Query 009662
Match_columns 529
No_of_seqs 352 out of 1621
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x47_A Macro domain-containing 100.0 4E-49 1.4E-53 386.5 19.3 208 20-255 27-235 (235)
2 3q6z_A Poly [ADP-ribose] polym 100.0 8.3E-44 2.8E-48 343.9 19.0 181 73-253 27-214 (214)
3 1spv_A Putative polyprotein/ph 100.0 2.9E-43 9.9E-48 333.7 21.5 173 82-256 2-179 (184)
4 1yd9_A Core histone macro-H2A. 100.0 1E-42 3.6E-47 332.0 20.4 181 70-253 6-192 (193)
5 3q71_A Poly [ADP-ribose] polym 100.0 2.5E-42 8.4E-47 334.4 20.9 178 77-255 33-218 (221)
6 2xd7_A Core histone macro-H2A. 100.0 3.3E-42 1.1E-46 328.7 20.5 175 73-250 9-192 (193)
7 4abl_A Poly [ADP-ribose] polym 100.0 7.7E-42 2.6E-46 322.7 18.1 159 81-250 20-180 (183)
8 3kh6_A Poly [ADP-ribose] polym 100.0 1.1E-39 3.6E-44 311.4 19.5 159 81-250 31-191 (199)
9 2dx6_A Hypothetical protein TT 100.0 8.9E-39 3E-43 296.3 17.1 156 84-248 3-159 (159)
10 1vhu_A Hypothetical protein AF 100.0 9.5E-39 3.2E-43 308.6 15.5 167 81-254 19-203 (211)
11 3eti_A X (ADRP) domain, macro 100.0 5.3E-39 1.8E-43 298.9 11.7 149 83-249 10-167 (168)
12 2acf_A Replicase polyprotein 1 100.0 1.1E-38 3.7E-43 300.7 12.3 162 72-256 9-179 (182)
13 3gpg_A NSP3, non-structural pr 100.0 1.7E-38 5.8E-43 295.1 12.5 155 84-250 11-166 (168)
14 3gqe_A Non-structural protein 100.0 1.9E-37 6.5E-42 288.3 15.6 158 81-250 2-160 (168)
15 3ejg_A Non-structural protein 100.0 2.7E-37 9.4E-42 292.1 12.9 148 81-249 36-192 (193)
16 2vri_A Non-structural protein 100.0 1.5E-35 5.1E-40 278.0 11.0 156 69-249 7-171 (174)
17 3ejf_A Non-structural protein 100.0 1.1E-34 3.8E-39 270.9 13.7 156 76-248 7-175 (176)
18 1njr_A 32.1 kDa protein in ADH 100.0 8E-35 2.7E-39 291.2 7.8 173 82-263 44-254 (284)
19 4gua_A Non-structural polyprot 100.0 2.2E-31 7.6E-36 279.1 15.2 154 84-249 345-499 (670)
20 3pg7_A Neurofibromin; SEC lipi 99.9 8.2E-28 2.8E-32 238.9 12.2 139 386-525 1-140 (256)
21 3peg_A Neurofibromin; SEC14 do 99.9 2.1E-26 7.3E-31 232.0 9.2 153 374-527 5-161 (290)
22 2jyc_A Uncharacterized protein 99.9 2.6E-24 8.7E-29 199.0 14.9 130 81-219 18-150 (160)
23 2eee_A Uncharacterized protein 99.9 2.2E-24 7.6E-29 197.4 13.5 130 81-219 7-139 (149)
24 2fg1_A Conserved hypothetical 99.9 1.4E-22 4.6E-27 187.3 12.1 131 84-218 5-147 (158)
25 3hx3_A Retinaldehyde-binding p 99.8 1.3E-19 4.4E-24 185.6 6.8 140 389-529 135-284 (316)
26 1r5l_A Alpha-TTP, protein (alp 99.7 1.6E-18 5.6E-23 171.9 9.5 141 387-529 74-225 (262)
27 1aua_A Phosphatidylinositol tr 99.7 1.8E-17 6.3E-22 167.7 10.9 138 391-529 99-257 (296)
28 1olm_A SEC14-like protein 2; l 99.7 2.4E-16 8.1E-21 166.4 12.0 129 400-529 88-237 (403)
29 3q8g_A CRAL-TRIO domain-contai 99.7 5.2E-17 1.8E-21 166.5 5.6 137 392-529 115-272 (320)
30 3sig_A PArg, poly(ADP-ribose) 98.7 3.5E-08 1.2E-12 97.9 10.4 167 82-249 64-275 (277)
31 3jru_B Probable cytosol aminop 44.2 3.1E+02 0.011 28.9 14.0 109 83-195 3-113 (490)
32 2vg0_A Short-chain Z-isoprenyl 37.2 46 0.0016 31.5 5.7 51 172-223 31-81 (227)
33 2q3l_A Uncharacterized protein 36.7 1.4E+02 0.0047 25.1 8.3 94 414-517 26-119 (126)
34 3h8g_F Cytosol aminopeptidase; 32.7 3.5E+02 0.012 28.5 12.1 107 84-195 2-111 (497)
35 3k0t_A Endoribonuclease L-PSP, 28.6 1.4E+02 0.0047 25.8 7.0 49 205-253 63-114 (143)
36 1c76_A Staphylokinase, SAK; be 28.0 1.1E+02 0.0037 26.2 5.8 53 401-453 30-85 (136)
37 3l7q_A Putative translation in 27.9 1.4E+02 0.0049 24.9 6.8 50 205-254 45-97 (125)
38 2sak_A Staphylokinase; plasmin 26.3 1.9E+02 0.0064 24.5 6.9 54 400-453 14-70 (121)
39 3kjj_A NMB1025 protein; YJGF p 24.5 1.5E+02 0.005 25.2 6.2 50 205-254 42-94 (128)
40 1qd9_A Purine regulatory prote 24.1 1.8E+02 0.0063 24.1 6.8 50 205-254 44-96 (124)
41 3k12_A Uncharacterized protein 23.9 1.6E+02 0.0055 24.5 6.4 48 207-254 36-86 (122)
42 3ugs_B Undecaprenyl pyrophosph 23.9 2.2E+02 0.0076 26.8 7.8 49 174-223 36-84 (225)
43 3r0p_A L-PSP putative endoribo 22.1 1.8E+02 0.0062 24.3 6.4 49 205-253 48-99 (127)
44 3gtz_A Putative translation in 20.6 1.6E+02 0.0055 24.7 5.7 49 206-254 37-88 (124)
45 3lyb_A Putative endoribonuclea 20.5 75 0.0026 28.4 3.7 48 207-254 70-120 (165)
46 1qah_A Perchloric acid soluble 20.1 2.4E+02 0.0082 23.9 6.8 50 205-254 49-101 (136)
47 2cvl_A TTHA0137, protein trans 20.0 2.5E+02 0.0085 23.3 6.8 50 205-254 44-96 (124)
48 1qu9_A YJGF protein; structura 20.0 1.3E+02 0.0043 25.3 4.9 49 205-253 45-96 (128)
No 1
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=100.00 E-value=4e-49 Score=386.50 Aligned_cols=208 Identities=39% Similarity=0.671 Sum_probs=188.3
Q ss_pred CCeeecCCCCCCchhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCEEEEEEcCcceeeccE
Q 009662 20 DSVVTLDQVPRWSDAEHRLSLDYESEDPSFSNSYFADPLASSSGAESSGNGMVSRFPVDHEINSKIYLWRGNPWNLEVDT 99 (529)
Q Consensus 20 ~~~v~~~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~n~~I~i~~GDI~~~~vDa 99 (529)
+++|++++||+|++..... . +....+.|+++..+|.+|.|++|||+++++||
T Consensus 27 ~~~v~~~~ip~w~~~~~~~-------~---------------------~~~~~~~~~~~~~~~~~i~i~~GDIt~~~vDa 78 (235)
T 2x47_A 27 KDFVRLKKIPTWKEMAKGV-------A---------------------VKVEEPRYKKDKQLNEKISLLRSDITKLEVDA 78 (235)
T ss_dssp SCCEEGGGSCCHHHHHTTC-------C---------------------------CCCCCHHHHTTEEEEESCGGGEESSE
T ss_pred cCccchhhCCcHHHhcccc-------C---------------------ccccCCCCCcccccCCEEEEEeCccCcccCCE
Confidence 5799999999999864410 0 01124578999999999999999999999999
Q ss_pred EEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcCCCccCcchhhHHHHHHHHHH
Q 009662 100 VVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYR 178 (529)
Q Consensus 100 IVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~ 178 (529)
|||+||++|.+||| +++|+++||++|++||+++++|++|++++|+||+|||+||||+|||.|+++......+.|++||+
T Consensus 79 IVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~g~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~ 158 (235)
T 2x47_A 79 IVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYL 158 (235)
T ss_dssp EEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHTSCCCCBTCEEEEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHH
T ss_pred EEEecCcccCCccHHHHHHHHHhCHHHHHHHHHhCCCCCCceEEecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHH
Confidence 99999999998876 69999999999999999999999999999999999999999999999987555556789999999
Q ss_pred HHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEecCchhHHHHHHhccccCCCC
Q 009662 179 SCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRD 255 (529)
Q Consensus 179 ~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~~~~~~~~y~~~l~~yfpr~ 255 (529)
+||++|.+++++|||||+||||++|||++++|++|++++++|++.++.++++|+||++++.++++|+++|+.||||.
T Consensus 159 ~~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~l~~V~fv~f~~~~~~~y~~~l~~~fp~~ 235 (235)
T 2x47_A 159 SSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRLPHYFPVA 235 (235)
T ss_dssp HHHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEEECSHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999887779999999999999999999999999984
No 2
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=8.3e-44 Score=343.89 Aligned_cols=181 Identities=22% Similarity=0.322 Sum_probs=169.1
Q ss_pred CCcccccCCCCEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEEcccCC
Q 009662 73 SRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYD 147 (529)
Q Consensus 73 ~~f~~~~~~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~T~~~~ 147 (529)
..|.+....+.+|.+|+|||+++++|||||+||++|.+++| +++|+++||++|++||+++ ++|++|++++|++|+
T Consensus 27 ~~~~~~~~~g~~I~v~~GDIt~~~vDaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~~~ 106 (214)
T 3q6z_A 27 CFSRTVLAPGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGK 106 (214)
T ss_dssp CCEEEEEETTEEEEEEECCTTSCSSSEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHHHCCCCTTCEEEEECTT
T ss_pred eEEEEEcCCCcEEEEEecccccCcCCEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCeEEEEcCCC
Confidence 45777777899999999999999999999999999998876 6899999999999999886 899999999999999
Q ss_pred CCCCeEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcC--
Q 009662 148 LPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-- 225 (529)
Q Consensus 148 L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~-- 225 (529)
|||+||||+|||.|+.+...+..+.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++|++.++
T Consensus 107 L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~~~~ 186 (214)
T 3q6z_A 107 LPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKDG 186 (214)
T ss_dssp SSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999877655678999999999999999999999999999999999999999999999999999874
Q ss_pred CCceEEEEEecCchhHHHHHHhccccCC
Q 009662 226 DKISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 226 ~~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
.++++|+||+++++++++|++.++.||.
T Consensus 187 ~~l~~V~fv~~d~~~~~~f~~~l~~~f~ 214 (214)
T 3q6z_A 187 HCLKEIYLVDVSEKTVEAFAEAVKTVFK 214 (214)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999883
No 3
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=2.9e-43 Score=333.71 Aligned_cols=173 Identities=33% Similarity=0.539 Sum_probs=158.6
Q ss_pred CCEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEEcccCCCCCCeEEEE
Q 009662 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIHT 156 (529)
Q Consensus 82 n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~T~~~~L~~k~IIH~ 156 (529)
|.+|.+++|||+++++|||||+||++|.+|+| +++|++++|++|++||+++ ++|++|++++|++|+|||+||||+
T Consensus 2 ~~~i~i~~GDIt~~~~DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~e~~~~~~~~g~~~~G~a~iT~~~~L~~k~VIH~ 81 (184)
T 1spv_A 2 KTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHT 81 (184)
T ss_dssp -CCEEEEESCGGGCCCSEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEECCTTSSSSEEEEE
T ss_pred CCeEEEEeCcCCcCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCEEEeeCCCCCCCEEEEE
Confidence 56899999999999999999999999998876 6999999999999999987 899999999999999999999999
Q ss_pred cCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEec
Q 009662 157 VGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTT 236 (529)
Q Consensus 157 VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~ 236 (529)
|||.|+.+... ..+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|++.++ .+++|+||++
T Consensus 82 vgP~~~~~~~~-~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~-~~~~V~~v~~ 159 (184)
T 1spv_A 82 VGPVWRGGEQN-EDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHA-LPEQVYFVCY 159 (184)
T ss_dssp CCCCCSSSSSS-HHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCC-SSSEEEEEES
T ss_pred cCCcccCCCcc-hHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 99999876533 468999999999999999999999999999999999999999999999999999875 5889999999
Q ss_pred CchhHHHHHHhccccCCCCh
Q 009662 237 TASDTEIYKRLLPLYFPRDK 256 (529)
Q Consensus 237 ~~~~~~~y~~~l~~yfpr~~ 256 (529)
+++++++|++.|+.|||+..
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~ 179 (184)
T 1spv_A 160 DEENAHLYERLLTQQGDEEH 179 (184)
T ss_dssp SHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHHHhCCccc
Confidence 99999999999999999764
No 4
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=1e-42 Score=332.04 Aligned_cols=181 Identities=22% Similarity=0.331 Sum_probs=165.3
Q ss_pred CCCCCcccccCCCCEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEEcc
Q 009662 70 GMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTN 144 (529)
Q Consensus 70 ~~~~~f~~~~~~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~T~ 144 (529)
++...++.+..+|.+|.|++|||+++++|||||+||+.|.+++| +++|++++|++|++||+++ ++|++|++++|+
T Consensus 6 ~~~~~~~~~~~~~~~i~i~~GDIt~~~~DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~ 85 (193)
T 1yd9_A 6 GFTVLSTKSLFLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA 85 (193)
T ss_dssp CCCEEEEEECTTSCEEEEECSCGGGCCCSEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE
T ss_pred cceEecccCcCCCCEEEEEeCccCcCcCCEEEECCCccCCCCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec
Confidence 34445566777899999999999999999999999999998876 6999999999999999875 899999999999
Q ss_pred cCCCCCCeEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHc
Q 009662 145 AYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQ 224 (529)
Q Consensus 145 ~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~ 224 (529)
+|+|||+||||+|||.|+.. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|++++
T Consensus 86 ~~~L~~k~VIH~vgP~~~~~---~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~ 162 (193)
T 1yd9_A 86 GHGLPAKFVIHCNSPVWGSD---KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVST 162 (193)
T ss_dssp CTTSSSSEEEEECCCCTTST---THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCcCCc---chHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999753 346899999999999999999999999999999999999999999999999999875
Q ss_pred C-CCceEEEEEecCchhHHHHHHhccccCC
Q 009662 225 K-DKISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 225 ~-~~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
+ .++++|+||+++++++++|++.|..+.+
T Consensus 163 ~~~~l~~V~fv~~~~~~~~~~~~~l~~~~~ 192 (193)
T 1yd9_A 163 MSSSIKTVYFVLFDSESIGIYVQEMAKLDA 192 (193)
T ss_dssp TTCCCCEEEEECCSHHHHHHHHHHHTTTTC
T ss_pred CCCCcCEEEEEECCHHHHHHHHHHHHhhhc
Confidence 4 6789999999999999999999876443
No 5
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=334.38 Aligned_cols=178 Identities=25% Similarity=0.332 Sum_probs=160.8
Q ss_pred cccCCCCEEEEEEcCcceeeccEEEEcCCCCCC-CCCc-HHHHHHhhChhHHHHHHHhC---CCCCCCeEEcccCCCCCC
Q 009662 77 VDHEINSKIYLWRGNPWNLEVDTVVNSTNENLD-EAHS-SPGLHAAAGPGLAEECATLG---GCRTGMAKVTNAYDLPAR 151 (529)
Q Consensus 77 ~~~~~n~~I~i~~GDI~~~~vDaIVNsaN~~l~-~~~~-~~aI~~~aG~~L~~e~~~~~---~~~~G~a~~T~~~~L~~k 151 (529)
+....|.+|.||+|||+++++|||||+||++|. ++|| +++|+++||++|++||++++ +|++|++++|+||+|||+
T Consensus 33 ~~t~~g~~I~i~~GDIt~~~vDAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~~~~~~~G~a~iT~g~~Lp~k 112 (221)
T 3q71_A 33 LVSPGGLQMLLVKEGVQNAKTDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTSSWNLDCR 112 (221)
T ss_dssp EECTTCCEEEEEESCGGGCCSSEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHHTSCCCTTCEEEEECTTSSSS
T ss_pred eeecCCcEEEEEeCcccCCcCCEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhccCCCCCCeEEEEcCCCCCCC
Confidence 456688999999999999999999999999995 4454 69999999999999999874 899999999999999999
Q ss_pred eEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCceE
Q 009662 152 RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKISA 230 (529)
Q Consensus 152 ~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~-~~i~~ 230 (529)
||||+|||.|+.+.. ..++.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++|+++++ .++++
T Consensus 113 ~VIHtVgP~~~~~~~-~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~~~~l~~ 191 (221)
T 3q71_A 113 YVLHVVAPEWRNGST-SSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQLKTLQE 191 (221)
T ss_dssp EEEEECCCCCTTTCH-HHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCCCSSCCE
T ss_pred EEEEeCCCCCcCCCc-hHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 999999999988764 3468999999999999999999999999999999999999999999999999999985 68999
Q ss_pred EEEEecCc--hhHHHHHHhccccCCCC
Q 009662 231 VVFCTTTA--SDTEIYKRLLPLYFPRD 255 (529)
Q Consensus 231 V~fv~~~~--~~~~~y~~~l~~yfpr~ 255 (529)
|+||++++ .++++|++.|...||.+
T Consensus 192 V~fv~f~~d~~~~~~f~~~l~~r~~~~ 218 (221)
T 3q71_A 192 VHFLLHPSDHENIQAFSDEFARRANGN 218 (221)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHC--
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHccCC
Confidence 99999964 45689999988887743
No 6
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=3.3e-42 Score=328.71 Aligned_cols=175 Identities=21% Similarity=0.323 Sum_probs=161.9
Q ss_pred CCcccccCCCCEEEEEEcCccee---eccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEEcc
Q 009662 73 SRFPVDHEINSKIYLWRGNPWNL---EVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTN 144 (529)
Q Consensus 73 ~~f~~~~~~n~~I~i~~GDI~~~---~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~T~ 144 (529)
..++.+..+|.+|.+|+|||+++ ++|||||+||++|.+++| +++|++++|++|++||+++ ++|++|++++|+
T Consensus 9 ~~~~~~~~~~~~i~i~~GDIt~~~~~~~DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~ 88 (193)
T 2xd7_A 9 ILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQ 88 (193)
T ss_dssp EEEEEECTTSCEEEEEECCGGGGGGCCCSEEEEEECTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred EecccccCCCCEEEEEeCcccccCCCCCCEEEECCCccCCCccHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCeEEee
Confidence 34566677899999999999999 999999999999998876 6999999999999999875 899999999999
Q ss_pred cCCCCCCeEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHc
Q 009662 145 AYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQ 224 (529)
Q Consensus 145 ~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~ 224 (529)
+|+|||+||||+|||.|+.+ ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|++++
T Consensus 89 ~~~L~~k~VIH~vgP~~~~~---~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~ 165 (193)
T 2xd7_A 89 SSGLAAKFVIHCHIPQWGSD---KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDS 165 (193)
T ss_dssp CTTSSSSEEEEEECCCTTST---THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCCcCCCc---chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999754 356899999999999999999999999999999999999999999999999999986
Q ss_pred C-CCceEEEEEecCchhHHHHHHhccc
Q 009662 225 K-DKISAVVFCTTTASDTEIYKRLLPL 250 (529)
Q Consensus 225 ~-~~i~~V~fv~~~~~~~~~y~~~l~~ 250 (529)
+ +++++|+||+++++++++|++.|..
T Consensus 166 ~~~~l~~V~fv~~~~~~~~~~~~~l~~ 192 (193)
T 2xd7_A 166 SASSLKNVYFLLFDSESIGIYVQEMAK 192 (193)
T ss_dssp SSCCCCEEEEEECSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHhh
Confidence 5 5789999999999999999998753
No 7
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=100.00 E-value=7.7e-42 Score=322.72 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=151.9
Q ss_pred CCCEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcCC
Q 009662 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGP 159 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~VgP 159 (529)
++.+|++|+|||+++++|||||+||++|.+++| +++|+++||++|++||+++++|++|++++|++|+|||+||||+|||
T Consensus 20 g~~~i~i~~GDIt~~~~DaIVNaaN~~l~~ggGV~~aI~~aaG~~l~~ec~~~~~~~~G~a~iT~~~~L~~k~VIH~vgP 99 (183)
T 4abl_A 20 GSIIFQVASGDITKEEADVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQQAQQRKNDYIITGGGFLRCKNIIHVIGG 99 (183)
T ss_dssp TTEEEEEEESCGGGCBCSEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHHHHSCCSEEEEECTTSBSSEEEEEETT
T ss_pred CCEEEEEEeCcccCcccCEEEECCCCCCCCCccHHHHHHHHhhHHHHHHHHHhcCCCCCceEEecCCCCCCCEEEEeCcH
Confidence 678999999999999999999999999998776 6999999999999999999999999999999999999999999999
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCceEEEEEecCc
Q 009662 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKISAVVFCTTTA 238 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~-~~i~~V~fv~~~~ 238 (529)
.| |++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++++ ..+++|+||++++
T Consensus 100 ~~-----------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~ 168 (183)
T 4abl_A 100 ND-----------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLP 168 (183)
T ss_dssp SC-----------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEEEESCH
T ss_pred HH-----------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCH
Confidence 76 99999999999999999999999999999999999999999999999999885 6899999999999
Q ss_pred hhHHHHHHhccc
Q 009662 239 SDTEIYKRLLPL 250 (529)
Q Consensus 239 ~~~~~y~~~l~~ 250 (529)
+++++|++.|..
T Consensus 169 ~~~~~f~~~l~k 180 (183)
T 4abl_A 169 QVLDVFYANMKK 180 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 8
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=100.00 E-value=1.1e-39 Score=311.36 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=151.8
Q ss_pred CCCEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcCC
Q 009662 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGP 159 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~VgP 159 (529)
.+.+|++|+|||+++++|||||++|+.|.+++| +++|+++||++|++||+++++|++|++++|+||+|||+||||+|||
T Consensus 31 ~~~~i~i~~GDIt~~~vDaIVNaaN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~~G~a~iT~g~~L~~k~VIH~vgp 110 (199)
T 3kh6_A 31 GAITFQVATGDIATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESECAVLAAQPHRDFIITPGGCLKCKIIIHVPGG 110 (199)
T ss_dssp TTEEEEEEESCGGGCCSSEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHHTSCCCSSEEEECTTSSSSEEEEEETT
T ss_pred CCEEEEEEecccccCcCCEEEECCCCCCCCCchHHHHHHHHhhHHHHHHHHHhCCCCCCeEEEecCCCCCCCEEEEeCCC
Confidence 678999999999999999999999999998776 6899999999999999999999999999999999999999999999
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCceEEEEEecCc
Q 009662 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKISAVVFCTTTA 238 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~-~~i~~V~fv~~~~ 238 (529)
. .|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++++ ..+++|+||++++
T Consensus 111 ~-----------~L~~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~ 179 (199)
T 3kh6_A 111 K-----------DVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQHSTPSLKTVKVVIFQP 179 (199)
T ss_dssp S-----------CHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCSSCSCCEEEEEESST
T ss_pred H-----------HHHHHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCH
Confidence 4 399999999999999999999999999999999999999999999999999875 6789999999999
Q ss_pred hhHHHHHHhccc
Q 009662 239 SDTEIYKRLLPL 250 (529)
Q Consensus 239 ~~~~~y~~~l~~ 250 (529)
+++++|++.|..
T Consensus 180 ~~~~~f~~~l~~ 191 (199)
T 3kh6_A 180 ELLNIFYDSMKK 191 (199)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 9
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=100.00 E-value=8.9e-39 Score=296.34 Aligned_cols=156 Identities=28% Similarity=0.394 Sum_probs=147.5
Q ss_pred EEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcCCCcc
Q 009662 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~VgP~~~ 162 (529)
+|++++|||+++++|||||++|+++.+|+| +++|++++|++|++||+++++|++|++++|++|+|||+||||+|||+|+
T Consensus 3 ~i~i~~GDI~~~~~daIVnaaN~~l~~ggGv~~aI~~~~G~~l~~~c~~~g~~~~G~a~it~~~~L~~~~Vih~vgp~~~ 82 (159)
T 2dx6_A 3 RIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDE 82 (159)
T ss_dssp EEEEEESCGGGCCSSEEEEEEETTCCCCSTTHHHHHHHHCTHHHHHHHHHCCCCTTCEEEEECTTSSSSEEEEEEEESSS
T ss_pred EEEEEECcCCcCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHhcCCCCCCcEEEecCCCCCCCEEEEEeCCCCC
Confidence 699999999999999999999999998765 7999999999999999999999999999999999999999999999997
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEecCchhHH
Q 009662 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 242 (529)
Q Consensus 163 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~~~~~~~ 242 (529)
+. ..+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++| +++++|+||++++++++
T Consensus 83 -~~---~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-----~~~~~V~~v~~~~~~~~ 153 (159)
T 2dx6_A 83 -PA---SLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-----PDTLEVTLYGYREEDAE 153 (159)
T ss_dssp -CC---CHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-----CTTCEEEEEESSHHHHH
T ss_pred -Cc---hHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-----CCCCEEEEEECCHHHHH
Confidence 21 3689999999999999999999999999999999999999999999999999 46889999999999999
Q ss_pred HHHHhc
Q 009662 243 IYKRLL 248 (529)
Q Consensus 243 ~y~~~l 248 (529)
+|++.|
T Consensus 154 ~~~~~l 159 (159)
T 2dx6_A 154 AIRRAL 159 (159)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999864
No 10
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=100.00 E-value=9.5e-39 Score=308.64 Aligned_cols=167 Identities=19% Similarity=0.241 Sum_probs=154.2
Q ss_pred CCCEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhC----hhHHHHHHH----hCC--CCCCCeEEcccCCCC
Q 009662 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAG----PGLAEECAT----LGG--CRTGMAKVTNAYDLP 149 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG----~~L~~e~~~----~~~--~~~G~a~~T~~~~L~ 149 (529)
.+.+|.+++|||+++++|||||+||+.|.+++| +++|++++| ++|++||++ +++ |++|++++|++|+||
T Consensus 19 ~~~~i~i~~GDIt~~~vDaIVNaaN~~l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~~~G~a~iT~~~~L~ 98 (211)
T 1vhu_A 19 GDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLE 98 (211)
T ss_dssp TTEEEEEEESCGGGSCCSEEEEEECTTCCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCTTCCEEEECGGGG
T ss_pred CCEEEEEEecccCcCCCCEEEECCCccccCccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCcccCCcEEEEECCCCC
Confidence 456999999999999999999999999998876 699999999 999999988 688 999999999999999
Q ss_pred C---CeEEEEcCC----CccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHH
Q 009662 150 A---RRVIHTVGP----KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLE 222 (529)
Q Consensus 150 ~---k~IIH~VgP----~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~ 222 (529)
| +||||+||| .|.+ ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+
T Consensus 99 ~~g~k~VIH~vgP~~~~~~~~----~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~~~l- 173 (211)
T 1vhu_A 99 ERGIKYVFHTVGPICSGMWSE----ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFK- 173 (211)
T ss_dssp GGTCCEEEEEECCCCTTCCCH----HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHCC-
T ss_pred ccCcCEEEEecCCccccccCc----chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHH-
Confidence 9 999999999 9943 456899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCceEEEEEecCchhHHHHHHhccccCCC
Q 009662 223 KQKDKISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 223 ~~~~~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
++ + +++|+||+++++++++|++.|+.|+.-
T Consensus 174 ~~-~-l~~V~~v~~~~~~~~~~~~~l~~~~~~ 203 (211)
T 1vhu_A 174 GS-A-VKEVALVIYDRKSAEVALKVFERSLEG 203 (211)
T ss_dssp CS-S-CCEEEEEESSHHHHHHHHHHHHHHC--
T ss_pred hC-C-CCEEEEEECCHHHHHHHHHHHHHhhcc
Confidence 44 3 889999999999999999999877653
No 11
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=100.00 E-value=5.3e-39 Score=298.91 Aligned_cols=149 Identities=18% Similarity=0.227 Sum_probs=138.4
Q ss_pred CEEEEEEcCcce----eeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEEcccCCCCCCeE
Q 009662 83 SKIYLWRGNPWN----LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRV 153 (529)
Q Consensus 83 ~~I~i~~GDI~~----~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~T~~~~L~~k~I 153 (529)
.+|.+|+||||+ +++|||||+||++|.+++| +++||++||++|++||+++ ++|++|++++|+|| |||+||
T Consensus 10 ~~i~l~~GDIt~~~~~~~vDaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~g~-l~~~~V 88 (168)
T 3eti_A 10 GKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENV-LEHLSV 88 (168)
T ss_dssp TTEEEEESCHHHHHHHHCCSEEEEEECTTCCCCSTTHHHHHHHTTTHHHHHHHHHHTTSCCCCTTEEEEEEEE-ETTEEE
T ss_pred CeEEEEeCcccccCCCCCCCEEEeCCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEecCC-CCccEE
Confidence 579999999999 8999999999999998775 6999999999999999987 89999999999999 999999
Q ss_pred EEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEE
Q 009662 154 IHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVF 233 (529)
Q Consensus 154 IH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~f 233 (529)
||+|||.|... ..++.|++||++||++ .+|||||+||||++|||++++|++|++++++ ++|+|
T Consensus 89 IHtVgP~~~~~---~~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~---------~~V~~ 151 (168)
T 3eti_A 89 MNAVGPRNGDS---RVEGKLCNVYKAIAKC-----DGKILTPLISVGIFKVKLEVSLQCLLKTVTD---------RDLNV 151 (168)
T ss_dssp EEEECCCTTST---THHHHHHHHHHHHHTS-----CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS---------SCEEE
T ss_pred EEecCCCCCcc---hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc---------CeEEE
Confidence 99999999653 3468999999999985 4799999999999999999999999999987 57999
Q ss_pred EecCchhHHHHHHhcc
Q 009662 234 CTTTASDTEIYKRLLP 249 (529)
Q Consensus 234 v~~~~~~~~~y~~~l~ 249 (529)
|+|+++++++|+++|.
T Consensus 152 v~f~~~~~~~~~~~l~ 167 (168)
T 3eti_A 152 FVYTDQERVTIENFFN 167 (168)
T ss_dssp EECCHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHhc
Confidence 9999999999999874
No 12
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=100.00 E-value=1.1e-38 Score=300.73 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=144.5
Q ss_pred CCCcccccCCCCEEEEEEcCccee----eccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHH----hCCCCCCCeEE
Q 009662 72 VSRFPVDHEINSKIYLWRGNPWNL----EVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECAT----LGGCRTGMAKV 142 (529)
Q Consensus 72 ~~~f~~~~~~n~~I~i~~GDI~~~----~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~----~~~~~~G~a~~ 142 (529)
+..|+.+..+|.+|.||+|||+++ ++|||||+||++|.+|+| +++|+++||++|++||++ .++|++|++++
T Consensus 9 ~~~~~~~~~~~~~i~i~~GDIt~~~~~~~vDAIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~i 88 (182)
T 2acf_A 9 VNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCL 88 (182)
T ss_dssp SCCCCSCEECSSSEEEEESCHHHHHHHHCCSEEEEECCTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEE
T ss_pred ccccccccccCCeEEEEeCcccccccCCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 346888999999999999999999 999999999999998876 699999999999999987 48999999999
Q ss_pred cccCCCCCCeEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHH
Q 009662 143 TNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLE 222 (529)
Q Consensus 143 T~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~ 222 (529)
|++|+|+ ++|||+|||.|+.+. .++.|++||+++ ++++|||||+||||++|||++++|++|++++++
T Consensus 89 T~~~~L~-~~VIH~vgP~~~~~~---~~~~L~~~y~~~------~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~--- 155 (182)
T 2acf_A 89 LSGHNLA-KKCLHVVGPNLNAGE---DIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT--- 155 (182)
T ss_dssp EECTTTC-SEEEEECCCCGGGTC---CTTHHHHHHHGG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS---
T ss_pred eeCCCCC-ceEEEECCCCCCCCc---hHHHHHHHHHHh------cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC---
Confidence 9999996 799999999997653 356899999996 789999999999999999999999999999985
Q ss_pred HcCCCceEEEEEecCchhHHHHHHhccccCCCCh
Q 009662 223 KQKDKISAVVFCTTTASDTEIYKRLLPLYFPRDK 256 (529)
Q Consensus 223 ~~~~~i~~V~fv~~~~~~~~~y~~~l~~yfpr~~ 256 (529)
+|+||+++++ +|+++|+.||||..
T Consensus 156 -------~V~~v~~d~~---~y~~~l~~~~p~~~ 179 (182)
T 2acf_A 156 -------QVYIAVNDKA---LYEQVVMDYLDNLK 179 (182)
T ss_dssp -------EEEEEESCHH---HHHHHHHHHC----
T ss_pred -------cEEEEECCHH---HHHHHHHHhCCCCC
Confidence 7999999644 89999999999874
No 13
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=100.00 E-value=1.7e-38 Score=295.10 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=141.0
Q ss_pred EEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcCCCcc
Q 009662 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~VgP~~~ 162 (529)
...||+||||++++|||||+||++|.+++| +++|+++||++++ .++|++|++++|+++ |+||||+|||.|+
T Consensus 11 ~~~~~~GDIt~~~vDAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----~~~~~~G~a~iT~~~---~k~VIHtVGP~~~ 82 (168)
T 3gpg_A 11 SYRVKRMDIAKNDEECVVNAANPRGLPGDGVCKAVYKKWPESFK-----NSATPVGTAKTVMCG---TYPVIHAVGPNFS 82 (168)
T ss_dssp CC-CEESCGGGCCSSCEEEECCTTCCCCSHHHHHHHHHCGGGGT-----TCCCCTTCEEEEEET---TEEEEEECCCCTT
T ss_pred ceEEEeCcCCcccCCEEEeCCCcccCCCchHHHHHHHHhhHHhh-----cCCCCCCCEEEecCC---CCEEEEeCCCCcC
Confidence 357899999999999999999999998876 6999999999873 789999999999995 9999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEecCchhHH
Q 009662 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 242 (529)
Q Consensus 163 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~~~~~~~ 242 (529)
.+...++++.|++||++||++|.+++++|||||+||||++|||++++|+ +++++++|++. .+++|+||++++++++
T Consensus 83 ~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~---~~~~V~fv~f~~~~~~ 158 (168)
T 3gpg_A 83 NYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDS---TDADVVIYCRDKEWEK 158 (168)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTT---CCSEEEEEESCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccC---CCCEEEEEECCHHHHH
Confidence 8877666789999999999999999999999999999999999999999 88999888754 4789999999999999
Q ss_pred HHHHhccc
Q 009662 243 IYKRLLPL 250 (529)
Q Consensus 243 ~y~~~l~~ 250 (529)
+|++.|..
T Consensus 159 ~y~~~l~~ 166 (168)
T 3gpg_A 159 KISEAIQM 166 (168)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99998863
No 14
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=100.00 E-value=1.9e-37 Score=288.28 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=143.6
Q ss_pred CCCEEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcCC
Q 009662 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGP 159 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~VgP 159 (529)
-+.+|.+|+||||++++|||||+||+.|.+|+| +++|++++|++++ .++|++|++++|++ +|+||||+|||
T Consensus 2 ~~~~i~v~~GDIt~~~vDAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----~~~~~~G~a~iT~~---~~k~VIH~VgP 73 (168)
T 3gqe_A 2 KAPSYHVVRGDIATATEGVIINAANSKGQPGGGVCGALYKKFPESFD-----LQPIEVGKARLVKG---AAKHIIHAVGP 73 (168)
T ss_dssp CCCEEEEEESCGGGCCSSEEEEEECTTSCCTTGGGSHHHHHCGGGCC-----CCCCCTTCEEEECC---TTCCEEEEECC
T ss_pred CCCeEEEEeCcccCcccCEEEeCCCcccCCCccHHHHHHHHhhHHhc-----CCCcCCCcEEEEcC---CCCEEEEcCCC
Confidence 367999999999999999999999999998876 6999999999874 68999999999998 49999999999
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEecCch
Q 009662 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTAS 239 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~~~~ 239 (529)
.|+.+...++++.|++||++||++|.+++++|||||+||||++|||++++|+ ++++|++..++++.+|+||+++++
T Consensus 74 ~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~----~i~~~l~~~~~~~~~V~iv~fd~~ 149 (168)
T 3gqe_A 74 NFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQ----SLNHLLTALDTTDADVAIYCRDKK 149 (168)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHH----HHHHHHHHHTTSCCEEEEEESCHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHH----HHHHHHHHCCCCCCeEEEEEcCHH
Confidence 9998876666789999999999999999999999999999999999999998 456777777777889999999999
Q ss_pred hHHHHHHhccc
Q 009662 240 DTEIYKRLLPL 250 (529)
Q Consensus 240 ~~~~y~~~l~~ 250 (529)
+++.|+..+..
T Consensus 150 ~~~~~~~~~~~ 160 (168)
T 3gqe_A 150 WEMTLKEAVAR 160 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 15
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=100.00 E-value=2.7e-37 Score=292.10 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=136.9
Q ss_pred CCCEEEEEEcCcce----eeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEEcccCCCCCC
Q 009662 81 INSKIYLWRGNPWN----LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPAR 151 (529)
Q Consensus 81 ~n~~I~i~~GDI~~----~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~T~~~~L~~k 151 (529)
.+.+|.+|+|||++ +++|||||+||++|.+++| +++|+++||++|++||+++ ++|++|++++|++|+|
T Consensus 36 ~~~~i~l~~GDIt~~~~~~~vDAIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~l~~~~g~~~~G~a~iT~~~~L--- 112 (193)
T 3ejg_A 36 VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSL--- 112 (193)
T ss_dssp EETTEEEEECCHHHHHHHCCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEEETTE---
T ss_pred CCCeEEEEeCcccccCcCCCcCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEecCCCe---
Confidence 66899999999999 8999999999999998876 6999999999999999875 8999999999999999
Q ss_pred eEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEE
Q 009662 152 RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAV 231 (529)
Q Consensus 152 ~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V 231 (529)
+|||||||.|+. ..++.|++||++||+. .+|||||+||||++|||++++|++|++++++ .+|
T Consensus 113 ~VIHtVGP~~~~----~~~~~L~~~y~~~L~~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~---------~~V 174 (193)
T 3ejg_A 113 RIFNVVGPRKGK----HERDLLIKAYNTINNE-----QGTPLTPILSCGIFGIKLETSLEVLLDVCNT---------KEV 174 (193)
T ss_dssp EEEEEECCCSST----THHHHHHHHHHHHHHS-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCS---------SCE
T ss_pred eEEEecCCCCCc----hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc---------CeE
Confidence 999999999964 3568999999999973 3799999999999999999999999999988 379
Q ss_pred EEEecCchhHHHHHHhcc
Q 009662 232 VFCTTTASDTEIYKRLLP 249 (529)
Q Consensus 232 ~fv~~~~~~~~~y~~~l~ 249 (529)
+||+|+++++++|+++|.
T Consensus 175 ~fv~f~~~~~~~~~~~l~ 192 (193)
T 3ejg_A 175 KVFVYTDTEVCKVKDFVS 192 (193)
T ss_dssp EEEECSHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHHHhc
Confidence 999999999999999863
No 16
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=100.00 E-value=1.5e-35 Score=277.99 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=139.9
Q ss_pred CCCCCCcccccCCCCEEEEEEcCccee----eccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCC
Q 009662 69 NGMVSRFPVDHEINSKIYLWRGNPWNL----EVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGM 139 (529)
Q Consensus 69 ~~~~~~f~~~~~~n~~I~i~~GDI~~~----~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~ 139 (529)
.....+|.. +.+|.+|+|||+++ ++|||||+||++|.+|+| +++|++++|++|++||+++ ++|++|+
T Consensus 7 ~~~~~pf~~----~~~i~i~~GDIt~~~~~~~~DaIVNaaN~~l~~ggGv~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~ 82 (174)
T 2vri_A 7 APFTKPFAV----YKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGA 82 (174)
T ss_dssp TEECCCSEE----ETTEEEEESCHHHHTTTSCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTC
T ss_pred CCcCCccCC----CCeEEEEeccccccccCCCccEEEECCCccCCCCCcHhHHHHHHhhHHHHHHHHHHHHhcCCCCCCe
Confidence 344556665 57899999999999 999999999999998876 6899999999999999874 8999999
Q ss_pred eEEcccCCCCCCeEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHH
Q 009662 140 AKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRR 219 (529)
Q Consensus 140 a~~T~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~ 219 (529)
+++|++++| ||||+|||+|... .++.|++||++||++ .+|||||+||||++|||++++|++|++++++
T Consensus 83 a~iT~~~~l---~VIH~vgP~~~~~----~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~ 150 (174)
T 2vri_A 83 GVMLECEKF---NVFNVVGPRTGKH----EHSLLVEAYNSILFE-----NGIPLMPLLSCGIFGVRIENSLKALFSCDIN 150 (174)
T ss_dssp EEEEECSSC---EEEEEECCCSSTT----HHHHHHHHHHHHHHS-----SSCEEEECSSCGGGCCCHHHHHHHHHTSCCC
T ss_pred EEEEECCCC---EEEEEcCCCCCcc----hHHHHHHHHHHHHhh-----CCcEEeCccccCCCCCCHHHHHHHHHHHHhh
Confidence 999999998 9999999999532 478999999999985 3499999999999999999999999999986
Q ss_pred HHHHcCCCceEEEEEecCchhHHHHHHhcc
Q 009662 220 FLEKQKDKISAVVFCTTTASDTEIYKRLLP 249 (529)
Q Consensus 220 fl~~~~~~i~~V~fv~~~~~~~~~y~~~l~ 249 (529)
++|+|++++++++++|+++|+
T Consensus 151 ---------~~V~~v~f~~~~~~~~~~~l~ 171 (174)
T 2vri_A 151 ---------KPLQVFVYSSNEEQAVLKFLD 171 (174)
T ss_dssp ---------SCEEEEECSHHHHHHHHHHHH
T ss_pred ---------CcEEEEEcCHHHHHHHHHHHh
Confidence 579999999999999999874
No 17
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=100.00 E-value=1.1e-34 Score=270.93 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=134.0
Q ss_pred ccccCCCCEEEEEEcCcceeecc--------EEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHh----CCCCCCCeEE
Q 009662 76 PVDHEINSKIYLWRGNPWNLEVD--------TVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKV 142 (529)
Q Consensus 76 ~~~~~~n~~I~i~~GDI~~~~vD--------aIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~a~~ 142 (529)
......+..|++|+||||++++| ||||+||++|.+++| +++||++||++|++||+++ ++|+ +++
T Consensus 7 ~~~~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~---a~i 83 (176)
T 3ejf_A 7 TCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLV 83 (176)
T ss_dssp ---CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCCCCSHHHHHHHHHHCHHHHHHHHHHHHHHCCCS---EEE
T ss_pred cccCCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCC---eee
Confidence 34456788999999999999765 599999999998876 6999999999999999986 7887 999
Q ss_pred cccCCCCCCeEEEEcCCCccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHH
Q 009662 143 TNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLE 222 (529)
Q Consensus 143 T~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~ 222 (529)
|.|++|++++|||+|||.|..+ ..++.|++||++||+ ++++|||||+||||++|||++++|++|+++++.
T Consensus 84 T~G~~l~t~~VIHtVGP~~~~~---~~~~~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~--- 153 (176)
T 3ejf_A 84 TPSFVKGIQCVNNVVGPRHGDN---NLHEKLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG--- 153 (176)
T ss_dssp ECCCSTTEEEEEEECCCCTTCS---CHHHHHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT---
T ss_pred cccccccCCEEEEeCCCCCCCc---cHHHHHHHHHHHHHH----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh---
Confidence 9999999999999999999653 246799999999998 999999999999999999999999999999984
Q ss_pred HcCCCceEEEEEecCchhHHHHHHhc
Q 009662 223 KQKDKISAVVFCTTTASDTEIYKRLL 248 (529)
Q Consensus 223 ~~~~~i~~V~fv~~~~~~~~~y~~~l 248 (529)
..-.|++..+|.+.+++|+.++
T Consensus 154 ----~~v~v~~~~~D~e~~~~~~~~~ 175 (176)
T 3ejf_A 154 ----CTIRVLLFSLSQEHIDYFDVTC 175 (176)
T ss_dssp ----CCCEEEEEESCHHHHHHHHHTC
T ss_pred ----cceEEEEEcCCHHHHHHHHHHh
Confidence 1224555555678888888765
No 18
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=100.00 E-value=8e-35 Score=291.21 Aligned_cols=173 Identities=11% Similarity=0.061 Sum_probs=147.8
Q ss_pred CCEEEEEEcCccee-------------eccEEEEcCCCCCCCCCc-HHHHHHhhC-hhHHHHHHHh---CCCCCCCeEEc
Q 009662 82 NSKIYLWRGNPWNL-------------EVDTVVNSTNENLDEAHS-SPGLHAAAG-PGLAEECATL---GGCRTGMAKVT 143 (529)
Q Consensus 82 n~~I~i~~GDI~~~-------------~vDaIVNsaN~~l~~~~~-~~aI~~~aG-~~L~~e~~~~---~~~~~G~a~~T 143 (529)
+.+|.+++|||+++ ++|||||+||+.+.+||| ++||++++| +.++++|+++ +.|++|++++|
T Consensus 44 ~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~~gGGVd~AI~raaGg~~l~~ec~~~~~~g~~~~G~a~iT 123 (284)
T 1njr_A 44 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVV 123 (284)
T ss_dssp -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCCCCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEEE
T ss_pred CCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCCCCchHHHHHHHhhCcHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 56899999999999 899999999999998776 699999975 7779999884 88999999999
Q ss_pred ccC----------CCCCCeEEEEcCCCccCcc--hh-----hHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCCh
Q 009662 144 NAY----------DLPARRVIHTVGPKYAVKY--HT-----AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPR 206 (529)
Q Consensus 144 ~~~----------~L~~k~IIH~VgP~~~~~~--~~-----~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~ 206 (529)
++| +|||+||||+|||+|..+. .+ ..++.|++||++||++| +++++|||||+||||++|||+
T Consensus 124 ~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~ 202 (284)
T 1njr_A 124 DLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPP 202 (284)
T ss_dssp EGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCH
T ss_pred ECCcccccccchhcCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCH
Confidence 999 9999999999999997652 11 23579999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCCChhhHHHHh
Q 009662 207 EPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPRDKHEEEVAI 263 (529)
Q Consensus 207 ~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr~~~e~~~~~ 263 (529)
+++|++|+++++.|++.++. .++.|+||.+ +.+ ...|++++..||..++
T Consensus 203 ~~aA~i~~~av~~f~~~~~~s~~~~~~vi~~~~-~~~-------~~~~~~~~~~ee~~~~ 254 (284)
T 1njr_A 203 IISCKSMAFALRLYMAGDHISKELKNVLIMYYL-QYP-------FEPFFPESCKIECQKL 254 (284)
T ss_dssp HHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHT-TCC-------CGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccceEEEEEEC-HHH-------HHHHHhhhHHHHHHHh
Confidence 99999999999999987652 2345666555 444 4567888888877665
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.97 E-value=2.2e-31 Score=279.09 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=139.3
Q ss_pred EEEEEEcCcceeeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcCCCcc
Q 009662 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~VgP~~~ 162 (529)
.+.|++||||+.++|||||+||++|..|+| ++|||++||+++.+ +.|++|++++|.+| +|||||||||.|+
T Consensus 345 sfrIIRgDITk~~vDAIVNAANtsL~gGgGVdGAIhraaG~~ll~-----~~~~tG~AkIT~g~---aKyIIHtVGPvw~ 416 (670)
T 4gua_A 345 SYRTKRENIADCQEEAVVNAANPLGRPGEGVCRAIYKRWPTSFTD-----SATETGTARMTVCL---GKKVIHAVGPDFR 416 (670)
T ss_dssp CEEEECSCGGGCCSSEEEEECCTTCCCCSSHHHHHHHHCGGGGTT-----CCCCTTCEEEEEET---TEEEEEECCCCTT
T ss_pred ceeEEeccccccccCEEEeCCCCCCCCcCCHhHHHHHHhhHHHhc-----CCCCcceEEEecCC---CceEEEcCCCCcc
Confidence 578899999999999999999999998877 69999999999864 68999999999999 6999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEecCchhHH
Q 009662 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 242 (529)
Q Consensus 163 ~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~~~~~~~ 242 (529)
++...+..++|.+||+++|++|.+++++|||||+||||++|||++ +++++++++..||+.+. -+|+++++|.+...
T Consensus 417 ~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D---~dV~IvcfDKkwe~ 492 (670)
T 4gua_A 417 KHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTD---ADVTIYCLDKKWKE 492 (670)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSS---CEEEEECSCHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccC---CEEEEEEecChHHH
Confidence 988777668999999999999999999999999999999999987 58999999999998764 27999999877666
Q ss_pred HHHHhcc
Q 009662 243 IYKRLLP 249 (529)
Q Consensus 243 ~y~~~l~ 249 (529)
.++..+.
T Consensus 493 ~Ik~ai~ 499 (670)
T 4gua_A 493 RIDAALQ 499 (670)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
No 20
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.95 E-value=8.2e-28 Score=238.92 Aligned_cols=139 Identities=16% Similarity=0.222 Sum_probs=132.5
Q ss_pred CCChHHHHhccceeecccCCCCCeEEEEEeeeecCCcCCHHHHHHHHHHHhhcccCCCEEEEEEcCCCccCCCCCHHHHH
Q 009662 386 SLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMR 465 (529)
Q Consensus 386 ~~dl~~i~~~~~ly~~G~D~~GRpVvvi~~~~~~~~~~d~e~ll~yvi~~Le~~~~~~yviVyd~t~~s~~~~~~ls~lk 465 (529)
.+||++|++++++|+.|.|++|||||++++++++++..|+|.+++|+++++++++.++|++|||||+++..+.|+++|++
T Consensus 1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~~~~y~lV~d~T~~~~~n~p~~~wl~ 80 (256)
T 3pg7_A 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLS 80 (256)
T ss_dssp CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHHHH
T ss_pred CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCcccCCcHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhcccceEEEEcCChHHHHHHHHh-hhcccccccceEEEEcChhhhccCCcC
Q 009662 466 RLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTL-QLLVDNVVCLKLFLIETYYFFHPKGRG 525 (529)
Q Consensus 466 ~~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~-~~Fls~K~~~KI~~v~sl~eL~~~~~~ 525 (529)
++|+++|+++++||+++||||||+|+|.+++.+ ++|.+.|+++|++|+++++||... +.
T Consensus 81 ~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL~~~-i~ 140 (256)
T 3pg7_A 81 KWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEH-IE 140 (256)
T ss_dssp HTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGGGGT-SC
T ss_pred HHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHHHhh-cC
Confidence 999999999999999999999999999887765 677788999999999999999877 54
No 21
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.93 E-value=2.1e-26 Score=232.03 Aligned_cols=153 Identities=15% Similarity=0.225 Sum_probs=124.4
Q ss_pred hhhHHHHHHHhcC---CChHHHHhccceeecccCCCCCeEEEEEeeeecCCcCCHHHHHHHHHHHhhcccCCCEEEEEEc
Q 009662 374 YSLHSRYLAKANS---LNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFH 450 (529)
Q Consensus 374 ~~~~~~~l~~~~~---~dl~~i~~~~~ly~~G~D~~GRpVvvi~~~~~~~~~~d~e~ll~yvi~~Le~~~~~~yviVyd~ 450 (529)
.+.|.+||+|++. +++++|++.+++|+.|.|++||||||+++++++.+..|+|.+++|+++++++++.++|++||||
T Consensus 5 ~~~~~efM~r~~~~~~e~~~~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~~~~y~lV~D~ 84 (290)
T 3peg_A 5 SSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDL 84 (290)
T ss_dssp -------------------CCGGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTTSCEEEEEEC
T ss_pred hHHHHHHHHHhhccChhhhhhhhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 3467889999975 5677788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCHHHHHHHHHHHhHHHhcccceEEEEcCChHHHHHHH-HhhhcccccccceEEEEcChhhhccCCcCCC
Q 009662 451 SAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIF-TLQLLVDNVVCLKLFLIETYYFFHPKGRGEK 527 (529)
Q Consensus 451 t~~s~~~~~~ls~lk~~~~~l~~~~~knLk~iyivhp~~~~k~~~~-~~~~Fls~K~~~KI~~v~sl~eL~~~~~~~~ 527 (529)
|+++..+.|+.+|++++++++|+++++||+++||+|||+|+|.+++ ++++|.+.|+.+|++|++++.+|... ++++
T Consensus 85 T~~~~~n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~~L~~~-i~~~ 161 (290)
T 3peg_A 85 THTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEH-IEHE 161 (290)
T ss_dssp TTCCGGGCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSCC---------
T ss_pred CCCCccCCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHHHHHhh-CCHH
Confidence 9999999999999999999999999999999999999999999875 66899999999999999999998777 6544
No 22
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.91 E-value=2.6e-24 Score=199.00 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=114.9
Q ss_pred CCCEEEEEEcCcceee-ccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcC
Q 009662 81 INSKIYLWRGNPWNLE-VDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVG 158 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~-vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~Vg 158 (529)
.+.+|++++|||++.+ +|||||++|+++.+|+| +++|++++| ++ .||.+ ++|++|++++|.++ ++||||+||
T Consensus 18 ~~~~i~~v~GDIt~~~~~daIVnaaN~~~~~GgGVa~ai~~~~p-~~-~e~~~-~~~~~G~a~it~~~---~~~Vih~vg 91 (160)
T 2jyc_A 18 EGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFG-GV-QELLN-QQKKSGEVAVLKRD---GRYIYYLIT 91 (160)
T ss_dssp CSCSEEEEESCSSSSCSSCEEEEEECTTCCCCSSTHHHHHHHHC-CH-HHHHH-HCCCTTCEEEEEET---TEEEEEEEC
T ss_pred CCceEEEEeCcCCCCCCCCEEEEccCCcCCCCCcHHHHHHHHCh-HH-HHHhc-cCCCCCcEEEEecC---CcEEEEEec
Confidence 3568999999999998 79999999999998876 699999995 45 68876 68999999999985 699999999
Q ss_pred CC-ccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHH
Q 009662 159 PK-YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRR 219 (529)
Q Consensus 159 P~-~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~ 219 (529)
|. |..+. ..+.|++||+++++.|.+++++|||||.||||++|+|+++++++|.+++.+
T Consensus 92 ~~~~~~~~---~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~ 150 (160)
T 2jyc_A 92 KKRASHKP---TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 150 (160)
T ss_dssp SSSTTSCC---CHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTT
T ss_pred CCCCCCCC---hHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 98 65432 257899999999999999999999999999999999999999998887764
No 23
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.91 E-value=2.2e-24 Score=197.39 Aligned_cols=130 Identities=14% Similarity=0.135 Sum_probs=114.3
Q ss_pred CCCEEEEEEcCcceee-ccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHHHhCCCCCCCeEEcccCCCCCCeEEEEcC
Q 009662 81 INSKIYLWRGNPWNLE-VDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVG 158 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~-vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~a~~T~~~~L~~k~IIH~Vg 158 (529)
.+.+|++++|||++.+ +|||||++|.++.+|+| +++|++++ |++ .||.+ +.+++|++++|.++ ++||||+++
T Consensus 7 ~~~~i~~v~GDIt~~~~~daIVnaaN~~~~~G~Gva~ai~~~~-p~~-~~~~~-~~~~~G~a~it~~~---~~~Vih~v~ 80 (149)
T 2eee_A 7 GGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKF-GGV-QELLN-QQKKSGEVAVLKRD---GRYIYYLIT 80 (149)
T ss_dssp SSCCCEEECSCSSSSCSSCEEEEEEETTCCCCSTTHHHHHHHT-CCH-HHHHT-TCCCTTCEEEEESS---SSEEEEEEE
T ss_pred CCeeEEEEecccccCCCCcEEEEEeCCCCCcCCcHHHHHHHHC-cHH-HHHhc-ccCCCccEEEEEcC---CCEEEEEEe
Confidence 4567999999999998 79999999999998776 68999888 555 57765 68999999999985 799999999
Q ss_pred CC-ccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHH
Q 009662 159 PK-YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRR 219 (529)
Q Consensus 159 P~-~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~ 219 (529)
|. |.... ..+.|++||+++|+.|.+++++|||||.||||++|+|+++++++|.+++.+
T Consensus 81 ~~~~~~~~---~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~~ 139 (149)
T 2eee_A 81 KKRASHKP---TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 139 (149)
T ss_dssp ESSTTSCC---CHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCC---CHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhcc
Confidence 98 65422 257899999999999999999999999999999999999999998887654
No 24
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.88 E-value=1.4e-22 Score=187.34 Aligned_cols=131 Identities=13% Similarity=0.067 Sum_probs=111.9
Q ss_pred EEEEEEcCcce---eeccEEEEcCCCCCCCCCc-HHHHHHhhChhHHHHHH----HhCCCCCCCeEEcccCCCCCCeEEE
Q 009662 84 KIYLWRGNPWN---LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECA----TLGGCRTGMAKVTNAYDLPARRVIH 155 (529)
Q Consensus 84 ~I~i~~GDI~~---~~vDaIVNsaN~~l~~~~~-~~aI~~~aG~~L~~e~~----~~~~~~~G~a~~T~~~~L~~k~IIH 155 (529)
.|.+++|||++ .++|||||++|..+.+|+| +.+|++++ |++.++|+ +.+.+++|++++|+++ +.+||||
T Consensus 5 ~i~~v~GDit~~~~~~~daIvn~~N~~~~~G~Gva~ai~~~~-p~~~~~~~~~~~~~~~~~~G~~~i~~~~--~~~~Vi~ 81 (158)
T 2fg1_A 5 EILYIKGDATAPIGSGVKVITHICNDIGGWGKGFVLALSKKW-KMPEEAYRQWYKSQEEFTLGAVQFVNVE--NKLYVAN 81 (158)
T ss_dssp CCEEEESCTTSCCSSSCEEEEEEEETTCCCCSTHHHHHHHHC-SHHHHHHHHHHHHTSSCSTTCEEEEEEE--TTEEEEE
T ss_pred EEEEEecccCCCCCCCCeEEEEEecCCCCcCccHHHHHHHHC-ChHHHHHHHHHhhccCcCCccEEEEecC--CCeEEEE
Confidence 68999999999 8899999999999998876 68999888 78877754 4679999999999984 2499999
Q ss_pred EcCCC-ccCcchh---hHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHH
Q 009662 156 TVGPK-YAVKYHT---AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 218 (529)
Q Consensus 156 ~VgP~-~~~~~~~---~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~ 218 (529)
+|+|. |..+... ...+.|++||+++++.|.+++. |||||.||||++|+|++++++++.+++.
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l~ 147 (158)
T 2fg1_A 82 MIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEELI 147 (158)
T ss_dssp EEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHTG
T ss_pred EEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHhc
Confidence 99998 7543211 2367899999999999999997 9999999999999999999987766654
No 25
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.78 E-value=1.3e-19 Score=185.58 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=124.8
Q ss_pred hHHHHhccceee-cccCCCCCeEEEEEeeeecCCcCCHHHHHHHHHHHhhcccC------CCEEEEEEcCCCccCC--CC
Q 009662 389 LSEIAEMKIVYR-GGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQ------KPYSIVYFHSAASLQL--QP 459 (529)
Q Consensus 389 l~~i~~~~~ly~-~G~D~~GRpVvvi~~~~~~~~~~d~e~ll~yvi~~Le~~~~------~~yviVyd~t~~s~~~--~~ 459 (529)
+.++.+.|+++. .|+|++||||++++++++++..++.+.++++++..+|..+. ..+++|+|++|+++.+ .+
T Consensus 135 i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~ 214 (316)
T 3hx3_A 135 VRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASL 214 (316)
T ss_dssp HHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC
T ss_pred HHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccC
Confidence 555567788655 59999999999999999999999999999999999987775 3599999999998763 36
Q ss_pred CHHHHHHHHHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccccccceEEEEc-ChhhhccCCcCCCCC
Q 009662 460 DLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLFLIE-TYYFFHPKGRGEKLL 529 (529)
Q Consensus 460 ~ls~lk~~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~~v~-sl~eL~~~~~~~~ll 529 (529)
+++++|+++.+++..||.||+.+||||+||+|.++|++++||+++|+++||+++. ++++|.+. ++++.|
T Consensus 215 ~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L~~~-I~~~~L 284 (316)
T 3hx3_A 215 RTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQE-IDENIL 284 (316)
T ss_dssp CHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCCHHHHHH-SCGGGS
T ss_pred ChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCHHHHHhh-CCHhhC
Confidence 8899999999999999999999999999999999999999999999999999994 68899887 877654
No 26
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.75 E-value=1.6e-18 Score=171.93 Aligned_cols=141 Identities=9% Similarity=0.072 Sum_probs=122.4
Q ss_pred CChHHHHhcccee-ecccCCCCCeEEEEEeeeecCCcCCHHHHHHHHHHHhhcccCC------CEEEEEEcCCCccCC--
Q 009662 387 LNLSEIAEMKIVY-RGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQK------PYSIVYFHSAASLQL-- 457 (529)
Q Consensus 387 ~dl~~i~~~~~ly-~~G~D~~GRpVvvi~~~~~~~~~~d~e~ll~yvi~~Le~~~~~------~yviVyd~t~~s~~~-- 457 (529)
.++..+.+.|+.. ..|+|++||||++++.++++++.++.+.++++++.++|..+.. .+++|+|++|+++.+
T Consensus 74 ~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~ 153 (262)
T 1r5l_A 74 RSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAF 153 (262)
T ss_dssp GGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHH
T ss_pred HHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHh
Confidence 3455666778754 4699999999999999999998889889999999888876653 599999999998764
Q ss_pred CCCHHHHHHHHHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccccccceEEEEcC--hhhhccCCcCCCCC
Q 009662 458 QPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLFLIET--YYFFHPKGRGEKLL 529 (529)
Q Consensus 458 ~~~ls~lk~~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~~v~s--l~eL~~~~~~~~ll 529 (529)
.++++++|++..+++..||+||+.+||||+||++.++|++++||+++++++||+++.+ .++|.+. ++ +.|
T Consensus 154 ~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~-i~-~~L 225 (262)
T 1r5l_A 154 QITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQH-FP-DIL 225 (262)
T ss_dssp HCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHH-ST-TTS
T ss_pred ccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHH-hh-hhC
Confidence 4678999999999999999999999999999999999999999999999999999965 6788877 66 543
No 27
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.71 E-value=1.8e-17 Score=167.70 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=115.1
Q ss_pred HHHhccceeecccCCCCCeEEEEEeeeecCCc----CCHHHHHHHHHHHhhccc--------------CCCEEEEEEcCC
Q 009662 391 EIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEFEPLI--------------QKPYSIVYFHSA 452 (529)
Q Consensus 391 ~i~~~~~ly~~G~D~~GRpVvvi~~~~~~~~~----~d~e~ll~yvi~~Le~~~--------------~~~yviVyd~t~ 452 (529)
.+.+....+..|+|++||||++++.+++++.. .+.++++++++..+|.++ .+.+++|+|++|
T Consensus 99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g 178 (296)
T 1aua_A 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG 178 (296)
T ss_dssp HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCC
Confidence 33333334556999999999999999988653 478888888887776432 245999999999
Q ss_pred CccCCCCC-HHHHHHHHHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccccccceEEEEcC--hhhhccCCcCCCCC
Q 009662 453 ASLQLQPD-LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLFLIET--YYFFHPKGRGEKLL 529 (529)
Q Consensus 453 ~s~~~~~~-ls~lk~~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~~v~s--l~eL~~~~~~~~ll 529 (529)
+++.+.+. ++++|++..+++..||+||+.+||||+||+|+++|++++||+++++++||+++.+ .++|.+. ++++.|
T Consensus 179 ~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~-i~~~~L 257 (296)
T 1aua_A 179 ISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQ-IPAENL 257 (296)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTT-SCSSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhh-CCHhhC
Confidence 98764333 6899999999999999999999999999999999999999999999999999976 6789988 887765
No 28
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.66 E-value=2.4e-16 Score=166.40 Aligned_cols=129 Identities=12% Similarity=0.153 Sum_probs=113.6
Q ss_pred ecccCCCCCeEEEEEeeeecCC----cCCHHHHHHHHHHHhhccc-------------CCCEEEEEEcCCCccCCC--CC
Q 009662 400 RGGVDSEGRPVMVVVGAHFLLR----CLDLERFVLYVVKEFEPLI-------------QKPYSIVYFHSAASLQLQ--PD 460 (529)
Q Consensus 400 ~~G~D~~GRpVvvi~~~~~~~~----~~d~e~ll~yvi~~Le~~~-------------~~~yviVyd~t~~s~~~~--~~ 460 (529)
..|+|++||||++++.++++++ ..+.+.++++++..+|..+ ...+++|+|++|+++.+. +.
T Consensus 88 ~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~ 167 (403)
T 1olm_A 88 MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPA 167 (403)
T ss_dssp EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHH
T ss_pred eeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHH
Confidence 3599999999999999999886 4788999999998887553 256999999999987754 46
Q ss_pred HHHHHHHHHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccccccceEEEEcC--hhhhccCCcCCCCC
Q 009662 461 LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLFLIET--YYFFHPKGRGEKLL 529 (529)
Q Consensus 461 ls~lk~~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~~v~s--l~eL~~~~~~~~ll 529 (529)
++++++++.+++..||+||+.+||||+||+|.++|++++||+++++++||+++.+ .++|.+. ++++.|
T Consensus 168 ~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~-I~~~~L 237 (403)
T 1olm_A 168 VEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKH-ISPDQV 237 (403)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTT-SCGGGS
T ss_pred HHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhh-cChhhC
Confidence 8899999999999999999999999999999999999999999999999999975 5688888 886654
No 29
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.65 E-value=5.2e-17 Score=166.48 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=114.6
Q ss_pred HHhccceeecccCCCCCeEEEEEeeeecCCc----CCHHHHHHHHHHHhhccc--------------CCCEEEEEEcCCC
Q 009662 392 IAEMKIVYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEFEPLI--------------QKPYSIVYFHSAA 453 (529)
Q Consensus 392 i~~~~~ly~~G~D~~GRpVvvi~~~~~~~~~----~d~e~ll~yvi~~Le~~~--------------~~~yviVyd~t~~ 453 (529)
+.+.+..|..|+|++||||++++.+++++.. .+.++++++++..+|.++ .+..++|+|++|+
T Consensus 115 ~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~ 194 (320)
T 3q8g_A 115 LAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGI 194 (320)
T ss_dssp HHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred HHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCC
Confidence 4455556777999999999999999988764 367788888877766543 2457999999999
Q ss_pred ccCCCCC-HHHHHHHHHHHhHHHhcccceEEEEcCChHHHHHHHHhhhcccccccceEEEEcC--hhhhccCCcCCCCC
Q 009662 454 SLQLQPD-LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVCLKLFLIET--YYFFHPKGRGEKLL 529 (529)
Q Consensus 454 s~~~~~~-ls~lk~~~~~l~~~~~knLk~iyivhp~~~~k~~~~~~~~Fls~K~~~KI~~v~s--l~eL~~~~~~~~ll 529 (529)
+..+.+. ++++|++..+++..||+||+.+||||+||+++++|++++||+++|+++||+++.+ .++|.+. ++++.|
T Consensus 195 sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~-i~~~~L 272 (320)
T 3q8g_A 195 SLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQ-IPIENL 272 (320)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHH-SCGGGS
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhh-CChhhC
Confidence 8765332 7889999999999999999999999999999999999999999999999999976 5788877 776654
No 30
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=98.73 E-value=3.5e-08 Score=97.93 Aligned_cols=167 Identities=10% Similarity=0.056 Sum_probs=110.5
Q ss_pred CCEEEEEEcCccee---------eccEEEEcCCCCCCCCC---cH----HHHHHhhC--hhHHH--HH---HH--hCCCC
Q 009662 82 NSKIYLWRGNPWNL---------EVDTVVNSTNENLDEAH---SS----PGLHAAAG--PGLAE--EC---AT--LGGCR 136 (529)
Q Consensus 82 n~~I~i~~GDI~~~---------~vDaIVNsaN~~l~~~~---~~----~aI~~~aG--~~L~~--e~---~~--~~~~~ 136 (529)
..+|.++.+|.... .-=++.|.||..--.|| |+ .+|.+... +.|.. +. +. ..++.
T Consensus 64 ~t~i~V~~~dtl~aA~~L~~~~~~~v~vLNfAs~~~PGGG~~~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~~~~~~~~~ 143 (277)
T 3sig_A 64 PTRIEVTEETTLAAARRLTGAAGDQVACLNFASAEHPGGGFLSGAHAQEEGLARSSGLYASLRAVPQFYAFHHRQRDPLY 143 (277)
T ss_dssp -CEEEEESCCHHHHHHHHHHHCSSCCEEEEECCSSSTTTTGGGTCCSHHHHHHHHBSHHHHHTTCHHHHHHHHHHCCTTC
T ss_pred CceEEEEeCCHHHHHHHHHHhcCCCeEEEecccccCCCCCcccCcchHHHHHHHhhhHHHHHhhhhhhhccccccCCCCC
Confidence 46799999986532 22378999988655443 21 34554433 11211 11 11 12344
Q ss_pred CCCeEEccc--------CCC-C---CCeEEEEcCCCccC----cchhhHHHHHHHHHHHHHHHHHHcCCeeeeecccccC
Q 009662 137 TGMAKVTNA--------YDL-P---ARRVIHTVGPKYAV----KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTE 200 (529)
Q Consensus 137 ~G~a~~T~~--------~~L-~---~k~IIH~VgP~~~~----~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP~i~tG 200 (529)
+..++.++. +.| . .--||.++.|++.. ....+..+.|...++.+|..|.++|+++|++|++|||
T Consensus 144 ~~~~IySP~V~vfR~~~~~ll~~p~~v~vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCG 223 (277)
T 3sig_A 144 SDHLIYSPGVPVFRDDAGRLLEEPYRVAFLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCG 223 (277)
T ss_dssp CSCEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSS
T ss_pred CCCeEECCCcEEEeCCCCccccCCceeEEEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 444444432 222 1 11388888897742 1122446789999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEecCc----hhHHHHHHhcc
Q 009662 201 AKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTA----SDTEIYKRLLP 249 (529)
Q Consensus 201 ~~g~p~~~~A~i~l~ti~~fl~~~~~~i~~V~fv~~~~----~~~~~y~~~l~ 249 (529)
.||+|++++|+++.+.+.+.- .....+++|+|++++. ..+++|++.+.
T Consensus 224 vfgnpp~~VA~~~~~vL~~~~-~f~~~f~~VvFAv~d~~~~~~n~~~F~~~F~ 275 (277)
T 3sig_A 224 VFGNDPAQVAETFAGLLLDGG-PFAGRFAHVVFAVWDTAPGAPRHAAFARRFG 275 (277)
T ss_dssp TTCCCHHHHHHHHHHHHSTTC-TTTTTCSEEEEECCCCSTTCHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHHHHhhcc-hhcCCceEEEEEEecCCCcchHHHHHHHHHh
Confidence 999999999999999887421 1124789999999986 57888888764
No 31
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV}
Probab=44.20 E-value=3.1e+02 Score=28.90 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=69.3
Q ss_pred CEEEEEEcCcceeeccEEEEcCCCCCCCCCcHHHHHHhhChhHHHHHHHhC-CCCCCCeEEccc-CCCCCCeEEEEcCCC
Q 009662 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLG-GCRTGMAKVTNA-YDLPARRVIHTVGPK 160 (529)
Q Consensus 83 ~~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~~~aI~~~aG~~L~~e~~~~~-~~~~G~a~~T~~-~~L~~k~IIH~VgP~ 160 (529)
.++.+..++....+.|++|-..-+.-...+....+-++.+..|.+-++..+ .-+.|+..+..+ ..++++.|+.+-.-+
T Consensus 3 M~~~~~~~~~~~~~~d~lvv~v~~~~~l~~~~~~ld~~~~g~l~~~~~~~~f~gk~G~~~~l~~~~~~~~~~v~lvGlG~ 82 (490)
T 3jru_B 3 LQFTLNQDAPASAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAAPRVLVVGLGD 82 (490)
T ss_dssp CEEEEECCCTTTCCSSEEEEEECTTSCBCHHHHHHHHHTTSHHHHHHHHTCSCCSTTCEEEEECCTTCSSSEEEEEECCC
T ss_pred eEEEEEcCCcccccCCEEEEEEeCCCccchhHHHHhHHHHHHHHHHHHhCCCCCCCCCEEEEccCCCCCccEEEEEecCC
Confidence 367888899999999999998755432223346677777888877776543 445688776553 446677776543221
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeec
Q 009662 161 YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (529)
Q Consensus 161 ~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP 195 (529)
- ..+ ..+.++.+...+.+.+.+.+.+++++.
T Consensus 83 ~-~~~---~~~~~r~a~~~~~~~l~~~~~~~~~~~ 113 (490)
T 3jru_B 83 A-GKF---GVAPYLKAIGDATRALKTGAVGTALLT 113 (490)
T ss_dssp G-GGC---SHHHHHHHHHHHHHHHSSSSCSEEEEC
T ss_pred c-ccC---CHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 1 111 134566666666666666777776553
No 32
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=37.22 E-value=46 Score=31.49 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHH
Q 009662 172 ALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEK 223 (529)
Q Consensus 172 ~L~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~ 223 (529)
.=...++++++.|.+.|++.+.+=++||+++.=|.+++ ..+++-+++++..
T Consensus 31 ~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev-~~Lm~l~~~~l~~ 81 (227)
T 2vg0_A 31 MGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDEL-AALIEIITDVVEE 81 (227)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHH-HHHHHHHHHHHHH
Confidence 34577888899999999999999999999999999987 5666777777776
No 33
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=36.66 E-value=1.4e+02 Score=25.06 Aligned_cols=94 Identities=9% Similarity=-0.004 Sum_probs=59.4
Q ss_pred EeeeecCCcCCHHHHHHHHHHHhhcccCCCEEEEEEcCCCccCCCCCHHHHHHHHHHHhHHHhcccceEEEEcCChHHHH
Q 009662 414 VGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKA 493 (529)
Q Consensus 414 ~~~~~~~~~~d~e~ll~yvi~~Le~~~~~~yviVyd~t~~s~~~~~~ls~lk~~~~~l~~~~~knLk~iyivhp~~~~k~ 493 (529)
+.+.+.. -|++.++..+-..++..-...+.++++.+.+.. +.+.-+..-+. +..++.+.+..+=||--+-|.+.
T Consensus 26 ~~G~lt~--~d~~~l~~~l~~~l~~~~~~~i~ll~~~~~f~G---~~~~a~~~d~k-~~~~h~~~~~RiAvV~d~~W~~~ 99 (126)
T 2q3l_A 26 AVGKLTH--EDYEQMTPLLESALAGIKTPEIVALIDITELDG---LSLHAAWDDLK-LGLKHGKEFKRVAIIGQGELQEW 99 (126)
T ss_dssp EEEEECH--HHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEE---ECHHHHHHHHH-HHHHHGGGEEEEEEECCSHHHHH
T ss_pred EEeeECH--HHHHHHHHHHHHHHHhCCCceEEEEEEecCCCC---CCHHHHHHHHH-hhhhHHhcCCEEEEEcChHHHHH
Confidence 3345533 355555555555555444444888887655421 33444333333 34577899999999999999999
Q ss_pred HHHHhhhcccccccceEEEEcChh
Q 009662 494 TIFTLQLLVDNVVCLKLFLIETYY 517 (529)
Q Consensus 494 ~~~~~~~Fls~K~~~KI~~v~sl~ 517 (529)
+..++.+|++. .|+|.++.+
T Consensus 100 ~~~~~~~~~~~----evk~F~~~~ 119 (126)
T 2q3l_A 100 ATRVANWFTPG----EFKFFEDKR 119 (126)
T ss_dssp HHHHHHHHCSS----EEEEESCHH
T ss_pred HHHHHhhccCC----ceeccCCHH
Confidence 99999999765 445554443
No 34
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*
Probab=32.73 E-value=3.5e+02 Score=28.49 Aligned_cols=107 Identities=12% Similarity=0.075 Sum_probs=69.3
Q ss_pred EEEEEEcCcceeeccEEEEcCCCCCCCCCcHHHHHHhhChhHHHHHHHhC-CCCCCCeEEccc-CCCCCCeEEEEc-CCC
Q 009662 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLG-GCRTGMAKVTNA-YDLPARRVIHTV-GPK 160 (529)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVNsaN~~l~~~~~~~aI~~~aG~~L~~e~~~~~-~~~~G~a~~T~~-~~L~~k~IIH~V-gP~ 160 (529)
++.+..+++.+.+.|++|-..-+.-........+-++.+..|.+-++..+ .-+.|+..+... ..++++.|+-+- |..
T Consensus 2 ~~~~~~~~~~~~~~d~lvv~v~~~~~l~~~~~~ld~~~~g~l~~~~~~~~f~gk~G~~~~l~~~~~~~~~rv~lvGlG~~ 81 (497)
T 3h8g_F 2 ELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKD 81 (497)
T ss_dssp EEEEECSCGGGCCBSCEEEEEEGGGCCCHHHHHHHHHTTTHHHHHHHTCCCCCCTTCEEEECCCTTCSBSCEEEEEEESS
T ss_pred EEEEEcCChhhccCCEEEEEEecCCccchHHHHHhHHHHHHHHHHHHhCCCCCCCCCEEEEcCCCCCCccEEEEEECCCc
Confidence 57788889999999999987755322222346677777777877666543 345688776654 345666655442 321
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHcCCeeeeec
Q 009662 161 YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (529)
Q Consensus 161 ~~~~~~~~~~~~L~~~y~~~L~~a~e~~~~SIAfP 195 (529)
.. .....++.+...+.+.+.+.+.+++++.
T Consensus 82 --~~---~~~~~~r~a~~~~~~~l~~~~~~~~~~~ 111 (497)
T 3h8g_F 82 --EA---LGDRTWRKLVASVAGVLKGLNGADAVLA 111 (497)
T ss_dssp --SC---BCHHHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred --cc---CCHHHHHHHHHHHHHHHhhCCCceEEEe
Confidence 11 1235677777788888888888876654
No 35
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=28.61 E-value=1.4e+02 Score=25.83 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCC
Q 009662 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 205 p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
...+-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+
T Consensus 63 d~~~Qt~~~l~ni~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~ 114 (143)
T 3k0t_A 63 GIEAQITQVFENLKSVAQAAGGSFKDIVKLNIFLTDLGHFAKVNEIMGSYFS 114 (143)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCChHHEEEEEEEEcChHHHHHHHHHHHHHcC
Confidence 4566677777788888877653 344555556677889999999999997
No 36
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=27.95 E-value=1.1e+02 Score=26.21 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=40.7
Q ss_pred cccCCCCCeEE---EEEeeeecCCcCCHHHHHHHHHHHhhcccCCCEEEEEEcCCC
Q 009662 401 GGVDSEGRPVM---VVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAA 453 (529)
Q Consensus 401 ~G~D~~GRpVv---vi~~~~~~~~~~d~e~ll~yvi~~Le~~~~~~yviVyd~t~~ 453 (529)
.|+|..|.-++ ++=.+--+-+.++-+.++.|+-.++++.+.++|.+|-++.++
T Consensus 30 TGvD~~G~~ilsP~Y~e~~Lk~G~tltKeeil~~VQ~~idas~~~~f~vV~~~e~a 85 (136)
T 1c76_A 30 TGVDGKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSA 85 (136)
T ss_dssp EEECTTCCEEECCCCEEEECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEECTTC
T ss_pred eeecCCCCEEeccccEEEecCcCceecHHHHHHHHHHHhhhhhcCceEEEecCCCc
Confidence 59999999877 221111122457899999999999999999999999887765
No 37
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=27.94 E-value=1.4e+02 Score=24.89 Aligned_cols=50 Identities=8% Similarity=0.161 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCC
Q 009662 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 205 p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
....-++.+++.+..-|+.... ++-++.+.+.+..++..+.+....||+.
T Consensus 45 d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~v~~~~f~~ 97 (125)
T 3l7q_A 45 TIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKS 97 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCC
Confidence 4566677777777777777553 4445555567778898888888889974
No 38
>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1bui_C*
Probab=26.30 E-value=1.9e+02 Score=24.54 Aligned_cols=54 Identities=24% Similarity=0.368 Sum_probs=45.7
Q ss_pred ecccCCCCCeEEEEEeeeecCC---cCCHHHHHHHHHHHhhcccCCCEEEEEEcCCC
Q 009662 400 RGGVDSEGRPVMVVVGAHFLLR---CLDLERFVLYVVKEFEPLIQKPYSIVYFHSAA 453 (529)
Q Consensus 400 ~~G~D~~GRpVvvi~~~~~~~~---~~d~e~ll~yvi~~Le~~~~~~yviVyd~t~~ 453 (529)
..|+|++|..++..-.--|+.. .++-+.++.++-..++.....+|-+|-++..+
T Consensus 14 vtGvd~~g~~~~~p~y~d~~l~~g~~~tK~elL~~Vq~~idas~~~qf~vVdf~e~A 70 (121)
T 2sak_A 14 VTGVDSKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSA 70 (121)
T ss_dssp EEEECTTCCEEEEEEEEEEECCTTCEECHHHHHHHHHHHHTTSTTTTCEEEEECTTC
T ss_pred EEeEeCCCCEEEeeeeEEEEcccCcEecHHHHHHHHHHHhhhhhccceEEEecCccc
Confidence 3699999999998766666653 57889999999999999998899999998875
No 39
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=24.50 E-value=1.5e+02 Score=25.16 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCC
Q 009662 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 205 p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
....-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+.
T Consensus 42 d~~~Q~~~~l~nl~~~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 94 (128)
T 3kjj_A 42 TAAEQTADVLAQIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNGVWDAWVAA 94 (128)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhCC
Confidence 4567778888888888888663 4445555566778888888888888874
No 40
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=24.07 E-value=1.8e+02 Score=24.14 Aligned_cols=50 Identities=10% Similarity=0.165 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCC
Q 009662 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 205 p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
....-++.+++.+..-|+.... ++-++.+.+.+..++..+.+....||+.
T Consensus 44 d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~~ 96 (124)
T 1qd9_A 44 DIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDT 96 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChHHHHHHHHHHHHHcCC
Confidence 4566667777777777777553 3445555566678888888888888863
No 41
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=23.93 E-value=1.6e+02 Score=24.54 Aligned_cols=48 Identities=13% Similarity=0.267 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCC
Q 009662 207 EPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 207 ~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
..-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+.
T Consensus 36 ~~Q~~~~l~ni~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 86 (122)
T 3k12_A 36 QDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPE 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTTTSCT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHHHHHHHhCC
Confidence 44445555555555555432 3445555566778899999999999974
No 42
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=23.85 E-value=2.2e+02 Score=26.76 Aligned_cols=49 Identities=14% Similarity=0.322 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHH
Q 009662 174 SHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEK 223 (529)
Q Consensus 174 ~~~y~~~L~~a~e~~~~SIAfP~i~tG~~g~p~~~~A~i~l~ti~~fl~~ 223 (529)
...++++++.|.+.|++.+.+=++||.++.=|.+++... ++-+++++.+
T Consensus 36 ~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~L-m~L~~~~l~~ 84 (225)
T 3ugs_B 36 VKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFI-FELLDRCLDE 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHH-HHHHHHHHHH
Confidence 356678888888999999999999999999999887654 4444555543
No 43
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=22.12 E-value=1.8e+02 Score=24.26 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCC
Q 009662 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 205 p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
...+-++.+++.+..-|+.... ++-++.+.+.+..++..+.+....||+
T Consensus 48 d~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~~~~~~v~~~~f~ 99 (127)
T 3r0p_A 48 DFAVQAHQVFKNLRAVCEAAGGGLRDIVKLNVYLTDLANFPIVNEVMGQYFQ 99 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCGGGEEEEEEEESCGGGHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 3456666677777777776553 445555566677888888888888887
No 44
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=20.57 E-value=1.6e+02 Score=24.66 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCC
Q 009662 206 REPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 206 ~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
..+-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+.
T Consensus 37 ~~~Q~~~~l~nl~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 88 (124)
T 3gtz_A 37 AFEQTANTLAQIDAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWDAWVVA 88 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhCC
Confidence 344455555555555555442 3445555566778888888888888873
No 45
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=20.49 E-value=75 Score=28.37 Aligned_cols=48 Identities=15% Similarity=0.302 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCC
Q 009662 207 EPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 207 ~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
..-++.+++.|..-|+.... .+-++.+.+.+..++..+.+.+..||+.
T Consensus 70 ~~Qt~~~l~Ni~aiL~~aG~~l~~Vvkvtvyl~d~~df~~~n~v~~~~f~~ 120 (165)
T 3lyb_A 70 LAQSWYVLESIRRTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPD 120 (165)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHhcCChhHhEEEEEEECCHHHhHHHHHHHHHHcCC
Confidence 34445555555555555442 3445555566778888888888888873
No 46
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=20.11 E-value=2.4e+02 Score=23.88 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCC
Q 009662 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 205 p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
...+-++.+++.+..-|+.... ++-++.+.+.+..++..+.+.+..||+.
T Consensus 49 d~~~Q~~~~l~ni~~~L~~aG~~l~~vvk~~vyl~d~~d~~~~n~~~~~~f~~ 101 (136)
T 1qah_A 49 GVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQG 101 (136)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccCccHHHHHHHHHHHcCC
Confidence 4556666666677777776543 3445555566778898888888889963
No 47
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=20.02 E-value=2.5e+02 Score=23.25 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCCC
Q 009662 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 205 p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
....-++.+++.+..-|+.... ++-++.+.+.+..++..+.+.+..||+.
T Consensus 44 ~~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~~~~~~~~f~~ 96 (124)
T 2cvl_A 44 DIRVQTERVMENLKAVLEAAGSGLSRVVQTTCFLADMEDFPGFNEVYARYFTP 96 (124)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChHHHHHHHHHHHHHcCC
Confidence 3456666677777777776553 3444555566678888888888888864
No 48
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=20.00 E-value=1.3e+02 Score=25.33 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CceEEEEEecCchhHHHHHHhccccCC
Q 009662 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 205 p~~~~A~i~l~ti~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
...+-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+
T Consensus 45 d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~ 96 (128)
T 1qu9_A 45 DVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFT 96 (128)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 4555666666777777776543 344455556667888887777777775
Done!