Query 009662
Match_columns 529
No_of_seqs 352 out of 1621
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 15:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 8E-44 1.7E-48 336.3 21.2 167 76-245 11-185 (186)
2 PRK04143 hypothetical protein; 100.0 1.6E-41 3.4E-46 336.8 20.5 170 81-251 81-262 (264)
3 cd02905 Macro_GDAP2_like Macro 100.0 3.2E-41 7E-46 306.6 17.2 138 84-221 2-140 (140)
4 cd02907 Macro_Af1521_BAL_like 100.0 4.4E-40 9.6E-45 311.2 21.4 170 82-251 1-175 (175)
5 cd02908 Macro_Appr_pase_like M 100.0 3.7E-40 8.1E-45 308.8 20.4 163 84-248 1-164 (165)
6 PRK00431 RNase III inhibitor; 100.0 6E-38 1.3E-42 297.2 20.0 168 81-250 1-173 (177)
7 cd02906 Macro_1 Macro domain, 100.0 2.1E-36 4.5E-41 277.7 15.5 135 84-218 1-147 (147)
8 COG2110 Predicted phosphatase 100.0 4.1E-35 8.9E-40 274.3 17.3 166 83-251 3-175 (179)
9 cd02903 Macro_BAL_like Macro d 100.0 8.3E-35 1.8E-39 264.4 16.7 134 83-220 1-137 (137)
10 KOG2633 Hismacro and SEC14 dom 100.0 6.3E-35 1.4E-39 273.9 15.1 180 69-257 19-199 (200)
11 cd03330 Macro_2 Macro domain, 100.0 1.5E-30 3.2E-35 235.3 16.3 131 84-217 1-132 (133)
12 cd02900 Macro_Appr_pase Macro 99.9 4E-26 8.6E-31 216.3 16.1 138 83-221 29-186 (186)
13 cd02749 Macro Macro domain, a 99.9 1.4E-25 3.1E-30 205.5 16.1 134 84-217 1-146 (147)
14 smart00506 A1pp Appr-1"-p proc 99.9 1.3E-25 2.8E-30 202.1 15.2 129 84-213 1-133 (133)
15 PRK13341 recombination factor 99.9 3E-27 6.4E-32 265.3 -1.6 173 77-253 469-707 (725)
16 PF01661 Macro: Macro domain; 99.9 2.2E-24 4.9E-29 189.7 11.5 113 101-213 1-118 (118)
17 PF13716 CRAL_TRIO_2: Divergen 99.9 4.9E-23 1.1E-27 189.2 9.1 130 396-527 2-134 (149)
18 KOG4406 CDC42 Rho GTPase-activ 99.8 3.4E-21 7.4E-26 196.0 10.7 134 389-522 71-209 (467)
19 cd02901 Macro_Poa1p_like Macro 99.8 3.7E-19 8E-24 162.1 12.7 134 84-219 1-139 (140)
20 smart00516 SEC14 Domain in hom 99.8 5.5E-19 1.2E-23 162.8 12.0 126 402-529 14-149 (158)
21 cd00170 SEC14 Sec14p-like lipi 99.7 1.2E-17 2.6E-22 152.0 11.3 133 396-529 9-150 (157)
22 KOG1470 Phosphatidylinositol t 99.7 9.8E-17 2.1E-21 162.0 13.5 149 377-527 73-233 (324)
23 PF00650 CRAL_TRIO: CRAL/TRIO 99.7 1.1E-16 2.5E-21 147.5 7.7 138 391-529 2-152 (159)
24 PHA02595 tk.4 hypothetical pro 99.4 5.7E-12 1.2E-16 116.8 14.4 130 84-216 2-140 (154)
25 KOG1471 Phosphatidylinositol t 99.2 6.1E-11 1.3E-15 122.4 9.3 131 398-529 97-249 (317)
26 PF14519 Macro_2: Macro-like d 98.4 1.2E-06 2.6E-11 87.3 9.7 139 84-223 43-216 (280)
27 cd03331 Macro_Poa1p_like_SNF2 98.0 0.00018 4E-09 66.4 14.1 127 85-213 2-145 (152)
28 TIGR02452 conserved hypothetic 97.1 0.003 6.5E-08 63.6 10.1 157 82-239 55-255 (266)
29 PF10154 DUF2362: Uncharacteri 95.8 0.062 1.3E-06 58.7 10.5 118 135-253 372-503 (510)
30 COG4295 Uncharacterized protei 95.6 0.068 1.5E-06 51.4 9.0 82 168-250 197-280 (285)
31 KOG1826 Ras GTPase activating 91.3 0.098 2.1E-06 63.4 1.7 136 386-522 1552-1689(2724)
32 PF01073 3Beta_HSD: 3-beta hyd 30.3 1.1E+02 0.0024 31.0 5.9 46 150-195 67-114 (280)
33 PF04378 RsmJ: Ribosomal RNA s 29.2 3.4E+02 0.0074 27.2 9.0 89 406-507 124-233 (245)
34 cd06155 eu_AANH_C_1 A group of 28.7 1.3E+02 0.0028 25.3 5.3 49 205-253 23-74 (101)
35 KOG1502 Flavonol reductase/cin 28.0 1.1E+02 0.0024 32.0 5.4 46 150-195 79-127 (327)
36 PHA00684 hypothetical protein 25.4 1.7E+02 0.0038 26.2 5.4 45 170-214 55-99 (128)
37 PF01042 Ribonuc_L-PSP: Endori 25.1 2.4E+02 0.0053 24.4 6.5 52 204-255 39-93 (121)
38 PRK14827 undecaprenyl pyrophos 22.5 2.6E+02 0.0056 28.9 6.9 39 174-212 97-135 (296)
39 PF03641 Lysine_decarbox: Poss 21.4 1.9E+02 0.0041 25.8 5.1 62 461-522 64-132 (133)
40 PRK14841 undecaprenyl pyrophos 21.2 2.9E+02 0.0064 27.4 6.8 49 172-221 31-79 (233)
41 PLN02214 cinnamoyl-CoA reducta 21.2 2E+02 0.0043 29.7 6.0 44 150-195 82-125 (342)
42 PLN02725 GDP-4-keto-6-deoxyman 20.9 1.7E+02 0.0037 29.1 5.3 46 149-194 49-98 (306)
43 cd06150 YjgF_YER057c_UK114_lik 20.3 2.2E+02 0.0048 24.0 5.1 50 205-254 26-78 (105)
44 PRK14837 undecaprenyl pyrophos 20.2 1.5E+02 0.0031 29.5 4.4 50 171-221 33-82 (230)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=8e-44 Score=336.28 Aligned_cols=167 Identities=23% Similarity=0.388 Sum_probs=154.8
Q ss_pred ccccCCCCEEEEEEcCc--ceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEEcccCCC
Q 009662 76 PVDHEINSKIYLWRGNP--WNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDL 148 (529)
Q Consensus 76 ~~~~~~n~~I~i~~GDI--~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~T~~~~L 148 (529)
......|.+|.+|+||| |++++|||||+||++|.+++| +++|+++||++|++||+++ ++|++|++++|+||+|
T Consensus 11 ~~~~~~~~~i~i~~gDI~~t~~~vDaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~a~~L 90 (186)
T cd02904 11 TKSLFLGQKLSLVQSDISIGSIDVEGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQAHGL 90 (186)
T ss_pred chhhcCCCEEEEEECCccccceeccEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEccCCCC
Confidence 34455889999999999 999999999999999998776 6999999999999999865 7999999999999999
Q ss_pred CCCeEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcC-CC
Q 009662 149 PARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DK 227 (529)
Q Consensus 149 ~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~-~~ 227 (529)
|||||||||||.|+.+ ..++.|++||++||++|++++++|||||+||||++|||++++|++|+++|++|++.++ ++
T Consensus 91 p~k~VIHtVgP~~~~~---~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~~~ 167 (186)
T cd02904 91 PAKFVIHCHSPQWGSD---KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMSSS 167 (186)
T ss_pred CCCEEEEeCCCCCCCC---chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999664 2468999999999999999999999999999999999999999999999999999874 67
Q ss_pred ceEEEEEecCchhHHHHH
Q 009662 228 ISAVVFCTTTASDTEIYK 245 (529)
Q Consensus 228 i~~V~fv~~~~~~~~~y~ 245 (529)
+++|+||+++++++++|.
T Consensus 168 l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 168 IKQIYFVLFDSESIGIYV 185 (186)
T ss_pred ccEEEEEECCHHHHHHhh
Confidence 999999999999999985
No 2
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=336.75 Aligned_cols=170 Identities=41% Similarity=0.635 Sum_probs=155.6
Q ss_pred CCCEEEEEEcCcceeeccEEEEcCCCCCCCC-----C-cHHHHHHhhChhHHHHHHHh-----CCCCCCCeEEcccCCCC
Q 009662 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEA-----H-SSPGLHAAAGPGLAEECATL-----GGCRTGMAKVTNAYDLP 149 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~-----~-~~~aI~~~aG~~L~~e~~~~-----~~~~~G~a~~T~~~~L~ 149 (529)
.|.+|.||+||||++++|||||+||+.|.++ | .+++||++||++|++||+++ ..+++|++++|+||+||
T Consensus 81 ~~~~i~i~~GDIt~l~vDAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~iT~~~nLp 160 (264)
T PRK04143 81 KYDNIFLWQGDITRLKVDAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKITRAYNLP 160 (264)
T ss_pred CCCEEEEEECCcceeecCEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEEecCCCCC
Confidence 5789999999999999999999999999743 3 46999999999999999876 36899999999999999
Q ss_pred CCeEEEEcCCCccC-cchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCc
Q 009662 150 ARRVIHTVGPKYAV-KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKI 228 (529)
Q Consensus 150 ~k~IIH~VgP~~~~-~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i 228 (529)
|+||||||||.|+. ......++.|++||++||++|.+++++|||||+||||++|||++.||++|++++++|++.+++.
T Consensus 161 ~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~- 239 (264)
T PRK04143 161 AKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSK- 239 (264)
T ss_pred CCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-
Confidence 99999999999987 3444567899999999999999999999999999999999999999999999999999998765
Q ss_pred eEEEEEecCchhHHHHHHhcccc
Q 009662 229 SAVVFCTTTASDTEIYKRLLPLY 251 (529)
Q Consensus 229 ~~V~fv~~~~~~~~~y~~~l~~y 251 (529)
.+|+|++++++++++|+++|..+
T Consensus 240 ~~Vif~vf~~~d~~iy~~~l~~~ 262 (264)
T PRK04143 240 LKVVFNVFTDEDLELYQKALNKE 262 (264)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHh
Confidence 68999999999999999988643
No 3
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=3.2e-41 Score=306.65 Aligned_cols=138 Identities=61% Similarity=0.948 Sum_probs=133.5
Q ss_pred EEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcCCCcc
Q 009662 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~VgP~~~ 162 (529)
+|.||+|||+++++|||||++|++|.+++| +++|+++||++|++||++.++|++|++++|++|+|||+||||+|||+|+
T Consensus 2 ki~l~~GdIt~~~vDaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~~~~~G~~~~T~~~~L~~k~VIH~vgP~~~ 81 (140)
T cd02905 2 RIVLWEGDICNLNVDAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLGGCRTGEAKLTKGYNLPARFIIHTVGPKYN 81 (140)
T ss_pred eEEEEeCccCcccCCEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCcEEEecCCCCCccEEEEecCCccC
Confidence 699999999999999999999999987665 7999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHH
Q 009662 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (529)
Q Consensus 163 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl 221 (529)
.++.+++++.|++||++||++|.+++++|||||+||||++|||++.+|++|+++|++||
T Consensus 82 ~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 82 VKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 99888888999999999999999999999999999999999999999999999999995
No 4
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=4.4e-40 Score=311.18 Aligned_cols=170 Identities=26% Similarity=0.426 Sum_probs=160.4
Q ss_pred CCEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEEcccCCCCCCeEEEE
Q 009662 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIHT 156 (529)
Q Consensus 82 n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~T~~~~L~~k~IIH~ 156 (529)
|.+|+||+|||+++++|||||++|+++.+++| +++|++++|++|++||+++ ++|++|++++|++|+|+|++|||+
T Consensus 1 ~~~i~i~~GdI~~~~~DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~~~~L~~k~IiH~ 80 (175)
T cd02907 1 GVTLSVIKGDITRFPVDAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTSAGKLPCKYVIHA 80 (175)
T ss_pred CcEEEEEECCcceeecCEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCCCEEEEe
Confidence 57899999999999999999999999987765 7999999999999999764 899999999999999999999999
Q ss_pred cCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEec
Q 009662 157 VGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTT 236 (529)
Q Consensus 157 VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~ 236 (529)
|+|.|+.+......+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++++++.+++|+||++
T Consensus 81 v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~I~~v~~ 160 (175)
T cd02907 81 VGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKEIYLVDY 160 (175)
T ss_pred CCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEEC
Confidence 99999988766678999999999999999999999999999999999999999999999999999998778999999999
Q ss_pred CchhHHHHHHhcccc
Q 009662 237 TASDTEIYKRLLPLY 251 (529)
Q Consensus 237 ~~~~~~~y~~~l~~y 251 (529)
+++++++|++.|..|
T Consensus 161 ~~~~~~~~~~al~~~ 175 (175)
T cd02907 161 DEQTVEAFEKALEVF 175 (175)
T ss_pred CHHHHHHHHHHHhhC
Confidence 999999999988754
No 5
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=3.7e-40 Score=308.75 Aligned_cols=163 Identities=45% Similarity=0.725 Sum_probs=154.3
Q ss_pred EEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcCCCcc
Q 009662 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~VgP~~~ 162 (529)
+|+||+|||+++++|||||++|++|.+++| +++|+++||++|++||++++++++|++++|++|+|+|+||||+|||+|+
T Consensus 1 ~i~i~~GdI~~~~~daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~~~~~G~~v~T~~~~l~~~~IiH~v~P~~~ 80 (165)
T cd02908 1 KIEIIQGDITKLEVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELRGCPTGEAVITSGYNLPAKYVIHTVGPVWR 80 (165)
T ss_pred CeEEEecccceeecCEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCCEEEeeCCCCCCCEEEEEcCCccc
Confidence 589999999999999999999999998766 7999999999999999999999999999999999999999999999998
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEecCchhHH
Q 009662 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 242 (529)
Q Consensus 163 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~~~~~~~ 242 (529)
.+ .....+.|++||++||+.|.+++++|||||+||||++|||++.+|++|++++++|+++ .+++++|+||++++++++
T Consensus 81 ~~-~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~-~~~l~~V~~v~~~~~~~~ 158 (165)
T cd02908 81 GG-QHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEE-HDAIERVIFVCFSEEDYE 158 (165)
T ss_pred CC-CCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEeCCHHHHH
Confidence 76 3345789999999999999999999999999999999999999999999999999988 557999999999999999
Q ss_pred HHHHhc
Q 009662 243 IYKRLL 248 (529)
Q Consensus 243 ~y~~~l 248 (529)
+|++.|
T Consensus 159 ~f~~~l 164 (165)
T cd02908 159 IYEKAL 164 (165)
T ss_pred HHHHHh
Confidence 999876
No 6
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=6e-38 Score=297.17 Aligned_cols=168 Identities=39% Similarity=0.593 Sum_probs=156.8
Q ss_pred CCCEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEEcccCCCCCCeEEE
Q 009662 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIH 155 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~T~~~~L~~k~IIH 155 (529)
.+.+|+|++|||+++++|||||++|+++.+++| +++|++++|++|++||+++ +++++|++++|++|+|+|+||||
T Consensus 1 ~~~~i~i~~Gdi~~~~~daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~~~~l~~~~IiH 80 (177)
T PRK00431 1 MGMRIEVVQGDITELEVDAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITSAGRLPAKYVIH 80 (177)
T ss_pred CCcEEEEEeCCcccccCCEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCCCCCEEEE
Confidence 367999999999999999999999999988765 7999999999999999987 89999999999999999999999
Q ss_pred EcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEe
Q 009662 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCT 235 (529)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~ 235 (529)
+|||.|+.+... ..+.|++||++||+.|.+++++|||||+||||++|||++.+|++|++++++|+++. +.+++|+||+
T Consensus 81 ~v~P~~~~~~~~-~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~-~~l~~I~~v~ 158 (177)
T PRK00431 81 TVGPVWRGGEDN-EAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRH-KSPEEVYFVC 158 (177)
T ss_pred ecCCeecCCCCc-HHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcC-CCcCEEEEEE
Confidence 999999876554 57899999999999999999999999999999999999999999999999998654 5799999999
Q ss_pred cCchhHHHHHHhccc
Q 009662 236 TTASDTEIYKRLLPL 250 (529)
Q Consensus 236 ~~~~~~~~y~~~l~~ 250 (529)
++++++++|++.|..
T Consensus 159 ~~~~~~~~f~~~l~~ 173 (177)
T PRK00431 159 YDEEAYRLYERLLTQ 173 (177)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998863
No 7
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=2.1e-36 Score=277.69 Aligned_cols=135 Identities=44% Similarity=0.717 Sum_probs=124.5
Q ss_pred EEEEEEcCcceeeccEEEEcCCCCCCCC-----C-cHHHHHHhhChhHHHHHHHh----C-CCCCCCeEEcccCCCCCCe
Q 009662 84 KIYLWRGNPWNLEVDTVVNSTNENLDEA-----H-SSPGLHAAAGPGLAEECATL----G-GCRTGMAKVTNAYDLPARR 152 (529)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~-----~-~~~aI~~~aG~~L~~e~~~~----~-~~~~G~a~~T~~~~L~~k~ 152 (529)
+|+||+|||+++++|||||++|++|.++ + .+++|+++||++|++||+++ + .+++|++++|++|+|||+|
T Consensus 1 ~i~v~~GdIt~~~~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~~~~L~~k~ 80 (147)
T cd02906 1 SIYLWKGDITTLKVDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITPGYNLPAKY 80 (147)
T ss_pred CeEEEECCcCCccCCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCE
Confidence 5889999999999999999999999743 3 36999999999999999876 3 6899999999999999999
Q ss_pred EEEEcCCCccCcch-hhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHH
Q 009662 153 VIHTVGPKYAVKYH-TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 218 (529)
Q Consensus 153 IIH~VgP~~~~~~~-~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~ 218 (529)
|||+|||+|+.++. ...++.|++||++||+.|.+++++|||||+||||++|||++++|++|+++||
T Consensus 81 VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 81 VIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred EEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 99999999988764 3457899999999999999999999999999999999999999999999986
No 8
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=4.1e-35 Score=274.28 Aligned_cols=166 Identities=36% Similarity=0.564 Sum_probs=152.5
Q ss_pred CEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhC----C--CCCCCeEEcccCCCCCCeEEE
Q 009662 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLG----G--CRTGMAKVTNAYDLPARRVIH 155 (529)
Q Consensus 83 ~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~----~--~~~G~a~~T~~~~L~~k~IIH 155 (529)
..|.+++|||+++++|||||+||++|.+||| +.+|++++|++|+++|+++. + +++|++++|++|+|+++||||
T Consensus 3 ~~i~~v~GDIt~~~~daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~~ViH 82 (179)
T COG2110 3 TNIRVVQGDITKLEADAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAKYVIH 82 (179)
T ss_pred ceEEEEecccceeehhheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCCEEEe
Confidence 5789999999999999999999999998876 58999999999999998763 3 667999999999999999999
Q ss_pred EcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEe
Q 009662 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCT 235 (529)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~ 235 (529)
+|||.|..+.+ ...+.|..||+++|++|.+++++|||||+||||++|||++.+|.++++++++|+.. ..+..|+|++
T Consensus 83 ~vgp~~~~g~~-~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~--~~~~~v~~v~ 159 (179)
T COG2110 83 TVGPSWRGGSK-DEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPE--ASIETVIFVV 159 (179)
T ss_pred cCCCcccCCCh-hHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhccc--ccccEEEEEe
Confidence 99999988844 34689999999999999999999999999999999999999999999999999976 4688999999
Q ss_pred cCchhHHHHHHhcccc
Q 009662 236 TTASDTEIYKRLLPLY 251 (529)
Q Consensus 236 ~~~~~~~~y~~~l~~y 251 (529)
++.++...|+.++...
T Consensus 160 ~~~e~~~~~~~~~~~~ 175 (179)
T COG2110 160 YGEETARVYEELLSTH 175 (179)
T ss_pred cCchhHHHHHHHHhhh
Confidence 9999999999887653
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=8.3e-35 Score=264.35 Aligned_cols=134 Identities=27% Similarity=0.332 Sum_probs=125.3
Q ss_pred CEEEEEEcCcceeeccEEEEcCCCC-CCCCCc-HHHHHHhhChhHHHHHHHhCCCCC-CCeEEcccCCCCCCeEEEEcCC
Q 009662 83 SKIYLWRGNPWNLEVDTVVNSTNEN-LDEAHS-SPGLHAAAGPGLAEECATLGGCRT-GMAKVTNAYDLPARRVIHTVGP 159 (529)
Q Consensus 83 ~~I~i~~GDI~~~~vDaIVNsaN~~-l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~-G~a~~T~~~~L~~k~IIH~VgP 159 (529)
.+|+|++|||+++++|||||++|++ +.+++| +++|++++|+++++||+++..++. |++++|++|+|||+||||+|+|
T Consensus 1 ~~i~i~~GdI~~~~~DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~~~p 80 (137)
T cd02903 1 LTLQVAKGDIEDETTDVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKLGQTVGSVIVTKGGNLPCKYVYHVVLP 80 (137)
T ss_pred CEEEEEeCccCCccCCEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHcCCCCCCeEEEecCCCCCCCEEEEecCC
Confidence 3689999999999999999999999 566554 799999999999999999988885 9999999999999999999999
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHH
Q 009662 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRF 220 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~f 220 (529)
+|..+ ..+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|
T Consensus 81 ~~~~~----~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 81 NWSNG----ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCCCc----hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 99765 4679999999999999999999999999999999999999999999999986
No 10
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.3e-35 Score=273.86 Aligned_cols=180 Identities=44% Similarity=0.665 Sum_probs=162.3
Q ss_pred CCCCCCcccccCCCCEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCC
Q 009662 69 NGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYD 147 (529)
Q Consensus 69 ~~~~~~f~~~~~~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~ 147 (529)
...-+.|+++...|.+|.+|+||++++++|||| |..|++ ..+||++|||++..||.++..|++|.+++|++++
T Consensus 19 ~~~l~~f~~~~~~~~~i~lwr~d~~~l~v~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~ 92 (200)
T KOG2633|consen 19 ITSLEVFKIDKPDNGGISLWRGDGKTLEVDAVV------LLGGKGVDEAIHRAAGPELPLECAYLHGCRTGAAKSTGGYG 92 (200)
T ss_pred ccccchhhccCccccCeeEeecccccccceeee------eccCcchhHHHHHhcCCcchHHHHhhcCCCCCeeEecCCCC
Confidence 345678999999999999999999999999998 555544 6999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCC
Q 009662 148 LPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDK 227 (529)
Q Consensus 148 L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~ 227 (529)
|||++|||+|||+|...+.+++. .|+.||++||.+|.+++++|||||+|++|++|||.+.+|++.++++++|++.+...
T Consensus 93 Lpak~vIHtvgP~~~~d~~~~~~-~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f~~~~d~ 171 (200)
T KOG2633|consen 93 LPAKRVIHTVGPRWKEDKLQECY-FLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFFVKNKDS 171 (200)
T ss_pred CceeEEEEecCchhhccchHHHH-HHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHHhhCCCc
Confidence 99999999999999998888766 89999999999999999999999999999999999999999999999999998743
Q ss_pred ceEEEEEecCchhHHHHHHhccccCCCChh
Q 009662 228 ISAVVFCTTTASDTEIYKRLLPLYFPRDKH 257 (529)
Q Consensus 228 i~~V~fv~~~~~~~~~y~~~l~~yfpr~~~ 257 (529)
. +++|.+.+.+.+.|..+++.|||++..
T Consensus 172 ~--l~~~~f~~~d~e~~~~~l~~~~~~~~~ 199 (200)
T KOG2633|consen 172 S--LKTVPFLDYDSESYGAYLPEYAPSDAK 199 (200)
T ss_pred e--EEEEEEeccCCchHHHHHhhhcccccc
Confidence 3 444455566777888999999998754
No 11
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.97 E-value=1.5e-30 Score=235.28 Aligned_cols=131 Identities=25% Similarity=0.371 Sum_probs=122.4
Q ss_pred EEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcCCCcc
Q 009662 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~VgP~~~ 162 (529)
.|++|+|||+++++|||||++|+.+.+++| +++|++++|+++++||.+.+.+++|++++|++++|+||||||+++|.+.
T Consensus 1 ~i~i~~GdI~~~~~DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~~~~~G~~~~t~~~~l~~k~Iih~~~~~~~ 80 (133)
T cd03330 1 ELEVVQGDITKVDADAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKAPIPVGEAVITGAGDLPARYVIHAATMEEP 80 (133)
T ss_pred CEEEEEcccccccCCEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCCeEEEEeCCCCCCCEEEEeCCCCCC
Confidence 378999999999999999999999988766 7999999999999999999999999999999999999999999999875
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHH
Q 009662 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTV 217 (529)
Q Consensus 163 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti 217 (529)
.. ...+.|++||++||+.|.+++++|||||+||||++|||++++|++|.++|
T Consensus 81 ~~---~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 81 GR---SSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred CC---CHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 42 33578999999999999999999999999999999999999999999886
No 12
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.94 E-value=4e-26 Score=216.30 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=117.2
Q ss_pred CEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhC-hhHHHHHHHh------CCCCCCCeEEcccCCCC-----
Q 009662 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAG-PGLAEECATL------GGCRTGMAKVTNAYDLP----- 149 (529)
Q Consensus 83 ~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG-~~L~~e~~~~------~~~~~G~a~~T~~~~L~----- 149 (529)
..|..+.+|++..++||||||||+.+.+||| +.+|++++| ++|+++|++. +.|++|++++|++++|+
T Consensus 29 ~~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~~~~l~~~~~~ 108 (186)
T cd02900 29 ETIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVPLGRALLEKTI 108 (186)
T ss_pred eecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEecCCCCcccccc
Confidence 3444555555555689999999999998877 689999999 6899999652 89999999999999999
Q ss_pred -----CCeEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHc--CCeeeeecccccCCCCCChHHHHHHHHHHHHHHH
Q 009662 150 -----ARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIEN--GLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (529)
Q Consensus 150 -----~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~--~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl 221 (529)
++||||++++++..... ...+.|+.||+++|+.|.++ +++|||||+||||.+|||++++|++|+.+++.|+
T Consensus 109 ~~~~~~~~iIHaPtm~~P~~~~-~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~ 186 (186)
T cd02900 109 YCRWGIPYLIHAPTMRVPSPVI-TGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN 186 (186)
T ss_pred ccccCCCEEEEcCcccCCCCCC-CcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999998866541111 23478999999999999987 8999999999999999999999999999999984
No 13
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.93 E-value=1.4e-25 Score=205.48 Aligned_cols=134 Identities=34% Similarity=0.480 Sum_probs=124.2
Q ss_pred EEEEEEcCcce-eeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCC---CCCCCeEEcccCCCC-CCeEEEEc
Q 009662 84 KIYLWRGNPWN-LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGG---CRTGMAKVTNAYDLP-ARRVIHTV 157 (529)
Q Consensus 84 ~I~i~~GDI~~-~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~---~~~G~a~~T~~~~L~-~k~IIH~V 157 (529)
+|++++|||++ .++|+|||++|+...+++| +.+|++++|++++++|++... +++|++.+|++++++ ++||||++
T Consensus 1 ~i~~~~GDi~~~~~~d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~~~~~~~~~~vih~~ 80 (147)
T cd02749 1 KIKVVSGDITKPLGSDAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKGYNLDGAKYLIHIV 80 (147)
T ss_pred CEEEEECCCCCCCCCCEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECcCCCCCcCCEEEEeC
Confidence 47899999999 9999999999999887765 799999999999999998644 589999999999999 99999999
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCC------ChHHHHHHHHHHH
Q 009662 158 GPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNY------PREPAAHVAIRTV 217 (529)
Q Consensus 158 gP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~------p~~~~A~i~l~ti 217 (529)
+|+|..++..++.+.|++||++||..|.+++++|||||.||||.+|+ |++.++++|++++
T Consensus 81 ~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 81 GPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 99999876556678999999999999999999999999999999999 9999999999886
No 14
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.93 E-value=1.3e-25 Score=202.15 Aligned_cols=129 Identities=32% Similarity=0.473 Sum_probs=117.2
Q ss_pred EEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhH-HHHHHHhC--CCCCCCeEEcccCCCCCCeEEEEcCC
Q 009662 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGL-AEECATLG--GCRTGMAKVTNAYDLPARRVIHTVGP 159 (529)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L-~~e~~~~~--~~~~G~a~~T~~~~L~~k~IIH~VgP 159 (529)
.|++++|||+.+++|||||++|.++.+++| +++|++++|+++ ++++++.. .+++|++++|+++++++++|||+++|
T Consensus 1 ~i~~~~Gdi~~~~~d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~Iih~~~p 80 (133)
T smart00506 1 ILKVVKGDITKPRADAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEGGNLPAKYVIHAVGP 80 (133)
T ss_pred CeEEEeCCCCcccCCEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecCCCCCCCEEEEeCCC
Confidence 378999999999999999999999988765 799999999996 66776543 79999999999999999999999999
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHH
Q 009662 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 213 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~ 213 (529)
+|..++ ....+.|++||++||+.|.+++++||+||.||||++|+|++++++++
T Consensus 81 ~~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 81 RASGHS-NEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred CCCCCC-ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 998764 35578999999999999999999999999999999999999999864
No 15
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.92 E-value=3e-27 Score=265.26 Aligned_cols=173 Identities=22% Similarity=0.154 Sum_probs=156.5
Q ss_pred cccCCCCEEEEEE----cCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhH---HHHHHH-----------------
Q 009662 77 VDHEINSKIYLWR----GNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGL---AEECAT----------------- 131 (529)
Q Consensus 77 ~~~~~n~~I~i~~----GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L---~~e~~~----------------- 131 (529)
..-..+.++.+++ ||||.+++|||||+||++|.+|+| .++|+++||+++ +++|++
T Consensus 469 ~~~~~~~~~~~~~~~~~~dit~~~~d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~ 548 (725)
T PRK13341 469 QLGQEGERLAILRDRLWSDITWQRHDRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLL 548 (725)
T ss_pred HHhhcccHHHHHHHHHhccccccccceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCcccc
Confidence 3334567899999 999999999999999999998876 599999999999 788865
Q ss_pred -------------------hCCCCCCCeEEc------------ccCCCCCCeEEEEcCCCccCcchhhHHHHHHHHHHHH
Q 009662 132 -------------------LGGCRTGMAKVT------------NAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSC 180 (529)
Q Consensus 132 -------------------~~~~~~G~a~~T------------~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~ 180 (529)
+|+|++|++++| ++|+|+|+||||+|||+|..+.. ...|.+||+++
T Consensus 549 ~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~---~~~l~~~~~~~ 625 (725)
T PRK13341 549 DGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE---DELLYKALYSA 625 (725)
T ss_pred ccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc---cchhHHHHHHH
Confidence 599999999999 99999999999999999987654 46899999999
Q ss_pred HHHHHHcCCe----------eeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEecCchhHHHHHHhccc
Q 009662 181 LELLIENGLK----------SIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPL 250 (529)
Q Consensus 181 L~~a~e~~~~----------SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~~~~~~~~y~~~l~~ 250 (529)
|++|++++++ |||||+|+||++|||.+.++++++++|++|+..+++ ..+++|+.+++.++..|+..+..
T Consensus 626 L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 704 (725)
T PRK13341 626 LLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIKRWLAQGPD-YRQALATNLEEERICNLDEELTR 704 (725)
T ss_pred HHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHHHHHhcCCc-HHHHHhccCCHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999998765 56777999999999999999877
Q ss_pred cCC
Q 009662 251 YFP 253 (529)
Q Consensus 251 yfp 253 (529)
+|-
T Consensus 705 ~~~ 707 (725)
T PRK13341 705 ILG 707 (725)
T ss_pred Hhh
Confidence 663
No 16
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.91 E-value=2.2e-24 Score=189.74 Aligned_cols=113 Identities=35% Similarity=0.532 Sum_probs=106.7
Q ss_pred EEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEEcccCCCCCCeEEEEcCCCccCcchhhHHHHHHH
Q 009662 101 VNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSH 175 (529)
Q Consensus 101 VNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~T~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~ 175 (529)
||++|..+.+++| +++|++++|++++++|+++ +++++|++++|++++|++++|||+|+|.|+........+.|++
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~ 80 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALES 80 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeecCCCccccceEEEecceeccccccccHHHHHH
Confidence 8999999998876 7999999999999999876 6799999999999999999999999999987666677899999
Q ss_pred HHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHH
Q 009662 176 CYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 213 (529)
Q Consensus 176 ~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~ 213 (529)
||++||+.|.+++++||+||+||||++|+|++++|++|
T Consensus 81 ~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 81 AYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 99999999999999999999999999999999999986
No 17
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.88 E-value=4.9e-23 Score=189.24 Aligned_cols=130 Identities=31% Similarity=0.592 Sum_probs=107.4
Q ss_pred cceeecccCCCCCeEEEEEeeeecCCcCCHHHHHHHHHHHh-hcccCCCEEEEEEcCCCccCCCCCHHHHHHHHHHHhHH
Q 009662 396 KIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEF-EPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRK 474 (529)
Q Consensus 396 ~~ly~~G~D~~GRpVvvi~~~~~~~~~~d~e~ll~yvi~~L-e~~~~~~yviVyd~t~~s~~~~~~ls~lk~~~~~l~~~ 474 (529)
.++|.+|+|++||||+++.++++ +...|+++++.|++.++ +.+..++|++|||+++++..+.|+++|++++++++++.
T Consensus 2 ~~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~~~ 80 (149)
T PF13716_consen 2 IFFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLSEEVVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLLPRK 80 (149)
T ss_dssp SE-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH-TTTTTS-EEEEEE-TT--GGG---HHHHHHTTTSS-HH
T ss_pred eEEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhhHHhcCCCEEEEEEcCCCccccCCchHHHHHHHHHHHHH
Confidence 46789999999999999999999 66669999999999999 88889999999999999999999999999999999999
Q ss_pred HhcccceEEEEcCChHHHHHH-HHhhhcccccc-cceEEEEcChhhhccCCcCCC
Q 009662 475 HQRNLHAIYVLHPTFHLKATI-FTLQLLVDNVV-CLKLFLIETYYFFHPKGRGEK 527 (529)
Q Consensus 475 ~~knLk~iyivhp~~~~k~~~-~~~~~Fls~K~-~~KI~~v~sl~eL~~~~~~~~ 527 (529)
+++||+++|||||+|++|.++ .+.+++.++|+ ++||+|+++++||... ++.+
T Consensus 81 ~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~~-i~~~ 134 (149)
T PF13716_consen 81 YKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSKH-IDPS 134 (149)
T ss_dssp HHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGGT-SGGG
T ss_pred HhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHhh-CCHH
Confidence 999999999999999999999 66688889999 9999999999999998 7754
No 18
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.84 E-value=3.4e-21 Score=196.04 Aligned_cols=134 Identities=25% Similarity=0.418 Sum_probs=124.7
Q ss_pred hHHHHhc--cceeecc--cCCCCCeEEEEEeeeecC-CcCCHHHHHHHHHHHhhcccCCCEEEEEEcCCCccCCCCCHHH
Q 009662 389 LSEIAEM--KIVYRGG--VDSEGRPVMVVVGAHFLL-RCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGW 463 (529)
Q Consensus 389 l~~i~~~--~~ly~~G--~D~~GRpVvvi~~~~~~~-~~~d~e~ll~yvi~~Le~~~~~~yviVyd~t~~s~~~~~~ls~ 463 (529)
|.+++++ +++...| +|++||+|+++.++++++ +++|.-+++.|.++++|.+++++|++||+|.|....|.++++|
T Consensus 71 fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~DYt~vYfh~gl~s~nkp~l~~ 150 (467)
T KOG4406|consen 71 FYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVENDYTLVYFHHGLPSDNKPYLQL 150 (467)
T ss_pred HHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhccceeeehhcCCcccccchHHH
Confidence 7777765 6665543 599999999999999998 4778778999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccccccceEEEEcChhhhccC
Q 009662 464 MRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLFLIETYYFFHPK 522 (529)
Q Consensus 464 lk~~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~~v~sl~eL~~~ 522 (529)
+.+.|.-++++|++|+|++|+|||+|+.|++|++++||+|.||.+||+|+++++||...
T Consensus 151 l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~lseL~~~ 209 (467)
T KOG4406|consen 151 LFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNSLSELFEA 209 (467)
T ss_pred HHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeehHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999876
No 19
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.80 E-value=3.7e-19 Score=162.11 Aligned_cols=134 Identities=14% Similarity=0.080 Sum_probs=111.2
Q ss_pred EEEEEEcCccee-eccEEEEcCCCCCCCCCc-HHHHHHh---hChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcC
Q 009662 84 KIYLWRGNPWNL-EVDTVVNSTNENLDEAHS-SPGLHAA---AGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVG 158 (529)
Q Consensus 84 ~I~i~~GDI~~~-~vDaIVNsaN~~l~~~~~-~~aI~~~---aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~Vg 158 (529)
+|.+++|||++. ++|+|||++|..+.+|+| +.+|.++ +..++++.|++.+.+..|.++++.++++++++|+|+++
T Consensus 1 ~i~~v~GDi~~~~~~d~Iv~~~N~~~~mG~Gia~~i~~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~I~~~~t 80 (140)
T cd02901 1 MITYVKGDLLHAPEAAALAHAVNCDGVMGKGIALQFKEKFPEFVEEYRAACKKKELLLGGVAVLERGSSLVSRYIYNLPT 80 (140)
T ss_pred CeEEEcCccccCCCCCEEEEEEcCCCccChHHHHHHHHHCcHHHHHHHHHHHhcCCCCCcEEEEecCCCCCceEEEEeec
Confidence 478999999999 999999999999988866 6888886 33366666776554433444556778899999999999
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHH
Q 009662 159 PKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRR 219 (529)
Q Consensus 159 P~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~ 219 (529)
|.+.... ...+.|++|++++++.|.+++++||+||.||||.+|+|++++++++.+.+.+
T Consensus 81 ~~~~~~~--~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~ 139 (140)
T cd02901 81 KVHYGPK--SRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD 139 (140)
T ss_pred cCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence 9886643 2357999999999999999999999999999999999999999998887653
No 20
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.79 E-value=5.5e-19 Score=162.77 Aligned_cols=126 Identities=20% Similarity=0.403 Sum_probs=116.2
Q ss_pred ccCCCCCeEEEEEeeeecCCcCCHHHHHHHHHHHhhcccC--------CCEEEEEEcCCCccCCCCCHHHHHHHHHHHhH
Q 009662 402 GVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQ--------KPYSIVYFHSAASLQLQPDLGWMRRLQQVLGR 473 (529)
Q Consensus 402 G~D~~GRpVvvi~~~~~~~~~~d~e~ll~yvi~~Le~~~~--------~~yviVyd~t~~s~~~~~~ls~lk~~~~~l~~ 473 (529)
|+|++||||+++++++++++..+.+.++++++.++|..+. ..+++|+|.++++..+ ++++++|++++.++.
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~-~~~~~lk~~~~~~~~ 92 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN-PDLSVLRKILKILQD 92 (158)
T ss_pred CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc-ccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999987764 3589999999998765 899999999999999
Q ss_pred HHhcccceEEEEcCChHHHHHHHHhhhcccccccceEEEEcC--hhhhccCCcCCCCC
Q 009662 474 KHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLFLIET--YYFFHPKGRGEKLL 529 (529)
Q Consensus 474 ~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~~v~s--l~eL~~~~~~~~ll 529 (529)
.||+||+.+||||||++++++|+++++|+++++++||+++++ .++|... ++++.|
T Consensus 93 ~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~-i~~~~l 149 (158)
T smart00516 93 HYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEY-IDPEQL 149 (158)
T ss_pred HhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhh-CCHhhC
Confidence 999999999999999999999999999999999999999998 8889887 776643
No 21
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.74 E-value=1.2e-17 Score=152.03 Aligned_cols=133 Identities=23% Similarity=0.414 Sum_probs=116.6
Q ss_pred cceeecccCCCCCeEEEEEeeeecC-CcCCHHHHHHHHHHHhhcccC------CCEEEEEEcCCCccCCC-CCHHHHHHH
Q 009662 396 KIVYRGGVDSEGRPVMVVVGAHFLL-RCLDLERFVLYVVKEFEPLIQ------KPYSIVYFHSAASLQLQ-PDLGWMRRL 467 (529)
Q Consensus 396 ~~ly~~G~D~~GRpVvvi~~~~~~~-~~~d~e~ll~yvi~~Le~~~~------~~yviVyd~t~~s~~~~-~~ls~lk~~ 467 (529)
++.+.+|.|++||||++++.++.+. ...+.+.++++++..+|..+. ..+++|+|.++.+..+. +.++++|++
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~ 88 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI 88 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHH
Confidence 5566667799999999999996554 345668899999999987764 36999999999987754 488999999
Q ss_pred HHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccccccceEEEEcC-hhhhccCCcCCCCC
Q 009662 468 QQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLFLIET-YYFFHPKGRGEKLL 529 (529)
Q Consensus 468 ~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~~v~s-l~eL~~~~~~~~ll 529 (529)
+++++..||+||+.+||||||++++++|+++++|+++++++||+++++ +++|... ++++.|
T Consensus 89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~L~~~-i~~~~L 150 (157)
T cd00170 89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKY-IDKEQL 150 (157)
T ss_pred HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHHHHhh-CChhhC
Confidence 999999999999999999999999999999999999999999999999 9999988 887654
No 22
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=99.70 E-value=9.8e-17 Score=161.95 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=128.8
Q ss_pred HHHHHHHhcCCC------hHHHHhccceeecccCCCCCeEEEEEeeeecCCcCCHHHHHHHHHHHhhccc------CCCE
Q 009662 377 HSRYLAKANSLN------LSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLI------QKPY 444 (529)
Q Consensus 377 ~~~~l~~~~~~d------l~~i~~~~~ly~~G~D~~GRpVvvi~~~~~~~~~~d~e~ll~yvi~~Le~~~------~~~y 444 (529)
.-.|.+....+. +..=.+.|..|..|.|+.||||+|++++.-.+...+.+.+.++++.+||..+ ++.+
T Consensus 73 tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~ 152 (324)
T KOG1470|consen 73 TLKWRRSFGPEEVIEADEVAAELETGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPPGQEQF 152 (324)
T ss_pred HhHHHHhcCCccccCHHHHHHHhhcCcEEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCcceE
Confidence 345666544322 4444468999999999999999999999877777888888888888887654 3569
Q ss_pred EEEEEcCCCccCCCCCHHHHHHHHHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccccccceEEEEcChhhhccCCc
Q 009662 445 SIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLFLIETYYFFHPKGR 524 (529)
Q Consensus 445 viVyd~t~~s~~~~~~ls~lk~~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~~v~sl~eL~~~~~ 524 (529)
++++|.+++++.| ++++.++-++.+|+.+||+||...+++||||+|..+|++++||++++++.||+|+.+-++|... +
T Consensus 153 ~~L~D~~~fs~sN-~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~~~l~~~-~ 230 (324)
T KOG1470|consen 153 VWLFDLTGFSMSN-PDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPKDDLSEY-F 230 (324)
T ss_pred EEEEecccCcccC-CCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecChhHHHhh-C
Confidence 9999999999986 8999999999999999999999999999999999999999999999999999999998888877 7
Q ss_pred CCC
Q 009662 525 GEK 527 (529)
Q Consensus 525 ~~~ 527 (529)
|++
T Consensus 231 d~~ 233 (324)
T KOG1470|consen 231 DES 233 (324)
T ss_pred Ccc
Confidence 765
No 23
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.66 E-value=1.1e-16 Score=147.47 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=108.5
Q ss_pred HHHhccceeecccCCCCCeEEEEEeeeecCCcCCHHHHHHHHHHHhhccc--------CCCEEEEEEcCCCccCCCC--C
Q 009662 391 EIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLI--------QKPYSIVYFHSAASLQLQP--D 460 (529)
Q Consensus 391 ~i~~~~~ly~~G~D~~GRpVvvi~~~~~~~~~~d~e~ll~yvi~~Le~~~--------~~~yviVyd~t~~s~~~~~--~ 460 (529)
++.+.++.|..|+|++||||++++.+++++.....+.++++++..+|..+ ...+++|+|.++++..+.. .
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~ 81 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWP 81 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHH
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccch
Confidence 46778999999999999999999999999988888888888888887654 1358999999999865322 2
Q ss_pred HHHHHHHHHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccccccceEEEEcCh---hhhccCCcCCCCC
Q 009662 461 LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLFLIETY---YFFHPKGRGEKLL 529 (529)
Q Consensus 461 ls~lk~~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~~v~sl---~eL~~~~~~~~ll 529 (529)
.+.++.+.++++..||.+++.+||+|+|++++++|+++++|+++++++||+++.+. ++|... ++++.|
T Consensus 82 ~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~-i~~~~l 152 (159)
T PF00650_consen 82 ISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEY-IDPEQL 152 (159)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCC-STGGGS
T ss_pred hhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhh-CCHhHC
Confidence 99999999999999999999999999999999999999999999999999999654 468887 776643
No 24
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.40 E-value=5.7e-12 Score=116.75 Aligned_cols=130 Identities=12% Similarity=0.034 Sum_probs=106.0
Q ss_pred EEEEEEcCccee---eccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh---CCCCCCCeEE-cccCCCCCCeEEE
Q 009662 84 KIYLWRGNPWNL---EVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL---GGCRTGMAKV-TNAYDLPARRVIH 155 (529)
Q Consensus 84 ~I~i~~GDI~~~---~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~---~~~~~G~a~~-T~~~~L~~k~IIH 155 (529)
.|.+++|||++. ..++|||++|....+|+| +.+|.++. |++.++.++. +..+.|++.+ |.+++.+.++|+|
T Consensus 2 ~i~~v~GDl~~~~~~~~~~i~h~~N~~g~mG~GIA~~~k~~~-P~~~~~y~~~~~~~~~~lG~~~~~~~~~~~~~~~I~n 80 (154)
T PHA02595 2 IVDYIKGDIVALFLQGKGNIAHGCNCFHTMGSGIAGQLAKAF-PQILEADKLTTEGDVEKLGTFSVWEKYVGGHKAYCFN 80 (154)
T ss_pred eEEEECCcccccccCCCceEEEeeCCCCcCChHHHHHHHHHc-ChHHHHHHHHhcCCccccceEEEEEeeccCCCEEEEE
Confidence 478899999877 566999999999998877 57776666 6787777654 4677899966 5667778899999
Q ss_pred EcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCC-eeeeecccccCCCCCChHHHHHHHHHH
Q 009662 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGL-KSIAMGCIYTEAKNYPREPAAHVAIRT 216 (529)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~-~SIAfP~i~tG~~g~p~~~~A~i~l~t 216 (529)
..+- |+.+.. ..-..|++|+++..+.+.++++ .|||||.||||++|.|++.+..++.+.
T Consensus 81 l~tq-~~~~~~-~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~ 140 (154)
T PHA02595 81 LYTQ-FDPGPN-LEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA 140 (154)
T ss_pred Eecc-CCCCCC-CcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh
Confidence 9765 765543 2246799999999999999998 999999999999999999988887654
No 25
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=99.18 E-value=6.1e-11 Score=122.38 Aligned_cols=131 Identities=19% Similarity=0.202 Sum_probs=104.0
Q ss_pred eeecccCCCCCeEEEEEeeeecCCc----CCHHHHHHHHHHHh--------hc------ccCCCEEEEEEcCCCccC--C
Q 009662 398 VYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEF--------EP------LIQKPYSIVYFHSAASLQ--L 457 (529)
Q Consensus 398 ly~~G~D~~GRpVvvi~~~~~~~~~----~d~e~ll~yvi~~L--------e~------~~~~~yviVyd~t~~s~~--~ 457 (529)
....|+|+.|+||++-..+..+... ....+.+++.+.-+ +. .....++.|+|..|++.. .
T Consensus 97 ~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~ 176 (317)
T KOG1471|consen 97 QGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLL 176 (317)
T ss_pred ccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHH
Confidence 4446999999999999888886543 23333333333222 11 123558999999999877 3
Q ss_pred CCCHHHHHHHHHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccccccceEE-E-EcChhhhccCCcCCCCC
Q 009662 458 QPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLF-L-IETYYFFHPKGRGEKLL 529 (529)
Q Consensus 458 ~~~ls~lk~~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~-~-v~sl~eL~~~~~~~~ll 529 (529)
.+.++.++++..+++..||++++++||||+|++|.++|++++||+++|+++||+ + .++.++|.+. ++++.|
T Consensus 177 ~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~-i~~~~L 249 (317)
T KOG1471|consen 177 KPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKY-IPPEVL 249 (317)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhh-CCHhhC
Confidence 588999999999999999999999999999999999999999999999999999 3 4578889888 887654
No 26
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=98.41 E-value=1.2e-06 Score=87.26 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=84.0
Q ss_pred EEEEEEcCccee-------------eccEEEEcCCCCCCCCCc-HHHHHHhhCh-hHHHHHHH-h--CCCCCCCeEEccc
Q 009662 84 KIYLWRGNPWNL-------------EVDTVVNSTNENLDEAHS-SPGLHAAAGP-GLAEECAT-L--GGCRTGMAKVTNA 145 (529)
Q Consensus 84 ~I~i~~GDI~~~-------------~vDaIVNsaN~~l~~~~~-~~aI~~~aG~-~L~~e~~~-~--~~~~~G~a~~T~~ 145 (529)
.+.++.|++..+ .+||||.|+|+.--++|| ..+|.++-|. .++.-+++ + +..++|.+-+..-
T Consensus 43 ~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l~~~y~pvGs~tvIdL 122 (280)
T PF14519_consen 43 YVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQLGERYHPVGSCTVIDL 122 (280)
T ss_dssp -EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHTTTS---TT--EEEEG
T ss_pred eeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHHhccccCCCeeEEEEC
Confidence 378888887644 388999999998777777 5788887655 44444554 2 2356787776543
Q ss_pred ----------CCCCCCeEEEEcC---C---CccCcch-hhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHH
Q 009662 146 ----------YDLPARRVIHTVG---P---KYAVKYH-TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREP 208 (529)
Q Consensus 146 ----------~~L~~k~IIH~Vg---P---~~~~~~~-~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~ 208 (529)
.+-.++||||+-. | .|..... ...-+.+.++++|.|..+. ..+.+|.+|.||||..|+|++.
T Consensus 123 ~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~~ 201 (280)
T PF14519_consen 123 PKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPEI 201 (280)
T ss_dssp GGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HHH
T ss_pred chhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHHH
Confidence 2345789999854 3 2322111 1123567788999887664 5699999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009662 209 AAHVAIRTVRRFLEK 223 (529)
Q Consensus 209 ~A~i~l~ti~~fl~~ 223 (529)
+|+.|+-|++-|...
T Consensus 202 sAk~M~fAl~l~~l~ 216 (280)
T PF14519_consen 202 SAKQMAFALRLYNLQ 216 (280)
T ss_dssp HHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHhH
Confidence 999999999999754
No 27
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=97.99 E-value=0.00018 Score=66.44 Aligned_cols=127 Identities=10% Similarity=0.020 Sum_probs=92.4
Q ss_pred EEEEEcCcceeecc-----EEEEcCCCCCCCC-Cc-HHHHHHhhChhHHHH---HHHhCCCCCCCeEEcccCC----CC-
Q 009662 85 IYLWRGNPWNLEVD-----TVVNSTNENLDEA-HS-SPGLHAAAGPGLAEE---CATLGGCRTGMAKVTNAYD----LP- 149 (529)
Q Consensus 85 I~i~~GDI~~~~vD-----aIVNsaN~~l~~~-~~-~~aI~~~aG~~L~~e---~~~~~~~~~G~a~~T~~~~----L~- 149 (529)
|+.++||++....+ +||+..|..-..| || +.+|.++. |+..+. |.+.+.+..|++.+.+... ..
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~~~~dl~LG~~~li~v~~~~~~~~~ 80 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAGKMKDLHLGDLHLFPIDDKNSRLKG 80 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHHhcCCCccccEEEEEeccccCCCCC
Confidence 78899999998655 9999999988766 34 67776654 544444 4445667789998876422 11
Q ss_pred CCeEEEEcCCCccCc--chhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHH
Q 009662 150 ARRVIHTVGPKYAVK--YHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 213 (529)
Q Consensus 150 ~k~IIH~VgP~~~~~--~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~ 213 (529)
..+|...++..+..+ +..-.-..|..|+.++-..|.+ +-.||.+|-|++|.+|.+.+..-+++
T Consensus 81 ~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li 145 (152)
T cd03331 81 PDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLI 145 (152)
T ss_pred CeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHH
Confidence 358888888876554 2233467888888888887765 45889999999999999999755543
No 28
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=97.11 E-value=0.003 Score=63.58 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=99.0
Q ss_pred CCEEEEEEcCccee----------eccEEEEcCCCCCCCCC---cH----HHHHHhhC--hhHH--HHHH-Hh----CCC
Q 009662 82 NSKIYLWRGNPWNL----------EVDTVVNSTNENLDEAH---SS----PGLHAAAG--PGLA--EECA-TL----GGC 135 (529)
Q Consensus 82 n~~I~i~~GDI~~~----------~vDaIVNsaN~~l~~~~---~~----~aI~~~aG--~~L~--~e~~-~~----~~~ 135 (529)
..+|.++.+|.... .-=+|.|.||..--.|| |+ .+|.+..+ +.|. .+.- .. .++
T Consensus 55 ~t~i~V~~~dtl~aA~~L~~~~~~~~v~vLNfASa~~PGGG~l~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~r~~~~pl 134 (266)
T TIGR02452 55 RTELKVVNESTLHAAVRLKESYFAGKVALLNFASAKNPGGGFLNGAQAQEESLCRASALYPCLIKFNEYYEFHRHQRSPL 134 (266)
T ss_pred CceEEEEcCCHHHHHHHHHhhccCCCeEEEeccCcCCCCCCcccCccchHHHHHHhccHHHHHhcchhHhhhhcccCCCC
Confidence 45799999984321 12389999988655443 22 35655543 2231 1111 00 133
Q ss_pred CCCCeEEccc--------CC-CCCC---eEEEEcCCCccC-----cc-hhhHHHHHHHHHHHHHHHHHHcCCeeeeeccc
Q 009662 136 RTGMAKVTNA--------YD-LPAR---RVIHTVGPKYAV-----KY-HTAAENALSHCYRSCLELLIENGLKSIAMGCI 197 (529)
Q Consensus 136 ~~G~a~~T~~--------~~-L~~k---~IIH~VgP~~~~-----~~-~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i 197 (529)
.+-.++.++. ++ |.-. -||=+..|++.. +. ..+..+.|..-++.+|..|..+|.+++.+.+.
T Consensus 135 ~~~~~IYSP~V~vFR~d~g~~l~~p~~vsvIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~ 214 (266)
T TIGR02452 135 YSDRAIYSPNVPVFRNDDGDLLNEPFLASFITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAW 214 (266)
T ss_pred CCCceEECCCcEEEECCCCCcccCCceeeEEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 3333333322 22 3221 256666676641 11 22446789999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEecCch
Q 009662 198 YTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTAS 239 (529)
Q Consensus 198 ~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~~~~ 239 (529)
|||.|+-|+.++|++..+-+.. -......++.|+|.+.+..
T Consensus 215 GCG~f~N~p~~VA~~f~evL~~-~~ef~g~F~~VvFAI~d~~ 255 (266)
T TIGR02452 215 GCGVFGNDPAEVAKIFHDLLSP-GGIFKGRIKEVVFAILDRH 255 (266)
T ss_pred cccccCCCHHHHHHHHHHHhcc-CccccCceeEEEEEEeCCC
Confidence 9999999999999998887761 0112357899999999743
No 29
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=95.76 E-value=0.062 Score=58.66 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=84.8
Q ss_pred CCCCCeEEcccCCCCC-CeEEEEcCCC-ccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCCh-----H
Q 009662 135 CRTGMAKVTNAYDLPA-RRVIHTVGPK-YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPR-----E 207 (529)
Q Consensus 135 ~~~G~a~~T~~~~L~~-k~IIH~VgP~-~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~-----~ 207 (529)
+.+|++.+|+=.||.. ..|+|-|.-. ...+. -.+..-+...+||+|+.|..+++.+|.+|.+-+....-.. -
T Consensus 372 l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~-~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~ 450 (510)
T PF10154_consen 372 LKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSN-INSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCL 450 (510)
T ss_pred CCCCceEEecccCcccceEEEEEEecCccccCC-CCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHH
Confidence 6889999999999994 5678888422 22211 1234567789999999999999999999999887543222 1
Q ss_pred HHHHHHHHHHHHHHHHcC----CCceEEEEEecCch---hHHHHHHhccccCC
Q 009662 208 PAAHVAIRTVRRFLEKQK----DKISAVVFCTTTAS---DTEIYKRLLPLYFP 253 (529)
Q Consensus 208 ~~A~i~l~ti~~fl~~~~----~~i~~V~fv~~~~~---~~~~y~~~l~~yfp 253 (529)
.=|+..++.|+-|+-... ....+|.|++-..- .+..+...++..|.
T Consensus 451 ~Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~fr 503 (510)
T PF10154_consen 451 KRAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIFR 503 (510)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhhc
Confidence 347788999999998743 34578999887643 34455666777765
No 30
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.63 E-value=0.068 Score=51.44 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEecCc--hhHHHHH
Q 009662 168 AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTA--SDTEIYK 245 (529)
Q Consensus 168 ~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~~~--~~~~~y~ 245 (529)
+..+.|..-.+.+|.+|..++.+.+.+-+-|||+|+-.+..+|+++.+.+..=.+... .++.|+|.+.|. ....+|+
T Consensus 197 ~i~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g-~fkhv~FavlD~n~~~~~iFr 275 (285)
T COG4295 197 EIREALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLG-DFKHVVFAVLDRNMTIVNIFR 275 (285)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhc-ccceEEEEEecCCchHHHHHH
Confidence 4567899999999999999999999999999999999999999999988877655544 578899999974 4567888
Q ss_pred Hhccc
Q 009662 246 RLLPL 250 (529)
Q Consensus 246 ~~l~~ 250 (529)
+.+..
T Consensus 276 ~ele~ 280 (285)
T COG4295 276 KELEY 280 (285)
T ss_pred HHHHh
Confidence 88763
No 31
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]
Probab=91.30 E-value=0.098 Score=63.40 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=107.4
Q ss_pred CCChHHHHhccceeecccCCCCCeEEEEEeeeecCCcCCHHHHHHHHHHHhhcccCCCEEEEEEcCCCccCCCCCHHHHH
Q 009662 386 SLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMR 465 (529)
Q Consensus 386 ~~dl~~i~~~~~ly~~G~D~~GRpVvvi~~~~~~~~~~d~e~ll~yvi~~Le~~~~~~yviVyd~t~~s~~~~~~ls~lk 465 (529)
.+.|.-+++.-.+|+.| .++|-|+++++++++-.+..+-+.++.++..++.+...-++.++.|.|.....+..--++++
T Consensus 1552 Ke~fitL~~~i~~~~~G-sen~~k~~~lvs~r~fl~~~s~~il~~l~~L~~kp~~hf~~evreD~T~~~~d~sfltsf~~ 1630 (2724)
T KOG1826|consen 1552 KEEFITLAKVIQFYANG-SENGLKNFYLVSRRKFLKECSDDILIFLVELCLKPKVHFPGEVREDPTPIEFDYSFLTSFLY 1630 (2724)
T ss_pred hhHHHHHHHHHHHHHhh-hhccCcchhhHhHHHHHhhcCcHHHHHHHHHHcCccccCcceeeecCCcCCccHHHHHHHHh
Confidence 34466677777888999 99999999999998766666666778888899999999999999999887666555566666
Q ss_pred H-HHHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccc-cccceEEEEcChhhhccC
Q 009662 466 R-LQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDN-VVCLKLFLIETYYFFHPK 522 (529)
Q Consensus 466 ~-~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~-K~~~KI~~v~sl~eL~~~ 522 (529)
. ++.+.+....+|-.++|.++.+.|+|....+.-..+.. |--++..|.+..-.|...
T Consensus 1631 ~~~f~vr~~va~e~~~a~~di~~n~~lK~~~~l~driL~~L~~~k~~~f~e~P~kl~e~ 1689 (2724)
T KOG1826|consen 1631 LKWFKVRPHVANENKHAVGDINCNSFLKETTKLHDRILGQLGQPKMEFFNEIPIKLREH 1689 (2724)
T ss_pred hhheeechhhhhhcccccccccchHHHHHHHHHHHHHHhhcCCCceeehhcCCHHHHHH
Confidence 6 78888888999999999999999999998877554443 555677776665555444
No 32
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=30.33 E-value=1.1e+02 Score=30.95 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=29.4
Q ss_pred CCeEEEEcCCCccCc--chhhHHHHHHHHHHHHHHHHHHcCCeeeeec
Q 009662 150 ARRVIHTVGPKYAVK--YHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (529)
Q Consensus 150 ~k~IIH~VgP~~~~~--~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP 195 (529)
|+.|||++.|.-..+ ........=-..-+++|+.|.+.+++.+.+.
T Consensus 67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 789999988743222 2222233334677888888888887777664
No 33
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=29.18 E-value=3.4e+02 Score=27.19 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=54.1
Q ss_pred CCCeEEEEEeeeecC---CcCCHHHHHHHHHHHhhcccCCCEEEEEEcCCCccCCCCCHHHHHHHHHHHhHHH-------
Q 009662 406 EGRPVMVVVGAHFLL---RCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKH------- 475 (529)
Q Consensus 406 ~GRpVvvi~~~~~~~---~~~d~e~ll~yvi~~Le~~~~~~yviVyd~t~~s~~~~~~ls~lk~~~~~l~~~~------- 475 (529)
..|-+|+| || ..-|++++...+...+...-..-|.|.|-.-.- ....++++-|...-
T Consensus 124 ~rRglVLI-----DPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~--------~~~~~~~~~l~~~~~~~~l~~ 190 (245)
T PF04378_consen 124 ERRGLVLI-----DPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDR--------ERVDRFLRALKALGIKKVLRA 190 (245)
T ss_dssp TS-EEEEE----------STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSH--------HHHHHHHHHHHHH-SSE-EEE
T ss_pred CCCeEEEE-----CCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccH--------HHHHHHHHHHHhcCCCCeEEE
Confidence 34556666 54 244788999999999988888889888875321 22333444333322
Q ss_pred -----------hcccceEEEEcCChHHHHHHHHhhhccccccc
Q 009662 476 -----------QRNLHAIYVLHPTFHLKATIFTLQLLVDNVVC 507 (529)
Q Consensus 476 -----------~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~ 507 (529)
.++=-.+.||||||-+...+.-+.+++.+.+.
T Consensus 191 El~v~~~~~~~gm~GSGm~iiNPPw~l~~~l~~~l~~L~~~L~ 233 (245)
T PF04378_consen 191 ELRVRPPDSPRGMNGSGMLIINPPWTLDEELEEILPWLAETLA 233 (245)
T ss_dssp EEE---SS---S--EEEEEEES--TTHHHHHHHHHHHHHHHSS
T ss_pred EEEecCCCCcCceecceEEEEcCCccHHHHHHHHHHHHHHHhC
Confidence 22235799999999998888877776665443
No 34
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=28.69 E-value=1.3e+02 Score=25.32 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCC
Q 009662 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 205 p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
..+.-++.+++.|+.-|+..+. .+-++.+.+.+.+++..+.+....||+
T Consensus 23 d~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 23 TVEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 4566778889999999998764 444455555667888888888888888
No 35
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=28.02 E-value=1.1e+02 Score=31.99 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCccCcc--hhhHHHHHHHHHHHHHHHHHHcC-Ceeeeec
Q 009662 150 ARRVIHTVGPKYAVKY--HTAAENALSHCYRSCLELLIENG-LKSIAMG 195 (529)
Q Consensus 150 ~k~IIH~VgP~~~~~~--~~~~~~~L~~~y~~~L~~a~e~~-~~SIAfP 195 (529)
|+.|+|++.|.--... +.+....=-+...|+|+.|.+-+ ++.|.+.
T Consensus 79 cdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~T 127 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYT 127 (327)
T ss_pred CCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEe
Confidence 9999999999654433 21222223355667777776655 6666664
No 36
>PHA00684 hypothetical protein
Probab=25.44 E-value=1.7e+02 Score=26.15 Aligned_cols=45 Identities=2% Similarity=-0.129 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHH
Q 009662 170 ENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAI 214 (529)
Q Consensus 170 ~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l 214 (529)
...+...+..-+..|.++--.+.-+..||||+.||..++.|....
T Consensus 55 l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~ 99 (128)
T PHA00684 55 LPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFR 99 (128)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHh
Confidence 568999999999999999888899999999999999998776654
No 37
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=25.08 E-value=2.4e+02 Score=24.37 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCCC
Q 009662 204 YPREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPRD 255 (529)
Q Consensus 204 ~p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr~ 255 (529)
-..++-++.+++.+++-|+.... .+-++.+.+.+-.++..+.+....||+..
T Consensus 39 ~~~~~Q~~~~l~ni~~~L~~~G~~~~dvv~~~~yl~d~~~~~~~~~v~~~~f~~~ 93 (121)
T PF01042_consen 39 GDIEEQTRQALDNIERILAAAGASLDDVVKVTVYLTDMSDFPAVNEVWKEFFPDH 93 (121)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTS-GGGEEEEEEEESSGGGHHHHHHHHHHHSTSS
T ss_pred CCHHHHHHHHHHhhhhhhhcCCCcceeEeeeeehhhhhhhhHHHHHHHHHHhccc
Confidence 34566667777788888877653 45555666677788899999999999877
No 38
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.54 E-value=2.6e+02 Score=28.89 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHH
Q 009662 174 SHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHV 212 (529)
Q Consensus 174 ~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i 212 (529)
...++++++.|.+.|++.|.+=++|++++.=|.+++...
T Consensus 97 ~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~L 135 (296)
T PRK14827 97 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFL 135 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHH
Confidence 345778888889999999999999999999998886544
No 39
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=21.39 E-value=1.9e+02 Score=25.78 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhH-HHhcccc-eEEEEcCChHHHHHHHHh-----hhcccccccceEEEEcChhhhccC
Q 009662 461 LGWMRRLQQVLGR-KHQRNLH-AIYVLHPTFHLKATIFTL-----QLLVDNVVCLKLFLIETYYFFHPK 522 (529)
Q Consensus 461 ls~lk~~~~~l~~-~~~knLk-~iyivhp~~~~k~~~~~~-----~~Fls~K~~~KI~~v~sl~eL~~~ 522 (529)
+.-|-.+++.+.- ++..+-| -+.++|.+-+.+-++.++ ..|+++.-.+.++++++++|+..+
T Consensus 64 ~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~ 132 (133)
T PF03641_consen 64 IGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEY 132 (133)
T ss_dssp HHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHH
T ss_pred CchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhh
Confidence 3445566666663 3444455 899999863334444433 579999999999999999998653
No 40
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.21 E-value=2.9e+02 Score=27.41 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHH
Q 009662 172 ALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (529)
Q Consensus 172 ~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl 221 (529)
.=...++++++.|.+.|++.|.+=++|+.++.=|.+++...| .-+.+++
T Consensus 31 ~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm-~L~~~~l 79 (233)
T PRK14841 31 RGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLM-DLFVQMI 79 (233)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHH-HHHHHHH
Confidence 334567788888889999999999999999999988876543 3333333
No 41
>PLN02214 cinnamoyl-CoA reductase
Probab=21.20 E-value=2e+02 Score=29.70 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeec
Q 009662 150 ARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (529)
Q Consensus 150 ~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP 195 (529)
++.|||+++|.... .....+.--....++|+.|.+.+++.|.+.
T Consensus 82 ~d~Vih~A~~~~~~--~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 82 CDGVFHTASPVTDD--PEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred CCEEEEecCCCCCC--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 78999999986432 111112223456788888888888877764
No 42
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=20.87 E-value=1.7e+02 Score=29.07 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCC----ccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeee
Q 009662 149 PARRVIHTVGPK----YAVKYHTAAENALSHCYRSCLELLIENGLKSIAM 194 (529)
Q Consensus 149 ~~k~IIH~VgP~----~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAf 194 (529)
.++.|||++++. +...+..+..+.-.....++|+.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 468999999763 1212222222233346778899999888887777
No 43
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.29 E-value=2.2e+02 Score=24.01 Aligned_cols=50 Identities=8% Similarity=0.155 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCC
Q 009662 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 205 p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
..++-++.+++.|+.-|+..+. .+-++.+.+.+..++..+.+....||+.
T Consensus 26 ~~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~~~f~~ 78 (105)
T cd06150 26 DITGQTRQVLAKIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDAWVPP 78 (105)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHcCC
Confidence 4566677788888998888763 4444555556677888888777888873
No 44
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.21 E-value=1.5e+02 Score=29.53 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHH
Q 009662 171 NALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (529)
Q Consensus 171 ~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl 221 (529)
..=...++++++.|.+.|++.+.+=++|+.++.=|.+++...| +-+.+++
T Consensus 33 ~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm-~L~~~~l 82 (230)
T PRK14837 33 KEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLM-FLIADYL 82 (230)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH-HHHHHHH
Confidence 3444677888888999999999999999999999999876543 3333333
Done!