: 209 LEVQTA 214
>gi|224079313|ref|XP_002305819.1| predicted protein [Populus trichocarpa]
gi|222848783|gb|EEE86330.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQV 387
+R +A + H+++ER RR++IN K+R LQ+++P C+K+ A ML+E I Y+ SLQ Q++
Sbjct: 161 KRGQATDSHSIAERIRREKINNKLRCLQDIVPGCHKSMGMAVMLEEIINYVHSLQNQVEF 220
Query: 388 MWMGSGMA 395
+ M A
Sbjct: 221 LSMELAAA 228
>gi|168012170|ref|XP_001758775.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689912|gb|EDQ76281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 95
Score = 59.3 bits (142), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
RR A +++ER RR RI+E+M+ LQ+L+P+ +K T+ A MLDEA+EY+K LQ Q++
Sbjct: 18 RRGYATHPRSIAERNRRSRISERMKKLQDLVPNMDKQTNTADMLDEAVEYVKHLQTQVK 76
>gi|147864191|emb|CAN78817.1| hypothetical protein VITISV_041734 [Vitis vinifera]
Length = 367
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 49/97 (50%), Gaps = 24/97 (24%)
Query: 293 SLKRKSRDAVDSECQSEAAGFESGAGNKTAQ-RSGSCRRSRAAEVHNLSERRRRDRINEK 351
SLK K+ D DS C + + KT RS S RRSRAA +HN SER
Sbjct: 150 SLKAKTTDE-DSACHGGSENQDEDRETKTQTGRSHSTRRSRAAAIHNQSER--------- 199
Query: 352 MRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
TDKASMLDE IEYLK LQ Q+Q+M
Sbjct: 200 -------------TDKASMLDEVIEYLKQLQAQVQMM 223
>gi|125527433|gb|EAY75547.1| hypothetical protein OsI_03453 [Oryza sativa Indica Group]
Length = 394
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+R+++++R LQ+L+P NK D ASMLDEA YLK L+ Q+Q +
Sbjct: 289 VAARLRRERVSDRLRVLQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKL 338
>gi|414587589|tpg|DAA38160.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 275
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 32/39 (82%)
Query: 344 RRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
RR +I EKM+ALQ LIP+ NK DKASML EAIEY K+LQ
Sbjct: 233 RRSKIKEKMKALQSLIPNSNKIDKASMLHEAIEYPKTLQ 271
>gi|163311848|gb|ABY26937.1| putative anthocyanin transcriptional regulator [Ipomoea
hochstetteri]
Length = 683
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 316 GAGNKTAQRSGSCRRSRAAE---VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLD 372
G+G+ T S C+ + E H L+ERRRR+++NE+ L+ L+P K DKAS+L
Sbjct: 462 GSGDATIPSSKLCKAAPQEEPNANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILG 521
Query: 373 EAIEYLKSLQLQLQVMWMGSG 393
+ IEY+K L+ ++Q + G
Sbjct: 522 DTIEYVKQLRRRIQELEAARG 542
>gi|125659430|dbj|BAF46859.1| bHLH transcription activator Ivory seed [Ipomoea purpurea]
Length = 664
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 277 SGSSFNRTSKQSTGDNSLKRKSRDAVDSECQS----EAAGFESGAGNKTAQRSGSCRRSR 332
+GS+F+R + ++ S R ++ + + A G G T S C+ +
Sbjct: 403 TGSAFSRWTTAASSTCSSHRSAQWVLKYTLLTVPFLHAKNSNGGDGAATILSSKLCKAAP 462
Query: 333 AAE---VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
E H L+ERRRR+++NE+ L+ L+P K DKAS+L + IEY+K L+ ++Q
Sbjct: 463 QEEPNVNHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRRIQ 519
>gi|115439485|ref|NP_001044022.1| Os01g0707500 [Oryza sativa Japonica Group]
gi|19571105|dbj|BAB86530.1| bHLH transcription factor-like [Oryza sativa Japonica Group]
gi|20804650|dbj|BAB92339.1| bHLH transcription factor-like [Oryza sativa Japonica Group]
gi|113533553|dbj|BAF05936.1| Os01g0707500 [Oryza sativa Japonica Group]
gi|125571756|gb|EAZ13271.1| hypothetical protein OsJ_03197 [Oryza sativa Japonica Group]
gi|215741088|dbj|BAG97583.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 393
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+R+++++R LQ+L+P NK D ASMLDEA YLK L+ Q+Q +
Sbjct: 288 VAARLRRERVSDRLRVLQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKL 337
>gi|414877869|tpg|DAA55000.1| TPA: putative clathrin heavy chain family protein [Zea mays]
Length = 898
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 42/54 (77%)
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
E ++ R+RR+RINE+++ LQ L+P+ K D ++ML+EA+ Y+K LQLQ++++
Sbjct: 222 EPQSIYARKRRERINERLKVLQSLVPNGTKVDMSTMLEEAVHYVKFLQLQIRLI 275
>gi|295913280|gb|ADG57897.1| transcription factor [Lycoris longituba]
Length = 176
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQV 387
RR +A + H+L+ER RR++IN +M+ LQEL+P C+K A +LDE I +++SLQ +++
Sbjct: 10 RRGQATDSHSLAERARREKINARMKLLQELVPGCSKISGTALVLDEIINHVQSLQREVEF 69
Query: 388 MWMG-SGMAPLM-FPGMQHYMS 407
+ M + + P + F G+ +S
Sbjct: 70 LSMRLAAVNPRIDFSGLDSILS 91
>gi|147789805|emb|CAN62935.1| hypothetical protein VITISV_008845 [Vitis vinifera]
Length = 394
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
+R A +++ER RR RI+E+MR LQEL+P+ +K T+ A MLD A+EY+K LQ Q
Sbjct: 313 KRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQYNT 372
Query: 388 M 388
+
Sbjct: 373 L 373
>gi|172034194|gb|ACB69502.1| ICE87 [Triticum aestivum]
Length = 443
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
G TA+ G+ ++ + ++ERRRR ++N+++ AL+ ++P +K D+AS+L +AIEY
Sbjct: 241 GGATAE--GNAKKKGMPAKNLMAERRRRKKLNDRLYALRSVVPRISKMDRASILGDAIEY 298
Query: 378 LKSLQLQLQVM 388
LK L+ ++ V+
Sbjct: 299 LKELKQKINVL 309
>gi|13346180|gb|AAK19612.1|AF336279_1 GHDEL61 [Gossypium hirsutum]
Length = 624
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H LSERRRR++INE++ L+ L+P +K DK S+LD+ IEYL+ L+ +++
Sbjct: 425 HVLSERRRREKINERLMILKSLVPTNSKADKVSILDDTIEYLQDLERRVE 474
>gi|158515839|gb|ABW69687.1| anthocyanin synthesis regulatory protein [Ipomoea purpurea]
Length = 664
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 277 SGSSFNRTSKQSTGDNSLKRKSRDAVDSECQS----EAAGFESGAGNKTAQRSGSCRRSR 332
+GS+F+R + ++ S R ++ + + A G G T S C+ +
Sbjct: 403 TGSAFSRWTTAASSTCSSHRSAQWVLKYTLLTVPFLHAKNSNGGDGAATILSSKLCKAAP 462
Query: 333 AAE---VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
E H L+ERRRR+++NE+ L+ L+P K DKAS+L + IEY+K L+ ++Q
Sbjct: 463 QEEPNVNHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRRIQ 519
>gi|15240346|ref|NP_198596.1| putative transcription factor bHLH086 [Arabidopsis thaliana]
gi|218563533|sp|Q9FJ00.2|BH086_ARATH RecName: Full=Putative transcription factor bHLH086; AltName:
Full=Basic helix-loop-helix protein 86; Short=AtbHLH86;
Short=bHLH 86; AltName: Full=Transcription factor EN
113; AltName: Full=bHLH transcription factor bHLH086
gi|332006851|gb|AED94234.1| putative transcription factor bHLH086 [Arabidopsis thaliana]
Length = 307
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 40/50 (80%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
L+ + RR+RI+E+++ LQEL+P+ K D +ML++AI Y+K LQ+Q++V+
Sbjct: 214 LAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVL 263
>gi|125564328|gb|EAZ09708.1| hypothetical protein OsI_31996 [Oryza sativa Indica Group]
Length = 236
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
R A +++ + RR+RI+E+MR LQ L+P C+K T KA +LDE I Y++SLQ Q++
Sbjct: 64 REEDTASLNSAHSKVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEF 123
Query: 388 MWMG-SGMAPLMF 399
+ M + ++P+++
Sbjct: 124 LSMRIASLSPVLY 136
>gi|218191124|gb|EEC73551.1| hypothetical protein OsI_07971 [Oryza sativa Indica Group]
Length = 217
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
+R A +++ER RR RI+EK+R LQEL+P+ +K T A MLD A+E++K LQ QLQ
Sbjct: 144 KRGCATHPRSIAERERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQA 203
Query: 388 M 388
+
Sbjct: 204 L 204
>gi|297606176|ref|NP_001058071.2| Os06g0613500 [Oryza sativa Japonica Group]
gi|255677227|dbj|BAF19985.2| Os06g0613500, partial [Oryza sativa Japonica Group]
Length = 178
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 56/83 (67%), Gaps = 3/83 (3%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M L+EL+P C+K A +LDE I +++SLQ Q++
Sbjct: 1 ARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVE 60
Query: 387 VMWMG-SGMAPLM-FPGMQHYMS 407
+ M + + P + F G+ ++++
Sbjct: 61 YLSMRLAAVNPRVDFGGLDNFLT 83
>gi|297739719|emb|CBI29901.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E+MR LQEL+P+ +K T+ A MLD A+EY+K LQ Q
Sbjct: 198 AKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQYN 257
Query: 387 VM 388
+
Sbjct: 258 TL 259
>gi|218198545|gb|EEC80972.1| hypothetical protein OsI_23697 [Oryza sativa Indica Group]
Length = 286
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M L+EL+P C+K A +LDE I +++SLQ Q++
Sbjct: 109 ARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVE 168
Query: 387 VMWM 390
+ M
Sbjct: 169 YLSM 172
>gi|297838323|ref|XP_002887043.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297332884|gb|EFH63302.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 296
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 40/50 (80%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
L+ + RR+RI+E+++ LQEL+P+ K D +ML++AI Y+K LQ+Q++V+
Sbjct: 206 LAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVL 255
>gi|168027850|ref|XP_001766442.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682351|gb|EDQ68770.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 879
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 45/61 (73%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
R+ A + +++ R RR+RI+E+++ LQ LIP+ +K D +ML++AI Y++ L+LQ+++
Sbjct: 756 ARQGSANDPQSIAARVRRERISERLKVLQALIPNGDKVDMVTMLEKAITYVQCLELQIKM 815
Query: 388 M 388
+
Sbjct: 816 L 816
>gi|297840129|ref|XP_002887946.1| hypothetical protein ARALYDRAFT_474990 [Arabidopsis lyrata subsp.
lyrata]
gi|297333787|gb|EFH64205.1| hypothetical protein ARALYDRAFT_474990 [Arabidopsis lyrata subsp.
lyrata]
Length = 596
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H LSE++RR+++NE+ L+ +IP +K DK S+LD+ IEYL+ LQ ++Q
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQELQKRVQ 455
>gi|356536570|ref|XP_003536810.1| PREDICTED: transcription factor UNE12-like [Glycine max]
Length = 283
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 58/72 (80%), Gaps = 5/72 (6%)
Query: 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWM- 390
+A + H+++ER RR+RI E++RALQEL+P NKTD+A+MLDE ++Y+K L+LQ++V+ M
Sbjct: 128 QATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMS 187
Query: 391 ---GSG-MAPLM 398
G+G +APL+
Sbjct: 188 RLGGAGAVAPLV 199
>gi|255544250|ref|XP_002513187.1| DNA binding protein, putative [Ricinus communis]
gi|223547685|gb|EEF49178.1| DNA binding protein, putative [Ricinus communis]
Length = 432
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E+MR LQ+L P+ +K T+ A MLD A+EY+K LQ Q++
Sbjct: 352 AKRGFATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTADMLDLAVEYIKDLQKQVK 411
Query: 387 VM 388
+
Sbjct: 412 TL 413
>gi|302398605|gb|ADL36597.1| BHLH domain class transcription factor [Malus x domestica]
Length = 709
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 313 FESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLD 372
F+ G G+ T R G+ + +A H L+ERRRR+++NE+ L+ L+P K DKAS+L
Sbjct: 459 FQEGEGS-TRLRKGTPQDELSAN-HVLAERRRREKLNERFIILRSLVPFVTKMDKASILG 516
Query: 373 EAIEYLKSLQLQLQ 386
+ IEY+K L+ ++Q
Sbjct: 517 DTIEYVKQLRNKIQ 530
>gi|338192055|gb|AEI84807.1| bHLH transcription factor [Malus x domestica]
Length = 709
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 313 FESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLD 372
F+ G G+ T R G+ + +A H L+ERRRR+++NE+ L+ L+P K DKAS+L
Sbjct: 459 FQEGEGS-TRLRKGTPQDELSAN-HVLAERRRREKLNERFIILRSLVPFVTKMDKASILG 516
Query: 373 EAIEYLKSLQLQLQ 386
+ IEY+K L+ ++Q
Sbjct: 517 DTIEYVKQLRNKIQ 530
>gi|297746360|emb|CBI16416.3| unnamed protein product [Vitis vinifera]
Length = 297
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E+MR LQEL+P+ +K T+ + MLD A++Y+K LQ Q++
Sbjct: 221 AKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQKQVK 280
Query: 387 VM 388
+
Sbjct: 281 TL 282
>gi|2335192|gb|AAB72192.1| bHLH protein [Arabidopsis thaliana]
Length = 597
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H LSE++RR+++NE+ L+ +IP +K DK S+LD+ IEYL+ LQ ++Q
Sbjct: 407 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQ 456
>gi|224057820|ref|XP_002299340.1| predicted protein [Populus trichocarpa]
gi|222846598|gb|EEE84145.1| predicted protein [Populus trichocarpa]
Length = 222
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQ 382
RR A + H+L+ER RR+RI+ KM+ LQ L+P C++ T KA +LDE I Y++SL+
Sbjct: 79 ARRGEATDSHSLAERVRRERISAKMKLLQSLVPGCDQITGKALILDEIIRYVQSLK 134
>gi|302805717|ref|XP_002984609.1| hypothetical protein SELMODRAFT_423809 [Selaginella moellendorffii]
gi|300147591|gb|EFJ14254.1| hypothetical protein SELMODRAFT_423809 [Selaginella moellendorffii]
Length = 298
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 268 PTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS 327
P + S+S S + Q+T N+L + R+ +DS S K R G+
Sbjct: 183 PRIISNSCSSPTRKRSADDQNTT-NALSK--REKIDSSPASSCCTTALNTNLKPRSRQGT 239
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
A + +++ R+RR+RI+++++ LQ+L+P+ +K D +ML++AI Y+K +QLQLQ
Sbjct: 240 -----ANDPQSIAARQRRERISQRLKILQDLVPNGSKVDLVTMLEKAINYVKFMQLQLQA 294
>gi|222635879|gb|EEE66011.1| hypothetical protein OsJ_21966 [Oryza sativa Japonica Group]
Length = 325
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M L+EL+P C+K A +LDE I +++SLQ Q++
Sbjct: 148 ARRGQATDSHSLAERARREKINARMELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVE 207
Query: 387 VMWM 390
+ M
Sbjct: 208 YLSM 211
>gi|168048993|ref|XP_001776949.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671650|gb|EDQ58198.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 517
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR +I+E+M+ LQ+L+P +K T+ + MLDE +EY+KSLQ Q+Q
Sbjct: 385 AKRGCATHPRSIAERVRRTKISERMKKLQDLVPSMDKQTNTSDMLDETVEYVKSLQRQVQ 444
Query: 387 -----VMWMGSGMAPLMFPGMQ 403
V+ + + A +F Q
Sbjct: 445 ELSDTVVRLEAAAAQKIFSDFQ 466
>gi|414589820|tpg|DAA40391.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 244
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR +I+E++R LQEL+P+ K T+ A MLD A++Y+K LQ Q++
Sbjct: 162 AKRGCATHPRSIAERVRRTKISERIRKLQELVPNMEKQTNTADMLDLAVDYIKDLQKQVK 221
Query: 387 VM 388
V+
Sbjct: 222 VL 223
>gi|15222504|ref|NP_176552.1| transcription factor EGL1 [Arabidopsis thaliana]
gi|42571979|ref|NP_974080.1| transcription factor EGL1 [Arabidopsis thaliana]
gi|334183608|ref|NP_001185302.1| transcription factor EGL1 [Arabidopsis thaliana]
gi|34222624|sp|Q9CAD0.1|EGL1_ARATH RecName: Full=Transcription factor EGL1; AltName: Full=Basic
helix-loop-helix protein 2; Short=AtMYC146;
Short=AtbHLH2; Short=bHLH 2; AltName: Full=Protein
ENHANCER OF GLABRA 3; AltName: Full=Transcription factor
EN 30; AltName: Full=bHLH transcription factor bHLH002
gi|12324939|gb|AAG52418.1|AC011622_6 putative transcription factor; 68971-66046 [Arabidopsis thaliana]
gi|18026952|gb|AAL55709.1|AF251687_1 putative transcription factor BHLH2 [Arabidopsis thaliana]
gi|225898046|dbj|BAH30355.1| hypothetical protein [Arabidopsis thaliana]
gi|332196003|gb|AEE34124.1| transcription factor EGL1 [Arabidopsis thaliana]
gi|332196004|gb|AEE34125.1| transcription factor EGL1 [Arabidopsis thaliana]
gi|332196005|gb|AEE34126.1| transcription factor EGL1 [Arabidopsis thaliana]
Length = 596
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H LSE++RR+++NE+ L+ +IP +K DK S+LD+ IEYL+ LQ ++Q
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQ 455
>gi|308084333|gb|ADO13282.1| bHLH [Pisum sativum]
Length = 652
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H L+ERRRR+++NE+ L+ L+P K DKAS+L + IEYLK L+ ++Q
Sbjct: 469 HVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQ 518
>gi|357500329|ref|XP_003620453.1| Transcription factor BEE [Medicago truncatula]
gi|355495468|gb|AES76671.1| Transcription factor BEE [Medicago truncatula]
Length = 263
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQL 383
RR +A + H+L+ER RR +INEK++ LQ ++P C KT A MLDE I Y SL+L
Sbjct: 157 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYFLSLKL 213
>gi|357519927|ref|XP_003630252.1| Transcription factor HEC3 [Medicago truncatula]
gi|355524274|gb|AET04728.1| Transcription factor HEC3 [Medicago truncatula]
Length = 275
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q++++
Sbjct: 127 VAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIKLL 176
>gi|224127674|ref|XP_002329336.1| predicted protein [Populus trichocarpa]
gi|222870790|gb|EEF07921.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 386
+R +A + H+++ER RR++IN K+R LQ+L+P C+++ A ML+E I Y+ SLQ Q++
Sbjct: 150 AKRGQATDSHSIAERVRREKINNKLRCLQDLVPGCHRSMGMAVMLEEIINYVHSLQNQVE 209
Query: 387 VMWMGSGMA 395
+ M A
Sbjct: 210 FLSMELAAA 218
>gi|119655907|gb|ABL86246.1| BHLHogu [Brassica rapa subsp. chinensis]
Length = 122
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD-KASMLDEAIEYLKSLQLQLQ 386
RR +A + H+L+ER RR++IN +M+ L+EL+P C+K A +LDE I +++SLQ Q++
Sbjct: 35 ARRGQATDSHSLAERARREKINARMKLLRELVPGCDKIQGTALVLDEIINHVQSLQRQVE 94
Query: 387 VMWM 390
++ M
Sbjct: 95 MLSM 98
>gi|218194642|gb|EEC77069.1| hypothetical protein OsI_15464 [Oryza sativa Indica Group]
Length = 403
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 344 RRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQVMWMGSGMAPLMFPGM 402
RR+RI+E+M+ LQ L+P CNK T KA MLDE I Y++SLQ Q++ + M
Sbjct: 205 RRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQVEFLSMKLATMNPQLDFD 264
Query: 403 QHYMSRMGMGMGPPPL-----PSVTNPMHFSRVP 431
HYM M P P P+ T ++ P
Sbjct: 265 SHYMPSKDMSHMPVPAYPSSDPTTTTAFSYTGSP 298
>gi|312165807|gb|ADQ38902.1| bHLH transcription factor [Musa acuminata AAA Group]
Length = 331
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 36/180 (20%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDKASMLDEAIE 376
G + Q+ G+ R+ H+ +E+RRR +IN++ + L++LIPH + K DKAS L E IE
Sbjct: 32 GKSSEQKPGTPTTPRSK--HSATEQRRRCKINDRFQILRDLIPHSDQKRDKASFLLEVIE 89
Query: 377 YLKSLQLQLQVMWMGSGMAPLMFPGMQHYMSRM---------GMGMGPPP--LPSVTNPM 425
Y+K LQ ++Q FPG ++ G GM PP + +
Sbjct: 90 YIKFLQEKVQKYE--------SFPGWNQENEKLMPWSSNQGPGDGMVDPPNLTKNGSQSG 141
Query: 426 HFSRVPLVDQS-----MSMAQAQN--RAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGF 478
H VD S MS++ A N A M +VL P+ SN+ R GF
Sbjct: 142 HLFSGKFVDSSIPGAPMSLSNAHNVAEADMSPGAVLVPM-------QSNYYASVGRGSGF 194
>gi|297801316|ref|XP_002868542.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297314378|gb|EFH44801.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 300
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 40/50 (80%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
L+ + RR+RI+E+++ LQEL+P+ K D +ML++AI Y+K LQ+Q++V+
Sbjct: 214 LAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVL 263
>gi|357440757|ref|XP_003590656.1| Transcription factor TT8 [Medicago truncatula]
gi|355479704|gb|AES60907.1| Transcription factor TT8 [Medicago truncatula]
Length = 656
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H L+ERRRR+++NE+ L+ L+P K DKAS+L + IEYLK L+ ++Q
Sbjct: 471 HVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQ 520
>gi|218478035|dbj|BAH03388.1| bHLH transcriptional factor [Gentiana triflora]
gi|218478037|dbj|BAH03387.1| bHLH transcriptional factor [Gentiana triflora]
Length = 661
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H LSERRRR+++NE+ L+ L+P K DKAS+L + IEY+K L+ ++Q
Sbjct: 477 HVLSERRRREKLNERFITLRSLVPFVTKMDKASVLGDTIEYVKQLRKKIQ 526
>gi|115479871|ref|NP_001063529.1| Os09g0487900 [Oryza sativa Japonica Group]
gi|113631762|dbj|BAF25443.1| Os09g0487900 [Oryza sativa Japonica Group]
Length = 401
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E++R LQEL+P+ K T+ A MLD A++Y+K LQ Q++
Sbjct: 321 AKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQKQVK 380
Query: 387 VM 388
V+
Sbjct: 381 VL 382
>gi|218197191|gb|EEC79618.1| hypothetical protein OsI_20818 [Oryza sativa Indica Group]
Length = 344
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+R++E++R LQ L+P +K D A+MLDEA YLK L+ QL+ +
Sbjct: 236 QTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEAL 287
>gi|356518753|ref|XP_003528042.1| PREDICTED: uncharacterized protein LOC100803688 [Glycine max]
Length = 234
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q++++
Sbjct: 122 VAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAILYVKFLKRQIRLL 171
>gi|297724285|ref|NP_001174506.1| Os05g0541400 [Oryza sativa Japonica Group]
gi|255676533|dbj|BAH93234.1| Os05g0541400 [Oryza sativa Japonica Group]
Length = 414
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+R++E++R LQ L+P +K D A+MLDEA YLK L+ QL+ +
Sbjct: 306 QTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEAL 357
>gi|55908877|gb|AAV67820.1| unknown protein [Oryza sativa Japonica Group]
Length = 416
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+R++E++R LQ L+P +K D A+MLDEA YLK L+ QL+ +
Sbjct: 308 QTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEAL 359
>gi|300394152|gb|ADK11703.1| enhancer of glabra 3 [Brassica rapa subsp. rapa]
Length = 597
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H LSER+RR+++N++ L+ +IP +K DK S+LD+ IEYL+ LQ ++Q
Sbjct: 410 HALSERKRREKLNDRFMTLRSMIPSISKIDKVSILDDTIEYLQELQRRVQ 459
>gi|356522216|ref|XP_003529743.1| PREDICTED: transcription factor bHLH87-like [Glycine max]
Length = 431
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+RI+EK+R LQ+L+P +K D ASMLDEA YLK L+ Q++ +
Sbjct: 345 VAARHRRERISEKIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKAL 394
>gi|356507477|ref|XP_003522492.1| PREDICTED: uncharacterized protein LOC100779374 [Glycine max]
Length = 243
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q++ +
Sbjct: 131 VAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRFL 180
>gi|297809111|ref|XP_002872439.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297318276|gb|EFH48698.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 263
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI++++R LQEL+P+ +K T+ A ML+EA+EY+K LQ Q+Q
Sbjct: 188 AKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQ 247
>gi|255583421|ref|XP_002532470.1| DNA binding protein, putative [Ricinus communis]
gi|223527828|gb|EEF29926.1| DNA binding protein, putative [Ricinus communis]
Length = 327
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 41/50 (82%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ + RR+RI+E+++ LQEL+P+ +K D +ML++AI Y+K LQLQ++V+
Sbjct: 238 IAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVL 287
>gi|255583282|ref|XP_002532405.1| DNA binding protein, putative [Ricinus communis]
gi|223527901|gb|EEF29990.1| DNA binding protein, putative [Ricinus communis]
Length = 355
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E+MR LQEL+P+ +K T+ A MLD A++Y+K LQ Q +
Sbjct: 273 AKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQYK 332
Query: 387 VM 388
+
Sbjct: 333 TL 334
>gi|125564183|gb|EAZ09563.1| hypothetical protein OsI_31842 [Oryza sativa Indica Group]
Length = 400
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E++R LQEL+P+ K T+ A MLD A++Y+K LQ Q++
Sbjct: 320 AKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQKQVK 379
Query: 387 VM 388
V+
Sbjct: 380 VL 381
>gi|15219658|ref|NP_176820.1| transcription factor bHLH83 [Arabidopsis thaliana]
gi|75308842|sp|Q9C707.1|BH083_ARATH RecName: Full=Transcription factor bHLH83; AltName: Full=Basic
helix-loop-helix protein 83; Short=AtbHLH83; Short=bHLH
83; AltName: Full=Transcription factor EN 112; AltName:
Full=bHLH transcription factor bHLH083
gi|12322259|gb|AAG51154.1|AC074025_4 unknown protein [Arabidopsis thaliana]
gi|22135862|gb|AAM91513.1| unknown protein [Arabidopsis thaliana]
gi|30023790|gb|AAP13428.1| At1g66470 [Arabidopsis thaliana]
gi|332196391|gb|AEE34512.1| transcription factor bHLH83 [Arabidopsis thaliana]
Length = 298
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 40/50 (80%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
L+ + RR+RI+E+++ LQEL+P+ K D +ML++AI Y+K LQ+Q++V+
Sbjct: 208 LAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVL 257
>gi|15233768|ref|NP_192657.1| transcription factor bHLH81 [Arabidopsis thaliana]
gi|75311758|sp|Q9M0R0.1|BH081_ARATH RecName: Full=Transcription factor bHLH81; AltName: Full=Basic
helix-loop-helix protein 81; Short=AtbHLH81; Short=bHLH
81; AltName: Full=Transcription factor EN 72; AltName:
Full=bHLH transcription factor bHLH081
gi|7267561|emb|CAB78042.1| putative protein [Arabidopsis thaliana]
gi|34146832|gb|AAQ62424.1| At4g09180 [Arabidopsis thaliana]
gi|110741264|dbj|BAF02182.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|332657332|gb|AEE82732.1| transcription factor bHLH81 [Arabidopsis thaliana]
Length = 262
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI++++R LQEL+P+ +K T+ A ML+EA+EY+K LQ Q+Q
Sbjct: 186 AKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQ 245
Query: 387 VM 388
+
Sbjct: 246 EL 247
>gi|326507862|dbj|BAJ86674.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 405
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ R RR+R+++++R LQ+L+P +K D ASMLDEA YLK L+ Q+Q +
Sbjct: 287 TVAARLRRERVSDRLRVLQKLVPGGSKMDTASMLDEAASYLKFLKSQVQAL 337
>gi|380006415|gb|AFD29598.1| DEL65 [Gossypium arboreum]
Length = 620
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 330 RSRAAEV---HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
R A E+ H LSER+RR++INE++ L+ L+P NK DK S+LD IEYL++L+
Sbjct: 427 RPEADEICGNHVLSERKRREKINERLMILKSLVPANNKADKVSILDVTIEYLQALE 482
>gi|226529517|ref|NP_001151233.1| helix-loop-helix DNA-binding domain containing protein [Zea mays]
gi|195645224|gb|ACG42080.1| helix-loop-helix DNA-binding domain containing protein [Zea mays]
gi|414886017|tpg|DAA62031.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 408
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR +I+E++R LQEL+P+ K T+ A MLD A++Y+K LQ Q++
Sbjct: 327 AKRGCATHPRSIAERVRRTKISERIRKLQELVPNMEKQTNTADMLDLAVDYIKDLQKQVK 386
Query: 387 VM 388
V+
Sbjct: 387 VL 388
>gi|356499097|ref|XP_003518380.1| PREDICTED: putative transcription factor bHLH086-like [Glycine max]
Length = 295
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 41/50 (82%)
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
++ + RR+RI+E+++ LQEL+P+ +K D +ML++AI Y+K LQLQ++V+
Sbjct: 215 VAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVL 264
>gi|125606147|gb|EAZ45183.1| hypothetical protein OsJ_29826 [Oryza sativa Japonica Group]
Length = 379
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 386
+R A +++ER RR RI+E++R LQEL+P+ K T+ A MLD A++Y+K LQ Q++
Sbjct: 299 AKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQKQVK 358
Query: 387 VM 388
V+
Sbjct: 359 VL 360
>gi|413950402|gb|AFW83051.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 430
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
++ R+RR+RI+E++R LQ+L+P K D ASMLDEA YL+ LQ Q++
Sbjct: 325 QTVAARQRRERISERLRVLQKLVPGGAKMDTASMLDEAASYLRFLQSQVR 374
>gi|380006417|gb|AFD29599.1| DEL61 [Gossypium arboreum]
Length = 603
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 39/50 (78%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ 386
H L+ERRRR++INE++ L+ L+P +K DK S+LD+ IEYL+ L+ +++
Sbjct: 425 HVLTERRRREKINERLTILKSLVPTNSKADKVSILDDTIEYLQDLERRVE 474
>gi|73760266|dbj|BAE20058.1| bHLH transcription factor [Lilium hybrid division I]
Length = 680
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 313 FESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLD 372
ESG G+ ++ + + H L+ERRRR+++NE+ L+ L+P K DKAS+L
Sbjct: 449 LESGVGDGESKFQKGTLQEELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILG 508
Query: 373 EAIEYLKSLQLQLQ 386
+ IEY+ L+ ++Q
Sbjct: 509 DTIEYVNQLRRRIQ 522
>gi|357142794|ref|XP_003572696.1| PREDICTED: transcription factor bHLH128-like [Brachypodium
distachyon]
Length = 317
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 329 RRSRAAEVH--NLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQL 385
R R H +++ER RR RI+EK+R LQ+L+P+ +K T + MLD A+E++K LQ QL
Sbjct: 242 RAKRGCATHPRSIAERERRTRISEKLRKLQDLVPNMDKQTSTSDMLDLAVEHIKGLQSQL 301
Query: 386 QVM 388
Q M
Sbjct: 302 QAM 304
>gi|163311838|gb|ABY26932.1| putative anthocyanin transcriptional regulator [Ipomoea coccinea]
Length = 661
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGMA 395
H L+ERRRR+++NE+ L+ L+P K DKAS+L + IEY+K L+ ++Q + G A
Sbjct: 464 HVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRRIQELEAARGSA 522
>gi|297821501|ref|XP_002878633.1| hypothetical protein ARALYDRAFT_481138 [Arabidopsis lyrata subsp.
lyrata]
gi|297324472|gb|EFH54892.1| hypothetical protein ARALYDRAFT_481138 [Arabidopsis lyrata subsp.
lyrata]
Length = 321
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G+ K +G R + H L+ER+RR ++NE++ AL L+P KTDKA++L++AI
Sbjct: 113 GSKRKDCVHNGGRREPHLLKEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAI 172
Query: 376 EYLKSLQ 382
++LK LQ
Sbjct: 173 KHLKQLQ 179
>gi|255552420|ref|XP_002517254.1| hypothetical protein RCOM_1461320 [Ricinus communis]
gi|223543625|gb|EEF45154.1| hypothetical protein RCOM_1461320 [Ricinus communis]
Length = 207
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 39/51 (76%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVM 388
+++ R RR+RI+EK+R LQ L+P K D ASMLDEAI Y+K L+ Q++++
Sbjct: 110 SVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKKQIRLL 160
>gi|297846606|ref|XP_002891184.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297337026|gb|EFH67443.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQV 387
+R A +++ER RR RI++++R LQEL+P+ +K T+ A ML+EA+EY+K+LQ Q+Q
Sbjct: 181 KRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQGQIQE 240
Query: 388 M 388
+
Sbjct: 241 L 241
>gi|13346182|gb|AAK19613.1|AF336280_1 GHDEL65 [Gossypium hirsutum]
Length = 620
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 36/46 (78%)
Query: 337 HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQ 382
H LSER+RR++INE++ L+ L+P NK DK S+LD IEYL++L+
Sbjct: 437 HVLSERKRREKINERLMMLKSLVPANNKADKVSILDVTIEYLQTLE 482
>gi|327194899|gb|AEA34965.1| putative transcription factor BHLH2 [Ipomoea batatas]
Length = 667
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 312 GFESGAGNKTAQRSGSCRRSRAAEV---HNLSERRRRDRINEKMRALQELIPHCNKTDKA 368
G + G+ T S C+ + E H L+ERRRR+++NE+ L+ L+P K DKA
Sbjct: 445 GAAADGGDATIPSSKLCKAAPQEEPNANHVLAERRRREKLNERFIILRSLVPFVTKMDKA 504
Query: 369 SMLDEAIEYLKSLQLQLQVMWMGSGMA 395
S+L + IEY+K L+ ++Q + G A
Sbjct: 505 SILGDTIEYVKQLRRRIQELEAARGSA 531
>gi|297736219|emb|CBI24857.3| unnamed protein product [Vitis vinifera]
Length = 246
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 329 RRSRAAEVH--NLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYLKSLQLQL 385
R R H +++ER RR RI+E+MR LQEL P+ +K T+ A MLD A+EY+K LQ Q+
Sbjct: 172 RAKRGCATHPRSIAERVRRTRISERMRKLQELFPNMDKQTNTADMLDLAVEYIKDLQKQV 231
Query: 386 QVM 388
+ +
Sbjct: 232 KTL 234
>gi|302793827|ref|XP_002978678.1| hypothetical protein SELMODRAFT_418491 [Selaginella moellendorffii]
gi|300153487|gb|EFJ20125.1| hypothetical protein SELMODRAFT_418491 [Selaginella moellendorffii]
Length = 298
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 277 SGSSFNRTSKQSTGDNSLKR--KSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAA 334
S SS + T K+S D + R+ +DS S K R G+ A
Sbjct: 187 SNSSSSPTRKRSADDQNTTNAFSKREKIDSSPASSCCTTALNTNLKPRSRQGT-----AN 241
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387
+ +++ R+RR+RI+++++ LQ+L+P+ +K D +ML++AI Y+K +QLQLQ
Sbjct: 242 DPQSIAARQRRERISQRLKILQDLVPNGSKVDLVTMLEKAINYVKFMQLQLQA 294
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.127 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,445,288,516
Number of Sequences: 23463169
Number of extensions: 355146727
Number of successful extensions: 841871
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 2681
Number of HSP's that attempted gapping in prelim test: 832381
Number of HSP's gapped (non-prelim): 9309
length of query: 529
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 382
effective length of database: 8,910,109,524
effective search space: 3403661838168
effective search space used: 3403661838168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 79 (35.0 bits)