BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009663
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 402 RAGRFEEALEVV-KGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYG 459
+ G ++EA+E K ++++P+ W +L N G D A +K +E+DPNN
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80
Query: 460 IMLANIYGELGKWDE 474
L N Y + G +DE
Sbjct: 81 YNLGNAYYKQGDYDE 95
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 402 RAGRFEEALEVV-KGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456
+ G ++EA+E K ++++P+ W +L N G D A +K +E+DPNN
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
W +L N G D A +K +E+DPNN L N Y + G +DE
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 402 RAGRFEEALEVV-KGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYG 459
+ G ++EA+E K +++ P+ W +L N G D A +K +E+ PNN
Sbjct: 21 KQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAW 80
Query: 460 IMLANIYGELGKWDE 474
L N Y + G +DE
Sbjct: 81 YNLGNAYYKQGDYDE 95
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVV-KGM 416
+L NA G ++ Y++ K ++P+ E + L + + G ++EA+E K +
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQ---KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 417 KIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
+++P W +L N G D A +K +E+DP + L N Y + G +DE
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIH 273
W+S+I T+N +++G + N+R A A+GH ++QLG+
Sbjct: 664 VWDSIIQQATKNVDILKDPETVKQLGSILKTNVR--------ACKAVGHPFVIQLGR--- 712
Query: 274 GYVYRNGLDLDSFIS---NALIDMYGKCGS---LKEARRAFDRNSKKRLTSWNSMIN 324
+Y + L++ +S +A I G+ + L + R R + K ++ W S N
Sbjct: 713 --IYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSN 767
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIH 273
W+S+I T+N +++G + N+R A A+GH ++QLG+
Sbjct: 666 VWDSIIQQATKNVDILKDPETVKQLGSILKTNVR--------ACKAVGHPFVIQLGR--- 714
Query: 274 GYVYRNGLDLDSFIS---NALIDMYGKCGS---LKEARRAFDRNSKKRLTSWNSMIN 324
+Y + L++ +S +A I G+ + L + R R + K ++ W S N
Sbjct: 715 --IYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSN 769
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 402 RAGRFEEALEVV-KGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456
+ G ++EA+E K ++++P+ W +L N G D A +K +E+DPNN
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
W +L N G D A +K +E+DPNN L N Y + G +DE
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
>pdb|2GOY|A Chain A, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|B Chain B, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|C Chain C, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|D Chain D, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|E Chain E, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|F Chain F, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|G Chain G, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|H Chain H, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
Length = 275
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 378 KLMTKTYRIEPQI-EHYGCLVDLLGRAGRFEEALEVVKGM 416
+L +TYR Q+ EHYG +D+L R E L KG+
Sbjct: 89 RLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGL 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,192,200
Number of Sequences: 62578
Number of extensions: 624839
Number of successful extensions: 1326
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 19
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)