BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009660
         (529 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J0F|A Chain A, Structural Basis For Non-Competitive Product Inhibition In
           Human Thymidine Phosphorylase: Implication For Drug
           Design
 pdb|2J0F|B Chain B, Structural Basis For Non-Competitive Product Inhibition In
           Human Thymidine Phosphorylase: Implication For Drug
           Design
 pdb|2J0F|C Chain C, Structural Basis For Non-Competitive Product Inhibition In
           Human Thymidine Phosphorylase: Implication For Drug
           Design
 pdb|2J0F|D Chain D, Structural Basis For Non-Competitive Product Inhibition In
           Human Thymidine Phosphorylase: Implication For Drug
           Design
          Length = 482

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 129 DGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFV--TNQEPYEGGVLF 186
           D +GE + G P P  +P+QL E IR+ ++   + +  + GF    V  + Q    G +L 
Sbjct: 17  DFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLM 76

Query: 187 KGNLRG 192
              LRG
Sbjct: 77  AIRLRG 82


>pdb|2WK5|A Chain A, Structural Features Of Native Human Thymidine
           Phosphorylase And In Complex With 5-Iodouracil
 pdb|2WK5|B Chain B, Structural Features Of Native Human Thymidine
           Phosphorylase And In Complex With 5-Iodouracil
 pdb|2WK5|C Chain C, Structural Features Of Native Human Thymidine
           Phosphorylase And In Complex With 5-Iodouracil
 pdb|2WK5|D Chain D, Structural Features Of Native Human Thymidine
           Phosphorylase And In Complex With 5-Iodouracil
 pdb|2WK6|A Chain A, Structural Features Of Native Human Thymidine
           Phosphorylase And In Complex With 5-Iodouracil
 pdb|2WK6|B Chain B, Structural Features Of Native Human Thymidine
           Phosphorylase And In Complex With 5-Iodouracil
          Length = 482

 Score = 30.8 bits (68), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 129 DGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFV--TNQEPYEGGVLF 186
           D +GE + G P P  +P+QL E IR+ ++   + +  + GF    V  + Q    G +L 
Sbjct: 17  DFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLM 76

Query: 187 KGNLRG 192
              LRG
Sbjct: 77  AIRLRG 82


>pdb|1UOU|A Chain A, Crystal Structure Of Human Thymidine Phosphorylase In
           Complex With A Small Molecule Inhibitor
          Length = 474

 Score = 30.8 bits (68), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 129 DGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFV--TNQEPYEGGVLF 186
           D +GE + G P P  +P+QL E IR+ ++   + +  + GF    V  + Q    G +L 
Sbjct: 11  DFSGEGSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLM 70

Query: 187 KGNLRG 192
              LRG
Sbjct: 71  AIRLRG 76


>pdb|3B4R|A Chain A, Site-2 Protease From Methanocaldococcus Jannaschii
 pdb|3B4R|B Chain B, Site-2 Protease From Methanocaldococcus Jannaschii
          Length = 224

 Score = 28.9 bits (63), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 45/178 (25%)

Query: 273 LSTFDNLNLLTNGLPGALVTALV---IGVHELGHILAAKSTGVELGVPYFVPSWQIGSFG 329
           L     L+++ N +  A++  L+   + +HELGH   AK  GV++     +P   IG   
Sbjct: 25  LVVIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP---IGGVA 81

Query: 330 AITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIGIVVDASVFHESXX 389
            + +I      +E  L++  AGPL                    GI +++ +  F     
Sbjct: 82  MMDKI-----PKEGELRIGIAGPLVSFII---------------GIVLLIVSQFF----- 116

Query: 390 XXXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 447
                     D+  +G P+     ++    G      N IPA  +DGGRI  A+  +K
Sbjct: 117 ----------DININGYPLLYTLSLLNLMLG----GFNLIPAFPMDGGRILRAILSKK 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,160,418
Number of Sequences: 62578
Number of extensions: 542723
Number of successful extensions: 956
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 6
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)