Query 009661
Match_columns 529
No_of_seqs 219 out of 931
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cr5_A Reproduction 8; UBX dom 99.9 1.4E-21 4.8E-26 170.4 9.8 90 437-529 9-98 (109)
2 2dzk_A UBX domain-containing p 99.8 1.4E-19 4.7E-24 158.1 10.8 85 444-529 6-90 (109)
3 3qx1_A FAS-associated factor 1 99.8 1.8E-19 6.2E-24 149.6 10.7 79 448-528 4-82 (84)
4 1wj4_A KIAA0794 protein; UBX d 99.8 8.6E-19 2.9E-23 156.6 10.4 83 445-529 37-119 (124)
5 1s3s_G P47 protein; AAA ATPase 99.6 4.2E-16 1.4E-20 139.5 8.5 76 449-528 50-126 (127)
6 2kzr_A Ubiquitin thioesterase 98.5 1E-07 3.5E-12 78.6 5.3 74 453-527 2-75 (86)
7 2pjh_A Protein NPL4, nuclear p 97.2 0.00029 9.8E-09 58.1 4.6 75 452-529 5-80 (80)
8 1ttn_A DC-UBP, dendritic cell- 97.2 0.0013 4.3E-08 56.1 8.3 81 441-527 13-93 (106)
9 2dzi_A Ubiquitin-like protein 96.8 0.007 2.4E-07 47.7 9.2 72 449-526 5-76 (81)
10 1wju_A NEDD8 ultimate buster-1 96.8 0.0045 1.6E-07 53.5 8.6 73 448-526 12-88 (100)
11 1ndd_A NEDD8, protein (ubiquit 96.8 0.0053 1.8E-07 47.5 8.1 69 453-527 2-70 (76)
12 3mtn_B UBA80, ubcep1, ubiquiti 96.7 0.0062 2.1E-07 48.4 8.1 71 451-527 3-73 (85)
13 3a9j_A Ubiquitin; protein comp 96.7 0.0063 2.2E-07 47.1 7.7 69 453-527 2-70 (76)
14 3v6c_B Ubiquitin; structural g 96.6 0.011 3.9E-07 48.4 9.1 73 449-527 15-87 (91)
15 1wh3_A 59 kDa 2'-5'-oligoadeny 96.5 0.012 4.2E-07 47.3 8.9 72 450-527 6-77 (87)
16 2bwf_A Ubiquitin-like protein 96.5 0.0084 2.9E-07 46.8 7.7 69 452-527 5-73 (77)
17 1yx5_B Ubiquitin; proteasome, 96.5 0.011 3.7E-07 49.1 8.4 69 453-527 2-70 (98)
18 2hj8_A Interferon-induced 17 k 96.4 0.013 4.3E-07 48.0 8.5 71 451-527 4-74 (88)
19 3dbh_I NEDD8; cell cycle, acti 96.4 0.015 5.1E-07 46.7 8.7 73 448-526 9-81 (88)
20 1wjn_A Tubulin-folding protein 96.3 0.016 5.6E-07 48.3 8.8 79 449-528 7-91 (97)
21 2wyq_A HHR23A, UV excision rep 96.2 0.024 8.2E-07 45.2 9.0 72 450-527 4-78 (85)
22 3phx_B Ubiquitin-like protein 96.2 0.022 7.6E-07 45.0 8.6 71 451-527 4-74 (79)
23 4hcn_B Polyubiquitin, ubiquiti 96.2 0.014 4.8E-07 48.8 7.5 72 449-526 20-91 (98)
24 3k9o_B Ubiquitin, UBB+1; E2-25 96.1 0.017 5.7E-07 47.4 7.7 70 452-527 2-71 (96)
25 1uel_A HHR23B, UV excision rep 96.1 0.027 9.1E-07 46.8 8.8 69 453-527 2-73 (95)
26 4dwf_A HLA-B-associated transc 96.1 0.027 9.1E-07 45.8 8.5 70 450-526 4-73 (90)
27 1wyw_B Ubiquitin-like protein 96.0 0.017 5.7E-07 48.4 7.4 72 449-526 19-90 (97)
28 2uyz_B Small ubiquitin-related 96.0 0.02 6.9E-07 45.3 7.3 70 451-526 3-72 (79)
29 2faz_A Ubiquitin-like containi 96.0 0.023 8E-07 44.7 7.6 70 451-526 2-73 (78)
30 2kan_A Uncharacterized protein 95.9 0.038 1.3E-06 46.2 9.2 72 449-526 13-84 (94)
31 1wy8_A NP95-like ring finger p 95.9 0.041 1.4E-06 44.4 9.2 72 449-526 5-78 (89)
32 1j8c_A Ubiquitin-like protein 95.9 0.041 1.4E-06 48.6 9.7 72 449-527 30-101 (125)
33 1wx8_A Riken cDNA 4931431F19; 95.9 0.032 1.1E-06 46.0 8.3 71 449-526 15-85 (96)
34 3n3k_B Ubiquitin; hydrolase, p 95.9 0.017 6E-07 45.8 6.5 70 452-527 4-73 (85)
35 1we6_A Splicing factor, putati 95.7 0.051 1.7E-06 46.4 9.3 72 450-527 26-101 (111)
36 1sif_A Ubiquitin; hydrophobic 95.7 0.03 1E-06 45.8 7.3 70 451-526 9-78 (88)
37 1uh6_A Ubiquitin-like 5; beta- 95.7 0.047 1.6E-06 47.2 8.8 73 449-527 26-98 (100)
38 1wx7_A Ubiquilin 3; ubiquitin- 95.7 0.042 1.4E-06 46.4 8.4 72 449-527 15-86 (106)
39 1wia_A Hypothetical ubiquitin- 95.7 0.048 1.6E-06 44.9 8.6 70 449-526 5-74 (95)
40 2klc_A Ubiquilin-1; ubiquitin- 95.6 0.045 1.5E-06 46.2 8.4 70 450-526 24-93 (101)
41 4eew_A Large proline-rich prot 95.6 0.049 1.7E-06 44.0 8.2 71 449-526 15-85 (88)
42 3vdz_A Ubiquitin-40S ribosomal 95.5 0.044 1.5E-06 47.1 8.2 71 450-526 34-104 (111)
43 2ojr_A Ubiquitin; lanthide-bin 95.5 0.056 1.9E-06 46.2 8.7 72 450-527 34-105 (111)
44 1we7_A SF3A1 protein; structur 95.5 0.045 1.5E-06 47.1 8.1 72 450-527 24-105 (115)
45 3b08_A Polyubiquitin-C, ubiqui 95.4 0.05 1.7E-06 47.4 8.3 70 451-526 76-145 (152)
46 2kk8_A Uncharacterized protein 95.4 0.041 1.4E-06 45.0 7.2 71 450-526 9-80 (84)
47 3m62_B UV excision repair prot 95.3 0.042 1.4E-06 46.8 7.3 69 452-526 2-70 (106)
48 4fbj_B NEDD8; effector-HOST ta 95.3 0.049 1.7E-06 44.5 7.3 68 453-526 2-69 (88)
49 1yqb_A Ubiquilin 3; structural 95.3 0.06 2E-06 45.5 7.9 71 449-526 20-90 (100)
50 3b08_A Polyubiquitin-C, ubiqui 94.8 0.077 2.6E-06 46.2 7.7 69 453-527 2-70 (152)
51 2kdi_A Ubiquitin, vacuolar pro 94.8 0.08 2.7E-06 45.8 7.7 72 450-527 8-79 (114)
52 1v86_A DNA segment, CHR 7, way 94.8 0.094 3.2E-06 43.8 7.8 71 448-526 14-84 (95)
53 2kjr_A CG11242; UBL, ubiquitin 94.7 0.093 3.2E-06 44.4 7.6 78 449-527 13-93 (95)
54 3u30_A Ubiquitin, linear DI-ub 94.7 0.09 3.1E-06 47.7 8.0 73 448-526 17-89 (172)
55 1wxv_A BAG-family molecular ch 94.7 0.21 7.2E-06 40.8 9.5 73 449-527 5-82 (92)
56 4a20_A Ubiquitin-like protein 94.6 0.14 4.9E-06 43.6 8.6 72 449-526 17-92 (98)
57 2kd0_A LRR repeats and ubiquit 94.5 0.094 3.2E-06 42.8 7.0 70 450-526 11-80 (85)
58 1q0v_A Hydrophilic protein; ha 94.3 0.045 1.5E-06 46.1 4.7 55 160-214 11-77 (81)
59 1wgd_A Homocysteine-responsive 94.3 0.21 7.3E-06 40.9 8.8 71 450-526 6-82 (93)
60 3plu_A Ubiquitin-like modifier 94.2 0.17 5.9E-06 43.3 8.2 72 449-526 19-90 (93)
61 2l7r_A Ubiquitin-like protein 94.0 0.13 4.5E-06 42.6 7.0 69 450-526 18-86 (93)
62 3rt3_B Ubiquitin-like protein 93.9 0.16 5.6E-06 45.2 7.9 70 452-526 3-73 (159)
63 3b1l_X E3 ubiquitin-protein li 93.0 0.01 3.5E-07 46.5 0.0 68 453-526 2-69 (76)
64 1v5o_A 1700011N24RIK protein; 93.8 0.26 8.8E-06 41.4 8.6 73 450-527 6-82 (102)
65 1x1m_A Ubiquitin-like protein 93.8 0.18 6E-06 42.9 7.5 71 450-526 11-96 (107)
66 3rt3_B Ubiquitin-like protein 93.8 0.24 8.3E-06 44.0 8.7 72 450-527 80-151 (159)
67 1wgg_A Ubiquitin carboxyl-term 93.7 0.13 4.5E-06 43.1 6.5 70 449-526 5-75 (96)
68 1v2y_A 3300001G02RIK protein; 93.7 0.15 5.1E-06 44.2 6.9 72 450-526 6-92 (105)
69 2lxa_A Ubiquitin-like protein 93.6 0.16 5.5E-06 42.3 6.8 70 452-526 2-74 (87)
70 3m63_B Ubiquitin domain-contai 93.1 0.091 3.1E-06 44.5 4.6 69 451-526 28-96 (101)
71 2gow_A HCG-1 protein, ubiquiti 93.1 0.64 2.2E-05 41.4 10.3 66 449-519 15-88 (125)
72 2d07_B Ubiquitin-like protein 93.0 0.37 1.3E-05 40.4 8.2 72 449-526 15-86 (93)
73 1wz0_A Ubiquitin-like protein 93.0 0.51 1.7E-05 40.6 9.2 72 449-526 22-93 (104)
74 3q3f_A Ribonuclease/ubiquitin 92.9 0.24 8.3E-06 47.0 7.6 69 452-526 106-174 (189)
75 1v5t_A 8430435I17RIK protein; 92.9 0.35 1.2E-05 39.7 7.7 72 450-526 6-79 (90)
76 3a4r_A Nfatc2-interacting prot 92.9 0.58 2E-05 37.9 8.9 72 449-526 5-77 (79)
77 2io0_B Small ubiquitin-related 92.8 0.5 1.7E-05 39.7 8.6 71 450-526 4-74 (91)
78 2kdb_A Homocysteine-responsive 92.7 0.34 1.2E-05 41.2 7.6 72 449-526 21-98 (99)
79 2kj6_A Tubulin folding cofacto 92.7 0.63 2.1E-05 39.5 9.2 79 449-528 12-94 (97)
80 2eke_C Ubiquitin-like protein 92.6 0.48 1.6E-05 41.1 8.5 72 448-526 28-99 (106)
81 3u30_A Ubiquitin, linear DI-ub 92.6 0.3 1E-05 44.3 7.5 70 451-526 96-165 (172)
82 1wm3_A Ubiquitin-like protein 92.5 0.47 1.6E-05 37.6 7.7 69 452-526 2-70 (72)
83 2io1_B Small ubiquitin-related 92.5 0.36 1.2E-05 40.6 7.4 72 449-526 5-76 (94)
84 2k8h_A Small ubiquitin protein 92.2 0.52 1.8E-05 41.1 8.2 72 449-526 24-95 (110)
85 3l0w_B Monoubiquitinated proli 91.9 0.49 1.7E-05 43.6 8.1 69 453-527 2-70 (169)
86 2dzj_A Synaptic glycoprotein S 91.8 0.57 1.9E-05 38.8 7.7 74 452-529 11-88 (88)
87 1wf9_A NPL4 family protein; be 91.6 0.22 7.7E-06 42.4 5.2 74 452-527 8-92 (107)
88 1se9_A Ubiquitin family; ubiqu 91.3 1.2 4E-05 40.0 9.7 66 449-519 14-87 (126)
89 3ai5_A Yeast enhanced green fl 90.8 0.69 2.3E-05 47.0 8.7 72 449-526 231-302 (307)
90 1oqy_A HHR23A, UV excision rep 90.8 0.46 1.6E-05 49.3 7.5 69 450-524 6-77 (368)
91 1v6e_A Cytoskeleton-associated 90.7 0.7 2.4E-05 38.3 7.2 77 451-528 7-86 (95)
92 2kc2_A Talin-1, F1; FERM, adhe 90.4 0.85 2.9E-05 41.1 7.9 74 453-527 13-120 (128)
93 1wgh_A Ubiquitin-like 3, HCG-1 90.2 1.8 6E-05 38.1 9.7 65 450-519 15-87 (116)
94 2daf_A FLJ35834 protein; hypot 90.1 1 3.6E-05 40.1 8.2 72 450-527 14-86 (118)
95 3u5e_m 60S ribosomal protein L 90.0 0.058 2E-06 47.3 0.0 68 453-526 2-69 (128)
96 1t0y_A Tubulin folding cofacto 88.0 2 6.8E-05 37.3 8.4 78 450-528 5-85 (122)
97 4b6w_A Tubulin-specific chaper 87.9 1.4 4.8E-05 36.4 7.0 73 451-527 2-81 (86)
98 3u5c_f 40S ribosomal protein S 86.3 0.14 4.7E-06 46.9 0.0 68 453-526 2-69 (152)
99 3kyd_D Small ubiquitin-related 86.2 2.3 7.9E-05 37.6 7.8 72 449-526 38-109 (115)
100 2fnj_B Transcription elongatio 83.6 1.8 6.1E-05 38.4 5.9 68 454-526 3-77 (118)
101 3pge_A SUMO-modified prolifera 83.1 3.4 0.00012 39.6 8.0 71 449-526 27-97 (200)
102 2dzm_A FAS-associated factor 1 82.8 4.4 0.00015 34.6 7.8 70 451-526 9-78 (100)
103 3shq_A UBLCP1; phosphatase, hy 81.7 2.6 8.9E-05 42.7 7.0 72 450-526 4-76 (320)
104 3tix_A Ubiquitin-like protein 80.7 3.8 0.00013 39.7 7.4 71 449-526 55-125 (207)
105 2daj_A KIAA0977 protein, COBL- 80.6 4.4 0.00015 34.6 6.8 66 450-518 9-75 (91)
106 4dbg_A Ranbp-type and C3HC4-ty 80.2 4.8 0.00017 34.9 7.2 73 449-526 20-96 (105)
107 2al3_A TUG long isoform; TUG U 79.5 5.2 0.00018 34.1 7.0 70 452-527 10-79 (90)
108 4a3p_A Ubiquitin carboxyl-term 78.1 4.1 0.00014 38.8 6.7 71 457-528 134-207 (217)
109 3jyu_A Ubiquitin carboxyl-term 78.1 5.2 0.00018 38.5 7.6 64 464-528 154-219 (231)
110 4ajy_B Transcription elongatio 77.2 3.9 0.00013 36.3 5.9 59 456-519 5-64 (118)
111 2jxx_A Nfatc2-interacting prot 75.0 16 0.00054 31.1 8.9 71 449-525 23-94 (97)
112 3ivf_A Talin-1; FERM domain, c 46.2 80 0.0027 31.6 9.4 69 450-518 84-157 (371)
113 1q0v_A Hydrophilic protein; ha 42.7 6.4 0.00022 33.1 0.6 20 186-205 6-25 (81)
114 2xzm_9 RPS31E; ribosome, trans 40.5 5.9 0.0002 37.7 0.0 56 453-513 2-57 (189)
115 3ivf_A Talin-1; FERM domain, c 32.4 1.5E+02 0.005 29.7 8.7 72 451-525 3-80 (371)
116 3a1q_C Ubiquitin interaction m 31.8 8.4 0.00029 28.7 -0.4 40 159-204 5-44 (45)
117 3qij_A Protein 4.1; cytoskelet 28.8 75 0.0025 31.1 5.8 46 450-495 16-62 (296)
118 2rr9_C Putative uncharacterize 28.3 7.7 0.00026 29.0 -1.1 39 160-204 3-41 (46)
119 3v7o_A Minor nucleoprotein VP3 28.1 12 0.00042 36.6 0.0 74 442-524 14-87 (227)
120 2l76_A Nfatc2-interacting prot 25.9 1.9E+02 0.0064 24.8 6.9 65 449-519 19-83 (95)
121 3oja_B Anopheles plasmodium-re 24.1 5.7E+02 0.019 26.6 11.8 13 433-445 574-586 (597)
122 3au4_A Myosin-X; protein-prote 21.2 1.6E+02 0.0055 31.2 7.0 47 450-496 215-263 (555)
123 3uf8_A Ubiquitin-like protein 20.9 2.4E+02 0.0082 26.4 7.4 53 441-496 13-65 (209)
124 4da1_A Protein phosphatase 1K, 20.1 22 0.00075 36.2 0.0 66 448-519 27-92 (389)
No 1
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.85 E-value=1.4e-21 Score=170.40 Aligned_cols=90 Identities=36% Similarity=0.571 Sum_probs=81.8
Q ss_pred HccCCCCCCCCCCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcC
Q 009661 437 EASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELG 516 (529)
Q Consensus 437 ~asLPpEP~a~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElG 516 (529)
...||+||..+..+.|+|+||||||+|++|||+.+++|++||+||++. ++.+..|.|+++||||+|.. |.++||+|+|
T Consensus 9 ~~~lp~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~-d~~~TL~e~g 86 (109)
T 2cr5_A 9 VPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEV-EGGSSLEDIG 86 (109)
T ss_dssp CCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCC-CSSCBHHHHT
T ss_pred cccCCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCC-CCCCCHHHcC
Confidence 468999999888899999999999999999999999999999999954 56788999999999999964 6799999999
Q ss_pred CCCCceeEEEeeC
Q 009661 517 LTSKQEALFLELV 529 (529)
Q Consensus 517 L~PsqaaL~VE~i 529 (529)
|+| +++|+|+.+
T Consensus 87 L~p-~a~L~Ve~~ 98 (109)
T 2cr5_A 87 ITV-DTVLNVEEK 98 (109)
T ss_dssp CSS-CEEEEEEEC
T ss_pred CCC-CeEEEEEeC
Confidence 998 599999864
No 2
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.80 E-value=1.4e-19 Score=158.12 Aligned_cols=85 Identities=22% Similarity=0.371 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCcee
Q 009661 444 PAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEA 523 (529)
Q Consensus 444 P~a~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~Psqaa 523 (529)
|..+..+.|+|+||||||+|+++||+.++||++||+||+++.+.....|.|+++||||+|+.+|.++||+|+||+| +++
T Consensus 6 p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~p-sa~ 84 (109)
T 2dzk_A 6 SGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAP-SAS 84 (109)
T ss_dssp CCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSS-EEE
T ss_pred CCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCC-ceE
Confidence 4445568899999999999999999999999999999998766667899999999999999877899999999998 499
Q ss_pred EEEeeC
Q 009661 524 LFLELV 529 (529)
Q Consensus 524 L~VE~i 529 (529)
|+|+++
T Consensus 85 L~v~~~ 90 (109)
T 2dzk_A 85 VVLLPA 90 (109)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999864
No 3
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.80 E-value=1.8e-19 Score=149.57 Aligned_cols=79 Identities=39% Similarity=0.622 Sum_probs=72.6
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 448 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 448 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
..++|+|+||||||++++|||+.+++|++||+||++ .+.....|.|+++||||.|+..|.++||+|+||.| +++|+||
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p-~a~L~ve 81 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP-QETLFLE 81 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCS-EEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC-CCEEEEE
Confidence 357899999999999999999999999999999996 56678899999999999998667899999999998 5999998
Q ss_pred e
Q 009661 528 L 528 (529)
Q Consensus 528 ~ 528 (529)
.
T Consensus 82 ~ 82 (84)
T 3qx1_A 82 A 82 (84)
T ss_dssp E
T ss_pred e
Confidence 5
No 4
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.77 E-value=8.6e-19 Score=156.60 Aligned_cols=83 Identities=28% Similarity=0.467 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeE
Q 009661 445 APDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEAL 524 (529)
Q Consensus 445 ~a~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL 524 (529)
..+..+.|+|+||||||+|++|||+.++||++||+||++. ++.+..|.|+++||||+|...|.++||+|+||+| +++|
T Consensus 37 ~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p-sa~L 114 (124)
T 1wj4_A 37 IDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCP-QETV 114 (124)
T ss_dssp CCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCS-SBCC
T ss_pred cCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCC-ceEE
Confidence 3345689999999999999999999999999999999976 6777899999999999998767899999999998 5999
Q ss_pred EEeeC
Q 009661 525 FLELV 529 (529)
Q Consensus 525 ~VE~i 529 (529)
+|+.+
T Consensus 115 iv~~~ 119 (124)
T 1wj4_A 115 FVQES 119 (124)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99864
No 5
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.63 E-value=4.2e-16 Score=139.50 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=66.8
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCC-CCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRG-IKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~-~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
.+.|+|+||||||+|+++||+.++||++||+||+++.. .....|.|+++||||+|++ .++||+|+||.| ++|++.
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d--~~~TL~eagL~p--savl~k 125 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELAD--ENQTLKEANLLN--AVIVQR 125 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCS--TTCBHHHHTCSS--CEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCC--CCCcHHHCCCcC--ceEEEE
Confidence 56899999999999999999999999999999997643 4567999999999999984 589999999997 466665
Q ss_pred e
Q 009661 528 L 528 (529)
Q Consensus 528 ~ 528 (529)
+
T Consensus 126 ~ 126 (127)
T 1s3s_G 126 L 126 (127)
T ss_dssp E
T ss_pred e
Confidence 4
No 6
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.50 E-value=1e-07 Score=78.65 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=63.8
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
+|+||+++|+.+...|..++||.+|..+|....+..+..++|..+||.+.+...+.++||.++||.+ +++|+|.
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~-g~~l~v~ 75 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQS-GDMLIVE 75 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCT-TCEEECC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCC-CCEEEEE
Confidence 5899999998776559999999999999998778878899999999999886433578999999997 5888885
No 7
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.22 E-value=0.00029 Score=58.11 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=59.1
Q ss_pred EEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCC-cccCCCCcccchhhcCCCCCceeEEEeeC
Q 009661 452 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPR-RAFSDGESALTLNELGLTSKQEALFLELV 529 (529)
Q Consensus 452 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPR-Rvft~eD~s~TLeElGL~PsqaaL~VE~i 529 (529)
..|+||-++|...+. ...++|+.+|++.|....+.....|.|...||. ..+.. ..+.||.++||.. +.+|+|+++
T Consensus 5 m~lRvrs~~G~~Ri~-v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~-~~~~~l~~lgl~h-Gd~l~l~~~ 80 (80)
T 2pjh_A 5 IIIRVQSPDGVKRIT-ATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITA-SSSKSLHLLKIKH-GDLLFLFPS 80 (80)
T ss_dssp CCCEEECSSEEEECC-CCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSS-CCCCTTTTTCCCT-TCCEEC---
T ss_pred EEEEEECCCCCEEEE-cCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccC-CCCCCHHHcCCCC-CCEEEEecC
Confidence 569999999986554 788999999999998766666778889888887 55543 2588999999986 699999763
No 8
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.17 E-value=0.0013 Score=56.14 Aligned_cols=81 Identities=16% Similarity=0.299 Sum_probs=61.7
Q ss_pred CCCCCCCCCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCC
Q 009661 441 PQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSK 520 (529)
Q Consensus 441 PpEP~a~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~Ps 520 (529)
++||.........|.||..+|+.+.-.+..++||.+|...|....+..+...+|+. --+.|.+ +.||.++|+..
T Consensus 13 ~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~ygI~~- 86 (106)
T 1ttn_A 13 IPEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF--SGRPLTD---KMKFEELKIPK- 86 (106)
T ss_dssp --------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE--TTEECCT---TSHHHHCCCSS-
T ss_pred CCCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE--CCEECCC---CCcHHHcCCCC-
Confidence 35666666677999999999999999999999999999999887788888888884 4566653 68999999986
Q ss_pred ceeEEEe
Q 009661 521 QEALFLE 527 (529)
Q Consensus 521 qaaL~VE 527 (529)
+.+|+|-
T Consensus 87 g~ti~lv 93 (106)
T 1ttn_A 87 DYVVQVI 93 (106)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 5777663
No 9
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.007 Score=47.75 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=59.9
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
....+|.||..+|+.+.-.+..++|+.+|...|....+..+...+|+. .-+.+.+ +.||.++|+.+ +.+|+|
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~--~gk~L~d---~~tL~~~~i~~-g~~i~l 76 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF--KGKALAD---GKRLSDYSIGP-NSKLNL 76 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE--TTEECCT---TSBGGGGTCCS-SBCCEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE--CCeECCC---CCcHHHcCCCC-CCEEEE
Confidence 356889999999998888999999999999999887788888888874 4666653 68999999986 566665
No 10
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.80 E-value=0.0045 Score=53.53 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=63.5
Q ss_pred CCCcEEEEEECCC----CCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCcee
Q 009661 448 DENAVTLLVRMPD----GSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEA 523 (529)
Q Consensus 448 ~~~~vrIqIRLPD----GsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~Psqaa 523 (529)
..+.++|.||+++ |+++.-.+..++|+.+|-.-|....+..+...+|+ |=-|+|.+ +.||.+.||.+ +++
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI--~~GKiL~D---~~TL~~y~I~~-gst 85 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIV--INKKQLQL---GKTLEEQGVAH-NVK 85 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE--ETTEECCT---TSBHHHHTCCS-SEE
T ss_pred hcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE--eCCeECCC---CCcHHHcCCCC-CCE
Confidence 4588999999999 77899999999999999999998888889999998 55888864 68999999997 576
Q ss_pred EEE
Q 009661 524 LFL 526 (529)
Q Consensus 524 L~V 526 (529)
|+|
T Consensus 86 i~v 88 (100)
T 1wju_A 86 AMV 88 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 11
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=96.77 E-value=0.0053 Score=47.51 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=57.6
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
+|.||.++|+.+.-.+..++|+.+|..-|....+..+...+|+ |--+.+.+ +.||.++|+.+ +.+|+|-
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~tL~~~~i~~-g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI--YSGKQMND---EKTAADYKILG-GSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBGGGGTCCT-TCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE--ECCEECCC---CCcHHHcCCCC-CCEEEEE
Confidence 6889999999999999999999999999987777788888887 44666653 68999999997 5777663
No 12
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.70 E-value=0.0062 Score=48.37 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=60.1
Q ss_pred cEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 451 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 451 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
...|.||..+|+.+.-.+..++|+.+|..-|....+..+...+|+ |.-+.|.+ +.||.++|+.+ ..+|+|-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~--~~g~~L~d---~~tL~~~~i~~-~~~l~l~ 73 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-WSTLFLL 73 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCT---TSBTGGGTCCT-TCEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE--ECCEECCC---CCCHHHcCCCC-CCEEEEE
Confidence 368999999999999999999999999999987777888888998 55677764 68999999986 5777663
No 13
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=96.65 E-value=0.0063 Score=47.07 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=57.4
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
+|.||.++|+.+.-.+..++|+.+|...|....+..+...+|+. .-+.+.+ +.||.++|+.+ +.+|+|-
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d---~~tL~~~~i~~-g~~i~l~ 70 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQR-ESTLHLV 70 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCT---TCBTGGGTCCT-TCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE--CCeECCC---CCcHHHcCCCC-CCEEEEE
Confidence 58899999999999999999999999999877777888888884 4566653 68999999996 5777653
No 14
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.57 E-value=0.011 Score=48.36 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=60.6
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
.....|.||..+|+.+.-.+..++|+.+|...|....+..+...+|+. --+.+.+ +.||.++|+.. +.+|+|-
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~--~Gk~L~D---~~tL~~~gi~~-g~~i~l~ 87 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQK-ESTLHLV 87 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCT---TCBTGGGTCCT-TCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE--CCeECCC---cCcHHHCCCCC-CCEEEEE
Confidence 467899999999999999999999999999999887788888888884 3455653 68999999996 5777663
No 15
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.52 E-value=0.012 Score=47.26 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=60.5
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
...+|.||..+|+.+.-.+..++|+.+|...|....+..+...+|+ |--+.+.+ +.||.++|+.. +.+|+|-
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~--~~Gk~L~d---~~tL~~~~i~~-g~~i~l~ 77 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE--FQGQVLQD---WLGLGIYGIQD-SDTLILS 77 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE--ETTEECCS---SSBHHHHTCCT-TEEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE--ECCEEccC---CCCHHHCCCCC-CCEEEEE
Confidence 4688999999999999999999999999999988888888889998 44566653 68999999986 5777663
No 16
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.52 E-value=0.0084 Score=46.84 Aligned_cols=69 Identities=13% Similarity=0.277 Sum_probs=57.8
Q ss_pred EEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 452 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 452 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
.+|.||. +|+.+.-.+..++|+.+|...|....+..+...+|+ |.-+.+.+ +.||.++|+.+ +.+|+|-
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~--~~gk~L~d---~~tL~~~~i~~-g~~i~l~ 73 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI--YSGKILKD---DQTVESYHIQD-GHSVHLV 73 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTGGGTCCT-TCEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE--ECCeEcCC---CCCHHHcCCCC-CCEEEEE
Confidence 6788898 999888999999999999999987777888888888 55677654 58999999996 5777764
No 17
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=96.46 E-value=0.011 Score=49.11 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=57.9
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
+|.||.++|+.+.-.+..++|+.+|...|....+..+...+|+. --+.|.+ +.||.++|+.+ +++|+|-
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~--~Gk~L~D---~~tL~~~gi~~-g~~i~l~ 70 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQK-ESTLHLV 70 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE--TTEECCT---TSBTGGGTCCT-TCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE--CCEECCC---CCCHHHcCCCC-CCEEEEE
Confidence 68899999999989999999999999999888888888888884 4566653 68999999996 5777653
No 18
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.43 E-value=0.013 Score=47.99 Aligned_cols=71 Identities=20% Similarity=0.379 Sum_probs=59.6
Q ss_pred cEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 451 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 451 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
...|.||..+|+.+.-.+..++|+.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.. +.+|+|-
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D---~~tL~~~~I~~-g~~i~l~ 74 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT--FEGKPLED---QLPLGEYGLKP-LSTVFMN 74 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE--SSSSCCCT---TSBHHHHHCST-TCEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE--ECCEECCC---CCcHHHcCCCC-CCEEEEE
Confidence 478999999999999999999999999999998888888888998 44566653 68999999986 5777653
No 19
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.41 E-value=0.015 Score=46.66 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=60.4
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 448 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 448 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
......|.||..+|+.+.-.+..++|+.+|..-|....+..+...+|+. --+.|.+ +.||.++|+.+ +.+|+|
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~--~G~~L~d---~~tL~~~~i~~-~~~i~l 81 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY--SGKQMND---EKTAADYKILG-GSVLHL 81 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE--TTEECCT---TSBGGGGTCCT-TCEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE--CCeECCC---CCcHHHcCCCC-CCEEEE
Confidence 3467899999999999999999999999999999877777788888874 3455553 78999999996 577766
No 20
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.33 E-value=0.016 Score=48.31 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=63.7
Q ss_pred CCcEEEEEECC---CCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcC---CCCcccCCCCcccchhhcCCCCCce
Q 009661 449 ENAVTLLVRMP---DGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP---YPRRAFSDGESALTLNELGLTSKQE 522 (529)
Q Consensus 449 ~~~vrIqIRLP---DGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~---fPRRvft~eD~s~TLeElGL~Psqa 522 (529)
.+.++|.|+.+ +|..+.++|..+.||..|..-|....+..+...+|.-. +|.......+...||...|+.+ +.
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~-G~ 85 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN-GD 85 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT-TC
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCC-CC
Confidence 46789999975 68889999999999999999998777778888888743 6655554445689999999997 68
Q ss_pred eEEEee
Q 009661 523 ALFLEL 528 (529)
Q Consensus 523 aL~VE~ 528 (529)
.|+|..
T Consensus 86 ~I~V~d 91 (97)
T 1wjn_A 86 CLLVRW 91 (97)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 888864
No 21
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.24 E-value=0.024 Score=45.24 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=59.1
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhc---CCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVG---RGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~---~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...+|.||..+|+.+.-.+..++|+.+|...|... .+..+...+|+. --+.|.+ +.||.++|+.. +.+|+|
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~~~i~~-g~~i~l 77 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKILSD---DVPIRDYRIDE-KNFVVV 77 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE--TTEECCT---TSBGGGGCCCT-TSEEEE
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE--CCEECcC---CCCHHHcCCCC-CCEEEE
Confidence 45789999999999999999999999999999864 567788888874 4566653 68999999986 577766
Q ss_pred e
Q 009661 527 E 527 (529)
Q Consensus 527 E 527 (529)
-
T Consensus 78 ~ 78 (85)
T 2wyq_A 78 M 78 (85)
T ss_dssp E
T ss_pred E
Confidence 3
No 22
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.21 E-value=0.022 Score=45.03 Aligned_cols=71 Identities=20% Similarity=0.340 Sum_probs=59.1
Q ss_pred cEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 451 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 451 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
...|.||.++|+.+.-.+..++|+.+|..-|....+..+...+|+. --+.+.+ +.||.++|+.+ +.+|+|-
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~--~G~~L~d---~~tL~~~~i~~-~~~l~l~ 74 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF--EGKPLED---QLPLGEYGLKP-LSTVFMN 74 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBGGGGTCCT-TCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE--CCEECCC---CCcHHHCCCCC-CCEEEEE
Confidence 4689999999999888999999999999999877788888888884 3466653 68999999997 5777653
No 23
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.014 Score=48.77 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=59.5
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
....+|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.+ +.+|+|
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~~~i~~-g~~i~l 91 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 91 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCT---TCBSGGGTCCT-TEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE--ECCEECCC---CCcHHHCCCCC-CCEEEE
Confidence 45689999999999999999999999999999988777888888888 44566653 68999999996 577665
No 24
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.14 E-value=0.017 Score=47.41 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=58.4
Q ss_pred EEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 452 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 452 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
..|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.+ +.+|+|-
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~--~~G~~L~d---~~tL~~~~i~~-~~~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHLV 71 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTGGGTCCT-TCEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE--ECCEECCC---CCcHHHcCCCC-CCEEEEE
Confidence 46889999999998899999999999999988778888888888 45566654 67999999986 5777663
No 25
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.09 E-value=0.027 Score=46.78 Aligned_cols=69 Identities=10% Similarity=0.191 Sum_probs=57.0
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhc---CCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVG---RGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~---~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
+|.||..+|+.+.-.+..++||.+|...|... .+..+...+|+ |--+.|.+ +.||.++|+.+ +.+|+|-
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~ygI~~-g~~i~l~ 73 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI--YAGKILND---DTALKEYKIDE-KNFVVVM 73 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE--ETTEECCT---TSBGGGGTCCS-SSEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE--ECCEECCC---cCcHHHCCCCC-CCEEEEE
Confidence 58899999999999999999999999999876 56778888887 44677653 58999999986 5777653
No 26
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=96.06 E-value=0.027 Score=45.77 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=58.2
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...+|.||..+|+.+.-.+..++|+.+|...|....+..+...+|+. =-+.|.+ +.||.++|+ . +.+|+|
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~--~Gk~L~d---~~tL~~~~i-~-g~~i~l 73 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY--QGRVLQD---DKKLQEYNV-G-GKVIHL 73 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBGGGGTC-T-TEEEEE
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE--CCeECCC---CCCHHHcCC-C-CcEEEE
Confidence 56889999999999988999999999999999877778888888874 4566653 689999999 5 466665
No 27
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.04 E-value=0.017 Score=48.38 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=60.6
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...+.|.||..+|+.+.-....++||.+|...|....+..+...+|+- --+.|.+ +.||.++|+.. +.+|.|
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif--~Gk~L~d---~~tl~dy~i~~-g~~I~l 90 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF--EGQRIAD---NHTPKELGMEE-EDVIEV 90 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TCCHHHHTCCT-TCEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE--CCeEcCC---CCCHHHCCCCC-CCEEEE
Confidence 356899999999999999999999999999999887788888888874 4667764 68999999996 577665
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=95.99 E-value=0.02 Score=45.27 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=58.9
Q ss_pred cEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 451 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 451 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...|.||..+|+.+.-....++|+.+|...+....+..+...+|+ |--+.|.+ +.||.++|+.. +.+|.|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~--~~G~~L~d---~~tl~~~~i~~-~~~i~l 72 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL--FEGQRIAD---NHTPKELGMEE-EDVIEV 72 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TCCHHHHTCCT-TEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE--ECCEEeCC---CCCHHHcCCCC-CCEEEE
Confidence 468999999999999999999999999999987778888888886 45677764 68999999996 577665
No 29
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.97 E-value=0.023 Score=44.70 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=57.1
Q ss_pred cEEEEEECCCCCEE-EEE-ecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 451 AVTLLVRMPDGSRR-GRR-FLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 451 ~vrIqIRLPDGsRi-~RR-F~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...|.||..+|+.+ .-. +..++|+.+|..-|....+..+...+|+. --+.+.+ +.||.++|+.. +.+|+|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~--~g~~L~d---~~tL~~~~i~~-g~~i~l 73 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY--RGKQMED---GHTLFDYEVRL-NDTIQL 73 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCT---TCBTTTTTCCT-TCEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE--CCEECCC---CCCHHHcCCCC-CCEEEE
Confidence 46799999999875 667 99999999999999887788888888874 4566653 68999999986 577765
No 30
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.95 E-value=0.038 Score=46.17 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=59.7
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...+.|.||..+| .+.-.+..++||.+|...|....+..+...+|+ |.-+.|.+ ...||.++|+.+ +.+|+|
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D--~~~tL~~ygI~~-gstl~l 84 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY--YSGIELAD--DYRNLNEYGITE-FSEIVV 84 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE--ETTEEECC--TTSBHHHHTCCT-TEEEEE
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE--ECCEECCC--CcccHHHCCCCC-CCEEEE
Confidence 3568899999988 788899999999999999998888888888997 55777754 238999999996 577665
No 31
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.95 E-value=0.041 Score=44.41 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=58.7
Q ss_pred CCcEEEEEECCCC-CEEEE-EecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDG-SRRGR-RFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDG-sRi~R-RF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
.....|.||..+| +.+.- .+..++|+.+|...|....+..+...+|+. --+.+.+ +.||.++|+.. +.+|+|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~--~gk~L~d---~~tL~~~~i~~-g~~i~l 78 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY--RGKQLEN---GYTLFDYDVGL-NDIIQL 78 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE--TTEECCS---SSBHHHHTCCT-TCEEEE
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE--CCeECCC---CCCHHHCCCCC-CCEEEE
Confidence 3568899999999 67877 599999999999999888888888888884 3566653 68999999986 567665
No 32
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.92 E-value=0.041 Score=48.57 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=59.4
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
...++|.||.. |+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.. +.+|+|-
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~dygI~~-gstI~lv 101 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI--FAGKILKD---QDTLIQHGIHD-GLTVHLV 101 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE--ETTEEEST---TSCGGGTTCSS-SEEEEEE
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEEE
Confidence 45688999988 88899999999999999999987777788888887 44666653 68999999986 5777663
No 33
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.88 E-value=0.032 Score=46.01 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.||.. |+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.+ +.+|+|
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D---~~tL~~~gi~~-g~~i~l 85 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI--FTGKILRD---QDILSQRGILD-GSTVHV 85 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE--ETTEECCT---TSCHHHHTCCT-TEEEEC
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE--ECCEECCC---cCCHHHCCCCC-CCEEEE
Confidence 46788999998 99999999999999999999988777777777777 34566653 68999999996 577765
No 34
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.87 E-value=0.017 Score=45.84 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=58.3
Q ss_pred EEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 452 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 452 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
..|.||..+|+.+.-.+..++|+.+|...|....+..+...+|+. --+.|.+ +.||.++|+.+ +.+|+|-
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~--~g~~L~d---~~tL~~~~i~~-~~~i~l~ 73 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIHN-HSALYLL 73 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TBEECCT---TCBTTTTTCCT-TCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE--CCeECCC---CCCHHHCCCCC-CCEEEEE
Confidence 578999999999999999999999999999877778888888885 3455653 67999999996 5777663
No 35
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.74 E-value=0.051 Score=46.38 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=59.6
Q ss_pred CcEEEEEECC---CCCEEEEEecC-CCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEE
Q 009661 450 NAVTLLVRMP---DGSRRGRRFLK-SNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALF 525 (529)
Q Consensus 450 ~~vrIqIRLP---DGsRi~RRF~~-SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~ 525 (529)
+.++|.||++ +|+.+.-.+.. ++|+.+|..-|....+..+...+|+. --+.+.+ +.||.++|+.+ +.+|+
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~--~Gk~L~D---~~tL~~y~I~~-g~~l~ 99 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG--KAGFLKD---NMSLAHYNVGA-GEILT 99 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC--SSSBCCT---TSBTTTTTCSS-SCEEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE--CCEECCC---CCcHHHCCCCC-CCEEE
Confidence 4589999999 89989999998 99999999999988888888888884 3455543 68999999996 57776
Q ss_pred Ee
Q 009661 526 LE 527 (529)
Q Consensus 526 VE 527 (529)
|-
T Consensus 100 l~ 101 (111)
T 1we6_A 100 LS 101 (111)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 36
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=95.68 E-value=0.03 Score=45.84 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=58.3
Q ss_pred cEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 451 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 451 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...|.||..+|+.+.-.+..++|+.+|..-|....+..+...+|+ |--+.+.+ +.||.++|+.+ +.+|+|
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D---~~tL~~~gi~~-g~~i~l 78 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 78 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCT---TSBSGGGTCCT-TCEEEE
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE--ECCEECCC---CCcHHHcCCCC-CCEEEE
Confidence 357899999999999999999999999999988777888888887 44666653 68999999996 567665
No 37
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.67 E-value=0.047 Score=47.17 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
...+.|-|+...|+.+.-.+..++||.+|..-|....+..+..-+|+ |.-++|.+ +.||.+.|+.. ..+|.|.
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi--~~Gk~L~D---~~TL~dygI~~-gstlhL~ 98 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK--KWYTIFKD---HVSLGDYEIHD-GMNLELY 98 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCS---SCBHHHHTCCT-TEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE--ECCEECCC---CCCHHHcCCCC-CCEEEEE
Confidence 45689999999999999999999999999999998888888888998 55888864 68999999996 5777764
No 38
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.67 E-value=0.042 Score=46.43 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=58.5
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
...++|.||..+|+ +.-.+..++||.+|...|....+..+...+|+. --+.|.+ +.||.++|+.. +.+|+|-
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~~gi~~-g~~i~l~ 86 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF--AGKILKD---PDSLAQCGVRD-GLTVHLV 86 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE--TTEECCT---TSCHHHHTCCT-TEEEEEE
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE--CCEECCC---cCcHHHcCCCC-CCEEEEE
Confidence 45688999999885 778899999999999999877777788888874 4566653 68999999996 5777663
No 39
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.67 E-value=0.048 Score=44.94 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=56.4
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.||..+|+.+.-.+..++||.+|...|.... +...+|+ |--+.|.+ .+.||.++|+.. +.+|+|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi--~~Gk~L~D--~~~tL~~y~i~~-g~~i~l 74 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLI--YQGRLLQD--PARTLSSLNITN-NCVIHC 74 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEE--ETTEECCC--SSCBTTTTTCCT-TEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEE--ECCEEccC--CcCCHHHcCCCC-CCEEEE
Confidence 3568999999999999999999999999999997432 7788887 45666664 238999999986 577766
No 40
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.62 E-value=0.045 Score=46.23 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=58.2
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
..++|.||.. |+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.+ +.+|+|
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~~gI~~-g~~I~l 93 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI--FAGKILKD---QDTLSQHGIHD-GLTVHL 93 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE--ETTEEECT---TCCTGGGTCCT-TCEEEE
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE--ECCEECCC---cCcHHHcCCCC-CCEEEE
Confidence 4689999998 88888999999999999999987777888888887 44677753 68999999986 567665
No 41
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=95.57 E-value=0.049 Score=44.01 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=58.9
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
+...+|.||..+|+.+.-.+..++|+.+|...|....+..+...+|+. --+.|.+ +.||.++|+ + +.+|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~~~i-~-g~~i~l 85 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY--QGRVLQD---DKKLQEYNV-G-GKVIHL 85 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBGGGGTC-T-TEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE--CCEECCC---CCcHHHcCC-C-CcEEEE
Confidence 356899999999999888999999999999999877778888888873 4566654 689999999 5 577765
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=95.54 E-value=0.044 Score=47.06 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=59.8
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
....|.||..+|+.+.-++..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.+ +.+|+|
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~~gI~~-gs~I~l 104 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 104 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTTTTTCCT-TCEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE--ECCEECCC---CCcHHHCCCCC-CCEEEE
Confidence 3588999999999999999999999999999988777888888888 45566664 67999999986 567665
No 43
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=95.51 E-value=0.056 Score=46.22 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=59.8
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
...+|.||..+|+.+.-.+..++|+.+|..-|....+..+...+|+. --+.|.+ +.||.++|+.. +.+|+|-
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~~gI~~-gs~I~l~ 105 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQK-ESTLHLV 105 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE--TTEECCS---SCBTTTTTCCT-TCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE--CCEECCC---CCcHHHcCCCC-CCEEEEE
Confidence 46899999999999989999999999999999877778888888874 3566643 68999999996 5777663
No 44
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=95.49 E-value=0.045 Score=47.09 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=59.2
Q ss_pred CcEEEEEECCC----------CCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 009661 450 NAVTLLVRMPD----------GSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS 519 (529)
Q Consensus 450 ~~vrIqIRLPD----------GsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~P 519 (529)
+.++|.|++|+ |+.+.-.+..++||.+|..-|....+..+...+|+. --+.|.+ +.||.++|+.+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~--~Gk~L~D---~~tL~~y~i~~ 98 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY--EGIFIKD---SNSLAYYNMAS 98 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE--TTEEECT---TSBHHHHTCCS
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE--CCEECCC---CCCHHHCCCCC
Confidence 46899999996 677888999999999999999988888888888884 4566653 68999999986
Q ss_pred CceeEEEe
Q 009661 520 KQEALFLE 527 (529)
Q Consensus 520 sqaaL~VE 527 (529)
+.+|+|-
T Consensus 99 -g~~i~lv 105 (115)
T 1we7_A 99 -GAVIHLA 105 (115)
T ss_dssp -SCEEEEE
T ss_pred -CCEEEEE
Confidence 5777653
No 45
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.42 E-value=0.05 Score=47.42 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=58.2
Q ss_pred cEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 451 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 451 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...|.|+..+|+.+...+..++|+.+|..-|....+..+...+|+ |..+.+.+ +.||.++|+.+ +.+|+|
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~--~~g~~L~d---~~tL~~~~i~~-~~~i~l 145 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 145 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTGGGTCCT-TCEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE--ECCEECCC---CCCHHHcCCCC-CCEEEE
Confidence 357778888898999999999999999999987777888899998 55677753 68999999986 577665
No 46
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.38 E-value=0.041 Score=45.03 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=59.5
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcc-cCCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRA-FSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRv-ft~eD~s~TLeElGL~PsqaaL~V 526 (529)
.-.+|-||..+|+.+.-.+..++|+.+|..-|....+..+...+|+ |--+. +.+ +.||.++|+.+ +.+|+|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~lL~D---~~tL~~y~I~~-gs~i~l 80 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI--VDGIVILRE---DLTVEQCQIVP-TSDIQL 80 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCCS---SSBHHHHTCCT-TSCEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE--ECCEEecCC---cCCHHHcCCCC-CCEEEE
Confidence 3568999999999999999999999999999998888888888888 44566 543 68999999986 566665
No 47
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.042 Score=46.77 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=57.0
Q ss_pred EEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 452 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 452 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
.+|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.. +.+|+|
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~~~i~~-g~~i~l 70 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLI--YSGKVLQD---SKTVSECGLKD-GDQVVF 70 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEE--ETTEECCT---TSBTTTTTCCT-TCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE--ECCEECCC---cCCHHHcCCCC-CCEEEE
Confidence 46889999999998899999999999999988777778888887 34566654 68999999996 567665
No 48
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=95.29 E-value=0.049 Score=44.53 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=56.6
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
.|.||..+|+.+.-.+..++|+.+|...|....+..+...+|+. =-+.|.+ +.||.++|+.+ +.+|+|
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~~~i~~-g~~l~l 69 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY--SGKQMND---EKTAADYKILG-GSVLHL 69 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCT---TSBTTTTTCCT-TCEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE--CCeECCC---CCcHHHcCCCC-CCEEEE
Confidence 58899999999999999999999999999877778888888874 3466653 78999999996 577665
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.26 E-value=0.06 Score=45.45 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=58.2
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.||..+|+ +.-.+..++||.+|...|....+..+...+|+. --+.|.+ +.||.++|+.. +.+|+|
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D---~~tL~~ygI~~-gstI~l 90 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF--AGKILKD---PDSLAQCGVRD-GLTVHL 90 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBHHHHTCCT-TCEEEE
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE--CCEECCC---cCcHHHCCCCC-CCEEEE
Confidence 46789999999996 678999999999999999877777788888874 4566653 68999999986 566665
No 50
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.83 E-value=0.077 Score=46.24 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=57.0
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
+|.||.++|+.+.-.+..++|+.+|..-|....+..+...+|+- .-+.+.+ +.||.++|+.+ +..|+|-
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~--~g~~L~d---~~tL~~~~i~~-~~~l~l~ 70 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQK-ESTLHLV 70 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCT---TSBTGGGTCCT-TCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE--CCeECcC---cccHHHhccCC-CCeeEEE
Confidence 58899999999999999999999999999877778888888874 3566643 68999999996 5777653
No 51
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.08 Score=45.76 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=60.2
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
+...|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+. --+.|.+ +.||.++|+.+ +.+|+|-
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~ygI~~-gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW--AGKQLED---GRTLSDYNIQR-ESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCT---TCBTTTTTCCS-SCEEEEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE--CCEECCC---CCcHHHCCCCC-CCEEEEE
Confidence 45789999999999999999999999999999887788888888874 4566653 68999999986 5777653
No 52
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.78 E-value=0.094 Score=43.76 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=57.4
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 448 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 448 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
....++|.|++ +|+.+.-.+..++||.+|..-|....+..+..-+|+ |.-+.+ + | .||.++||.+ +..|+|
T Consensus 14 ~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~--~~Gk~L-d-d--~tL~~~~i~~-g~~i~l 84 (95)
T 1v86_A 14 GKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM--YKGLVP-E-D--KTLREIKVTS-GAKIMV 84 (95)
T ss_dssp CCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB--SSSBCC-S-S--SBHHHHCCCT-TEEEEE
T ss_pred CCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCeeC-C-c--CcHHHCCCCC-CCEEEE
Confidence 34678899996 688888899999999999999988777878888887 666776 2 2 3999999986 566665
No 53
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=94.69 E-value=0.093 Score=44.36 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=61.4
Q ss_pred CCcEEEEEECCCCC--EEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCccc-CCCCcccchhhcCCCCCceeEE
Q 009661 449 ENAVTLLVRMPDGS--RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAF-SDGESALTLNELGLTSKQEALF 525 (529)
Q Consensus 449 ~~~vrIqIRLPDGs--Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvf-t~eD~s~TLeElGL~PsqaaL~ 525 (529)
.+.++|.|+..+++ .+.++|..++||..|-.-|....+..+..-+|+-..+.+.+ ...+.++||.+.|+.+ ..+|+
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~-gstih 91 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSD-GLRLH 91 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSS-SCEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCC-CCEEE
Confidence 47889999998875 79999999999999999999888888888888854332321 1113479999999996 68887
Q ss_pred Ee
Q 009661 526 LE 527 (529)
Q Consensus 526 VE 527 (529)
|.
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 54
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=94.67 E-value=0.09 Score=47.75 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=59.6
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 448 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 448 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
......|.||..+|+.+.-....++||.+|..-|....+..+...+|+ |--+.|.+ +.||.++|+.+ +.+|+|
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~--~~g~~L~d---~~tL~~~~i~~-~~~l~l 89 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 89 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TCBTGGGTCCT-TCEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE--ECCccccc---cCCHhHcCCcc-cceeee
Confidence 345689999999999999999999999999999988778888888888 34566654 68999999996 466665
No 55
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.67 E-value=0.21 Score=40.80 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=58.7
Q ss_pred CCcEEEEEECCCCCEEEEEecCC-----CcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCcee
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKS-----NKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEA 523 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~S-----DTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~Psqaa 523 (529)
...++|.|+. .|+.+.-.|..+ +||.+|..-|....+..+..-+|+ |--+.|.+ .++||.++|+.+ +..
T Consensus 5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~--~~Gk~L~D--~~~~L~~~~i~~-g~~ 78 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI--FKGKSLKE--METPLSALGIQD-GCR 78 (92)
T ss_dssp CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE--ETTEEECC--SSSBHHHHTCCS-SEE
T ss_pred CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE--ECCeecCC--CcccHHHCCCCC-CCE
Confidence 3568899998 577888899985 999999999988888888888887 44666754 367999999986 577
Q ss_pred EEEe
Q 009661 524 LFLE 527 (529)
Q Consensus 524 L~VE 527 (529)
|+|-
T Consensus 79 i~l~ 82 (92)
T 1wxv_A 79 VMLI 82 (92)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 56
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=94.63 E-value=0.14 Score=43.56 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=56.8
Q ss_pred CCcEEEEEECCCCCEEEE--EecCCCcHHHHHHHH-HhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCC-CCCceeE
Q 009661 449 ENAVTLLVRMPDGSRRGR--RFLKSNKLQSLFDYI-DVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGL-TSKQEAL 524 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~R--RF~~SDTLqdLydFV-d~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL-~PsqaaL 524 (529)
...+.|-||..+|+.+.- .+..++|+.+|-..| ....+..+...+|+ |--+.|.+ +.||.++|+ .+ +.+|
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi--~~Gk~L~D---~~tL~dy~I~~~-g~ti 90 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL--LKGKVLHD---NLFLSDLKVTPA-NSTI 90 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEE--ETTEEECT---TCBGGGSCCBTT-BCEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEE--ECCEECcC---cCCHHHcCcCCC-CCEE
Confidence 466899999999987555 566999999999999 76667778888998 44677764 689999999 75 4565
Q ss_pred EE
Q 009661 525 FL 526 (529)
Q Consensus 525 ~V 526 (529)
+|
T Consensus 91 ~l 92 (98)
T 4a20_A 91 TV 92 (98)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 57
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.51 E-value=0.094 Score=42.81 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=55.5
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
..+.+.+.+ +|+.+.-.+..++|+.+|...|....+..+...+|+ |-.+.|.+ +.||.++|+.+ +.+|+|
T Consensus 11 ~~~~~~~~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D---~~tL~~~gi~~-g~~l~l 80 (85)
T 2kd0_A 11 STIKLTVKF-GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI--FKGKVLVE---TSTLKQSDVGS-GAKLML 80 (85)
T ss_dssp CCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE--ETTEECCT---TCBTTTTTCCT-TEEEEE
T ss_pred CcEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE--ECCeECCC---cCCHHHCCCCC-CCEEEE
Confidence 344555554 888888899999999999999987777888888888 55666653 68999999996 577765
No 58
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=94.34 E-value=0.045 Score=46.06 Aligned_cols=55 Identities=42% Similarity=0.470 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhHHHHhhccC-CC--CC---------CCCCCCccchhhhhhhhhhhHHHHHHHHHH
Q 009661 160 EEEMIRAAIEASKQEAENVSG-AG--TE---------HRQPHLEDVDLAHAVSLSLRTAEQEKAQRE 214 (529)
Q Consensus 160 eeemiraaieask~~~~~~~~-~~--~~---------~~~~~~ed~d~a~avslsl~~~~~~~~~~~ 214 (529)
|+|-||-|||.|-+|..+... .+ ++ ......||+||..||-.||+..|+.|-.+.
T Consensus 11 eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASLrd~E~qK~~~~ 77 (81)
T 1q0v_A 11 EEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESLREAEEAKLRSE 77 (81)
T ss_dssp HHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999765521 11 11 112356788999999999999998876543
No 59
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.31 E-value=0.21 Score=40.93 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=56.1
Q ss_pred CcEEEEEECCCCC--EEEEEecCCCcHHHHHHHHHhcC--CCCCcCeEEEcCCCCcccCCCCcccchhhc--CCCCCcee
Q 009661 450 NAVTLLVRMPDGS--RRGRRFLKSNKLQSLFDYIDVGR--GIKAGTYRLVRPYPRRAFSDGESALTLNEL--GLTSKQEA 523 (529)
Q Consensus 450 ~~vrIqIRLPDGs--Ri~RRF~~SDTLqdLydFVd~~~--~~~p~~F~LvT~fPRRvft~eD~s~TLeEl--GL~Psqaa 523 (529)
..++|.||.++|+ .+.-.+..++|+.+|..-|.... +..+...+|+ |--+.|.+ +.||.++ ++.. ..+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi--~~Gk~L~D---~~tL~~~~~~i~~-~~~ 79 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI--YSGKLLLD---HQCLRDLLPKQEK-RHV 79 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE--ETTEECCS---SSCHHHHSCSSSC-SEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE--ECCEECcC---cCCHHHHhcCCCC-CCE
Confidence 4589999999998 34444559999999999998765 7778888998 55777764 5799999 9986 566
Q ss_pred EEE
Q 009661 524 LFL 526 (529)
Q Consensus 524 L~V 526 (529)
|+|
T Consensus 80 i~l 82 (93)
T 1wgd_A 80 LHL 82 (93)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 60
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=94.20 E-value=0.17 Score=43.31 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=61.4
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
+..+.|-|+.+.|+++.-.+.++|||.+|..-|....+.++..-+|+- --+.|.+ ..||.+.++.. ..+|.+
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif--~Gk~LkD---~~TL~dY~I~d-gstLhL 90 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK--GGSVLKD---HISLEDYEVHD-QTNLEL 90 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBTGGGTCCT-TCEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe--CCEEccC---cCCHHHcCCCC-CCEEEE
Confidence 356899999999999999999999999999999888888899999974 4466664 68999999997 577765
No 61
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.04 E-value=0.13 Score=42.56 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=55.1
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
....|.||. |+.+.-.+..++|+.+|...|....+..+...+|+. --+.|.+ +.||.++|+.+ +.+|.|
T Consensus 18 ~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~y~I~~-gstI~l 86 (93)
T 2l7r_A 18 GSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL--AGAPLED---EATLGQCGVEA-LTTLEV 86 (93)
T ss_dssp --CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE--TTEECCT---TSBHHHHTCCS-SCEEEE
T ss_pred CcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE--CCEECCC---CCcHHHCCCCC-CCEEEE
Confidence 346788887 888888999999999999999887778888888874 4566653 68999999986 577665
No 62
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.94 E-value=0.16 Score=45.17 Aligned_cols=70 Identities=24% Similarity=0.228 Sum_probs=58.1
Q ss_pred EEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCC-CCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 452 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPY-PRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 452 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~f-PRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
..|.||..+|+.+.-.+..++|+.+|-.-|....+..+..-+|+. | ..+.|.+ +.||.++|+.+ +.+|+|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~-~~~g~~L~d---~~tL~~y~i~~-~~~l~l 73 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAV-HPSGVALQD---RVPLASQGLGP-GSTVLL 73 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEE-ETTCCBCCT---TSCGGGGTCCT-TCEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE-cCCCCCCCC---CCCHHHcCCCC-CCEEEE
Confidence 468899889999999999999999999999887788888888883 5 3566643 78999999997 466665
No 63
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=92.98 E-value=0.01 Score=46.47 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=54.1
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
.|.||.++|+.+.-.+..++|+.+|...|....+..+...+|+ |--+.+.+ +.||.++|+.+ +.+|+|
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~--~~gk~L~d---~~tL~~~~i~~-g~~i~l 69 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI--FAGKELPN---HLTVQNCDLEQ-QSIVHI 69 (76)
Confidence 4778999999888899999999999999987667777777776 44566643 68999999986 466654
No 64
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.84 E-value=0.26 Score=41.43 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=58.1
Q ss_pred CcEEEEEECCCC----CEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEE
Q 009661 450 NAVTLLVRMPDG----SRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALF 525 (529)
Q Consensus 450 ~~vrIqIRLPDG----sRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~ 525 (529)
...+|.||.++| +.+.-.+..++||.+|...|....+..+...+|+. --+.|.+ ...||.++|+.. +.+|+
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~--~gk~L~D--~~~tL~~ygI~~-g~~l~ 80 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY--MEQLLTD--DHCSLGSYGLKD-GDMVV 80 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE--TTEEECC--SSSBHHHHTCCT-TEEEE
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE--CCEECCC--CcccHHHCCCCC-CCEEE
Confidence 457888998865 57778899999999999999988888888888874 3466653 357999999996 57777
Q ss_pred Ee
Q 009661 526 LE 527 (529)
Q Consensus 526 VE 527 (529)
|-
T Consensus 81 l~ 82 (102)
T 1v5o_A 81 LL 82 (102)
T ss_dssp EC
T ss_pred EE
Confidence 64
No 65
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.80 E-value=0.18 Score=42.89 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=56.7
Q ss_pred CcEEEEEECCCC---CEEEEEecC---------CCcHHHHHHHHHhcC--CCCCcC-eEEEcCCCCcccCCCCcccchhh
Q 009661 450 NAVTLLVRMPDG---SRRGRRFLK---------SNKLQSLFDYIDVGR--GIKAGT-YRLVRPYPRRAFSDGESALTLNE 514 (529)
Q Consensus 450 ~~vrIqIRLPDG---sRi~RRF~~---------SDTLqdLydFVd~~~--~~~p~~-F~LvT~fPRRvft~eD~s~TLeE 514 (529)
..++|.||..+| ..+.-.|.. ++||.+|...|.... +..+.. .+|+ |--+.|.+ +.||.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi--~~Gk~L~D---~~tL~~ 85 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLI--YCGRKLKD---DQTLDF 85 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEE--ETTEECCT---TCBHHH
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEE--ECCeECCC---CCcHHH
Confidence 457899999999 777777665 599999999998877 777888 8887 55677753 589999
Q ss_pred cCCCCCceeEEE
Q 009661 515 LGLTSKQEALFL 526 (529)
Q Consensus 515 lGL~PsqaaL~V 526 (529)
+|+.. +.+|+|
T Consensus 86 y~i~~-g~~i~l 96 (107)
T 1x1m_A 86 YGIQP-GSTVHV 96 (107)
T ss_dssp HTCCT-TCEEEE
T ss_pred cCCCC-CCEEEE
Confidence 99986 566665
No 66
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.76 E-value=0.24 Score=44.03 Aligned_cols=72 Identities=19% Similarity=0.340 Sum_probs=58.6
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
+...|.||..+|+.+.-.+..++|+.+|..-|....+..+...+|+. --+.+.+ +.||.++|+.. +.+|+|-
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L~d---~~tL~~y~i~~-g~~l~l~ 151 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF--EGKPLED---QLPLGEYGLKP-LSTVFMN 151 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBGGGGTCCT-TCEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE--CCeecCC---CCCHHHcCCCC-CCEEEEE
Confidence 34567778889999888999999999999999877788888999984 4466654 68999999996 5777653
No 67
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.73 E-value=0.13 Score=43.10 Aligned_cols=70 Identities=6% Similarity=0.132 Sum_probs=57.1
Q ss_pred CCcEEEEEECCCCCEE-EEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRR-GRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi-~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.||+ .|+.+ .-.+..++|+.+|..-|....+..+..-+|+ |..+.|.+ + ||.++||.+ +..|+|
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi--~~Gk~L~D---~-tL~~~~I~~-g~~i~l 75 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM--VKGGTLKD---D-DWGNIKMKN-GMTVLM 75 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE--ETTEECCS---S-CCCSCCCCS-SCEEEC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCcCCCC---C-CHHHCCCCC-CCEEEE
Confidence 3567888986 67777 4789999999999999998888888888888 67787763 4 999999997 466664
No 68
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.67 E-value=0.15 Score=44.21 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=57.8
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCC---------------cCeEEEcCCCCcccCCCCcccchhh
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKA---------------GTYRLVRPYPRRAFSDGESALTLNE 514 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p---------------~~F~LvT~fPRRvft~eD~s~TLeE 514 (529)
...+|-|+.-+|+.+.-....++||.+|-.-|....+..+ ..|.|+ |.-+.|.+ .+.||.+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~L~d--D~~tL~d 81 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT--SAGEKLTE--DRKKLRD 81 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE--SSSCEECC--SSSBHHH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE--eCCcCccC--CcCCHHH
Confidence 4588999999999999999999999999999976543222 478998 77888874 3689999
Q ss_pred cCCCCCceeEEE
Q 009661 515 LGLTSKQEALFL 526 (529)
Q Consensus 515 lGL~PsqaaL~V 526 (529)
.|+.+ +.+|++
T Consensus 82 ygI~~-g~~l~l 92 (105)
T 1v2y_A 82 YGIRN-RDEVSF 92 (105)
T ss_dssp HTCCS-SEEEEE
T ss_pred cCCCC-CCEEEE
Confidence 99997 466654
No 69
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.16 Score=42.30 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=56.4
Q ss_pred EEEEEECCCCCEEEEE--ecCCCcHHHHHHHH-HhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 452 VTLLVRMPDGSRRGRR--FLKSNKLQSLFDYI-DVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 452 vrIqIRLPDGsRi~RR--F~~SDTLqdLydFV-d~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
..|-||..+|+++.-. +..++|+.+|-.-| ....+..+...+|+ |--|.|.+ +.||.++++.+.+++|.|
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL--LKGKVLHD---NLFLSDLKVTPANSTITV 74 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEE--ETTEECCT---TCBHHHHCCCGGGCEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEE--ECCEECcC---cCCHHHcCCCCCCCEEEE
Confidence 4688999999877665 55999999999999 77778888999998 55687765 689999999423567765
No 70
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.091 Score=44.47 Aligned_cols=69 Identities=12% Similarity=0.245 Sum_probs=55.7
Q ss_pred cEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 451 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 451 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
.++|.||. +|+.+.-.+..++|+.+|...|....+..+...+|+. --+.|.+ +.||.++|+.. +.+|+|
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D---~~tL~~~gI~~-g~tI~l 96 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY--SGKILKD---DQTVESYHIQD-GHSVHL 96 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE--TTEECCT---TSBTTTTTCCT-TEEEEE
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE--CCEECCC---cCcHHHCCCCC-CCEEEE
Confidence 46788887 8888888999999999999999877777788888873 3466654 78999999997 577765
No 71
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=93.12 E-value=0.64 Score=41.36 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=53.2
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhc------CCC--CCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVG------RGI--KAGTYRLVRPYPRRAFSDGESALTLNELGLTS 519 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~------~~~--~p~~F~LvT~fPRRvft~eD~s~TLeElGL~P 519 (529)
...+.|.||+.+|+++.-.|..++|+.+|-.-|... .+. .+...+|+ |=-|.|.+ +.||.++++..
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI--y~GK~LeD---~~TL~~y~I~~ 88 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI--YQGRFLHG---NVTLGALKLPF 88 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE--SSSSEEES---SCBTGGGCCCT
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE--ECCcCCCC---CCcHHHcCCCC
Confidence 456899999999999999999999999999999852 233 25677887 44677764 68999999974
No 72
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=93.04 E-value=0.37 Score=40.39 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.|+..+|+.+..+...+++|..|++......+..+..++|+- =-+.+.. +.|..++++.. +.+|-|
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f--dG~~l~~---~~Tp~dl~med-gD~Idv 86 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF--DGQPINE---TDTPAQLEMED-EDTIDV 86 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TCCTTTTTCCT-TEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE--CCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 467899999999999999999999999999988766777778888873 3444553 57999999996 566654
No 73
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.04 E-value=0.51 Score=40.62 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.|+..+|+.+..+...+++|..|++......+..+..++|+- =-+.|.. +.|..++++.. +.+|.|
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F--dG~~l~~---~~Tp~dl~med-gD~Idv 93 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF--DGQPINE---TDTPAQLEMED-EDTIDV 93 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES--SSSBCCT---TSCTTTTTCCT-TEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE--CCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 467899999999999999999999999999988666677777777773 3444443 57999999986 566655
No 74
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=92.90 E-value=0.24 Score=46.98 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=58.9
Q ss_pred EEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 452 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 452 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
..|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+ |--+.|.+ +.||.++|+.+ ..+|+|
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi--~~Gk~L~D---~~tL~dygI~~-gstI~L 174 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 174 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE--ETTEECCT---TCBGGGGTCCT-TCEEEE
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE--ECCEECCC---CCCHHHCCCCC-CCEEEE
Confidence 68899999999999999999999999999987777888888888 55677764 68999999986 577766
No 75
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=92.89 E-value=0.35 Score=39.74 Aligned_cols=72 Identities=11% Similarity=0.276 Sum_probs=56.5
Q ss_pred CcEEEEEECCCCCEEEE-EecCCCcHHHHHHHHHhcCCCCCcCeEEEcC-CCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGSRRGR-RFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP-YPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~R-RF~~SDTLqdLydFVd~~~~~~p~~F~LvT~-fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
..++|.||. +|+.+.- .+..++|+.+|..-|....+..+..-+|+-. |--+.+.+ +.||.++||.+ +..|+|
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D---~~~L~~~~i~~-g~~l~l 79 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN---DVKLGALKLKP-NTKIMM 79 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT---TSBHHHHTCCT-TEEEEE
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCC---CCCHHHcCCCC-CCEEEE
Confidence 456788887 7877776 7788999999999999888888889999844 43455543 68999999997 466665
No 76
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=92.86 E-value=0.58 Score=37.91 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=57.2
Q ss_pred CCcEEEEEECCCCC-EEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.|+..+|+ .+.-+...+++|+.|++......+..+..++|+- =-+.+.. +.|..++++.. +.+|-|
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f--dG~~l~~---~~Tp~~l~med-gD~Idv 77 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF--DGTKLSG---KELPADLGLES-GDLIEV 77 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE--TTEECCS---CCCHHHHTCCT-TCEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE--CCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 46689999999996 8999999999999999988766777777888773 3444543 67999999986 566655
No 77
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=92.75 E-value=0.5 Score=39.66 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=57.4
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
..++|.|+..+|+.+..+..++++|..|++......+..+..++|+- =-+.+.. +.|..++++.. +.+|-|
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F--dG~~l~~---~~Tp~dl~med-gD~Idv 74 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF--DGQPINE---TDTPAQLEMED-EDTIDV 74 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE--TTEECCT---TCCTTTTTCCT-TEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE--CCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 46889999999999999999999999999988777788888888873 3445554 57999999986 566544
No 78
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=92.72 E-value=0.34 Score=41.18 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=54.1
Q ss_pred CCcEEEEEECCCCC--EEEEEecCCCcHHHHHHHHHhc-CCCC-CcCeEEEcCCCCcccCCCCcccchhhc--CCCCCce
Q 009661 449 ENAVTLLVRMPDGS--RRGRRFLKSNKLQSLFDYIDVG-RGIK-AGTYRLVRPYPRRAFSDGESALTLNEL--GLTSKQE 522 (529)
Q Consensus 449 ~~~vrIqIRLPDGs--Ri~RRF~~SDTLqdLydFVd~~-~~~~-p~~F~LvT~fPRRvft~eD~s~TLeEl--GL~Psqa 522 (529)
...+.|.||.++|+ .+.-....++|+.+|..-|... .+.. +...+|+ |--|.|.+ +.||.++ ++.. ..
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI--y~Gk~L~D---~~tL~~y~~~I~~-~~ 94 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV--YSGRLLPD---HLQLKDILRKQDE-YH 94 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE--ETTEEECT---TSBTHHHHTTTCS-EE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE--ECCEECCC---CCCHHHHhcCCCC-CC
Confidence 35689999999998 3555569999999999999863 3333 4788887 45677764 6899999 9986 56
Q ss_pred eEEE
Q 009661 523 ALFL 526 (529)
Q Consensus 523 aL~V 526 (529)
+|.|
T Consensus 95 tihL 98 (99)
T 2kdb_A 95 MVHL 98 (99)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 79
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=92.68 E-value=0.63 Score=39.48 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=61.0
Q ss_pred CCcEEEEEECCCCC--EEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcC--CCCcccCCCCcccchhhcCCCCCceeE
Q 009661 449 ENAVTLLVRMPDGS--RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP--YPRRAFSDGESALTLNELGLTSKQEAL 524 (529)
Q Consensus 449 ~~~vrIqIRLPDGs--Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~--fPRRvft~eD~s~TLeElGL~PsqaaL 524 (529)
.+.++|.|...+.+ .+.++|..++||..|-.-|+...+..+..-+|+-. -++.+....+.++||.+.|+.+ +..|
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~-g~~I 90 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFD-GFRL 90 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCS-CCEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCC-CCEE
Confidence 56789999987764 69999999999999999999888888888888742 1233222224579999999996 5777
Q ss_pred EEee
Q 009661 525 FLEL 528 (529)
Q Consensus 525 ~VE~ 528 (529)
+|-.
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7643
No 80
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=92.59 E-value=0.48 Score=41.12 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=56.8
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 448 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 448 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
....++|.|+. +|+.+..+...+++|+.|++......+..+..++|+- =-+.+.. +.|..++++.. +.+|-|
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F--dG~rl~~---~~Tp~dl~med-gD~Idv 99 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY--DGIRIQA---DQTPEDLDMED-NDIIEA 99 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TCCTTTTTCCT-TEEEEE
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE--CCeEcCC---CCCHHHcCCCC-CCEEEE
Confidence 34678899999 9999999999999999999988666677778888873 3444543 67999999996 566654
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=92.58 E-value=0.3 Score=44.28 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=56.4
Q ss_pred cEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 451 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 451 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...|.||..+|+.+.-++..++|+.+|..-|....+..+...+|+. -.+.+.+ +.||.+.|+.+ +.+|+|
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~D---~~tL~~y~i~~-g~tl~l 165 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQK-ESTLHL 165 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE--TTEECCT---TSBSGGGTCCT-TCEEEE
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE--CCccCCC---CCcHHHhCCCC-CCEEEE
Confidence 3456667778888888999999999999999887788888899984 4566653 68999999996 577776
No 82
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=92.51 E-value=0.47 Score=37.57 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=55.5
Q ss_pred EEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 452 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 452 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
++|.|+..+|+.+..+...+++|..|++......+..+..++|+- --+.+.. +.|..++++.. +.+|-|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f--dG~~l~~---~~Tp~~l~med-gD~Idv 70 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF--DGQPINE---TDTPAQLEMED-EDTIDV 70 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE--TTEECCT---TCCTTTTTCCT-TEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE--CCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 678999999999999999999999999988766777778888873 3444553 57999999986 566654
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.46 E-value=0.36 Score=40.60 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=57.7
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.|+..+|+.+.-+..++++|..|++.+....+..+..++|+ |=-+.+.. +.|+.++++.. +.+|-|
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~--FdG~~l~~---~~Tp~dl~med-gD~Idv 76 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR--FDGQPINE---TDTPAQLEMED-EDTIDV 76 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TCCTTTTTCCT-TCEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 45689999999999999999999999999998876777778888887 33555554 57999999986 566654
No 84
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=92.21 E-value=0.52 Score=41.13 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=57.5
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.|+..+|+.+..+...+++|+.|++......+..+..++|+- =-+.|.. +.|..++++.. +.+|-|
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF--dG~~L~~---~~Tp~dl~mED-gD~Idv 95 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF--DGTPIDE---TKTPEELGMED-DDVIDA 95 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES--SSCBCCS---SSHHHHHHCSS-EEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE--CCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 467899999999999999999999999999988666777778888873 3444553 57999999986 565544
No 85
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=91.87 E-value=0.49 Score=43.61 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=57.3
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
.|.||..+|+.+.-.+..++|+.+|..-|....+..+...+|+- =-+.|.+ +.||.++|+.+ +.+|+|-
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D---~~tL~~y~I~~-gstI~Lv 70 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQK-ESTLHLV 70 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE--TTEECCT---TSBGGGGTCCT-TCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE--CCccccC---cCcHHHcCCCC-CCEEEEE
Confidence 58899999999999999999999999999887788888888884 3456653 68999999986 5777653
No 86
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.84 E-value=0.57 Score=38.78 Aligned_cols=74 Identities=7% Similarity=0.036 Sum_probs=58.0
Q ss_pred EEEEEECCCCCEEE--E-EecCCCcHHHHHHHHHh-cCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 452 VTLLVRMPDGSRRG--R-RFLKSNKLQSLFDYIDV-GRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 452 vrIqIRLPDGsRi~--R-RF~~SDTLqdLydFVd~-~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
..|-|+...|+... - .+..++|+.+|..-|.. ..++.+..-+|+-.+=.+.|.+ +.||.+.|+.. +++|+|.
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D---~~tL~~y~i~~-~stl~~K 86 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKD---EDVLQKLPVGT-TATLYFR 86 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCT---TCBTTTSSCCS-EEEEEEC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCC---CCCHHHcCCCC-CCEEEEE
Confidence 67888988887753 3 77899999999999986 3567777888876554567653 68999999997 6889886
Q ss_pred eC
Q 009661 528 LV 529 (529)
Q Consensus 528 ~i 529 (529)
.|
T Consensus 87 DL 88 (88)
T 2dzj_A 87 DL 88 (88)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 87
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.59 E-value=0.22 Score=42.38 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=53.5
Q ss_pred EEEEEECCCCCEEEEEec-CCCcHHHHHHHHHhcCCCCCcCeEEEc-CC------CCc--ccC-CCCcccchhhcCCCCC
Q 009661 452 VTLLVRMPDGSRRGRRFL-KSNKLQSLFDYIDVGRGIKAGTYRLVR-PY------PRR--AFS-DGESALTLNELGLTSK 520 (529)
Q Consensus 452 vrIqIRLPDGsRi~RRF~-~SDTLqdLydFVd~~~~~~p~~F~LvT-~f------PRR--vft-~eD~s~TLeElGL~Ps 520 (529)
..|+||.++|+. .-... .++||.+|..-|....+..+...+|+. .. |.. .+. ..+.+.||.++||.+
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~- 85 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH- 85 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT-
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC-
Confidence 679999999975 33567 889999999999877777777777752 22 111 231 023478999999996
Q ss_pred ceeEEEe
Q 009661 521 QEALFLE 527 (529)
Q Consensus 521 qaaL~VE 527 (529)
..+|+|.
T Consensus 86 G~~L~l~ 92 (107)
T 1wf9_A 86 GSMVYLA 92 (107)
T ss_dssp TCEEECC
T ss_pred CCEEEEE
Confidence 6888875
No 88
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.33 E-value=1.2 Score=39.97 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=51.2
Q ss_pred CCcEEEEEECCCCCEE-EEEecCCCcHHHHHHHHHhcC-----CCCC--cCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 009661 449 ENAVTLLVRMPDGSRR-GRRFLKSNKLQSLFDYIDVGR-----GIKA--GTYRLVRPYPRRAFSDGESALTLNELGLTS 519 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi-~RRF~~SDTLqdLydFVd~~~-----~~~p--~~F~LvT~fPRRvft~eD~s~TLeElGL~P 519 (529)
.+.+.|.||+.+|+.+ .-.|..++|+.+|-.-|.... +..+ ..-+|+ |=-|.|.+ +.||.+.++..
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI--y~GK~LeD---~~TLsdy~I~~ 87 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI--SAGKVLEN---SKTVKDYRSPV 87 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE--ETTEECCT---TSBGGGGSCCT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE--ECCeECcC---CCcHHHcCCCc
Confidence 3678999999999988 589999999999999995322 2322 466776 34667764 78999999985
No 89
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=90.84 E-value=0.69 Score=47.04 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=60.3
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
....+|.||..+|+.+.-.+..++||.+|..-|....+..+..-+|+- --+.|.+ +.||.++|+.. +.+|+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~--~Gk~L~D---~~TLsdygI~~-gstL~L 302 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQK-ESTLHL 302 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCT---TSBTGGGTCCT-TCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe--CCeecCC---CCCHHHcCCCC-CCEEEE
Confidence 356889999999999999999999999999999887788888888884 4666653 68999999996 567665
No 90
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=90.78 E-value=0.46 Score=49.32 Aligned_cols=69 Identities=14% Similarity=0.275 Sum_probs=56.8
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHh---cCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDV---GRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEAL 524 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~---~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL 524 (529)
...+|.||..+|+.+.-.+..++||.+|...|.. ..++.+...+|+ |--|.|.+ ++||.++||.. +.+|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi--y~GK~L~D---~~tL~dygI~~-gstI 77 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSD---DVPIRDYRIDE-KNFV 77 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE--SSSSEECS---SSBTTTTCCCT-TSCE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE--ECCeecCC---cCCHHHcCCCC-CCEE
Confidence 4578999999999998899999999999999986 345677888887 56788864 68999999996 3554
No 91
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.74 E-value=0.7 Score=38.27 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=58.2
Q ss_pred cEEEEEECCCCC-EEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCC-Cccc-CCCCcccchhhcCCCCCceeEEEe
Q 009661 451 AVTLLVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYP-RRAF-SDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 451 ~vrIqIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fP-RRvf-t~eD~s~TLeElGL~PsqaaL~VE 527 (529)
.++|.|+..++. .+.++|..++||.+|..-|....+..+..-+|+-.-+ .+.+ ...+.++||.+.|+.+ ...|+|.
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~-g~~l~v~ 85 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDD-GCRIHVI 85 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCT-TCEEEEB
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCC-CCEEEEE
Confidence 478888876554 6899999999999999999988888888888875432 2321 1112378999999996 5788775
Q ss_pred e
Q 009661 528 L 528 (529)
Q Consensus 528 ~ 528 (529)
.
T Consensus 86 d 86 (95)
T 1v6e_A 86 D 86 (95)
T ss_dssp C
T ss_pred E
Confidence 3
No 92
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=90.36 E-value=0.85 Score=41.09 Aligned_cols=74 Identities=27% Similarity=0.367 Sum_probs=54.7
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCC-CcCeEEEcCCC---------------------------CcccC
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIK-AGTYRLVRPYP---------------------------RRAFS 504 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~-p~~F~LvT~fP---------------------------RRvft 504 (529)
.|.||||||+..+-+-..+.++..+...|-...+.. ...|.|+...| |..|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 599999999999999999999999988884433432 34689986444 22222
Q ss_pred C------CCcccchhhcCCCCCceeEEEe
Q 009661 505 D------GESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 505 ~------eD~s~TLeElGL~PsqaaL~VE 527 (529)
. .|.++||.|.|+.. +++|++-
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e-~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEE-HETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCT-TSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCC-CCEEEEE
Confidence 1 14589999999997 5888764
No 93
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.25 E-value=1.8 Score=38.09 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=52.5
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhc------CCC--CCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVG------RGI--KAGTYRLVRPYPRRAFSDGESALTLNELGLTS 519 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~------~~~--~p~~F~LvT~fPRRvft~eD~s~TLeElGL~P 519 (529)
..+.|.||+.+|+++.-.|..++||.+|-.-|... .+. .+...+|+ |=-|.|.+ +.||.++++..
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI--y~GK~LeD---~~TL~~y~I~~ 87 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI--YQGRFLHG---NVTLGALKLPF 87 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE--ETTEEECS---SCBTTTTTCCS
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE--ECCcCCCC---CCcHHHcCCCC
Confidence 56899999999999999999999999999999862 232 46677887 44677764 68999999863
No 94
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.12 E-value=1 Score=40.11 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=59.9
Q ss_pred CcEEEEEE-CCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 450 NAVTLLVR-MPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 450 ~~vrIqIR-LPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
..++|.|. .|+|.++.--|..+.++.+|-+-+....+.....-+|+ |=-|.|.+ +.||.++|+.+ +.++.+.
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI--y~GKiLKD---~eTL~~~gIk~-g~TIhLv 86 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIR--YSGKILKN---NETLVQHGVKP-QEIVQVE 86 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEE--ETTEEECS---SCCHHHHSCCS-SCEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEE--ECCeEcCC---cchHHHcCCCC-CCEEEEE
Confidence 45778887 78999999999999999999999987766777777777 45788875 56999999997 6888775
No 95
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=90.00 E-value=0.058 Score=47.33 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
.|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+ |--+.|.+ +.||.++|+.+ +.+|+|
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~~~I~~-gsti~l 69 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 69 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE--ECCEECCC---CCchhhhccCC-CCEEEE
Confidence 4778889999888899999999999999987777777777777 55666653 78999999986 466654
No 96
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=88.00 E-value=2 Score=37.33 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=58.7
Q ss_pred CcEEEEEECCCCC-EEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCC-CCccc-CCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPY-PRRAF-SDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~f-PRRvf-t~eD~s~TLeElGL~PsqaaL~V 526 (529)
..++|.|+..++. .+.++|..++||.+|..-|....+..+..-+|+-.= -.+.+ ...+.+.||.+.|+.+ +..|+|
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~-g~~ihv 83 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD-GYRIHA 83 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCS-SEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCC-CCEEEE
Confidence 4688888876664 699999999999999999998888888888887421 11222 1113478999999996 688887
Q ss_pred ee
Q 009661 527 EL 528 (529)
Q Consensus 527 E~ 528 (529)
-.
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 97
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=87.94 E-value=1.4 Score=36.37 Aligned_cols=73 Identities=7% Similarity=0.002 Sum_probs=53.7
Q ss_pred cEEEEEECC--CCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcC-----CCCcccCCCCcccchhhcCCCCCcee
Q 009661 451 AVTLLVRMP--DGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP-----YPRRAFSDGESALTLNELGLTSKQEA 523 (529)
Q Consensus 451 ~vrIqIRLP--DGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~-----fPRRvft~eD~s~TLeElGL~Psqaa 523 (529)
+++|.|.-. .+....+||..++||..|-.-|....|..+..-+|+-- |.-+.+ +.+.||.+.|+.. +.+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l---~d~~tL~~Y~i~~-g~~ 77 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNM---ANDKQLGYYQCRD-EFV 77 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSC---CTTSBGGGGTCCT-TCE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEc---CCCCCHHHCCCCC-CCE
Confidence 456666532 33447999999999999999999888888888888731 223333 3479999999996 678
Q ss_pred EEEe
Q 009661 524 LFLE 527 (529)
Q Consensus 524 L~VE 527 (529)
|+|-
T Consensus 78 ihlv 81 (86)
T 4b6w_A 78 IHVV 81 (86)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 98
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=86.31 E-value=0.14 Score=46.95 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
.|.||..+|+.+.-.+..++||.+|-.-|....+..+...+|+ |--+.|.+ +.||.++||.+ +.+|+|
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~dygI~~-gstL~L 69 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 69 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE--ECCEEccc---cCcHHHcCCCC-CCEEEE
Confidence 4778999999888889999999999999987777777777777 55666654 68999999986 466654
No 99
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=86.21 E-value=2.3 Score=37.56 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=56.6
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.|+..+|+.+.-+...+++|+.|++......+.....++|+- =-+.|.. +.|.++|++.. +.+|-|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF--DG~rI~~---~~TP~dL~MED-gD~IdV 109 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF--EGQRIAD---NHTPKELGMEE-EDVIEV 109 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE--TTEECCT---TCCTTTTTCCT-TCEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE--CCeECCC---CCCHHHcCCCC-CCEEEE
Confidence 367899999999999999999999999999887666677788888874 3444543 67999999986 465543
No 100
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=83.62 E-value=1.8 Score=38.41 Aligned_cols=68 Identities=18% Similarity=0.087 Sum_probs=52.9
Q ss_pred EEEECCCCC-EEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC------CceeEEE
Q 009661 454 LLVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS------KQEALFL 526 (529)
Q Consensus 454 IqIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~P------sqaaL~V 526 (529)
|.||.-.|+ .+.-....++||.+|..-|....+..+...+|+ |-.+.|.+ ++||.+.|+.. ..++|.+
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi--~~Gk~LeD---~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY--KDDQLLDD---GKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE--ECCeECCC---CCCHHHcCcccccccCCCCCEEEE
Confidence 344444565 477789999999999999998888889999999 66777754 78999999993 2466665
No 101
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=83.09 E-value=3.4 Score=39.65 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=56.2
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.|+. +|+.+.-+...+++|..|+.......+.....++|+- =-+.+.. +.|.++|++.. +.+|-|
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F--dG~rI~~---~~TP~dL~MEd-gD~Idv 97 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY--DGIRIQA---DQTPEDLDMED-NDIIEA 97 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE--TTEECCT---TCCTTTTTCCT-TEEEEE
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE--CCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 4778999986 9999999999999999999887666777788888873 3455554 67999999986 455543
No 102
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.76 E-value=4.4 Score=34.57 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=53.5
Q ss_pred cEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 451 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 451 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...+.+++ .|+.+.-.+..++|+.+|..-|....+..+..=+|+ .||...+. .+.||.+++|.+ ..+|+|
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi-~~~~gkL~---D~~tLs~~~I~~-gstL~l 78 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLK-GWKTGDVE---DSTVLKSLHLPK-NNSLYV 78 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE-CCSSSCCC---TTSBHHHHCCCS-EEEEEE
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEE-ccCCCCCC---CcCCHHHcCCCC-CCEEEE
Confidence 45677777 677788889999999999999987778877777775 34433353 278999999996 577766
No 103
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=81.71 E-value=2.6 Score=42.71 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=57.9
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcC-CCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP-YPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~-fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
..++|.|+. +|+.+.-.+..++|+.+|-.-|....+..+..-+|+-. |.-+.+.+ +.||.++||.+ +..|+|
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D---~~~L~~~~ik~-g~~l~L 76 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAAD---NVKISALELKP-NFKLMM 76 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCT---TSBTTSSCCC---CEEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCc---cccHHHcCCCC-CCEEEE
Confidence 457899997 78889999999999999999998888888888899843 55566664 68999999997 466654
No 104
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=80.68 E-value=3.8 Score=39.69 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=55.1
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 526 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~V 526 (529)
...++|.|+. +|+.+.-+...+++|..|++......+.....++|+- =-+.|.. +.|.+++++.. +.+|-|
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF--DGqRI~~---ddTPeDLdMED-GDtIDV 125 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY--DGIEIQA---DQTPEDLDMED-NDIIEA 125 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE--TTEECCS---SCCTTTTTCCT-TEEEEE
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE--CCeecCC---CCCHHHcCCCC-CCEEEE
Confidence 4678999985 9999999999999999999987667777777777763 3444443 67999999986 466544
No 105
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.57 E-value=4.4 Score=34.62 Aligned_cols=66 Identities=20% Similarity=0.259 Sum_probs=55.5
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCC-CcccCCCCcccchhhcCCC
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYP-RRAFSDGESALTLNELGLT 518 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fP-RRvft~eD~s~TLeElGL~ 518 (529)
.++||.|-++--.+.+-|-.+.-+|+.|+.-|=....+.+..|.|...+= ...| |.++||.|+||.
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~L---dLskSLndlgir 75 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPL---DLTKSLNDLGLR 75 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBC---CTTSCHHHHTCS
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCccc---chhcchhhhhhh
Confidence 68999999999889999999999999999998556678899999997543 3333 468999999996
No 106
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=80.22 E-value=4.8 Score=34.89 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=54.5
Q ss_pred CCcEEEEEECCC--C--CEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeE
Q 009661 449 ENAVTLLVRMPD--G--SRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEAL 524 (529)
Q Consensus 449 ~~~vrIqIRLPD--G--sRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL 524 (529)
.+.++++|.+-| | ..+.-.+.+++||.+|-.-|....++.+..-+|+ |-++.+.+ +.||.+.|+.-...+|
T Consensus 20 ~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli--~ggkll~D---~~TL~~ygI~~~G~t~ 94 (105)
T 4dbg_A 20 TQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV--IGQRLARD---QETLHSHGVRQNGDSA 94 (105)
T ss_dssp CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEEECT---TCBTGGGTCCSTTCEE
T ss_pred CCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe--ccCeEccC---cCcHHHcCCCCCCCEE
Confidence 355666666544 3 4688899999999999999988888888888877 45664433 7899999995225666
Q ss_pred EE
Q 009661 525 FL 526 (529)
Q Consensus 525 ~V 526 (529)
++
T Consensus 95 hL 96 (105)
T 4dbg_A 95 YL 96 (105)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 107
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=79.47 E-value=5.2 Score=34.13 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=57.9
Q ss_pred EEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 009661 452 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527 (529)
Q Consensus 452 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~VE 527 (529)
-.|.|..|||.|.+-+..++.+|.+|..=+-...++.+..|.|.. -++.+. .+..+.=.||.+ ++.|-+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh--~~k~lD---LSlpfRlsgLpn-nAkLELv 79 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF--QRTVLD---LSLQWRFANLPN-NAKLEMV 79 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE--TTEEES---SSCBHHHHCCCS-SCEEEEE
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe--CCEecc---ccceeEecCCCC-CCEEEEE
Confidence 378899999999999999999999988876556778899999984 467664 488999999987 6887653
No 108
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=78.14 E-value=4.1 Score=38.82 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=50.7
Q ss_pred ECCCC-CEEEEEecCCCcHHHHHHHHHhcCCCCCc-CeEEEcCCCCcccCC-CCcccchhhcCCCCCceeEEEee
Q 009661 457 RMPDG-SRRGRRFLKSNKLQSLFDYIDVGRGIKAG-TYRLVRPYPRRAFSD-GESALTLNELGLTSKQEALFLEL 528 (529)
Q Consensus 457 RLPDG-sRi~RRF~~SDTLqdLydFVd~~~~~~p~-~F~LvT~fPRRvft~-eD~s~TLeElGL~PsqaaL~VE~ 528 (529)
++.+. ..++.+|.+.+|+++|+..|-...+.... +++|-.-|....+.. .+.++||++++|.. +-.|+||.
T Consensus 134 ~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~-~Q~illE~ 207 (217)
T 4a3p_A 134 ENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQ-GQVLVIEQ 207 (217)
T ss_dssp ETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCT-TCEEEEEE
T ss_pred ecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCC-CCEEEEEE
Confidence 44443 34779999999999999999766666654 688886554443332 24578999999997 46777763
No 109
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=78.06 E-value=5.2 Score=38.46 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=48.3
Q ss_pred EEEEecCCCcHHHHHHHHHhcCCCCCc-CeEEEcCCCCcccC-CCCcccchhhcCCCCCceeEEEee
Q 009661 464 RGRRFLKSNKLQSLFDYIDVGRGIKAG-TYRLVRPYPRRAFS-DGESALTLNELGLTSKQEALFLEL 528 (529)
Q Consensus 464 i~RRF~~SDTLqdLydFVd~~~~~~p~-~F~LvT~fPRRvft-~eD~s~TLeElGL~PsqaaL~VE~ 528 (529)
++.+|.+.+|+++|+..|-........ +++|-.-|-...+. ..+.+.||++++|.. +-.|+||.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~-~Q~illE~ 219 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQ-GQVLVIEP 219 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCT-TEEEEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCC-CCEEEEEE
Confidence 568999999999999999766666665 69998755443332 224579999999997 57777773
No 110
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=77.17 E-value=3.9 Score=36.30 Aligned_cols=59 Identities=19% Similarity=0.081 Sum_probs=47.4
Q ss_pred EECCCCC-EEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 009661 456 VRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS 519 (529)
Q Consensus 456 IRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~P 519 (529)
||+..|+ .+.-....++||.+|-.-|....+..+..-+|+ |=-+.+.+ ++||.++||..
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI--~~Gk~LeD---~kTL~dy~I~~ 64 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY--KDDQLLDD---GKTLGECGFTS 64 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTTTTTCCG
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE--eCCeECCC---cCCHHHcCCCc
Confidence 4444455 577788999999999999988788888888998 55677654 79999999985
No 111
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=75.02 E-value=16 Score=31.15 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=53.5
Q ss_pred CCcEEEEEECCCCC-EEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEE
Q 009661 449 ENAVTLLVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALF 525 (529)
Q Consensus 449 ~~~vrIqIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~PsqaaL~ 525 (529)
...++|.|+-.+|+ .+.-+...+++|+.|++......+.....++|.- =-..+.. +.|-.+|++.. +..+-
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F--DG~rI~~---~~TP~dLdMED-gD~ID 94 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF--DGTKLSG---RELPADLGMES-GDLIE 94 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE--TTEECCS---CSCHHHHTCCT-TEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE--CCEEcCC---CCCHHHcCCCC-CCEEE
Confidence 46789999999995 7888999999999999877556677677777763 2333443 67999999986 45543
No 112
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=46.23 E-value=80 Score=31.61 Aligned_cols=69 Identities=25% Similarity=0.276 Sum_probs=47.6
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCC-CCcCeEEEcCCCC----cccCCCCcccchhhcCCC
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGI-KAGTYRLVRPYPR----RAFSDGESALTLNELGLT 518 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~-~p~~F~LvT~fPR----Rvft~eD~s~TLeElGL~ 518 (529)
....+.|.||||+...-.+.++.+.++|++-|-...+. ....|.|...-+- ....-.+.+++|.+.+..
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~ 157 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVE 157 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCC
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCC
Confidence 34678899999999999999999999999999655544 3567888764431 111222346777776654
No 113
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=42.70 E-value=6.4 Score=33.06 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.0
Q ss_pred CCCCCccchhhhhhhhhhhH
Q 009661 186 RQPHLEDVDLAHAVSLSLRT 205 (529)
Q Consensus 186 ~~~~~ed~d~a~avslsl~~ 205 (529)
+....+|+||.+||-|||+.
T Consensus 6 ~~~~~eDeDLkrAieLSL~E 25 (81)
T 1q0v_A 6 STPEDEEELIRKAIELSLKE 25 (81)
T ss_dssp CCCSSHHHHHHHHHHHHHHC
T ss_pred ccccCchHHHHHHHHHhHHH
Confidence 45567899999999999975
No 114
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=40.51 E-value=5.9 Score=37.72 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchh
Q 009661 453 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLN 513 (529)
Q Consensus 453 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLe 513 (529)
.|-||..+|+.+.-....++||.+|...|....+..+...+|+ |--+.|.+ +.||.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLI--f~GK~LeD---~~TLs 57 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLV--NNGFIAPN---TELVT 57 (189)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEE--ecCeECCC---CCccc
Confidence 4778989999888889999999999999987777788888887 45566654 46766
No 115
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=32.41 E-value=1.5e+02 Score=29.72 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=54.2
Q ss_pred cEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCC----CCCcCeEEEc--CCCCcccCCCCcccchhhcCCCCCceeE
Q 009661 451 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRG----IKAGTYRLVR--PYPRRAFSDGESALTLNELGLTSKQEAL 524 (529)
Q Consensus 451 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~----~~p~~F~LvT--~fPRRvft~eD~s~TLeElGL~PsqaaL 524 (529)
...|.|+++ +...+-+|.++.++.++...|..... ....+|-|.. ..|++-.-. +..+||+..|+.+ +..|
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~~y~~~~-~~~l 79 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALDYYMLRN-GDTM 79 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGGGGTCCT-TCEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHHHhCCCC-Ccee
Confidence 467889998 77788999999999999999854332 2467899986 457775544 3477999999986 4555
Q ss_pred E
Q 009661 525 F 525 (529)
Q Consensus 525 ~ 525 (529)
.
T Consensus 80 ~ 80 (371)
T 3ivf_A 80 E 80 (371)
T ss_dssp E
T ss_pred e
Confidence 4
No 116
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=31.77 E-value=8.4 Score=28.72 Aligned_cols=40 Identities=38% Similarity=0.386 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhHHHHhhccCCCCCCCCCCCccchhhhhhhhhhh
Q 009661 159 IEEEMIRAAIEASKQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLR 204 (529)
Q Consensus 159 ieeemiraaieask~~~~~~~~~~~~~~~~~~ed~d~a~avslsl~ 204 (529)
-||||+--|...|.+|+-..++ ++..||.-|-+||.-||.
T Consensus 5 tEEEq~ALA~rmSeQEA~~vn~------~eE~EdellrKAIaESLn 44 (45)
T 3a1q_C 5 SEEEQFALALKMSEQEAREVNN------QEEKEEELLRKAIAESLN 44 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHHHHHHhhh------HHHHHHHHHHHHHHHHhc
Confidence 3899999999999998877633 233455556777765553
No 117
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=28.85 E-value=75 Score=31.10 Aligned_cols=46 Identities=15% Similarity=-0.003 Sum_probs=36.9
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCC-CcCeEEE
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIK-AGTYRLV 495 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~-p~~F~Lv 495 (529)
..+.+.|.|+||+.+.-.+.++.|.++|++-|-...++. ..-|.|.
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~ 62 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLA 62 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEE
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEE
Confidence 457899999999999999999999999999996555543 3456665
No 118
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=28.34 E-value=7.7 Score=29.03 Aligned_cols=39 Identities=38% Similarity=0.405 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHHhhccCCCCCCCCCCCccchhhhhhhhhhh
Q 009661 160 EEEMIRAAIEASKQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLR 204 (529)
Q Consensus 160 eeemiraaieask~~~~~~~~~~~~~~~~~~ed~d~a~avslsl~ 204 (529)
||||+--|...|.+|+.+.++ +...||.-|-+||--||.
T Consensus 3 EEEq~ALA~kmSeQEA~~vn~------~eE~E~~llrKAIaESLn 41 (46)
T 2rr9_C 3 EEEQFALALKMSEQEAREVNS------QEEEEEELLRKAIAESLN 41 (46)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhhh------HHHHHHHHHHHHHHHHHH
Confidence 688888888888888877632 233445556666655553
No 119
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=28.13 E-value=12 Score=36.63 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCCCCCCCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCc
Q 009661 442 QEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQ 521 (529)
Q Consensus 442 pEP~a~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~Psq 521 (529)
|+|.+ ...++|.| -.+|+.+.-+...+++|..|++......+..+..++|. |--+.+.. +.|.+++++.. +
T Consensus 14 ~~~~p--~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFL--FDGqRI~d---ddTPadL~MED-G 84 (227)
T 3v7o_A 14 PEVKP--ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL--YDGIRIQA---DQTPEDLDMED-N 84 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCC--CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEE--ECCEecCC---CCCHHHcCCCC-C
Confidence 44443 35678888 55999999999999999999997755556666666665 33444543 57888888875 3
Q ss_pred eeE
Q 009661 522 EAL 524 (529)
Q Consensus 522 aaL 524 (529)
.++
T Consensus 85 DtI 87 (227)
T 3v7o_A 85 DII 87 (227)
T ss_dssp ---
T ss_pred CEE
Confidence 443
No 120
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=25.89 E-value=1.9e+02 Score=24.77 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=48.1
Q ss_pred CCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 009661 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS 519 (529)
Q Consensus 449 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~P 519 (529)
...++|.|| -+|..+.-+-..+++|+.|++-.-...+..+...+++ |--..+.. +.|-++||+.-
T Consensus 19 ~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFl--fDG~rI~~---~~TP~~L~meD 83 (95)
T 2l76_A 19 PRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLL--FGETELSP---TATPRTLKLGV 83 (95)
T ss_dssp CCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEE--ETTEECCT---TSCHHHHTCCS
T ss_pred CCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEE--ECCcCCCC---CCCHhHcCCCC
Confidence 456999999 5888899999999999999987644556777777766 33444443 56888888874
No 121
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.10 E-value=5.7e+02 Score=26.58 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=4.0
Q ss_pred HHHHHccCCCCCC
Q 009661 433 LAAKEASLPQEPA 445 (529)
Q Consensus 433 r~~K~asLPpEP~ 445 (529)
++.+...+..-|+
T Consensus 574 ~~~l~~~~~~~~~ 586 (597)
T 3oja_B 574 VKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHTTC----
T ss_pred HHHHHHHhcCCCc
Confidence 3333445554443
No 122
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=21.24 E-value=1.6e+02 Score=31.16 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=39.4
Q ss_pred CcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCC--CcCeEEEc
Q 009661 450 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIK--AGTYRLVR 496 (529)
Q Consensus 450 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~--p~~F~LvT 496 (529)
..+.+.|.|+||+.+.-.+.++.+.++|++-|-...+.. ...|.|..
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 457899999999999999999999999999997666664 34688875
No 123
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=20.88 E-value=2.4e+02 Score=26.40 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=38.5
Q ss_pred CCCCCCCCCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEc
Q 009661 441 PQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVR 496 (529)
Q Consensus 441 PpEP~a~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT 496 (529)
.|+|. ..+.++|.|+- +|+.+.-+...+++|..|++-.....+.....++|.-
T Consensus 13 ~~~~~--~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~f 65 (209)
T 3uf8_A 13 KPEVK--PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 65 (209)
T ss_dssp -------CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEE
T ss_pred cceeC--CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEE
Confidence 34444 34788899987 8888899999999999998866556677777777763
No 124
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=20.10 E-value=22 Score=36.19 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 009661 448 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS 519 (529)
Q Consensus 448 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL~P 519 (529)
..+.++|.|+- +|+.+.-+...+++|+.|++......+.....++|. |--+.+.. +.|-++||+..
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~--f~G~~i~~---~~Tp~~l~med 92 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL--YDGIRIQA---DQAPEDLDMED 92 (389)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEE--ECCEEcCC---CCCHHHcCCCC
Confidence 34677788876 777788888999999999987755556655555554 44455553 57888888875
Done!