Query 009663
Match_columns 529
No_of_seqs 568 out of 3149
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 15:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.3E-74 5E-79 606.1 57.4 507 9-527 183-762 (857)
2 PLN03081 pentatricopeptide (PP 100.0 8.2E-73 1.8E-77 580.6 57.0 502 12-527 89-599 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 7.7E-65 1.7E-69 534.0 49.2 493 10-525 83-651 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.2E-63 4.9E-68 513.0 54.5 501 7-529 367-910 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.5E-61 5.4E-66 497.9 50.9 462 14-492 410-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.1E-58 6.7E-63 472.8 42.7 466 11-493 121-612 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-30 1E-34 276.6 48.9 449 51-527 437-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-29 6.7E-34 270.2 51.1 451 15-484 436-899 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 1.5E-23 3.2E-28 193.4 28.5 430 14-466 19-500 (966)
10 PRK11447 cellulose synthase su 99.9 1.6E-21 3.5E-26 211.1 48.8 153 323-485 468-666 (1157)
11 PRK11447 cellulose synthase su 99.9 2.7E-21 5.8E-26 209.4 49.6 451 17-487 119-702 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 6.1E-22 1.3E-26 182.8 28.2 428 42-488 28-488 (966)
13 PRK09782 bacteriophage N4 rece 99.9 5E-19 1.1E-23 183.4 50.6 214 264-487 490-708 (987)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-19 3.3E-24 183.9 41.5 251 225-486 307-572 (615)
15 PRK11788 tetratricopeptide rep 99.9 1.3E-20 2.8E-25 182.3 28.1 290 192-493 46-355 (389)
16 PRK10049 pgaA outer membrane p 99.9 4.1E-18 8.9E-23 176.6 43.5 399 44-486 14-457 (765)
17 PRK09782 bacteriophage N4 rece 99.9 8.9E-18 1.9E-22 174.2 45.5 257 216-488 481-743 (987)
18 PRK15174 Vi polysaccharide exp 99.9 5.6E-19 1.2E-23 179.1 35.6 341 118-485 46-403 (656)
19 PRK11788 tetratricopeptide rep 99.9 1.2E-19 2.6E-24 175.5 28.2 285 92-390 49-353 (389)
20 PRK10049 pgaA outer membrane p 99.9 1E-17 2.2E-22 173.6 43.8 422 6-460 11-465 (765)
21 PRK15174 Vi polysaccharide exp 99.9 3.3E-18 7.2E-23 173.5 34.3 321 153-488 46-384 (656)
22 PRK14574 hmsH outer membrane p 99.9 8.4E-17 1.8E-21 163.7 43.9 427 21-459 45-521 (822)
23 TIGR00990 3a0801s09 mitochondr 99.8 6.9E-17 1.5E-21 164.6 40.6 390 48-456 130-576 (615)
24 KOG2002 TPR-containing nuclear 99.8 3.7E-15 7.9E-20 145.6 35.5 185 299-488 544-748 (1018)
25 PRK14574 hmsH outer membrane p 99.8 2.6E-14 5.5E-19 145.8 40.5 426 50-488 39-516 (822)
26 KOG2002 TPR-containing nuclear 99.8 1.2E-14 2.7E-19 142.0 35.5 129 332-466 628-760 (1018)
27 KOG4422 Uncharacterized conser 99.7 1.5E-13 3.2E-18 122.6 37.9 412 12-452 118-591 (625)
28 KOG0495 HAT repeat protein [RN 99.7 9.7E-13 2.1E-17 123.5 43.3 365 116-498 518-891 (913)
29 KOG2003 TPR repeat-containing 99.7 2.9E-14 6.2E-19 127.9 30.8 413 43-471 199-709 (840)
30 PF13429 TPR_15: Tetratricopep 99.7 1.6E-16 3.5E-21 145.5 11.5 258 217-484 13-276 (280)
31 KOG2076 RNA polymerase III tra 99.7 6.8E-14 1.5E-18 136.0 29.0 133 362-495 385-522 (895)
32 KOG1915 Cell cycle control pro 99.7 2.1E-12 4.5E-17 116.8 35.3 433 76-528 72-536 (677)
33 KOG1126 DNA-binding cell divis 99.7 2.8E-14 6E-19 134.5 23.1 280 194-487 332-622 (638)
34 KOG2076 RNA polymerase III tra 99.7 1.6E-11 3.5E-16 119.8 42.0 458 20-487 149-736 (895)
35 KOG0495 HAT repeat protein [RN 99.6 3.4E-11 7.4E-16 113.3 41.6 461 30-525 366-877 (913)
36 KOG2003 TPR repeat-containing 99.6 2.6E-13 5.6E-18 121.9 26.2 403 27-447 218-718 (840)
37 PRK10747 putative protoheme IX 99.6 3.1E-13 6.7E-18 129.6 28.8 275 194-484 97-389 (398)
38 KOG4422 Uncharacterized conser 99.6 1E-12 2.2E-17 117.3 29.1 348 41-416 203-587 (625)
39 KOG1155 Anaphase-promoting com 99.6 2.3E-12 5E-17 116.3 30.9 328 145-485 160-495 (559)
40 KOG1915 Cell cycle control pro 99.6 2.7E-12 5.9E-17 116.1 31.2 393 57-465 85-549 (677)
41 KOG0547 Translocase of outer m 99.6 4.1E-12 8.8E-17 115.5 31.1 215 260-483 336-564 (606)
42 KOG1126 DNA-binding cell divis 99.6 2E-13 4.3E-18 128.8 21.5 275 165-455 334-624 (638)
43 KOG1173 Anaphase-promoting com 99.6 8.5E-12 1.8E-16 115.6 31.0 428 39-485 43-518 (611)
44 PRK10747 putative protoheme IX 99.6 1.3E-11 2.8E-16 118.4 30.8 274 162-451 97-390 (398)
45 TIGR00540 hemY_coli hemY prote 99.6 1.8E-11 4E-16 118.1 31.8 272 165-449 99-397 (409)
46 KOG1155 Anaphase-promoting com 99.6 5.4E-11 1.2E-15 107.6 31.7 358 111-485 161-536 (559)
47 TIGR00540 hemY_coli hemY prote 99.5 1.7E-11 3.7E-16 118.3 29.4 283 192-484 95-398 (409)
48 PF13429 TPR_15: Tetratricopep 99.5 6.4E-14 1.4E-18 128.4 11.4 252 121-381 15-275 (280)
49 COG2956 Predicted N-acetylgluc 99.5 9E-11 2E-15 101.4 26.7 278 79-401 38-326 (389)
50 COG2956 Predicted N-acetylgluc 99.5 2.3E-11 4.9E-16 105.1 22.3 228 260-495 117-357 (389)
51 COG3071 HemY Uncharacterized e 99.5 2.6E-10 5.6E-15 101.7 29.2 276 194-483 97-388 (400)
52 COG3071 HemY Uncharacterized e 99.4 7.5E-10 1.6E-14 98.8 30.2 249 189-450 126-389 (400)
53 KOG4318 Bicoid mRNA stability 99.4 6.5E-10 1.4E-14 108.4 32.2 424 31-489 11-598 (1088)
54 TIGR02521 type_IV_pilW type IV 99.4 8E-11 1.7E-15 105.1 22.5 197 285-485 31-232 (234)
55 KOG0547 Translocase of outer m 99.4 1.9E-09 4.2E-14 98.5 29.5 156 325-487 335-493 (606)
56 KOG1174 Anaphase-promoting com 99.4 1.3E-08 2.7E-13 91.3 32.2 272 179-462 230-511 (564)
57 KOG1156 N-terminal acetyltrans 99.4 3.7E-08 8.1E-13 93.4 36.6 411 57-483 53-509 (700)
58 KOG4318 Bicoid mRNA stability 99.3 4.3E-10 9.3E-15 109.7 23.5 334 100-469 12-392 (1088)
59 KOG1840 Kinesin light chain [C 99.3 3.7E-10 7.9E-15 108.0 22.6 232 252-483 201-477 (508)
60 KOG3785 Uncharacterized conser 99.3 7.9E-09 1.7E-13 90.7 28.1 178 52-240 29-213 (557)
61 KOG1129 TPR repeat-containing 99.3 1.4E-10 3.1E-15 100.3 16.8 231 249-487 222-460 (478)
62 KOG4162 Predicted calmodulin-b 99.3 2.9E-08 6.3E-13 96.0 33.3 424 39-487 317-785 (799)
63 KOG1173 Anaphase-promoting com 99.3 4.9E-09 1.1E-13 97.7 26.2 279 180-468 243-535 (611)
64 KOG2047 mRNA splicing factor [ 99.3 2.5E-07 5.4E-12 87.8 36.6 181 330-522 525-717 (835)
65 PRK12370 invasion protein regu 99.3 2.4E-09 5.1E-14 107.6 24.5 258 211-487 255-537 (553)
66 TIGR02521 type_IV_pilW type IV 99.3 3.4E-09 7.3E-14 94.5 23.3 193 253-452 34-233 (234)
67 PRK12370 invasion protein regu 99.2 1.3E-09 2.7E-14 109.5 21.6 212 264-486 275-503 (553)
68 KOG1840 Kinesin light chain [C 99.2 2.8E-09 6E-14 102.1 22.4 237 214-450 201-478 (508)
69 KOG2376 Signal recognition par 99.2 8.3E-07 1.8E-11 83.6 37.4 437 14-482 13-517 (652)
70 KOG1129 TPR repeat-containing 99.2 4.3E-10 9.3E-15 97.4 14.0 232 216-458 227-465 (478)
71 KOG4162 Predicted calmodulin-b 99.2 4.7E-08 1E-12 94.6 28.9 425 8-457 321-789 (799)
72 KOG0624 dsRNA-activated protei 99.2 9E-08 2E-12 83.9 27.7 300 148-462 37-381 (504)
73 PF13041 PPR_2: PPR repeat fam 99.2 4E-11 8.7E-16 76.9 5.5 50 75-126 1-50 (50)
74 PF13041 PPR_2: PPR repeat fam 99.2 9.9E-11 2.1E-15 75.1 6.7 50 314-366 1-50 (50)
75 KOG1156 N-terminal acetyltrans 99.2 6E-07 1.3E-11 85.5 33.8 375 92-487 55-470 (700)
76 COG3063 PilF Tfp pilus assembl 99.2 4.5E-09 9.9E-14 87.0 17.4 189 289-482 39-233 (250)
77 PRK11189 lipoprotein NlpI; Pro 99.2 3.4E-09 7.5E-14 97.3 18.8 232 221-465 35-280 (296)
78 PRK11189 lipoprotein NlpI; Pro 99.2 2.2E-08 4.9E-13 92.0 24.0 211 265-487 41-267 (296)
79 KOG1174 Anaphase-promoting com 99.1 9.4E-07 2E-11 79.6 32.4 282 192-487 207-502 (564)
80 KOG2376 Signal recognition par 99.1 8.5E-07 1.8E-11 83.6 33.3 412 51-486 18-488 (652)
81 KOG3785 Uncharacterized conser 99.1 5.1E-07 1.1E-11 79.6 29.2 49 92-143 165-214 (557)
82 KOG4340 Uncharacterized conser 99.1 2E-07 4.3E-12 80.2 26.0 388 80-488 13-446 (459)
83 KOG1125 TPR repeat-containing 99.1 2.3E-09 4.9E-14 100.2 15.6 223 260-485 295-527 (579)
84 KOG0548 Molecular co-chaperone 99.1 1.8E-07 3.9E-12 87.1 27.4 216 254-486 228-456 (539)
85 PF12569 NARP1: NMDA receptor- 99.1 8E-08 1.7E-12 93.4 26.5 255 221-487 13-293 (517)
86 PF12569 NARP1: NMDA receptor- 99.1 1.4E-07 3E-12 91.8 27.9 285 191-485 14-334 (517)
87 COG3063 PilF Tfp pilus assembl 99.1 4.4E-08 9.5E-13 81.2 19.4 198 253-457 38-242 (250)
88 PF04733 Coatomer_E: Coatomer 99.1 1.3E-08 2.8E-13 92.1 17.7 246 191-454 11-268 (290)
89 KOG3616 Selective LIM binding 99.0 2.9E-07 6.2E-12 88.6 26.4 372 61-495 546-947 (1636)
90 KOG0624 dsRNA-activated protei 99.0 2.9E-07 6.3E-12 80.8 24.2 292 185-488 42-373 (504)
91 KOG2047 mRNA splicing factor [ 99.0 4.3E-06 9.3E-11 79.7 33.4 426 77-525 102-612 (835)
92 PF04733 Coatomer_E: Coatomer 99.0 4.6E-08 9.9E-13 88.5 18.3 245 220-485 9-265 (290)
93 KOG0985 Vesicle coat protein c 99.0 1.8E-05 3.9E-10 79.3 35.6 390 31-477 968-1375(1666)
94 cd05804 StaR_like StaR_like; a 98.9 2.8E-06 6E-11 81.2 29.5 256 220-486 51-337 (355)
95 KOG4340 Uncharacterized conser 98.9 4.8E-07 1E-11 77.9 20.0 182 152-344 13-206 (459)
96 KOG3617 WD40 and TPR repeat-co 98.9 6.3E-06 1.4E-10 80.7 29.7 151 44-209 725-886 (1416)
97 KOG3617 WD40 and TPR repeat-co 98.9 1.6E-06 3.4E-11 84.8 25.4 334 113-483 725-1107(1416)
98 KOG1127 TPR repeat-containing 98.9 9.9E-06 2.1E-10 81.1 31.3 438 28-482 474-993 (1238)
99 KOG3616 Selective LIM binding 98.9 5.6E-06 1.2E-10 80.1 28.0 398 40-491 584-1030(1636)
100 PRK04841 transcriptional regul 98.9 6.7E-06 1.5E-10 89.0 32.2 328 157-486 382-761 (903)
101 PRK10370 formate-dependent nit 98.8 4.8E-07 1E-11 77.3 18.4 148 323-487 23-175 (198)
102 KOG1070 rRNA processing protei 98.8 1.9E-07 4.1E-12 96.0 17.8 225 284-521 1457-1693(1710)
103 cd05804 StaR_like StaR_like; a 98.8 9.9E-06 2.1E-10 77.4 29.1 143 92-239 57-213 (355)
104 TIGR03302 OM_YfiO outer membra 98.8 4.5E-07 9.8E-12 80.8 18.5 182 284-486 32-233 (235)
105 KOG0985 Vesicle coat protein c 98.8 3.2E-05 6.9E-10 77.7 30.8 357 80-482 841-1246(1666)
106 PRK15359 type III secretion sy 98.8 1.3E-07 2.9E-12 76.3 12.4 94 393-486 27-122 (144)
107 KOG0548 Molecular co-chaperone 98.8 3.2E-05 6.8E-10 72.6 28.2 235 215-468 227-472 (539)
108 PRK15359 type III secretion sy 98.7 3E-07 6.6E-12 74.3 13.3 122 336-467 13-137 (144)
109 KOG1128 Uncharacterized conser 98.7 2.7E-06 5.9E-11 82.3 21.5 220 282-528 395-616 (777)
110 KOG1125 TPR repeat-containing 98.7 9.1E-07 2E-11 83.3 16.9 249 220-478 293-564 (579)
111 PRK15179 Vi polysaccharide bio 98.7 2.7E-06 5.9E-11 86.2 20.6 129 316-452 86-218 (694)
112 PRK04841 transcriptional regul 98.7 0.0012 2.6E-08 71.8 44.0 333 152-485 344-720 (903)
113 KOG3081 Vesicle coat complex C 98.7 3.1E-05 6.7E-10 66.1 23.0 244 194-454 21-274 (299)
114 KOG3081 Vesicle coat complex C 98.7 8.5E-06 1.8E-10 69.4 19.5 245 219-485 15-271 (299)
115 KOG1128 Uncharacterized conser 98.6 4.6E-06 1E-10 80.8 19.3 218 247-486 395-617 (777)
116 COG5010 TadD Flp pilus assembl 98.6 9.2E-06 2E-10 69.3 18.8 156 320-481 70-227 (257)
117 PLN02789 farnesyltranstransfer 98.6 1.4E-05 3.1E-10 73.4 21.7 212 263-482 50-299 (320)
118 KOG1914 mRNA cleavage and poly 98.6 0.00057 1.2E-08 64.5 31.8 131 317-453 367-503 (656)
119 KOG1070 rRNA processing protei 98.6 3.3E-05 7.1E-10 80.2 24.0 242 228-478 1441-1693(1710)
120 KOG1914 mRNA cleavage and poly 98.5 0.00036 7.7E-09 65.8 28.4 185 332-527 309-500 (656)
121 PRK10370 formate-dependent nit 98.5 8.9E-06 1.9E-10 69.5 16.8 153 292-459 23-181 (198)
122 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.7E-12 53.8 4.3 32 385-416 2-33 (34)
123 TIGR02552 LcrH_SycD type III s 98.5 2.9E-06 6.2E-11 68.2 12.7 101 386-486 12-115 (135)
124 KOG1127 TPR repeat-containing 98.5 2E-05 4.3E-10 79.1 20.5 375 92-481 472-909 (1238)
125 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.6E-12 53.8 3.8 34 39-73 1-34 (34)
126 TIGR03302 OM_YfiO outer membra 98.5 1.4E-05 3E-10 71.3 18.0 183 247-453 30-234 (235)
127 COG5010 TadD Flp pilus assembl 98.5 2.1E-05 4.5E-10 67.2 17.2 136 350-487 62-199 (257)
128 PRK15363 pathogenicity island 98.5 2.4E-06 5.3E-11 67.7 10.8 97 390-486 35-133 (157)
129 PLN02789 farnesyltranstransfer 98.5 1.5E-05 3.3E-10 73.2 17.4 191 291-488 43-253 (320)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1E-05 2.2E-10 75.9 15.0 124 355-483 170-295 (395)
131 KOG3060 Uncharacterized conser 98.4 9.7E-05 2.1E-09 62.7 18.2 194 262-461 24-230 (289)
132 KOG2053 Mitochondrial inherita 98.4 0.0043 9.3E-08 62.4 34.7 405 61-490 24-507 (932)
133 COG4783 Putative Zn-dependent 98.3 0.0002 4.4E-09 66.7 21.2 115 366-483 318-435 (484)
134 KOG3060 Uncharacterized conser 98.3 0.00036 7.7E-09 59.4 20.5 189 224-420 24-222 (289)
135 PRK14720 transcript cleavage f 98.3 0.0006 1.3E-08 70.4 25.9 55 252-308 118-172 (906)
136 COG4783 Putative Zn-dependent 98.3 0.00021 4.5E-09 66.7 19.9 145 317-486 307-455 (484)
137 PRK14720 transcript cleavage f 98.3 0.00015 3.2E-09 74.7 20.9 232 180-467 30-268 (906)
138 PF09976 TPR_21: Tetratricopep 98.3 5.3E-05 1.2E-09 61.5 14.4 124 357-482 15-144 (145)
139 PF12895 Apc3: Anaphase-promot 98.2 2E-06 4.4E-11 62.3 5.1 78 403-481 2-83 (84)
140 TIGR02552 LcrH_SycD type III s 98.2 5.8E-05 1.3E-09 60.6 14.2 109 350-460 12-123 (135)
141 KOG0553 TPR repeat-containing 98.2 1.3E-05 2.8E-10 69.8 10.7 107 364-473 91-200 (304)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.8E-05 1E-09 71.5 15.0 127 287-420 171-298 (395)
143 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.2E-05 6.9E-10 60.5 11.4 93 393-485 5-105 (119)
144 PF13414 TPR_11: TPR repeat; P 98.2 7.1E-06 1.5E-10 56.8 6.6 65 421-485 2-67 (69)
145 cd00189 TPR Tetratricopeptide 98.1 3.5E-05 7.6E-10 57.2 10.6 94 393-486 3-98 (100)
146 PRK15179 Vi polysaccharide bio 98.1 0.00012 2.6E-09 74.5 17.0 141 41-187 82-228 (694)
147 TIGR02795 tol_pal_ybgF tol-pal 98.1 9.3E-05 2E-09 57.8 12.5 105 356-460 4-114 (119)
148 PF09976 TPR_21: Tetratricopep 98.1 0.00026 5.5E-09 57.5 15.2 124 319-448 15-144 (145)
149 PF13432 TPR_16: Tetratricopep 98.1 1.4E-05 3E-10 54.6 6.1 60 428-487 3-62 (65)
150 COG4235 Cytochrome c biogenesi 98.0 0.00012 2.6E-09 64.4 12.3 109 387-495 152-266 (287)
151 PLN03088 SGT1, suppressor of 98.0 8.9E-05 1.9E-09 70.0 11.8 107 360-469 8-117 (356)
152 PLN03088 SGT1, suppressor of 98.0 0.00015 3.3E-09 68.4 13.3 102 321-429 7-110 (356)
153 TIGR00756 PPR pentatricopeptid 97.9 1.7E-05 3.7E-10 46.2 4.2 33 79-113 2-34 (35)
154 PRK02603 photosystem I assembl 97.9 0.00027 5.9E-09 59.3 12.7 96 390-485 35-149 (172)
155 CHL00033 ycf3 photosystem I as 97.9 0.00016 3.4E-09 60.5 11.2 94 389-482 34-139 (168)
156 PF14559 TPR_19: Tetratricopep 97.9 3E-05 6.5E-10 53.5 5.1 55 433-487 2-56 (68)
157 KOG0553 TPR repeat-containing 97.9 6.5E-05 1.4E-09 65.6 8.1 88 399-486 90-179 (304)
158 PF13812 PPR_3: Pentatricopept 97.9 2.8E-05 6.1E-10 44.9 4.2 33 78-112 2-34 (34)
159 TIGR00756 PPR pentatricopeptid 97.8 3.2E-05 7E-10 45.0 4.3 33 318-353 2-34 (35)
160 PF05843 Suf: Suppressor of fo 97.8 0.0014 3E-08 59.7 16.5 138 317-459 2-144 (280)
161 PF04840 Vps16_C: Vps16, C-ter 97.8 0.02 4.3E-07 52.8 23.9 111 355-482 178-288 (319)
162 COG4700 Uncharacterized protei 97.8 0.002 4.4E-08 52.1 15.1 135 350-486 85-223 (251)
163 PF13432 TPR_16: Tetratricopep 97.8 7.9E-05 1.7E-09 50.8 6.4 61 396-456 3-65 (65)
164 PF12895 Apc3: Anaphase-promot 97.8 7.2E-05 1.6E-09 54.1 6.5 80 368-447 3-83 (84)
165 PF13371 TPR_9: Tetratricopept 97.8 9.7E-05 2.1E-09 51.8 6.7 58 430-487 3-60 (73)
166 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.032 6.9E-07 51.9 28.7 404 30-455 29-535 (660)
167 PRK15331 chaperone protein Sic 97.8 0.00043 9.2E-09 55.5 10.7 90 396-485 43-134 (165)
168 PRK10153 DNA-binding transcrip 97.8 0.0016 3.4E-08 64.4 17.0 140 313-457 334-488 (517)
169 PF14938 SNAP: Soluble NSF att 97.8 0.015 3.2E-07 53.3 22.2 108 318-429 157-275 (282)
170 PF07079 DUF1347: Protein of u 97.8 0.036 7.9E-07 51.7 35.6 441 19-484 15-523 (549)
171 PF13812 PPR_3: Pentatricopept 97.7 5.8E-05 1.3E-09 43.5 4.2 32 318-352 3-34 (34)
172 KOG0550 Molecular chaperone (D 97.7 0.0014 3E-08 59.9 14.4 155 324-487 177-352 (486)
173 cd00189 TPR Tetratricopeptide 97.7 0.00056 1.2E-08 50.5 10.4 92 359-453 5-99 (100)
174 PRK02603 photosystem I assembl 97.7 0.0016 3.4E-08 54.7 13.5 114 318-455 37-153 (172)
175 PRK10866 outer membrane biogen 97.7 0.02 4.4E-07 50.8 21.0 77 211-292 31-111 (243)
176 KOG2053 Mitochondrial inherita 97.7 0.085 1.8E-06 53.6 40.4 191 45-241 41-255 (932)
177 COG4700 Uncharacterized protei 97.7 0.00055 1.2E-08 55.3 9.8 144 379-528 78-226 (251)
178 PF14938 SNAP: Soluble NSF att 97.7 0.0014 3.1E-08 59.9 13.9 127 356-482 116-263 (282)
179 KOG2041 WD40 repeat protein [G 97.6 0.078 1.7E-06 52.2 27.4 185 128-344 748-951 (1189)
180 KOG1538 Uncharacterized conser 97.6 0.015 3.2E-07 56.5 19.7 86 355-450 748-845 (1081)
181 COG3898 Uncharacterized membra 97.6 0.06 1.3E-06 49.3 24.8 283 183-485 84-392 (531)
182 PRK15363 pathogenicity island 97.6 0.00099 2.1E-08 53.2 10.1 95 355-452 36-133 (157)
183 PRK10866 outer membrane biogen 97.6 0.017 3.7E-07 51.2 19.2 178 84-276 39-238 (243)
184 PRK10153 DNA-binding transcrip 97.6 0.0031 6.7E-08 62.4 15.8 137 348-488 331-485 (517)
185 KOG0550 Molecular chaperone (D 97.6 0.012 2.6E-07 54.0 17.9 90 324-416 257-347 (486)
186 PF12688 TPR_5: Tetratrico pep 97.6 0.0019 4E-08 49.7 11.2 54 427-480 43-99 (120)
187 PF14559 TPR_19: Tetratricopep 97.5 0.00016 3.4E-09 49.8 4.7 47 367-416 4-51 (68)
188 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.6E-09 41.1 3.5 29 79-108 2-30 (31)
189 PF05843 Suf: Suppressor of fo 97.5 0.0012 2.7E-08 60.0 11.8 129 355-485 2-136 (280)
190 PRK10803 tol-pal system protei 97.5 0.001 2.2E-08 59.4 10.5 93 393-485 146-246 (263)
191 PF13414 TPR_11: TPR repeat; P 97.5 0.00025 5.3E-09 49.0 5.2 65 389-453 2-69 (69)
192 PF08579 RPM2: Mitochondrial r 97.5 0.00097 2.1E-08 49.2 7.9 82 80-162 28-117 (120)
193 PF10037 MRP-S27: Mitochondria 97.4 0.0021 4.5E-08 60.9 11.6 106 285-394 66-177 (429)
194 COG3898 Uncharacterized membra 97.4 0.1 2.3E-06 47.8 26.4 275 161-450 96-391 (531)
195 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.001 2.2E-08 62.4 9.1 65 421-485 74-141 (453)
196 PF08579 RPM2: Mitochondrial r 97.4 0.0036 7.8E-08 46.3 9.9 81 318-402 27-116 (120)
197 KOG1130 Predicted G-alpha GTPa 97.4 0.0011 2.4E-08 60.4 8.8 129 356-484 197-343 (639)
198 PF13371 TPR_9: Tetratricopept 97.4 0.0009 2E-08 46.7 6.7 66 397-462 2-69 (73)
199 PF01535 PPR: PPR repeat; Int 97.3 0.00026 5.7E-09 39.6 3.2 27 318-344 2-28 (31)
200 PF13431 TPR_17: Tetratricopep 97.3 0.00021 4.7E-09 40.8 2.5 33 444-476 1-33 (34)
201 PF13428 TPR_14: Tetratricopep 97.3 0.00057 1.2E-08 42.0 4.6 42 423-464 2-43 (44)
202 CHL00033 ycf3 photosystem I as 97.3 0.0069 1.5E-07 50.6 12.5 61 318-381 37-99 (168)
203 PF10037 MRP-S27: Mitochondria 97.3 0.0025 5.5E-08 60.4 10.6 96 80-177 69-165 (429)
204 KOG2041 WD40 repeat protein [G 97.2 0.14 2.9E-06 50.7 21.6 193 262-488 746-955 (1189)
205 PF13525 YfiO: Outer membrane 97.2 0.077 1.7E-06 45.8 18.7 182 215-409 8-197 (203)
206 PRK10803 tol-pal system protei 97.2 0.006 1.3E-07 54.5 11.9 100 355-457 144-252 (263)
207 KOG2796 Uncharacterized conser 97.2 0.025 5.5E-07 48.7 14.7 133 319-454 180-318 (366)
208 PF06239 ECSIT: Evolutionarily 97.2 0.0039 8.5E-08 52.3 9.5 97 66-163 34-152 (228)
209 PF13281 DUF4071: Domain of un 97.1 0.11 2.4E-06 48.5 19.5 160 290-455 146-338 (374)
210 PF13424 TPR_12: Tetratricopep 97.1 0.0013 2.9E-08 46.6 5.4 62 423-484 6-74 (78)
211 PF12688 TPR_5: Tetratrico pep 97.1 0.02 4.3E-07 44.1 11.9 90 218-310 7-100 (120)
212 KOG1538 Uncharacterized conser 97.0 0.17 3.7E-06 49.5 19.9 100 302-416 733-843 (1081)
213 PF06239 ECSIT: Evolutionarily 97.0 0.013 2.7E-07 49.4 10.6 90 312-405 43-153 (228)
214 PF13525 YfiO: Outer membrane 96.9 0.032 7E-07 48.1 13.5 165 292-476 12-198 (203)
215 KOG0543 FKBP-type peptidyl-pro 96.9 0.022 4.7E-07 52.5 12.6 95 391-485 258-355 (397)
216 KOG2796 Uncharacterized conser 96.8 0.16 3.4E-06 44.1 15.8 149 333-492 166-322 (366)
217 COG1729 Uncharacterized protei 96.8 0.013 2.8E-07 51.2 9.6 59 428-486 184-245 (262)
218 PF03704 BTAD: Bacterial trans 96.7 0.0097 2.1E-07 48.3 8.5 68 424-491 64-136 (146)
219 PRK11906 transcriptional regul 96.7 0.041 9E-07 52.1 13.3 119 332-455 274-405 (458)
220 KOG2280 Vacuolar assembly/sort 96.7 0.8 1.7E-05 46.0 23.8 327 82-448 442-796 (829)
221 PF03704 BTAD: Bacterial trans 96.7 0.015 3.4E-07 47.1 9.3 57 394-450 66-124 (146)
222 PF12921 ATP13: Mitochondrial 96.7 0.032 6.9E-07 43.4 10.4 53 348-400 46-98 (126)
223 PF09205 DUF1955: Domain of un 96.7 0.12 2.6E-06 39.6 12.7 140 327-488 13-152 (161)
224 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.59 1.3E-05 44.0 26.5 413 67-488 30-534 (660)
225 KOG1130 Predicted G-alpha GTPa 96.7 0.0047 1E-07 56.5 6.3 256 85-344 25-343 (639)
226 PF04840 Vps16_C: Vps16, C-ter 96.6 0.55 1.2E-05 43.5 29.1 104 292-415 184-287 (319)
227 KOG1258 mRNA processing protei 96.6 0.77 1.7E-05 45.0 33.2 385 75-470 43-489 (577)
228 PF13424 TPR_12: Tetratricopep 96.6 0.0041 8.8E-08 44.1 4.8 61 391-451 6-75 (78)
229 PF13512 TPR_18: Tetratricopep 96.6 0.073 1.6E-06 41.9 11.8 62 397-458 17-83 (142)
230 COG4235 Cytochrome c biogenesi 96.6 0.13 2.8E-06 45.8 14.6 101 353-455 155-260 (287)
231 KOG0543 FKBP-type peptidyl-pro 96.6 0.032 6.9E-07 51.5 11.2 66 422-487 257-322 (397)
232 PRK11619 lytic murein transgly 96.6 1.1 2.3E-05 46.1 31.1 114 369-482 256-372 (644)
233 PF13512 TPR_18: Tetratricopep 96.4 0.14 3E-06 40.4 12.2 94 364-457 20-134 (142)
234 KOG2280 Vacuolar assembly/sort 96.4 1.3 2.8E-05 44.6 33.6 308 154-482 442-796 (829)
235 PF13281 DUF4071: Domain of un 96.2 0.75 1.6E-05 43.1 18.1 168 318-486 143-335 (374)
236 COG3118 Thioredoxin domain-con 96.1 0.16 3.5E-06 45.0 12.6 121 363-487 143-267 (304)
237 COG1729 Uncharacterized protei 96.1 0.18 3.9E-06 44.3 12.7 105 355-460 143-253 (262)
238 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.056 1.2E-06 51.2 10.3 97 389-488 74-177 (453)
239 PF12921 ATP13: Mitochondrial 96.1 0.12 2.5E-06 40.3 10.4 78 354-431 2-97 (126)
240 PF04053 Coatomer_WDAD: Coatom 96.0 0.29 6.2E-06 47.6 15.0 162 220-418 269-430 (443)
241 KOG1941 Acetylcholine receptor 96.0 0.2 4.4E-06 45.5 12.6 163 318-482 85-272 (518)
242 PRK15331 chaperone protein Sic 95.9 0.29 6.2E-06 39.6 12.0 90 361-454 44-136 (165)
243 PF07719 TPR_2: Tetratricopept 95.9 0.029 6.3E-07 31.9 4.9 33 423-455 2-34 (34)
244 COG3118 Thioredoxin domain-con 95.9 0.96 2.1E-05 40.3 16.0 171 303-478 121-294 (304)
245 PF10300 DUF3808: Protein of u 95.9 0.59 1.3E-05 46.1 16.7 116 367-485 246-376 (468)
246 PRK11906 transcriptional regul 95.8 0.68 1.5E-05 44.2 16.0 65 353-420 337-403 (458)
247 PF00515 TPR_1: Tetratricopept 95.8 0.024 5.3E-07 32.3 4.3 32 423-454 2-33 (34)
248 KOG3941 Intermediate in Toll s 95.7 0.19 4E-06 44.1 10.7 116 61-177 49-186 (406)
249 PF04053 Coatomer_WDAD: Coatom 95.6 0.74 1.6E-05 44.8 16.1 133 149-310 295-427 (443)
250 KOG4555 TPR repeat-containing 95.5 0.13 2.9E-06 39.2 8.3 89 399-487 52-146 (175)
251 KOG1585 Protein required for f 95.5 1.5 3.1E-05 38.0 18.9 199 253-479 34-250 (308)
252 KOG2066 Vacuolar assembly/sort 95.5 3.3 7.2E-05 42.1 24.2 143 150-316 393-536 (846)
253 KOG2610 Uncharacterized conser 95.5 0.52 1.1E-05 42.5 13.0 112 298-416 116-235 (491)
254 smart00299 CLH Clathrin heavy 95.4 1.1 2.4E-05 35.9 14.8 110 118-237 11-121 (140)
255 KOG2610 Uncharacterized conser 95.4 0.23 5E-06 44.6 10.5 162 327-494 114-285 (491)
256 COG0457 NrfG FOG: TPR repeat [ 95.3 1.8 3.8E-05 37.9 27.0 194 286-486 60-266 (291)
257 PF07079 DUF1347: Protein of u 95.3 2.7 5.8E-05 39.9 25.7 135 348-485 254-409 (549)
258 smart00299 CLH Clathrin heavy 95.2 1.3 2.8E-05 35.5 14.2 83 256-342 13-95 (140)
259 PF04184 ST7: ST7 protein; In 95.1 3.3 7.2E-05 39.9 20.1 56 322-380 265-321 (539)
260 KOG4234 TPR repeat-containing 95.0 0.18 3.9E-06 41.8 8.1 103 363-467 104-213 (271)
261 COG0457 NrfG FOG: TPR repeat [ 95.0 2.2 4.9E-05 37.2 24.5 197 250-454 59-268 (291)
262 KOG4555 TPR repeat-containing 94.9 0.1 2.3E-06 39.8 6.0 58 429-486 50-107 (175)
263 KOG2114 Vacuolar assembly/sort 94.8 2.4 5.2E-05 43.4 16.8 81 358-447 435-515 (933)
264 PF10300 DUF3808: Protein of u 94.5 0.32 6.9E-06 48.0 10.3 170 31-209 178-375 (468)
265 COG3629 DnrI DNA-binding trans 94.5 0.24 5.2E-06 44.2 8.4 59 392-450 155-215 (280)
266 COG4649 Uncharacterized protei 94.3 1.5 3.2E-05 35.7 11.5 118 327-450 69-195 (221)
267 PF08631 SPO22: Meiosis protei 94.2 4.4 9.6E-05 37.0 22.7 19 431-449 255-273 (278)
268 PF00637 Clathrin: Region in C 94.2 0.1 2.2E-06 42.0 5.2 86 119-208 12-97 (143)
269 KOG3941 Intermediate in Toll s 94.0 0.71 1.5E-05 40.6 9.9 108 305-416 54-185 (406)
270 COG4105 ComL DNA uptake lipopr 94.0 4 8.7E-05 35.8 19.8 83 213-296 35-117 (254)
271 PF09613 HrpB1_HrpK: Bacterial 94.0 2.8 6.1E-05 33.9 12.7 110 363-477 19-130 (160)
272 PF09205 DUF1955: Domain of un 93.9 2.4 5.1E-05 32.9 11.3 133 127-281 15-151 (161)
273 KOG0890 Protein kinase of the 93.9 16 0.00036 42.5 25.1 311 154-488 1388-1734(2382)
274 PF13181 TPR_8: Tetratricopept 93.7 0.16 3.5E-06 28.7 4.0 31 424-454 3-33 (34)
275 PF04184 ST7: ST7 protein; In 93.7 1.7 3.8E-05 41.8 12.7 55 428-482 265-321 (539)
276 PF13176 TPR_7: Tetratricopept 93.5 0.17 3.6E-06 29.2 3.8 25 459-483 2-26 (36)
277 PF02259 FAT: FAT domain; Int 93.4 7.2 0.00016 37.0 20.5 34 436-469 272-305 (352)
278 PRK09687 putative lyase; Provi 93.4 6.1 0.00013 36.0 27.1 86 173-263 29-118 (280)
279 TIGR02561 HrpB1_HrpK type III 93.4 0.66 1.4E-05 36.7 8.0 70 402-471 22-93 (153)
280 KOG1586 Protein required for f 93.4 4.7 0.0001 34.7 14.7 56 431-486 163-225 (288)
281 COG4649 Uncharacterized protei 93.3 1.5 3.3E-05 35.7 10.0 117 296-416 69-193 (221)
282 PF13176 TPR_7: Tetratricopept 93.2 0.19 4.2E-06 29.0 3.8 27 424-450 1-27 (36)
283 PF13428 TPR_14: Tetratricopep 93.1 0.2 4.3E-06 30.6 4.0 32 456-487 1-32 (44)
284 KOG1941 Acetylcholine receptor 93.1 7.2 0.00016 36.0 19.3 167 213-381 84-273 (518)
285 PRK09687 putative lyase; Provi 93.1 6.8 0.00015 35.7 26.9 222 42-279 34-263 (280)
286 KOG1585 Protein required for f 92.9 5.9 0.00013 34.5 14.4 207 41-272 23-249 (308)
287 PF09613 HrpB1_HrpK: Bacterial 92.9 1 2.2E-05 36.4 8.5 83 390-472 7-94 (160)
288 PF02259 FAT: FAT domain; Int 92.7 7.8 0.00017 36.7 16.3 68 420-487 144-215 (352)
289 PF13170 DUF4003: Protein of u 92.2 4.7 0.0001 37.0 13.1 149 8-159 55-227 (297)
290 PF10602 RPN7: 26S proteasome 91.9 2.2 4.7E-05 35.7 9.9 58 287-344 38-101 (177)
291 PF06552 TOM20_plant: Plant sp 91.9 2.4 5.3E-05 34.9 9.6 65 417-488 63-139 (186)
292 PF13374 TPR_10: Tetratricopep 91.7 0.49 1.1E-05 28.1 4.5 28 423-450 3-30 (42)
293 KOG4648 Uncharacterized conser 91.6 0.74 1.6E-05 41.7 7.0 91 364-457 107-200 (536)
294 KOG4234 TPR repeat-containing 91.6 3.3 7.1E-05 34.7 10.1 93 323-422 102-201 (271)
295 PF07035 Mic1: Colon cancer-as 91.6 6.8 0.00015 32.2 12.2 21 217-237 94-114 (167)
296 COG4105 ComL DNA uptake lipopr 91.5 9.2 0.0002 33.7 20.5 56 428-483 173-231 (254)
297 PF10602 RPN7: 26S proteasome 91.5 2.6 5.7E-05 35.3 10.0 93 390-482 36-139 (177)
298 KOG1258 mRNA processing protei 91.3 16 0.00036 36.2 28.7 185 211-404 296-489 (577)
299 PF07719 TPR_2: Tetratricopept 91.3 0.43 9.4E-06 26.8 3.7 30 457-486 2-31 (34)
300 PF13174 TPR_6: Tetratricopept 91.2 0.55 1.2E-05 26.1 4.1 27 428-454 6-32 (33)
301 COG4785 NlpI Lipoprotein NlpI, 90.9 9.3 0.0002 32.6 15.3 156 77-239 99-264 (297)
302 KOG1920 IkappaB kinase complex 90.9 27 0.00058 37.9 21.8 141 154-314 913-1055(1265)
303 PRK15180 Vi polysaccharide bio 90.8 4.4 9.6E-05 38.7 11.4 87 400-486 333-421 (831)
304 KOG2114 Vacuolar assembly/sort 90.8 23 0.00049 36.8 29.2 178 47-239 336-517 (933)
305 TIGR02561 HrpB1_HrpK type III 90.5 2.9 6.4E-05 33.2 8.5 77 355-434 8-89 (153)
306 KOG2066 Vacuolar assembly/sort 90.4 24 0.00051 36.4 24.2 67 359-437 639-705 (846)
307 COG2909 MalT ATP-dependent tra 90.4 26 0.00056 36.8 19.5 85 297-381 427-524 (894)
308 PF14561 TPR_20: Tetratricopep 90.3 0.17 3.6E-06 36.7 1.6 45 443-487 9-53 (90)
309 PF00515 TPR_1: Tetratricopept 90.2 0.64 1.4E-05 26.2 3.7 30 457-486 2-31 (34)
310 PF07721 TPR_4: Tetratricopept 90.1 0.5 1.1E-05 24.8 3.0 24 457-480 2-25 (26)
311 PRK10941 hypothetical protein; 90.1 4.1 9E-05 36.6 10.5 63 425-487 184-246 (269)
312 PF08631 SPO22: Meiosis protei 89.9 15 0.00033 33.5 24.3 159 318-483 86-273 (278)
313 KOG1464 COP9 signalosome, subu 89.8 14 0.0003 32.7 17.4 224 214-446 67-327 (440)
314 COG3947 Response regulator con 89.7 12 0.00026 33.6 12.4 61 424-484 281-341 (361)
315 COG3629 DnrI DNA-binding trans 89.7 2.4 5.3E-05 38.0 8.6 75 81-158 157-236 (280)
316 KOG0890 Protein kinase of the 89.3 52 0.0011 38.8 24.4 310 119-452 1388-1732(2382)
317 COG2909 MalT ATP-dependent tra 88.8 34 0.00073 36.0 28.4 216 260-481 425-684 (894)
318 KOG4648 Uncharacterized conser 88.7 1.1 2.4E-05 40.6 5.7 87 398-484 105-193 (536)
319 PF14853 Fis1_TPR_C: Fis1 C-te 88.7 1.7 3.7E-05 27.7 5.1 37 425-461 4-40 (53)
320 PF13174 TPR_6: Tetratricopept 88.6 0.6 1.3E-05 25.9 2.8 30 458-487 2-31 (33)
321 COG2976 Uncharacterized protei 88.6 14 0.0003 31.1 13.9 90 361-453 96-190 (207)
322 COG2976 Uncharacterized protei 88.5 14 0.0003 31.1 12.4 91 395-486 94-189 (207)
323 COG4785 NlpI Lipoprotein NlpI, 88.3 15 0.00033 31.4 13.8 160 316-487 99-268 (297)
324 PF13170 DUF4003: Protein of u 88.2 21 0.00045 32.8 14.3 136 228-399 78-226 (297)
325 KOG1920 IkappaB kinase complex 87.9 45 0.00098 36.3 28.6 111 292-416 915-1025(1265)
326 KOG4642 Chaperone-dependent E3 87.8 1.8 3.8E-05 37.3 6.1 83 365-450 21-106 (284)
327 TIGR02508 type_III_yscG type I 87.7 9 0.00019 28.1 8.8 86 26-118 21-106 (115)
328 PF07035 Mic1: Colon cancer-as 87.5 15 0.00032 30.3 13.6 132 98-238 14-146 (167)
329 PF00637 Clathrin: Region in C 87.4 0.91 2E-05 36.5 4.2 129 83-228 13-141 (143)
330 PF13431 TPR_17: Tetratricopep 87.3 0.78 1.7E-05 26.0 2.7 22 284-305 12-33 (34)
331 PF13181 TPR_8: Tetratricopept 87.2 1.5 3.3E-05 24.5 4.0 29 457-485 2-30 (34)
332 PF13374 TPR_10: Tetratricopep 87.2 1.3 2.8E-05 26.2 3.9 29 457-485 3-31 (42)
333 KOG4570 Uncharacterized conser 87.1 7.2 0.00016 35.2 9.5 101 279-383 58-164 (418)
334 KOG1586 Protein required for f 87.0 20 0.00042 31.2 15.1 59 396-454 160-227 (288)
335 smart00028 TPR Tetratricopepti 86.7 1.8 3.9E-05 23.2 4.2 30 424-453 3-32 (34)
336 PF04910 Tcf25: Transcriptiona 86.5 29 0.00063 33.0 14.2 64 421-484 99-167 (360)
337 PF10345 Cohesin_load: Cohesin 86.5 44 0.00095 34.7 27.5 49 366-414 373-428 (608)
338 KOG0276 Vesicle coat complex C 86.3 14 0.00031 36.7 11.8 98 366-481 649-746 (794)
339 TIGR03504 FimV_Cterm FimV C-te 86.1 1.6 3.5E-05 26.5 3.7 27 460-486 3-29 (44)
340 KOG2063 Vacuolar assembly/sort 85.8 53 0.0012 35.1 16.9 50 17-73 482-531 (877)
341 PF04097 Nic96: Nup93/Nic96; 85.5 48 0.001 34.3 21.6 213 77-312 112-354 (613)
342 PRK15180 Vi polysaccharide bio 85.0 39 0.00084 32.8 26.2 119 22-146 301-423 (831)
343 PF13929 mRNA_stabil: mRNA sta 85.0 13 0.00029 33.4 10.2 111 62-175 144-263 (292)
344 PF02284 COX5A: Cytochrome c o 84.6 9.5 0.00021 28.1 7.5 60 334-398 28-87 (108)
345 PRK11619 lytic murein transgly 84.4 55 0.0012 34.0 36.7 209 266-490 295-510 (644)
346 KOG4570 Uncharacterized conser 84.2 8 0.00017 35.0 8.5 102 39-144 58-165 (418)
347 COG4455 ImpE Protein of avirul 84.0 5.2 0.00011 34.1 6.9 63 393-455 4-68 (273)
348 cd00923 Cyt_c_Oxidase_Va Cytoc 83.4 10 0.00022 27.6 7.2 34 417-450 37-70 (103)
349 PF02284 COX5A: Cytochrome c o 83.0 11 0.00024 27.8 7.3 47 416-462 39-85 (108)
350 cd00923 Cyt_c_Oxidase_Va Cytoc 82.9 12 0.00025 27.4 7.3 60 333-397 24-83 (103)
351 PF06552 TOM20_plant: Plant sp 82.7 7.7 0.00017 32.1 7.2 46 437-482 50-99 (186)
352 COG1747 Uncharacterized N-term 82.3 53 0.0011 32.3 19.4 49 368-416 183-231 (711)
353 PF11207 DUF2989: Protein of u 82.2 5 0.00011 33.9 6.2 70 129-200 121-197 (203)
354 PF09986 DUF2225: Uncharacteri 82.2 12 0.00026 32.5 8.9 64 425-488 121-197 (214)
355 KOG2396 HAT (Half-A-TPR) repea 82.1 53 0.0012 32.1 30.6 240 229-483 299-557 (568)
356 KOG2422 Uncharacterized conser 81.7 17 0.00037 35.9 10.2 54 429-482 349-404 (665)
357 KOG4507 Uncharacterized conser 81.4 5.5 0.00012 39.2 6.9 97 366-465 619-719 (886)
358 COG1747 Uncharacterized N-term 81.1 59 0.0013 32.0 22.0 176 282-468 63-251 (711)
359 PF11207 DUF2989: Protein of u 80.5 15 0.00031 31.2 8.3 45 329-373 153-197 (203)
360 PF04097 Nic96: Nup93/Nic96; 79.9 80 0.0017 32.8 15.5 22 466-487 437-458 (613)
361 PF10579 Rapsyn_N: Rapsyn N-te 79.2 6.6 0.00014 27.3 4.9 47 366-412 18-65 (80)
362 KOG3807 Predicted membrane pro 79.1 33 0.00073 31.4 10.5 21 440-460 380-400 (556)
363 PRK12798 chemotaxis protein; R 78.4 65 0.0014 30.9 21.0 180 298-483 125-322 (421)
364 KOG0276 Vesicle coat complex C 78.2 35 0.00077 34.1 11.1 156 222-420 596-751 (794)
365 smart00386 HAT HAT (Half-A-TPR 77.0 6.7 0.00014 21.3 4.0 30 436-465 1-30 (33)
366 KOG4279 Serine/threonine prote 76.9 52 0.0011 33.9 12.1 46 399-454 353-398 (1226)
367 PRK13800 putative oxidoreducta 76.9 1.2E+02 0.0026 33.2 26.7 246 111-382 632-880 (897)
368 smart00028 TPR Tetratricopepti 76.9 5.2 0.00011 21.1 3.6 29 457-485 2-30 (34)
369 PF14863 Alkyl_sulf_dimr: Alky 76.4 17 0.00036 29.0 7.3 64 406-472 57-120 (141)
370 cd08819 CARD_MDA5_2 Caspase ac 76.3 20 0.00042 25.6 6.7 67 269-337 21-87 (88)
371 PF09477 Type_III_YscG: Bacter 75.5 31 0.00068 25.8 7.7 79 25-108 21-99 (116)
372 KOG1308 Hsp70-interacting prot 75.5 2.1 4.6E-05 39.0 2.3 116 366-485 126-244 (377)
373 PRK10941 hypothetical protein; 74.4 18 0.0004 32.6 7.9 69 393-461 184-254 (269)
374 KOG3364 Membrane protein invol 74.3 35 0.00075 26.9 8.1 72 387-458 29-107 (149)
375 COG4455 ImpE Protein of avirul 74.2 40 0.00087 29.0 9.1 58 320-381 5-62 (273)
376 PF12862 Apc5: Anaphase-promot 73.1 14 0.0003 27.0 5.8 54 432-485 8-70 (94)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 72.4 40 0.00086 26.3 8.5 42 440-481 81-124 (126)
378 KOG4642 Chaperone-dependent E3 71.7 66 0.0014 28.2 10.0 113 326-446 20-141 (284)
379 COG3947 Response regulator con 71.5 80 0.0017 28.6 13.7 69 215-288 282-356 (361)
380 PF11846 DUF3366: Domain of un 71.0 18 0.00039 30.8 6.9 35 419-453 141-175 (193)
381 PF10579 Rapsyn_N: Rapsyn N-te 69.9 14 0.00029 25.8 4.6 45 434-478 18-65 (80)
382 PF12968 DUF3856: Domain of Un 69.5 46 0.00099 25.5 7.5 59 424-482 57-126 (144)
383 PF07163 Pex26: Pex26 protein; 68.9 67 0.0014 28.9 9.7 87 219-308 90-181 (309)
384 cd08819 CARD_MDA5_2 Caspase ac 68.8 21 0.00046 25.5 5.5 33 165-198 51-83 (88)
385 COG5159 RPN6 26S proteasome re 68.6 85 0.0018 28.3 10.2 24 460-483 129-152 (421)
386 KOG2297 Predicted translation 68.3 38 0.00081 30.7 8.1 19 252-270 323-341 (412)
387 PF11846 DUF3366: Domain of un 68.3 24 0.00052 30.0 7.1 56 365-420 119-175 (193)
388 KOG0686 COP9 signalosome, subu 67.7 1.2E+02 0.0025 29.1 13.5 15 368-382 318-332 (466)
389 KOG3364 Membrane protein invol 67.1 46 0.001 26.2 7.4 64 351-416 29-97 (149)
390 KOG0376 Serine-threonine phosp 67.1 4.7 0.0001 38.7 2.7 100 361-463 11-113 (476)
391 KOG1550 Extracellular protein 66.7 1.6E+02 0.0034 30.2 21.8 275 197-486 228-539 (552)
392 KOG2063 Vacuolar assembly/sort 66.2 2E+02 0.0042 31.1 16.8 28 79-107 506-533 (877)
393 PF13762 MNE1: Mitochondrial s 65.9 68 0.0015 25.7 10.4 93 34-129 26-130 (145)
394 PF10345 Cohesin_load: Cohesin 64.9 1.8E+02 0.0039 30.2 37.9 184 296-483 372-604 (608)
395 KOG0545 Aryl-hydrocarbon recep 64.7 89 0.0019 27.6 9.4 50 433-482 241-290 (329)
396 KOG0551 Hsp90 co-chaperone CNS 64.6 53 0.0012 30.3 8.4 90 393-482 84-179 (390)
397 TIGR03504 FimV_Cterm FimV C-te 63.4 18 0.0004 22.0 3.8 19 324-342 7-25 (44)
398 KOG1498 26S proteasome regulat 63.3 1.4E+02 0.003 28.4 14.9 197 318-518 54-274 (439)
399 COG4976 Predicted methyltransf 63.0 13 0.00029 32.0 4.3 52 434-485 7-58 (287)
400 KOG4507 Uncharacterized conser 62.1 45 0.00098 33.3 8.1 135 350-487 567-707 (886)
401 PF07163 Pex26: Pex26 protein; 61.2 1.1E+02 0.0023 27.7 9.5 85 360-445 89-181 (309)
402 KOG3824 Huntingtin interacting 60.3 15 0.00034 33.1 4.4 59 402-460 128-188 (472)
403 PF12862 Apc5: Anaphase-promot 60.1 63 0.0014 23.5 7.1 20 363-382 50-69 (94)
404 KOG2471 TPR repeat-containing 59.5 1.9E+02 0.004 28.6 14.3 123 325-469 249-382 (696)
405 PF09670 Cas_Cas02710: CRISPR- 59.2 1.7E+02 0.0037 28.1 12.1 50 328-381 143-196 (379)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 58.0 55 0.0012 25.5 6.8 43 96-138 81-123 (126)
407 KOG4077 Cytochrome c oxidase, 58.0 74 0.0016 24.7 6.9 40 414-453 76-115 (149)
408 PF14689 SPOB_a: Sensor_kinase 57.9 25 0.00054 23.3 4.1 25 459-483 26-50 (62)
409 PF14853 Fis1_TPR_C: Fis1 C-te 56.2 27 0.00058 22.3 3.9 29 458-486 3-31 (53)
410 PF14689 SPOB_a: Sensor_kinase 56.0 23 0.0005 23.5 3.7 23 393-415 26-48 (62)
411 COG4976 Predicted methyltransf 55.7 24 0.00053 30.5 4.6 54 401-454 6-61 (287)
412 PF10255 Paf67: RNA polymerase 55.6 81 0.0017 30.4 8.6 56 428-483 128-191 (404)
413 TIGR02270 conserved hypothetic 55.6 2.1E+02 0.0045 27.9 23.6 233 84-342 45-278 (410)
414 KOG0292 Vesicle coat complex C 54.7 82 0.0018 33.3 8.8 160 291-488 626-785 (1202)
415 KOG1550 Extracellular protein 54.4 2.6E+02 0.0056 28.7 19.6 243 228-486 228-505 (552)
416 PF07720 TPR_3: Tetratricopept 54.4 40 0.00087 19.4 4.8 18 427-444 6-23 (36)
417 KOG0687 26S proteasome regulat 54.3 1.8E+02 0.004 26.9 13.7 23 392-414 106-128 (393)
418 PRK13342 recombination factor 54.1 2.2E+02 0.0048 27.8 12.7 46 214-262 229-277 (413)
419 KOG4077 Cytochrome c oxidase, 53.9 92 0.002 24.2 6.9 69 336-418 69-137 (149)
420 KOG1464 COP9 signalosome, subu 52.9 1.7E+02 0.0037 26.2 23.4 242 129-381 42-330 (440)
421 KOG0376 Serine-threonine phosp 52.7 30 0.00064 33.6 5.2 104 323-434 11-117 (476)
422 COG5191 Uncharacterized conser 52.7 29 0.00063 31.5 4.8 80 385-464 102-184 (435)
423 PF10366 Vps39_1: Vacuolar sor 52.7 99 0.0021 23.3 7.8 27 214-240 41-67 (108)
424 PF10366 Vps39_1: Vacuolar sor 51.9 74 0.0016 24.0 6.3 25 319-343 42-66 (108)
425 smart00777 Mad3_BUB1_I Mad3/BU 51.8 1.1E+02 0.0025 23.8 8.5 40 441-480 82-123 (125)
426 PF11817 Foie-gras_1: Foie gra 51.5 85 0.0019 28.0 7.9 56 427-482 183-244 (247)
427 KOG2422 Uncharacterized conser 50.9 2.8E+02 0.0061 28.0 13.9 74 397-471 349-431 (665)
428 KOG3824 Huntingtin interacting 50.4 28 0.00061 31.5 4.4 53 365-420 127-181 (472)
429 cd07153 Fur_like Ferric uptake 49.9 58 0.0013 24.8 5.8 46 14-59 4-49 (116)
430 COG2912 Uncharacterized conser 49.9 77 0.0017 28.4 7.0 57 430-486 189-245 (269)
431 PF04910 Tcf25: Transcriptiona 49.6 2.4E+02 0.0052 26.9 17.3 164 298-483 23-220 (360)
432 PF13762 MNE1: Mitochondrial s 49.6 1.4E+02 0.003 24.1 8.4 85 78-163 40-129 (145)
433 COG5187 RPN7 26S proteasome re 49.5 1.6E+02 0.0036 26.7 8.8 106 377-484 102-220 (412)
434 PF00244 14-3-3: 14-3-3 protei 49.1 1.9E+02 0.0041 25.6 9.8 163 218-383 7-198 (236)
435 PF11817 Foie-gras_1: Foie gra 48.9 67 0.0015 28.6 6.8 21 396-416 184-204 (247)
436 cd08326 CARD_CASP9 Caspase act 48.8 59 0.0013 23.2 5.1 31 165-195 45-75 (84)
437 PRK12798 chemotaxis protein; R 48.7 2.6E+02 0.0056 27.0 18.2 85 55-142 90-176 (421)
438 KOG0991 Replication factor C, 48.1 1.9E+02 0.0042 25.4 15.5 80 385-467 189-283 (333)
439 PF09477 Type_III_YscG: Bacter 47.5 1.2E+02 0.0026 22.8 10.0 14 130-143 22-35 (116)
440 TIGR02508 type_III_yscG type I 47.2 1.2E+02 0.0025 22.6 9.0 50 292-343 46-95 (115)
441 PF14561 TPR_20: Tetratricopep 47.2 1.1E+02 0.0023 22.2 7.9 53 421-473 21-75 (90)
442 PF01475 FUR: Ferric uptake re 46.9 64 0.0014 24.8 5.6 48 12-59 9-56 (120)
443 PF10255 Paf67: RNA polymerase 46.0 1.4E+02 0.0031 28.8 8.6 56 184-239 125-191 (404)
444 KOG1308 Hsp70-interacting prot 45.9 23 0.00051 32.6 3.3 118 326-450 124-243 (377)
445 PF04762 IKI3: IKI3 family; I 45.0 4.7E+02 0.01 28.9 16.7 27 288-314 815-843 (928)
446 KOG4814 Uncharacterized conser 44.8 3.4E+02 0.0074 27.9 10.9 85 401-485 365-457 (872)
447 KOG0292 Vesicle coat complex C 44.6 25 0.00055 36.7 3.6 50 399-451 652-701 (1202)
448 PF11663 Toxin_YhaV: Toxin wit 44.1 28 0.00061 27.2 3.0 29 92-123 109-137 (140)
449 KOG0687 26S proteasome regulat 43.7 2.2E+02 0.0047 26.5 8.8 66 422-487 104-175 (393)
450 PF06957 COPI_C: Coatomer (COP 43.5 2.4E+02 0.0052 27.5 9.7 38 417-454 293-332 (422)
451 PF04034 DUF367: Domain of unk 43.4 1.6E+02 0.0034 23.0 7.7 58 390-447 66-124 (127)
452 cd00280 TRFH Telomeric Repeat 43.0 90 0.002 26.1 5.8 18 399-416 120-137 (200)
453 PF11848 DUF3368: Domain of un 43.0 49 0.0011 20.5 3.5 32 125-156 13-44 (48)
454 cd00280 TRFH Telomeric Repeat 42.8 1.5E+02 0.0032 24.9 7.0 23 155-178 117-139 (200)
455 KOG4279 Serine/threonine prote 42.6 4.3E+02 0.0093 27.8 12.8 194 268-486 181-396 (1226)
456 COG4259 Uncharacterized protei 42.2 1.4E+02 0.003 22.1 6.0 35 428-462 78-112 (121)
457 KOG4567 GTPase-activating prot 42.0 2.8E+02 0.0061 25.5 9.6 81 134-216 263-353 (370)
458 PF15015 NYD-SP12_N: Spermatog 41.6 2.9E+02 0.0063 26.7 9.5 22 394-415 232-253 (569)
459 KOG2582 COP9 signalosome, subu 41.0 3.2E+02 0.0069 25.9 13.8 18 160-178 194-211 (422)
460 PHA02875 ankyrin repeat protei 40.8 3.5E+02 0.0076 26.3 15.4 188 31-232 16-219 (413)
461 COG0735 Fur Fe2+/Zn2+ uptake r 40.5 1.5E+02 0.0032 23.8 6.9 61 101-163 9-69 (145)
462 PF04190 DUF410: Protein of un 40.4 2.8E+02 0.006 25.0 15.8 82 389-485 89-170 (260)
463 PRK09857 putative transposase; 40.0 2.7E+02 0.0059 25.6 9.3 65 425-489 209-273 (292)
464 PF11848 DUF3368: Domain of un 39.7 92 0.002 19.3 4.6 33 22-54 14-46 (48)
465 PRK10564 maltose regulon perip 39.2 62 0.0013 29.5 4.9 39 318-359 259-297 (303)
466 KOG0551 Hsp90 co-chaperone CNS 38.7 1.3E+02 0.0027 28.0 6.6 87 325-414 90-177 (390)
467 PF13934 ELYS: Nuclear pore co 38.6 2.7E+02 0.0059 24.4 13.3 19 362-380 116-134 (226)
468 KOG0991 Replication factor C, 38.5 2.8E+02 0.0061 24.5 11.2 80 348-431 188-281 (333)
469 PF12069 DUF3549: Protein of u 38.0 3.5E+02 0.0076 25.5 12.5 87 290-382 171-258 (340)
470 PF11838 ERAP1_C: ERAP1-like C 37.1 3.4E+02 0.0075 25.1 16.2 78 130-208 146-228 (324)
471 PF09670 Cas_Cas02710: CRISPR- 37.0 3.9E+02 0.0085 25.7 11.0 53 362-416 139-195 (379)
472 PF11663 Toxin_YhaV: Toxin wit 36.8 33 0.00071 26.9 2.4 34 19-54 104-137 (140)
473 PRK10564 maltose regulon perip 36.2 65 0.0014 29.4 4.5 31 78-109 258-288 (303)
474 COG0735 Fur Fe2+/Zn2+ uptake r 35.9 1.3E+02 0.0028 24.2 5.8 46 14-59 24-69 (145)
475 PF11768 DUF3312: Protein of u 35.7 4.8E+02 0.01 26.4 12.0 24 216-239 412-435 (545)
476 cd08332 CARD_CASP2 Caspase act 35.5 1E+02 0.0022 22.3 4.7 28 165-192 49-76 (90)
477 COG2256 MGS1 ATPase related to 35.4 4.2E+02 0.0091 25.6 13.9 50 246-295 242-294 (436)
478 PF11864 DUF3384: Domain of un 34.7 4.7E+02 0.01 26.1 10.8 147 12-163 45-227 (464)
479 COG3682 Predicted transcriptio 34.3 1.3E+02 0.0028 23.3 5.2 85 11-108 6-90 (123)
480 PF11768 DUF3312: Protein of u 33.9 5.1E+02 0.011 26.2 12.3 26 289-314 412-437 (545)
481 KOG2659 LisH motif-containing 33.8 3.3E+02 0.0071 23.9 12.7 59 318-381 28-91 (228)
482 PF14669 Asp_Glu_race_2: Putat 33.7 3E+02 0.0065 23.4 13.0 54 427-480 137-205 (233)
483 PF11838 ERAP1_C: ERAP1-like C 33.6 3.9E+02 0.0085 24.7 18.3 111 370-481 146-262 (324)
484 PRK11639 zinc uptake transcrip 33.5 1.2E+02 0.0026 25.1 5.5 34 26-59 41-74 (169)
485 PRK13342 recombination factor 33.4 4.7E+02 0.01 25.6 15.9 33 367-400 243-275 (413)
486 KOG1839 Uncharacterized protei 33.2 3.8E+02 0.0081 30.2 10.1 96 389-484 972-1085(1236)
487 PF10155 DUF2363: Uncharacteri 32.5 2.4E+02 0.0053 22.0 10.5 111 61-177 4-125 (126)
488 PHA02875 ankyrin repeat protei 31.4 4.5E+02 0.0097 25.5 10.1 192 232-446 15-223 (413)
489 PF02184 HAT: HAT (Half-A-TPR) 31.2 1E+02 0.0022 17.3 3.7 26 437-463 2-27 (32)
490 COG0790 FOG: TPR repeat, SEL1 30.8 4.1E+02 0.009 24.2 18.9 115 369-487 128-268 (292)
491 COG5191 Uncharacterized conser 30.7 1.5E+02 0.0033 27.2 5.8 70 418-487 103-173 (435)
492 smart00804 TAP_C C-terminal do 30.5 54 0.0012 21.9 2.4 24 92-115 39-62 (63)
493 COG2256 MGS1 ATPase related to 29.8 5.3E+02 0.011 25.0 14.5 53 351-404 243-298 (436)
494 PF04781 DUF627: Protein of un 29.7 2.5E+02 0.0055 21.3 7.5 40 440-479 62-101 (111)
495 KOG1839 Uncharacterized protei 29.7 8.2E+02 0.018 27.8 11.9 153 325-480 941-1123(1236)
496 PRK02287 hypothetical protein; 29.5 3.3E+02 0.0072 22.6 8.1 59 391-449 108-167 (171)
497 COG5108 RPO41 Mitochondrial DN 29.5 3.6E+02 0.0078 27.9 8.6 49 321-370 33-81 (1117)
498 PRK11639 zinc uptake transcrip 29.5 1.8E+02 0.004 24.1 6.0 35 129-163 40-74 (169)
499 PF12926 MOZART2: Mitotic-spin 28.9 2.2E+02 0.0048 20.4 7.7 41 375-416 29-69 (88)
500 PRK13800 putative oxidoreducta 28.7 8.3E+02 0.018 27.0 28.5 257 169-450 623-880 (897)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-74 Score=606.10 Aligned_cols=507 Identities=36% Similarity=0.672 Sum_probs=467.5
Q ss_pred ccccHHHHHHHHHHccCc---chHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHH
Q 009663 9 NQTLNQQVLAILERCNHI---NHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMIT 85 (529)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 85 (529)
-.|+..++..+++.|+.. ..+.++|..+.+.|+.|++.+++.||.+|++.| +++.|.++|++|+.+|..+||++|.
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcCCCCCcchhHHHHH
Confidence 346677777777777644 556789999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCC
Q 009663 86 AYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGND 165 (529)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 165 (529)
+|++. |++++|+++|++|.+.|+ .||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.| +
T Consensus 262 ~~~~~-g~~~eAl~lf~~M~~~g~-~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~ 338 (857)
T PLN03077 262 GYFEN-GECLEGLELFFTMRELSV-DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG-S 338 (857)
T ss_pred HHHhC-CCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC-C
Confidence 99999 999999999999999998 99999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC--------------------------------------
Q 009663 166 IGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSM-------------------------------------- 207 (529)
Q Consensus 166 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-------------------------------------- 207 (529)
+++|.++|++|..||..+|+.++.+|++.|++++|.++|++|
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 999999999998888888888887777777766666666665
Q ss_pred --------------------------------CCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHH
Q 009663 208 --------------------------------PDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVC 255 (529)
Q Consensus 208 --------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ 255 (529)
.++|..+|+.+|.+|++.|+.++|+++|++|.. ++.||..||+.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~----~~~pd~~t~~~ 494 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL----TLKPNSVTLIA 494 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh----CCCCCHhHHHH
Confidence 334555566666666666666666666666642 57899999999
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHH
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENS 335 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 335 (529)
++.+|++.|.++.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 336 ICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 336 ~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
+++|++|.+ .|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 574 ~~lf~~M~~---~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 574 VELFNRMVE---SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHH---cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999998 99999999999999999999999999999999997779999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccE
Q 009663 416 MKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSW 495 (529)
Q Consensus 416 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 495 (529)
|++.||..+|++|+.+|..+|+.+.+....+++.++.|++...|..+++.|...|+|++|.++.+.|+++|++++|++||
T Consensus 651 m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 651 MPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeEEEEeeCCCCCCChHHHHHHHHHHHh
Q 009663 496 IEVDKQVHQFHSLDKTHPRTEEIYDALESMVA 527 (529)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (529)
+++++..|.|+.+++.||+.++|+..+++|.+
T Consensus 731 ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~ 762 (857)
T PLN03077 731 VEVKGKVHAFLTDDESHPQIKEINTVLEGFYE 762 (857)
T ss_pred EEECCEEEEEecCCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999998887654
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.2e-73 Score=580.64 Aligned_cols=502 Identities=27% Similarity=0.497 Sum_probs=482.1
Q ss_pred cHHHHHHHHHHccCcchHHHHHHHHHHhC-CCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC----CCChhHHHHHHHH
Q 009663 12 LNQQVLAILERCNHINHLKQLQSFLTTLG-QSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT----TPNTYLYTAMITA 86 (529)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~ 86 (529)
.....+..+...++..++.++++.|...+ +.||..+|+.++.+|++.+ +++.|.+++..+. .||..+||.++..
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~-~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALK-SIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 33455556667789999999999998865 7899999999999999999 9999999999886 6899999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCH
Q 009663 87 YASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDI 166 (529)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 166 (529)
|++. |+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.| +.
T Consensus 168 y~k~-g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~-~~ 240 (697)
T PLN03081 168 HVKC-GMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG-SA 240 (697)
T ss_pred HhcC-CCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC-cH
Confidence 9999 99999999999994 68999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhhCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcc
Q 009663 167 GIARKLFDEMSD----RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEV 242 (529)
Q Consensus 167 ~~A~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 242 (529)
+.+.+++..+.+ +|..+|++++.+|++.|++++|.++|++|.++|+.+||.||.+|++.|++++|+++|++|...
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~- 319 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS- 319 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 999999887764 899999999999999999999999999999999999999999999999999999999999877
Q ss_pred cCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHH
Q 009663 243 SDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSM 322 (529)
Q Consensus 243 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 322 (529)
|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.++|+.+|++|
T Consensus 320 --g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~l 397 (697)
T PLN03081 320 --GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397 (697)
T ss_pred --CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR 402 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (529)
|.+|++.|+.++|+++|++|.+ .|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~---~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIA---EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 9999999999999999999998 9999999999999999999999999999999999878999999999999999999
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 403 AGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 403 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.|++++|.+++++|++.|+..+|++++.+|...|+++.|..+++++.++.|++...|..++.+|.+.|++++|.+++++|
T Consensus 475 ~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 475 EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHHHh
Q 009663 483 KDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVA 527 (529)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (529)
.++|+.+.|+++|+++.+..|.|+.+++.||+.++++..+++|..
T Consensus 555 ~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~ 599 (697)
T PLN03081 555 KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMK 599 (697)
T ss_pred HHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887754
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.7e-65 Score=534.02 Aligned_cols=493 Identities=25% Similarity=0.415 Sum_probs=441.3
Q ss_pred cccHHHHHHHHHHc---cCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHH
Q 009663 10 QTLNQQVLAILERC---NHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITA 86 (529)
Q Consensus 10 ~~~~~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 86 (529)
++...++..+++.| +....+.++|..+.+.+..+++.++|.||..|++.| +++.|.++|++|++||..+||.+|.+
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g-~~~~A~~~f~~m~~~d~~~~n~li~~ 161 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGG 161 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC-ChHHHHHHHhcCCCCCeeEHHHHHHH
Confidence 34445555565555 445567788888888888888999999999999999 99999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCH
Q 009663 87 YASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDI 166 (529)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 166 (529)
|++. |++++|+++|++|...|+ .||..||+.++++|+..+++..+.+++..+.+.|+.|+..+++.|+.+|++.| ++
T Consensus 162 ~~~~-g~~~~A~~~f~~M~~~g~-~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~ 238 (857)
T PLN03077 162 YAKA-GYFDEALCLYHRMLWAGV-RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DV 238 (857)
T ss_pred HHhC-CCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CH
Confidence 9999 999999999999999998 99999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHH------------------------------------------------------
Q 009663 167 GIARKLFDEMSDRNVVSWTAMISGYT------------------------------------------------------ 192 (529)
Q Consensus 167 ~~A~~~~~~~~~~~~~~~~~ll~~~~------------------------------------------------------ 192 (529)
+.|.++|++|..+|..+||++|.+|+
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 99999999887766666655555554
Q ss_pred ----------------hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHH
Q 009663 193 ----------------RVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCA 256 (529)
Q Consensus 193 ----------------~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~l 256 (529)
+.|++++|.++|++|..||..+|+.+|.+|++.|++++|+++|++|... ++.||..||+.+
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~---g~~Pd~~t~~~l 395 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD---NVSPDEITIASV 395 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCCCceeHHHH
Confidence 4566666666677777788889999999999999999999999999877 999999999999
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHH
Q 009663 257 LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 336 (529)
+.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 337 CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 337 ~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.+|++|. .++.||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..+++.|+++|++.|++++|.++|+.+
T Consensus 476 ~lf~~m~----~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 476 IFFRQML----LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHH----hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 9999997 569999999999999999999999999999999876 99999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCccCCcc
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEI--DPNNGGYGIMLANIYGELGKWDEVRKVRKMLK-DRNAYKTPGC 493 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~ 493 (529)
.||..+|++++.+|++.|+.++|.++|++|.+. .| |..+|..++.+|.+.|++++|.++|++|. +.|+.|+...
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 789999999999999999999999999999984 46 77888888899999999999999999998 6788776543
Q ss_pred cEEEECCeEEEEeeCCCCCCChHHHHHHHHHH
Q 009663 494 SWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525 (529)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (529)
.. ..+....+-++.+++++++++|
T Consensus 628 y~--------~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 628 YA--------CVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HH--------HHHHHHHhCCCHHHHHHHHHHC
Confidence 32 2334445567888888888887
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-63 Score=513.03 Aligned_cols=501 Identities=17% Similarity=0.224 Sum_probs=445.7
Q ss_pred ccccccHHHHHHHHHHccCcchHHHHHHHHHHhCC-CCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHH
Q 009663 7 QLNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQ-SQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMIT 85 (529)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 85 (529)
..+.+....+...+.++|++.++.++++.|.+.|+ +++..+++.++..|++.| .+++|..+|+.|..|+..+||.+|.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455555555556567999999999999999996 567788889999999998 9999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCC
Q 009663 86 AYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGND 165 (529)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 165 (529)
+|++. |+++.|.++|++|.+.|+ .||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.| +
T Consensus 446 a~~k~-g~~e~A~~lf~~M~~~Gl-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~ 522 (1060)
T PLN03218 446 VCASS-QDIDGALRVLRLVQEAGL-KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-Q 522 (1060)
T ss_pred HHHhC-cCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-C
Confidence 99999 999999999999999998 99999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCC------CCChhhHHHHHHHHHhCCChhHHHHHH
Q 009663 166 IGIARKLFDEMSD----RNVVSWTAMISGYTRVGDIKNAASLFDSMP------DRDVPAWNSVIAGCTQNGLFSDAISFF 235 (529)
Q Consensus 166 ~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~ 235 (529)
+++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999964 899999999999999999999999999984 478999999999999999999999999
Q ss_pred HHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--
Q 009663 236 RRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK-- 313 (529)
Q Consensus 236 ~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 313 (529)
+.|.+. ++.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 603 ~~M~e~---gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 603 QMIHEY---NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHc---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999887 999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred --CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh
Q 009663 314 --KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE 391 (529)
Q Consensus 314 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 391 (529)
++..+|+++|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|... |+.||..
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~---~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~ 755 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKS---IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTI 755 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHH
Confidence 5778999999999999999999999999988 899999999999999999999999999999999866 9999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHH
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM---KIEPDEVVWGSLLNGCKI----Y-------------------GRTDFAEFAV 445 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~ 445 (529)
+|+.++.+|++.|++++|.+++++| ++.||..+|++++..|.+ . +..++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999999 889999999999876432 1 1246799999
Q ss_pred HHHHhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHH
Q 009663 446 KKLIEID--PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALE 523 (529)
Q Consensus 446 ~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (529)
++|.+.+ | +..+|..++.++.+.+..+.+..+++.|...+..++.......++ .+ .++ .+++..+++
T Consensus 836 ~eM~~~Gi~P-d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~----g~----~~~--~~~A~~l~~ 904 (1060)
T PLN03218 836 RETISAGTLP-TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVD----GF----GEY--DPRAFSLLE 904 (1060)
T ss_pred HHHHHCCCCC-CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHH----hh----ccC--hHHHHHHHH
Confidence 9999855 6 667778787888888888988888888877766554443333333 22 111 367999999
Q ss_pred HHHhcC
Q 009663 524 SMVALH 529 (529)
Q Consensus 524 ~~~~~~ 529 (529)
+|.++|
T Consensus 905 em~~~G 910 (1060)
T PLN03218 905 EAASLG 910 (1060)
T ss_pred HHHHcC
Confidence 998876
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-61 Score=497.91 Aligned_cols=462 Identities=16% Similarity=0.253 Sum_probs=425.6
Q ss_pred HHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC----CCChhHHHHHHHHHhc
Q 009663 14 QQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT----TPNTYLYTAMITAYAS 89 (529)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~ 89 (529)
..+...+...+...++..++..|.+ |+..+|+.+|.+|++.| +++.|.++|+.|. .||..+||.+|.+|++
T Consensus 410 ~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k 484 (1060)
T PLN03218 410 AKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 3445556666778888888887764 99999999999999999 9999999999996 5899999999999999
Q ss_pred CCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHH
Q 009663 90 QPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIA 169 (529)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A 169 (529)
. |+.++|.++|++|.+.|+ .||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.| ++++|
T Consensus 485 ~-G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G-~~deA 561 (1060)
T PLN03218 485 S-GKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG-AVDRA 561 (1060)
T ss_pred C-cCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC-CHHHH
Confidence 9 999999999999999998 99999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHhhCC------CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 170 RKLFDEMS------DRNVVSWTAMISGYTRVGDIKNAASLFDSMPD----RDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 170 ~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
.++|++|. .||..+|+++|.+|++.|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999995 38999999999999999999999999999975 567999999999999999999999999999
Q ss_pred hcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC----CCC
Q 009663 240 MEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS----KKR 315 (529)
Q Consensus 240 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 315 (529)
.. |+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .||
T Consensus 642 ~~---Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 642 KK---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred Hc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 87 99999999999999999999999999999999999999999999999999999999999999999984 679
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 009663 316 LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGC 395 (529)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 395 (529)
..+|+.||.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|+++.|.++|++|.+. |+.||..+|+.
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~---~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tyns 794 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKR---LGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRC 794 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 99999999999999999999999999998 999999999999999999999999999999999877 99999999999
Q ss_pred HHHHHHh----c-------------------CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 396 LVDLLGR----A-------------------GRFEEALEVVKGM---KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 396 l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
++..|.+ + +..++|..+|++| |+.||..+|+.++.++...+....+..+++.+.
T Consensus 795 LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 795 ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 9876432 1 2246799999999 899999999999988888888999988888776
Q ss_pred hc-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCc
Q 009663 450 EI-DPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPG 492 (529)
Q Consensus 450 ~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 492 (529)
.. .+.+..+|..++.++.+. .++|..++++|...|+.|+..
T Consensus 875 ~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 875 ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 43 344788999999987432 368999999999999988765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.1e-58 Score=472.83 Aligned_cols=466 Identities=19% Similarity=0.270 Sum_probs=420.0
Q ss_pred ccHHHHHHHHHHc---cCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHH
Q 009663 11 TLNQQVLAILERC---NHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAY 87 (529)
Q Consensus 11 ~~~~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 87 (529)
++..++..++..| ++.+.+.++|..|.+.|+.||+.+|+.|+..|++.| +++.|.++|++|+.||..+||.++.+|
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG-MLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC-CHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 4555566666655 556667999999999999999999999999999999 999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHH
Q 009663 88 ASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIG 167 (529)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 167 (529)
++. |++++|+++|++|.+.|. .||..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+++.|+.+|++.| +++
T Consensus 200 ~~~-g~~~~A~~lf~~M~~~g~-~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~ 276 (697)
T PLN03081 200 VDA-GNYREAFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIE 276 (697)
T ss_pred HHC-cCHHHHHHHHHHHHHhCC-CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC-CHH
Confidence 999 999999999999999998 99999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc
Q 009663 168 IARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMP----DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS 243 (529)
Q Consensus 168 ~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (529)
+|.++|++|..+|..+||+++.+|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++..|.+.
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-- 354 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-- 354 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999999999999994 589999999999999999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC----CCChhHH
Q 009663 244 DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS----KKRLTSW 319 (529)
Q Consensus 244 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~ 319 (529)
|+.||..+++.++.+|++.|++++|.++|+.|. .||..+||.+|.+|++.|+.++|.++|++|. .||..||
T Consensus 355 -g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 355 -GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred -CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 999999999999999999999999999999985 3689999999999999999999999999986 4788899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDL 399 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 399 (529)
+.++.+|++.|+.++|.++|+.|.+ ..|+.|+..+|+.++.++++.|++++|.++++++ ++.|+..+|+.|+.+
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~--~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSE--NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTA 503 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHH--hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHH
Confidence 9999999999999999999999975 2699999999999999999999999999999876 678999999999999
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHH--------HH--H
Q 009663 400 LGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN--NGGYGIML--------AN--I 465 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l--------~~--~ 465 (529)
|...|+++.|..+++++ +..|+ ..+|..++..|++.|++++|.+++++|.+.+-. ....|..+ .. .
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 99999999999999988 66774 679999999999999999999999999986521 11111110 00 0
Q ss_pred H-HhcCCHHHHHHHHHHHhhCCCccCCcc
Q 009663 466 Y-GELGKWDEVRKVRKMLKDRNAYKTPGC 493 (529)
Q Consensus 466 ~-~~~g~~~~a~~~~~~~~~~~~~~~~~~ 493 (529)
+ ....-++...++..+|.+.|..|+...
T Consensus 584 h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 584 HPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 0 001124566778888999998877643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.6e-30 Score=276.59 Aligned_cols=449 Identities=12% Similarity=0.066 Sum_probs=311.9
Q ss_pred HHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccC
Q 009663 51 LVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDV 127 (529)
Q Consensus 51 ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 127 (529)
++..+.+.| ++++|..+++.+. +.+...|+.+...+... |++++|.+.|+++.+.. +.+...+..+...+...
T Consensus 437 l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 437 LILSYLRSG-QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK-GDLAKAREAFEKALSIE--PDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHC
Confidence 334444444 4555555444443 23344555555666555 66666666666665543 34445555555556666
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 009663 128 LESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLF 204 (529)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~ 204 (529)
|++++|.+.++.+.+.+ +.+..++..+...+.+.| +.++|...++++.. .+...+..++..+.+.|++++|..++
T Consensus 513 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTG-NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666554 234556666666666666 66666666666543 23445666666677777777777777
Q ss_pred hhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCC
Q 009663 205 DSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL 281 (529)
Q Consensus 205 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 281 (529)
+.+.+ .+..+|..+..+|...|++++|...|+.+... .+.+...+..+..++...|++++|...++.+.+..+
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL----QPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 66543 34566777777777777777777777777632 123445566666777777777777777777776543
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHH
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFI 358 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~ 358 (529)
.+..++..++..+...|++++|..+++.+.+. +...+..+...+...|++++|...|+++.. ..|+..++.
T Consensus 667 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 740 (899)
T TIGR02917 667 -DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK-----RAPSSQNAI 740 (899)
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----hCCCchHHH
Confidence 24566777777777777777777777766542 344677777888888888888888888864 345556777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYG 436 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g 436 (529)
.+..++...|++++|...++.+.+. .+.+...+..+...|...|++++|.++|+++ .. +++..+++.+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 7888888889999999888888754 2446778888889999999999999999988 33 346788888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChH
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTE 516 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (529)
+ ++|+..++++.+..|+++.++..++.++...|++++|..+++++.+.+.. ++.... .........++.+
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~--------~l~~~~~~~g~~~ 888 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRY--------HLALALLATGRKA 888 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHH--------HHHHHHHHcCCHH
Confidence 9 88999999999999999999999999999999999999999999987764 333222 1233334568889
Q ss_pred HHHHHHHHHHh
Q 009663 517 EIYDALESMVA 527 (529)
Q Consensus 517 ~~~~~~~~~~~ 527 (529)
++...+++|++
T Consensus 889 ~A~~~~~~~~~ 899 (899)
T TIGR02917 889 EARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHhC
Confidence 99999998864
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-29 Score=270.18 Aligned_cols=451 Identities=14% Similarity=0.066 Sum_probs=389.7
Q ss_pred HHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCC
Q 009663 15 QVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQP 91 (529)
Q Consensus 15 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~ 91 (529)
.+...+...++.+.+..+++.+.+. .+.++.++..+...+...| ++++|.+.|+++. +.+...+..+...+...
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~- 512 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQE- 512 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-
Confidence 3444455567777777777777654 4567888999999999999 9999999999875 44566777888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARK 171 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~ 171 (529)
|++++|...|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+.+.| ++++|.+
T Consensus 513 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~ 588 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG-QLKKALA 588 (899)
T ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC-CHHHHHH
Confidence 99999999999999876 6778899999999999999999999999998876 446778888999999999 9999999
Q ss_pred HHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCC
Q 009663 172 LFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDN 245 (529)
Q Consensus 172 ~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 245 (529)
+++.+.. .+...|..+..++.+.|++++|...|+++.+ .+...+..+...+.+.|++++|...|+++...
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 664 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL---- 664 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 9999875 4677899999999999999999999998753 36678889999999999999999999998743
Q ss_pred CCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHH
Q 009663 246 IRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRLTSWNSMI 323 (529)
Q Consensus 246 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 323 (529)
.+.+..++..+...+...|++++|..+++.+.+.++ .+...+..+...+...|++++|...|+++.. ++..++..++
T Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 743 (899)
T TIGR02917 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHH
Confidence 234577888999999999999999999999998864 4677888899999999999999999998754 4446778889
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRA 403 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 403 (529)
.++.+.|++++|.+.++++.+ ..+.+...+..+...|...|++++|..+|+++.+. .++++..+..+...+...
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLK----THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 999999999999999999975 34456778888999999999999999999999864 244688899999999999
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 404 GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 404 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
|+ ++|+.+++++ ...| +..++..+...+...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99 8899999988 4445 5677888889999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 009663 482 LKD 484 (529)
Q Consensus 482 ~~~ 484 (529)
|.+
T Consensus 897 ~~~ 899 (899)
T TIGR02917 897 LLN 899 (899)
T ss_pred HhC
Confidence 863
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-23 Score=193.35 Aligned_cols=430 Identities=13% Similarity=0.146 Sum_probs=226.7
Q ss_pred HHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCC-------------------
Q 009663 14 QQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTT------------------- 74 (529)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~------------------- 74 (529)
..+...+...-+......+.++..+.....+ ....|....-+.| ++++|++.-.-+-.
T Consensus 19 ~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~~--~~l~lah~~yq~g-d~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~ 95 (966)
T KOG4626|consen 19 EAFSRKLDQSVSSSGSSSVLQQFNKTHEGSD--DRLELAHRLYQGG-DYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG 95 (966)
T ss_pred HHHHHHhccCcccccchHHHHHhccCCccch--hHHHHHHHHHhcc-CHHHHHHHHhHhhccCCCcccceeeehhhhhcc
Confidence 4444444444444444455555544422211 2334555555566 88888875433211
Q ss_pred ------------------CChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHH
Q 009663 75 ------------------PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMV 136 (529)
Q Consensus 75 ------------------~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (529)
....+|..+...+-.. |+++.|+.+|+.+++.. +.....|..+..++...|+.+.|.+.
T Consensus 96 ~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker-g~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 96 SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER-GQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh-chHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHH
Confidence 1123444455555444 56666666666665553 34455555555555566666666665
Q ss_pred HHHHHHhCCCCchhH-HHHHHHHHHhcCCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-
Q 009663 137 HTQIVKSGFEQYPVV-ETALVNSYSRSGNDIGIARKLFDEMSD--RN-VVSWTAMISGYTRVGDIKNAASLFDSMPDRD- 211 (529)
Q Consensus 137 ~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~- 211 (529)
|.+.++.+ |+... .+.+...+-..| ++.+|...|.+..+ |. ...|..|...+..+|++..|+..|++...-|
T Consensus 173 ~~~alqln--P~l~ca~s~lgnLlka~G-rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP 249 (966)
T KOG4626|consen 173 FFEALQLN--PDLYCARSDLGNLLKAEG-RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP 249 (966)
T ss_pred HHHHHhcC--cchhhhhcchhHHHHhhc-ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC
Confidence 55555532 33222 222333333445 55555555555443 22 2345555555555666666666665554322
Q ss_pred --hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCH-HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHH
Q 009663 212 --VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ-VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFIS 288 (529)
Q Consensus 212 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 288 (529)
...|-.|...|...+.+++|+..|.+.. ...|+. ..+..+...|...|.++.|+..|++.++..+. -...|
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl-----~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay 323 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRAL-----NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAY 323 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHH-----hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHH
Confidence 2355555556666666666666555554 334432 34444545555556666666666655554332 23455
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHH
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD-GVTFISLLNAC 364 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~ 364 (529)
+.|..++-..|++.+|.+.|++... ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~-----v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE-----VFPEFAAAHNNLASIY 398 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh-----hChhhhhhhhhHHHHH
Confidence 5566666666666666666655432 1233555556666666666666666655532 3332 23455555555
Q ss_pred hCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 009663 365 THGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFA 441 (529)
Q Consensus 365 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 441 (529)
-++|++++|+..|++.. .+.|+ ...|+.+...|...|+.+.|.+.+.+. .++|. ....+.|...|...|+..+|
T Consensus 399 kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHH
Confidence 56666666666666555 44554 445555666666666666666665554 44553 34555555556666666666
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 442 EFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 442 ~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
++.|+.++++.|+-+.++..++.++
T Consensus 476 I~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 476 IQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHccCCCCchhhhHHHHHH
Confidence 6666666666666566655555544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.6e-21 Score=211.07 Aligned_cols=153 Identities=15% Similarity=0.168 Sum_probs=101.9
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHH----
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCL---- 396 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l---- 396 (529)
...+...|++++|++.|++..+ ..| +...+..+...+...|++++|...++++.+. .| ++..+..+
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~-----~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l 539 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLA-----LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ---KPNDPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 3445566777777777777754 234 3345556666777777777777777776642 23 22222222
Q ss_pred ----------------------------------------HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 009663 397 ----------------------------------------VDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYG 436 (529)
Q Consensus 397 ----------------------------------------~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 436 (529)
...+...|+.++|.++++.- +++...+..+...+.+.|
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcC
Confidence 23344455555555555522 234455666777788888
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
++++|+..|+++++..|+++..+..++.+|...|++++|+..++++.+.
T Consensus 618 ~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 618 DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888888888888888888877654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2.7e-21 Score=209.35 Aligned_cols=451 Identities=13% Similarity=0.073 Sum_probs=289.3
Q ss_pred HHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHh-hcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCC
Q 009663 17 LAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCT-LKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPA 92 (529)
Q Consensus 17 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~ 92 (529)
..++...++.++|.+.++.+.+.. +|+............ ..| +.++|.+.++.+. +.+...+..+...+... |
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g-~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~-g 195 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPA-QRPEAINQLQRLNADYPGNTGLRNTLALLLFSS-G 195 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc-C
Confidence 345667788899998888887553 334332222333333 345 8999999998886 33455677777777777 9
Q ss_pred ChHHHHHHHHHHHHCCCC---------------C----------------CCcchH---------------------HHH
Q 009663 93 HASSAFSLYRDMVRRGQP---------------Q----------------PNQFIY---------------------PHV 120 (529)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~---------------~----------------~~~~~~---------------------~~l 120 (529)
++++|+..|+++...... . |+...+ ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 999999999887653200 0 110000 011
Q ss_pred HHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--CCh---hhHH----------
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--RNV---VSWT---------- 185 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~~---~~~~---------- 185 (529)
...+...|++++|...+++.++.. +.+...+..+..++.+.| ++++|...|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g-~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQG-DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 233556789999999999998875 336788888899999999 99999999988875 322 1121
Q ss_pred --HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC-HHHHHHHH--
Q 009663 186 --AMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN-QVTLVCAL-- 257 (529)
Q Consensus 186 --~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~-~~~~~~ll-- 257 (529)
.....+.+.|++++|+..|++... .+...+..+...+...|++++|++.|++..+. .|+ ...+..+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----~p~~~~a~~~L~~l 428 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-----DPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence 123456788999999999988754 35567778888999999999999999988743 343 22222222
Q ss_pred ----------------------------------------HHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh
Q 009663 258 ----------------------------------------SAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGK 297 (529)
Q Consensus 258 ----------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (529)
..+...|++++|...++++++..+. +..++..+...|.+
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 2233456666777777666665432 34455566666777
Q ss_pred CCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH---------HHHHHHHHHh
Q 009663 298 CGSLKEARRAFDRNSK--K-RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV---------TFISLLNACT 365 (529)
Q Consensus 298 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~---------~~~~l~~~~~ 365 (529)
.|++++|...|+++.+ | +...+..+...+...++.++|+..++.+.. ....++.. .+..+...+.
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~---~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPR---AQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCc---hhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 7777777777666532 2 333444444445556666666666665432 11111111 1112334455
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
..|+.++|..+++. .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|++
T Consensus 585 ~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56666666665551 1234555666777777777777777777776 4444 46667777777777777777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 444 AVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 444 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.++++.+..|+++.....++.++...|++++|.++++++.....
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 77777777777777777777777777777777777777766543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=6.1e-22 Score=182.80 Aligned_cols=428 Identities=13% Similarity=0.133 Sum_probs=323.8
Q ss_pred CCchhHHHHHHHHHhhcC----CChhHHHHHhhcCC---------CCChhHHH-----HHHH-HHhcCCCChHHHHHHHH
Q 009663 42 SQTNFYAFKLVRFCTLKL----SNLTYARFIFDHLT---------TPNTYLYT-----AMIT-AYASQPAHASSAFSLYR 102 (529)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~----~~~~~A~~~~~~~~---------~~~~~~~~-----~ll~-~~~~~~~~~~~a~~~~~ 102 (529)
.++....+.+++-+.+.. +.++.|-++|+... ---..-=+ .+++ .+.+. .+.+....--.
T Consensus 28 ~~~s~~s~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~-~r~d~s~a~~~ 106 (966)
T KOG4626|consen 28 SVSSSGSSSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG-SRLDKSSAGSL 106 (966)
T ss_pred CcccccchHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc-cchhhhhhhhh
Confidence 455555666776665544 24566666665543 24696321 2333 33333 56666555554
Q ss_pred HHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--CC
Q 009663 103 DMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--RN 180 (529)
Q Consensus 103 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~ 180 (529)
...+.. +--.++|..+.+.+...|+++.|+.++..+++.. +..+..|..+..++...| +.+.|...|.+..+ |+
T Consensus 107 ~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~-~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 107 LAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQG-DLELAVQCFFEALQLNPD 182 (966)
T ss_pred hhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCcc
Confidence 444443 5567888889999999999999999999888865 236678888888999988 89999998888877 43
Q ss_pred hhhHH-HHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCH-HHHHH
Q 009663 181 VVSWT-AMISGYTRVGDIKNAASLFDSMPD--RD-VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ-VTLVC 255 (529)
Q Consensus 181 ~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~-~~~~~ 255 (529)
..... .+...+-..|++++|...+.+..+ |. .+.|..|...+-.+|+...|+..|++.. .++|+. ..|..
T Consensus 183 l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-----kldP~f~dAYiN 257 (966)
T KOG4626|consen 183 LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-----KLDPNFLDAYIN 257 (966)
T ss_pred hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh-----cCCCcchHHHhh
Confidence 33322 233444557888888888877554 32 3578888888888999999999998887 567763 46888
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHHcCCh
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK--R-LTSWNSMINSFALHGQS 332 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~ 332 (529)
|-..|...+.++.|...|.++....+ -...++..+...|...|.++.|+..|++..+. + ...|+.|..++-..|++
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccch
Confidence 88888888999999998888877653 24567777888888899999999999886543 3 34899999999999999
Q ss_pred hHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH
Q 009663 333 ENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEAL 410 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 410 (529)
.+|.+.|.+... +.|+ ....+.|...+...|.++.|..+|.... .+.|. ...++.|...|-+.|++++|+
T Consensus 337 ~ea~~cYnkaL~-----l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 337 TEAVDCYNKALR-----LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHHHHHHHHHHH-----hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 999999988864 3343 4567788888888999999999998887 45665 667888888999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 411 EVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 411 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
.-+++. .+.|+ ...++.+...|...|+.+.|++.+.+++.++|.-..++..|+.+|..+|+..+|+.-++...+....
T Consensus 409 ~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 409 MCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999887 77886 5678888888999999999999999999999988888899999999999999999998888766554
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=5e-19 Score=183.43 Aligned_cols=214 Identities=11% Similarity=0.026 Sum_probs=168.7
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHH
Q 009663 264 GMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRLTSWNSMINSFALHGQSENSICVFEE 341 (529)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (529)
++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|..++++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666777666666554 3433333345555688999999999987653 3344566777888899999999999999
Q ss_pred HhhcccCCCCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 009663 342 MMRCQDHNIRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIE 419 (529)
Q Consensus 342 m~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 419 (529)
..+ .. |+. ..+..+.......|++++|...+++..+ +.|+...+..+..++.+.|++++|...+++. ...
T Consensus 568 AL~---l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 568 AEQ---RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHh---cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 875 32 433 3333444455567999999999999984 4678889999999999999999999999988 556
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 420 P-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 420 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
| +...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+...
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6 5677888888999999999999999999999999999999999999999999999999999986653
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.5e-19 Score=183.92 Aligned_cols=251 Identities=16% Similarity=0.087 Sum_probs=202.7
Q ss_pred CCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHH
Q 009663 225 NGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE 303 (529)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 303 (529)
.+++++|++.|+..... ....| ....+..+...+...|++++|+..+++.++..+. ....|..+..++...|++++
T Consensus 307 ~~~y~~A~~~~~~al~~--~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 307 DESYEEAARAFEKALDL--GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred hhhHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHH
Confidence 47899999999998743 11234 3456777777888999999999999999887542 45577888899999999999
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 304 ARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 304 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
|...|++..+ .+...|..+...+...|++++|+..|++..+ ..| +...+..+...+.+.|++++|...|++
T Consensus 384 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-----l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID-----LDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999987643 3566899999999999999999999999965 344 456677788889999999999999999
Q ss_pred hHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 380 MTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE-V-------VWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 380 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
..+. .| +...+..+...+...|++++|.+.|++. .+.|+. . .++..+..+...|++++|.+++++++
T Consensus 459 al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 459 CKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9853 45 5788999999999999999999999986 444431 1 11222223344699999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 450 EIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 450 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+++|++...+..++.++.+.|++++|+..+++..+..
T Consensus 536 ~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987653
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.3e-20 Score=182.31 Aligned_cols=290 Identities=13% Similarity=0.079 Sum_probs=191.0
Q ss_pred HhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC---HHHHHHHHHHhhccCC
Q 009663 192 TRVGDIKNAASLFDSMPDR---DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN---QVTLVCALSAIGHTGM 265 (529)
Q Consensus 192 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~---~~~~~~ll~~~~~~~~ 265 (529)
...|++++|...|+++.+. +..++..+...+...|++++|..+++.+... ...++ ...+..+...+...|+
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR---PDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3444445555555444321 2234455555555555555555555555422 11111 1234444555555555
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCC--------hhHHHHHHHHHHHcCChhHHHH
Q 009663 266 LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKR--------LTSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~ 337 (529)
++.|..+|+.+.+... .+..++..++.++.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5555555555554322 234455555666666666666666665543221 1134556677788889999999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 338 VFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ--IEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 338 ~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
.|+++.+ .. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|...|++++|.+.+++
T Consensus 202 ~~~~al~---~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 202 LLKKALA---AD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHh---HC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9988864 22 223556777888888999999999999998854 343 45678889999999999999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCccCC
Q 009663 416 M-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE---LGKWDEVRKVRKMLKDRNAYKTP 491 (529)
Q Consensus 416 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 491 (529)
+ ...|+...+..++..+.+.|++++|..+++++.+..|++.... .+...+.. .|+.++++.+++++.++++.++|
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 8 5577777778888899999999999999999999999665444 34444432 56899999999999999998888
Q ss_pred cc
Q 009663 492 GC 493 (529)
Q Consensus 492 ~~ 493 (529)
.+
T Consensus 354 ~~ 355 (389)
T PRK11788 354 RY 355 (389)
T ss_pred CE
Confidence 73
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=4.1e-18 Score=176.60 Aligned_cols=399 Identities=11% Similarity=0.029 Sum_probs=212.0
Q ss_pred chhHHHHHHHHHhhcCCChhHHHHHhhcCCC---CChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHH
Q 009663 44 TNFYAFKLVRFCTLKLSNLTYARFIFDHLTT---PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHV 120 (529)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 120 (529)
++....-.+......| +.++|.+++....+ .+...+..+...+... |++++|..+|++..+.. +.+...+..+
T Consensus 14 ~~~~~~d~~~ia~~~g-~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~-g~~~~A~~~~~~al~~~--P~~~~a~~~l 89 (765)
T PRK10049 14 SNNQIADWLQIALWAG-QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL-KQWQNSLTLWQKALSLE--PQNDDYQRGL 89 (765)
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 3444444555555555 66666666655442 2223355555555555 66666666666655543 3344445555
Q ss_pred HHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCH
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRVGDI 197 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~ 197 (529)
...+...|++++|...++++.+.. +.+.. +..+..++...| +.++|...++++.. | +...+..+...+...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g-~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAG-RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 555556666666666666665543 22333 555555555666 56666666655554 2 223334444455555555
Q ss_pred HHHHHHHhhCCCCChh--------hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCc---
Q 009663 198 KNAASLFDSMPDRDVP--------AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGML--- 266 (529)
Q Consensus 198 ~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~--- 266 (529)
+.|++.++.... ++. ....++......+ ....+++
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~---------------------------------~~~~~r~~~a 212 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPT---------------------------------RSEKERYAIA 212 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccc---------------------------------cChhHHHHHH
Confidence 555555554443 111 0011111111000 0111122
Q ss_pred hHHHHHHHHHHHh-CCCCCcc-HHH----HHHHHHHhCCCHHHHHHHHhhcCCCC--hh--HHHHHHHHHHHcCChhHHH
Q 009663 267 QLGKVIHGYVYRN-GLDLDSF-ISN----ALIDMYGKCGSLKEARRAFDRNSKKR--LT--SWNSMINSFALHGQSENSI 336 (529)
Q Consensus 267 ~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~~~~~~a~ 336 (529)
+.|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+++.+.+ .. ....+...|...|++++|+
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 4455555555543 1112211 110 00223345566667776666665432 11 1122355666677777777
Q ss_pred HHHHHHhhcccCCC-C--CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHH
Q 009663 337 CVFEEMMRCQDHNI-R--PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYR----------IEPQ---IEHYGCLVDLL 400 (529)
Q Consensus 337 ~~~~~m~~~~~~~~-~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~ 400 (529)
..|+++.. ... . +.......+..++...|++++|..+++.+..... -.|+ ...+..+...+
T Consensus 293 ~~l~~~l~---~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 293 SILTELFY---HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHhh---cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 77776643 211 0 0123344455556667777777777776664210 0112 12345566667
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 009663 401 GRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
...|++++|+++++++ ...| +...+..+...+...|++++|++.++++++..|++..++...+..+...|++++|..+
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 7777777777777776 3334 4566667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhCC
Q 009663 479 RKMLKDRN 486 (529)
Q Consensus 479 ~~~~~~~~ 486 (529)
++++.+..
T Consensus 450 ~~~ll~~~ 457 (765)
T PRK10049 450 TDDVVARE 457 (765)
T ss_pred HHHHHHhC
Confidence 77776553
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=8.9e-18 Score=174.25 Aligned_cols=257 Identities=11% Similarity=0.021 Sum_probs=204.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 009663 216 NSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY 295 (529)
Q Consensus 216 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (529)
..+..++.. ++.++|+..+.+... ..|+......+..++...|++++|...++++... +|+...+..+..++
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~-----~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQ-----RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHH-----hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 334444443 566667776666653 3466554444455567899999999999987655 33445566778889
Q ss_pred HhCCCHHHHHHHHhhcCCCChhH---HHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHH
Q 009663 296 GKCGSLKEARRAFDRNSKKRLTS---WNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQ 372 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 372 (529)
.+.|+.++|...|++..+.++.. +..+.......|++++|...+++..+ ..|+...+..+..++.+.|++++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-----l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN-----IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999998876554332 22333344456999999999999965 55778889999999999999999
Q ss_pred HHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 373 GRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 373 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
|...+++... ..| +...+..+..++...|++++|+..+++. ...| +...+..+..++...|++++|+..++++.
T Consensus 628 A~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999984 366 5778888999999999999999999988 5566 67889999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 450 EIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 450 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
+..|++..+....++...+..+++.|.+-+++....++.
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999888766664
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=5.6e-19 Score=179.11 Aligned_cols=341 Identities=11% Similarity=-0.015 Sum_probs=195.9
Q ss_pred HHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhc
Q 009663 118 PHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRV 194 (529)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~ 194 (529)
..++..+.+.|+++.|..+++......+. +...+..++.+....| +++.|.+.|+++.. | +...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g-~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASS-QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 33444444445555555555444444322 2223333333444444 45555555555443 2 233444444455555
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHH
Q 009663 195 GDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKV 271 (529)
Q Consensus 195 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 271 (529)
|++++|...+++... .+...+..+...+...|++++|...++.+... .|+.......+..+...|++++|..
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-----~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-----VPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555432 23445555566666666666666666655422 2222211111223555666666666
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhH----HHHHHHHHhh
Q 009663 272 IHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSEN----SICVFEEMMR 344 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~ 344 (529)
.++.+.+....++......+..++...|++++|+..|++... .+...+..+...+...|++++ |+..|+++.+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 666665554333333444445566667777777777665443 234466667777777777764 6778887754
Q ss_pred cccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 009663 345 CQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD 421 (529)
Q Consensus 345 ~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 421 (529)
..| +...+..+...+...|++++|...++++.+. .| +...+..+..+|.+.|++++|...++++ ...|+
T Consensus 279 -----l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 279 -----FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred -----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 334 4456777777888888888888888887743 45 4566677778888888888888888877 44565
Q ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 422 EVV-WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 422 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
... +..+..++...|++++|+..|+++.+..|++. ...+++|...+.+..+.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 433 33345667788888888888888888887653 23344555555555444
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.2e-19 Score=175.54 Aligned_cols=285 Identities=12% Similarity=0.095 Sum_probs=148.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCCHHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQY---PVVETALVNSYSRSGNDIGI 168 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~~ 168 (529)
|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.| +++.
T Consensus 49 ~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g-~~~~ 125 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG-LLDR 125 (389)
T ss_pred CChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC-CHHH
Confidence 66677777777776654 44555666666666666777777766666665432111 134555666666666 6666
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--------hhhHHHHHHHHHhCCChhHHHHHHHH
Q 009663 169 ARKLFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRD--------VPAWNSVIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 169 A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~ 237 (529)
|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|...|++
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6666666654 234455555555555555555555555543211 11233444555555666666666665
Q ss_pred hhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--C
Q 009663 238 MGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--K 314 (529)
Q Consensus 238 m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 314 (529)
+... .| +...+..+...+.+.|++++|..+++++.+.++.....+++.++.+|...|++++|...++++.+ |
T Consensus 206 al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 206 ALAA-----DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHhH-----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5422 22 23344444455555555555555555555443322233444555555555555555555554332 2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC---CCcHHHHHHHHHHhHHhcCCCCCh
Q 009663 315 RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH---GGLVEQGRAYFKLMTKTYRIEPQI 390 (529)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~ 390 (529)
+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.+++..+++++.++ ++.|++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-----~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLR-----RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence 333334455555555555555555555532 23555555544444332 23455555555555543 444443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1e-17 Score=173.65 Aligned_cols=422 Identities=9% Similarity=-0.025 Sum_probs=289.7
Q ss_pred cccccccHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHH
Q 009663 6 NQLNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTA 82 (529)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 82 (529)
.+.++.-....+.+....++...+.+++....... +.+...+..+...+...| ++++|..+|+... +.+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45566667777888888899999999988887632 344556888888898998 9999999999953 455667778
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009663 83 MITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRS 162 (529)
Q Consensus 83 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (529)
+...+... |++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+..+. +...+..+..++...
T Consensus 89 la~~l~~~-g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~ 163 (765)
T PRK10049 89 LILTLADA-GQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 88888888 99999999999999885 55666 888888899999999999999999997643 566667788888888
Q ss_pred CCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh---hHHHHHHHHhh
Q 009663 163 GNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLF---SDAISFFRRMG 239 (529)
Q Consensus 163 g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~ 239 (529)
| ..+.|.+.++.... ++.....+ ....+...++.. +.......+++ ++|++.++.+.
T Consensus 164 ~-~~e~Al~~l~~~~~-~p~~~~~l--------~~~~~~~~~r~~----------~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 164 R-LSAPALGAIDDANL-TPAEKRDL--------EADAAAELVRLS----------FMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred C-ChHHHHHHHHhCCC-CHHHHHHH--------HHHHHHHHHHhh----------cccccChhHHHHHHHHHHHHHHHHH
Confidence 8 99999999998876 22210000 000111111100 00111122222 55566665554
Q ss_pred hcccCCCCCCH-HHH----HHHHHHhhccCCchHHHHHHHHHHHhCCC-CCccHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 009663 240 MEVSDNIRPNQ-VTL----VCALSAIGHTGMLQLGKVIHGYVYRNGLD-LDSFISNALIDMYGKCGSLKEARRAFDRNSK 313 (529)
Q Consensus 240 ~~~~~~~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 313 (529)
... ...|+. ..+ ...+.++...|+.++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+
T Consensus 224 ~~~--~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 224 ALW--HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred hhc--ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 210 111211 111 11133444556777777777777666532 221 222245667777777777777776543
Q ss_pred CC-------hhHHHHHHHHHHHcCChhHHHHHHHHHhhccc--------CCCCCCH---HHHHHHHHHHhCCCcHHHHHH
Q 009663 314 KR-------LTSWNSMINSFALHGQSENSICVFEEMMRCQD--------HNIRPDG---VTFISLLNACTHGGLVEQGRA 375 (529)
Q Consensus 314 ~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------~~~~p~~---~~~~~l~~~~~~~~~~~~a~~ 375 (529)
.+ ...+..+..++...|++++|..+++.+....+ ....|+. ..+..+...+...|+.++|+.
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 22 12344555567777888888888887764100 0112342 234566677888999999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 376 YFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 376 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
.++++... .| +...+..+...+...|++++|++.+++. ...|+ ...+...+..+...|++++|+.+++++++..
T Consensus 381 ~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999854 45 6788899999999999999999999998 66775 6667777778899999999999999999999
Q ss_pred CCCchhHH
Q 009663 453 PNNGGYGI 460 (529)
Q Consensus 453 p~~~~~~~ 460 (529)
|+++.+..
T Consensus 458 Pd~~~~~~ 465 (765)
T PRK10049 458 PQDPGVQR 465 (765)
T ss_pred CCCHHHHH
Confidence 98875543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=3.3e-18 Score=173.54 Aligned_cols=321 Identities=10% Similarity=-0.009 Sum_probs=263.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 009663 153 TALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNG 226 (529)
Q Consensus 153 ~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 226 (529)
..++..+.+.| +++.|..+++.... | +...+..++.+....|++++|...|+++.. .+...+..+...+.+.|
T Consensus 46 ~~~~~~~~~~g-~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKD-ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcC-CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 34566788889 99999999998875 3 455677777888889999999999999864 35667888899999999
Q ss_pred ChhHHHHHHHHhhhcccCCCCCC-HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHH
Q 009663 227 LFSDAISFFRRMGMEVSDNIRPN-QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEAR 305 (529)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 305 (529)
++++|+..+++.. ...|+ ...+..+..++...|++++|...++.+....+.+.. .+..+ ..+...|++++|.
T Consensus 125 ~~~~Ai~~l~~Al-----~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 125 QYATVADLAEQAW-----LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred CHHHHHHHHHHHH-----HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHH
Confidence 9999999999998 44554 556778888999999999999999988877654333 33333 3478899999999
Q ss_pred HHHhhcCCCC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHH----HHHHH
Q 009663 306 RAFDRNSKKR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQ----GRAYF 377 (529)
Q Consensus 306 ~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~ 377 (529)
..++.+.+.+ ...+..+..++...|++++|+..++++.. .. +.+...+..+...+...|++++ |...|
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA---RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 9999865532 23455567788999999999999999975 32 3355677788889999999985 89999
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 378 KLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 378 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
+++.+ +.| +...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|+..++++.+.+|+
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99884 356 5778999999999999999999999988 5556 4667778888999999999999999999999998
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 455 NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
+...+..++.++...|++++|+..+++..+....
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 8777777788999999999999999999877654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=8.4e-17 Score=163.71 Aligned_cols=427 Identities=9% Similarity=-0.005 Sum_probs=248.0
Q ss_pred HHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHH---HHHhcCCCChHHH
Q 009663 21 ERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMI---TAYASQPAHASSA 97 (529)
Q Consensus 21 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~~a 97 (529)
.+.|+...|...+++..+......+.++ .++..+...| +.++|...+++...|+...+..++ ..+... |++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G-~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAG-RDQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcC-CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHH
Confidence 3456666666666666555322223344 6667777776 777777777777655443333333 344445 777777
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009663 98 FSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMS 177 (529)
Q Consensus 98 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~ 177 (529)
+++|+++.+.. +.+...+..++..+...++.++|++.++.+... .|+...+..++..+...+ +..+|++.++++.
T Consensus 122 iely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~-~~~~AL~~~ekll 196 (822)
T PRK14574 122 LALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD-RNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc-hHHHHHHHHHHHH
Confidence 77777777765 445566666666677777777777777777664 334444444444444445 5555777777776
Q ss_pred C--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-Chhh--------HHHHHHHH-----HhCCC---hhHHHHHHHH
Q 009663 178 D--R-NVVSWTAMISGYTRVGDIKNAASLFDSMPDR-DVPA--------WNSVIAGC-----TQNGL---FSDAISFFRR 237 (529)
Q Consensus 178 ~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~li~~~-----~~~g~---~~~A~~~~~~ 237 (529)
+ | +...+..+..++.+.|-...|.++..+-++- +... ...+++.- ....+ .+.|+.-++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 5 3 4556666777777777777777777665421 0000 00111000 01112 2334444444
Q ss_pred hhhcccCCCCCCHHH----HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 009663 238 MGMEVSDNIRPNQVT----LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK 313 (529)
Q Consensus 238 m~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 313 (529)
+.... +..++.... ..-.+.++...++..++++.|+.+...+.+....+-..+.++|...+++++|+.+|..+..
T Consensus 277 l~~~~-~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 277 LLTRW-GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHhhc-cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 44210 011222111 1123445667777777777777777776655555666777777777777777777776533
Q ss_pred CC---------hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC----------CCCCCHHH-HHHHHHHHhCCCcHHHH
Q 009663 314 KR---------LTSWNSMINSFALHGQSENSICVFEEMMRCQDH----------NIRPDGVT-FISLLNACTHGGLVEQG 373 (529)
Q Consensus 314 ~~---------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------~~~p~~~~-~~~l~~~~~~~~~~~~a 373 (529)
.+ ......|.-+|...+++++|..+++++.+..+. ...||-.. +..++..+...|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 21 122455666777777777777777777641110 01122222 23344556667777777
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 374 RAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
++.++++... .| |......+...+...|.+.+|+++++.. .+.|+ ..+....+.++...+++.+|..+.+.+.+
T Consensus 436 e~~le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 436 QKKLEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 7777777633 44 6667777777777777777777777665 44553 44555566666667777777777777777
Q ss_pred cCCCCchhH
Q 009663 451 IDPNNGGYG 459 (529)
Q Consensus 451 ~~p~~~~~~ 459 (529)
..|+++.+-
T Consensus 513 ~~Pe~~~~~ 521 (822)
T PRK14574 513 RSPEDIPSQ 521 (822)
T ss_pred hCCCchhHH
Confidence 777666443
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=6.9e-17 Score=164.56 Aligned_cols=390 Identities=10% Similarity=0.008 Sum_probs=278.8
Q ss_pred HHHHHHHHhhcCCChhHHHHHhhcCC--CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCc
Q 009663 48 AFKLVRFCTLKLSNLTYARFIFDHLT--TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCP 125 (529)
Q Consensus 48 ~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~ 125 (529)
+...-..+.+.| +++.|...|+... .|+...|..+..++... |++++|++.++..++.+ +.+...|..+..++.
T Consensus 130 ~k~~G~~~~~~~-~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNK-DFNKAIKLYSKAIECKPDPVYYSNRAACHNAL-GDWEKVVEDTTAALELD--PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 334455667777 8888888888765 46667777777788877 88888888888888775 556677888888888
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---------------------------
Q 009663 126 DVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--------------------------- 178 (529)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--------------------------- 178 (529)
..|++++|...+..+...+...+.. ...++..+.... ....+...++.-..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKF-AESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 8888888887776655443211111 111111111111 11222222211111
Q ss_pred --CCh---hhHHHHHHH---HHhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccC
Q 009663 179 --RNV---VSWTAMISG---YTRVGDIKNAASLFDSMPDR------DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD 244 (529)
Q Consensus 179 --~~~---~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 244 (529)
.+. ..+..+... ....+++++|.+.|++..+. ....|+.+...+...|++++|+..|++..
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal----- 358 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI----- 358 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Confidence 000 011111111 12346889999999887532 34578888899999999999999999987
Q ss_pred CCCCC-HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHH
Q 009663 245 NIRPN-QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWN 320 (529)
Q Consensus 245 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 320 (529)
...|+ ...|..+..++...|++++|...++.+++..+ .+..++..+..++...|++++|...|++..+ .+...+.
T Consensus 359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 34565 55778888889999999999999999988754 3567888899999999999999999998754 3455788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCCh-h-------H
Q 009663 321 SMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI-E-------H 392 (529)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~-------~ 392 (529)
.+...+.+.|++++|+..|++..+ ..+.+...+..+...+...|++++|...|++.... .|+. . .
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l 510 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKK----NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHH
Confidence 889999999999999999999864 22334677888889999999999999999998743 3421 1 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
++.....+...|++++|.+++++. .+.|+ ...+..+...+...|++++|+..|+++.++.+...
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 222223344579999999999986 55664 55788899999999999999999999999877533
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.7e-15 Score=145.65 Aligned_cols=185 Identities=17% Similarity=0.166 Sum_probs=124.6
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC---------
Q 009663 299 GSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH--------- 366 (529)
Q Consensus 299 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~--------- 366 (529)
+...+|...++.... .++..++.+...+.....+..|..-|..... .....+|..+...|...|..
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~--~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILK--KTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHh--hhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 344444444444332 2344555555566666666666665554443 01122455555555554432
Q ss_pred ---CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHH
Q 009663 367 ---GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 367 ---~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
.+..++|+++|.++.+. .| |...-+.+.-.++..|++.+|..+|... ...-...+|-.+..+|...|++..
T Consensus 622 ek~kk~~~KAlq~y~kvL~~---dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRN---DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHH
Confidence 23467788888877743 44 6677777888888999999999999887 223355678888999999999999
Q ss_pred HHHHHHHHHhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 441 AEFAVKKLIEID--PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 441 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
|++.|+...+.. .+++.+...|++++.+.|++.+|.+.+.......+.
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 999999888733 346778888999999999999999998888776553
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=2.6e-14 Score=145.78 Aligned_cols=426 Identities=8% Similarity=0.016 Sum_probs=314.0
Q ss_pred HHHHHHhhcCCChhHHHHHhhcCCC--CCh-hHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCcc
Q 009663 50 KLVRFCTLKLSNLTYARFIFDHLTT--PNT-YLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPD 126 (529)
Q Consensus 50 ~ll~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 126 (529)
.-+-..++.| +++.|+..|++... |+. .....++..+... |+.++|+..+++..... +........+...+..
T Consensus 39 ~~aii~~r~G-d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAG-DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQSSM--NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHHH
Confidence 3344456777 99999999999873 443 1233788888888 99999999999998321 2233333333567889
Q ss_pred CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCHHHHHHHH
Q 009663 127 VLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--RNVVSWTAMISGYTRVGDIKNAASLF 204 (529)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~ 204 (529)
.|++++|.++++.+.+..+. +...+..++..+...+ +.++|++.++++.. |+...+..++..+...++..+|++.+
T Consensus 115 ~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG-RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999998644 5677778889999999 99999999999987 44444433434444456665699999
Q ss_pred hhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHH------HHHHHHh-hcc----CC---ch
Q 009663 205 DSMPD--R-DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTL------VCALSAI-GHT----GM---LQ 267 (529)
Q Consensus 205 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~------~~ll~~~-~~~----~~---~~ 267 (529)
+++.+ | +...+..+..+..+.|-...|+++..+-... +.+..... ..+++-- ... .+ .+
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL----VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc----cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 99865 3 5667888889999999999999888765422 33332221 1111111 111 12 23
Q ss_pred HHHHHHHHHHHh-CCCCCc-cHH-H---HHHHHHHhCCCHHHHHHHHhhcCCCC--hh--HHHHHHHHHHHcCChhHHHH
Q 009663 268 LGKVIHGYVYRN-GLDLDS-FIS-N---ALIDMYGKCGSLKEARRAFDRNSKKR--LT--SWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 268 ~a~~~~~~~~~~-~~~~~~-~~~-~---~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~~~~~~a~~ 337 (529)
.|+.-++.+... +..|.. ..| . -.+-++...|++.++++.|+.+...+ +. +-..+..+|...+++++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 455555555542 222322 222 2 23456778999999999999998654 23 55678899999999999999
Q ss_pred HHHHHhhcccCC-----CCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHH
Q 009663 338 VFEEMMRCQDHN-----IRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYR----------IEPQ---IEHYGCLVDL 399 (529)
Q Consensus 338 ~~~~m~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~ 399 (529)
+|+.+.. .. ..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..
T Consensus 349 l~~~~~~---~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 349 ILSSLYY---SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHhh---ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999865 22 123444457889999999999999999999986311 0122 2345567888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 009663 400 LGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
+...|++.+|++.++++ ...| |......+...+...|.+.+|.+.++.+..+.|++..+....+.++...|+|++|..
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999 4455 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCc
Q 009663 478 VRKMLKDRNAY 488 (529)
Q Consensus 478 ~~~~~~~~~~~ 488 (529)
+.+.+.+....
T Consensus 506 ~~~~l~~~~Pe 516 (822)
T PRK14574 506 LTDDVISRSPE 516 (822)
T ss_pred HHHHHHhhCCC
Confidence 99999887654
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.2e-14 Score=142.05 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALE 411 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 411 (529)
.++|+++|.+.. ..-+.|...-+.+.-.++..|++..|..+|..+.+.. .-...+|-.+..+|..+|++-.|.+
T Consensus 628 ~~KAlq~y~kvL----~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 628 QEKALQLYGKVL----RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHH----hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHH
Confidence 345555555552 2222344555555555556666666666666665431 2234455556666666666666666
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 412 VVKGM----KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 412 ~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
.|+.. ....+..+.+.|..++.+.|.+.+|.+.+..+....|.++.+...++...
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 66554 12235555666666666666666666666666666666666555554443
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.5e-13 Score=122.60 Aligned_cols=412 Identities=14% Similarity=0.124 Sum_probs=257.9
Q ss_pred cHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-CCh-------------------------hHH
Q 009663 12 LNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL-SNL-------------------------TYA 65 (529)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~-------------------------~~A 65 (529)
+.+.++.++ ..+...++--+++.|.+.|.+.++.+-..|++..+-.+ .++ +-|
T Consensus 118 ~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 344455544 45677778889999999999888877766665544322 011 112
Q ss_pred HHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCC
Q 009663 66 RFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGF 145 (529)
Q Consensus 66 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 145 (529)
. ++-+..+.+..+|..||.++|+- ...+.|.++|++.....+ +.+..+||.+|.+-.-. ...+++.+|....+
T Consensus 197 d-L~~E~~PKT~et~s~mI~Gl~K~-~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 197 D-LLFETLPKTDETVSIMIAGLCKF-SSLERARELYKEHRAAKG-KVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred H-HHHhhcCCCchhHHHHHHHHHHH-HhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 2 22222345566788888888888 888888888888887776 88888888888874322 22778888888888
Q ss_pred CCchhHHHHHHHHHHhcCCCHHHHHHH----HhhCCC----CChhhHHHHHHHHHhcCCHHH-HHHHHhhCCC-------
Q 009663 146 EQYPVVETALVNSYSRSGNDIGIARKL----FDEMSD----RNVVSWTAMISGYTRVGDIKN-AASLFDSMPD------- 209 (529)
Q Consensus 146 ~~~~~~~~~l~~~~~~~g~~~~~A~~~----~~~~~~----~~~~~~~~ll~~~~~~g~~~~-A~~~~~~~~~------- 209 (529)
.||..|+|+++.+..+.| +++.|.+. +.+|++ |...+|..+|..+++.++..+ +..++.++..
T Consensus 270 ~Pnl~TfNalL~c~akfg-~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFG-KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CCchHhHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 889999999998888888 77766544 344432 777788888887777776543 3333333321
Q ss_pred -----CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCC-CCCC---HHHHHHHHHHhhccCCchHHHHHHHHHHHhC
Q 009663 210 -----RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDN-IRPN---QVTLVCALSAIGHTGMLQLGKVIHGYVYRNG 280 (529)
Q Consensus 210 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 280 (529)
.|...|..-+..|....+.+-|.++-.-........ +.|+ ..-|..+....+.....+.-...|+.|+-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 133445666666667777776766655443211111 2222 1234455666667777777777777777666
Q ss_pred CCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH---HH
Q 009663 281 LDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV---TF 357 (529)
Q Consensus 281 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~---~~ 357 (529)
+-|+..+...++.+..-.|.++-..+++..+..-+- .-+.+--++++..+.. ....|+.. -+
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh------------t~r~~l~eeil~~L~~---~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH------------TFRSDLREEILMLLAR---DKLHPLTPEREQL 493 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh------------hhhHHHHHHHHHHHhc---CCCCCCChHHHHH
Confidence 667777777777777777777766666655442221 1112223344444443 33344322 23
Q ss_pred HHHHHHHhCCCcHHH-HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHH
Q 009663 358 ISLLNACTHGGLVEQ-GRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-------KIEPDEVVWGSLL 429 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~ 429 (529)
..+..-|. -++.+ ....-.++. ....+....+...-.+.+.|+.++|.++|.-+ +..|......-++
T Consensus 494 ~~~~ak~a--ad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 494 QVAFAKCA--ADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHH--HHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 33322222 12222 222223333 23445667788888899999999999988766 2344455555677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
+.-...++...|+.+++-+...+
T Consensus 569 d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Confidence 77788889999999999997765
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=9.7e-13 Score=123.48 Aligned_cols=365 Identities=12% Similarity=0.083 Sum_probs=227.4
Q ss_pred hHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHH
Q 009663 116 IYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYT 192 (529)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~ 192 (529)
||......|.+.+.++-|..+|...++-- +-+...|......--..| ..+.-..+|++... | ....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hg-t~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHG-TRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 34444444444444444444444444431 223334444443333444 44444455544443 2 2234444455555
Q ss_pred hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHH
Q 009663 193 RVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLG 269 (529)
Q Consensus 193 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 269 (529)
..|++..|..++....+ .+...|-.-+.......+++.|..+|.+.. ...|+...|.--+...--.+..++|
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar-----~~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR-----SISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh-----ccCCcchhhHHHhHHHHHhhhHHHH
Confidence 66666666666665443 234456666666666677777777777666 4456666555555555555667777
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcc
Q 009663 270 KVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQ 346 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 346 (529)
+++++..++.-+ .-...|-.+...+-+.++.+.|...|..-.+. .+..|..+...-.+.|...+|..++++..
T Consensus 671 ~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar--- 746 (913)
T KOG0495|consen 671 LRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR--- 746 (913)
T ss_pred HHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH---
Confidence 777766666532 23345666666677777777777776654432 34466666666666777777777777765
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 009663 347 DHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWG 426 (529)
Q Consensus 347 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 426 (529)
..-+-+...|...|+.-.+.|+.+.|..+..++.+. ++.+...|..-|....+.++-......+++. ..|+.+..
T Consensus 747 -lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVll 821 (913)
T KOG0495|consen 747 -LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLL 821 (913)
T ss_pred -hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHH
Confidence 333345566777777777777777777777666653 3445556666666666666655555444443 45677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEE
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEV 498 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 498 (529)
++...+....+++.|.+.|.+++..+|++..+|..+...+.+.|.-++-.+++++...-. |+-|..|.-+
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 888888889999999999999999999999999999999999999998889998886543 4445566433
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=2.9e-14 Score=127.92 Aligned_cols=413 Identities=15% Similarity=0.104 Sum_probs=228.9
Q ss_pred CchhHHHHHHHHHhhcCCChhHHHHHhhcCCC----CChhH-HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcch-
Q 009663 43 QTNFYAFKLVRFCTLKLSNLTYARFIFDHLTT----PNTYL-YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFI- 116 (529)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~- 116 (529)
.+-.+...|.+-|.... -..+|+..++-+.. ||.-. -..+-..+.+. +.+.+|+++|+..+..- |..+..+
T Consensus 199 ltfsvl~nlaqqy~~nd-m~~ealntyeiivknkmf~nag~lkmnigni~~kk-r~fskaikfyrmaldqv-psink~~r 275 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEAND-MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKK-REFSKAIKFYRMALDQV-PSINKDMR 275 (840)
T ss_pred chHHHHHHHHHHhhhhH-HHHHHhhhhhhhhcccccCCCceeeeeecceeeeh-hhHHHHHHHHHHHHhhc-cccchhhH
Confidence 34456667777777776 78888888887752 33221 12234456677 88999999998877652 2333333
Q ss_pred ---HHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---------------
Q 009663 117 ---YPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--------------- 178 (529)
Q Consensus 117 ---~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--------------- 178 (529)
.+.+.-.+.+.|.++.|..-|+...+. .|+..+-..|+-++..-| +-++..+.|.+|..
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 333334578999999999999999875 577777666777777788 99999999999864
Q ss_pred -CChhhHHHHH-----HHHHhcC--CHHHHHHHHhhCC----CCChh-------------hHHH--------HHHHHHhC
Q 009663 179 -RNVVSWTAMI-----SGYTRVG--DIKNAASLFDSMP----DRDVP-------------AWNS--------VIAGCTQN 225 (529)
Q Consensus 179 -~~~~~~~~ll-----~~~~~~g--~~~~A~~~~~~~~----~~~~~-------------~~~~--------li~~~~~~ 225 (529)
|+....+.-| .-+-+.. +-++++-.-.++. .|+-. .+.. -...|.+.
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 2222222222 1122211 1222222222222 22211 0111 12357788
Q ss_pred CChhHHHHHHHHhhhcccCCCCCCHHHHHHH--HHHhh----------------------------------ccCCchHH
Q 009663 226 GLFSDAISFFRRMGMEVSDNIRPNQVTLVCA--LSAIG----------------------------------HTGMLQLG 269 (529)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~l--l~~~~----------------------------------~~~~~~~a 269 (529)
|+++.|+++++-..+. ..+.-+..-+.+ +..+. ..|++++|
T Consensus 433 ~d~~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred cCHHHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 9999999888877643 222211111111 11111 22445555
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcc
Q 009663 270 KVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQ 346 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 346 (529)
...|++.+...-......|| +.-.+-..|++++|+++|-++. ..+......+...|....+...|++++-+..
T Consensus 510 ~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~--- 585 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN--- 585 (840)
T ss_pred HHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---
Confidence 55555554433222222222 1223344555555555554432 2344445555555656666666666665552
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 009663 347 DHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVW 425 (529)
Q Consensus 347 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 425 (529)
.-++-|.....-|...|-+.|+-.+|.+.+-.--. -++.+..+..-|...|....-++++..+|++. -+.|+..-|
T Consensus 586 -slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 586 -SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred -ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 22222444555555666666666666555443321 22335555555666666666666666666665 456666666
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 426 GSLLNGC-KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 426 ~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
..++..| .+.|++..|.++|+...+..|.+......|.+.+...|.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 6665543 346666666666666666666666666666666665554
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1.6e-16 Score=145.53 Aligned_cols=258 Identities=14% Similarity=0.156 Sum_probs=114.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH-HHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV-CALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY 295 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (529)
.+...+.+.|++++|+++++..... ..+|+...|- .+...+...++.+.|...++++...+.. +...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~---~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK---IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-
Confidence 3466778889999999999654322 2245444444 4444566778899999999999887654 56667777777
Q ss_pred HhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 296 GKCGSLKEARRAFDRNSK--KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
...+++++|.+++...-+ ++...+..++..+...++++++..+++.+.. .....++...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE--LPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 688999999998876533 3455777888889999999999999999764 133456777888888999999999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 374 RAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
...++++.+. .| +......++..+...|+.+++.++++.. ..+.|+..+..+..++...|++++|...++++.+
T Consensus 166 ~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 9999999865 67 5788889999999999999988888777 2245667788999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 451 IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 451 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
.+|+|+.+...++.++...|+.++|.++.+++..
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999887653
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=6.8e-14 Score=136.00 Aligned_cols=133 Identities=20% Similarity=0.316 Sum_probs=106.5
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-C--CCCCHHHHHHHHHHHHHcC
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM-K--IEPDEVVWGSLLNGCKIYG 436 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--~~p~~~~~~~l~~~~~~~g 436 (529)
-++.+.+..+....+....... .+.| +...|.-+.++|.+.|++.+|+.+|..+ . ..-+...|..+..+|...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3444555555555555555544 5444 5778999999999999999999999998 2 2235779999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccE
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSW 495 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 495 (529)
.+++|++.|++++...|++..+...|+..+.+.|+.++|.+++..+...+....+++.|
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999987443333355555
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.1e-12 Score=116.82 Aligned_cols=433 Identities=14% Similarity=0.141 Sum_probs=304.7
Q ss_pred ChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 009663 76 NTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETAL 155 (529)
Q Consensus 76 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 155 (529)
+...|-....--..+ +++..|.++|++.+.-. ..+...|..-+..=.+...+..|..+++..+..-+..| ..|-..
T Consensus 72 ~~~~WikYaqwEesq-~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY 147 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQ-KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHH
Confidence 334444444444455 78888999999888765 55666677777777788888889999988887643323 445555
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhC--CCCChhhHHHHHHHHHhCCChhHH
Q 009663 156 VNSYSRSGNDIGIARKLFDEMSD--RNVVSWTAMISGYTRVGDIKNAASLFDSM--PDRDVPAWNSVIAGCTQNGLFSDA 231 (529)
Q Consensus 156 ~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 231 (529)
+.+--..| ++..|.++|+.-.+ |+..+|++.|+.-.+-+.++.|..++++. ..|++.+|-.....-.+.|+..-|
T Consensus 148 ~ymEE~Lg-Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 148 IYMEEMLG-NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHHhc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 55566668 88999999988765 88889999999888888999999999884 468888888888888888888888
Q ss_pred HHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHhCCCHHHHHHH---
Q 009663 232 ISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLD-SFISNALIDMYGKCGSLKEARRA--- 307 (529)
Q Consensus 232 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~--- 307 (529)
..+|........ .-.-+...+.+...--.....++.|..+|.-+++.-+... ...|..+...--+-|+.....+.
T Consensus 227 R~VyerAie~~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 888887764300 1111222333333334556678888888888877643321 23444444444445554443333
Q ss_pred -----HhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH--H---HHHH-----HHHHhCCCc
Q 009663 308 -----FDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV--T---FISL-----LNACTHGGL 369 (529)
Q Consensus 308 -----~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~--~---~~~l-----~~~~~~~~~ 369 (529)
|+.+... |..+|--.+..-...|+.+...++|+++. .+++|-.. . |.-| +-.-....+
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI----anvpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI----ANVPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH----ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2333333 44577777888888899999999999988 67777332 1 1111 111234678
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH----HhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009663 370 VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLL----GRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 370 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
++.+.++|+...+ +-| ...||..+--.| .++.++..|.+++... |..|...++...|..-.+.++++....
T Consensus 382 ~ertr~vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 8999999998884 455 455666555444 4778899999999887 889999999999999889999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHH
Q 009663 444 AVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALE 523 (529)
Q Consensus 444 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (529)
+|++.++.+|.+..+|...+..-...|+++.|..+|+-..+...-..|..-|- +|+.-.-.-+..+.+.++++
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk-------aYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK-------AYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH-------HhhhhhhhcchHHHHHHHHH
Confidence 99999999999999999999888889999999999998887765444554442 44444445566677888888
Q ss_pred HHHhc
Q 009663 524 SMVAL 528 (529)
Q Consensus 524 ~~~~~ 528 (529)
+|++.
T Consensus 532 rlL~r 536 (677)
T KOG1915|consen 532 RLLDR 536 (677)
T ss_pred HHHHh
Confidence 87653
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2.8e-14 Score=134.47 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=220.8
Q ss_pred cCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHH
Q 009663 194 VGDIKNAASLFDSMPDR---DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 194 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 270 (529)
.-+..+|...|..++.. ...+...+..+|...+++++|.++|+.+.+. .+-..-+..+|.+.+.-+-+ +-++
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~-~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI-EPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccchhHHHHHHHHHHh----hHHH
Confidence 34678889999886542 3355667789999999999999999999843 11122256677777764432 1223
Q ss_pred HHHH-HHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHHhhcc
Q 009663 271 VIHG-YVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL---TSWNSMINSFALHGQSENSICVFEEMMRCQ 346 (529)
Q Consensus 271 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 346 (529)
..+. .+.+.. +..+.+|.++..+|.-.++.+.|++.|++..+-|. .+|+.+..-+.....+|+|...|+...
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al--- 482 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL--- 482 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---
Confidence 3332 233332 34688999999999999999999999999876554 488999999999999999999999984
Q ss_pred cCCCCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH
Q 009663 347 DHNIRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DE 422 (529)
Q Consensus 347 ~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 422 (529)
++.|.. ..|..+...|.++++++.|+-.|+++. .+.| +......+...+.+.|+.|+|+++++++ ...| |+
T Consensus 483 --~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 483 --GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred --cCCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 455533 356667788999999999999999998 6678 5777788889999999999999999998 4444 66
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
..-...+..+...+++++|++.+++++++-|++..++..++..|.+.|+.+.|+.-|.=+.+...
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66666777788899999999999999999999999999999999999999999988866654433
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=1.6e-11 Score=119.80 Aligned_cols=458 Identities=10% Similarity=0.027 Sum_probs=271.1
Q ss_pred HHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhc---CCCCChhHHHHHHHHHhcCCCChHH
Q 009663 20 LERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDH---LTTPNTYLYTAMITAYASQPAHASS 96 (529)
Q Consensus 20 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~~ 96 (529)
+-+.|+.++|..|...++++. +..+..|.+|-..|-.+| +.+++...+-. +.+.|...|-.+-....+. |++++
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~-~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLSEQL-GNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-ccHHH
Confidence 345699999999999999884 557778999999999999 99999887643 3466778899888888888 99999
Q ss_pred HHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCCCHHHHHHH
Q 009663 97 AFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETA----LVNSYSRSGNDIGIARKL 172 (529)
Q Consensus 97 a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----l~~~~~~~g~~~~~A~~~ 172 (529)
|.-.|.+.++.. +++-..+-.-...|-+.|+...|.+.+.++....++.|..-... .+..+...+ +-+.|.+.
T Consensus 226 A~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~-~~e~a~~~ 302 (895)
T KOG2076|consen 226 ARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN-ERERAAKA 302 (895)
T ss_pred HHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 999999999987 67777777777889999999999999999998865444443333 345566777 77888888
Q ss_pred HhhCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------------C-----ChhhHH
Q 009663 173 FDEMSD-----RNVVSWTAMISGYTRVGDIKNAASLFDSMPD--------------------------R-----DVPAWN 216 (529)
Q Consensus 173 ~~~~~~-----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------------------------~-----~~~~~~ 216 (529)
++.... -+...++.++..+.+...++.|......+.. + +...+
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 887765 3456778888888888888887766655432 0 11110
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCC--CCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNI--RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDM 294 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (529)
.++-++......+....+....... .+ .-+...|.-+..++...|++..|+.++..+.......+..+|-.+..+
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~---n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVED---NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHh---cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 1111222222222222222222221 22 223334555555556666666666666555555444445555555556
Q ss_pred HHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhh-----cccCCCCCCHHHHHHHHHHHhC
Q 009663 295 YGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMR-----CQDHNIRPDGVTFISLLNACTH 366 (529)
Q Consensus 295 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~p~~~~~~~l~~~~~~ 366 (529)
|...|.++.|.+.|+.+... +...--.|...+.+.|+.++|.+++..+.. ....+..|+..........+..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 66666666666655554332 222333444555555666665555555321 0001122222222222222223
Q ss_pred CCcHHHHHHHHHHhH--------------------------------------------------------------Hhc
Q 009663 367 GGLVEQGRAYFKLMT--------------------------------------------------------------KTY 384 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~--------------------------------------------------------------~~~ 384 (529)
.|+.++-..+-..+. ...
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 333222111111111 000
Q ss_pred CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 009663 385 RIEPQ--IEHYGCLVDLLGRAGRFEEALEVVKGM-K---IEPDEV----VWGSLLNGCKIYGRTDFAEFAVKKLIEI--- 451 (529)
Q Consensus 385 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 451 (529)
++.-+ -..+.-++.++++.|++++|+.+...+ . +.-+.. .-...+.++...+++..|...++-+...
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 11111 134455677788888888888888776 1 111222 2234455567788888888888888775
Q ss_pred --CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 452 --DPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 452 --~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+|.-...|+.......+.|+-.--.+++..+.....
T Consensus 699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~ 736 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNK 736 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 554455555455555566655555555555444433
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=3.4e-11 Score=113.31 Aligned_cols=461 Identities=13% Similarity=0.114 Sum_probs=304.1
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009663 30 KQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVR 106 (529)
Q Consensus 30 ~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 106 (529)
.+|+....++ +|.++.. -.+..... +.+.|+.++.+.. +.+...|. ++++. .-++.|..+++..++
T Consensus 366 ~RVlRKALe~-iP~sv~L----WKaAVelE-~~~darilL~rAveccp~s~dLwl----AlarL-etYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRL----WKAAVELE-EPEDARILLERAVECCPQSMDLWL----ALARL-ETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHh-CCchHHH----HHHHHhcc-ChHHHHHHHHHHHHhccchHHHHH----HHHHH-HHHHHHHHHHHHHHh
Confidence 3455555544 3333333 33333444 5666777777665 33444443 34444 667788888888776
Q ss_pred CCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC----
Q 009663 107 RGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIV----KSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD---- 178 (529)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---- 178 (529)
.= +.+...|.+....=-..|+.+....+.++-+ ..|+..+..-|..=...|-..| ..-.+..+......
T Consensus 435 ~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag-sv~TcQAIi~avigigvE 511 (913)
T KOG0495|consen 435 II--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG-SVITCQAIIRAVIGIGVE 511 (913)
T ss_pred hC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhhccc
Confidence 52 6677777777776677777777777665543 3466667666666666666667 66666666655543
Q ss_pred --CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHH
Q 009663 179 --RNVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTL 253 (529)
Q Consensus 179 --~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~ 253 (529)
.--.+|+.-...|.+.+.++-|..+|....+ .+...|......--..|..+....+|++.... ++-....+
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~----~pkae~lw 587 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ----CPKAEILW 587 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh----CCcchhHH
Confidence 2235677777778888888888877776554 24455666665555667777777788777643 33334444
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCC
Q 009663 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRLTSWNSMINSFALHGQ 331 (529)
Q Consensus 254 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~ 331 (529)
.......-..|++..|..++..+.+..+. +..++-.-+.....+..++.|+.+|.+... +....|..-+......++
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 44555566678888888888887777654 566777777777788888888888876553 334466666666666778
Q ss_pred hhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEAL 410 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 410 (529)
.++|.+++++..+ ..|+. ..|..+...+.+.++.+.|...|..-.+ .++..+..|-.|.+.=.+.|.+-.|.
T Consensus 667 ~eeA~rllEe~lk-----~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 667 VEEALRLLEEALK-----SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHHHHHHHHHHHH-----hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHH
Confidence 8888888877753 33443 4566666777777777777777766543 22334666777777777777888888
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------------------Cchh
Q 009663 411 EVVKGMK-IEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN------------------------------NGGY 458 (529)
Q Consensus 411 ~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------------------------~~~~ 458 (529)
.++++.. .+| +...|-..+..-.+.|+.+.|..+..++++.-|+ |+.+
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphV 819 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHV 819 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchh
Confidence 8887771 234 6777777788878888888888777777664444 7778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHH
Q 009663 459 GIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525 (529)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (529)
...++..+....++++|++.|.+..+.+.. -|-.|+ .|+.....||.-++-.+++++.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d--~GD~wa-------~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPD--NGDAWA-------WFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCc--cchHHH-------HHHHHHHHhCCHHHHHHHHHHH
Confidence 888888999999999999999998877654 333443 3455555666655555555543
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=2.6e-13 Score=121.90 Aligned_cols=403 Identities=10% Similarity=0.076 Sum_probs=267.4
Q ss_pred chHHHHHHHHHHhCCCCchhHH-HHHHHHHhhcCCChhHHHHHhhcCC----CC----ChhHHHHHHHHHhcCCCChHHH
Q 009663 27 NHLKQLQSFLTTLGQSQTNFYA-FKLVRFCTLKLSNLTYARFIFDHLT----TP----NTYLYTAMITAYASQPAHASSA 97 (529)
Q Consensus 27 ~~~~~i~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~~A~~~~~~~~----~~----~~~~~~~ll~~~~~~~~~~~~a 97 (529)
.++...++.+.+....|+.-.. -.+-..+.+.+ .+.+|.+.+.-.. .- .+...|.+-..+.+. |.++.|
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~-gqy~da 295 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA-GQYDDA 295 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehh-hHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec-ccchhh
Confidence 4455566667776666655432 22334566666 8889988875432 21 223455555677788 999999
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCC------------CchhHHHHHH-----HHHH
Q 009663 98 FSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFE------------QYPVVETALV-----NSYS 160 (529)
Q Consensus 98 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~l~-----~~~~ 160 (529)
+..|+...+. .|+..+-..++-++...|+-++..+.|..|+..... |+....+..+ .-+-
T Consensus 296 insfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 296 INSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred HhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 9999999887 577666556666667778999999999999865322 2222232222 1222
Q ss_pred hcC-CCHHHHHHHHhhCCC----CChh-------------hHHH--------HHHHHHhcCCHHHHHHHHhhCCCCChhh
Q 009663 161 RSG-NDIGIARKLFDEMSD----RNVV-------------SWTA--------MISGYTRVGDIKNAASLFDSMPDRDVPA 214 (529)
Q Consensus 161 ~~g-~~~~~A~~~~~~~~~----~~~~-------------~~~~--------ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 214 (529)
+.+ .+.+++.-.--++.. |+-. .+.. -...+.++|+++.|++++.-+...|..+
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 221 012222222222222 2211 0111 1223678999999999988776532211
Q ss_pred -----------------------------------HHHHH-----HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH
Q 009663 215 -----------------------------------WNSVI-----AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV 254 (529)
Q Consensus 215 -----------------------------------~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~ 254 (529)
||.-. ..-...|++++|.+.|++.... ...-....|+
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---dasc~ealfn 529 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN---DASCTEALFN 529 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---chHHHHHHHH
Confidence 11100 0112357899999999998633 2222222233
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhc---CCCChhHHHHHHHHHHHcCC
Q 009663 255 CALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRN---SKKRLTSWNSMINSFALHGQ 331 (529)
Q Consensus 255 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~ 331 (529)
+- -.+-..|++++|++.|-++...- ..+..+...+...|....+...|++++.+. ...|+.....|...|-+.|+
T Consensus 530 ig-lt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 530 IG-LTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hc-ccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence 22 23567899999999987765432 235667778899999999999999999765 45688899999999999999
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCChHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDL-LGRAGRFEEAL 410 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~ 410 (529)
-..|.+++-+-- .-++.+..|..-|...|....-+++++.+|++.. -+.|+..-|..++.. +.+.|++.+|+
T Consensus 608 ksqafq~~ydsy----ryfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 608 KSQAFQCHYDSY----RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hhhhhhhhhhcc----cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999887663 3345577888888888888888999999999986 679999999887755 56789999999
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009663 411 EVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKK 447 (529)
Q Consensus 411 ~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 447 (529)
++++.. +++.|..++..|+..+...|- .++.+.-++
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 999998 666688888888888777664 234444333
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=3.1e-13 Score=129.56 Aligned_cols=275 Identities=13% Similarity=0.058 Sum_probs=181.3
Q ss_pred cCCHHHHHHHHhhCCCC--ChhhHHHH-HHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH--HHHHHhhccCCchH
Q 009663 194 VGDIKNAASLFDSMPDR--DVPAWNSV-IAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV--CALSAIGHTGMLQL 268 (529)
Q Consensus 194 ~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~ 268 (529)
.|+++.|++.+....+. ++..+..+ ..+..+.|+++.|.+.+.++. ...|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~-----~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA-----ELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----hcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 46777777666654432 22222222 344467777777777777776 3355543332 22445667777777
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh-----------hHHHHHHHHHHHcCChhHHHH
Q 009663 269 GKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL-----------TSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~~~~~~a~~ 337 (529)
|...++.+.+..+. +..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777777766543 456666777777777777777777766654321 123333443344455566666
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 009663 338 VFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM- 416 (529)
Q Consensus 338 ~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 416 (529)
+++...+ ..+.+......+...+...|+.++|..++++..+. .|+.... ++.+....++.+++++.++..
T Consensus 251 ~w~~lp~----~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 251 WWKNQSR----KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHhCCH----HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHH
Confidence 6666532 23346667777888888888999998888888743 4554322 233334558888888888877
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 417 KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 417 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+..| |+....++...|.+.+++++|.+.|+++.+..| +...+..++.++.+.|+.++|.+++++-..
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455 456677888888889999999999999998888 456667788888899999999888876644
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1e-12 Score=117.34 Aligned_cols=348 Identities=12% Similarity=0.104 Sum_probs=246.5
Q ss_pred CCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC----CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcch
Q 009663 41 QSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT----TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFI 116 (529)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 116 (529)
.+-++.++..+|.+.|+-. ..+.|.+++++.. +-+..+||.+|.+..-. .-.+++.+|..... .||..|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-----~~K~Lv~EMisqkm-~Pnl~T 275 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASSYS-----VGKKLVAEMISQKM-TPNLFT 275 (625)
T ss_pred cCCCchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-----ccHHHHHHHHHhhc-CCchHh
Confidence 4557789999999999998 9999999999875 45778899998776544 23789999999998 999999
Q ss_pred HHHHHHhCccCCCchHH----HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCH-HHHHHHHhhCCC-----------C-
Q 009663 117 YPHVLKSCPDVLESRGT----KMVHTQIVKSGFEQYPVVETALVNSYSRSGNDI-GIARKLFDEMSD-----------R- 179 (529)
Q Consensus 117 ~~~l~~~~~~~~~~~~a----~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~~A~~~~~~~~~-----------~- 179 (529)
+|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+.+.+ +. ..|..++.++.. |
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~-dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES-DPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC-CchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999988765 578889999999999999999999999988 66 345555555532 2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC
Q 009663 180 NVVSWTAMISGYTRVGDIKNAASLFDSMPD--------RD---VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP 248 (529)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p 248 (529)
|..-|..-+..|.+..+.+-|.++..-+.. ++ ..-|..+....++....+.-+.+|+.|... -+-|
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~---~y~p 431 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS---AYFP 431 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---eecC
Confidence 445567777888888999888887665543 22 123566777788888999999999999655 7889
Q ss_pred CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 009663 249 NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFAL 328 (529)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 328 (529)
+..+...++++....+.++-.-+++..++..|...+...-.-+...+++.. ..++...-..+-...++
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAK 499 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999988875443333333333333322 01211111111111111
Q ss_pred --cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH---HHHHHHHhc
Q 009663 329 --HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG---CLVDLLGRA 403 (529)
Q Consensus 329 --~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~ 403 (529)
..-.+.....-.++.. ..++| ...+.++-.+.+.|..++|.+++..+.+.+.-.|-....+ -+++.-.+.
T Consensus 500 ~aad~~e~~e~~~~R~r~---~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 500 CAADIKEAYESQPIRQRA---QDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHhhHHHHHh---ccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 0111112222334433 44444 4456666677889999999999998865544344333344 566666777
Q ss_pred CChHHHHHHHHhC
Q 009663 404 GRFEEALEVVKGM 416 (529)
Q Consensus 404 g~~~~A~~~~~~~ 416 (529)
+....|...++-|
T Consensus 575 ~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 575 NSPSQAIEVLQLA 587 (625)
T ss_pred CCHHHHHHHHHHH
Confidence 7888888887776
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.3e-12 Score=116.33 Aligned_cols=328 Identities=14% Similarity=0.101 Sum_probs=238.5
Q ss_pred CCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-hHHHHHHHHH
Q 009663 145 FEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVP-AWNSVIAGCT 223 (529)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~ 223 (529)
...|...+-.....+-+.| ..+.|...|......-+..|.+.+....-..+.+.+..+.......+.. .=-.+..++.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~-~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELG-LLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred ccchhHHHHHHHHHHHhhc-hHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 3445555554555666677 7888888888777655555555555444445555554444444332211 1122345666
Q ss_pred hCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCC--CCccHHHHHHHHHHhCCCH
Q 009663 224 QNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLD--LDSFISNALIDMYGKCGSL 301 (529)
Q Consensus 224 ~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 301 (529)
...+.+++..-....... |++-+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-.-....++
T Consensus 239 el~q~~e~~~k~e~l~~~---gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSV---GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHhc---cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 666778887777777644 56655555555555667888999999999999987541 2444555544322221121
Q ss_pred H-HHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 302 K-EARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 302 ~-~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
. -|..++ .+.+-.+.|..++.+-|.-.++.++|..+|++..+ +.|. ...|+.+.+-|....+...|++-++.
T Consensus 316 s~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk-----LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK-----LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh-----cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 122222 23333455777888889999999999999999965 4554 45678888889999999999999999
Q ss_pred hHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009663 380 MTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 380 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
++ .+.| |-..|-.|.++|.-.+...=|+-+|++. .++| |...|.+|+.+|.+.++.++|+++|.++...+-.+.
T Consensus 390 Av---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 390 AV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 98 5566 7889999999999999999999999998 6667 799999999999999999999999999999887788
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.++..|+.+|.+.++.++|...+++..+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999888763
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.7e-12 Score=116.11 Aligned_cols=393 Identities=11% Similarity=0.075 Sum_probs=238.2
Q ss_pred hcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHH
Q 009663 57 LKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGT 133 (529)
Q Consensus 57 ~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (529)
..+ ++..|+.+|++.. ..+...|-..+..-.++ .....|..++++.+..-. ..|. .|...+..=-..|++..|
T Consensus 85 sq~-e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~dRAvt~lP-RVdq-lWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQK-EIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWDRAVTILP-RVDQ-LWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHHHHHHhcc-hHHH-HHHHHHHHHHHhcccHHH
Confidence 344 7788888888876 46667777777777788 888899999988877531 2232 333333334556888899
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-
Q 009663 134 KMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMS--DRNVVSWTAMISGYTRVGDIKNAASLFDSMPDR- 210 (529)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 210 (529)
.++|+.-.+ ..|+...|++.+..-.+.+ .++.|..+++... +|++.+|--...--.+.|+...|.++|+...+.
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYK-EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999988776 5788999999999888888 8999999998876 488888888888888888888888888765431
Q ss_pred -----ChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc----------------------------------------CC
Q 009663 211 -----DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS----------------------------------------DN 245 (529)
Q Consensus 211 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------------------------------------~~ 245 (529)
+...+.+....-.++..++.|.-+|+-.....+ ..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 122333333333334444444444443332100 01
Q ss_pred CCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCcc-HHHHHHHH--------HHhCCCHHHHHHHHhhcCC---
Q 009663 246 IRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSF-ISNALIDM--------YGKCGSLKEARRAFDRNSK--- 313 (529)
Q Consensus 246 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~--------~~~~g~~~~A~~~~~~~~~--- 313 (529)
.+-|-.+|--.+..-...|+.+...++|+.++..-++.... .+.-.|-. -....+.+.+.++|+...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP 397 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP 397 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 12233444444444455566666666666655442221111 11111111 1124455555665544322
Q ss_pred CChh----HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-
Q 009663 314 KRLT----SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP- 388 (529)
Q Consensus 314 ~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p- 388 (529)
.... .|......-.+..+...|.+++... -|.-|-..+|...|..-.+.++++.+..++++.. ...|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A-----IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe 469 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA-----IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPE 469 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHH-----hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChH
Confidence 1111 2333333444566667777777666 5666666677777766667777777777777766 3345
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGMKIEP----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
+..+|......=...|+.+.|..+|+-.-..| ....|.+.|+.-...|.++.|..+|+++++..+ +..+|...+.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvWisFA~ 548 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVWISFAK 548 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHHHhHHH
Confidence 55666666666667777777777776652233 244566666666667777777777777777665 4445555544
Q ss_pred H
Q 009663 465 I 465 (529)
Q Consensus 465 ~ 465 (529)
.
T Consensus 549 f 549 (677)
T KOG1915|consen 549 F 549 (677)
T ss_pred H
Confidence 3
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.1e-12 Score=115.48 Aligned_cols=215 Identities=18% Similarity=0.152 Sum_probs=175.8
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHH
Q 009663 260 IGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~ 336 (529)
+.-.|+.-.+..-|+..++....++. .|-.+..+|....+.++.+..|++.. ..|..+|..-...+.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 45568889999999999988765433 37778888999999999999998755 346678888888888899999999
Q ss_pred HHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 337 CVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 337 ~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
.-|++.+. +.| +...|..+.-+..+.+.+++++..|++..++ ++..+.+|+.....+...+++++|.+.|+.
T Consensus 415 aDF~Kai~-----L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 415 ADFQKAIS-----LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHhh-----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 99999964 555 4466777777777889999999999999875 355688999999999999999999999988
Q ss_pred C-CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 416 M-KIEPD---------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 416 ~-~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
. .+.|+ +.+--.++..-. .+++.+|+.+++++.+++|....++..|+....+.|+.++|+++|++-.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7 44443 222233333323 3899999999999999999999999999999999999999999998764
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2e-13 Score=128.79 Aligned_cols=275 Identities=13% Similarity=0.153 Sum_probs=212.1
Q ss_pred CHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhCCChhHHHHHH
Q 009663 165 DIGIARKLFDEMSD--RNV-VSWTAMISGYTRVGDIKNAASLFDSMPD------RDVPAWNSVIAGCTQNGLFSDAISFF 235 (529)
Q Consensus 165 ~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 235 (529)
...+|...|..+++ +|. .+...+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 57788888888654 333 4455667788888888888888888765 366677777765533 2233333
Q ss_pred HHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 009663 236 RRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKR 315 (529)
Q Consensus 236 ~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 315 (529)
.+-.-. .-+-.+.+|.++..+|.-.++.+.|++.|+++++.++. ...+|+.+.+-+.....+|+|...|+.....|
T Consensus 410 aq~Li~---~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 410 AQDLID---TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHh---hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 332211 23445678999999999999999999999988877542 67788988899999999999999999887766
Q ss_pred hh---HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-Ch
Q 009663 316 LT---SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QI 390 (529)
Q Consensus 316 ~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~ 390 (529)
+. +|.-+...|.+.++++.|+-.|+++. .+.| +.+....+...+.+.|+.++|+++++++. .+.| |+
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~-----~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~ 557 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV-----EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNP 557 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh-----cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCc
Confidence 65 56667788999999999999999995 4566 45566677778888999999999999988 4455 55
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
..--.-+..+...+++++|+..++++ .+.|+ ..++..++..|.+.|+.+.|+.-|.-+.+++|.-
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 55555677788899999999999999 56675 5567777788999999999999999999999863
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8.5e-12 Score=115.57 Aligned_cols=428 Identities=11% Similarity=0.014 Sum_probs=285.2
Q ss_pred hCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcC--CCCChhHHHHHHHHHhcCCCChHHHHHHHH----HHHHC-----
Q 009663 39 LGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHL--TTPNTYLYTAMITAYASQPAHASSAFSLYR----DMVRR----- 107 (529)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~----~m~~~----- 107 (529)
.++.-||....-+.+.+.-.| ..+.|..+...- ...|..+.......+.+. .++++|..++. .+...
T Consensus 43 ~~l~~dp~d~~~~aq~l~~~~-~y~ra~~lit~~~le~~d~~cryL~~~~l~~l-k~~~~al~vl~~~~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 43 AGLTNDPADIYWLAQVLYLGR-QYERAAHLITTYKLEKRDIACRYLAAKCLVKL-KEWDQALLVLGRGHVETNPFSYYEK 120 (611)
T ss_pred HhccCChHHHHHHHHHHHhhh-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHhcccchhhcchhhcch
Confidence 355677777778888888887 888888887653 467888888888888888 99999999988 32111
Q ss_pred ---CCCCCCcch----HHHHHHh-------CccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 009663 108 ---GQPQPNQFI----YPHVLKS-------CPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLF 173 (529)
Q Consensus 108 ---~~~~~~~~~----~~~l~~~-------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 173 (529)
+...+|..- .+.-... |....+.++|...+.+.+.. |+..+.++...-...=--..+-..+|
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll 196 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELL 196 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHH
Confidence 000111111 1111122 23334555555555555443 33333332222211100112223333
Q ss_pred hhCCC-----CChhhHHHHHHHH-HhcCCHHHHHHHH--hhC--CCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc
Q 009663 174 DEMSD-----RNVVSWTAMISGY-TRVGDIKNAASLF--DSM--PDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS 243 (529)
Q Consensus 174 ~~~~~-----~~~~~~~~ll~~~-~~~g~~~~A~~~~--~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (529)
+.+.- .+......+.... ++.-+.+ ....- +.+ .+.++........-+...+++.+..++++.....
T Consensus 197 ~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-- 273 (611)
T KOG1173|consen 197 ESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-- 273 (611)
T ss_pred hcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--
Confidence 32110 1111111111110 0000000 00000 000 0134555666667788899999999999998743
Q ss_pred CCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHH
Q 009663 244 DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL---TSWN 320 (529)
Q Consensus 244 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~ 320 (529)
.++....+..-|.++...|+..+-..+=.++++.-+ ....+|-++.-.|.-.|+..+|++.|.+...-|. ..|-
T Consensus 274 --dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl 350 (611)
T KOG1173|consen 274 --DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWL 350 (611)
T ss_pred --CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHH
Confidence 455566666667788899988887777777887654 4677888888888899999999999987655443 4899
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 009663 321 SMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDL 399 (529)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 399 (529)
.....|+..|..++|+..+..+.++-..--.| +--+.--|.+.++.+.|.++|..+. ++-| |+..++-+.-.
T Consensus 351 ~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 351 AFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVV 423 (611)
T ss_pred HHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhhe
Confidence 99999999999999999998875421111222 3334445778899999999999987 7777 67788888878
Q ss_pred HHhcCChHHHHHHHHhC--C---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 400 LGRAGRFEEALEVVKGM--K---IEP----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~--~---~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
....+.+.+|..+|+.. . +.+ -..+++.|+.+|.+.+.+++|+..+++++.+.|.++.++..++-+|...|
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 88899999999999876 1 111 24568889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhC
Q 009663 471 KWDEVRKVRKMLKDR 485 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~ 485 (529)
+.+.|++.|.+..-.
T Consensus 504 nld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 504 NLDKAIDHFHKALAL 518 (611)
T ss_pred ChHHHHHHHHHHHhc
Confidence 999999999877533
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=1.3e-11 Score=118.41 Aligned_cols=274 Identities=14% Similarity=0.055 Sum_probs=193.5
Q ss_pred cCCCHHHHHHHHhhCCCC--ChhhHHHH-HHHHHhcCCHHHHHHHHhhCCCC--ChhhHH--HHHHHHHhCCChhHHHHH
Q 009663 162 SGNDIGIARKLFDEMSDR--NVVSWTAM-ISGYTRVGDIKNAASLFDSMPDR--DVPAWN--SVIAGCTQNGLFSDAISF 234 (529)
Q Consensus 162 ~g~~~~~A~~~~~~~~~~--~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~--~~~~~~--~li~~~~~~g~~~~A~~~ 234 (529)
.| +++.|.+.+....+. ++..+..+ .....+.|+.+.|.+.+.++.+. +..... .....+...|++++|...
T Consensus 97 eG-d~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EG-DYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CC-CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46 677777666655442 22222222 33346677777777777776542 222222 224567777888888888
Q ss_pred HHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHhCCCHHHHHH
Q 009663 235 FRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSF-------ISNALIDMYGKCGSLKEARR 306 (529)
Q Consensus 235 ~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~ 306 (529)
++++.+. .| +......+...+.+.|+++++..++..+.+.+..++.. +|..++.......+.+...+
T Consensus 176 l~~~~~~-----~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 176 VDKLLEV-----APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHhc-----CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8777632 34 44566666777777788888888888777766543221 22333433444455667777
Q ss_pred HHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHh
Q 009663 307 AFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 307 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 383 (529)
+++.+.+ .++.....+...+...|+.++|..++++..+ ..|+... .++.+....++.+++.+..+...+.
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-----~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-----RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhh
Confidence 7776653 4667888899999999999999999998864 3444422 2334445669999999999999865
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 009663 384 YRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEI 451 (529)
Q Consensus 384 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 451 (529)
.| |+..+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+
T Consensus 324 ---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45 5777889999999999999999999998 77899999999999999999999999999999774
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.8e-11 Score=118.08 Aligned_cols=272 Identities=13% Similarity=0.016 Sum_probs=119.1
Q ss_pred CHHHHHHHHhhCCC--CChh-hHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh--hhHHHHHHHHHhCCChhHHHHHHHH
Q 009663 165 DIGIARKLFDEMSD--RNVV-SWTAMISGYTRVGDIKNAASLFDSMPD--RDV--PAWNSVIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 165 ~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~ 237 (529)
+++.|.+.+.+..+ |+.. .+-....+..+.|+.+.|.+.+.+..+ |+. .........+...|+++.|...++.
T Consensus 99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~ 178 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDK 178 (409)
T ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555544433 2211 122223344444555555555554321 221 1222234455555666666666665
Q ss_pred hhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH---H----hCCCHHHHHHHHh
Q 009663 238 MGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY---G----KCGSLKEARRAFD 309 (529)
Q Consensus 238 m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~~ 309 (529)
+.+. .| +...+..+...+...|+++.+..++..+.+.++.+.......-..++ . .....+...+.++
T Consensus 179 l~~~-----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 179 LLEM-----APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHh-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5532 23 33344455555556666666666666555554322111111000111 1 1111223333333
Q ss_pred hcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHH---HHHHHHHHhCCCcHHHHHHHHHHhHHh
Q 009663 310 RNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVT---FISLLNACTHGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 310 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 383 (529)
.... .+...+..+...+...|+.++|.+++++..+ ..|+... ...........++.+.+.+.++...+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~-----~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK-----KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh-----hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 3332 2444555555555666666666666655543 2222221 011111122234455555555554433
Q ss_pred cCCCC-Ch--hHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 384 YRIEP-QI--EHYGCLVDLLGRAGRFEEALEVVKG--M-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 384 ~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
.| ++ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 329 ---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 ---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 22 3344555555555555555555552 2 334555555555555555555555555555543
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.4e-11 Score=107.64 Aligned_cols=358 Identities=13% Similarity=0.062 Sum_probs=251.8
Q ss_pred CCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCh-hhHHHHHH
Q 009663 111 QPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNV-VSWTAMIS 189 (529)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~-~~~~~ll~ 189 (529)
..|...+......+.+.|....|...|...+..- +-.-..|..|.... . +.+.+..+...+...+. -.=-.+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t-~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---T-DIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---c-hHHHHHHHHhcCcccchHHHHHHHHH
Confidence 4555555555555677888888888887776532 22334444444433 2 45554444433332211 11122445
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCh-hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCC
Q 009663 190 GYTRVGDIKNAASLFDSMPD---RDV-PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGM 265 (529)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~ 265 (529)
++....+.+++..-.+.... ++. ..-+....+.-...++++|+.+|+++.+. ++=---|..+|+.++-+-.....
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHHHHHhhhHH
Confidence 56666677777666555443 222 22223334556678999999999999854 11112266788877765433221
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHH
Q 009663 266 LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL---TSWNSMINSFALHGQSENSICVFEEM 342 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m 342 (529)
+.++.+-.-.--+..+.|...+.+.|.-.++.++|...|++..+-|. ..|+.+..-|....+...|++.++++
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 22222222111234566788888999999999999999998776554 48999999999999999999999999
Q ss_pred hhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCC
Q 009663 343 MRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM--KIE 419 (529)
Q Consensus 343 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 419 (529)
.+ -.+-|-..|..|.++|.-.+.+.-|.-+|++.. .++| |...|.+|.++|.+.++.++|.+.|.+. .-.
T Consensus 391 vd----i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 391 VD----INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred Hh----cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 74 233477889999999999999999999999988 5577 7899999999999999999999999988 224
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE-------IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.+...+..+...+-+.++.++|.+.|++-++ .+|....+...|+..+.+.+++++|..+......-
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 4668899999999999999999999999887 44555566677888899999999999887666543
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=1.7e-11 Score=118.28 Aligned_cols=283 Identities=12% Similarity=-0.008 Sum_probs=203.3
Q ss_pred HhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHH--HHHHHHHHhhccCCc
Q 009663 192 TRVGDIKNAASLFDSMPD--RDV-PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQV--TLVCALSAIGHTGML 266 (529)
Q Consensus 192 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~--~~~~ll~~~~~~~~~ 266 (529)
...|+++.|.+.+.+..+ |++ ..+-....++.+.|+++.|.+.+.+..+. .|+.. ........+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHHHCCCH
Confidence 458999999999988765 332 33445567788899999999999998743 45543 333457778889999
Q ss_pred hHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHH----HHHHHHHHcCChhHHHHHH
Q 009663 267 QLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWN----SMINSFALHGQSENSICVF 339 (529)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~~~~~~a~~~~ 339 (529)
+.|...++.+.+..+. +..+...+...+...|+++.|.+.+..+.+. +...+. .........+..++..+.+
T Consensus 170 ~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999998753 5678889999999999999999999887754 222221 1111112233333333444
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC
Q 009663 340 EEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEH---YGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 340 ~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
..+.+..+...+.+...+..+...+...|+.++|.+++++..+. .|+... .....-.....++.+.+.+.++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 44432000112236778888889999999999999999999864 454331 111222223457888888888877
Q ss_pred -CCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 417 -KIEPD-E--VVWGSLLNGCKIYGRTDFAEFAVK--KLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 417 -~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
...|+ + ....++...+.+.|++++|.+.|+ .+.+..| ++..+..++..+.+.|+.++|.+++++...
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44553 4 567789999999999999999999 5777888 455577999999999999999999987643
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=6.4e-14 Score=128.39 Aligned_cols=252 Identities=14% Similarity=0.085 Sum_probs=69.5
Q ss_pred HHhCccCCCchHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCC
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKSG-FEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR---NVVSWTAMISGYTRVGD 196 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~ 196 (529)
...+.+.|++++|.+++....... .+.+...|..+.......+ +.+.|.+.++++... ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~-~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLG-DYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc-ccccc
Confidence 444555555555555554333322 1223333333444444445 555555555555442 22233344433 45555
Q ss_pred HHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHH
Q 009663 197 IKNAASLFDSMPD--RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHG 274 (529)
Q Consensus 197 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 274 (529)
+++|.++++..-+ +++..+...+..+.+.++++++.++++.+... ...+++...|..+...+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL--PAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555544322 33444555555666666666666666665421 1233445555555556666666666666666
Q ss_pred HHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC
Q 009663 275 YVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIR 351 (529)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 351 (529)
++++..+. +..+.+.++..+...|+.+++..+++... ..+...|..+..+|...|+.++|+.+|++..+ ..+
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~----~~p 245 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK----LNP 245 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH----HST
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc----ccc
Confidence 66665432 34455556666666666665444443322 23344555555555555666666666655532 112
Q ss_pred CCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 352 PDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 352 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
.|......+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 244444555555566666666655555443
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=9e-11 Score=101.44 Aligned_cols=278 Identities=13% Similarity=0.111 Sum_probs=159.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009663 79 LYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNS 158 (529)
Q Consensus 79 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (529)
.|-.=+..+. + .+.++|+++|-+|.+.. +-+..+..++.+.+.+.|..+.|+++++.+.++ ||...-..+
T Consensus 38 ~Yv~GlNfLL-s-~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~--- 107 (389)
T COG2956 38 DYVKGLNFLL-S-NQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRL--- 107 (389)
T ss_pred HHHhHHHHHh-h-cCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHH---
Confidence 3444444444 3 46777777777777654 445555666666677777777777777766653 221110000
Q ss_pred HHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhHHHHHH
Q 009663 159 YSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRD---VPAWNSVIAGCTQNGLFSDAISFF 235 (529)
Q Consensus 159 ~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~ 235 (529)
.+...|..-|...|-+|.|+.+|..+.+.+ ......|+..|-+..+|++|++.-
T Consensus 108 -----------------------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 108 -----------------------LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred -----------------------HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 011223344555556666666666655422 234556677777777777777777
Q ss_pred HHhhhcccCCCCCCH----HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhc
Q 009663 236 RRMGMEVSDNIRPNQ----VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRN 311 (529)
Q Consensus 236 ~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 311 (529)
+++.+. +-.+.. ..|.-+...+....+++.|..++.++.+.+.. .+.+--.+.+.+...|+++.|.+.++.+
T Consensus 165 ~~L~k~---~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 165 ERLVKL---GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHHHc---CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 766543 222221 23445555555666777777777777766543 3444445667777777888887777777
Q ss_pred CCCChh----HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCC
Q 009663 312 SKKRLT----SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIE 387 (529)
Q Consensus 312 ~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 387 (529)
.+.|.. +...|..+|.+.|+.++....+.++.+ ....++ .-..+........-.+.|..++.+-..+ .
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~ 312 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR---K 312 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh---C
Confidence 666543 556666777777777777777777654 322222 2233333333333445555555444433 5
Q ss_pred CChhHHHHHHHHHH
Q 009663 388 PQIEHYGCLVDLLG 401 (529)
Q Consensus 388 p~~~~~~~l~~~~~ 401 (529)
|+...+..|++.-.
T Consensus 313 Pt~~gf~rl~~~~l 326 (389)
T COG2956 313 PTMRGFHRLMDYHL 326 (389)
T ss_pred CcHHHHHHHHHhhh
Confidence 77666666666543
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=2.3e-11 Score=105.08 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=146.4
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChh--------HHHHHHHHHHHcCC
Q 009663 260 IGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLT--------SWNSMINSFALHGQ 331 (529)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~~~ 331 (529)
|...|-+|.|+.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+.. .|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 3344444444444444433221 12223344555555555555555554443322111 34445555666778
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEAL 410 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 410 (529)
.+.|..++.+..+ ..|+.+ .-..+.+.....|+++.|.+.|+.+.+. +..--+.+...|..+|...|+.++..
T Consensus 196 ~d~A~~~l~kAlq-----a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 196 VDRARELLKKALQ-----ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHHHHh-----hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 8889999988864 334332 2334566788899999999999999866 22223678888999999999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-H--hcCCHHHHHHHHHHHhhCC
Q 009663 411 EVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY-G--ELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 411 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~--~~g~~~~a~~~~~~~~~~~ 486 (529)
..+.++ ...+....-..+...-....-.+.|...+.+-+...| +...+..++... . .-|.+.+-+..++.|...-
T Consensus 270 ~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 270 NFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 999887 4456665555566655556667888888888888889 444444454443 2 3367889999999998887
Q ss_pred CccCCcccE
Q 009663 487 AYKTPGCSW 495 (529)
Q Consensus 487 ~~~~~~~~~ 495 (529)
++..|.+..
T Consensus 349 l~~~~~YRC 357 (389)
T COG2956 349 LRRKPRYRC 357 (389)
T ss_pred HhhcCCcee
Confidence 777776544
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=2.6e-10 Score=101.70 Aligned_cols=276 Identities=13% Similarity=0.098 Sum_probs=137.9
Q ss_pred cCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHH
Q 009663 194 VGDIKNAASLFDSMPDR---DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 194 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 270 (529)
.|++..|+++..+-.+. ....|..-..+--+.|+.+.+-.++.+..+. .-.++.....+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCCchhHH
Confidence 45555555555443221 2223333334444555555555555555421 11333333444444455555555555
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh-----------hHHHHHHHHHHHcCChhHHHHHH
Q 009663 271 VIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL-----------TSWNSMINSFALHGQSENSICVF 339 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~~~~~~a~~~~ 339 (529)
.-+..+.+.++. ++.+......+|.+.|++.....++..+.+.+. .+|..++.-....+..+.-...|
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 555555555442 344455555566666666666666555554321 14455554444444444444455
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-
Q 009663 340 EEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-K- 417 (529)
Q Consensus 340 ~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 417 (529)
+... ...+-+...-.+++.-+...|+.++|.++.++..++ +..|+ .. ..-.+.+-++.+.-.+..+.. .
T Consensus 253 ~~~p----r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 253 KNQP----RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred Hhcc----HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HH-HHHhhcCCCCchHHHHHHHHHHHh
Confidence 4443 222233334444555555666666666666666544 33333 11 111223344443333333332 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 418 IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 418 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.+-++..+.+|...|.+.+.+.+|...|+.+.+..| +...+..++.++.+.|+..+|.+..++..
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 111235555666666666666666666666666666 55666666666666666666666665554
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=7.5e-10 Score=98.84 Aligned_cols=249 Identities=13% Similarity=0.051 Sum_probs=169.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC
Q 009663 189 SGYTRVGDIKNAASLFDSMPDR----DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG 264 (529)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~ 264 (529)
.+....||.+.+-.++.+..++ +...+-+........|++..|..-+.++... -+-+.........+|.+.|
T Consensus 126 ~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~----~pr~~~vlrLa~r~y~~~g 201 (400)
T COG3071 126 EAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEM----TPRHPEVLRLALRAYIRLG 201 (400)
T ss_pred HHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh----CcCChHHHHHHHHHHHHhc
Confidence 3444445555555555544332 2223333444455555555555555555421 1223344445555555555
Q ss_pred CchHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhH
Q 009663 265 MLQLGKVIHGYVYRNGLDLDS-------FISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSEN 334 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 334 (529)
++.....++..+.+.|.-.+. .+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++
T Consensus 202 ~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~ 281 (400)
T COG3071 202 AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDE 281 (400)
T ss_pred cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHH
Confidence 555555555555555543332 245555555555555555556666665 3466677788888999999999
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 335 SICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 335 a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
|.++..+..+ .+..|+ ....-.+.+.++.+.-++..+...+.++.. +..+.+|...|.+.+.|.+|.+.|+
T Consensus 282 A~~~i~~~Lk---~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 282 AQEIIEDALK---RQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred HHHHHHHHHH---hccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999887 777776 223335677888888888888887765444 4788999999999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 415 GM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 415 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.. +..|+..+|+-+..++.+.|+..+|.++.++.+.
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 87 8899999999999999999999999999999886
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=6.5e-10 Score=108.43 Aligned_cols=424 Identities=11% Similarity=0.051 Sum_probs=235.6
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC----CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009663 31 QLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT----TPNTYLYTAMITAYASQPAHASSAFSLYRDMVR 106 (529)
Q Consensus 31 ~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 106 (529)
.++..+...|+.|+..+|..+|..||..| +.+.|- +|.-|. +-+...++.++.+..+. ++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A-nd~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA-NDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhccccc-ccccCCC--------
Confidence 46777888999999999999999999999 999998 887775 23445677777776666 6655443
Q ss_pred CCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHH-------hCCC-CchhH-------------HHHHHHHHHhcCCC
Q 009663 107 RGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVK-------SGFE-QYPVV-------------ETALVNSYSRSGND 165 (529)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~g~~-~~~~~-------------~~~l~~~~~~~g~~ 165 (529)
.|.+.||..+..+|...||+.....+-+++.. .|+. |.... -..++....-.| -
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg-l 154 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG-L 154 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH-H
Confidence 46667777788877777776542222221211 1211 00000 111222233334 4
Q ss_pred HHHHHHHHhhCCC--CChhhHHHHHHHHHh-cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhCCChhHHHHHHHHhhhc
Q 009663 166 IGIARKLFDEMSD--RNVVSWTAMISGYTR-VGDIKNAASLFDSMPD-RDVPAWNSVIAGCTQNGLFSDAISFFRRMGME 241 (529)
Q Consensus 166 ~~~A~~~~~~~~~--~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (529)
++.+.+++..++. .+. +...+++-+.. ...+++-..+.....+ +++.+|..++.+-...|+.+.|..++.+|...
T Consensus 155 waqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5555555544442 111 11111222221 2233344444444433 56666666666666666666676666666655
Q ss_pred ccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCC---------------------
Q 009663 242 VSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS--------------------- 300 (529)
Q Consensus 242 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------- 300 (529)
|++-+..-|-.++-+ .++...+..++.-|...|+.|+..|+...+..+..+|.
T Consensus 234 ---gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsa 307 (1088)
T KOG4318|consen 234 ---GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSA 307 (1088)
T ss_pred ---CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHH
Confidence 666666555555433 55666666666666666666666666554444333222
Q ss_pred -------------------------------------------------HHHHHHHHhhcCC-------CChhHHHHHHH
Q 009663 301 -------------------------------------------------LKEARRAFDRNSK-------KRLTSWNSMIN 324 (529)
Q Consensus 301 -------------------------------------------------~~~A~~~~~~~~~-------~~~~~~~~li~ 324 (529)
-++.+++-..+.. .++..|..++.
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 1111111111111 11112222222
Q ss_pred HHHHcC----------------------ChhHHHHHHHHHhhcccCCCCCCHH---------------------------
Q 009663 325 SFALHG----------------------QSENSICVFEEMMRCQDHNIRPDGV--------------------------- 355 (529)
Q Consensus 325 ~~~~~~----------------------~~~~a~~~~~~m~~~~~~~~~p~~~--------------------------- 355 (529)
-|.+.- +..+..++... ..||..
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~--------lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN--------LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH--------hCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 221110 00011111100 112211
Q ss_pred -HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHH
Q 009663 356 -TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMK-----IEPDEVVWGSLL 429 (529)
Q Consensus 356 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~ 429 (529)
.-+.++..|+..-+..++...-+..... -+ +..|..||+.++.....+.|..+.++.. +..|..-+..+.
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 0112222333333333333222222211 11 2567889999999999999999999883 233555677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEI---DPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYK 489 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 489 (529)
+.+.+.+....+..++.++.+. .|........+.......|+.+...++.+-+...|+.-
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8889999999999999998873 24345566666677788899999999999999888865
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=8e-11 Score=105.13 Aligned_cols=197 Identities=15% Similarity=0.095 Sum_probs=153.9
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLL 361 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~ 361 (529)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+ .. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT---LN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hC-CCCHHHHHHHH
Confidence 44566677777888888888888876543 2345777788888888999999999888865 22 23455677777
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 439 (529)
..+...|++++|...++++............+..+...+...|++++|...+++. ...| +...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8888889999999999988753221224556777888899999999999999887 4344 4667888888899999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 440 FAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 440 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+|...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999988888888888889999999999999998877543
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.9e-09 Score=98.45 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=131.2
Q ss_pred HHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 009663 325 SFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA 403 (529)
Q Consensus 325 ~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 403 (529)
.+.-.|+.-.|.+-|+..+. ....++. .|.-+...|...++.++.+..|++.. .+.| ++.+|..-.+.+.-.
T Consensus 335 F~fL~g~~~~a~~d~~~~I~---l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIK---LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhhcCCchhhhhhHHHHHh---cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHH
Confidence 34556899999999999976 3333322 27777778999999999999999987 5566 688998888999999
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 404 GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 404 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
+++++|..=|++. .+.| +...|..+..+..+.++++++...|++.++..|+.+.+|+..+.++..++++++|.+.|+.
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 9999999999998 6677 4667777777888899999999999999999999999999999999999999999999998
Q ss_pred HhhCCC
Q 009663 482 LKDRNA 487 (529)
Q Consensus 482 ~~~~~~ 487 (529)
.++...
T Consensus 488 ai~LE~ 493 (606)
T KOG0547|consen 488 AIELEP 493 (606)
T ss_pred HHhhcc
Confidence 876543
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.3e-08 Score=91.27 Aligned_cols=272 Identities=11% Similarity=0.014 Sum_probs=198.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH---HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHH
Q 009663 179 RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWN---SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVC 255 (529)
Q Consensus 179 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ 255 (529)
.|+.....+..++...|+.++|+..|++..--|+.+.. .-.-.+.+.|++++...+...+... .+-+...|..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~----~~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK----VKYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh----hhcchhhhhh
Confidence 46778888889999999999999999886654443322 2233456778888887777776522 1233333433
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCCh
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS--K-KRLTSWNSMINSFALHGQS 332 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~ 332 (529)
-+..+...++++.|+.+-++.++.+.. +...+-.-..++...|+.++|.-.|+... . .+..+|.-++.+|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 344455677888888888888776542 45556556677888899999988887643 3 4677999999999999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCHHHHHHHH-HHH-hCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 009663 333 ENSICVFEEMMRCQDHNIRPDGVTFISLL-NAC-THGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEA 409 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~~~p~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 409 (529)
.+|.-.-+... .-+.-+..+...+. ..| ....--++|.+++++.. .+.|+ ......+...+...|..+++
T Consensus 385 kEA~~~An~~~----~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 385 KEANALANWTI----RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHHHHHHHHHH----HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchH
Confidence 99988777654 23344555555442 222 23334578888888776 55775 55667788889999999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 410 LEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 410 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
..++++. ...||....+.|.+.+...+.+.+|...|..+++++|++..+...+
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9999987 7788999999999999999999999999999999999876665554
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=3.7e-08 Score=93.40 Aligned_cols=411 Identities=12% Similarity=0.049 Sum_probs=266.9
Q ss_pred hcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHH
Q 009663 57 LKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGT 133 (529)
Q Consensus 57 ~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (529)
..| +-++|........ ..+.+.|+.+.-.+... .++++|+..|......+ +.|...+.-+.-.-++.|+++..
T Consensus 53 ~lg-~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 53 CLG-KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD-KKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred ccc-chHHHHHHHHHHhccCcccchhHHHHHHHHhhh-hhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhH
Confidence 344 8888888877665 35678899887777767 99999999999999987 67777777776666788899988
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC-----CChhhHHHH------HHHHHhcCCHHHHHH
Q 009663 134 KMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD-----RNVVSWTAM------ISGYTRVGDIKNAAS 202 (529)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~-----~~~~~~~~l------l~~~~~~g~~~~A~~ 202 (529)
.....++.+.. +.....|..+..++.-.| +...|..++++..+ |+...|... .....+.|..+.|.+
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g-~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLG-EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 88888887753 234567888888888889 99999999887754 444444332 234567888899988
Q ss_pred HHhhCCCC--C-hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhh-ccC-CchHHHHHHHHHH
Q 009663 203 LFDSMPDR--D-VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIG-HTG-MLQLGKVIHGYVY 277 (529)
Q Consensus 203 ~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~ 277 (529)
.+...... | ...-..-...+.+.+++++|..++..+.. ..||...|...+..+. +.. .......+|....
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~-----rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE-----RNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh-----hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 88776543 2 22233455678899999999999999984 4788877776655443 233 3333335665554
Q ss_pred HhCCCCCccHHHHH-HHHHHhCCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHHcCChhHHHHHHHHHhhc-ccCC-----
Q 009663 278 RNGLDLDSFISNAL-IDMYGKCGSLKEARRAFDRNSKKRL-TSWNSMINSFALHGQSENSICVFEEMMRC-QDHN----- 349 (529)
Q Consensus 278 ~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~----- 349 (529)
+.-. ....-.-+ +.......-.+....++..+.+.++ ..+..+...|-.-...+-..++...+... ...|
T Consensus 282 ~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 282 EKYP--RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred hcCc--ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 4321 11111111 1111111122233334444444433 34555554443333222222222222110 0010
Q ss_pred -----CCCCHH--HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-C
Q 009663 350 -----IRPDGV--TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGM-KI-E 419 (529)
Q Consensus 350 -----~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~ 419 (529)
-+|... |+..++..+-..|+++.|..+++... +..|+ +..|..-.+.+...|++++|..++++. ++ .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 144443 45567788889999999999999998 55776 667777888999999999999999988 32 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CchhH--HHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN-------NGGYG--IMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
||...-..-.....+..+.++|.++..+..+.+-+ -.-.| .--+.+|.++|++.+|++=+..+.
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 55555546677778899999999999888775532 11122 223667888888888876655553
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=4.3e-10 Score=109.66 Aligned_cols=334 Identities=13% Similarity=0.098 Sum_probs=166.1
Q ss_pred HHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCC
Q 009663 100 LYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR 179 (529)
Q Consensus 100 ~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~ 179 (529)
++-.+...|+ .|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++......+ +.+.+. .|
T Consensus 12 fla~~e~~gi-~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-------ep 81 (1088)
T KOG4318|consen 12 FLALHEISGI-LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-------EP 81 (1088)
T ss_pred HHHHHHHhcC-CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-------CC
Confidence 4444555555 555555555555555555555555 5555554444444555555555555555 444333 34
Q ss_pred ChhhHHHHHHHHHhcCCHHH-----------------------HHHHHhhCCC-C-ChhhHHHHHHHHHhCCChhHHHHH
Q 009663 180 NVVSWTAMISGYTRVGDIKN-----------------------AASLFDSMPD-R-DVPAWNSVIAGCTQNGLFSDAISF 234 (529)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~-----------------------A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~ 234 (529)
.+.+|+.+..+|...||+.. -..++-.+.- | ....-...+.-..-.|.++.++++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555433 2222222110 0 111112234444556667777777
Q ss_pred HHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 009663 235 FRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK 314 (529)
Q Consensus 235 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 314 (529)
+..+... ....|... .++-+.. +....+++........-.|++.+|...+++-...|+.+.|..++.+|.+.
T Consensus 162 l~~~Pvs--a~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 162 LAKVPVS--AWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HhhCCcc--cccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 7666422 11112211 2332222 22333444443332222467777777777777788888888888777766
Q ss_pred Chh-----HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC
Q 009663 315 RLT-----SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ 389 (529)
Q Consensus 315 ~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 389 (529)
+.. .|-.++. .++...++.+++-|.+ .|+.|+..|+...+..+...|....+.. | .+.
T Consensus 234 gfpir~HyFwpLl~g----~~~~q~~e~vlrgmqe---~gv~p~seT~adyvip~l~N~~t~~~~e---------~-sq~ 296 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG----INAAQVFEFVLRGMQE---KGVQPGSETQADYVIPQLSNGQTKYGEE---------G-SQL 296 (1088)
T ss_pred CCCcccccchhhhhc----CccchHHHHHHHHHHH---hcCCCCcchhHHHHHhhhcchhhhhccc---------c-cch
Confidence 433 2333322 6677777777777777 7888888877777666666443211111 1 122
Q ss_pred h-----hHHHHHHHHHHhcCChHHH-----HHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cC
Q 009663 390 I-----EHYGCLVDLLGRAGRFEEA-----LEVVKGM---KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE----ID 452 (529)
Q Consensus 390 ~-----~~~~~l~~~~~~~g~~~~A-----~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 452 (529)
. ..+..+..+.....+.+.- ...+.+- ++.....+|... .-...+|..++.+++...+.. +.
T Consensus 297 ~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 297 AHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccC
Confidence 2 2222222221111111111 1111111 333333344332 233447887888887777754 44
Q ss_pred CCCchhHHHHHHHHHhc
Q 009663 453 PNNGGYGIMLANIYGEL 469 (529)
Q Consensus 453 p~~~~~~~~l~~~~~~~ 469 (529)
|++...+..+..-|.+.
T Consensus 376 ~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRR 392 (1088)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 55666666666666554
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=3.7e-10 Score=108.04 Aligned_cols=232 Identities=17% Similarity=0.185 Sum_probs=157.2
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHh-----CC-CCCcc-HHHHHHHHHHhCCCHHHHHHHHhhcCC--------CC-
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRN-----GL-DLDSF-ISNALIDMYGKCGSLKEARRAFDRNSK--------KR- 315 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~- 315 (529)
++..+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++.. .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444455555555555555555554433 11 11111 223355667777777777777765431 11
Q ss_pred --hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC--C-CCCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcC--CC
Q 009663 316 --LTSWNSMINSFALHGQSENSICVFEEMMRCQDH--N-IRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYR--IE 387 (529)
Q Consensus 316 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 387 (529)
..+++.|..+|.+.|++++|..++++..++.+. + ..|... -++.+...|+..+++++|..+++...+.+. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 126777777778888887777777766553222 2 223332 355667778889999999999988765432 12
Q ss_pred C----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 009663 388 P----QIEHYGCLVDLLGRAGRFEEALEVVKGM---------KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE--- 450 (529)
Q Consensus 388 p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 450 (529)
+ -..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2468899999999999999999999877 1122 245678888899999999999999988876
Q ss_pred -cCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 451 -IDPN---NGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 451 -~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.+|+ ...+|..|+.+|...|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 45678889999999999999999998886
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=7.9e-09 Score=90.70 Aligned_cols=178 Identities=8% Similarity=-0.011 Sum_probs=102.3
Q ss_pred HHHHhhcCCChhHHHHHhhcCCCC---ChhHHHHHHHH-HhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccC
Q 009663 52 VRFCTLKLSNLTYARFIFDHLTTP---NTYLYTAMITA-YASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDV 127 (529)
Q Consensus 52 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 127 (529)
+.-+.... ++..|..+++.-..- ....-+.-|.- +.+. |++++|+..|..+.... .++...+..+.-+..-.
T Consensus 29 Ledfls~r-DytGAislLefk~~~~~EEE~~~~lWia~C~fhL-gdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNR-DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL-GDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcc-cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh-ccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHH
Confidence 44455555 888888888765421 11233333333 3344 88888888888887765 56666666666666666
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 009663 128 LESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSM 207 (529)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 207 (529)
|.+.+|..+-... +.++..-..++....+.| +-++-..+-+.+.+.. +---++....--.-.+.+|++++.++
T Consensus 105 g~Y~eA~~~~~ka-----~k~pL~~RLlfhlahkln-dEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 105 GQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLN-DEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhC-cHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777665433 222233333445555556 6555555444443321 22223333333344678888888887
Q ss_pred CCCCh--hhHHH-HHHHHHhCCChhHHHHHHHHhhh
Q 009663 208 PDRDV--PAWNS-VIAGCTQNGLFSDAISFFRRMGM 240 (529)
Q Consensus 208 ~~~~~--~~~~~-li~~~~~~g~~~~A~~~~~~m~~ 240 (529)
...+. ...|. +.-+|.+..-++-+.+++.--.+
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 65433 33333 34567777777777777776653
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.4e-10 Score=100.25 Aligned_cols=231 Identities=11% Similarity=0.002 Sum_probs=189.4
Q ss_pred CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhHHHHHHHH
Q 009663 249 NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--K-RLTSWNSMINS 325 (529)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 325 (529)
|...-+.+..+|.+.|.+.+|...++..++.. |-+.||..|..+|.+..+...|+.+|.+..+ | |+....-+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 44445677888899999999999998887764 4566788888999999999999999987654 3 34444556788
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGR 405 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (529)
+...++.++|.++|+...+ --+.+.....++...|.-.++++-|..+|+++.+- |+ .++..|..+.-+|.-.++
T Consensus 300 ~eam~~~~~a~~lYk~vlk----~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK----LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh----cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcc
Confidence 8888999999999999864 12234455666677788889999999999999865 64 467889999999999999
Q ss_pred hHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 406 FEEALEVVKGM---KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 406 ~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
+|-++.-|++. .-.|+ ..+|..+.......|++..|.+.|+-++..+|++...++.|+..-.+.|+.++|..++.
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 99999999887 22343 67899998888899999999999999999999999999999999999999999999999
Q ss_pred HHhhCCC
Q 009663 481 MLKDRNA 487 (529)
Q Consensus 481 ~~~~~~~ 487 (529)
...+...
T Consensus 454 ~A~s~~P 460 (478)
T KOG1129|consen 454 AAKSVMP 460 (478)
T ss_pred HhhhhCc
Confidence 8877654
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=2.9e-08 Score=95.98 Aligned_cols=424 Identities=13% Similarity=0.056 Sum_probs=267.9
Q ss_pred hCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCC---CChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCC-Cc
Q 009663 39 LGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTT---PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQP-NQ 114 (529)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~ 114 (529)
..+.-|+.+|..|.-+..+.| +++.+-+.|++..+ .....|+.+-..+... |....|+.+++.-....- .| |.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saa-g~~s~Av~ll~~~~~~~~-~ps~~ 393 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAA-GSDSKAVNLLRESLKKSE-QPSDI 393 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh-ccchHHHHHHHhhccccc-CCCcc
Confidence 345678899999999999999 99999999998763 3345688787777777 888999999988766542 34 34
Q ss_pred chHHHHHHhCc-cCCCchHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcCC----------CHHHHHHHHhhCCC-
Q 009663 115 FIYPHVLKSCP-DVLESRGTKMVHTQIVKS--GF--EQYPVVETALVNSYSRSGN----------DIGIARKLFDEMSD- 178 (529)
Q Consensus 115 ~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~~g~----------~~~~A~~~~~~~~~- 178 (529)
..+-..-+.|. +.+..+++..+..+++.. +. ......|..+.-+|...-+ ...++.+.+++..+
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 44444444454 557788888887777762 11 1223344444444433210 23456666666654
Q ss_pred --CChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHH
Q 009663 179 --RNVVSWTAMISGYTRVGDIKNAASLFDSMP----DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT 252 (529)
Q Consensus 179 --~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~ 252 (529)
.|+.+...+.--|+..++++.|.+..++.. ..++..|..+.-.+...+++.+|+.+.+....+ ...|...
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E----~~~N~~l 549 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE----FGDNHVL 549 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----hhhhhhh
Confidence 233333333344666778888887776643 346778888888888888888888888877643 1111111
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---C--CC-hhHHHHHHHHH
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---K--KR-LTSWNSMINSF 326 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~--~~-~~~~~~li~~~ 326 (529)
...-+..-...++.+++......+...--. .. .....++-....+....+. . .+ +.++..+....
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~--~~-------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEA--EY-------GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHh--hh-------hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 122222223356666665555544432100 00 0001111222223332221 0 11 12333332222
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCC--C------HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRP--D------GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLV 397 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 397 (529)
...+....-... +.. ..+.| + ...|......+.+.+..++|...+.+.. ++.| ....|....
T Consensus 621 a~~~~~~~se~~---Lp~---s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G 691 (799)
T KOG4162|consen 621 ASQLKSAGSELK---LPS---STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRG 691 (799)
T ss_pred Hhhhhhcccccc---cCc---ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhh
Confidence 211111000000 111 22222 2 1234455667888899999998888886 4445 577788888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEF--AVKKLIEIDPNNGGYGIMLANIYGELGKWD 473 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 473 (529)
..+...|.+++|.+.|... .+.|+ +.+..++...+.+.|+..-|.. ++..+++.+|.++.+|..++..+.+.|+.+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 8899999999999999887 67775 6788899999999999888888 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 009663 474 EVRKVRKMLKDRNA 487 (529)
Q Consensus 474 ~a~~~~~~~~~~~~ 487 (529)
.|.+.|....+-..
T Consensus 772 ~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 772 QAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998876654
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.9e-09 Score=97.67 Aligned_cols=279 Identities=11% Similarity=0.023 Sum_probs=187.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHH
Q 009663 180 NVVSWTAMISGYTRVGDIKNAASLFDSMPDRDV---PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCA 256 (529)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~l 256 (529)
++.....-..-+...+++.+..++++.+.+.|+ ..+-.-|.++...|+..+-.-+=.++.+. .+....+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~----yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL----YPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh----CCCCCcchhhH
Confidence 444444455555666666776666666654332 33444455666667666666555555532 33345566666
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChh
Q 009663 257 LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KR-LTSWNSMINSFALHGQSE 333 (529)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~ 333 (529)
.--|...|+.++|+++|.+....+.. -...|-.+.+.|+-.|.-+.|...|....+ ++ -..+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 66666667777777777766654432 234677777888888888888877754332 11 112333445577788889
Q ss_pred HHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc-CC---CC-ChhHHHHHHHHHHhcCChH
Q 009663 334 NSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTY-RI---EP-QIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~ 407 (529)
.|.+.|.+. .++-| |+...+-+.-.....+.+.+|..+|+.....- .+ .+ -..+++.|..+|.+.+.++
T Consensus 398 LAe~Ff~~A-----~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 398 LAEKFFKQA-----LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred HHHHHHHHH-----HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 999999888 44555 44555555555556788899999988776210 11 11 2346788899999999999
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 408 EALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 408 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
+|+..++.. .. +.+..++.++.-.+...|+++.|++.|.+++.+.|++..+-..|..+...
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999987 33 44788888999999999999999999999999999887777777665543
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=2.5e-07 Score=87.78 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=108.0
Q ss_pred CChhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHh---CCCcHHHHHHHHHHhHHhcCCCCChh--HHHHHHHHHHhc
Q 009663 330 GQSENSICVFEEMMRCQDHNIRPDG-VTFISLLNACT---HGGLVEQGRAYFKLMTKTYRIEPQIE--HYGCLVDLLGRA 403 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~ 403 (529)
.-++++.++|++-.. .-..|+. ..|+..+.-+. ....++.|..+|++..+ |.+|... .|......=.+.
T Consensus 525 ~yfeesFk~YErgI~---LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 525 KYFEESFKAYERGIS---LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HHHHHHHHHHHcCCc---cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHh
Confidence 334555555554432 2223443 23444433332 23568999999999986 6666422 233333333456
Q ss_pred CChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch--hHHHHHHHHHhcCCHHHHHH
Q 009663 404 GRFEEALEVVKGM--KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG--YGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 404 g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~ 477 (529)
|-...|+.++++. ++++. ...|+..|.--...--+.....+|+++++.-|++.. .....+..-.+.|..+.|..
T Consensus 600 GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARa 679 (835)
T KOG2047|consen 600 GLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARA 679 (835)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 8888999999998 44443 457888777655555566778899999988775332 22334455568899999999
Q ss_pred HHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHH
Q 009663 478 VRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDAL 522 (529)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (529)
++.--.+-.-.....-.| + +|-.-..+||+-+.+-++|
T Consensus 680 Iya~~sq~~dPr~~~~fW---~----twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 680 IYAHGSQICDPRVTTEFW---D----TWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHhhhhcCCCcCChHHH---H----HHHHHHHhcCCHHHHHHHH
Confidence 987665544333333344 2 4455556788844444443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=2.4e-09 Score=107.56 Aligned_cols=258 Identities=12% Similarity=0.031 Sum_probs=183.7
Q ss_pred ChhhHHHHHHHHHh-----CCChhHHHHHHHHhhhcccCCCCCCHH-HHHHHHHHhh---------ccCCchHHHHHHHH
Q 009663 211 DVPAWNSVIAGCTQ-----NGLFSDAISFFRRMGMEVSDNIRPNQV-TLVCALSAIG---------HTGMLQLGKVIHGY 275 (529)
Q Consensus 211 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~ 275 (529)
+...|...+.+-.. .+.+++|+.+|++.. ...|+.. .+..+..++. ..+++++|...+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al-----~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV-----NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 44555555554322 234679999999988 4567544 4444443332 23457899999999
Q ss_pred HHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC
Q 009663 276 VYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP 352 (529)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p 352 (529)
+.+.++. +..++..+..++...|++++|...|++..+. +...+..+...+...|++++|+..++++.+ ..|
T Consensus 330 Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~-----l~P 403 (553)
T PRK12370 330 ATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK-----LDP 403 (553)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCC
Confidence 9988754 6677888888999999999999999986543 455788889999999999999999999976 344
Q ss_pred CHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHH
Q 009663 353 DGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEV-VWGSL 428 (529)
Q Consensus 353 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l 428 (529)
+.. .+..++..+...|++++|...++++.+. ..| ++..+..+..++...|+.++|...++++ ...|+.. ..+.+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 432 2333444466679999999999998754 135 4556778888999999999999999988 4455544 34455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIE---IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
...+...| +.|...++++.+ ..|.++.. +...|.-.|+-+.+... +++.+.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 55566666 477777777766 33434333 55567777888877777 88877754
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=3.4e-09 Score=94.54 Aligned_cols=193 Identities=16% Similarity=0.133 Sum_probs=107.3
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALH 329 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 329 (529)
+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|.+.+++..+ .+...+..+...+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 33334444444444444444444443321 1233444445555555555555555544332 2233455555566666
Q ss_pred CChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 009663 330 GQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 407 (529)
|++++|...+++... ....| ....+..+..++...|++++|...+++..+. .| +...+..+...+...|+++
T Consensus 113 g~~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 113 GKYEQAMQQFEQAIE---DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred ccHHHHHHHHHHHHh---ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHH
Confidence 666666666666654 22112 2334555566666777777777777776643 33 3556666777777777777
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 408 EALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 408 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
+|...+++. .. +.+...+..+...+...|+.++|..+.+.+....
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777777765 22 2345555566666677777777777777665543
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=1.3e-09 Score=109.49 Aligned_cols=212 Identities=9% Similarity=-0.014 Sum_probs=164.4
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHH---------hCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCC
Q 009663 264 GMLQLGKVIHGYVYRNGLDLDSFISNALIDMYG---------KCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQ 331 (529)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 331 (529)
++.++|..+++++.+..+. +...+..+..+|. ..+++++|...+++..+. +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4567899999999887653 3455666665544 234588999999886643 55688888889999999
Q ss_pred hhHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEA 409 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 409 (529)
+++|+..|+++.+ ..|+ ...+..+...+...|++++|...++++.+ +.|+ ...+..++..+...|++++|
T Consensus 354 ~~~A~~~~~~Al~-----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 354 YIVGSLLFKQANL-----LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHH
Confidence 9999999999975 3454 55677788889999999999999999984 4664 33334445557778999999
Q ss_pred HHHHHhC-C-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 410 LEVVKGM-K-IEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 410 ~~~~~~~-~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
...+++. . ..| ++..+..+..++...|++++|...++++....|.+......++..|...| ++|...++.+.+..
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 9999887 2 245 45556777888889999999999999998888888888888888888888 58888888876543
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=2.8e-09 Score=102.12 Aligned_cols=237 Identities=12% Similarity=0.094 Sum_probs=174.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcc--cCC-CCCCHHHH-HHHHHHhhccCCchHHHHHHHHHHHh-----CCC-C
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEV--SDN-IRPNQVTL-VCALSAIGHTGMLQLGKVIHGYVYRN-----GLD-L 283 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~ 283 (529)
+...+...|...|+++.|+.+++...... ..| ..|...+. +.+...|...+++.+|..+|+.+... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 45558888999999999999888765321 011 23444433 33666788899999999999988753 221 1
Q ss_pred -CccHHHHHHHHHHhCCCHHHHHHHHhhcCC----------CChh-HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC
Q 009663 284 -DSFISNALIDMYGKCGSLKEARRAFDRNSK----------KRLT-SWNSMINSFALHGQSENSICVFEEMMRCQDHNIR 351 (529)
Q Consensus 284 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 351 (529)
-..+++.|..+|.+.|++++|...+++..+ +.+. .++.++..++..+++++|..++++..+....-..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 233567778889999999998888765321 1222 5677788899999999999999987664333333
Q ss_pred CCH----HHHHHHHHHHhCCCcHHHHHHHHHHhHHhc----C-CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-----
Q 009663 352 PDG----VTFISLLNACTHGGLVEQGRAYFKLMTKTY----R-IEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM----- 416 (529)
Q Consensus 352 p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 416 (529)
++. .+++.+...|...|++++|..+++++.+.. + ..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 433 568899999999999999999999987642 1 122 2557788999999999999999988876
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 417 ---KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 417 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
+..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23344 46788999999999999999999998875
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=8.3e-07 Score=83.64 Aligned_cols=437 Identities=10% Similarity=0.053 Sum_probs=250.5
Q ss_pred HHHHHHHHHccCcchHH---HHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHH--HHHH-
Q 009663 14 QQVLAILERCNHINHLK---QLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAM--ITAY- 87 (529)
Q Consensus 14 ~~~~~~l~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--l~~~- 87 (529)
+.+..-+++.++-.+.+ +.-..+...+ +-|...+..=+-+....+ .+++|+++.+.-.. ..+++.. =.+|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~-ky~~ALk~ikk~~~--~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLD-KYEDALKLIKKNGA--LLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhh-HHHHHHHHHHhcch--hhhcchhhHHHHHH
Confidence 45555666665555544 4444444444 334444444555556666 89999987766431 1122222 2333
Q ss_pred -hcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCC
Q 009663 88 -ASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQ-YPVVETALVNSYSRSGND 165 (529)
Q Consensus 88 -~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~ 165 (529)
.+. +..++|+..++ |.-+.|..+...-...|.+.|++++|..+|+.+.+.+.+. +...-..++.+-.
T Consensus 89 ~Yrl-nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----- 157 (652)
T KOG2376|consen 89 EYRL-NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----- 157 (652)
T ss_pred HHHc-ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----
Confidence 356 88999999988 3213344466666777899999999999999998876421 2222222222211
Q ss_pred HHHHHHHHhhCCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCC--------CCC-----hh-----hHHHHHHHHHh
Q 009663 166 IGIARKLFDEMSDRNVVSWTAMI---SGYTRVGDIKNAASLFDSMP--------DRD-----VP-----AWNSVIAGCTQ 224 (529)
Q Consensus 166 ~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~ 224 (529)
.-.+ .+.+........+|..+- -.+...|++.+|+++++... +.| +. .---|...+..
T Consensus 158 ~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 158 ALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1111 134444442233444443 45667899999999998872 111 11 12234456778
Q ss_pred CCChhHHHHHHHHhhhcccCCCCCCHHH----HHHHHHHhhccCCchH--HHHHHHHHHHhC-----------CCCCccH
Q 009663 225 NGLFSDAISFFRRMGMEVSDNIRPNQVT----LVCALSAIGHTGMLQL--GKVIHGYVYRNG-----------LDLDSFI 287 (529)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~~--a~~~~~~~~~~~-----------~~~~~~~ 287 (529)
.|+.++|.+++....+. ..+|... -|.++. .....++-. .+..++...... -.-....
T Consensus 237 ~Gqt~ea~~iy~~~i~~----~~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~ 311 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKR----NPADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYR 311 (652)
T ss_pred hcchHHHHHHHHHHHHh----cCCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 89999999999998865 3444422 223332 222222211 111111111100 0001111
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCC-hhHHHHHHHHH--HHcCChhHHHHHHHHHhhcccCCCCCC--HHHHHHHHH
Q 009663 288 SNALIDMYGKCGSLKEARRAFDRNSKKR-LTSWNSMINSF--ALHGQSENSICVFEEMMRCQDHNIRPD--GVTFISLLN 362 (529)
Q Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~l~~ 362 (529)
-+.++..| .+..+.+.++.......- ...+.+++... ++.....++.+++....+ -.|. .......+.
T Consensus 312 N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-----~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 312 NNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD-----GHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-----cCCchhHHHHHHHHH
Confidence 12233333 345566666666655433 23444444333 223357788888887743 2333 344455666
Q ss_pred HHhCCCcHHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHH
Q 009663 363 ACTHGGLVEQGRAYFK--------LMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--------KIEPD-EVVW 425 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~ 425 (529)
.....|+++.|.+++. .+.+. + ..+.+...+...|.+.++.+.|..++.+. ...+. ..++
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~-~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEA-K--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhh-c--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 7788999999999999 44422 3 33455666777888887766666655544 11221 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.-....-.+.|+.++|...++++.+.+|++..+...++.+|.+. +.+.|..+-+.+
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 44445556789999999999999999999999999999888765 566666654433
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=4.3e-10 Score=97.38 Aligned_cols=232 Identities=9% Similarity=0.006 Sum_probs=190.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 009663 216 NSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY 295 (529)
Q Consensus 216 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (529)
+.+.++|.+.|-+.+|.+.|+.... -.|-..||..+-.+|.+..++..|+.++.+-++.-+ .++.........+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-----q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-----QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-----cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHH
Confidence 4678899999999999999998874 477888999999999999999999999988877632 2444445567888
Q ss_pred HhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHH
Q 009663 296 GKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQ 372 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 372 (529)
...++.++|.++|+.+.+. ++....++...|...++++.|+.+|+++.+ .|+. +...|+.+.-+|.-.++++-
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq---mG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ---MGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH---hcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8889999999999987654 455666777888899999999999999998 6764 45678888888999999999
Q ss_pred HHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 373 GRAYFKLMTKTYRIEPQ--IEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 373 a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
+..-|++.... --.|+ ..+|-.|.......|++.-|.+.|+-. ........++.|...-.+.|++++|..++..+
T Consensus 377 ~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99999998754 33343 568888888889999999999999877 32335788999988889999999999999999
Q ss_pred HhcCCCCchh
Q 009663 449 IEIDPNNGGY 458 (529)
Q Consensus 449 ~~~~p~~~~~ 458 (529)
....|+-...
T Consensus 456 ~s~~P~m~E~ 465 (478)
T KOG1129|consen 456 KSVMPDMAEV 465 (478)
T ss_pred hhhCcccccc
Confidence 9999864433
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=4.7e-08 Score=94.62 Aligned_cols=425 Identities=12% Similarity=0.048 Sum_probs=271.5
Q ss_pred cccccHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC--C--C-ChhHHHH
Q 009663 8 LNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT--T--P-NTYLYTA 82 (529)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~--~-~~~~~~~ 82 (529)
+.+...++|...+.+||....+.+.+++....- .-....+..+-..|+..| .-..|..+++.-. + | +...+-.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHHHH
Confidence 456667889999999999999988888776543 335567777777888888 8888999987764 2 3 3444444
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHC--CC-CCCCcchHHHHHHhCccC-----------CCchHHHHHHHHHHHhCCC-C
Q 009663 83 MITAYASQPAHASSAFSLYRDMVRR--GQ-PQPNQFIYPHVLKSCPDV-----------LESRGTKMVHTQIVKSGFE-Q 147 (529)
Q Consensus 83 ll~~~~~~~~~~~~a~~~~~~m~~~--~~-~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~g~~-~ 147 (529)
.-..|.++.+..+++++.-.+.... +. .......|..+.-+|... ....++.+.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4455655557777777777766652 11 022334444444444321 1344567888888877643 3
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH---HHHH
Q 009663 148 YPVVETALVNSYSRSGNDIGIARKLFDEMSD----RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWN---SVIA 220 (529)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~ 220 (529)
++..|. .--|+..+ +++.|.+..++... .+...|..+.-.+...+++.+|+.+.+...+.-..-|+ .-+.
T Consensus 479 ~~if~l--alq~A~~R-~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFYL--ALQYAEQR-QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred hHHHHH--HHHHHHHH-hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 333343 33455666 89999998888765 47789999999999999999999998876543222222 2223
Q ss_pred HHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHH--HhCCCCCccHHHHHHHHHHhC
Q 009663 221 GCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVY--RNGLDLDSFISNALIDMYGKC 298 (529)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 298 (529)
.-..-++.++++.....+..- .....+-..+ +. .| ...+....+. .....-...++..+.......
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~-we~~~~~q~~----~~----~g---~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLAL-WEAEYGVQQT----LD----EG---KLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHH-HHhhhhHhhh----hh----hh---hhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 334467777777776666531 0011111001 00 01 1111111110 001111222333333222211
Q ss_pred C---CHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCC
Q 009663 299 G---SLKEARRAFDRNSKKR------LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGG 368 (529)
Q Consensus 299 g---~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~ 368 (529)
+ ..+..+..+.....++ ...|......+.+.+..++|...+.+.. ++.| ....|......+...|
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~-----~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS-----KIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-----hcchhhHHHHHHhhHHHHHHH
Confidence 1 1111112222222222 1256677788899999999999888884 3334 5566776667788889
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALE--VVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
..++|.+.|.... -+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|..+...+.+.|+.++|.+
T Consensus 699 ~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 699 QLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999999999887 56784 7889999999999998777776 88777 6666 68999999999999999999999
Q ss_pred HHHHHHhcCCCCch
Q 009663 444 AVKKLIEIDPNNGG 457 (529)
Q Consensus 444 ~~~~~~~~~p~~~~ 457 (529)
+|..+.++.+.+|.
T Consensus 776 cf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 776 CFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhccCCCc
Confidence 99999998876664
No 72
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.19 E-value=9e-08 Score=83.87 Aligned_cols=300 Identities=17% Similarity=0.123 Sum_probs=202.0
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCCCCChhhHHHH---HHH
Q 009663 148 YPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMI---SGYTRVGDIKNAASLFDSMPDRDVPAWNSV---IAG 221 (529)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~ 221 (529)
++.-...+...+...| ++..|+.-|....+-|+..|.++. ..|...|+...|+.-|.+..+-.+..+..- ...
T Consensus 37 dvekhlElGk~lla~~-Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 37 DVEKHLELGKELLARG-QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 3344445566666777 777787777777776666666554 346666776666666666554322222222 235
Q ss_pred HHhCCChhHHHHHHHHhhhcccCCCCCCH----------------HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCc
Q 009663 222 CTQNGLFSDAISFFRRMGMEVSDNIRPNQ----------------VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDS 285 (529)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 285 (529)
+.+.|.+++|..=|+.+.+. .|+. ......+..+...|+...|+.....+++..+ -+.
T Consensus 116 llK~Gele~A~~DF~~vl~~-----~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda 189 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQH-----EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDA 189 (504)
T ss_pred hhhcccHHHHHHHHHHHHhc-----CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chh
Confidence 67788888888888877744 3311 1122334456677888888888888887654 477
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhc---CCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHH----H
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRN---SKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTF----I 358 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~----~ 358 (529)
..+..-..+|...|++..|+.=++.. ...+..++.-+-..+...|+.+.++...++.. .+.||.... .
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL-----KldpdHK~Cf~~YK 264 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL-----KLDPDHKLCFPFYK 264 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH-----ccCcchhhHHHHHH
Confidence 77888888999999999888766543 44566677777777888888888888888774 466665321 1
Q ss_pred HH---------HHHHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-H
Q 009663 359 SL---------LNACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-E 422 (529)
Q Consensus 359 ~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~ 422 (529)
.+ +......++|.++....+...+. .|. ...+..+..++...|++.+|++...+. .+.|| .
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence 11 11233456777777777776643 443 234556677778888888998888887 66675 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
.++.--..+|.-...++.|+.-|+++.+.++++..+-..+
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 7777778888888889999999999999888776655544
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=4e-11 Score=76.94 Aligned_cols=50 Identities=22% Similarity=0.591 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCcc
Q 009663 75 PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPD 126 (529)
Q Consensus 75 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 126 (529)
||+.+||++|.++++. |++++|.++|++|.+.|+ +||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~-~~~~~a~~l~~~M~~~g~-~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKA-GKFEEALKLFKEMKKRGI-KPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHC-cCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHcC
Confidence 6788888888888888 888888888888888887 8888888888887764
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=9.9e-11 Score=75.11 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=36.7
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC
Q 009663 314 KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH 366 (529)
Q Consensus 314 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~ 366 (529)
||+.+|+++|.+|++.|++++|.++|++|.+ .|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~---~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK---RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHcC
Confidence 4666777777777777777777777777776 7777777777777777654
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=6e-07 Score=85.46 Aligned_cols=375 Identities=12% Similarity=0.074 Sum_probs=246.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARK 171 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~ 171 (529)
|+.++|.+....-.+.+ ..+...|..+.-.+....++++|...+..+...+ +.+...+.-+.-.=++.| +++....
T Consensus 55 g~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmR-d~~~~~~ 130 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMR-DYEGYLE 130 (700)
T ss_pred cchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHH-hhhhHHH
Confidence 88899999888887765 5677788888888888889999999999888865 345666766666666777 8887777
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHH------HHHHHHhCCChhHHHHHHHH
Q 009663 172 LFDEMSD--R-NVVSWTAMISGYTRVGDIKNAASLFDSMPD-----RDVPAWNS------VIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 172 ~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~~~ 237 (529)
...+..+ | ....|..+..++.-.|+...|..+++.... ++...|.. ......+.|.+++|++.+..
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 7777665 2 345788888888888999988888877542 34433322 22455677888888888876
Q ss_pred hhhcccCCCCCCHHHH-HHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHH-HHHHHHHHhCCCHHHHH-HHHhhcCCC
Q 009663 238 MGMEVSDNIRPNQVTL-VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFIS-NALIDMYGKCGSLKEAR-RAFDRNSKK 314 (529)
Q Consensus 238 m~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~-~~~~~~~~~ 314 (529)
-... ..|...+ .+-...+.+.+++++|..++..++..+ ||...| ..+..++.+-.+.-++. .+|....+.
T Consensus 211 ~e~~-----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 211 NEKQ-----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred hhhH-----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 5422 2233322 344556788899999999999988875 344444 44445554333333333 555543321
Q ss_pred ---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc-----C-
Q 009663 315 ---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTY-----R- 385 (529)
Q Consensus 315 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~- 385 (529)
....-..=+....-..-.+..-.++..+.+ .|+++- |..+...+-.....+ +++++...+ |
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~---Kg~p~v---f~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS---KGVPSV---FKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGT 353 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhh---cCCCch---hhhhHHHHhchhHhH----HHHHHHHHHHhhcccc
Confidence 100000001111112223444556666666 777663 333333332222111 222222110 1
Q ss_pred -----------CCCChh--HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 386 -----------IEPQIE--HYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE-VVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 386 -----------~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
-+|++. ++-.++..|-+.|+++.|+.+++.. +-.|+. ..|..-...+...|++++|..+++++.+
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 144444 3456788899999999999999988 656764 4555556778899999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 451 IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 451 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
++-.|..+-...+.-..++++.++|.++....-+.|.
T Consensus 434 lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 434 LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9866777777888888999999999999999987775
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=4.5e-09 Score=86.97 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=93.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHH
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSKKRL---TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNAC 364 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~ 364 (529)
..|.-.|...|+...|..-+++..+.|+ .+|..+...|.+.|+.+.|.+-|++... +.| +....|....-+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-----l~p~~GdVLNNYG~FL 113 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS-----LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh-----cCCCccchhhhhhHHH
Confidence 3344555555555555555555443332 2555555555555555555555555532 223 223344444444
Q ss_pred hCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 009663 365 THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAE 442 (529)
Q Consensus 365 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 442 (529)
|..|.+++|...|++............+|..+.-+..+.|+.+.|...|++. ...| .+.+...+.......|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 5555555555555555543222122445555555555555555555555554 2233 2334444455555555555555
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 443 FAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
..+++.....+-+.......+.+-...|+.+.+-++=.++
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555555544334444444444445555555555444444
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=3.4e-09 Score=97.31 Aligned_cols=232 Identities=12% Similarity=-0.054 Sum_probs=134.0
Q ss_pred HHHhCCChhHHHHHHHHhhhcccCCCCCC--HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC
Q 009663 221 GCTQNGLFSDAISFFRRMGMEVSDNIRPN--QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC 298 (529)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (529)
.....+..+.++..+.++... ....|+ ...|..+...+...|+.++|...|++..+..+. +...|+.+...+...
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~--~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILAS--RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQA 111 (296)
T ss_pred ccCCchHHHHHHHHHHHHHcc--ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHC
Confidence 344455666777777777632 122232 234555666677778888888888777776543 566777777778888
Q ss_pred CCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHH
Q 009663 299 GSLKEARRAFDRNSK--K-RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRA 375 (529)
Q Consensus 299 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 375 (529)
|++++|...|++..+ | +..+|..+..++...|++++|++.|++..+ ..|+..........+...++.++|..
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~-----~~P~~~~~~~~~~l~~~~~~~~~A~~ 186 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ-----DDPNDPYRALWLYLAESKLDPKQAKE 186 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHccCCHHHHHH
Confidence 888888877776543 2 345677777777777888888888877754 33433222222222344567777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009663 376 YFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEE--ALEVVKGM-KI----EP-DEVVWGSLLNGCKIYGRTDFAEFAVKK 447 (529)
Q Consensus 376 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 447 (529)
.+++.... ..|+... ..+. ....|+..+ +.+.+.+. .. .| ....|..+...+...|++++|+..|++
T Consensus 187 ~l~~~~~~--~~~~~~~-~~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 187 NLKQRYEK--LDKEQWG-WNIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHhh--CCccccH-HHHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77655432 2333222 1222 223444433 22222221 11 11 234677777777778888888888888
Q ss_pred HHhcCC-CCchhHHHHHHH
Q 009663 448 LIEIDP-NNGGYGIMLANI 465 (529)
Q Consensus 448 ~~~~~p-~~~~~~~~l~~~ 465 (529)
+.+.+| +.......++..
T Consensus 262 Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 262 ALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHhCCchHHHHHHHHHHH
Confidence 877775 333344444433
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=2.2e-08 Score=91.95 Aligned_cols=211 Identities=15% Similarity=0.114 Sum_probs=123.1
Q ss_pred CchHHHHHHHHHHHhCC-CC--CccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHH
Q 009663 265 MLQLGKVIHGYVYRNGL-DL--DSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICV 338 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 338 (529)
..+.++.-+.+++.... .| ....|..+...|...|++++|...|++..+ .+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555554321 11 133466666677777777777777776543 2445777777777777777777777
Q ss_pred HHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 009663 339 FEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM- 416 (529)
Q Consensus 339 ~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 416 (529)
|++..+ +.|+ ...+..+..++...|++++|.+.++...+. .|+..........+...++.++|.+.|++.
T Consensus 121 ~~~Al~-----l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 121 FDSVLE-----LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777754 3343 455666666677777777777777777643 453322222222334556777777777554
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 417 -KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI-------EIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 417 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
...|+...+ .......|+..++ +.++.+. +..|..+.+|..++.++.+.|++++|+..|++..+.++
T Consensus 193 ~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 223332222 1222234444332 2333333 34455566777777777777777777777777776654
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=9.4e-07 Score=79.60 Aligned_cols=282 Identities=11% Similarity=0.034 Sum_probs=207.0
Q ss_pred HhcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH-HHHHHhhccCC
Q 009663 192 TRVGDIKNAASLFDSMP-----DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV-CALSAIGHTGM 265 (529)
Q Consensus 192 ~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~-~ll~~~~~~~~ 265 (529)
+-.++...|...+-.+. ..|+.....+...+...|+.++|+..|++.+ -+.|+..+-. .....+...|+
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-----~~dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL-----CANPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh-----hCChhhhhhHHHHHHHHHhccC
Confidence 34455555555443332 3478889999999999999999999999987 4566554321 12223457788
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 009663 266 LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEM 342 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m 342 (529)
.+....+...+....- .+...|-.-........+++.|+.+-++.... ++..|-.-...+...+++++|.-.|+..
T Consensus 282 ~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred HhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 8887777777665431 23333333444556678899999888876544 4455655567889999999999999998
Q ss_pred hhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHH-hcCChHHHHHHHHhC-CC
Q 009663 343 MRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV-DLLG-RAGRFEEALEVVKGM-KI 418 (529)
Q Consensus 343 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~ 418 (529)
.. +.| +...|..|+.+|...|.+.+|...-+...+.. ..+..+...+. ..+. ...--++|.++++.. .+
T Consensus 361 q~-----Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 361 QM-----LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred Hh-----cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 53 554 67899999999999999999988887776532 33455544442 2222 222357899999887 77
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 419 EPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 419 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+|+ ....+.+...|...|..+.++.++++.+...| |...+..|+..+...+.+.+|.+.|......+.
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 887 55677788889999999999999999999999 789999999999999999999999988866544
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=8.5e-07 Score=83.57 Aligned_cols=412 Identities=11% Similarity=0.019 Sum_probs=230.7
Q ss_pred HHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchH-HHHHHhCcc
Q 009663 51 LVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIY-PHVLKSCPD 126 (529)
Q Consensus 51 ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~~l~~~~~~ 126 (529)
=++.+...+ ++++|.+....+. +.+...+..-+-++.+. +.+++|+.+.+.-... .....| -.-.-+..+
T Consensus 18 ~ln~~~~~~-e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~-~ky~~ALk~ikk~~~~----~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNG-EYEEAVKTANKILSIVPDDEDAIRCKVVALIQL-DKYEDALKLIKKNGAL----LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHhccch-HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh-hHHHHHHHHHHhcchh----hhcchhhHHHHHHHHH
Confidence 345566666 8888888777765 34556677777777777 8888887544332110 111111 111222347
Q ss_pred CCCchHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHH-HhcCCHHHHHHHH
Q 009663 127 VLESRGTKMVHTQIVKSGFEQ-YPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGY-TRVGDIKNAASLF 204 (529)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~A~~~~ 204 (529)
.+..++|...++ |..+ +..+...-...+.+.| ++++|..+|+.+.+.+...+...+.+- ...+-.-.+. +.
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~-~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLE-RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HH
Confidence 778888887776 2222 3335555566777888 888888888888665544444433321 1111111121 33
Q ss_pred hhCCCCChhhHH---HHHHHHHhCCChhHHHHHHHHhhhcccCCCCC----CHH-------HHHHHHHHhhccCCchHHH
Q 009663 205 DSMPDRDVPAWN---SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP----NQV-------TLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 205 ~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p----~~~-------~~~~ll~~~~~~~~~~~a~ 270 (529)
+..+.....+|. .....++..|++.+|+++++....-+...+.- +.. .-..+..++...|+-++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 333333233333 34556777899999999998873221111111 111 1223344567889999999
Q ss_pred HHHHHHHHhCCCCCccH----HHHHHHHHHhCCCHH-HHHHHHhhcCCCCh---------------hHHHHHHHHHHHcC
Q 009663 271 VIHGYVYRNGLDLDSFI----SNALIDMYGKCGSLK-EARRAFDRNSKKRL---------------TSWNSMINSFALHG 330 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~---------------~~~~~li~~~~~~~ 330 (529)
.++...++..+. |... .|.|+.+-....-++ .++..++....... ..-+.++..| .+
T Consensus 245 ~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tn 321 (652)
T KOG2376|consen 245 SIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TN 321 (652)
T ss_pred HHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hh
Confidence 999888887653 3322 222222111111111 12222222211111 1111222222 23
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC--CCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChH
Q 009663 331 QSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH--GGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 331 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 407 (529)
.-+.+.++.... .+..|.. .+.+++..+.+ ...+..+..++....+. .+.+ ..+....++.....|+++
T Consensus 322 k~~q~r~~~a~l-----p~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 322 KMDQVRELSASL-----PGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred hHHHHHHHHHhC-----CccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHH
Confidence 344454444443 3444543 34444444322 22467778888777643 2223 556677788899999999
Q ss_pred HHHHHHH--------hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCchhHHHHHHHHHhcCC
Q 009663 408 EALEVVK--------GM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE-------IDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 408 ~A~~~~~--------~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~ 471 (529)
.|.+++. .+ .+.-.+.+..++...+.+.++.+.|..++..++. -.+.-...+..++..-.+.|+
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9999998 43 3444566677777778888888878888877766 112223344455556678899
Q ss_pred HHHHHHHHHHHhhCC
Q 009663 472 WDEVRKVRKMLKDRN 486 (529)
Q Consensus 472 ~~~a~~~~~~~~~~~ 486 (529)
-++|..+++++.+.+
T Consensus 474 ~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 474 EEEASSLLEELVKFN 488 (652)
T ss_pred hHHHHHHHHHHHHhC
Confidence 999999999998754
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=5.1e-07 Score=79.60 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHh-CccCCCchHHHHHHHHHHHh
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKS-CPDVLESRGTKMVHTQIVKS 143 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~ 143 (529)
-.+++|+++|.+.... .|+-...+.-+.. |.+..-++-+.+++.--++.
T Consensus 165 ~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 4566666666666654 2343344333333 34555555566666555543
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2e-07 Score=80.21 Aligned_cols=388 Identities=13% Similarity=0.029 Sum_probs=239.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHH-HHHHH
Q 009663 80 YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVET-ALVNS 158 (529)
Q Consensus 80 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~ 158 (529)
+.+.+..+.+. .++..|++++..-.++. +.+......+..+|....++..|-..++++...- |...-|. --...
T Consensus 13 ftaviy~lI~d-~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRD-ARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHH-hhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 56677777788 88999999998887775 4577888888888889999999999999987753 3333222 23456
Q ss_pred HHhcCCCHHHHHHHHhhCCC-CChhhHHHHHHH--HHhcCCHHHHHHHHhhCC-CCChhhHHHHHHHHHhCCChhHHHHH
Q 009663 159 YSRSGNDIGIARKLFDEMSD-RNVVSWTAMISG--YTRVGDIKNAASLFDSMP-DRDVPAWNSVIAGCTQNGLFSDAISF 234 (529)
Q Consensus 159 ~~~~g~~~~~A~~~~~~~~~-~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 234 (529)
+.+.+ .+..|+++...|.+ ++...-..-+.+ .-..+++..+..++++.+ +.+..+.+.......+.|+++.|++-
T Consensus 88 LY~A~-i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 88 LYKAC-IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHHhc-ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 67788 89999999998887 333222222222 335789999999999998 46777777778888899999999999
Q ss_pred HHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC-------------Cc---------------c
Q 009663 235 FRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL-------------DS---------------F 286 (529)
Q Consensus 235 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~ 286 (529)
|+...+- +|..|- ..|+..+ +..+.++.+.|+++..++++.|+.. |. .
T Consensus 167 FqaAlqv--sGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 167 FQAALQV--SGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHhh--cCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 9988742 355553 4555444 4567789999999999999877531 11 1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKK-----RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLL 361 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~ 361 (529)
.+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.= ..+++.+..+-+.-+.. ... ....||..++
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~---~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ---QNP-FPPETFANLL 317 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh---cCC-CChHHHHHHH
Confidence 1222233455678888888888887754 555555443221 23444444444444433 211 2346788888
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCC
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIE-PQIEHYGCLVDLLG-RAGRFEEALEVVKGMKIEP--DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 437 (529)
-.||+..-++.|-.++.+-... ... .+...|+ |++++. ..-..++|++-++.+.-.- ......+-+. -.+..+
T Consensus 318 llyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQ-e~r~~~ 394 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQ-EARHNR 394 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc
Confidence 8888887777777777553211 111 1222333 233332 3345566655554441000 0000001111 112222
Q ss_pred H----HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 438 T----DFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 438 ~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
- ..+++-+++.+++. -.+...-++.|++..++.-+.++|..-.+-.-.
T Consensus 395 dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~e 446 (459)
T KOG4340|consen 395 DDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCND 446 (459)
T ss_pred cHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcc
Confidence 1 22334444444432 124455677888999999999998776555443
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=2.3e-09 Score=100.25 Aligned_cols=223 Identities=13% Similarity=0.116 Sum_probs=176.6
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHH
Q 009663 260 IGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 336 (529)
+.+.|++.+|.-.|+..++.++. +..+|..|.......++-..|+..+.+..+ .|......|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 46788899999999999988764 778899999999999998999988887654 35567888888999999999999
Q ss_pred HHHHHHhhccc-CC--CC--CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 009663 337 CVFEEMMRCQD-HN--IR--PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALE 411 (529)
Q Consensus 337 ~~~~~m~~~~~-~~--~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 411 (529)
..++.-..... .. .. ++..+-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 99988754100 00 00 00000000 12233334556667777766665666788999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 412 VVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 412 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.|+.+ .++| |...||.|...++...+.++|+..|.+++++.|.-..+...|+..|...|.++||...|-.....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99988 6677 67899999999999999999999999999999999999999999999999999999998777544
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.8e-07 Score=87.09 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=113.3
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChh----------HHHHHH
Q 009663 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLT----------SWNSMI 323 (529)
Q Consensus 254 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 323 (529)
..+.++..+..+++.+.+.+....+.. -+..-++....+|...|.+..+....+...+.+.. .+..+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555556666677777777666655 34555566666777777766666555443332211 222233
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHh
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI-EHYGCLVDLLGR 402 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 402 (529)
.+|.+.++++.++..|.+... ....|+..+ +....+++....+... -+.|.. .-...-...+.+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLt---e~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALT---EHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFK 370 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhh---hhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHh
Confidence 456666777777777777654 333333211 1222333333333222 222321 111112344555
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 403 AGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 403 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
.|++..|...|.++ ...| |...|..-..+|.+.|.+..|+.-.+...+++|+....|..=+.++....+|++|.+.|+
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555 3233 455555555556666666666666666666666555555555555555566666666555
Q ss_pred HHhhCC
Q 009663 481 MLKDRN 486 (529)
Q Consensus 481 ~~~~~~ 486 (529)
+..+..
T Consensus 451 eale~d 456 (539)
T KOG0548|consen 451 EALELD 456 (539)
T ss_pred HHHhcC
Confidence 554443
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=8e-08 Score=93.39 Aligned_cols=255 Identities=13% Similarity=0.080 Sum_probs=153.4
Q ss_pred HHHhCCChhHHHHHHHHhhhcccCCCCCCH-HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC-
Q 009663 221 GCTQNGLFSDAISFFRRMGMEVSDNIRPNQ-VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC- 298 (529)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 298 (529)
.+...|++++|++.+..-. +..+|. ..+......+.+.|+.++|..++..+++.++. +..-|..+..+....
T Consensus 13 il~e~g~~~~AL~~L~~~~-----~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE-----KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh-----hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhc
Confidence 3455566666666665543 223333 33334445556666666666666666665532 333333333333211
Q ss_pred ----CCHHHHHHHHhhcCCCChh--HHHHHHHHHHHcCCh-hHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 299 ----GSLKEARRAFDRNSKKRLT--SWNSMINSFALHGQS-ENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 299 ----g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
...+....+|+++...-+. ....+.-.+..-..+ ..+..++..+.. .|+++ +|..+-..|....+..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~---KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR---KGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh---cCCch---HHHHHHHHHcChhHHH
Confidence 1344445555544322111 111111111111111 234445556665 66654 4555555565555555
Q ss_pred HHHHHHHHhHHhc-------------CCCCChh--HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH
Q 009663 372 QGRAYFKLMTKTY-------------RIEPQIE--HYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKI 434 (529)
Q Consensus 372 ~a~~~~~~~~~~~-------------~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 434 (529)
-...++....... .-.|+.. ++..+.+.|...|++++|++++++. ...|+ +..|..-...+.+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5555555544321 1123332 4466788899999999999999977 55675 6777778888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 435 YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 435 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.|++.+|.+.++.+..+++.|..+-+-.+..+.++|+.++|..++...-+.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999999998988999999999999999999999988877765
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=1.4e-07 Score=91.77 Aligned_cols=285 Identities=14% Similarity=0.102 Sum_probs=152.8
Q ss_pred HHhcCCHHHHHHHHhhCCCC--C-hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhh------
Q 009663 191 YTRVGDIKNAASLFDSMPDR--D-VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIG------ 261 (529)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~------ 261 (529)
+...|++++|++.++.-... | ..........+.+.|+.++|...|..+... .|+...|...+..+.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHhhhccc
Confidence 34455555555555443321 2 223334445556666666666666666532 444444443333322
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHH-HHHHHHhhcCCCChh-HHHHHHHHHHHcCChhHHHHHH
Q 009663 262 HTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLK-EARRAFDRNSKKRLT-SWNSMINSFALHGQSENSICVF 339 (529)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~ 339 (529)
...+.+....+++.+...- |.......+.-.+.....+. .+..++..+...++. +|+.+-..|......+-...++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 1113444455555554432 12222211111111111222 222333333344443 4444444444333333333444
Q ss_pred HHHhhc-cc----------CCCCCCH--HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 009663 340 EEMMRC-QD----------HNIRPDG--VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGR 405 (529)
Q Consensus 340 ~~m~~~-~~----------~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 405 (529)
...... .. ..-.|.. .++..+...|...|++++|..++++.+. ..|+ +..|..-.+.|-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCC
Confidence 443220 00 1123433 2445566777788888888888888874 3675 7778888888888888
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC-------chhHHHHHHHHHhcCCHHH
Q 009663 406 FEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNN-------GGYGIMLANIYGELGKWDE 474 (529)
Q Consensus 406 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~ 474 (529)
+++|.+.++.. ...+ |..+-+.....+.+.|++++|.+.+....+.+ |.. ..+..-.+.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888888877 3444 45555556667788888888888888776644 221 2233445778888888888
Q ss_pred HHHHHHHHhhC
Q 009663 475 VRKVRKMLKDR 485 (529)
Q Consensus 475 a~~~~~~~~~~ 485 (529)
|+..|..+.+.
T Consensus 324 ALk~~~~v~k~ 334 (517)
T PF12569_consen 324 ALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHH
Confidence 88777666443
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=4.4e-08 Score=81.25 Aligned_cols=198 Identities=14% Similarity=0.057 Sum_probs=127.7
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALH 329 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 329 (529)
...+.-.|...|+...|..-++++++..+. +..++..+...|.+.|..+.|.+.|++.. ..+....|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 344445667777777777777777776542 45566667777777777777777776543 23444666666667777
Q ss_pred CChhHHHHHHHHHhhcccCCC-CCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 009663 330 GQSENSICVFEEMMRCQDHNI-RPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 407 (529)
|++++|...|++... ... .--..||..+.-|..+.|+.+.|...|++..+. .| .+.....+.....+.|++-
T Consensus 117 g~~~eA~q~F~~Al~---~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 117 GRPEEAMQQFERALA---DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred CChHHHHHHHHHHHh---CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccch
Confidence 777777777777665 221 112346666666667777777777777776632 44 3556666667777777777
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 009663 408 EALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 408 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 457 (529)
.|..+++.. +..++..+....|..-.+.|+.+.+.+.=.++.+..|.+..
T Consensus 191 ~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 191 PARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 777777666 33466666666666666677777777766666667775544
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.06 E-value=1.3e-08 Score=92.08 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=102.2
Q ss_pred HHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCc
Q 009663 191 YTRVGDIKNAASLFDSMPDR----DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGML 266 (529)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 266 (529)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .++.. +-.|.......+...+...++-
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~----~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK----SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T----TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc----CCChhHHHHHHHHHHHhCccch
Confidence 334566666664433 1111 2233445556666666655433 22221 2244444444444433332333
Q ss_pred hHHHHHHHHHHHhCCC-CCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 009663 267 QLGKVIHGYVYRNGLD-LDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRC 345 (529)
Q Consensus 267 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 345 (529)
+.+..-++........ .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~- 159 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ- 159 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 3333333222222211 11122222233444556666666555543 2333444445555555555555555555532
Q ss_pred ccCCCCCCHHHHHHHHHHHh----CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 009663 346 QDHNIRPDGVTFISLLNACT----HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP 420 (529)
Q Consensus 346 ~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 420 (529)
...| .+...+..++. -.+.+..|..+|+++.. ...+++.+.+.+..++...|++++|.+++++. ...|
T Consensus 160 ----~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 160 ----IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp ----CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred ----cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 2222 22222222221 12245555555555543 22344445555555555555555555555443 2222
Q ss_pred -CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCC
Q 009663 421 -DEVVWGSLLNGCKIYGRT-DFAEFAVKKLIEIDPN 454 (529)
Q Consensus 421 -~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~ 454 (529)
++.++..++.+....|+. +.+.+.+.++....|+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 334444444444444444 3444455555555553
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.04 E-value=2.9e-07 Score=88.63 Aligned_cols=372 Identities=16% Similarity=0.160 Sum_probs=215.8
Q ss_pred ChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCC-cchHHHHHHhCccCCCchHHHHHHHH
Q 009663 61 NLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPN-QFIYPHVLKSCPDVLESRGTKMVHTQ 139 (529)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (529)
++.+|..+|-+-. ++. ..|..|... .+|++++.+-+. .| .|. ...-.+.++++...|+-++|-++-.
T Consensus 546 kfk~ae~ifleqn--~te---~aigmy~~l-hkwde~i~lae~---~~--~p~~eklk~sy~q~l~dt~qd~ka~elk~- 613 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN--ATE---EAIGMYQEL-HKWDEAIALAEA---KG--HPALEKLKRSYLQALMDTGQDEKAAELKE- 613 (1636)
T ss_pred hhhHHHHHHHhcc--cHH---HHHHHHHHH-HhHHHHHHHHHh---cC--ChHHHHHHHHHHHHHHhcCchhhhhhhcc-
Confidence 7888888875421 111 224444444 678887776442 23 232 2222344555556666665544321
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhC--CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh----
Q 009663 140 IVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEM--SDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVP---- 213 (529)
Q Consensus 140 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---- 213 (529)
. +.. -.+.|..|.+.| .+..|.+....= ...|......+..++.+..-++.|-.+|+++..++-.
T Consensus 614 --s-----dgd-~laaiqlyika~-~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~f 684 (1636)
T KOG3616|consen 614 --S-----DGD-GLAAIQLYIKAG-KPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECF 684 (1636)
T ss_pred --c-----cCc-cHHHHHHHHHcC-CchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHH
Confidence 1 111 134567777777 666665543221 1245555555666666666666666666666543221
Q ss_pred ----------------------h-HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHH
Q 009663 214 ----------------------A-WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 214 ----------------------~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 270 (529)
+ -......+.+.|+++.|+..|-+... ..-.+.+......+.+|+
T Consensus 685 kkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~------------~~kaieaai~akew~kai 752 (1636)
T KOG3616|consen 685 KKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------------LIKAIEAAIGAKEWKKAI 752 (1636)
T ss_pred HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh------------HHHHHHHHhhhhhhhhhH
Confidence 0 01112223334444444444433321 122344556677888888
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 271 VIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
.+++.+.+... -..-|..+.+.|+..|+++.|+++|-+.. .++-.|..|.+.|+|+.|.++-.+. .|.
T Consensus 753 ~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~-----~~~ 820 (1636)
T KOG3616|consen 753 SILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC-----HGP 820 (1636)
T ss_pred hHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh-----cCc
Confidence 88887776643 34457778888888999999998886543 3455678888899999888887776 455
Q ss_pred CCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 009663 351 RPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLN 430 (529)
Q Consensus 351 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 430 (529)
......|..-..-+-..|++.+|.++|-.+. .|+. -|.+|-+.|..++.+++.++..-..-..|-..+..
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAK 890 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHH
Confidence 5555666666666777888888888775543 3442 46778888888888888877621233445556666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccE
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSW 495 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 495 (529)
-+-..|+...|...|-++.+. ..-.+.|...+.|++|.++-+.--..+..+...+.|
T Consensus 891 e~e~~g~lkaae~~flea~d~--------kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAGDF--------KAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred HHHhccChhHHHHHHHhhhhH--------HHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 677778887777776655432 223344555566666665554333333333333334
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=2.9e-07 Score=80.77 Aligned_cols=292 Identities=12% Similarity=0.098 Sum_probs=218.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHH---HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH-HHHHHh
Q 009663 185 TAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVI---AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV-CALSAI 260 (529)
Q Consensus 185 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~-~ll~~~ 260 (529)
.-+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.=+..+. ..+||...-. .-...+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl-----elKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL-----ELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH-----hcCccHHHHHHHhchhh
Confidence 34667778899999999999999998888877765 46888999999999999988 5688865432 223457
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCc--cHH------------HHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHH
Q 009663 261 GHTGMLQLGKVIHGYVYRNGLDLDS--FIS------------NALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMI 323 (529)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 323 (529)
.+.|.++.|..-|+.+++..+.... .++ ...+..+...|+...|+.....+.+- |...|..-.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 8999999999999999987653211 112 12344556688999999988877653 556788888
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh----HHHHH---
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE----HYGCL--- 396 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l--- 396 (529)
.+|...|++..|+.-++...+ . ...+..++.-+-..+...|+.+.+....++.. .+.|+-. .|-.|
T Consensus 197 kc~i~~~e~k~AI~Dlk~ask---L-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASK---L-SQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHh---c-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHH
Confidence 999999999999998888754 2 22344555556666777888888887777766 5677632 22221
Q ss_pred ------HHHHHhcCChHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 397 ------VDLLGRAGRFEEALEVVKGM-KIEPDE-----VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 397 ------~~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
+......++|.++++-.+.. ...|.. ..+..+-.++...|++.+|++...+++.++|++..++.--+.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 12234567788888777765 555652 234445556777899999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 465 IYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 465 ~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
+|.-...+|+|+.-|+...+.+..
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999877654
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.04 E-value=4.3e-06 Score=79.71 Aligned_cols=426 Identities=12% Similarity=0.076 Sum_probs=256.5
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 009663 77 TYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALV 156 (529)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 156 (529)
...|-..+..+..+ |+.......|+..+..=...-....|...+......+-++.+..++...++. ++..-+..+
T Consensus 102 pRIwl~Ylq~l~~Q-~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQ-GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 34577777778888 9999999999888775322445667888888888888899999999988764 333467778
Q ss_pred HHHHhcCCCHHHHHHHHhhCCCC----------ChhhHHHHHHHHHhcCCH---HHHHHHHhhCCCC----ChhhHHHHH
Q 009663 157 NSYSRSGNDIGIARKLFDEMSDR----------NVVSWTAMISGYTRVGDI---KNAASLFDSMPDR----DVPAWNSVI 219 (529)
Q Consensus 157 ~~~~~~g~~~~~A~~~~~~~~~~----------~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~----~~~~~~~li 219 (529)
..++..+ ++++|.+.+..+... +-..|..+-+...+.-+. -....+++.+... -...|.+|.
T Consensus 177 e~L~~~d-~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 177 EYLAKSD-RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHhcc-chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 8888999 999999999888752 334566665555544332 1233444444432 235789999
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhcc----------------C------CchHHHHHHHHHH
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHT----------------G------MLQLGKVIHGYVY 277 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~ 277 (529)
+.|.+.|++++|-++|++..+. ..+..-|..+..+|+.- + +++-...-|+.+.
T Consensus 256 dYYIr~g~~ekarDvyeeai~~-----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT-----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 9999999999999999987643 23333333333333211 1 1222233344333
Q ss_pred HhCCC-----------CCccHHHHHHHHHHhCCCHHHHHHHHhhcCC-------CC--hhHHHHHHHHHHHcCChhHHHH
Q 009663 278 RNGLD-----------LDSFISNALIDMYGKCGSLKEARRAFDRNSK-------KR--LTSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 278 ~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~a~~ 337 (529)
..++. .+...|..-+ -+..|+..+-...|.+..+ ++ ...|..+...|-..|+.+.|..
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 32210 1111222111 1223455555555554321 11 1268888889999999999999
Q ss_pred HHHHHhhcccCCCCC---CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc---------CCCC-------ChhHHHHHHH
Q 009663 338 VFEEMMRCQDHNIRP---DGVTFISLLNACTHGGLVEQGRAYFKLMTKTY---------RIEP-------QIEHYGCLVD 398 (529)
Q Consensus 338 ~~~~m~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~p-------~~~~~~~l~~ 398 (529)
+|++..+ -..+- -..+|..-...-.+..+++.|.++.+.+..-. |-.| +...|+.+++
T Consensus 409 ifeka~~---V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 409 IFEKATK---VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHhhc---CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9998865 22221 12345555555566778888888888775210 0001 1234555666
Q ss_pred HHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHh---cCC
Q 009663 399 LLGRAGRFEEALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNNGGYGIMLANIYGE---LGK 471 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~---~g~ 471 (529)
.-...|-++....+++++ .++ .++.+.......+-.+.-++++.++|++.+.+. |.-..+|+....-+.+ .-+
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 666778888888888887 222 133333333444556677889999999988866 4344455554443332 236
Q ss_pred HHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHH
Q 009663 472 WDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525 (529)
Q Consensus 472 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (529)
.+.|..+|++..+... |.-..+. .-.|....-+||-+.-+.+++++-
T Consensus 566 lEraRdLFEqaL~~Cp-p~~aKti------yLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 566 LERARDLFEQALDGCP-PEHAKTI------YLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8899999999988332 2221111 112222333556666666666653
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=4.6e-08 Score=88.53 Aligned_cols=245 Identities=11% Similarity=0.017 Sum_probs=133.1
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG 299 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 299 (529)
+-+.-.|++..++.-.+ .... .-..+......+.+++...|+.+.++. .+.+. ..|.......+...+...+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~---~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF---SPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS---TCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTST
T ss_pred HHHHHhhhHHHHHHHhh-ccCC---CchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCcc
Confidence 34445677777775555 2211 111223344455566666666554332 22222 2455555554544444334
Q ss_pred CHHHHHHHHhhcC-CC----ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHH
Q 009663 300 SLKEARRAFDRNS-KK----RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGR 374 (529)
Q Consensus 300 ~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 374 (529)
+-+.+..-+++.. .. +..........+...|++++|++++... .+.......+..+.+.++++.|.
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---------~~lE~~al~Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---------GSLELLALAVQILLKMNRPDLAE 151 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---------TCHHHHHHHHHHHHHTT-HHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---------CcccHHHHHHHHHHHcCCHHHHH
Confidence 5555555554433 22 1111222223445567777777665432 23455556667777777777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 375 AYFKLMTKTYRIEPQIEHYGCLVDLLG----RAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 375 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
+.++.|. .+..| .+...|..++. ..+.+.+|..+|+++ ...+++.+.+.+..++...|++++|.+++.++
T Consensus 152 k~l~~~~---~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 152 KELKNMQ---QIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHH---CCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHH---hcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7777776 23333 33333444332 233577777777777 44566777777777777777777777777777
Q ss_pred HhcCCCCchhHHHHHHHHHhcCCH-HHHHHHHHHHhhC
Q 009663 449 IEIDPNNGGYGIMLANIYGELGKW-DEVRKVRKMLKDR 485 (529)
Q Consensus 449 ~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 485 (529)
.+.+|+++.+...++.+....|+. +.+.+++.++...
T Consensus 228 l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 228 LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 777777777777777777777776 5566677766654
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.8e-05 Score=79.32 Aligned_cols=390 Identities=11% Similarity=0.110 Sum_probs=256.0
Q ss_pred HHHHHHHHhCCC--CchhHHHHHHHHHhhcCCChhHHHHHhhcCC-CCChh-----HHHHHHHHHhcCCCChHHHHHHHH
Q 009663 31 QLQSFLTTLGQS--QTNFYAFKLVRFCTLKLSNLTYARFIFDHLT-TPNTY-----LYTAMITAYASQPAHASSAFSLYR 102 (529)
Q Consensus 31 ~i~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-~~~~~-----~~~~ll~~~~~~~~~~~~a~~~~~ 102 (529)
++.++....+++ .||.-.+..+.++...+ -..+-.++++.+. .++++ .-|.|+-.-.+ -+.....+..+
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtad-Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik--ad~trVm~YI~ 1044 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTAD-LPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK--ADRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh--cChHHHHHHHH
Confidence 445555555543 35566666777777776 6777777777765 33322 33444444333 35556666666
Q ss_pred HHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChh
Q 009663 103 DMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVV 182 (529)
Q Consensus 103 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~ 182 (529)
++-..+ .|+ +...+...+-+++|..+|+.. ..+....+.|+. .-+ ..+.|.++-++..+| .
T Consensus 1045 rLdnyD--a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~-~ldRA~efAe~~n~p--~ 1105 (1666)
T KOG0985|consen 1045 RLDNYD--APD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIG-SLDRAYEFAERCNEP--A 1105 (1666)
T ss_pred HhccCC--chh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---Hhh-hHHHHHHHHHhhCCh--H
Confidence 664443 232 333445566677777777644 223344444443 234 677777777766544 5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc
Q 009663 183 SWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH 262 (529)
Q Consensus 183 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~ 262 (529)
.|..+..+-.+.|.+.+|++-|-+ ..|+..|..++....+.|.|++-.+++...++. ...|.. =+.++-+|++
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk---~~E~~i--d~eLi~AyAk 1178 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK---VREPYI--DSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---hcCccc--hHHHHHHHHH
Confidence 688899999999999999887744 456677888999999999999999988877755 444443 3567788888
Q ss_pred cCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 009663 263 TGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEM 342 (529)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 342 (529)
.+++.+.+.++. .|+........+-|...|.++.|.-+|. ++..|..+...+...|++..|...-+++
T Consensus 1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888877666542 4677777778888888899998888875 4557888999999999999998887776
Q ss_pred hhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 009663 343 MRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD 421 (529)
Q Consensus 343 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 421 (529)
. +..||...-.+|...+.+.-| ++.. ..+.....-..-|+..|...|-+++...+++.. |++.-
T Consensus 1247 n---------s~ktWK~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA 1311 (1666)
T KOG0985|consen 1247 N---------STKTWKEVCFACVDKEEFRLA-----QICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA 1311 (1666)
T ss_pred c---------chhHHHHHHHHHhchhhhhHH-----HhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH
Confidence 3 567888888888887665543 2331 123335667788999999999999999999876 65543
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC-CC------CchhHHHHHHHHHhcCCHHHHHH
Q 009663 422 -EVVWGSLLNGCKIYGRTDFAEFAVKKLIE-ID-PN------NGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 422 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-p~------~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
...|.-+.-.|.+ -++++..+.++-... .+ |. ....|.-+...|.+-..||.|.-
T Consensus 1312 HMgmfTELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1312 HMGMFTELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3344444444443 345555555444433 11 21 34455666666666666666543
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=2.8e-06 Score=81.20 Aligned_cols=256 Identities=13% Similarity=0.008 Sum_probs=136.0
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCH-HHHHHHHHHhh----ccCCchHHHHHHHHHHHhCCCCC-ccHHHHHHH
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ-VTLVCALSAIG----HTGMLQLGKVIHGYVYRNGLDLD-SFISNALID 293 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~-~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 293 (529)
..+...|++++|.+.+++.... .|+. ..+.. ...+. ..+..+.+...+.. ..+..|+ ......+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~-----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD-----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHH
Confidence 3445567777777777766532 3322 22221 11111 23333344433333 1111122 223334455
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-CCCH--HHHHHHHHHHhCC
Q 009663 294 MYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI-RPDG--VTFISLLNACTHG 367 (529)
Q Consensus 294 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~p~~--~~~~~l~~~~~~~ 367 (529)
.+...|++++|...+++..+ .+...+..+...+...|++++|...+++... ... .|+. ..|..+...+...
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~---~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD---TWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh---ccCCCcchhHHHHHHHHHHHHHC
Confidence 66777777777777776543 2344666677777777788888877777654 211 1222 2344566677777
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-HhC-CCCC---CHHHHHHHHHHHHHcCC
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHY-G--CLVDLLGRAGRFEEALEV--V-KGM-KIEP---DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p---~~~~~~~l~~~~~~~g~ 437 (529)
|++++|..++++........+..... . .++.-+...|....+.++ + ... ...| ..........++...|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 88888888887765321111111111 1 222333334433322222 1 111 1001 11222345566778888
Q ss_pred HHHHHHHHHHHHhcC-C---C-----CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 438 TDFAEFAVKKLIEID-P---N-----NGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++|...++.+.... . . ........+.++...|++++|.+.+......+
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999998888876622 1 1 23444556667789999999999998887654
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=4.8e-07 Score=77.90 Aligned_cols=182 Identities=15% Similarity=0.118 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHH-HHHHHHhC
Q 009663 152 ETALVNSYSRSGNDIGIARKLFDEMSDR---NVVSWTAMISGYTRVGDIKNAASLFDSMPD--RDVPAWNS-VIAGCTQN 225 (529)
Q Consensus 152 ~~~l~~~~~~~g~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 225 (529)
+++++..+.+.. +++.|++++..-.+. +......+..+|-...++..|-..++++.. |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~-ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDA-RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHh-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 455555566666 677777766655442 334455566666666666666666666543 22222221 23445566
Q ss_pred CChhHHHHHHHHhhhcccCCCCCCHHHHHHHHH--HhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHH
Q 009663 226 GLFSDAISFFRRMGMEVSDNIRPNQVTLVCALS--AIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE 303 (529)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 303 (529)
+.+.+|+.+...|.. .|+...-..-+. .....+++..+..+.++.-..| +..+.+.......+.|+++.
T Consensus 92 ~i~ADALrV~~~~~D------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 92 CIYADALRVAFLLLD------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred cccHHHHHHHHHhcC------CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 666666666666631 232222211122 1234455555555555433211 22333333344455566666
Q ss_pred HHHHHhhcCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 009663 304 ARRAFDRNSKK----RLTSWNSMINSFALHGQSENSICVFEEMMR 344 (529)
Q Consensus 304 A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 344 (529)
|.+-|+...+- ....|+..+ +..+.|+++.|++...++.+
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHH
Confidence 66666544332 122444333 23344555666666655555
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=6.3e-06 Score=80.73 Aligned_cols=151 Identities=10% Similarity=-0.010 Sum_probs=77.9
Q ss_pred chhHHHHHH--HHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCC--------CCCCC
Q 009663 44 TNFYAFKLV--RFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRG--------QPQPN 113 (529)
Q Consensus 44 ~~~~~~~ll--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~ 113 (529)
|+.+--.++ +.|.--| +.+.|.+-.+.+++..+ |..|.+.+.+. ++.+-|.-.+..|.... .-.|+
T Consensus 725 d~~TRkaml~FSfyvtiG-~MD~AfksI~~IkS~~v--W~nmA~McVkT-~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIG-SMDAAFKSIQFIKSDSV--WDNMASMCVKT-RRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred CHHHHHhhhceeEEEEec-cHHHHHHHHHHHhhhHH--HHHHHHHhhhh-ccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 344444444 2345555 77777776666665433 55555555555 55555554444443210 00111
Q ss_pred cchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCC-ChhhHHHHHHHHH
Q 009663 114 QFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR-NVVSWTAMISGYT 192 (529)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~-~~~~~~~ll~~~~ 192 (529)
.+=..+.-.....|.+++|+.++.+..+.+ .|=..|-..| .+++|.++-+.-... =-.||......+-
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g-~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQG-MWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcc-cHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 222222223355667777777777665532 1223444556 677777665543331 1234555555555
Q ss_pred hcCCHHHHHHHHhhCCC
Q 009663 193 RVGDIKNAASLFDSMPD 209 (529)
Q Consensus 193 ~~g~~~~A~~~~~~~~~ 209 (529)
..+|.+.|++.|++...
T Consensus 870 ar~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGV 886 (1416)
T ss_pred hhccHHHHHHHHHhcCC
Confidence 66677777777766544
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.6e-06 Score=84.78 Aligned_cols=334 Identities=10% Similarity=0.046 Sum_probs=187.3
Q ss_pred CcchHHHHHHh--CccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC------------
Q 009663 113 NQFIYPHVLKS--CPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD------------ 178 (529)
Q Consensus 113 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~------------ 178 (529)
|..|-..+++. |...|+.+.|.+-.+.+. +...|..+.++|.+.. +.+-|.-.+-.|.+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~-RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTR-RLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhc-cccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45555555554 566677777766555443 3456677777777777 67666666655543
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHH
Q 009663 179 RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALS 258 (529)
Q Consensus 179 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~ 258 (529)
.+...-.-..-.....|.+++|..+|++.+. |..|=..|...|.|++|.++-+.-- .+. =..||..-..
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~D-----RiH-Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKD-----RIH-LRNTYYNYAK 866 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhcc-----cee-hhhhHHHHHH
Confidence 1112222223334456777777777777654 3344455666677777776655321 111 1234444444
Q ss_pred HhhccCCchHHHHHHHHHH----------HhCC---------CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHH
Q 009663 259 AIGHTGMLQLGKVIHGYVY----------RNGL---------DLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSW 319 (529)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 319 (529)
-+...++.+.|+++|++.- ...+ ..|...|......+-..|+.+.|+.+|.... -|
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~ 941 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DY 941 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hh
Confidence 4455566666666655421 1110 1234445555555566777777777776543 35
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc-CCCC--ChhHHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTY-RIEP--QIEHYGCL 396 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p--~~~~~~~l 396 (529)
.+++...|-.|+.++|-++-++-. |......+.+.|...|++.+|..+|.++..-. .+.. .-..-..|
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esg---------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESG---------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcc---------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 666677777788888877766542 44555677788888888888888887765210 0000 00011122
Q ss_pred HHHHHh--cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhcCCC-CchhHHHHH
Q 009663 397 VDLLGR--AGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL----------IEIDPN-NGGYGIMLA 463 (529)
Q Consensus 397 ~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~p~-~~~~~~~l~ 463 (529)
...+.. ..+.-.|.++|++.|..- ..-+..|-+.|.+.+|+++.=+. ..++|+ ||......+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 222222 223445566666664221 22234456667666666543221 114443 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 009663 464 NIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 464 ~~~~~~g~~~~a~~~~~~~~ 483 (529)
+.+....++++|..++-..+
T Consensus 1088 dFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 88888888888888765553
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.89 E-value=9.9e-06 Score=81.14 Aligned_cols=438 Identities=13% Similarity=0.053 Sum_probs=265.5
Q ss_pred hHHHHHHHHHHhCCCCchh-HHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHH
Q 009663 28 HLKQLQSFLTTLGQSQTNF-YAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRD 103 (529)
Q Consensus 28 ~~~~i~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 103 (529)
....++..+....+.++-. .|..|-..|.... +...|.+.|+..- ..+..++......+++. .+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~-~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEE-STWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc-ccHHHHHHHHHH
Confidence 3344555555555555543 5666667777776 8888999998765 46677888999999999 999999998433
Q ss_pred HHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhh
Q 009663 104 MVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVS 183 (529)
Q Consensus 104 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~ 183 (529)
.-+......-...|..+.-.+...++...+..-|+...+.. +.|...|..+..+|.++| ++..|.++|.+...-++..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sG-ry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESG-RYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcC-ceehHHHhhhhhHhcCcHh
Confidence 33322101112233334444778889999999998888775 347889999999999999 9999999998887644332
Q ss_pred -HHH--HHHHHHhcCCHHHHHHHHhhCCCC----------ChhhHHHHHHHHHhCCChhHHHHHHHHh-------hhccc
Q 009663 184 -WTA--MISGYTRVGDIKNAASLFDSMPDR----------DVPAWNSVIAGCTQNGLFSDAISFFRRM-------GMEVS 243 (529)
Q Consensus 184 -~~~--ll~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~ 243 (529)
|.. ..-..+-.|.+.+|...+..+... -..++-.+...+.-.|-..+|.++++.- ..+
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h-- 707 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH-- 707 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--
Confidence 222 223345678888888887776421 1123333333333333333333333322 111
Q ss_pred CCC-----------------------CCCHHHHHHHHHHhhccCCc---h---HHHHHHHHHHHhCCCCCccHHHHHHHH
Q 009663 244 DNI-----------------------RPNQVTLVCALSAIGHTGML---Q---LGKVIHGYVYRNGLDLDSFISNALIDM 294 (529)
Q Consensus 244 ~~~-----------------------~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (529)
.. .|+......+..-.-..+.. + -+.+.+-.-.+. ..+...|..|+..
T Consensus 708 -~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 708 -SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGIN 784 (1238)
T ss_pred -hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHH
Confidence 11 11111111111111111111 1 011111111111 1122333333333
Q ss_pred HHh----CC----CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 009663 295 YGK----CG----SLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNA 363 (529)
Q Consensus 295 ~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~ 363 (529)
|.+ .| +...|+..+.+.. ..+..+|+.|.-. ...|++.-|...|-+.. ...+-...+|..+.-.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~----~sep~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSR----FSEPTCHCQWLNLGVL 859 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhh----hccccchhheecccee
Confidence 322 11 2235666666533 3456678877665 66678888888877764 2233456778888888
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHc
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-------KIEPDEVVWGSLLNGCKIY 435 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~ 435 (529)
+....+++.|...|...+ .+.| +...|..........|+.-++..+|..- +--|+..-|.+...-....
T Consensus 860 ~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred EEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 889999999999999987 5577 5667766666667788888888888652 3355666665555556667
Q ss_pred CCHHHHHHHHH----------HHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 436 GRTDFAEFAVK----------KLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 436 g~~~~A~~~~~----------~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
|++++-+...+ +.....|+...+|...+....+.+.+.+|.....+.
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 76665555444 444466888889999888888888888888776665
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=5.6e-06 Score=80.07 Aligned_cols=398 Identities=15% Similarity=0.129 Sum_probs=235.9
Q ss_pred CCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHH
Q 009663 40 GQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPH 119 (529)
Q Consensus 40 ~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 119 (529)
|.|.-...-...++++...| .-+.|-++-+. ..|.. +.|..|.+. |.+.+|...-..=... ..|......
T Consensus 584 ~~p~~eklk~sy~q~l~dt~-qd~ka~elk~s--dgd~l---aaiqlyika-~~p~~a~~~a~n~~~l---~~de~il~~ 653 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTG-QDEKAAELKES--DGDGL---AAIQLYIKA-GKPAKAARAALNDEEL---LADEEILEH 653 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcC-chhhhhhhccc--cCccH---HHHHHHHHc-CCchHHHHhhcCHHHh---hccHHHHHH
Confidence 44434445566677777777 66666654221 12222 245667777 7776666554222111 345555555
Q ss_pred HHHhCccCCCchHHHHHHHHHHHhC----------------------CCCchhH-HHHHHHHHHhcCCCHHHHHHHHhhC
Q 009663 120 VLKSCPDVLESRGTKMVHTQIVKSG----------------------FEQYPVV-ETALVNSYSRSGNDIGIARKLFDEM 176 (529)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g----------------------~~~~~~~-~~~l~~~~~~~g~~~~~A~~~~~~~ 176 (529)
+..++.+..-+++|-.+|+.+.... ++..+.. -..-..-+...| +++.|..-|-+.
T Consensus 654 ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea 732 (1636)
T KOG3616|consen 654 IAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEA 732 (1636)
T ss_pred HHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHh
Confidence 5555555444555555554442110 0000000 001111122223 333333222221
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH
Q 009663 177 SDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPA--WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV 254 (529)
Q Consensus 177 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~ 254 (529)
.....-+.+......|.+|+.+++.+.+.+..+ |..+...|...|+++.|.++|.+.- .++
T Consensus 733 -----~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~------------~~~ 795 (1636)
T KOG3616|consen 733 -----NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD------------LFK 795 (1636)
T ss_pred -----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc------------hhH
Confidence 111223344556788899999999888766543 6777788999999999999998752 234
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhH
Q 009663 255 CALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSEN 334 (529)
Q Consensus 255 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 334 (529)
-.|..|.+.|++..|.++-++. .|+......|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-+.|..+.
T Consensus 796 dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 796 DAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDD 868 (1636)
T ss_pred HHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchH
Confidence 5677889999999998876543 45555666777777778889999999999988888875 3677888999999
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 335 SICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 335 a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
.+++..+-. |-. -..|-..+..-+...|+...|..-|-+.. -|.+-+.+|...+-|++|.++-+
T Consensus 869 mirlv~k~h-----~d~-l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 869 MIRLVEKHH-----GDH-LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhC-----hhh-hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 888887753 211 12455566667777888888887776553 23445667777777777777766
Q ss_pred hCCCCCCH-----HHHH-------------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 415 GMKIEPDE-----VVWG-------------------SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 415 ~~~~~p~~-----~~~~-------------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
.-| ..+. ..|. .-++-.+..+.++-|.++-+-..+ ...+.+...++..+...|
T Consensus 933 teg-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledeg 1009 (1636)
T KOG3616|consen 933 TEG-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEG 1009 (1636)
T ss_pred ccc-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhcc
Confidence 552 1111 1111 111112333444444444433322 225567778888889999
Q ss_pred CHHHHHHHHHHHhhCCCccCC
Q 009663 471 KWDEVRKVRKMLKDRNAYKTP 491 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~~~~~~~ 491 (529)
++++|-+.+-+..+.+-....
T Consensus 1010 k~edaskhyveaiklntynit 1030 (1636)
T KOG3616|consen 1010 KFEDASKHYVEAIKLNTYNIT 1030 (1636)
T ss_pred chhhhhHhhHHHhhcccccch
Confidence 999998888777777654433
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=6.7e-06 Score=89.02 Aligned_cols=328 Identities=12% Similarity=0.033 Sum_probs=209.2
Q ss_pred HHHHhcCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----C----C--h--hhHHHHHH
Q 009663 157 NSYSRSGNDIGIARKLFDEMSD----RNVVSWTAMISGYTRVGDIKNAASLFDSMPD----R----D--V--PAWNSVIA 220 (529)
Q Consensus 157 ~~~~~~g~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~----~--~--~~~~~li~ 220 (529)
......| +++.+...++.+.. .+..........+...|++++|...+..... . + . .....+..
T Consensus 382 ~~l~~~g-~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 382 WSLFNQG-ELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHhcC-ChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3455567 78887777777642 2333334445556678999998888876421 1 1 1 12222334
Q ss_pred HHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC-----CccHHHHHHHH
Q 009663 221 GCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL-----DSFISNALIDM 294 (529)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~ 294 (529)
.+...|++++|...+++.......+..+ .....+.+...+...|+++.|...+.......... ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 5678999999999999876420001000 11234455556778999999999998877532211 12344556778
Q ss_pred HHhCCCHHHHHHHHhhcCC-------CC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC--HHHHHHHH
Q 009663 295 YGKCGSLKEARRAFDRNSK-------KR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--GVTFISLL 361 (529)
Q Consensus 295 ~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~l~ 361 (529)
+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+...... ...+. ...+..+.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~la 619 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS-NYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh-ccCchHHHHHHHHHH
Confidence 8899999999998865332 11 12344556667778999999999988765211 11122 23344456
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCC-C-CCH----HHHHHHHH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQIEHY-----GCLVDLLGRAGRFEEALEVVKGMKI-E-PDE----VVWGSLLN 430 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~ 430 (529)
......|++++|...++..............+ ...+..+...|+.+.|.+++..... . ... ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 67778999999999998875421111111111 1123445668999999999877621 1 111 12345666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 431 GCKIYGRTDFAEFAVKKLIEID------PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
++...|++++|...++++.... +....+...++.++.+.|+.++|...+.+..+..
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7888999999999999988742 1223467778889999999999999999997665
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=4.8e-07 Score=77.34 Aligned_cols=148 Identities=12% Similarity=0.115 Sum_probs=115.0
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR 402 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (529)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+. -+.+...|..|...|..
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-------~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~ 85 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-------PL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLW 85 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-------cc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 3567788888776555443321 11 0 122356777888788777743 13478899999999999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 009663 403 AGRFEEALEVVKGM-KIEP-DEVVWGSLLNGC-KIYGR--TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 403 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
.|++++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988 5566 677777777764 67777 5999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 009663 478 VRKMLKDRNA 487 (529)
Q Consensus 478 ~~~~~~~~~~ 487 (529)
.++++.+...
T Consensus 166 ~~~~aL~l~~ 175 (198)
T PRK10370 166 LWQKVLDLNS 175 (198)
T ss_pred HHHHHHhhCC
Confidence 9999987765
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=1.9e-07 Score=96.00 Aligned_cols=225 Identities=16% Similarity=0.154 Sum_probs=179.7
Q ss_pred CccHHHHHHHHHHhCCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH
Q 009663 284 DSFISNALIDMYGKCGSLKEARRAFDRNSKK--------RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV 355 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~ 355 (529)
+...|-..+......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+ .--...
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-----ycd~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-----YCDAYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-----hcchHH
Confidence 4556777788888899999999999876542 123788888888888888889999999865 222235
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP---DEVVWGSLLNG 431 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 431 (529)
.|..|...|.+.+.+++|.++++.|.++++ -....|..++..+.+.++-++|.+++++. ..-| ........+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 577888899999999999999999998765 56788999999999999999999999887 4334 34555666777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCC
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKT 511 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (529)
-.+.|+.+++..+|+..+...|.....|..+++.-.++|+.+.++.+|+++...++.+-... -....|++..++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK------fffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK------FFFKKWLEYEKS 1683 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH------HHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999999999988543221 122356777888
Q ss_pred CCChHHHHHH
Q 009663 512 HPRTEEIYDA 521 (529)
Q Consensus 512 ~~~~~~~~~~ 521 (529)
||+.+.+..+
T Consensus 1684 ~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1684 HGDEKNVEYV 1693 (1710)
T ss_pred cCchhhHHHH
Confidence 8886666544
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=9.9e-06 Score=77.38 Aligned_cols=143 Identities=10% Similarity=0.034 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHH---HHHhCccCCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCCHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPH---VLKSCPDVLESRGTKMVHTQIVKSGFEQY-PVVETALVNSYSRSGNDIG 167 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~ 167 (529)
|++++|.+.+++..+.. |.|...+.. ........+....+.+.+... ....|+ ......+...+...| +++
T Consensus 57 g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G-~~~ 131 (355)
T cd05804 57 GDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG-QYD 131 (355)
T ss_pred CCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC-CHH
Confidence 78888888888877764 344434331 112222234444555544431 111222 234445556777788 888
Q ss_pred HHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-----Ch--hhHHHHHHHHHhCCChhHHHHHHHH
Q 009663 168 IARKLFDEMSD--R-NVVSWTAMISGYTRVGDIKNAASLFDSMPDR-----DV--PAWNSVIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 168 ~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~~ 237 (529)
+|.+.+++..+ | +...+..+...+...|++++|...+++..+. +. ..|..+...+...|++++|..++++
T Consensus 132 ~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 132 RAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888887765 3 3456667777778888888888887775431 21 2344677778888888888888887
Q ss_pred hh
Q 009663 238 MG 239 (529)
Q Consensus 238 m~ 239 (529)
..
T Consensus 212 ~~ 213 (355)
T cd05804 212 HI 213 (355)
T ss_pred Hh
Confidence 64
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.83 E-value=4.5e-07 Score=80.85 Aligned_cols=182 Identities=12% Similarity=0.021 Sum_probs=115.0
Q ss_pred CccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---Ch---hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-CCCH-H
Q 009663 284 DSFISNALIDMYGKCGSLKEARRAFDRNSKK---RL---TSWNSMINSFALHGQSENSICVFEEMMRCQDHNI-RPDG-V 355 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~p~~-~ 355 (529)
....+..+...+...|+++.|...|+++... +. .++..+..++...|++++|...++++.+ ... .|.. .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR---LHPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCCchHH
Confidence 3445566667777778888887777765432 21 2556667777777778888877777764 111 1111 1
Q ss_pred HHHHHHHHHhCC--------CcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 009663 356 TFISLLNACTHG--------GLVEQGRAYFKLMTKTYRIEPQI-EHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWG 426 (529)
Q Consensus 356 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 426 (529)
++..+..++... |+++.|.+.++.+.+. .|+. ..+..+..... ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHH
Confidence 333344444433 5677777777777644 3432 22222211100 00000 00112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNN---GGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+...+.+.|++.+|+..++++.+..|++ +..+..++.++.+.|++++|..+++.+..+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45667889999999999999999987754 4788999999999999999999999887654
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3.2e-05 Score=77.68 Aligned_cols=357 Identities=13% Similarity=0.139 Sum_probs=203.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009663 80 YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSY 159 (529)
Q Consensus 80 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (529)
-+-|+.-.-+. ++..-.+..++.....| ..|..+++++.+.|..+++-.+-. ++.+. .-=+..+.-|
T Consensus 841 ~deLv~EvEkR-NRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~f------LkeN~----yYDs~vVGkY 907 (1666)
T KOG0985|consen 841 VDELVEEVEKR-NRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERF------LKENP----YYDSKVVGKY 907 (1666)
T ss_pred hHHHHHHHHhh-hhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHh------cccCC----cchhhHHhhh
Confidence 34455566666 77888888888888888 578899999999988765433211 11111 1111122223
Q ss_pred HhcCCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHh-----------hC-----C-CCChhh
Q 009663 160 SRSGNDIGIARKLFDEMSD--------RNVVSWTAMISGYTRVGDIKNAASLFD-----------SM-----P-DRDVPA 214 (529)
Q Consensus 160 ~~~g~~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~g~~~~A~~~~~-----------~~-----~-~~~~~~ 214 (529)
|... |+-.|.-.|++-.. ..-..|-...+.+.+..|.+-=.+++. +. . ..|+..
T Consensus 908 CEKR-DP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~ 986 (1666)
T KOG0985|consen 908 CEKR-DPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEE 986 (1666)
T ss_pred hccc-CCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHH
Confidence 3333 33322222222111 000112222222222222222111111 10 0 124444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCC-CCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCC------------
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDN-IRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL------------ 281 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------ 281 (529)
...-+.++...+-..+-+++++++.-. +. +.-+...-+.++-...+ -+...+.++.+++-..+.
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~--~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~L 1063 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLD--NSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQL 1063 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcC--CcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhH
Confidence 555566666666666667776666421 11 11111112222222222 222333344333332211
Q ss_pred -----------CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 282 -----------DLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 282 -----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
..+..+.+.|++ .-+..+.|.++-++..+ ...|..+..+-.+.|...+|++-|-+..
T Consensus 1064 yEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyikad------- 1131 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKAD------- 1131 (1666)
T ss_pred HHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhcC-------
Confidence 111222222221 22334444444443332 3479999999999999999999887662
Q ss_pred CCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 009663 351 RPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLN 430 (529)
Q Consensus 351 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 430 (529)
|...|.-.+..+.+.|.+++-.+++..++++ .-.|.. =+.|+-+|++.++..+.++++. .|+......+.+
T Consensus 1132 --Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1132 --DPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGD 1202 (1666)
T ss_pred --CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhH
Confidence 5567999999999999999999999988876 445544 4578999999999988777663 588888889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
-|...|.++.|.-+|. +.+-|..|+..+...|.+..|.+.-++.
T Consensus 1203 rcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999998888877 4455667777777777777776554443
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=1.3e-07 Score=76.33 Aligned_cols=94 Identities=9% Similarity=-0.092 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++.+++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 334555666666666666666665 3344 45566666666666667777777777776666666666666666666667
Q ss_pred CHHHHHHHHHHHhhCC
Q 009663 471 KWDEVRKVRKMLKDRN 486 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~~ 486 (529)
++++|+..++...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777776666665544
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.2e-05 Score=72.59 Aligned_cols=235 Identities=14% Similarity=0.073 Sum_probs=164.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHH----
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNA---- 290 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 290 (529)
...+..+..+..+++.|++.+..... +.-+..-++....++...|.+..+...-+...+.|-. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~e-----l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~ 300 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALE-----LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA 300 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh-----HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH
Confidence 55677788888899999999998873 3534444555566788889888888877777766643 1222333
Q ss_pred ---HHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHHhC
Q 009663 291 ---LIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV-TFISLLNACTH 366 (529)
Q Consensus 291 ---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~~~~~ 366 (529)
+..+|.+.++++.++..|.+....... -....+....+++........ -+.|... -...-...+.+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a-----~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKA-----YINPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHH-----hhChhHHHHHHHHHHHHHh
Confidence 334566677888898888774322111 112223344455555555442 2334331 12223556778
Q ss_pred CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
.|++..|...|.++++. .| |...|....-+|.+.|.+..|++-.+.. ...|+ ...|..-..++....+++.|.+
T Consensus 371 ~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred ccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999865 46 6889999999999999999999887776 45554 4556556667777889999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 444 AVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 444 ~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
.|.+.++.+|++..+...+.++...
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999998888888887764
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=3e-07 Score=74.26 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=101.9
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 336 ICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 336 ~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
..++++..+ +.|+. +..+...+...|++++|...|+.+.. +.| +...|..+..++.+.|++++|...|+
T Consensus 13 ~~~~~~al~-----~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 13 EDILKQLLS-----VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHHH-----cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456666643 44553 45567778889999999999999884 456 68889999999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 415 GM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 415 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
+. ...| +...+..+..++...|++++|+..|+++++..|+++..+...+.+..
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 98 5555 68889999999999999999999999999999999999988776654
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=2.7e-06 Score=82.31 Aligned_cols=220 Identities=19% Similarity=0.177 Sum_probs=169.5
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLL 361 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~ 361 (529)
+|--..-..+...+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+-. .-+|+...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~l-----ek~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQEL-----EKDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHh-----cCCCcchhHHHhh
Confidence 3444455678889999999999999998754 67778999999999999999988875 2678888999988
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 439 (529)
...-..--+++|.++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|..+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 8887777788998888776432 1112222334578999999999865 6566 6788988988999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHH
Q 009663 440 FAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIY 519 (529)
Q Consensus 440 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (529)
.|.+.|...+.++|++...|+++..+|.+.|+-.+|...+++..+-+.. +...| .. ...+..+. +..+++.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~--~w~iW---EN--ymlvsvdv--ge~eda~ 607 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ--HWQIW---EN--YMLVSVDV--GEFEDAI 607 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--CCeee---ec--hhhhhhhc--ccHHHHH
Confidence 9999999999999999999999999999999999999999999888743 22233 21 12233333 5567777
Q ss_pred HHHHHHHhc
Q 009663 520 DALESMVAL 528 (529)
Q Consensus 520 ~~~~~~~~~ 528 (529)
..+.+|.+.
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 777776553
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=9.1e-07 Score=83.29 Aligned_cols=249 Identities=14% Similarity=0.056 Sum_probs=170.9
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG 299 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 299 (529)
.-+.+.|+..+|.-.|+...+. -+-+...|..|.......++-..|+..+.+.++..+. +..+.-.|.-.|...|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh
Confidence 3456677777777777766543 2224456666666666777777777777777776543 5556666777777777
Q ss_pred CHHHHHHHHhhcCCCChh-HHHHHH---------HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCc
Q 009663 300 SLKEARRAFDRNSKKRLT-SWNSMI---------NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGL 369 (529)
Q Consensus 300 ~~~~A~~~~~~~~~~~~~-~~~~li---------~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~ 369 (529)
.-..|.+.++.-...... .|.... ..+..........++|-++.. ..+..+|......|.-.|--.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~--~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAAR--QLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHH--hCCCCCChhHHhhhHHHHhcchH
Confidence 777777777642110000 000000 111112223445556655543 15545677777777777888999
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 370 VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 370 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
+++|...|+.+. .++| |...|+.|.-.++...+.++|+.-|.+. .+.|. +.+...|.-+|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998 5578 6889999999999999999999999998 78886 5677788889999999999999999
Q ss_pred HHHhcCCC----------CchhHHHHHHHHHhcCCHHHHHHH
Q 009663 447 KLIEIDPN----------NGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 447 ~~~~~~p~----------~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
.++.+.+. +..+|..|-.++.-+++.|-+.+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 99886644 124777777777777777755443
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=2.7e-06 Score=86.16 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHH
Q 009663 316 LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHY 393 (529)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~ 393 (529)
...+..|.....+.|+.++|+.+++...+ +.|+. .....+...+.+.+++++|...+++.... .| +....
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~-----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~ 157 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ-----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREI 157 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh-----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHH
Confidence 44556666666666666666666666633 44433 33445555666666666666666666532 44 34555
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
..+..++.+.|++++|..+|++. ...|+ ..++..+..++...|+.++|...|+++.+..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55666666666666666666665 22332 5566666666666666666666666666643
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=0.0012 Score=71.76 Aligned_cols=333 Identities=11% Similarity=0.032 Sum_probs=208.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCCCChh--hHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhC
Q 009663 152 ETALVNSYSRSGNDIGIARKLFDEMSDRNVV--SWTAMISGYTRVGDIKNAASLFDSMPD----RDVPAWNSVIAGCTQN 225 (529)
Q Consensus 152 ~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 225 (529)
+......+...| ++.+|..........+.. ............|+++.+...++.+.. .++.........+...
T Consensus 344 h~raa~~~~~~g-~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQG-FPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 344455667777 788777766666543221 112223345567888888888887742 2333334445566788
Q ss_pred CChhHHHHHHHHhhhcccCCC---CCCHH--HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCc----cHHHHHHHHHH
Q 009663 226 GLFSDAISFFRRMGMEVSDNI---RPNQV--TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDS----FISNALIDMYG 296 (529)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~---~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 296 (529)
|+++++...+........... .+... ....+...+...|+++.|...++...+.-...+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999987754211111 11111 1222233456889999999999988764222121 23455666778
Q ss_pred hCCCHHHHHHHHhhcCC-------CC--hhHHHHHHHHHHHcCChhHHHHHHHHHhhccc-CCCC--C-CHHHHHHHHHH
Q 009663 297 KCGSLKEARRAFDRNSK-------KR--LTSWNSMINSFALHGQSENSICVFEEMMRCQD-HNIR--P-DGVTFISLLNA 363 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--p-~~~~~~~l~~~ 363 (529)
..|++++|...+++... .. ..++..+...+...|++++|...+++...... .+.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 89999999999876542 11 12455667788899999999999888765211 1211 1 22334455556
Q ss_pred HhCCCcHHHHHHHHHHhHHhcC-CCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHH-----HHHHHH
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYR-IEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM----KIEPDEVVW-----GSLLNG 431 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~-----~~l~~~ 431 (529)
+...|++++|...+.+...... ..+ ....+..+...+...|+.++|.+.+++. ........+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 6778999999999988754211 112 2344555677788999999999888776 111111111 112234
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchh----HHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNGGY----GIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+...|+.+.|..++.......+..... +..++.++...|++++|...+++....
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456889999999987766533222221 456788899999999999999988754
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=3.1e-05 Score=66.11 Aligned_cols=244 Identities=14% Similarity=0.075 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHhhCC-C-CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHH-H
Q 009663 194 VGDIKNAASLFDSMP-D-RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLG-K 270 (529)
Q Consensus 194 ~g~~~~A~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~ 270 (529)
.|++..++..-.... . .++..-..+.++|...|.+...+.-... +-.|....+..+.......++.+.- .
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~-------~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKE-------GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccc-------ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 344444444333322 1 2333333455666666665443322211 2233333333333333333333222 2
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 271 VIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
++.+.+......-+......-...|+..|++++|++...... +....-.=+..+.+..+.+-|...+++|.+ +
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~-----i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ-----I 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----c
Confidence 233333333332222233333445556666666666655422 111222222334445555555555555543 1
Q ss_pred CCCHHHHHHHHHHHh----CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHH
Q 009663 351 RPDGVTFISLLNACT----HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVV 424 (529)
Q Consensus 351 ~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~ 424 (529)
.+..|.+.|..++. ..+.+..|.-+|+++.+ ...|++.+.+...-++...|++++|..++++. +...++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 13334444443332 22345555555555543 23455555555555555555555555555554 22234444
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHhcCCC
Q 009663 425 WGSLLNGCKIYGRTDF-AEFAVKKLIEIDPN 454 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~ 454 (529)
...++..-...|...+ ..+.+.+.+...|.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 4444444444443322 23444444444443
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8.5e-06 Score=69.43 Aligned_cols=245 Identities=13% Similarity=0.047 Sum_probs=161.1
Q ss_pred HHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC
Q 009663 219 IAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC 298 (529)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (529)
++-+.-.|++..++..-.... +.+.+...-..+.++|...|.+.....- +.. |-.|.......+......-
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~-----~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFS-----SSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELE 85 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhc-----cccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCc
Confidence 345556788888877766654 2224444444555666666654433221 111 1123333333334333334
Q ss_pred CCHHHHH-HHHhhcCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 299 GSLKEAR-RAFDRNSKK----RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 299 g~~~~A~-~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
++.+.-. ++.+.+..+ +......-...|+..|++++|++..+.. . +......=...+.+..+.+-|
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~----~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----E----NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----c----hHHHHHHHHHHHHHHHHHHHH
Confidence 4433332 333333332 2223333346788999999999998873 2 222333334456677889999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009663 374 RAYFKLMTKTYRIEPQIEHYGCLVDLLG----RAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKK 447 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 447 (529)
.+.++.|.+ + .+..+.+.|..++. ..+.+.+|.-+|++| +..|+..+.+-...++...|++++|..+++.
T Consensus 157 ~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 157 EKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 999999973 2 34556666666665 456799999999999 5889999999999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCHHHHH-HHHHHHhhC
Q 009663 448 LIEIDPNNGGYGIMLANIYGELGKWDEVR-KVRKMLKDR 485 (529)
Q Consensus 448 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 485 (529)
++..+++++.+...++.+-...|+-.++. +.+.+++..
T Consensus 233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999999999999998888888876554 456666544
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=4.6e-06 Score=80.79 Aligned_cols=218 Identities=12% Similarity=0.039 Sum_probs=173.7
Q ss_pred CCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHH
Q 009663 247 RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRLTSWNSMIN 324 (529)
Q Consensus 247 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 324 (529)
+|-...-..+...+.+.|-...|..++++.. .+...+.+|...|+..+|..+..+-.+ ++...|..+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3444444556677888888888988888653 456688999999999999998866543 56668888888
Q ss_pred HHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 009663 325 SFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA 403 (529)
Q Consensus 325 ~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 403 (529)
.....--+++|.++.+.... + .-..+.....+.++++++.+.|+.-.+ +.| ...+|-.+.-+..+.
T Consensus 466 v~~d~s~yEkawElsn~~sa----r------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISA----R------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQL 532 (777)
T ss_pred hccChHHHHHHHHHhhhhhH----H------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHH
Confidence 87777778899988887642 1 112222233447899999999998774 344 577888888899999
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 404 GRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 404 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
++++.|.+.|... ...|| ...||.+-.+|.+.|+-.+|...+.++.+.+-++..+|.+..-...+-|.+++|.+.+.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999887 56775 678999999999999999999999999998888899999988889999999999999999
Q ss_pred HhhCC
Q 009663 482 LKDRN 486 (529)
Q Consensus 482 ~~~~~ 486 (529)
+.+..
T Consensus 613 ll~~~ 617 (777)
T KOG1128|consen 613 LLDLR 617 (777)
T ss_pred HHHhh
Confidence 87554
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=9.2e-06 Score=69.30 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=115.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDL 399 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 399 (529)
..+-..+...|+-+....+..... .....|.......+....+.|++..|...+.+... .-++|...|+.+.-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~----~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA----IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh----ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHH
Confidence 555666777778777777777653 22333444455577777788888888888888763 335578888888888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 009663 400 LGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
|.+.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|..++..+....+.+..+...++.+....|++++|..
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 88888888888877776 4444 566777788788888888888888888888777788888888888888888888887
Q ss_pred HHHH
Q 009663 478 VRKM 481 (529)
Q Consensus 478 ~~~~ 481 (529)
+..+
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 6543
No 117
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=1.4e-05 Score=73.45 Aligned_cols=212 Identities=11% Similarity=-0.018 Sum_probs=121.8
Q ss_pred cCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC-CHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCCh--hHHH
Q 009663 263 TGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG-SLKEARRAFDRNSKK---RLTSWNSMINSFALHGQS--ENSI 336 (529)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~--~~a~ 336 (529)
.++.++|+.+..++++..+. +..+|+....++...| ++++++..++++.+. +..+|+.....+.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 34445555555555544322 2223333333444444 355666665554332 233444443334444442 4566
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc---CCh----HH
Q 009663 337 CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA---GRF----EE 408 (529)
Q Consensus 337 ~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~----~~ 408 (529)
.+++++.+ .-+-|...|....-++...|+++++++.++++.+. .| +...|+.....+.+. |.. ++
T Consensus 129 ~~~~kal~----~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 129 EFTRKILS----LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHH----hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHH
Confidence 66666653 12235566666666666677777777777777743 23 455565555544443 222 35
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC------------
Q 009663 409 ALEVVKGM-KIEP-DEVVWGSLLNGCKIY----GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG------------ 470 (529)
Q Consensus 409 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------ 470 (529)
.+++..++ ...| |...|+.+...+... ++..+|...+.++...+|+++.+...|+..|....
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 55665444 4455 566777777766652 44567888888888888888888888988887632
Q ss_pred ------CHHHHHHHHHHH
Q 009663 471 ------KWDEVRKVRKML 482 (529)
Q Consensus 471 ------~~~~a~~~~~~~ 482 (529)
..++|..+++.+
T Consensus 282 ~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 282 LAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccccHHHHHHHHHHH
Confidence 236788888877
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.61 E-value=0.00057 Score=64.47 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGC 395 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 395 (529)
.+|...|+.-.+..-...|..+|.++.+ .+..+ ....+++++..+|. ++.+-|.++|+.-.+.+|- ++.--..
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~---~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~ 440 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKARE---DKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLK 440 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHH
Confidence 3788888888889999999999999988 77777 67778888887774 8899999999998876543 3445567
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 396 LVDLLGRAGRFEEALEVVKGM---KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
.++.+...|+-..|..+|++. .+.|+ ..+|..++..-..-|+...+.++-++....-|
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 788888999999999999998 23443 57899999999999999999999888877555
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.55 E-value=3.3e-05 Score=80.25 Aligned_cols=242 Identities=12% Similarity=0.128 Sum_probs=177.3
Q ss_pred hhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHh-CCCC---CccHHHHHHHHHHhCCCHHH
Q 009663 228 FSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN-GLDL---DSFISNALIDMYGKCGSLKE 303 (529)
Q Consensus 228 ~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~ 303 (529)
.+.|.++-+.++ +-+-+...|-..+.-....++.++|+++.++++.. ++.- -..+|.++++.-..-|.-+.
T Consensus 1441 pesaeDferlvr-----ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1441 PESAEDFERLVR-----SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CcCHHHHHHHHh-----cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 445555555554 22444556777777788889999999999888754 2211 23367777777777788888
Q ss_pred HHHHHhhcCCC-C-hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 304 ARRAFDRNSKK-R-LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 304 A~~~~~~~~~~-~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
..++|++..+- | ...|..|...|.+.+.+++|.++++.|.+ .+.-....|...+..+.+.++-++|..++.++.
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~K----KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLK----KFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHH----HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88999988764 3 34889999999999999999999999985 344556788899999999999999999999988
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCch
Q 009663 382 KTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNNGG 457 (529)
Q Consensus 382 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 457 (529)
+...-.-........++.-.+.|+.+.+..+|+.. ..+-....|+.+++.-.++|+.+.+..+|+++..+. |....
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 64221224667777788888999999999999987 333357789999999999999999999999999865 44444
Q ss_pred hH-HHHHHHHHhcCCHHHHHHH
Q 009663 458 YG-IMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 458 ~~-~~l~~~~~~~g~~~~a~~~ 478 (529)
.+ -.....-...|+-+.+..+
T Consensus 1672 fffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1672 FFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHHHhcCchhhHHHH
Confidence 33 3333333344665544443
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.54 E-value=0.00036 Score=65.79 Aligned_cols=185 Identities=9% Similarity=0.074 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHH---hCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNAC---THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEE 408 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 408 (529)
.+++..++++... .-..-+..+|..+...- ...+..+.....++++.....+.|+ -+|..++..-.+..-+..
T Consensus 309 t~e~~~~yEr~I~---~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 309 TDEAASIYERAIE---GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHH
Confidence 3556666666553 22222333443333221 1122355666677777655444454 467778888888888999
Q ss_pred HHHHHHhC---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 409 ALEVVKGM---KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 409 A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
|..+|.++ +..+ ++.+..+++..++ .++.+-|.++|+-.+...++++......+..+...|+-..+..+|++...
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 99999888 3334 5667777777665 67888999999999998898888888888888999999999999999988
Q ss_pred CCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHHHh
Q 009663 485 RNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVA 527 (529)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (529)
.++.++... ..-..|+.-..+-|+...++++-+|+..
T Consensus 464 s~l~~~ks~------~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 464 SVLSADKSK------EIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ccCChhhhH------HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 865443321 1112344555566777778777777653
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=8.9e-06 Score=69.55 Aligned_cols=153 Identities=11% Similarity=0.134 Sum_probs=111.2
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
+..|...|+++.+....+.+..+. ..+...++.+++...+++..+ .-+.+...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~----~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR----ANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHCCCHH
Confidence 446677777777655443322211 011125566777777777753 33456778888889999999999
Q ss_pred HHHHHHHHhHHhcCCCC-ChhHHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 372 QGRAYFKLMTKTYRIEP-QIEHYGCLVDL-LGRAGR--FEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
.|...|++..+ +.| +...+..+..+ +...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|
T Consensus 91 ~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999884 356 57788888876 467777 59999999988 5566 6778888888899999999999999
Q ss_pred HHHHhcCCCCchhH
Q 009663 446 KKLIEIDPNNGGYG 459 (529)
Q Consensus 446 ~~~~~~~p~~~~~~ 459 (529)
+++++..|.+..-+
T Consensus 168 ~~aL~l~~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHhhCCCCccHH
Confidence 99999887654443
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.7e-07 Score=53.77 Aligned_cols=32 Identities=38% Similarity=0.633 Sum_probs=22.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 385 RIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 385 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.51 E-value=2.9e-06 Score=68.24 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=76.9
Q ss_pred CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 386 IEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 386 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
..| +......+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++.+.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 345 3455666677777888888888888776 3344 567777777778888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 463 ANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 463 ~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+.++...|++++|...+++..+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 888888888888888887777654
No 124
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.51 E-value=2e-05 Score=79.08 Aligned_cols=375 Identities=12% Similarity=0.034 Sum_probs=194.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARK 171 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~ 171 (529)
.+...|+..|-+..+.. +.=...|..+...|...-+...|.+.|+...+.+ .-+......+.+.|++.. +++.|..
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~-~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEES-TWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccc-cHHHHHH
Confidence 44566666666655543 2334566677777766667777777777776654 235566677777777777 7777777
Q ss_pred HHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc
Q 009663 172 LFDEMSDRN-----VVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS 243 (529)
Q Consensus 172 ~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (529)
+.-...+.+ ...|-...-.|.+.++...|+.-|+.... .|...|..++.+|...|++..|+++|.+..
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---- 623 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS---- 623 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH----
Confidence 643333311 12233334445666777777777766543 355677788888888888888888887775
Q ss_pred CCCCCCHHHHHHHHH-HhhccCCchHHHHHHHHHHHhC------CCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC----
Q 009663 244 DNIRPNQVTLVCALS-AIGHTGMLQLGKVIHGYVYRNG------LDLDSFISNALIDMYGKCGSLKEARRAFDRNS---- 312 (529)
Q Consensus 244 ~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 312 (529)
.+.|+...-..... ..+..|.+.++...+..+.... ..--..++-.+...+.-.|-..+|..++++-.
T Consensus 624 -~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 624 -LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred -hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45665432222222 2456677777777777665421 11111222222222222333333333332211
Q ss_pred -------CCChhHHHHHHHHH---HHcC--Chh-HHHHHH-HHHhhcccCCCCC--------------------CHHHHH
Q 009663 313 -------KKRLTSWNSMINSF---ALHG--QSE-NSICVF-EEMMRCQDHNIRP--------------------DGVTFI 358 (529)
Q Consensus 313 -------~~~~~~~~~li~~~---~~~~--~~~-~a~~~~-~~m~~~~~~~~~p--------------------~~~~~~ 358 (529)
..+...|-.+-.++ ++.. -+. ....++ .+... .+.-| +..+|.
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~---~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEK---TGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHh---cccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 11111222222111 1111 000 000111 11111 11111 112222
Q ss_pred HHHHHHhC--------CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 009663 359 SLLNACTH--------GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSL 428 (529)
Q Consensus 359 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 428 (529)
.+...|.+ ..+...|...+...++- ...+..+|+.|.-. ...|++.-|...|-+- ..+....+|..+
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 22222221 11223445555544421 11233344444332 4445555555444333 222356667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
...+....+++.|...|.+...++|.+...|...+.+....|+.-++..++.-
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77777788888888888888888888888888777777777877777776654
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.7e-07 Score=53.81 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=26.6
Q ss_pred hCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC
Q 009663 39 LGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT 73 (529)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~ 73 (529)
.|++||..+|+.||.+|++.| ++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G-~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAG-RVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCC-CHHHHHHHHHhCc
Confidence 367788888888888888887 8888888887764
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=1.4e-05 Score=71.29 Aligned_cols=183 Identities=15% Similarity=0.019 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC--CccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---Chh---H
Q 009663 247 RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL--DSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLT---S 318 (529)
Q Consensus 247 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~---~ 318 (529)
......+..+...+...|+++.|...++.+.+..+.. ...++..+..++...|++++|...|+++.+. +.. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3355677778888999999999999999998875421 1246677889999999999999999987543 222 4
Q ss_pred HHHHHHHHHHc--------CChhHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC
Q 009663 319 WNSMINSFALH--------GQSENSICVFEEMMRCQDHNIRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ 389 (529)
Q Consensus 319 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 389 (529)
+..+..++... |+.++|.+.|+.+.. ..|+.. ....+..... . .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~a~~~~~~----~------~~~~~-------- 166 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR-----RYPNSEYAPDAKKRMDY----L------RNRLA-------- 166 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH-----HCCCChhHHHHHHHHHH----H------HHHHH--------
Confidence 55566666665 778999999999864 345432 2222111100 0 00000
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIE---P-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
.....+...|.+.|++++|...+++. ... | ....+..++.++...|++++|...++.+....|
T Consensus 167 -~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 -GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11124566788999999999998887 222 2 356788888999999999999998888877655
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=2.1e-05 Score=67.21 Aligned_cols=136 Identities=19% Similarity=0.144 Sum_probs=112.6
Q ss_pred CCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 009663 350 IRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGS 427 (529)
Q Consensus 350 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 427 (529)
..|+......+-..+...|+-+....+...... ....+......++....+.|++.+|...|.+. .-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 344333225555667777888888777777542 22335667777999999999999999999998 44668999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+..+|.+.|++++|...|.++.++.|+++.+.+.++..|.-.|+.+.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998876654
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.47 E-value=2.4e-06 Score=67.71 Aligned_cols=97 Identities=13% Similarity=0.002 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
....-.+...+...|++++|.++|+-. .+.| +..-|..|..++...|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444555666778999999999999988 5556 67788889999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCC
Q 009663 468 ELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 468 ~~g~~~~a~~~~~~~~~~~ 486 (529)
..|+.+.|.+.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 129
>PLN02789 farnesyltranstransferase
Probab=98.45 E-value=1.5e-05 Score=73.23 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=139.9
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcC-ChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC
Q 009663 291 LIDMYGKCGSLKEARRAFDRNSKKR---LTSWNSMINSFALHG-QSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH 366 (529)
Q Consensus 291 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~ 366 (529)
+-..+...++.++|+..++++.+.+ ..+|+....++...| ++++++..++++.+ . -+.+...|+.....+.+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~---~-npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE---D-NPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH---H-CCcchHHhHHHHHHHHH
Confidence 3444556678889999988776543 346666666677777 67999999999875 2 22344556655444555
Q ss_pred CCc--HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCH
Q 009663 367 GGL--VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY---GRT 438 (529)
Q Consensus 367 ~~~--~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~ 438 (529)
.|. .+++..+++++.+. .| +..+|+....++.+.|+++++++.++++ ...| +...|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 555 36778888888743 55 6888999999999999999999999998 4444 677787777666554 222
Q ss_pred ----HHHHHHHHHHHhcCCCCchhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCc
Q 009663 439 ----DFAEFAVKKLIEIDPNNGGYGIMLANIYGEL----GKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 439 ----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~ 488 (529)
++++....+++..+|++.++|..+..++... ++..+|.+++.+..+.++.
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 5688888899999999999999999998873 4557798888887765543
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=1e-05 Score=75.85 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGC 432 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 432 (529)
.....|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++. ...| +...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33456677777888999999999999854 455 4455888888889999999999887 3344 677777777789
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.+.++++.|+.+.+++.+..|++-..|..|+.+|.+.|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999998885
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=9.7e-05 Score=62.69 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=109.6
Q ss_pred ccCCchHHHHHHHHHHH---hC-CCCCcc-HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHH---HHHHHHHcCChh
Q 009663 262 HTGMLQLGKVIHGYVYR---NG-LDLDSF-ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNS---MINSFALHGQSE 333 (529)
Q Consensus 262 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~ 333 (529)
...+.++..+++..+.. .| ..++.. +|..++-+....|+.+.|..+++++...=+.++.. -...+...|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 34566777777776653 23 233332 34444555556677777777776654321111111 112234456777
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVV 413 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 413 (529)
+|+++++...+ .. +-|..++---+...-..|+.-+|++-+....+ .+..|...|.-+...|...|++++|.-.+
T Consensus 104 ~A~e~y~~lL~---dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 104 EAIEYYESLLE---DD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hHHHHHHHHhc---cC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 77777777753 22 33445555445455556666666666666664 33556777777777777777777777777
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 414 KGM-KIEP-DEVVWGSLLNGCKIYG---RTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 414 ~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
+++ -+.| ++..+..+.+.+.-.| +...|.+.|.+++++.|.+...+..
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 776 3344 4555556665533332 4566677777777776644444433
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.0043 Score=62.39 Aligned_cols=405 Identities=15% Similarity=0.108 Sum_probs=226.1
Q ss_pred ChhHHHHHhhcCC--CCChhHHHHHHHHH--hcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHH
Q 009663 61 NLTYARFIFDHLT--TPNTYLYTAMITAY--ASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMV 136 (529)
Q Consensus 61 ~~~~A~~~~~~~~--~~~~~~~~~ll~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (529)
++..|.+..+.+. .||.. |...+.++ .+. |+.++|..+++.....+ ..|..|...+-..|...+..++|..+
T Consensus 24 qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRL-GKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHh-cCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 6778877777765 45544 33333333 456 88888888888776665 34778888888888888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCCHHH----HHHHHhhCCCCChhhHHHHHHHHHhcC----------CHHHHHH
Q 009663 137 HTQIVKSGFEQYPVVETALVNSYSRSGNDIGI----ARKLFDEMSDRNVVSWTAMISGYTRVG----------DIKNAAS 202 (529)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~----A~~~~~~~~~~~~~~~~~ll~~~~~~g----------~~~~A~~ 202 (529)
++...... |+......+..+|.+.+ ++.+ |.++++...+ +...+-++++.+...- -..-|.+
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~-~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREK-SYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 88887753 45666667777777776 5554 5556664443 3333334444433321 1334556
Q ss_pred HHhhCCCCC--hhh---HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 009663 203 LFDSMPDRD--VPA---WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVY 277 (529)
Q Consensus 203 ~~~~~~~~~--~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 277 (529)
.++.+.+.+ ..+ ...-...+...|++++|++++..-..+ .-.+-+...-+.-+..+...+++.+..++-.++.
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~--~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE--KLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 666655443 111 122234456678888888888543322 1223344444455666778888888888888888
Q ss_pred HhCCCCCccHHHHHHHHHHh----------------CCCHHHHHHHHhhcCCC-ChhHHHHHHHHHH---HcCChhHHHH
Q 009663 278 RNGLDLDSFISNALIDMYGK----------------CGSLKEARRAFDRNSKK-RLTSWNSMINSFA---LHGQSENSIC 337 (529)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~~~~~~a~~ 337 (529)
..|... |...++.+.+ .+..+...+...+.... --.+|-+-+.++. ..|+.+++.-
T Consensus 254 ~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 877532 3333332211 11222222222222211 1123444444443 3477777655
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh-------HHHHHHHHHHhcCC-----
Q 009663 338 VFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE-------HYGCLVDLLGRAGR----- 405 (529)
Q Consensus 338 ~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~----- 405 (529)
.|-+- -|-.|- |..=+..|...=..++...++..... ..++.. -+...+..-.-.|.
T Consensus 330 ~y~~k-----fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ 398 (932)
T KOG2053|consen 330 YYFKK-----FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP 398 (932)
T ss_pred HHHHH-----hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCC
Confidence 44332 333331 22222233322233444444444431 122211 01122222222232
Q ss_pred hHHHHHHHHhC------C------CCCC---------HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCchhHHH
Q 009663 406 FEEALEVVKGM------K------IEPD---------EVVWGSLLNGCKIYGRT---DFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 406 ~~~A~~~~~~~------~------~~p~---------~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
-+....++.+. | +-|. ..+.+.|++.|.+.++. -+|+-+++.....+|.|..+-..
T Consensus 399 ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLl 478 (932)
T KOG2053|consen 399 ADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLL 478 (932)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 12222222221 1 1222 23456777888887764 46788888888889989999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCccC
Q 009663 462 LANIYGELGKWDEVRKVRKMLKDRNAYKT 490 (529)
Q Consensus 462 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 490 (529)
++.+|.-.|-+..|.+.++.+--+++..+
T Consensus 479 LiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 479 LIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 99999999999999999988866666543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.0002 Score=66.75 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=79.2
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAE 442 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~ 442 (529)
..|+++.|+..++.+.+. .| |+..+....+.+.+.|+.++|.+.++++ ...|+ ...+..+..++.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 457777777777777643 44 4555556667777777777777777776 45565 555666677777777777777
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 443 FAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
..+++....+|+++..|..|+.+|...|+..++.....+..
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77777777777777777777777777766666665555443
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00036 Score=59.38 Aligned_cols=189 Identities=13% Similarity=0.085 Sum_probs=140.7
Q ss_pred hCCChhHHHHHHHHhhhcccCC-CCCCHHH-HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCH
Q 009663 224 QNGLFSDAISFFRRMGMEVSDN-IRPNQVT-LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSL 301 (529)
Q Consensus 224 ~~g~~~~A~~~~~~m~~~~~~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 301 (529)
...+.++.++++.++......| ..|+..+ |..++-+....|+.+.|...++.+.+.- +-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 3457788888888886543335 5666654 4456667788899999999999988775 22333333333345568999
Q ss_pred HHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009663 302 KEARRAFDRNSKKR---LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFK 378 (529)
Q Consensus 302 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 378 (529)
++|+++|+.+.+.| .+++..-+...-..|+.-+|++-+.... ..+.-|...|.-+...|...|++++|.-.++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL----~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYL----DKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHH----HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999987654 4577777777778888889998888876 4567789999999999999999999999999
Q ss_pred HhHHhcCCCC-ChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC
Q 009663 379 LMTKTYRIEP-QIEHYGCLVDLLGRAG---RFEEALEVVKGM-KIEP 420 (529)
Q Consensus 379 ~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p 420 (529)
++. -+.| ++..+..+.+.+--.| +.+-|.++|.+. ++.|
T Consensus 179 E~l---l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 179 ELL---LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 998 4467 5666777777654444 566788888876 6555
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.30 E-value=0.0006 Score=70.41 Aligned_cols=55 Identities=13% Similarity=-0.010 Sum_probs=23.6
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHH
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAF 308 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (529)
.+..+..+|-+.|+.+++..+++++++..+ -++.+.|.+...|... ++++|++++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 333444444444444444444444444432 2344444444444444 444444443
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00021 Score=66.67 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYG 394 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 394 (529)
..+.-....+...|..++|+..++.+.. ..| |..........+...|+..+|.+.++++.. ..|+ ....-
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~ 378 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQL 378 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHH
Confidence 3444444555667888888888888753 344 444445556677888888888888888874 3665 55667
Q ss_pred HHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 395 CLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
.+..+|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++..... ..|.-.|++
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~ 441 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRL 441 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCH
Confidence 7788888888888888888887 334478888888888888888777766543 456667777
Q ss_pred HHHHHHHHHHhhCC
Q 009663 473 DEVRKVRKMLKDRN 486 (529)
Q Consensus 473 ~~a~~~~~~~~~~~ 486 (529)
++|+..+....++.
T Consensus 442 ~~A~~~l~~A~~~~ 455 (484)
T COG4783 442 EQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHhc
Confidence 88877777776664
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00015 Score=74.65 Aligned_cols=232 Identities=11% Similarity=0.092 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHH
Q 009663 180 NVVSWTAMISGYTRVGDIKNAASLFDSMPD--R-DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCA 256 (529)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~l 256 (529)
+...|..|+..+...+++++|.++.+...+ | .+..|..+...+.+.++.+++.-+ .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l----------------- 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI----------------- 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh-----------------
Confidence 445666677777777777777777665433 2 223344444455555555544444 222
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChh
Q 009663 257 LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSE 333 (529)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 333 (529)
.......++..+..+...+.+.+ -+..++..+..+|-+.|+.++|..+|+++.+- |+.+.|.+...|... +.+
T Consensus 91 -~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 -DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 11222223333333333444332 23346666777777778888887777776543 455777777777777 777
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHH
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEV 412 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 412 (529)
+|++++.++.. . +...+++..+..+|.++... .| +...+..+.+....
T Consensus 167 KA~~m~~KAV~---~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~---------- 215 (906)
T PRK14720 167 KAITYLKKAIY---R---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLG---------- 215 (906)
T ss_pred HHHHHHHHHHH---H---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHh----------
Confidence 77777777654 1 44455677777777777632 33 23332222221111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 413 VKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 413 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
..+...-..++..+-..|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus 216 --~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 --HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred --hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11223345556666677888889999999999999999999888888888876
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=5.3e-05 Score=61.48 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE----VVWGSLLN 430 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~ 430 (529)
|..++..+. .++...+...++.+.+.++-.| .......+...+...|++++|...|+.. ...|+. .....+..
T Consensus 15 y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 444444443 5677777777777776532221 1233344556677777777777777776 222332 23344556
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.+...|++++|+..++.... .+-.+..+...+.+|.+.|++++|+..|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777888888877765322 2335567777778888888888888777653
No 139
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.23 E-value=2e-06 Score=62.29 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=54.7
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 009663 403 AGRFEEALEVVKGM-KIEP---DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 403 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777776 2223 445555677788888888888888888 666666667777778888888888888888
Q ss_pred HHH
Q 009663 479 RKM 481 (529)
Q Consensus 479 ~~~ 481 (529)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=5.8e-05 Score=60.56 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=87.8
Q ss_pred CCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 009663 350 IRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWG 426 (529)
Q Consensus 350 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 426 (529)
..|+ ......+...+...|++++|...++.+... .+.+...+..+...+...|++++|..+++.. ...| +...+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 4443 344556677788899999999999998753 1336788889999999999999999999887 4455 577888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.+...+...|++++|...++++.+.+|++.....
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 8888999999999999999999999997766443
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=1.3e-05 Score=69.77 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=89.9
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 440 (529)
+.+.+++++|...|.+++ .+.| |+..|..-..+|.+.|.++.|.+-.+.. .+.|. ...|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456789999999999988 5577 6777888899999999999999888877 66774 6789999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWD 473 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 473 (529)
|++.|+++++++|++.++...|-.+-.+.+..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988888877666555554
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=4.8e-05 Score=71.47 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH 366 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~ 366 (529)
....|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..+ ..+-+......-...|.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~----~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK----ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHh
Confidence 3345666667778899999999988887777777788888888888899999888864 233355566666677888
Q ss_pred CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGMKIEP 420 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 420 (529)
.++++.|..+.+++. ...| +..+|..|..+|.+.|+++.|+..++.++..|
T Consensus 247 k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 899999999999988 4467 46789999999999999999999999885443
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.18 E-value=3.2e-05 Score=60.47 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN---GGYGIMLAN 464 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 464 (529)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++.+.|++++|...++++....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555544 11221 2334445555555555555555555555555443 334555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 009663 465 IYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 465 ~~~~~g~~~~a~~~~~~~~~~ 485 (529)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.17 E-value=7.1e-06 Score=56.84 Aligned_cols=65 Identities=25% Similarity=0.188 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-CHHHHHHHHHHHhhC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG-KWDEVRKVRKMLKDR 485 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 485 (529)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.++...| ++++|+..+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999 799999999988654
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.14 E-value=3.5e-05 Score=57.21 Aligned_cols=94 Identities=23% Similarity=0.300 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
+..+...+...|++++|..++++. ...| +...+..+...+...|++++|.+.++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888876 4444 34667777788888899999999999998888888888888888899999
Q ss_pred CHHHHHHHHHHHhhCC
Q 009663 471 KWDEVRKVRKMLKDRN 486 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~~ 486 (529)
++++|...++...+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999998888876543
No 146
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.13 E-value=0.00012 Score=74.47 Aligned_cols=141 Identities=11% Similarity=0.075 Sum_probs=99.9
Q ss_pred CCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchH
Q 009663 41 QSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIY 117 (529)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 117 (529)
++.++..+-.|.....+.| .+++|+.+++... +.+...+..+...+.+. +++++|+..+++..+.. +.+....
T Consensus 82 ~~~~~~~~~~La~i~~~~g-~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~~--p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAH-RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-QGIEAGRAEIELYFSGG--SSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhcC--CCCHHHH
Confidence 4455666666777777777 8888888887765 34455666677777777 88888888888887775 5566666
Q ss_pred HHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---CChhhHHHH
Q 009663 118 PHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD---RNVVSWTAM 187 (529)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~l 187 (529)
..+..++.+.|++++|..+|+++...+ +-+..++..+..++...| +.++|...|++..+ +....|+..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G-~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRG-ALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 777777788888888888888887743 335677777788888888 88888888877754 444444443
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.09 E-value=9.3e-05 Score=57.78 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=77.2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLL 429 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 429 (529)
++..+...+...|++++|...|+.+.+...-.+ ....+..+..++.+.|++++|...|+.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455666677778888888888888875421111 1345666888888888888888888877 33333 45677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.++...|++++|...++++.+..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 8888899999999999999999987765444
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=0.00026 Score=57.48 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC---HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC--hhHH
Q 009663 319 WNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD---GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ--IEHY 393 (529)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~ 393 (529)
|..++..+ ..++...+...++.+.. . .+.+ ....-.+...+...|++++|...|+.+... .-.|+ ....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~---~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~ 88 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAK---D-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLAR 88 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHH---H-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHH
Confidence 44444444 47888888888888864 2 2222 223334556777889999999999998865 32222 2344
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGMK-IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
..|...+...|++++|+..++... -......+....+.+.+.|++++|...|+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 557788888999999999998763 2335566777788899999999999998875
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.06 E-value=1.4e-05 Score=54.59 Aligned_cols=60 Identities=22% Similarity=0.209 Sum_probs=50.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+...+...|++++|+..|+++++..|+++.++..++.++...|++++|...++++.+...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456678889999999999999999999999999999999999999999999988876543
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00012 Score=64.36 Aligned_cols=109 Identities=22% Similarity=0.197 Sum_probs=92.8
Q ss_pred CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHhcCCCCchhHH
Q 009663 387 EP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY-G--RTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 387 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.| |...|..|...|...|+.+.|..-|.+. .+.| ++..+..+..++... | ...++..++++++..+|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 7999999999999999999999999988 4444 677777777774432 3 467899999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccE
Q 009663 461 MLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSW 495 (529)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 495 (529)
.|+..+...|++.+|...|+.|.+.....+|..+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 99999999999999999999999998766665544
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=8.9e-05 Score=69.95 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=90.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYG 436 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 436 (529)
-...+...|+++.|+..|+++.+. .| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345566789999999999999854 55 5778889999999999999999999998 5566 5778888899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
++++|+..|+++++++|+++.+...+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888776654443
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=0.00015 Score=68.38 Aligned_cols=102 Identities=8% Similarity=0.067 Sum_probs=79.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 009663 321 SMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDL 399 (529)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 399 (529)
.....+...|++++|+..|+++. .--+-+...|..+..++...|++++|...++++.. +.| +...|..+..+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al----~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAI----DLDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHH
Confidence 34566778899999999999984 43333566777888889999999999999999984 356 57788889999
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 009663 400 LGRAGRFEEALEVVKGM-KIEPDEVVWGSLL 429 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 429 (529)
|...|++++|...|++. .+.|+.......+
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999987 6667654444443
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.94 E-value=1.7e-05 Score=46.16 Aligned_cols=33 Identities=24% Similarity=0.641 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCC
Q 009663 79 LYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPN 113 (529)
Q Consensus 79 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 113 (529)
+||.+|.+|++. |++++|.++|++|.+.|+ .||
T Consensus 2 ~~n~li~~~~~~-~~~~~a~~~~~~M~~~g~-~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKA-GRVEEALELFKEMLERGI-EPD 34 (35)
T ss_pred cHHHHHHHHHHC-CCHHHHHHHHHHHHHcCC-CCC
Confidence 688888888888 888888888888888887 776
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.92 E-value=0.00027 Score=59.30 Aligned_cols=96 Identities=21% Similarity=0.120 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
...+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|+..++++.+..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445667777778888888888888776 33332 3567777888888899999999999999988888888888888
Q ss_pred HHHhcCC--------------HHHHHHHHHHHhhC
Q 009663 465 IYGELGK--------------WDEVRKVRKMLKDR 485 (529)
Q Consensus 465 ~~~~~g~--------------~~~a~~~~~~~~~~ 485 (529)
++...|+ +++|.+++++....
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 8887776 45555555555443
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.91 E-value=0.00016 Score=60.48 Aligned_cols=94 Identities=16% Similarity=-0.046 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
....|..+...+...|++++|+..|++. ...|+ ..++..+...+...|++++|+..++++.++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777888888899999999999887 33333 357888889999999999999999999999999888888888
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 009663 464 NIYG-------ELGKWDEVRKVRKML 482 (529)
Q Consensus 464 ~~~~-------~~g~~~~a~~~~~~~ 482 (529)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666554
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.87 E-value=3e-05 Score=53.47 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=45.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
...|++++|++.|+++...+|++..+...++.+|.+.|++++|..+++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888899999998888888888888888888899999999888877765543
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=6.5e-05 Score=65.55 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=78.1
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 009663 399 LLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
-..+.+++++|+..|.+. .+.| |.+.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 356789999999999987 7777 56666777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC
Q 009663 477 KVRKMLKDRN 486 (529)
Q Consensus 477 ~~~~~~~~~~ 486 (529)
+.|++..+-.
T Consensus 170 ~aykKaLeld 179 (304)
T KOG0553|consen 170 EAYKKALELD 179 (304)
T ss_pred HHHHhhhccC
Confidence 9998876543
No 158
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.86 E-value=2.8e-05 Score=44.88 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCC
Q 009663 78 YLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQP 112 (529)
Q Consensus 78 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 112 (529)
.+||.++.++++. |+++.|.++|++|.+.|+ +|
T Consensus 2 ~ty~~ll~a~~~~-g~~~~a~~~~~~M~~~gv-~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKA-GDPDAALQLFDEMKEQGV-KP 34 (34)
T ss_pred cHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCC-CC
Confidence 4677777777776 777777777777777665 54
No 159
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=3.2e-05 Score=44.95 Aligned_cols=33 Identities=30% Similarity=0.719 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD 353 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~ 353 (529)
+|+++|.+|++.|++++|.++|++|.+ .|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~---~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE---RGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCC
Confidence 678888888888888888888888877 787776
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.82 E-value=0.0014 Score=59.72 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCL 396 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 396 (529)
.+|..++...-+.+..+.|..+|.++.+ ...+........+++..+ ..++.+.|..+|+...+.+ ..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKF--PSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHH--TT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 3678888888888889999999999974 122334444444444333 3577888999999999764 5577888999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEPDE----VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYG 459 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 459 (529)
++.+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+..+.+++.+..|++..+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999999999987 333333 5899999999999999999999999999888644333
No 161
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.02 Score=52.82 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKI 434 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 434 (529)
.+.+..+.-|...|+...|.++-.+. + .|+...|...+.+++..++|++-.++... +-.+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555566677788888887776655 3 48889999999999999999998887654 2345778889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 435 YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 435 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.|+..+|..+..++. +..-+..|.+.|++.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888721 134557789999999998775444
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.82 E-value=0.002 Score=52.11 Aligned_cols=135 Identities=16% Similarity=0.081 Sum_probs=100.8
Q ss_pred CCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHH
Q 009663 350 IRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP---DEVVW 425 (529)
Q Consensus 350 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 425 (529)
..|+...-..|..+....|++.+|...|++.... -+..|......+.++....+++.+|...++.+ ..+| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666677888888889999999988888742 23446778888888888889999988888876 2223 23344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
-.+...+...|++.+|...|+.+....| ++......+..+.++|+.+++..-+..+.+.-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4567778888999999999999988887 66666667777888888888877666655443
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.81 E-value=7.9e-05 Score=50.78 Aligned_cols=61 Identities=28% Similarity=0.368 Sum_probs=49.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009663 396 LVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
+...+.+.|++++|.+.|++. ...| +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5556 577788888889999999999999999999999764
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=7.2e-05 Score=54.10 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPD-EVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..+++..+..|. ......+..++...|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 555566666665554311111233344455566666666666666655322222 2333334455566666666666655
Q ss_pred H
Q 009663 447 K 447 (529)
Q Consensus 447 ~ 447 (529)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.79 E-value=9.7e-05 Score=51.76 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=50.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
..+.+.+++++|.+++++++..+|+++..+...+.++.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4677888999999999999999999999999999999999999999999988886654
No 166
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.79 E-value=0.032 Score=51.94 Aligned_cols=404 Identities=11% Similarity=0.087 Sum_probs=223.5
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCCh---hHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009663 30 KQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNT---YLYTAMITAYASQPAHASSAFSLYRDMVR 106 (529)
Q Consensus 30 ~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 106 (529)
.++.+.+.+. |.++..|..||+-+..++ ..++.+++++++..|.+ .+|...+++-... .++.....+|.+.+.
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~-s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~-~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQE-SMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR-KDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhh-hHHHHHHHHHHhcCCCccccHHHHHHhcchhhh-hhHHHHHHHHHHHHh
Confidence 3555555433 668899999999999999 99999999999987654 4788888877777 899999999999988
Q ss_pred CCCCCCCcchHHHHHHhCccCCCch--H----HHHHHHHHHH-hCCCCc-hhHHHHHHHHHH---hcC-----CCHHHHH
Q 009663 107 RGQPQPNQFIYPHVLKSCPDVLESR--G----TKMVHTQIVK-SGFEQY-PVVETALVNSYS---RSG-----NDIGIAR 170 (529)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~--~----a~~~~~~~~~-~g~~~~-~~~~~~l~~~~~---~~g-----~~~~~A~ 170 (529)
... +...|..-+....+....- + .-+.++-... .++.|- ...|+..+..+- ..| .+++...
T Consensus 105 k~l---~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 105 KSL---NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhc---cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 643 4555555555433322111 1 1233333332 234332 234444443321 112 0345555
Q ss_pred HHHhhCCC-C---------ChhhHHHHHHHHHh-------cCCHHHHHHHHhhCCC-------C---Chhh---------
Q 009663 171 KLFDEMSD-R---------NVVSWTAMISGYTR-------VGDIKNAASLFDSMPD-------R---DVPA--------- 214 (529)
Q Consensus 171 ~~~~~~~~-~---------~~~~~~~ll~~~~~-------~g~~~~A~~~~~~~~~-------~---~~~~--------- 214 (529)
+.+.++.. | |-..|..=++-... .--+-.|.+.++++.. . +..+
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 66666654 1 11222211111110 0012233333333221 0 1111
Q ss_pred --HHHHHHHHHhCC-----C-h-hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCc
Q 009663 215 --WNSVIAGCTQNG-----L-F-SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDS 285 (529)
Q Consensus 215 --~~~li~~~~~~g-----~-~-~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 285 (529)
|...|.--...| + . ....-++++...- +.-....|.---.-+...++-+.|+..... |++..+
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y----~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~sp 333 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY----FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSP 333 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCC
Confidence 222222111110 0 0 1111112222110 111122222222222333444444443322 222222
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcC---------------------------------CCChhHHHHHHHHHHHcCCh
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNS---------------------------------KKRLTSWNSMINSFALHGQS 332 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------------------------~~~~~~~~~li~~~~~~~~~ 332 (529)
...-.+...|.-.++.+.....|+... ..-...|...+....+..-.
T Consensus 334 sL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl 413 (660)
T COG5107 334 SLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGL 413 (660)
T ss_pred chheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhH
Confidence 211222333333333333333332110 01122677788888888888
Q ss_pred hHHHHHHHHHhhcccCC-CCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCChHHHH
Q 009663 333 ENSICVFEEMMRCQDHN-IRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE-HYGCLVDLLGRAGRFEEAL 410 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 410 (529)
+.|..+|-+..+ .+ +.++...+++++..++ .|+...|..+|+.-... -||.. --...+..+.+.|+-+.|.
T Consensus 414 ~aaR~~F~k~rk---~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 414 EAARKLFIKLRK---EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred HHHHHHHHHHhc---cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHH
Confidence 999999999987 77 6788888999998777 48889999999987654 34433 3355667778899999999
Q ss_pred HHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 411 EVVKGM--KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 411 ~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.+|+.. .+..+ ..+|..++..-..-|+...+..+-+++.+.-|..
T Consensus 487 aLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 487 ALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 999965 23333 6789999999899999999999999998888864
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=97.78 E-value=0.00043 Score=55.46 Aligned_cols=90 Identities=12% Similarity=0.009 Sum_probs=75.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 009663 396 LVDLLGRAGRFEEALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWD 473 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 473 (529)
...-+-..|++++|..+|+-+ -.. -+..-|..|..++...+++++|+..|..+..++++||......+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999877 223 366677888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 009663 474 EVRKVRKMLKDR 485 (529)
Q Consensus 474 ~a~~~~~~~~~~ 485 (529)
.|...|+...++
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999888773
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.77 E-value=0.0016 Score=64.37 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=79.3
Q ss_pred CCChhHHHHHHHHHHHcC-----ChhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhCC--------CcHHHHHHHHH
Q 009663 313 KKRLTSWNSMINSFALHG-----QSENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTHG--------GLVEQGRAYFK 378 (529)
Q Consensus 313 ~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~ 378 (529)
..+...|...+.+..... +...|..+|+++.+ ..|+. ..+..+..++... .+...+.+..+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345566666666544322 25577777777754 45543 2333322222111 12233333333
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 009663 379 LMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 457 (529)
+.........++..|..+.......|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32221012224456666666666667777777777776 55677777777777777777777777777777777776554
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.015 Score=53.26 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-----CCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHh-cCCCCC-
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNI-----RPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKT-YRIEPQ- 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~- 389 (529)
.+..+...+.+.|++++|.++|++... ... +.+.. .|...+-++...|++..|...+++.... .++..+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~---~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAK---KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH---TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 445567778888888888888888765 222 22222 2333444566678999999999987633 122222
Q ss_pred -hhHHHHHHHHHHh--cCChHHHHHHHHhCCCCCCHHHHHHHH
Q 009663 390 -IEHYGCLVDLLGR--AGRFEEALEVVKGMKIEPDEVVWGSLL 429 (529)
Q Consensus 390 -~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~ 429 (529)
......|+.+|-. ...+++|..-|+.+. +.|.+--..|+
T Consensus 234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l~ 275 (282)
T PF14938_consen 234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHHH
Confidence 3456677777754 345777888887775 45555444443
No 170
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.76 E-value=0.036 Score=51.72 Aligned_cols=441 Identities=13% Similarity=0.061 Sum_probs=220.1
Q ss_pred HHHHccCcchHHHHHHHHHHhCCCC----c-hhHHHHHHHHHhhcCCChhHHHHHhhcCCC--CChhHHHHHHHHH--hc
Q 009663 19 ILERCNHINHLKQLQSFLTTLGQSQ----T-NFYAFKLVRFCTLKLSNLTYARFIFDHLTT--PNTYLYTAMITAY--AS 89 (529)
Q Consensus 19 ~l~~~~~~~~~~~i~~~~~~~~~~~----~-~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~--~~ 89 (529)
+|.--++..+++.|+..+.+..-.. . ...-+.+|++|-.. +++.....+....+ | ...|-.+..++ .+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 4445567777877777776542211 1 23556788888765 56766666655542 3 23344443332 24
Q ss_pred CCCChHHHHHHHHHHHHC--CCCCC-----------CcchHHHHHHhCccCCCchHHHHHHHHHHHhCCC----CchhHH
Q 009663 90 QPAHASSAFSLYRDMVRR--GQPQP-----------NQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFE----QYPVVE 152 (529)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~--~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~ 152 (529)
. +.+.+|++.+...... +..+| |-.-=+..+..+...|.+.+++.+++++...=.+ -+..+|
T Consensus 92 ~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 92 Q-KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred h-hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 5 8888998888777654 22011 1111234556677888888888888877665333 577778
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC--CChhH
Q 009663 153 TALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQN--GLFSD 230 (529)
Q Consensus 153 ~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~ 230 (529)
+.++-.+.++- -.+ +-+.+...=..-|.-++..|.+.=..-++.. +++. .|.......++....-. .+..-
T Consensus 171 d~~vlmlsrSY-fLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 171 DRAVLMLSRSY-FLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHHHhHHH-HHH----HHHhcccccChHHHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccH
Confidence 77766665543 111 1111111111123333333333211111100 0000 01111111111111111 01111
Q ss_pred HHHHHHHhhhcccCCCCCCHHH-HHHHHHHhhccCCchHHHHHHHHHHHhCCCC----CccHHHHHHHHHHhCCCHHHHH
Q 009663 231 AISFFRRMGMEVSDNIRPNQVT-LVCALSAIGHTGMLQLGKVIHGYVYRNGLDL----DSFISNALIDMYGKCGSLKEAR 305 (529)
Q Consensus 231 A~~~~~~m~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~ 305 (529)
-++++..-... -+.|+... ...+.....+ +.+++..+-+.+....+.+ -..++..++....+.++...|.
T Consensus 244 ~mq~l~~We~~---yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 244 LMQILENWENF---YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred HHHHHHHHHhh---ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11222221111 34444322 2223333322 3344433333333221110 1234555666666777777776
Q ss_pred HHHhhcC--CCChh-------HHHHHHHHHH----HcCChhHHHHHHHHHhhcccCCCCCCHH-HHHHHHH---HHhCCC
Q 009663 306 RAFDRNS--KKRLT-------SWNSMINSFA----LHGQSENSICVFEEMMRCQDHNIRPDGV-TFISLLN---ACTHGG 368 (529)
Q Consensus 306 ~~~~~~~--~~~~~-------~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~---~~~~~~ 368 (529)
+.+.-+. +|+.. +-..+-+..+ ..-+...-+.+|+.... .. .|.. ....++. -+-+.|
T Consensus 319 q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs---~D--iDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 319 QYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS---YD--IDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh---hc--ccHHHHHHHHHHHHHHHHhcC
Confidence 6665332 22221 1111112222 11122333445555533 22 2221 1222222 234445
Q ss_pred c-HHHHHHHHHHhHHhcCCCC-ChhHHHHH----HHHHHhcCC---hHHH---HHHHHhCCCCC----CHHHHHHHHHH-
Q 009663 369 L-VEQGRAYFKLMTKTYRIEP-QIEHYGCL----VDLLGRAGR---FEEA---LEVVKGMKIEP----DEVVWGSLLNG- 431 (529)
Q Consensus 369 ~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l----~~~~~~~g~---~~~A---~~~~~~~~~~p----~~~~~~~l~~~- 431 (529)
. -++|..+++.+.+ +.| |..+-+.+ =..|.+.=. +.+- ...+++.|+.| +...-|.+.++
T Consensus 394 ~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 394 QCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred CccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 4 7788888888873 344 34333332 223333222 2222 23334446655 45677778776
Q ss_pred -HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 432 -CKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 432 -~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+..+|++.++.-.-.-+.++.| ++.++..++.++....+++||+.++.++..
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 7789999999999999999999 999999999999999999999999988754
No 171
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.75 E-value=5.8e-05 Score=43.51 Aligned_cols=32 Identities=22% Similarity=0.640 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP 352 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p 352 (529)
+|+.++.+|++.|+++.|.++|++|.+ .|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~---~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE---QGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC
Confidence 555666666666666666666666655 55554
No 172
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0014 Score=59.87 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=90.9
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHH--HHhCCCcHHHHHHHHHHhHHhcCCCCChhHH---HHH--
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLN--ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHY---GCL-- 396 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---~~l-- 396 (529)
.++...|+.++|...-....+ +.++ ..+...++ ++...++.+.+...|++.. .+.|+-..- ...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk-----ld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK-----LDAT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPK 247 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh-----cccc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHH
Confidence 455666777777766655543 1111 11222222 2334566677777776665 334432111 111
Q ss_pred --------HHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 397 --------VDLLGRAGRFEEALEVVKGM-KIEP-----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 397 --------~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
..-..+.|++.+|.+.+.+. ++.| +...|.....+..+.|+..+|+.-.+.+++++|.-...+..-
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 11234667777777777766 4444 344555555566677777777777777777777666667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 463 ANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 463 ~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+.++...++|++|.+-+++..+...
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7777777777777777777765543
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00056 Score=50.48 Aligned_cols=92 Identities=24% Similarity=0.322 Sum_probs=57.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY 435 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 435 (529)
.+...+...|++++|..+++.+.+. .| +...+..+...+...|++++|.+.++.. ...| +..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3444555566667777766666532 23 3355566666666677777777777665 3233 335666666777777
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 009663 436 GRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p 453 (529)
|+++.|...+.++.+..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777776655
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.0016 Score=54.68 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC--HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYG 394 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 394 (529)
.+..+...+...|++++|...|++..+ ....+. ...+..+...+.+.|++++|...+++..+. .| +...+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALK---LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 566666677777777777777777754 322221 245566666667777777777777776632 34 345555
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 395 CLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.+..+|...|+...+..-++.. ...+++|.++++++.+.+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence 5566666666555444322211 112677888888888888865
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.02 Score=50.76 Aligned_cols=77 Identities=12% Similarity=-0.001 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHH----HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCcc
Q 009663 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT----LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSF 286 (529)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 286 (529)
+...+-.....+...|++++|.+.|+.+... .|+... ...+..++.+.++++.|...+++.++..+.....
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 4444444556667788888888888888743 343321 2345566777888888888888877765543333
Q ss_pred HHHHHH
Q 009663 287 ISNALI 292 (529)
Q Consensus 287 ~~~~l~ 292 (529)
-+....
T Consensus 106 ~~a~Y~ 111 (243)
T PRK10866 106 DYVLYM 111 (243)
T ss_pred HHHHHH
Confidence 333333
No 176
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.67 E-value=0.085 Score=53.58 Aligned_cols=191 Identities=11% Similarity=0.086 Sum_probs=130.7
Q ss_pred hhHHHHHHHHH--hhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHH
Q 009663 45 NFYAFKLVRFC--TLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPH 119 (529)
Q Consensus 45 ~~~~~~ll~~~--~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 119 (529)
...|...+.++ .|.| +.++|..+++... ..|..+...+...|... ++.++|..+|+..... .|+..-...
T Consensus 41 n~~~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-~~~d~~~~~Ye~~~~~---~P~eell~~ 115 (932)
T KOG2053|consen 41 NALYAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL-GKLDEAVHLYERANQK---YPSEELLYH 115 (932)
T ss_pred CcHHHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhh---CCcHHHHHH
Confidence 34455555555 3666 8899999998875 35777888888888888 9999999999999887 566888888
Q ss_pred HHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCC---------HHHHHHHHhhCCCCC--hhh---HH
Q 009663 120 VLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGND---------IGIARKLFDEMSDRN--VVS---WT 185 (529)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---------~~~A~~~~~~~~~~~--~~~---~~ 185 (529)
+..+|.+.+++.+-.++--++-+. .+.....+-++++...+.-.. ...|.+.++.+.+.+ ..+ ..
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence 899999999888777666666553 444666666777777665322 233555556555432 111 12
Q ss_pred HHHHHHHhcCCHHHHHHHHhh-----CCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhc
Q 009663 186 AMISGYTRVGDIKNAASLFDS-----MPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGME 241 (529)
Q Consensus 186 ~ll~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (529)
.....+-..|++++|..++.. ....+...-+.-+..+...++|.+..++-.++...
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 223344567889999998832 22334444555667777888888888887777654
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.67 E-value=0.00055 Score=55.31 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=113.3
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 009663 379 LMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--K-IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN- 454 (529)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 454 (529)
+..+...+.|+...--.|..+..+.|+..+|...|++. | +.-|....-.+..+....+++..|...++++-+..|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33333455788888888999999999999999999988 4 4458888888999999999999999999999997776
Q ss_pred -CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHHHhc
Q 009663 455 -NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVAL 528 (529)
Q Consensus 455 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (529)
++.....+++.|...|++.+|...|+...+.-..+...+.+.+ ....+.+......+..++.+++.+-
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e------~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAE------MLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHH------HHHHhcchhHHHHHHHHHHHHHHhc
Confidence 6777888899999999999999999999887666555544421 2233334556677888888877654
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.0014 Score=59.89 Aligned_cols=127 Identities=20% Similarity=0.206 Sum_probs=79.6
Q ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---C-----CCCH
Q 009663 356 TFISLLNACTHG-GLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGMK---I-----EPDE 422 (529)
Q Consensus 356 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~ 422 (529)
.+..+...|... |+++.|.+.|++...-+..... ..++..+...+.+.|++++|.++|++.. . +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455567777 8999999999887653221221 4566778888999999999999998871 1 1112
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHhc--CCHHHHHHHHHHH
Q 009663 423 V-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN-----NGGYGIMLANIYGEL--GKWDEVRKVRKML 482 (529)
Q Consensus 423 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 482 (529)
. .+-..+-++...||+..|...+++....+|. ...+...|+.++... ..+++++.-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 1 2233344566789999999999999988764 233455566665432 4566666666554
No 179
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.078 Score=52.24 Aligned_cols=185 Identities=12% Similarity=0.065 Sum_probs=103.6
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHHhcCCHHHHHH
Q 009663 128 LESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR-----NVVSWTAMISGYTRVGDIKNAAS 202 (529)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~ 202 (529)
|.+++|.+++-+|-++++ .+..+.+.| |+-...++++.-... -..+|+.+...+.....|++|.+
T Consensus 748 g~feeaek~yld~drrDL---------Aielr~klg-DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL---------AIELRKKLG-DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchhhh---------hHHHHHhhh-hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777666644432 345556666 666666666554321 12456677777777777777777
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCC
Q 009663 203 LFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLD 282 (529)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 282 (529)
.+..-.. -...+.++.+..++++-+.+-+. ++.+....-.+...+.+.|.-++|.+.|-+ .+.
T Consensus 818 yY~~~~~-----~e~~~ecly~le~f~~LE~la~~--------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~- 880 (1189)
T KOG2041|consen 818 YYSYCGD-----TENQIECLYRLELFGELEVLART--------LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL- 880 (1189)
T ss_pred HHHhccc-----hHhHHHHHHHHHhhhhHHHHHHh--------cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-
Confidence 7665442 12234555555555554444333 344445555666677777777777665532 111
Q ss_pred CCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHH--------------HHHHHHHHcCChhHHHHHHHHHhh
Q 009663 283 LDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWN--------------SMINSFALHGQSENSICVFEEMMR 344 (529)
Q Consensus 283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~li~~~~~~~~~~~a~~~~~~m~~ 344 (529)
| ...++.|...++|.+|.++-++..-|.+.+.- --|..+.+.|++-.|-+++.+|.+
T Consensus 881 p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 881 P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1 23455666777777777777665544433211 123445566666666666666654
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.59 E-value=0.015 Score=56.47 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH---------
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVV--------- 424 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~--------- 424 (529)
.+...+..-+.+...+.-|.++|..+-. ...+++.....++|++|..+-+.. .+.||...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 3344444444455556666666666531 123566666777777777777766 33333211
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 425 --WGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 425 --~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
|.-.-.+|.+.|+..+|.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 11122345556666677776666654
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.58 E-value=0.06 Score=49.30 Aligned_cols=283 Identities=16% Similarity=0.155 Sum_probs=190.4
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHhhCC---CCChhhHHHHHH--HHHhCCChhHHHHHHHHhhhcccCCCCCCHHH--H
Q 009663 183 SWTAMISGYTR--VGDIKNAASLFDSMP---DRDVPAWNSVIA--GCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT--L 253 (529)
Q Consensus 183 ~~~~ll~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~--~ 253 (529)
-|..|-.++.. .||-..|.++-.+-. ..|....-.++. +-.-.|+++.|.+-|+.|.. .|.... +
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhH
Confidence 35566555543 577777777766543 345555544543 44557999999999999972 233222 2
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhc-----CCCChh--HHHHHHHHH
Q 009663 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRN-----SKKRLT--SWNSMINSF 326 (529)
Q Consensus 254 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~--~~~~li~~~ 326 (529)
..|.-...+.|..+.|..+-+.....-+. -.......+...+..|+|+.|+++.+.- .++++. .--.|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 22222345778888888888877765432 3456778889999999999999999753 344544 333344333
Q ss_pred HH---cCChhHHHHHHHHHhhcccCCCCCCHHH-HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 009663 327 AL---HGQSENSICVFEEMMRCQDHNIRPDGVT-FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR 402 (529)
Q Consensus 327 ~~---~~~~~~a~~~~~~m~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (529)
.. .-+...|...-.+. .++.|+... -.....++.+.|+..++-.+++.+-+. .|.+..+... .+.+
T Consensus 237 A~s~ldadp~~Ar~~A~~a-----~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar 306 (531)
T COG3898 237 AMSLLDADPASARDDALEA-----NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRAR 306 (531)
T ss_pred HHHHhcCChHHHHHHHHHH-----hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhc
Confidence 22 23445555555544 778887654 334557788999999999999999854 6777655333 3345
Q ss_pred cCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh-cCCHHHHH
Q 009663 403 AGRFEEALEVVKGM----KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE-LGKWDEVR 476 (529)
Q Consensus 403 ~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~a~ 476 (529)
.|+. ++.-+++. ..+| +..+...+..+-...|++..|..--+.+.+..| ..++|..|+++-.. .|+-.++.
T Consensus 307 ~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 307 SGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred CCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHH
Confidence 5553 33333322 3445 567777888888899999999999999999999 77888888887654 49999999
Q ss_pred HHHHHHhhC
Q 009663 477 KVRKMLKDR 485 (529)
Q Consensus 477 ~~~~~~~~~ 485 (529)
..+-+..+.
T Consensus 384 ~wlAqav~A 392 (531)
T COG3898 384 QWLAQAVKA 392 (531)
T ss_pred HHHHHHhcC
Confidence 998777654
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.57 E-value=0.00099 Score=53.16 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNG 431 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 431 (529)
.....+...+...|++++|.++|+.+. -+.| +...|..|.-++-..|++++|+..|... .+.| |+..+-.+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 334455556677899999999999987 3466 5777888999999999999999999987 4455 67888888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 009663 432 CKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~ 452 (529)
+...|+.+.|.+.|+.++..-
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999988854
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.57 E-value=0.017 Score=51.18 Aligned_cols=178 Identities=10% Similarity=0.043 Sum_probs=95.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchH---HHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 009663 84 ITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIY---PHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYS 160 (529)
Q Consensus 84 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (529)
...+... |++++|++.|+.+.... +-+.... ..+..++.+.++++.|...+++.++..+.....-+...+.+.+
T Consensus 39 A~~~~~~-g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 39 AQQKLQD-GNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3334456 88888888888888764 2222222 3455667788888888888888888754333333333333332
Q ss_pred h--cC--------------CCHH---HHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHH
Q 009663 161 R--SG--------------NDIG---IARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAG 221 (529)
Q Consensus 161 ~--~g--------------~~~~---~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 221 (529)
. .+ +|.. .|.+.|+.+ +.-|=...-..+|...+..+...=...--.+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l-----------i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL-----------VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH-----------HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 0122 222333332 2222222333344333333322111112245566
Q ss_pred HHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHH
Q 009663 222 CTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYV 276 (529)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 276 (529)
|.+.|.+..|+.-++.+... -++.+........+..++...|..++|......+
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 88888888888888887753 1233334445556666777777777666655443
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.57 E-value=0.0031 Score=62.39 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=100.9
Q ss_pred CCCCCCHHHHHHHHHHHhC-----CCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHH
Q 009663 348 HNIRPDGVTFISLLNACTH-----GGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRA--------GRFEEALEVV 413 (529)
Q Consensus 348 ~~~~p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~ 413 (529)
.+.+.+...|...+++... .++.+.|..+|+++.+ ..|+ ...|..+..+|... +++..+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3455677888888877433 2347799999999984 4786 45555554444332 1234445555
Q ss_pred HhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 414 KGM----KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 414 ~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
++. ....++..+..+.......|++++|...++++.+++| +...|..++.++...|+.++|.+.+++....+..
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 443 1334567788777777778999999999999999999 6789999999999999999999999998777654
No 185
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.012 Score=54.01 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=60.0
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGR 402 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 402 (529)
+-..+.|++..|.+.|.+.+.+-+....|+...|.....+..+.|+..+|+.-.+... .+.|. ...|..-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3455677888888888877654445555666667766777777788888877777766 34443 3444444556666
Q ss_pred cCChHHHHHHHHhC
Q 009663 403 AGRFEEALEVVKGM 416 (529)
Q Consensus 403 ~g~~~~A~~~~~~~ 416 (529)
.++|++|.+-++..
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 77778877777765
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.0019 Score=49.71 Aligned_cols=54 Identities=24% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPN---NGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
.+...+...|++++|..++++.....|+ +......++.++...|+.++|++.+-
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444445555555555555555544444 33344444444455555555554443
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.54 E-value=0.00016 Score=49.84 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.|++++|..+|+.+... .| +...+..+..+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555433 23 3444444555555555555555555554
No 188
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00012 Score=41.07 Aligned_cols=29 Identities=24% Similarity=0.598 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHCC
Q 009663 79 LYTAMITAYASQPAHASSAFSLYRDMVRRG 108 (529)
Q Consensus 79 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~ 108 (529)
+||.++++|++. |++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~-~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKM-GQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHcc-chHHHHHHHHHHHhHCc
Confidence 677777777777 77777777777777665
No 189
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0012 Score=60.01 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR-AGRFEEALEVVKGM--KIEPDEVVWGSLLNG 431 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 431 (529)
.+|..+++...+.+..+.|..+|.++.+.. ..+..+|-.....-.. .++.+.|..+|+.. .+..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 468888999989999999999999998432 2345666666555334 56677799999998 455678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNG---GYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+...++.+.|..+|++++..-|.+. .+|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998665443 58888888888999999999999888654
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.001 Score=59.36 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN---GGYGIMLAN 464 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 464 (529)
|..-+..+.+.|++++|...|+.+ ...|+ ...+.-+..+|...|++++|...|+++.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334455666666666555 22332 2344455666666667777777777666655553 344444566
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 009663 465 IYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 465 ~~~~~g~~~~a~~~~~~~~~~ 485 (529)
++...|++++|..+++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666777777776666554
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.49 E-value=0.00025 Score=49.01 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=50.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYG-RTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 453 (529)
++..|..+...+...|++++|+..|++. .+.| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777777888888888888888776 4455 4667778888888888 68889999988888877
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.46 E-value=0.00097 Score=49.24 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCC--------CchHHHHHHHHHHHhCCCCchhH
Q 009663 80 YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVL--------ESRGTKMVHTQIVKSGFEQYPVV 151 (529)
Q Consensus 80 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 151 (529)
-...|..+... +++.....+|+.+++.|+.-|+..+|+.++.+.++.. ..-..+.++++|+..+++|+..+
T Consensus 28 ~i~~I~~~~~~-~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFEN-EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhh-cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 34567777778 9999999999999999976899999999999865442 23346789999999999999999
Q ss_pred HHHHHHHHHhc
Q 009663 152 ETALVNSYSRS 162 (529)
Q Consensus 152 ~~~l~~~~~~~ 162 (529)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.40 E-value=0.0021 Score=60.94 Aligned_cols=106 Identities=10% Similarity=0.110 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSKK------RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFI 358 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~ 358 (529)
......+++.+....+.+.+..++.+.... ...|..++++.|...|..+.++.++..=.. .|+-||..+++
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~---yGiF~D~~s~n 142 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ---YGIFPDNFSFN 142 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh---cccCCChhhHH
Confidence 333444444444444555555555443321 112445666666666666666666665554 66667777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG 394 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 394 (529)
.||..+.+.|++..|.++...|..+ +...+..++.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~ 177 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQA 177 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHH
Confidence 7777777777776666666666544 3333444443
No 194
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.40 E-value=0.1 Score=47.81 Aligned_cols=275 Identities=15% Similarity=0.120 Sum_probs=178.0
Q ss_pred hcCCCHHHHHHHHhhCCC---CChhhHHHHHHH--HHhcCCHHHHHHHHhhCCCC-Chh--hHHHHHHHHHhCCChhHHH
Q 009663 161 RSGNDIGIARKLFDEMSD---RNVVSWTAMISG--YTRVGDIKNAASLFDSMPDR-DVP--AWNSVIAGCTQNGLFSDAI 232 (529)
Q Consensus 161 ~~g~~~~~A~~~~~~~~~---~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~-~~~--~~~~li~~~~~~g~~~~A~ 232 (529)
-.| |-..|.+.-.+..+ .|......++.+ -.-.|+.+.|.+-|+.|... ... -...|.-.-.+.|..+.|.
T Consensus 96 gAG-da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAG-DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccC-chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 346 77777777665542 566666566544 34579999999999999752 221 2344445556789999998
Q ss_pred HHHHHhhhcccCCCCCC-HHHHHHHHHHhhccCCchHHHHHHHHHHHhCC-CCCcc--HHHHHHHHHH---hCCCHHHHH
Q 009663 233 SFFRRMGMEVSDNIRPN-QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL-DLDSF--ISNALIDMYG---KCGSLKEAR 305 (529)
Q Consensus 233 ~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~l~~~~~---~~g~~~~A~ 305 (529)
.+-+..- +.-|. .......+...+..|+++.|+++++.-....+ .++.. .-..|+.+-. -..+...|.
T Consensus 175 ~yAe~Aa-----~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 175 HYAERAA-----EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHH-----hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 8888775 33443 45677888999999999999999987765433 22221 1111222111 122344455
Q ss_pred HHHhhcC--CCChh-HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 306 RAFDRNS--KKRLT-SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 306 ~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
..-.+.. ++|.+ .-..-..++.+.|+..++-.+++.+=+ ....|+ .... ....+.|+. +..-+++..+
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~--ia~l--Y~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPD--IALL--YVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChH--HHHH--HHHhcCCCc--HHHHHHHHHH
Confidence 4443333 34544 444456789999999999999999855 444444 3322 234455543 3444444433
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 009663 383 TYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGC-KIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 383 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 450 (529)
--.++| +......+..+-...|++..|..--+.. ...|....|..|.+.- ...|+-.++...+.+.++
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 335566 4677777888888999998887777666 5678888888887764 455999999999998887
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.37 E-value=0.001 Score=62.39 Aligned_cols=65 Identities=12% Similarity=-0.104 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG---YGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+...++.+..+|...|++++|+..|+++++++|++.. +|+.++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4666777777777777777777777777777776663 3777777777777777777777777664
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0036 Score=46.34 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-CCCHHHHHHHHHHHhCCC--------cHHHHHHHHHHhHHhcCCCC
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNI-RPDGVTFISLLNACTHGG--------LVEQGRAYFKLMTKTYRIEP 388 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~p 388 (529)
+-...|..+...+++...-.+|+.+++ .|+ .|+..+|+.++.+.++.. +......+|+.+... +++|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR---N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP 102 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR---NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKP 102 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh---cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCC
Confidence 344456666677999999999999988 898 899999999998876532 345677788888866 8889
Q ss_pred ChhHHHHHHHHHHh
Q 009663 389 QIEHYGCLVDLLGR 402 (529)
Q Consensus 389 ~~~~~~~l~~~~~~ 402 (529)
+..+|+.++..+.+
T Consensus 103 ~~etYnivl~~Llk 116 (120)
T PF08579_consen 103 NDETYNIVLGSLLK 116 (120)
T ss_pred cHHHHHHHHHHHHH
Confidence 88899888877654
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.0011 Score=60.37 Aligned_cols=129 Identities=17% Similarity=0.060 Sum_probs=90.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHh---HHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLM---TKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-------K-IEPDEV 423 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 423 (529)
.|..|...|.-.|+++.|+...+.- .+.+|-.. ....+..|..++.-.|+++.|.+.|+.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566678888888776542 23334333 3557788888899999999998888754 2 122455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEID------PNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+...|...|.-..+++.|+.++.+-+.+. ......++.|+.+|...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 67778888888888999998887765522 23566788889999999999999887766543
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.35 E-value=0.0009 Score=46.74 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=53.0
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
-..|.+.+++++|.++++.+ ...| +...|.....++...|++++|.+.++++.+..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35678889999999999888 5555 566777788889999999999999999999999776655443
No 199
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.34 E-value=0.00026 Score=39.64 Aligned_cols=27 Identities=37% Similarity=0.661 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhh
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMR 344 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 344 (529)
+|+.++++|++.|++++|.++|++|.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 455555555555555555555555544
No 200
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.31 E-value=0.00021 Score=40.83 Aligned_cols=33 Identities=39% Similarity=0.524 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 009663 444 AVKKLIEIDPNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 444 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
+|+++++++|+++.+|..++.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999986
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.30 E-value=0.00057 Score=42.00 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
.++..+..+|.+.|++++|+++|+++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999999888764
No 202
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0069 Score=50.56 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC--CHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP--DGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
.|..+...+...|++++|+..|++... ....| ...++..+...+...|++++|...++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~---l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMR---LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555556666666666666543 21111 12345555555555666666666665555
No 203
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.27 E-value=0.0025 Score=60.42 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHCCCC-CCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009663 80 YTAMITAYASQPAHASSAFSLYRDMVRRGQP-QPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNS 158 (529)
Q Consensus 80 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (529)
...++..+... .+.+.+..++-+....... ..-..|..++++.|...|..+.+..++..=...|+-||..++|.||+.
T Consensus 69 ld~fvn~~~~~-~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 69 LDIFVNNVESK-DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHhhcCCH-hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 33344444333 4444444444444433100 122333445555555555555555555555555555555555555555
Q ss_pred HHhcCCCHHHHHHHHhhCC
Q 009663 159 YSRSGNDIGIARKLFDEMS 177 (529)
Q Consensus 159 ~~~~g~~~~~A~~~~~~~~ 177 (529)
+.+.| ++..|.++...|.
T Consensus 148 fl~~~-~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 148 FLKKG-NYKSAAKVATEMM 165 (429)
T ss_pred Hhhcc-cHHHHHHHHHHHH
Confidence 55555 5555555544443
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.14 Score=50.65 Aligned_cols=193 Identities=10% Similarity=0.065 Sum_probs=123.2
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHHcCChhHHH
Q 009663 262 HTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKR-----LTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~ 336 (529)
--|.+++|+++|-.+-..+. .+..+.+.|+|-...++++.-...+ ...|+.+...++....|++|.
T Consensus 746 ~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888876655433 5677888899988888887644321 237888888888888899998
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 337 CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 337 ~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
++|..-.. -...+.++.+...+++-+.+-..+ +.+....-.+.+++.+.|.-++|.+.+-+.
T Consensus 817 ~yY~~~~~------------~e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 817 KYYSYCGD------------TENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHhccc------------hHhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 88877532 123455565555555554444333 335666777888889999999998888777
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------------CCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP------------NNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+ .|. +-+..|...+++.+|.++.++..-.+. .+..... -+..+.++|+.-+|.+++.+|-+
T Consensus 879 s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~e-aIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 879 S-LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHME-AIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred c-CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHH-HHHHhhhcccchhHHHHHHHHhH
Confidence 5 222 234566677777777766554321000 0111111 22446677887777788777765
Q ss_pred CCCc
Q 009663 485 RNAY 488 (529)
Q Consensus 485 ~~~~ 488 (529)
+.-+
T Consensus 952 ~e~~ 955 (1189)
T KOG2041|consen 952 REQE 955 (1189)
T ss_pred HHhh
Confidence 5433
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.23 E-value=0.077 Score=45.76 Aligned_cols=182 Identities=11% Similarity=0.034 Sum_probs=90.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDM 294 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (529)
+-.....+...|++++|.+.|+.+.... ++-+--......++.++.+.|+++.|...++..++.-+.....-+...+.+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3344556677788888888888876431 111112234455666777778888888888777766443222222222222
Q ss_pred HHhCCCHHHHHHHHhhcCCCCh-------hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCC
Q 009663 295 YGKCGSLKEARRAFDRNSKKRL-------TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG 367 (529)
Q Consensus 295 ~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~ 367 (529)
.+.-....... ....|. ..+..++.-|=...-..+|...+..+.. . -...-..+..-|.+.
T Consensus 87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~---~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN---R----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH---H----HHHHHHHHHHHHHCT
T ss_pred HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHc
Confidence 22111111110 111111 1344455555555555555554444432 0 011112345667788
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 009663 368 GLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEA 409 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 409 (529)
|.+..|..-++.+.+.+.-.+ .......++.+|.+.|..+.+
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 888888888888887642222 134556677777777776644
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.22 E-value=0.006 Score=54.54 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVW 425 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~ 425 (529)
..|...+....+.|++++|...|+.+.+.+ |+ +..+.-+..+|...|++++|...|+.+ ...|+ ...+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345555555566789999999999998763 43 356777888999999999999999888 32332 5556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 457 (529)
..++..+...|+.++|...|+++++..|++..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 66677788999999999999999999997654
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.025 Score=48.72 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC----CCCChhHHH
Q 009663 319 WNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYR----IEPQIEHYG 394 (529)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~ 394 (529)
.++++..+.-.+.+.-....+.+.++ ...+.+......|.+.-.+.|+.+.|..+|++..+..+ +.-+..+..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~---~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK---YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH---hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34455555556666666666666654 33334455556666666666777777777765544311 111222222
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 395 CLVDLLGRAGRFEEALEVVKGMK--IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.....|.-++++.+|...+.++. .+.++...|.-.-+..-.|+...|++..+.++...|.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33334445556666666666551 1223444444444444456666666666666666664
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.18 E-value=0.0039 Score=52.31 Aligned_cols=97 Identities=13% Similarity=0.238 Sum_probs=74.2
Q ss_pred HHHhhcC--CCCChhHHHHHHHHHhcC----CCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCC-----------
Q 009663 66 RFIFDHL--TTPNTYLYTAMITAYASQ----PAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVL----------- 128 (529)
Q Consensus 66 ~~~~~~~--~~~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~----------- 128 (529)
...|+.. ...+-.+|..++..+.+. +|..+-....+..|.+.|+ ..|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv-~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGV-EKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCC-cccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 3455554 356777777777777643 2677777778888888888 888999999988765422
Q ss_pred -----CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 129 -----ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 129 -----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
+.+-|.+++++|...|+-||..++..|++.+.+.+
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 34457899999999999999999999999998776
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.15 E-value=0.11 Score=48.53 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=98.4
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCC---C----hhHHHHHHHHHHH---cCChhHHHHHHHHHhhcccCCCCCCHHHHHH
Q 009663 290 ALIDMYGKCGSLKEARRAFDRNSKK---R----LTSWNSMINSFAL---HGQSENSICVFEEMMRCQDHNIRPDGVTFIS 359 (529)
Q Consensus 290 ~l~~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ 359 (529)
.++-+|....+++...++.+.+... + ...-....-++.+ .|+.++|++++..+.. ....++..+|..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~---~~~~~~~d~~gL 222 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE---SDENPDPDTLGL 222 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh---ccCCCChHHHHH
Confidence 3444677777777777777776643 1 1122233445555 7888888888888655 556677778777
Q ss_pred HHHHHhC---------CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-h---HHHHHHH---Hh-C------
Q 009663 360 LLNACTH---------GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGR-F---EEALEVV---KG-M------ 416 (529)
Q Consensus 360 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~---~~A~~~~---~~-~------ 416 (529)
+.+.|-. ....++|+..|.+.- .+.|+...--.++..+...|. . .+..++- .. .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7666532 234677888887655 445553322222222333332 1 1222222 11 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.-..+-..+.+++.++.-.|+++.|.+.++++.+..|..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 123466777889999999999999999999999987743
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.09 E-value=0.0013 Score=46.62 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEI----DPN---NGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
.+++.+...|...|++++|+..|++++++ +++ ...++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777788888888888888877763 222 245667778888888888888888877643
No 211
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.07 E-value=0.02 Score=44.08 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=50.3
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhcccCCCCCC--HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC--CccHHHHHHH
Q 009663 218 VIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN--QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL--DSFISNALID 293 (529)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 293 (529)
+..++-..|+.++|+.+|++.... |.... ...+..+.+++...|++++|..+++......+.. +......+.-
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA---GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 345566677777777777777654 54443 2234445556667777777777777666543221 1122222334
Q ss_pred HHHhCCCHHHHHHHHhh
Q 009663 294 MYGKCGSLKEARRAFDR 310 (529)
Q Consensus 294 ~~~~~g~~~~A~~~~~~ 310 (529)
++...|+.++|.+.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 55566666666666544
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.02 E-value=0.17 Score=49.55 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=55.2
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 302 KEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 302 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
+.+.++-.++...+..+...+...+.+...+.-|-++|..|-. ...++......++|++|..+-+...
T Consensus 733 d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 733 DMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------------HHHHhhheeecccchHhHhhhhhCc
Confidence 3333333444444444555555555555666666667666632 2345555666677777766666554
Q ss_pred HhcCCCCChh-----------HHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 382 KTYRIEPQIE-----------HYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 382 ~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.+.|+.. -|.---++|.++|+-.+|.++++++
T Consensus 801 ---e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 801 ---EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ---cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 2233321 1222334677777778888887776
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.013 Score=49.35 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=61.3
Q ss_pred CCCChhHHHHHHHHHHHc-----CChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC----------------cH
Q 009663 312 SKKRLTSWNSMINSFALH-----GQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG----------------LV 370 (529)
Q Consensus 312 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~----------------~~ 370 (529)
...+..+|..++..|.+. |..+=....+..|.+ .|+.-|..+|+.|+..+=+.. +.
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e---fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq 119 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE---FGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQ 119 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH---cCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHH
Confidence 345566677777666643 566666677777877 999999999999998876521 34
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 009663 371 EQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGR 405 (529)
Q Consensus 371 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (529)
+-|++++++|.. +|+.||..++..|++.+++.+.
T Consensus 120 ~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 120 ECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 556667777753 3777777777777666655553
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.93 E-value=0.032 Score=48.11 Aligned_cols=165 Identities=15% Similarity=0.098 Sum_probs=83.4
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC--C----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHh
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKK--R----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACT 365 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~ 365 (529)
...+...|++.+|...|+.+... + ....-.++.++.+.|+++.|...+++..+. ..-.|. ..+...+.+.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~-~~~A~Y~~g~~ 88 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPK-ADYALYMLGLS 88 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc-hhhHHHHHHHH
Confidence 33445556666666666555421 1 114445566666677777777777766541 111121 11222222211
Q ss_pred -------------CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009663 366 -------------HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGC 432 (529)
Q Consensus 366 -------------~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 432 (529)
..+...+|...|+.+.+ -|=......+|...+..+.... ...-..+...|
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y 151 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARFY 151 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 11222334444444443 3333334444444443331000 01112245668
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHH
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGG---YGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 476 (529)
.+.|.+..|..-++.+++.-|+.+. ....++.+|.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8999999999999999999887544 5566788889999888554
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.022 Score=52.54 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
.++..|.-+|.+.+++.+|++..+.. .. ++|......-..+|...|+++.|+..|+++++++|+|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46778889999999999999999887 43 45788888889999999999999999999999999999999999887777
Q ss_pred cCCHHHH-HHHHHHHhhC
Q 009663 469 LGKWDEV-RKVRKMLKDR 485 (529)
Q Consensus 469 ~g~~~~a-~~~~~~~~~~ 485 (529)
...+.+. .++|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6665544 7788888644
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.16 Score=44.08 Aligned_cols=149 Identities=14% Similarity=0.038 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 009663 333 ENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEV 412 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 412 (529)
+.-++.|++=. ....+.++.++.-.|.+.-....+.++++. .-+.++...+.|.+.-.+.|+.+.|...
T Consensus 166 ESsv~lW~KRl----------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~y 234 (366)
T KOG2796|consen 166 ESSIRLWRKRL----------GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKY 234 (366)
T ss_pred hhHHHHHHHHH----------HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHH
Confidence 55556665532 234556666777777888888888888764 3233677778888888888888888888
Q ss_pred HHhC----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 413 VKGM----K----IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 413 ~~~~----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
|++. + +.-...+.......+.-++++..|...+.+....+|.++.+.+.-+-++.-.|+..+|++.++.|.+
T Consensus 235 f~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 235 FQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8854 1 2222233333333455677888888888888888888888888777777778888888888888887
Q ss_pred CCCccCCc
Q 009663 485 RNAYKTPG 492 (529)
Q Consensus 485 ~~~~~~~~ 492 (529)
.-..+...
T Consensus 315 ~~P~~~l~ 322 (366)
T KOG2796|consen 315 QDPRHYLH 322 (366)
T ss_pred cCCccchh
Confidence 76555443
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.013 Score=51.24 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=33.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPN---NGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
|..++...|++++|...|..+.+-.|+ -|..+.-|+.+..+.|+.++|..+|+++.++-
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 555566666666666666666554433 33445555555666666666666666665543
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.0097 Score=48.30 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCccCC
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK-----DRNAYKTP 491 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~ 491 (529)
....++..+...|++++|...++++...+|.+...+..++.+|...|+..+|.++|+++. +.|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 455667778889999999999999999999999999999999999999999999998884 34665544
No 219
>PRK11906 transcriptional regulator; Provisional
Probab=96.74 E-value=0.041 Score=52.10 Aligned_cols=119 Identities=8% Similarity=0.094 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhC---------CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTH---------GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLL 400 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 400 (529)
.+.|+.+|.+... .....|+. ..|..+..++.. ..+..+|.++-++.. .+.| |+.....+..+.
T Consensus 274 ~~~Al~lf~ra~~--~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~ 348 (458)
T PRK11906 274 IYRAMTIFDRLQN--KSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHHhh--cccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHH
Confidence 3456666666642 13445543 334444333321 112334444444444 2333 455555555555
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 401 GRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.-.|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.++++.+++|..
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 5666666666666666 44554 3444444555555666666666666666666643
No 220
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.8 Score=45.98 Aligned_cols=327 Identities=11% Similarity=0.022 Sum_probs=163.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCc--hHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009663 82 AMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLES--RGTKMVHTQIVKSGFEQYPVVETALVNSY 159 (529)
Q Consensus 82 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (529)
.+|.-+... +.+..|+++-+.+...-. +- ...|......+.+..+. +++.+..++=++... -....|..+.+..
T Consensus 442 ~vi~Rl~~r-~~Y~vaIQva~~l~~p~~-~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 442 VVIDRLVDR-HLYSVAIQVAKLLNLPES-QG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhHHHHhc-chhHHHHHHHHHhCCccc-cc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHH
Confidence 356666666 888888888877743321 22 45566655555544222 222322222222212 2334566677777
Q ss_pred HhcCCCHHHHHHHHhhCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChhH
Q 009663 160 SRSGNDIGIARKLFDEMSDR--------NVVSWTAMISGYTRVGDIKNAASLFDSMPDR-DVPAWNSVIAGCTQNGLFSD 230 (529)
Q Consensus 160 ~~~g~~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 230 (529)
...| +.+.|..+++.=... +..-+..-+.-+.+.||.+-...++-.+... +...+ +....+.-.
T Consensus 518 y~~G-R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l------~~~l~~~p~ 590 (829)
T KOG2280|consen 518 YQEG-RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL------FMTLRNQPL 590 (829)
T ss_pred HhcC-cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH------HHHHHhchh
Confidence 7788 888888887654331 2223334444455555555555554444321 11111 111122333
Q ss_pred HHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHH-HHHHHHh-CCCCCccHHHHHHHHHHhCCCHHHH----
Q 009663 231 AISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVI-HGYVYRN-GLDLDSFISNALIDMYGKCGSLKEA---- 304 (529)
Q Consensus 231 A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A---- 304 (529)
|..+|.+..+. .-. . .+-..+....+....-.+ ++...+. -+.+-..........+.+.....-.
T Consensus 591 a~~lY~~~~r~---~~~---~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 591 ALSLYRQFMRH---QDR---A---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhHHHHHHHHh---hch---h---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 44444443221 000 0 011111111111111111 1110000 0111122222333444443331111
Q ss_pred ------HHHHhhcCCC-C----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 305 ------RRAFDRNSKK-R----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 305 ------~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
+.+.+.+... + ..+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..+++++-
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-------ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-------IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-------CcchhhHHHHHHHHHhhhhHHHH
Confidence 1112222111 1 1144445566677788888888877664 37777787788888888888776
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 374 RAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
+++-+... .+..|.-.+.+|.+.|+.++|.+++.+.+-.+ -...+|.+.|++.+|.++.-+-
T Consensus 735 ekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 735 EKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHHh
Confidence 65544332 25567778888899999999999988884222 4566777888888887765433
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.69 E-value=0.015 Score=47.11 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
..++..+...|++++|.++++.+ ...| +...|..++.++...|+..+|.+.|+++.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455555555666665555555 2233 455555556666666666666655555543
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.69 E-value=0.032 Score=43.42 Aligned_cols=53 Identities=13% Similarity=0.252 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 009663 348 HNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLL 400 (529)
Q Consensus 348 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 400 (529)
....|+..+..+++.+|+..|++..|.++.+.+.+.++++-+..+|..|++-.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777666677777666543
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.67 E-value=0.12 Score=39.61 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=81.3
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRF 406 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 406 (529)
.-.|..++..++..+... . .+..-++-+|--....-+-+-..++++.+-+-+.+. .+|++
T Consensus 13 ildG~V~qGveii~k~v~---S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~Nl 72 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN---S---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNL 72 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH---H---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-T
T ss_pred HHhchHHHHHHHHHHHcC---c---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcch
Confidence 345777777777766654 1 233334444433333344445555555554332222 23344
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 407 EEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 407 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
......+-.++ .+...+..-+..+...|+-+.-.+++..+.+.+..+|.+...++.+|.+.|+..++-+++++..++|
T Consensus 73 KrVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 73 KRVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44444333332 3455667778888999999999999999886554489999999999999999999999999999999
Q ss_pred Cc
Q 009663 487 AY 488 (529)
Q Consensus 487 ~~ 488 (529)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 74
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.67 E-value=0.59 Score=43.99 Aligned_cols=413 Identities=11% Similarity=0.038 Sum_probs=226.3
Q ss_pred HHhhcCC--CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhC
Q 009663 67 FIFDHLT--TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSG 144 (529)
Q Consensus 67 ~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (529)
++-++++ +.|+.+|-.||.-+..+ +..++..+++++|..-- +--...|..-+++-....++.....+|.+.+...
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq-~s~~~~re~yeq~~~pf--p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQ-ESMDAEREMYEQLSSPF--PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhh-hhHHHHHHHHHHhcCCC--ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 5556665 45778999999999999 99999999999997542 4455677777887677789999999999998875
Q ss_pred CCCchhHHHHHHHHHHhcCC--------CHHHHHHHHhhCC--CC-ChhhHHHHHHHH---H------hcCCHHHHHHHH
Q 009663 145 FEQYPVVETALVNSYSRSGN--------DIGIARKLFDEMS--DR-NVVSWTAMISGY---T------RVGDIKNAASLF 204 (529)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~--------~~~~A~~~~~~~~--~~-~~~~~~~ll~~~---~------~~g~~~~A~~~~ 204 (529)
.. ...|...+.--.+.++ .+-+|.++.-... +| ....|+..+..+ - .+.+++.....+
T Consensus 107 l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 LN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred cc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 54 5555555443333221 1222333222211 12 333454444322 1 233445555556
Q ss_pred hhCCC-C---------ChhhHHHHHHHHHh-------CCChhHHHHHHHHhhhcccCCCCC----CHHHHHH--------
Q 009663 205 DSMPD-R---------DVPAWNSVIAGCTQ-------NGLFSDAISFFRRMGMEVSDNIRP----NQVTLVC-------- 255 (529)
Q Consensus 205 ~~~~~-~---------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~~~~~~~~p----~~~~~~~-------- 255 (529)
.++.. | |-..|..=+..... .--+-.|.+.+++...- -.|+.. +..+++-
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nl-t~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNL-TRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-hccccccCchhhhhhccccccccch
Confidence 55543 1 11112111111110 11234455555554321 112221 1222222
Q ss_pred ---HHHHhhc-----cCC--chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHH
Q 009663 256 ---ALSAIGH-----TGM--LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINS 325 (529)
Q Consensus 256 ---ll~~~~~-----~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 325 (529)
.|.--.. .|+ .....-++++....- .....+|---...+...++-++|+.......+-.+..-..+...
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~-~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ 342 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYF-YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEY 342 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHH
Confidence 1111000 000 011112222222221 11222333333344556777888877765432211111111112
Q ss_pred HHHcCChhHHHHHHHHHhh-------cc----cCCC---------------CCCHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 326 FALHGQSENSICVFEEMMR-------CQ----DHNI---------------RPDGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~-------~~----~~~~---------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
|.-.++.+.....|+.... +. ..+. ..-...|...+....+...++.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2222222222222211110 00 0000 11234567777777788889999999999
Q ss_pred hHHhcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 009663 380 MTKTYR-IEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE-VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN-- 454 (529)
Q Consensus 380 ~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-- 454 (529)
+.+. + +.+++..+++++..++ .|+..-|..+|+-- ..-||. ...+..+..+...++-+.|..+|+..++.-.+
T Consensus 423 ~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 423 LRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred Hhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 9876 5 5678888999988765 67788899999764 334554 44466777788899999999999977763222
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 455 NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
-..+|..++..-..-|+...|..+=++|.+.-..
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 3568888888778889999999998888776544
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.66 E-value=0.0047 Score=56.51 Aligned_cols=256 Identities=14% Similarity=0.094 Sum_probs=149.9
Q ss_pred HHHhcCCCChHHHHHHHHHHHHCCCCCCCcc----hHHHHHHhCccCCCchHHHHHHHHHH--H--hCCC-CchhHHHHH
Q 009663 85 TAYASQPAHASSAFSLYRDMVRRGQPQPNQF----IYPHVLKSCPDVLESRGTKMVHTQIV--K--SGFE-QYPVVETAL 155 (529)
Q Consensus 85 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~l 155 (529)
.-+|+. |+....+.+|+..++-| ..|.. +|..+.++|.-.+++++|.++...=+ . .|-+ -.......|
T Consensus 25 ERLck~-gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 25 ERLCKM-GDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHhc-cchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 456788 99999999999999988 44543 46677778888889999988754211 1 1111 012223334
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHhcCC--------------------HHHHHHHHhh
Q 009663 156 VNSYSRSGNDIGIARKLFDEMSD---------RNVVSWTAMISGYTRVGD--------------------IKNAASLFDS 206 (529)
Q Consensus 156 ~~~~~~~g~~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~ 206 (529)
.+.+--.| .+++|.....+-.. .....+..+...|...|+ ++.|.++|..
T Consensus 102 GNtlKv~G-~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 102 GNTLKVKG-AFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred cchhhhhc-ccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 44455556 66666554333221 122344455555654443 3334444432
Q ss_pred CC-------CC--ChhhHHHHHHHHHhCCChhHHHHHHHHhhhc-ccCCC-CCCHHHHHHHHHHhhccCCchHHHHHHHH
Q 009663 207 MP-------DR--DVPAWNSVIAGCTQNGLFSDAISFFRRMGME-VSDNI-RPNQVTLVCALSAIGHTGMLQLGKVIHGY 275 (529)
Q Consensus 207 ~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 275 (529)
=. +. -...|..|...|.-.|+++.|+..-+.-..- ...|- ......+..+..++.-.|+++.|.+.|+.
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 11 11 1234666666677778888888765432210 00011 12344677777888888888888888876
Q ss_pred HHHhCC-----CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChhHHHHHHHH
Q 009663 276 VYRNGL-----DLDSFISNALIDMYGKCGSLKEARRAFDRNSK-------K--RLTSWNSMINSFALHGQSENSICVFEE 341 (529)
Q Consensus 276 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (529)
.....+ ........+|...|.-..++++|+.++.+-.. . ...++-+|..+|...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 543322 12233455677777777788888888764221 1 223667778888888888888877666
Q ss_pred Hhh
Q 009663 342 MMR 344 (529)
Q Consensus 342 m~~ 344 (529)
-.+
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 544
No 226
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.65 E-value=0.55 Score=43.45 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=53.2
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
+.-+...|+...|.++-.+..-++-..|-..+.+++..++|++-..+.. .+-.| .-|..++.+|.+.|+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~-------skKsP--IGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK-------SKKSP--IGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh-------CCCCC--CChHHHHHHHHHCCCHH
Confidence 4444555556666666555555555556666666666666655544321 11112 34555555555556555
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 372 QGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
+|..+..++. +..-+..|.++|++.+|.+.--+
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555554421 12234555555555555554433
No 227
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.64 E-value=0.77 Score=44.96 Aligned_cols=385 Identities=11% Similarity=0.070 Sum_probs=218.8
Q ss_pred CChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcc-hHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHH
Q 009663 75 PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQF-IYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVET 153 (529)
Q Consensus 75 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 153 (529)
-+...|..+|..--.. .+.+.+..++..++.. -|... -|......=.+.|..+.+..+|++.+.. ++.+...|.
T Consensus 43 ~~f~~wt~li~~~~~~-~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~ 117 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSI-EDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWL 117 (577)
T ss_pred hcccchHHHHhccCch-hHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHH
Confidence 3445566666655555 5556667777777654 34433 3344444445677778888888877653 556677777
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh---
Q 009663 154 ALVNSYSRSGNDIGIARKLFDEMSD------RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQ--- 224 (529)
Q Consensus 154 ~l~~~~~~~g~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--- 224 (529)
.....+.....+.+.....|+.... .....|...|.--..++++.....+++++.+-....|+..-..|.+
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHh
Confidence 6665554443277777777777654 3455677777777777888888888887765433333322222211
Q ss_pred C------CChhHHHHHHHHhhhc----------------ccCCCCCC-HH--HHHHHHH-------HhhccCCchHHHHH
Q 009663 225 N------GLFSDAISFFRRMGME----------------VSDNIRPN-QV--TLVCALS-------AIGHTGMLQLGKVI 272 (529)
Q Consensus 225 ~------g~~~~A~~~~~~m~~~----------------~~~~~~p~-~~--~~~~ll~-------~~~~~~~~~~a~~~ 272 (529)
. ...+++.++-...... ...-..|. .. ..+.+-. ++............
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 1122222222111100 00000110 00 0111111 11111122222222
Q ss_pred HHHHHHhC---CC----CCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHH
Q 009663 273 HGYVYRNG---LD----LDSFISNALIDMYGKCGSLKEARRAFDRNSKKR---LTSWNSMINSFALHGQSENSICVFEEM 342 (529)
Q Consensus 273 ~~~~~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m 342 (529)
++.-++.. +. ++..+|..-+..-...|+.+.+.-+|++..-+- ...|-..+.-....|+.+-|..++...
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 22222211 11 234467777777788999999999998876552 235666666666669999998888776
Q ss_pred hhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH---HHHHhC-C
Q 009663 343 MRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEAL---EVVKGM-K 417 (529)
Q Consensus 343 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~ 417 (529)
.+. ...-.|....+.+.+ +...|++..|..+++.+... . |+ ...-..-+....+.|+.+.+. +++... .
T Consensus 358 ~~i-~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 358 CKI-HVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE 431 (577)
T ss_pred hhh-cCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc
Confidence 540 011233333333333 34568999999999999875 2 65 333344455667888888888 555444 1
Q ss_pred CCCCHHHHH----HHHHH-HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 418 IEPDEVVWG----SLLNG-CKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 418 ~~p~~~~~~----~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
..-+..+.. ..... +.-.++.+.|..++.++.+..|++...+..+.......+
T Consensus 432 ~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 432 GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 122222222 22222 455789999999999999999999999999888777665
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.62 E-value=0.0041 Score=44.07 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-----KIE---PD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEI 451 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 451 (529)
.+|+.+...|...|++++|+..|++. ... |+ ..++..+..++...|++++|++.++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566666667777777666666655 111 22 456677777788888888888888877653
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.62 E-value=0.073 Score=41.91 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=42.1
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 009663 397 VDLLGRAGRFEEALEVVKGM----KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGY 458 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 458 (529)
.....+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.+++.|.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 33445667777777777666 2222 34455567778888888888888888888888876553
No 230
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.13 Score=45.83 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CHHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG---RFEEALEVVKGM-KIEP-DEVVWGS 427 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~~ 427 (529)
|...|..|...|...|+...|...|....+-. .+++..+..+..++.... ...++..+|+++ ...| |+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 56678888888888888888888888776432 224566666665544332 356777888777 4455 4555666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
|...+...|++.+|...|+.|++..|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6667888888888888888888877644
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.032 Score=51.49 Aligned_cols=66 Identities=18% Similarity=0.044 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 422 EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 422 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
..++..+..++.+.+++..|++..+++++++|+|....+.-+.++...|+++.|+..|+++.+...
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 345677788899999999999999999999999999999999999999999999999999987643
No 232
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.59 E-value=1.1 Score=46.09 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQ--IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
+.+.|...+.......++.+. ..+...+.......+..++|..++... ....+.....--+....+.++++.+...+
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 445555555555433233322 112223322222222244555555544 11123333333333333556666555555
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 446 KKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 446 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
..+............-+++++...|+.++|..+|+++
T Consensus 336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5554433334445555556655566666666666555
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.40 E-value=0.14 Score=40.35 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=54.1
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH--HHHHHHHHH--HHHcC-
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE--VVWGSLLNG--CKIYG- 436 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~l~~~--~~~~g- 436 (529)
..+.|++++|.+.|+.+..++...| ....-..|+.+|.+.|++++|...+++. .+.|+. .-|...+.+ .....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 3455777777777777776544433 3445566777777777777777777665 333321 112222222 22221
Q ss_pred --------------CHHHHHHHHHHHHhcCCCCch
Q 009663 437 --------------RTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 437 --------------~~~~A~~~~~~~~~~~p~~~~ 457 (529)
....|...|+++++.-|++.-
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 256777777888877776543
No 234
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=1.3 Score=44.61 Aligned_cols=308 Identities=10% Similarity=0.057 Sum_probs=170.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcC---CHHHHHHHHhhCCC--CChhhHHHHHHHHHhC
Q 009663 154 ALVNSYSRSGNDIGIARKLFDEMSDRN---VVSWTAMISGYTRVG---DIKNAASLFDSMPD--RDVPAWNSVIAGCTQN 225 (529)
Q Consensus 154 ~l~~~~~~~g~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 225 (529)
.+++-+...+ .+..|.++-..+..|. ...|......+.+.. +-+-+..+-+++.. -...+|..+.......
T Consensus 442 ~vi~Rl~~r~-~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRH-LYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcc-hhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 4555666666 7777777777776654 455666666666552 23334444444544 3445677777777777
Q ss_pred CChhHHHHHHHHhhhcccCCCCC---CHHHHHHHHHHhhccCCchHHHHHHHHHHHhC-----------CCCCccHHHHH
Q 009663 226 GLFSDAISFFRRMGMEVSDNIRP---NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNG-----------LDLDSFISNAL 291 (529)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l 291 (529)
|+.+-|..+++.=... ....| +-.-+...+.-+...|+.+....++-.+.+.- .+.....|.-+
T Consensus 521 GR~~LA~kLle~E~~~--~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 521 GRFELARKLLELEPRS--GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred CcHHHHHHHHhcCCCc--cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 7777777776543211 00001 11223344455566666666555554443321 11111122211
Q ss_pred HH--------HHHhCCCHHHHHHHHh--hc-----CCCChhHHHHHHHHHHHcCChh---H-------HHHHHHHHhhcc
Q 009663 292 ID--------MYGKCGSLKEARRAFD--RN-----SKKRLTSWNSMINSFALHGQSE---N-------SICVFEEMMRCQ 346 (529)
Q Consensus 292 ~~--------~~~~~g~~~~A~~~~~--~~-----~~~~~~~~~~li~~~~~~~~~~---~-------a~~~~~~m~~~~ 346 (529)
+. .+.+.++-..+...|. .. ...-..........+.+..... + -+.+.+....
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~-- 676 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLED-- 676 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH--
Confidence 11 0111111111211111 00 0011112223334444433311 1 1122222211
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 009663 347 DHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWG 426 (529)
Q Consensus 347 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 426 (529)
+.|......+.+--+.-+...|+..+|.++-.+.+ -|+...|.--+.+++..++|++-+++-+..+ .+.-|.
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~ 748 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYL 748 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCch
Confidence 13333344455555666677789999988887775 6888899889999999999999998888774 244566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
-+..+|.+.|+.++|.+++-+..... -...+|.+.|++.+|.+.--+-
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHHh
Confidence 78889999999999998877653321 4667888999999998765443
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.22 E-value=0.75 Score=43.11 Aligned_cols=168 Identities=11% Similarity=0.001 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC---CCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH---GGLVEQGRAYFKLMTKTYRIEPQIEHYG 394 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 394 (529)
+-..++-+|....+++..+++++.+.......+.-....--...-++.+ .|+.++|.+++..+... .-.+++.+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 3445666799999999999999999752111111111222233445556 89999999999995544 5567888888
Q ss_pred HHHHHHHh---------cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCH----HHHHHHH---H-HHHhcC----
Q 009663 395 CLVDLLGR---------AGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRT----DFAEFAV---K-KLIEID---- 452 (529)
Q Consensus 395 ~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~---~-~~~~~~---- 452 (529)
.+...|-. ....++|...|.+. .+.|+...=-.++..+...|.. .+..++- . .+.+.+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88777642 22478889998887 6666644322223233333432 1222222 1 111111
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 453 PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 453 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
-.+...+..++.+..-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2255566778888899999999999999998763
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.16 Score=44.98 Aligned_cols=121 Identities=14% Similarity=0.121 Sum_probs=83.0
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCH
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGS---LLNGCKIYGRT 438 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 438 (529)
.....|++.+|..+|+..... .| +...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678888888888888754 33 456677788888999999999999988853333222222 23334444444
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 439 DFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 439 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.+...+ ++-...+|+|...-..++..+...|+.++|.+.+-.+.++..
T Consensus 220 ~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 220 PEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 433333 333346888888888999999999999999988877776654
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.11 E-value=0.18 Score=44.31 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM----KIEP-DEVVWGSL 428 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l 428 (529)
..|+..+..+ +.|++..|...|...++.+.-.+ .+..+--|..++...|++++|..+|..+ +..| -+..+-.+
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3577666655 45779999999999887542111 2334445888899999999999988877 3333 35778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
..+..+.|+.++|...|+++.+..|+.+.+-.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 88889999999999999999999997665543
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.11 E-value=0.056 Score=51.18 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=64.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE----VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
+...+..+..+|.+.|++++|+..|++. .+.|+. ..|..+..+|...|+.++|++.++++++..+. .+..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4667888888888888888888888875 667763 35888888888888888888888888886321 111111
Q ss_pred H--HHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 464 N--IYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 464 ~--~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
. .+....+.++..++++.+.+-|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 0 111223334566666666666653
No 239
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.09 E-value=0.12 Score=40.32 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhH--------------HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMT--------------KTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--- 416 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 416 (529)
..++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555555555555555555554332 11133455555566666666666666666555544
Q ss_pred -CCCCCHHHHHHHHHH
Q 009663 417 -KIEPDEVVWGSLLNG 431 (529)
Q Consensus 417 -~~~p~~~~~~~l~~~ 431 (529)
+++.+..+|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 444445555555554
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.01 E-value=0.29 Score=47.57 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=107.1
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG 299 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 299 (529)
+...-.++++++.+..+.-. .-+.++ ....+.++.-+.+.|.++.|+.+...- ..-.+...+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~--ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN--LLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHH--TGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT
T ss_pred HHHHHcCChhhhhhhhhhhh--hcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcC
Confidence 44566788888777776221 001222 344677777888888888888775432 22456777899
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 300 SLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 300 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
+++.|.++.++.. +...|..|.......|+++-|++.|.+... |..|+-.|...|+.+...++.+.
T Consensus 333 ~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 333 NLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD------------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp -HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------ccccHHHHHHhCCHHHHHHHHHH
Confidence 9999999887665 566999999999999999999999999854 56666677778888887777776
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 009663 380 MTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKI 418 (529)
Q Consensus 380 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 418 (529)
...+ | -++.-..++.-.|+.++..+++.+.+.
T Consensus 399 a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 399 AEER-G------DINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 6543 2 245566677778999999888887763
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.99 E-value=0.2 Score=45.53 Aligned_cols=163 Identities=12% Similarity=0.117 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC---HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCC--CC--Ch
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD---GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRI--EP--QI 390 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~ 390 (529)
.|..+..++.+..++.+++.+-..-..+ .|..|. .....++..++...+.++++.+.|+...+--.- .| ..
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~l--pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGL--PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC--CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 4555555555555555555554443221 222221 112233445555556666666666665432110 11 23
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC--
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-------KIEP-----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PN-- 454 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-- 454 (529)
.++-.|...|.+..++++|+-+..+. ++.- ...+...+..++...|....|.+..+++.++. ..
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 45666666666666666655444333 2111 11233344455666666666666666665522 12
Q ss_pred --CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 455 --NGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 455 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.......++++|...|+.+.|..-|++.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2233344566666667766666655554
No 242
>PRK15331 chaperone protein SicA; Provisional
Probab=95.90 E-value=0.29 Score=39.63 Aligned_cols=90 Identities=9% Similarity=0.027 Sum_probs=71.7
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCC
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~ 437 (529)
..-+...|++++|..+|.-+..- .| +..-+..|..++-..+++++|...|... -+ .-|+..+-....++...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 33455689999999999998742 44 6777888999999999999999999876 11 2345556668889999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 009663 438 TDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~ 454 (529)
.+.|...|+.+.+ .|.
T Consensus 121 ~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 121 AAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHHHHHHHHh-Ccc
Confidence 9999999999988 443
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.89 E-value=0.029 Score=31.87 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677778888888888888888888888854
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.96 Score=40.33 Aligned_cols=171 Identities=13% Similarity=0.138 Sum_probs=108.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 303 EARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 303 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
...++++++..+....-..-.......|+..+|..+|..... . ..-+...-..+..+|...|+.+.|..++..+..
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~---~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQ---A-APENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHH---h-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 444555555444222222233455677888888888888764 2 112345556778888889999999999888753
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhH
Q 009663 383 TYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNNGGYG 459 (529)
Q Consensus 383 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 459 (529)
.. -.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -++....
T Consensus 197 ~~-~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 197 QA-QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred cc-hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 31 11112222334556666666666666666664466 66777778888889999999998887777643 4467777
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 009663 460 IMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 460 ~~l~~~~~~~g~~~~a~~~ 478 (529)
..++..+.-.|..|.+...
T Consensus 276 k~lle~f~~~g~~Dp~~~~ 294 (304)
T COG3118 276 KTLLELFEAFGPADPLVLA 294 (304)
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 8888888777755544433
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.86 E-value=0.59 Score=46.12 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=79.0
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHHcCCHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEPQIEHYGC-LVDLLGRAGRFEEALEVVKGMK-I-----EPDEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~ 439 (529)
..+.+.|.++++.+.+. -|+...|.. -.+.+...|++++|.+.|++.- . +.....+.-+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45677888888888755 466555433 3455677888888888888651 1 123445556666777888999
Q ss_pred HHHHHHHHHHhcCCCCchh-HHHHHHHHHhcCCH-------HHHHHHHHHHhhC
Q 009663 440 FAEFAVKKLIEIDPNNGGY-GIMLANIYGELGKW-------DEVRKVRKMLKDR 485 (529)
Q Consensus 440 ~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~-------~~a~~~~~~~~~~ 485 (529)
+|.+.|.++.+.+.-+..+ ....+.++...|+. ++|.++++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999988865444333 34455566677888 8888888877543
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=95.84 E-value=0.68 Score=44.24 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP 420 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 420 (529)
|......+..+....++++.|..+|++.. .+.|| ...|........-.|+.++|.+.+++. ...|
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 34444444444444555666666666655 34554 334444444445566666666666653 4444
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.80 E-value=0.024 Score=32.25 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.+|..++.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888885
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.65 E-value=0.19 Score=44.10 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=87.8
Q ss_pred ChhHHHHHhhcCC--CCChhHHHHHHHHHhcC----CCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCC------
Q 009663 61 NLTYARFIFDHLT--TPNTYLYTAMITAYASQ----PAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVL------ 128 (529)
Q Consensus 61 ~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~------ 128 (529)
++-..++.|+..+ ..|-.+|-..+..+... ++..+-....++.|.+.|+ ..|..+|+.|++.+-+..
T Consensus 49 ~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGV-erDl~vYk~LlnvfPKgkfiP~nv 127 (406)
T KOG3941|consen 49 SLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGV-ERDLDVYKGLLNVFPKGKFIPQNV 127 (406)
T ss_pred cccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcc-hhhHHHHHHHHHhCcccccccHHH
Confidence 3444566677766 56777888888777532 2667777888899999999 999999999999876543
Q ss_pred ----------CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009663 129 ----------ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMS 177 (529)
Q Consensus 129 ----------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~ 177 (529)
+-+-+..++++|...|+.||..+-..|++++.+.+.-..+..++.-.|.
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2234678999999999999999999999999988844455555555554
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.64 E-value=0.74 Score=44.81 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 009663 149 PVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLF 228 (529)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (529)
....+.++..+.+.| -.+.|+++...- ..-.....+.|+++.|.++.++.. +...|..|.....+.|++
T Consensus 295 ~~~~~~i~~fL~~~G-~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 295 KDQGQSIARFLEKKG-YPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred hhHHHHHHHHHHHCC-CHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 344666666677777 677776654321 233444556777777777666554 455777777777777777
Q ss_pred hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHH
Q 009663 229 SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAF 308 (529)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (529)
+-|.+.|.+... +..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..+++
T Consensus 364 ~lAe~c~~k~~d------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 364 ELAEECYQKAKD------------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHhhcC------------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 777777776541 33444445556666666666555555442 344444555556666666655
Q ss_pred hh
Q 009663 309 DR 310 (529)
Q Consensus 309 ~~ 310 (529)
.+
T Consensus 426 ~~ 427 (443)
T PF04053_consen 426 IE 427 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.54 E-value=0.13 Score=39.23 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=49.7
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCc---hhHHHHHHHHHhcCCH
Q 009663 399 LLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID-PNNG---GYGIMLANIYGELGKW 472 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 472 (529)
+....|+.+.|++.|.+. .+-| ....||.-..++.-.|+.++|++-+++++++. |... ..+..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 345566666666666554 3232 45566666666666666666666666666643 2211 1333344455666666
Q ss_pred HHHHHHHHHHhhCCC
Q 009663 473 DEVRKVRKMLKDRNA 487 (529)
Q Consensus 473 ~~a~~~~~~~~~~~~ 487 (529)
+.|..=|+..-+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 666666666655554
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=1.5 Score=37.97 Aligned_cols=199 Identities=12% Similarity=0.059 Sum_probs=100.7
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh--hHHHHHHHHHHHcC
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL--TSWNSMINSFALHG 330 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~ 330 (529)
|.-...++....++++|...+.+..+. .+.+...|. ....++.|.-+.+++.+-+. ..|+.....|...|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 444445666667777777666655432 111111111 11223344444444443321 24555566777777
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCC----CCChhHHHHHHHHHHhcCCh
Q 009663 331 QSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRI----EPQIEHYGCLVDLLGRAGRF 406 (529)
Q Consensus 331 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~ 406 (529)
.++-|-..+++.-+ ....-+++.|+++|++...-... ..-...+......+.+..++
T Consensus 106 spdtAAmaleKAak-------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 106 SPDTAAMALEKAAK-------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred CcchHHHHHHHHHH-------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 77766666665433 11123344444444433211000 01123444455566777777
Q ss_pred HHHHHHHHhCC-----C--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCchhHHHHHHHHHhcCCHHH
Q 009663 407 EEALEVVKGMK-----I--EPDE-VVWGSLLNGCKIYGRTDFAEFAVKKLIE----IDPNNGGYGIMLANIYGELGKWDE 474 (529)
Q Consensus 407 ~~A~~~~~~~~-----~--~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~ 474 (529)
++|-..+.+-+ + -++. ..+...+-.+.-..++..|..+++.--+ .+|++..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 77665554441 1 1221 2233444445556688888888887554 3466677777777665 5577777
Q ss_pred HHHHH
Q 009663 475 VRKVR 479 (529)
Q Consensus 475 a~~~~ 479 (529)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 66654
No 252
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=3.3 Score=42.08 Aligned_cols=143 Identities=13% Similarity=0.187 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhCCCh
Q 009663 150 VVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPD-RDVPAWNSVIAGCTQNGLF 228 (529)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 228 (529)
..+...+..+...| ++++|-...-.|...+..-|.-.+..+...++......++-.-.. -+...|..++..+..
T Consensus 393 kv~~~yI~HLl~~~-~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~---- 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEG-KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA---- 467 (846)
T ss_pred HHHHHHHHHHHhcc-hHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH----
Confidence 45666777777777 788777777777777777777777666666665554444333222 245567777777665
Q ss_pred hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHH
Q 009663 229 SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAF 308 (529)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (529)
.....+++... ..+++...-...+++.- .+..+ .- -+...-..|+..|...+++..|..++
T Consensus 468 ~~~~~F~e~i~-----~Wp~~Lys~l~iisa~~------------~q~~q-~S-e~~~L~e~La~LYl~d~~Y~~Al~~y 528 (846)
T KOG2066|consen 468 SDVKGFLELIK-----EWPGHLYSVLTIISATE------------PQIKQ-NS-ESTALLEVLAHLYLYDNKYEKALPIY 528 (846)
T ss_pred HHHHHHHHHHH-----hCChhhhhhhHHHhhcc------------hHHHh-hc-cchhHHHHHHHHHHHccChHHHHHHH
Confidence 22222333332 23433333323332210 00111 00 12223344888999999999999998
Q ss_pred hhcCCCCh
Q 009663 309 DRNSKKRL 316 (529)
Q Consensus 309 ~~~~~~~~ 316 (529)
-...+.++
T Consensus 529 lklk~~~v 536 (846)
T KOG2066|consen 529 LKLQDKDV 536 (846)
T ss_pred HhccChHH
Confidence 87776654
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.52 Score=42.54 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHH----HHHHHHHhCCCcH
Q 009663 298 CGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTF----ISLLNACTHGGLV 370 (529)
Q Consensus 298 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~----~~l~~~~~~~~~~ 370 (529)
.|+..+|-..++++.+ .|..++...=.+|...|+.+.-...++++.. ...|+...| ..+.-++...|-+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip----~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP----KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc----ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4555555555554443 2444555555555566666555555555542 223333222 1222233445555
Q ss_pred HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 371 EQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 371 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
++|++.-++.. .+.+ |.-.-.++...+...|++.++.++..+-
T Consensus 192 ~dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55555555544 2233 2333344445555555555555555544
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.39 E-value=1.1 Score=35.86 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=51.7
Q ss_pred HHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCH
Q 009663 118 PHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDI 197 (529)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 197 (529)
..++..+...+.......+++.+...+. .+...++.++..|++.+ .....+.++. ..+.......++.|.+.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~--~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD--PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC--HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3444444444555555666665555542 45555666666665543 3334444442 12223333345555555555
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhC-CChhHHHHHHHH
Q 009663 198 KNAASLFDSMPDRDVPAWNSVIAGCTQN-GLFSDAISFFRR 237 (529)
Q Consensus 198 ~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 237 (529)
+++.-++.++.. |...+..+... ++++.|.+++.+
T Consensus 86 ~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 86 EEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 555555554432 11122222223 555555555553
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.23 Score=44.65 Aligned_cols=162 Identities=10% Similarity=-0.002 Sum_probs=119.2
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHh
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG----CLVDLLGR 402 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~ 402 (529)
...|+..+|-..++++. ...+.|...+..-=.+|...|+.......++++... ..|+...|. .+..++..
T Consensus 114 ~~~g~~h~a~~~wdklL----~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLL----DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hccccccHHHHHHHHHH----HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHH
Confidence 45788888888999987 455567677777778888899999999999888753 355554443 34555668
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCHHHHH
Q 009663 403 AGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN----NGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 403 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
+|-+++|++.-++. .++| |.....+....+.-.|++.++.++..+-...-.. -..-|...+-.+...+.++.|+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 99999999999887 6555 6777778888888899999999988776542211 1233445566778889999999
Q ss_pred HHHHHHhhCCCccCCccc
Q 009663 477 KVRKMLKDRNAYKTPGCS 494 (529)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~ 494 (529)
++|+.=.-+.+.++.+.+
T Consensus 268 eIyD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 268 EIYDREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHHHHhhccchhh
Confidence 999887766666666533
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.34 E-value=1.8 Score=37.88 Aligned_cols=194 Identities=22% Similarity=0.206 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSK-----KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISL 360 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l 360 (529)
..+......+...+.+..+...+..... .....+......+...++...+...+..... ....+ .......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~ 135 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA---LDPDP-DLAEALL 135 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc---CCCCc-chHHHHH
Confidence 4445555555666666666655554331 2233455555555566666666666666643 22222 1111122
Q ss_pred HH-HHhCCCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHH
Q 009663 361 LN-ACTHGGLVEQGRAYFKLMTKTYRIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD--EVVWGSLLNGC 432 (529)
Q Consensus 361 ~~-~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~ 432 (529)
.. .+...|+++.+...+..... ..| ....+......+...++.+.+...+... ...++ ...+..+...+
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 22 45566677777777666642 122 2233333334455666777777766665 32333 45566666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
...++++.|...+..+....|.....+..+...+...|..+++...+.+.....
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666677777777777777666544455555555555566777776666665443
No 257
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.33 E-value=2.7 Score=39.93 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=76.6
Q ss_pred CCCCCCHHH-HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 009663 348 HNIRPDGVT-FISLLNACTHGGLVEQGRAYFKLMTKTYRIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD 421 (529)
Q Consensus 348 ~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 421 (529)
.-+.|+... ...+...+.+ +.+++..+.+.+... .+.+ =..+|..++....+.++...|.+.+.-. -+.|+
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~-~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS-KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 445565433 2344444444 667777777766533 3333 1457778888888899999998888776 34555
Q ss_pred HHHHHHHH-------HHHH----HcCCHHHHHHHHHHHHhcCCCCchhHHH---HHHHHHhcCC-HHHHHHHHHHHhhC
Q 009663 422 EVVWGSLL-------NGCK----IYGRTDFAEFAVKKLIEIDPNNGGYGIM---LANIYGELGK-WDEVRKVRKMLKDR 485 (529)
Q Consensus 422 ~~~~~~l~-------~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~---l~~~~~~~g~-~~~a~~~~~~~~~~ 485 (529)
...-..++ +..+ ...+...-+.+|+.+...+.+....... -+.-+.+.|. -++|+++++.+.+-
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 44322221 1111 1223344455666666655543333333 3445667776 78888888877643
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.20 E-value=1.3 Score=35.48 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=38.5
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHH
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENS 335 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 335 (529)
++..+...+.......+++.+.+.+. .+...++.++..|++.+ ..+..+.+.. ..+.......+..|.+.+.++++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 34444444555566666666555543 45556666666666532 2333333331 11222223344444444444444
Q ss_pred HHHHHHH
Q 009663 336 ICVFEEM 342 (529)
Q Consensus 336 ~~~~~~m 342 (529)
.-++.++
T Consensus 89 ~~l~~k~ 95 (140)
T smart00299 89 VELYKKD 95 (140)
T ss_pred HHHHHhh
Confidence 4444443
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.14 E-value=3.3 Score=39.94 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=25.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcccCCCC-CCHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 009663 322 MINSFALHGQSENSICVFEEMMRCQDHNIR-PDGVTFISLLNACTHGGLVEQGRAYFKLM 380 (529)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 380 (529)
+..+..+.|+.++|++.++++.+ .... -+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlk---e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLK---EFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHh---hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 44444455555555555555542 1100 11123334455555555555555555444
No 260
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.99 E-value=0.18 Score=41.80 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=64.8
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIY 435 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 435 (529)
-+...|++++|..-|..+... +++. ...|..-..++.+.+.++.|+.-..+. .+.|. ...+..-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 356678888888888877753 2222 234444455667777777777766655 55553 22333334556777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 436 GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
..+++|++-|+++++.+|....+...+++.--
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 77888888888888888876666555555433
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.99 E-value=2.2 Score=37.17 Aligned_cols=197 Identities=19% Similarity=0.129 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHh-CCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHH-
Q 009663 250 QVTLVCALSAIGHTGMLQLGKVIHGYVYRN-GLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMIN- 324 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~- 324 (529)
...+......+...+.+..+...+...... ........+......+...+++..+...+...... +.........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344445555555666666666655555442 22233444555555666666677777777655432 1122223333
Q ss_pred HHHHcCChhHHHHHHHHHhhcccCCCCC----CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHH
Q 009663 325 SFALHGQSENSICVFEEMMRCQDHNIRP----DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ--IEHYGCLVD 398 (529)
Q Consensus 325 ~~~~~~~~~~a~~~~~~m~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~ 398 (529)
.+...|+++.|...+.+.. . ..| ....+......+...++.+.+...+...... .++ ...+..+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 210 (291)
T COG0457 139 ALYELGDYEEALELYEKAL----E-LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGL 210 (291)
T ss_pred HHHHcCCHHHHHHHHHHHH----h-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhH
Confidence 6788888888888888874 2 333 2333444444466778899999999888743 333 677888888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 399 LLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888899999999999887 44554 455555555555777899999999999998885
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.88 E-value=0.1 Score=39.82 Aligned_cols=58 Identities=12% Similarity=-0.105 Sum_probs=53.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
..++...|+.+.|++.|.+++.+-|..+++|+.-+.++.-+|+.++|++=+++..+..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3457889999999999999999999999999999999999999999999998887654
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=2.4 Score=43.42 Aligned_cols=81 Identities=17% Similarity=0.045 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 437 (529)
..|+.+|.+.++.++-.++.+... . |..- .-....+..+.+.+-.++|..+-.+.+. .......++ -..++
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~-~-g~~~--fd~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ill---e~~~n 505 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCD-K-GEWF--FDVETALEILRKSNYLDEAELLATKFKK--HEWVLDILL---EDLHN 505 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCC-C-ccee--eeHHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHH---HHhcC
Confidence 345555555555555444443332 1 1110 0122234444444445555444444432 222222222 23556
Q ss_pred HHHHHHHHHH
Q 009663 438 TDFAEFAVKK 447 (529)
Q Consensus 438 ~~~A~~~~~~ 447 (529)
+++|++.+..
T Consensus 506 y~eAl~yi~s 515 (933)
T KOG2114|consen 506 YEEALRYISS 515 (933)
T ss_pred HHHHHHHHhc
Confidence 6666666553
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.52 E-value=0.32 Score=47.96 Aligned_cols=170 Identities=14% Similarity=0.125 Sum_probs=113.7
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCC-CCh---------hHHHHHHHHHhcC---CCChHHH
Q 009663 31 QLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTT-PNT---------YLYTAMITAYASQ---PAHASSA 97 (529)
Q Consensus 31 ~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~-~~~---------~~~~~ll~~~~~~---~~~~~~a 97 (529)
-++..+.+. +| .....++...+-.| |-+.+++++....+ .+. ..|+..+..++.. ..+.+.|
T Consensus 178 G~f~L~lSl-LP---p~~~kll~~vGF~g-dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 178 GLFNLVLSL-LP---PKVLKLLSFVGFSG-DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHh-CC---HHHHHHHhhcCcCC-cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 355555544 22 23457777777777 77777777766542 221 2466666555532 3678899
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHH-HhCccCCCchHHHHHHHHHHHhC---CCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 009663 98 FSLYRDMVRRGQPQPNQFIYPHVL-KSCPDVLESRGTKMVHTQIVKSG---FEQYPVVETALVNSYSRSGNDIGIARKLF 173 (529)
Q Consensus 98 ~~~~~~m~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 173 (529)
.++++.+.++ -|+...|...- +.+...|++++|.+.++...... .+.....+-.+..++.-.+ ++++|.+.|
T Consensus 253 ~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~-~w~~A~~~f 328 (468)
T PF10300_consen 253 EELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH-DWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc-hHHHHHHHH
Confidence 9999999987 56766654443 44678899999999999766421 1233455667777888888 999999999
Q ss_pred hhCCCCC---hhhHHHHH-HHHHhcCCH-------HHHHHHHhhCCC
Q 009663 174 DEMSDRN---VVSWTAMI-SGYTRVGDI-------KNAASLFDSMPD 209 (529)
Q Consensus 174 ~~~~~~~---~~~~~~ll-~~~~~~g~~-------~~A~~~~~~~~~ 209 (529)
..+.+.+ ...|.-+. .++...|+. ++|.++|.+++.
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9998732 23333333 334556777 889999988753
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.47 E-value=0.24 Score=44.25 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
++..++..+...|+.+.+.+.+++. ...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4444444455555555555554444 2233 444455555555555555555555554444
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=1.5 Score=35.71 Aligned_cols=118 Identities=13% Similarity=0.098 Sum_probs=50.0
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-----HHH
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV-----DLL 400 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-----~~~ 400 (529)
++.+..++|+.-|..+.+ .|...=.. .-..........|+...|...|+++-.. .|.+....-+. ..+
T Consensus 69 A~~~k~d~Alaaf~~lek---tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 69 AQENKTDDALAAFTDLEK---TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHcCCchHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHH
Confidence 445555666666666554 33221100 0111112234455556666666655433 22222221111 123
Q ss_pred HhcCChHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 401 GRAGRFEEALEVVKGMK--IEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
...|.+++.....+-+. -.| ....-..|.-+-.+.|++..|...|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34555555555555441 122 122223444444555555555555555544
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.16 E-value=4.4 Score=36.96 Aligned_cols=19 Identities=11% Similarity=-0.328 Sum_probs=13.2
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 009663 431 GCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~ 449 (529)
.+.+.+++++|.++|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4566778888888777554
No 268
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.16 E-value=0.1 Score=42.04 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=55.8
Q ss_pred HHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 009663 119 HVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIK 198 (529)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 198 (529)
.++..+.+.+.++....+++.+...+...+....+.++..|++.+ +.+...++++.... .-...++..|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~-~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYD-PYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTT-TCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcC-CchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 456667777778888888888877665666777888888888887 66777777764333 33344555566666666
Q ss_pred HHHHHHhhCC
Q 009663 199 NAASLFDSMP 208 (529)
Q Consensus 199 ~A~~~~~~~~ 208 (529)
+|.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 6666555544
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.98 E-value=0.71 Score=40.65 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=76.3
Q ss_pred HHHHhhcC--CCChhHHHHHHHHHHHc-----CChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC---------
Q 009663 305 RRAFDRNS--KKRLTSWNSMINSFALH-----GQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG--------- 368 (529)
Q Consensus 305 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~--------- 368 (529)
++.|.... ++|-.+|.+.+..+... +.++-....++.|.+ .|+.-|..+|..|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e---yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE---YGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH---hcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 44455544 55666777777776543 445555556677776 999999999999988776532
Q ss_pred -------cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhC
Q 009663 369 -------LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRF-EEALEVVKGM 416 (529)
Q Consensus 369 -------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 416 (529)
+-+-+++++++|. .+|+.||-.+-..|+.++++.|-. .+..++.-.|
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 3356789999997 559999999999999999988863 3444444444
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.98 E-value=4 Score=35.81 Aligned_cols=83 Identities=11% Similarity=-0.040 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHH
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALI 292 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 292 (529)
..+-.-+..-.+.|++++|.+.|+.+.... +.-+-...+...++.++.+.++++.|....++..+.-+......|..-+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344444555677888888888888887431 1112234455666667778888888888888877765554444555555
Q ss_pred HHHH
Q 009663 293 DMYG 296 (529)
Q Consensus 293 ~~~~ 296 (529)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5544
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.95 E-value=2.8 Score=33.93 Aligned_cols=110 Identities=11% Similarity=0.053 Sum_probs=64.3
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYRIEPQIE-HYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
.-...++.+.+..++..+. -+.|... .-..-...+...|+|.+|.++|+++ ...|.......|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3456778888888888887 4567533 2233344577889999999999988 334555555556655555444344
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
=...-+++.+.++ ++.+...+ ..+........|..
T Consensus 96 Wr~~A~evle~~~-d~~a~~Lv-~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGA-DPDARALV-RALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCC-ChHHHHHH-HHHHHhccccchhh
Confidence 4444555666555 44444444 33333333333333
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.89 E-value=2.4 Score=32.86 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=65.2
Q ss_pred CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC-CChhh---HHHHHHHHHhcCCHHHHHH
Q 009663 127 VLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD-RNVVS---WTAMISGYTRVGDIKNAAS 202 (529)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~-~~~~~---~~~ll~~~~~~g~~~~A~~ 202 (529)
.|..++..++..+...+. +..-+|-++--....- +-+-..++++.+-. -|... .-.++.+|++.|...
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa-~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~s---- 86 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAA-DCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLS---- 86 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH---HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-------
T ss_pred hchHHHHHHHHHHHcCcC---Cccccceeeeecchhh-chhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchH----
Confidence 455566666666555542 3334444443333333 44444454444433 12211 122333333333222
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCC
Q 009663 203 LFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL 281 (529)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 281 (529)
.....-+....+.|+-++-.+++..+.+ .-.+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 87 ----------e~vD~ALd~lv~~~kkDqLdki~~~l~k----n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 ----------EYVDLALDILVKQGKKDQLDKIYNELKK----NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp ----------HHHHHHHHHHHHTT-HHHHHHHHHHH---------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ----------HHHHHHHHHHHHhccHHHHHHHHHHHhh----ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2233445666777777777777777642 2356666777777777777777777777777777775
No 273
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.88 E-value=16 Score=42.53 Aligned_cols=311 Identities=10% Similarity=0.061 Sum_probs=168.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhCCC----C--ChhhHHHHHHHHHhcCCHHHHHHHHhh-CCCCChhhHHHHHHHHHhCC
Q 009663 154 ALVNSYSRSGNDIGIARKLFDEMSD----R--NVVSWTAMISGYTRVGDIKNAASLFDS-MPDRDVPAWNSVIAGCTQNG 226 (529)
Q Consensus 154 ~l~~~~~~~g~~~~~A~~~~~~~~~----~--~~~~~~~ll~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g 226 (529)
.+..+-.+++ .+.+|.-.++.-.. . ...-|-.+...|...++.|....+... ..+++. ...|......|
T Consensus 1388 tLa~aSfrc~-~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1388 TLARASFRCK-AYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASG 1463 (2382)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhc
Confidence 4455666778 88888888888421 1 112333444478888888877777663 333332 23444566789
Q ss_pred ChhHHHHHHHHhhhcccCCCCCC-HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHH
Q 009663 227 LFSDAISFFRRMGMEVSDNIRPN-QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEAR 305 (529)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 305 (529)
+++.|...|+.+. +..|+ ..+++-++......|.+..+.-..+-......+-....++.-+.+--+.++++...
T Consensus 1464 ~~~da~~Cye~~~-----q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1464 NWADAAACYERLI-----QKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred cHHHHHHHHHHhh-----cCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 9999999999988 44565 55677777766666776666554443332221111222333344556778888877
Q ss_pred HHHhhcCCCChhHHHHH--HHHHHHcCChh--HHHHHHHHHhhcccCCCCC--------C-HHHHHHHHHHHhCCCcHHH
Q 009663 306 RAFDRNSKKRLTSWNSM--INSFALHGQSE--NSICVFEEMMRCQDHNIRP--------D-GVTFISLLNACTHGGLVEQ 372 (529)
Q Consensus 306 ~~~~~~~~~~~~~~~~l--i~~~~~~~~~~--~a~~~~~~m~~~~~~~~~p--------~-~~~~~~l~~~~~~~~~~~~ 372 (529)
.... ..+...|... ...+.+..+-| .-.+..+.+++ .-+.| + ...|..++....-. +.+.
T Consensus 1539 ~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~---~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRE---LVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN 1611 (2382)
T ss_pred hhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHH---HhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH
Confidence 7765 4444444443 22222222211 11123333332 11111 0 01222222222110 1111
Q ss_pred HHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHHcCC
Q 009663 373 GRAYFKLMTKTYRIEPQ------IEHYGCLVDLLGRAGRFEEALEVVKGM----KIEP-----DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 373 a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~g~ 437 (529)
-.+.+ .+..++ ...|-.-+..-....+..+-.--+++. ..+| -..+|-.........|+
T Consensus 1612 ~~~~l------~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1612 SIEEL------KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHh------hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 11111 122332 112222221111111111111111111 1122 25678888888888999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 438 TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
++.|...+-++.+.. -+.++.-.+..+...|+...|+.++++..+.+..
T Consensus 1686 ~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999999998888876 4577888889999999999999999999877653
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.69 E-value=0.16 Score=28.72 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
+|..+...+...|++++|...|+++.+++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666677777788888888888888777763
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.69 E-value=1.7 Score=41.76 Aligned_cols=55 Identities=22% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPN--NGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
+..++.+.|+.++|++.++++.+..|. +..+...|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344444555555555555555543332 2334445555555555555555555544
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.47 E-value=0.17 Score=29.24 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 459 GIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
+..|+.+|.+.|++++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677888888888888888888744
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.43 E-value=7.2 Score=36.97 Aligned_cols=34 Identities=18% Similarity=-0.005 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 436 GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
+..+++...|.++.+..|.....+..++..+.+.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 7889999999999999998888888887766543
No 278
>PRK09687 putative lyase; Provisional
Probab=93.39 E-value=6.1 Score=36.01 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=40.5
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh----hHHHHHHHHhhhcccCCCCC
Q 009663 173 FDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLF----SDAISFFRRMGMEVSDNIRP 248 (529)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~p 248 (529)
++.+.++|.......+.++...|..+-...+..-+..+|...-..-+.++.+.|+. +++...+..+.. -.|
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~-----~D~ 103 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL-----EDK 103 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh-----cCC
Confidence 33334455555555555555555433333333333444555555555555555543 345555555532 244
Q ss_pred CHHHHHHHHHHhhcc
Q 009663 249 NQVTLVCALSAIGHT 263 (529)
Q Consensus 249 ~~~~~~~ll~~~~~~ 263 (529)
+...-...+.++...
T Consensus 104 d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 104 SACVRASAINATGHR 118 (280)
T ss_pred CHHHHHHHHHHHhcc
Confidence 444444444444433
No 279
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.39 E-value=0.66 Score=36.71 Aligned_cols=70 Identities=14% Similarity=0.038 Sum_probs=32.4
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 402 RAGRFEEALEVVKGM-KIEPDEVVWGSL-LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 402 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
..++.+++..+++.+ -+.|+..-...+ ...+...|++.+|+++|+...+-.+..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 355566666666555 233332221111 1223455666666666666655554334344444444444443
No 280
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=4.7 Score=34.74 Aligned_cols=56 Identities=4% Similarity=-0.192 Sum_probs=31.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH-------HHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML-------ANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.-...+++.+|+.+|++......+++-.-..+ +.++.-.++.-.+...+++..+..
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 34567889999999999887555444332222 222333345545555555554443
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.34 E-value=1.5 Score=35.67 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=69.7
Q ss_pred HhCCCHHHHHHHHhhcCCCChhHHHHHH-----HHHHHcCChhHHHHHHHHHhhcccCCCCCCHH-HHHHH--HHHHhCC
Q 009663 296 GKCGSLKEARRAFDRNSKKRLTSWNSMI-----NSFALHGQSENSICVFEEMMRCQDHNIRPDGV-TFISL--LNACTHG 367 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l--~~~~~~~ 367 (529)
.+.++.++|+.-|..+.+.+...|..|. ....+.|+...|...|.++-. ....|-.. -..-| .-.+...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~---dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA---DTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc---cCCCcchhhHHHHHHHHHHHhcc
Confidence 4556677777777776666554444432 345677888888888888754 33334322 11111 1234567
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
|.++....-.+-+... +-+.....-..|.-+-.+.|++.+|.++|..+
T Consensus 146 gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 146 GSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred ccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 7777777666665432 21122333456666777888888888888877
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.16 E-value=0.19 Score=28.97 Aligned_cols=27 Identities=11% Similarity=-0.055 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888999999999999998654
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.12 E-value=0.2 Score=30.56 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 456 GGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 456 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|.++..++.+|.+.|++++|+++++++.+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999988754
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.09 E-value=7.2 Score=36.01 Aligned_cols=167 Identities=14% Similarity=0.092 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC---HHHHHHHHHHhhccCCchHHHHHHHHHHHhC-----CCCC
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN---QVTLVCALSAIGHTGMLQLGKVIHGYVYRNG-----LDLD 284 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~ 284 (529)
..|..+.+++-+..++.+++.+-..-. .-+|..|. .....++..++...+.++++++.|+.+.+.. ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l--~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCL--GLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh--cCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 356666777777777777777666544 22244441 1223345556677777888888887766532 2233
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhc-------CCCChh------HHHHHHHHHHHcCChhHHHHHHHHHhhcc-cCCC
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRN-------SKKRLT------SWNSMINSFALHGQSENSICVFEEMMRCQ-DHNI 350 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~ 350 (529)
..++..|...|.+..++++|.-+..+. .-.|.. +...|..++...|..-.|.+..++..++. ..|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 457778888888888888876554332 112222 22233445566666666666665544310 0222
Q ss_pred CC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 351 RP-DGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 351 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
.| -......+...|...|+.+.|+.-|+...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22 11223345555666677776666666544
No 285
>PRK09687 putative lyase; Provisional
Probab=93.09 E-value=6.8 Score=35.70 Aligned_cols=222 Identities=10% Similarity=0.044 Sum_probs=114.1
Q ss_pred CCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCCh----HHHHHHHHHHHHCCCCCCCcchH
Q 009663 42 SQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHA----SSAFSLYRDMVRRGQPQPNQFIY 117 (529)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~ 117 (529)
.++..+....+..+...| ..+....+..-+.++|...-...+.++.+- |+. .++...+..+... .++...-
T Consensus 34 d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~~~~a~~~L~~l~~~---D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSKNPIERDIGADILSQL-GMAKRCQDNVFNILNNLALE---DKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccchHHHHHHHHHHHhc---CCCHHHH
Confidence 456666667777777766 444434343433456666666666666666 653 4567777666443 4555555
Q ss_pred HHHHHhCccCCCchH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC
Q 009663 118 PHVLKSCPDVLESRG--TKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVG 195 (529)
Q Consensus 118 ~~l~~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 195 (529)
...+.++...+.... ..+.++.+...-..++..+-...+.++.+.+ +.+....+..-+..+|...-...+.++++.+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-DEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 555555554432111 1122222222222335556666667777777 5444434444444455555555555555542
Q ss_pred -CHHHHHH-HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHH
Q 009663 196 -DIKNAAS-LFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIH 273 (529)
Q Consensus 196 -~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 273 (529)
+.+.+.. +...+.+++..+-..-+.++.+.|+. .|+..+-...+. ++ .....+.++...|.. ++...+
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~------~~--~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK------GT--VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC------Cc--hHHHHHHHHHhcCCH-hHHHHH
Confidence 1223333 33344556666666666677766663 444444443321 11 123455566666664 455555
Q ss_pred HHHHHh
Q 009663 274 GYVYRN 279 (529)
Q Consensus 274 ~~~~~~ 279 (529)
..+.+.
T Consensus 258 ~~l~~~ 263 (280)
T PRK09687 258 DTLLYK 263 (280)
T ss_pred HHHHhh
Confidence 555543
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=5.9 Score=34.46 Aligned_cols=207 Identities=12% Similarity=0.007 Sum_probs=107.4
Q ss_pred CCCch----hHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCC
Q 009663 41 QSQTN----FYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPN 113 (529)
Q Consensus 41 ~~~~~----~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 113 (529)
+.||. ..|..-..+|-... +++.|...+.+.. +.|...|++ . ..++.|.-+.++|.+. +--
T Consensus 23 wkad~dgaas~yekAAvafRnAk-~feKakdcLlkA~~~yEnnrslfhA-------A-KayEqaamLake~~kl---sEv 90 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAK-KFEKAKDCLLKASKGYENNRSLFHA-------A-KAYEQAAMLAKELSKL---SEV 90 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccHHHH-------H-HHHHHHHHHHHHHHHh---HHH
Confidence 55654 45666666776666 8888887766654 223322322 1 3455555555555443 122
Q ss_pred cchHHHHHHhCccCCCchHHHHHHHHHHHh--CCCCch--hHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHH
Q 009663 114 QFIYPHVLKSCPDVLESRGTKMVHTQIVKS--GFEQYP--VVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMIS 189 (529)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~--~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~ 189 (529)
...|+.....|...|.++.|-..++..-+. ++.|+. ..|..-+..+...+ +...|.++ +...-+
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d-r~~ma~el-----------~gk~sr 158 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD-RDQMAFEL-----------YGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc-hHHHHHHH-----------HHHhhh
Confidence 334555556667777777766666655432 223332 23333333333333 33333333 344455
Q ss_pred HHHhcCCHHHHHHHHhhCCC--------CCh-hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHh
Q 009663 190 GYTRVGDIKNAASLFDSMPD--------RDV-PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAI 260 (529)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~ 260 (529)
.+++...+++|-..|.+-.. ++. ..|-..|-.|.-..++..|...++.-.+.....-+-+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 66666666666655544332 111 234455556666778888888888754321112233555666676665
Q ss_pred hccCCchHHHHH
Q 009663 261 GHTGMLQLGKVI 272 (529)
Q Consensus 261 ~~~~~~~~a~~~ 272 (529)
- .|+.+++..+
T Consensus 239 d-~gD~E~~~kv 249 (308)
T KOG1585|consen 239 D-EGDIEEIKKV 249 (308)
T ss_pred c-cCCHHHHHHH
Confidence 3 4555554443
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.89 E-value=1 Score=36.43 Aligned_cols=83 Identities=20% Similarity=0.095 Sum_probs=54.7
Q ss_pred hhHHHHHHHH---HHhcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 390 IEHYGCLVDL---LGRAGRFEEALEVVKGM-KIEPDEVVWGSL-LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 390 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
..+.+.|+.. -.+.++.+++..++..+ -.+|.......+ ...+...|++.+|+.+|+.+.+..|..+..-..++.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455444 34677888888888888 455654433332 333667888888888888888777777766677766
Q ss_pred HHHhcCCH
Q 009663 465 IYGELGKW 472 (529)
Q Consensus 465 ~~~~~g~~ 472 (529)
++...|+.
T Consensus 87 CL~~~~D~ 94 (160)
T PF09613_consen 87 CLYALGDP 94 (160)
T ss_pred HHHHcCCh
Confidence 66666653
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.68 E-value=7.8 Score=36.74 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP----NNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
....+|..+...+.+.|+++.|...+.++...++ ..+.+...-+..+...|+..+|+..++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3567888899999999999999999999988552 2466777778889999999999999999887433
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.18 E-value=4.7 Score=36.97 Aligned_cols=149 Identities=11% Similarity=0.120 Sum_probs=93.3
Q ss_pred cccccHHHHHHHHHHccC-cchH----HHHHHHHHHhCCCCchhHHHHHHHHHhh--cC---CChhHHHHHhhcCCC---
Q 009663 8 LNQTLNQQVLAILERCNH-INHL----KQLQSFLTTLGQSQTNFYAFKLVRFCTL--KL---SNLTYARFIFDHLTT--- 74 (529)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~-~~~~----~~i~~~~~~~~~~~~~~~~~~ll~~~~~--~~---~~~~~A~~~~~~~~~--- 74 (529)
.+......+..++...+. ++.. ..+++.|.+.|+..+..+|-+..-.... .. .....|..+++.|.+
T Consensus 55 lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 55 LRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 445556677777777665 5443 5799999999999888776664444433 11 135678888888862
Q ss_pred ----CChhHHHHHHHHHhcCCCCh----HHHHHHHHHHHHCCCCCCCcchHHHHHHhCc-cCCC--chHHHHHHHHHHHh
Q 009663 75 ----PNTYLYTAMITAYASQPAHA----SSAFSLYRDMVRRGQPQPNQFIYPHVLKSCP-DVLE--SRGTKMVHTQIVKS 143 (529)
Q Consensus 75 ----~~~~~~~~ll~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~-~~~~--~~~a~~~~~~~~~~ 143 (529)
++-..+..++.. .. .+. +.+...|+.+.+.|..+-|..-+.+-+-++. .... ...+.++++.+.+.
T Consensus 135 fLTs~~D~~~a~lLA~--~~-~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 135 FLTSPEDYPFAALLAM--TS-EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred cccCccchhHHHHHhc--cc-ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 334455566544 22 343 4667778888887764444433433333333 2222 34678889999999
Q ss_pred CCCCchhHHHHHHHHH
Q 009663 144 GFEQYPVVETALVNSY 159 (529)
Q Consensus 144 g~~~~~~~~~~l~~~~ 159 (529)
|+++....|..+.-..
T Consensus 212 ~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 212 GVKIKYMHYPTLGLLA 227 (297)
T ss_pred CCccccccccHHHHHH
Confidence 9887777766554433
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.89 E-value=2.2 Score=35.73 Aligned_cols=58 Identities=22% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCCh------hHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRL------TSWNSMINSFALHGQSENSICVFEEMMR 344 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 344 (529)
.+..+.+.|++.|+.+.|.+.|.++.+... ..+..+|....-.+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566666666777777666666554321 2455566666666666666666666544
No 291
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.86 E-value=2.4 Score=34.90 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=40.1
Q ss_pred CCCCC-HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 417 KIEPD-EVVWGSLLNGCKIYG-----------RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 417 ~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
.+.|+ ..++..+..++...+ .+++|...|+++...+|++..+...|-.+ ++|-++..++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHH
Confidence 46675 466777776665433 36778888888888999776666555332 457777777766
Q ss_pred CCCc
Q 009663 485 RNAY 488 (529)
Q Consensus 485 ~~~~ 488 (529)
.+..
T Consensus 136 ~~~~ 139 (186)
T PF06552_consen 136 QGLG 139 (186)
T ss_dssp SSS-
T ss_pred HHhh
Confidence 6543
No 292
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.66 E-value=0.49 Score=28.12 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.+++.+...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455556666666666666666666554
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.64 E-value=0.74 Score=41.69 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=43.6
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
|.++|.+++|+..|.... .+.| ++.++..-..+|.+..++..|..-.... .+ ..-...|..-+.+-...|...+
T Consensus 107 yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 444555555555555444 2234 4455555555555555555444433332 11 0112233333344444556666
Q ss_pred HHHHHHHHHhcCCCCch
Q 009663 441 AEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~ 457 (529)
|.+-++.++++.|++..
T Consensus 184 AKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHhHHHHHhhCcccHH
Confidence 66666666666665433
No 294
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.56 E-value=3.3 Score=34.70 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=57.3
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCCCH-----HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDG-----VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCL 396 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 396 (529)
..-+...|++++|..-|..+.. -+++.. ..|..-..++.+.+.++.|+.-..+.+ .+.|+ ......-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale----~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RR 174 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE----SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERR 174 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH----hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHH
Confidence 3557778888888888887764 222221 234444456667777777777666665 33453 3334444
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEPDE 422 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p~~ 422 (529)
..+|.+...+++|++=|+.+ ...|..
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 56777777788887777776 444543
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.56 E-value=6.8 Score=32.20 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=11.0
Q ss_pred HHHHHHHhCCChhHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~ 237 (529)
.++..+...|++-+|+++.+.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 344445555555555555554
No 296
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.54 E-value=9.2 Score=33.66 Aligned_cols=56 Identities=23% Similarity=0.167 Sum_probs=42.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGG---YGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
+...|.+.|.+-.|..-++++++.-|+.+. .+..+..+|...|..++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445688899999999999999987666443 55566778889999998887765553
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.51 E-value=2.6 Score=35.27 Aligned_cols=93 Identities=13% Similarity=0.018 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhHH--
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-K--IEP--DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNNGGYGI-- 460 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~-- 460 (529)
...+..+...|.+.|+.++|++.|.++ . ..+ -...+-.++......+++..+.....++...- +.+....+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 345667777788888888888888777 1 122 23455666677777778888777777776622 22222221
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHH
Q 009663 461 --MLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 461 --~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.-+-.+...|++.+|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 1222345667888888777554
No 298
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.34 E-value=16 Score=36.21 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=93.7
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHH
Q 009663 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNA 290 (529)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 290 (529)
+..+|..-+..-.+.|+++.+.-+|+...-. +..=...|-..+.-....|+.+.+..++....+--++-.+.+.-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~----cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP----CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH----HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 4567888888888899999998888887421 111112222223333333777777777776666544333322221
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC--CChh-HHHHHHHHHHHcCChhHHH---HHHHHHhhcccCCCCCCHH--HHHHHHH
Q 009663 291 LIDMYGKCGSLKEARRAFDRNSK--KRLT-SWNSMINSFALHGQSENSI---CVFEEMMRCQDHNIRPDGV--TFISLLN 362 (529)
Q Consensus 291 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~---~~~~~m~~~~~~~~~p~~~--~~~~l~~ 362 (529)
-....-..|+++.|..+++.+.. ++.+ .-..-+....+.|+.+.+- +++..... ....+... .+.-..+
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~---~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE---GKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc---cccCcchhHHHHHHHHH
Confidence 22222345688888888776643 3322 1122233344555655555 33333322 11112111 1111111
Q ss_pred -HHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 009663 363 -ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG 404 (529)
Q Consensus 363 -~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 404 (529)
.+.-.++.+.|..++..+.. -++++...|..++......+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 11224566777777777763 33445666666666554443
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.28 E-value=0.43 Score=26.80 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999987653
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.20 E-value=0.55 Score=26.10 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=14.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455555555555555555555553
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.91 E-value=9.3 Score=32.61 Aligned_cols=156 Identities=6% Similarity=-0.037 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCC-CchhHHHHH
Q 009663 77 TYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFE-QYPVVETAL 155 (529)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l 155 (529)
+..||.+---+... |+++.|.+.|+...+.+ +....+...-.-++.-.|++.-|.+=+...-+.++. |-...|.-+
T Consensus 99 ~~vfNyLG~Yl~~a-~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 99 PEVFNYLGIYLTQA-GNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHHhc-ccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 45677776666666 88888888888887765 222222222222234457777777666655554321 222223222
Q ss_pred HHHHHhcCCCHHHHHH-HHhhCCCCChhhHHHHHHHHHh-cCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCC
Q 009663 156 VNSYSRSGNDIGIARK-LFDEMSDRNVVSWTAMISGYTR-VGDIKNAASLFDSMPDR-------DVPAWNSVIAGCTQNG 226 (529)
Q Consensus 156 ~~~~~~~g~~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g 226 (529)
.. ..- ++.+|.. +.++....|..-|...|-.|.- .=..+.+.+-...-... =..||--+...+...|
T Consensus 176 ~E---~k~-dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 176 NE---QKL-DPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HH---hhC-CHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 21 112 4555543 3344444555555444433221 11111111111111111 1235555566666666
Q ss_pred ChhHHHHHHHHhh
Q 009663 227 LFSDAISFFRRMG 239 (529)
Q Consensus 227 ~~~~A~~~~~~m~ 239 (529)
+.++|..+|+-..
T Consensus 252 ~~~~A~~LfKLai 264 (297)
T COG4785 252 DLDEATALFKLAV 264 (297)
T ss_pred cHHHHHHHHHHHH
Confidence 6666666666543
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.91 E-value=27 Score=37.90 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=81.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHH
Q 009663 154 ALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAIS 233 (529)
Q Consensus 154 ~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 233 (529)
-.++.--+.| -+.+|+.++..=.+.-...|.+....+...+.+++|.-+|+...+ ...-+.+|...|+|.+|+.
T Consensus 913 e~~n~I~kh~-Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 913 ECKNYIKKHG-LYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALS 986 (1265)
T ss_pred HHHHHHHhcc-cchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHH
Confidence 3344444555 666666555433333334455555556666777777666665543 2223566777888888888
Q ss_pred HHHHhhhcccCCCCCCHH--HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhc
Q 009663 234 FFRRMGMEVSDNIRPNQV--TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRN 311 (529)
Q Consensus 234 ~~~~m~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 311 (529)
+-.++. ..-+.. +-..|..-+...++.-+|-++..+.... ..-.+..|++...|++|..+-...
T Consensus 987 ~a~ql~------~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 987 LAAQLS------EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHhhc------CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 888763 122222 1245666677777777776666554432 223455677777788887776554
Q ss_pred CCC
Q 009663 312 SKK 314 (529)
Q Consensus 312 ~~~ 314 (529)
...
T Consensus 1053 ~~~ 1055 (1265)
T KOG1920|consen 1053 KRD 1055 (1265)
T ss_pred ccc
Confidence 433
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.78 E-value=4.4 Score=38.73 Aligned_cols=87 Identities=14% Similarity=0.073 Sum_probs=47.8
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 009663 400 LGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
+...|.++.+.+.+... -+.....+..+++......|++++|....+-++.....++.+....+......|-+|++.-
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 44556666666666555 1233445555566666666666666666666665544444444444444444556666666
Q ss_pred HHHHHhhCC
Q 009663 478 VRKMLKDRN 486 (529)
Q Consensus 478 ~~~~~~~~~ 486 (529)
.++++..-+
T Consensus 413 ~wk~~~~~~ 421 (831)
T PRK15180 413 YWKRVLLLN 421 (831)
T ss_pred HHHHHhccC
Confidence 666665443
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=23 Score=36.82 Aligned_cols=178 Identities=11% Similarity=0.055 Sum_probs=114.5
Q ss_pred HHHHHHHHHhhcCCChhHHHHHhhcCCCCChhH---HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHh
Q 009663 47 YAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYL---YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKS 123 (529)
Q Consensus 47 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~ 123 (529)
....-|....+.. -++.|..+-+.-.-+.... .....+-+.+. |++++|...|-+-... ..| ..++.-
T Consensus 336 ~le~kL~iL~kK~-ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~K-gdf~~A~~qYI~tI~~--le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKN-LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGK-GDFDEATDQYIETIGF--LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHccc--CCh-----HHHHHH
Confidence 4455666666666 7788877766543222221 22223444556 9999999988766443 233 245565
Q ss_pred CccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCh-hhHHHHHHHHHhcCCHHHHHH
Q 009663 124 CPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNV-VSWTAMISGYTRVGDIKNAAS 202 (529)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~ 202 (529)
+.........-.+++.+.+.|.. +...-+.|+.+|.+.+ |.++-.++.+....-.. .-....+..+.+.+-.++|..
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk-d~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK-DVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc-chHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHH
Confidence 66666777777888899999875 5556678999999999 99988888877763111 123455666667777777766
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 203 LFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
+-.+... +......+ +-..+++++|++++..+.
T Consensus 485 LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 485 LATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6555443 33333333 345688999999888764
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.45 E-value=2.9 Score=33.22 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=48.2
Q ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHH
Q 009663 355 VTFISLLNA---CTHGGLVEQGRAYFKLMTKTYRIEPQIE-HYGCLVDLLGRAGRFEEALEVVKGMKI-EPDEVVWGSLL 429 (529)
Q Consensus 355 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~ 429 (529)
...+.|+.. -...++.+.+..+++.+. -+.|+.. .-..-...+...|+|++|.++|++..- .+....-..|+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344445443 345789999999999997 5577532 222234457789999999999999932 33333333444
Q ss_pred HHHHH
Q 009663 430 NGCKI 434 (529)
Q Consensus 430 ~~~~~ 434 (529)
..|..
T Consensus 85 A~CL~ 89 (153)
T TIGR02561 85 ALCLN 89 (153)
T ss_pred HHHHH
Confidence 43433
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.40 E-value=24 Score=36.39 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=36.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 437 (529)
..+..|.+.|-+++-.-++.+|- .++.+|.-.--+.+++++|.++.++ .-|...|..|+..+...-.
T Consensus 639 kA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 639 KALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPE 705 (846)
T ss_pred HHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcH
Confidence 34444555555555555555442 1222333333455666666666665 3477888888877655433
No 307
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.38 E-value=26 Score=36.78 Aligned_cols=85 Identities=15% Similarity=0.077 Sum_probs=43.4
Q ss_pred hCCCHHHHHHHHhhc----CCCCh-------hHHHHHH-HHHHHcCChhHHHHHHHHHhhc-ccCCCCCCHHHHHHHHHH
Q 009663 297 KCGSLKEARRAFDRN----SKKRL-------TSWNSMI-NSFALHGQSENSICVFEEMMRC-QDHNIRPDGVTFISLLNA 363 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~----~~~~~-------~~~~~li-~~~~~~~~~~~a~~~~~~m~~~-~~~~~~p~~~~~~~l~~~ 363 (529)
...++++|..++.++ ..++. ..|+.+- ......|++++|+++.+..... .+....+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 455666666665542 22211 1344432 2234456777777776665431 112222334445555555
Q ss_pred HhCCCcHHHHHHHHHHhH
Q 009663 364 CTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~ 381 (529)
..-.|++++|..+.+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 507 AHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHhchHHHHHHHHHHHH
Confidence 656677777776665554
No 308
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.31 E-value=0.17 Score=36.74 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 443 FAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
..+++..+.+|+|......++..+...|++++|++.+-.+.++..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 445555556676666777777777777777777776666665543
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.15 E-value=0.64 Score=26.17 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999987654
No 310
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.15 E-value=0.5 Score=24.82 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
.....++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777788887777764
No 311
>PRK10941 hypothetical protein; Provisional
Probab=90.13 E-value=4.1 Score=36.64 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.--+.+|.+.|.+..|..=++...+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 455566788899999999999999999998888888888889999999999888877776654
No 312
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.88 E-value=15 Score=33.45 Aligned_cols=159 Identities=8% Similarity=0.003 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHcCChh---HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 009663 318 SWNSMINSFALHGQSE---NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG 394 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 394 (529)
+...++.+|...+..+ +|..+++.+.. +.+-+ ...+..-+..+.+.++.+++.+.+.+|.... .-....+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~--e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~ 159 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLES--EYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH--hCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHH
Confidence 6677778887777655 45555555532 12222 3445455666767888999999999998642 21333444
Q ss_pred HHHHHH---HhcCChHHHHHHHHhC---CCCCCHH-HHHH-HHHH---HHHcCC------HHHHHHHHHHHHh--cCCCC
Q 009663 395 CLVDLL---GRAGRFEEALEVVKGM---KIEPDEV-VWGS-LLNG---CKIYGR------TDFAEFAVKKLIE--IDPNN 455 (529)
Q Consensus 395 ~l~~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~~-l~~~---~~~~g~------~~~A~~~~~~~~~--~~p~~ 455 (529)
..+..+ .... ...|...+..+ .+.|... .... ++.. ....++ .+...++++.+.+ ..|-+
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 444444 3333 34455555444 3344332 1111 1111 112111 4444455554333 22323
Q ss_pred chhHH-------HHHHHHHhcCCHHHHHHHHHHHh
Q 009663 456 GGYGI-------MLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 456 ~~~~~-------~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
+.+.. .-+..+.++++|++|.+.|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 33222 22445678899999999987543
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.78 E-value=14 Score=32.73 Aligned_cols=224 Identities=13% Similarity=0.178 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCC--CCHHHHHHHHHHhhccCCchHHHHHHHHHHHh-----CCCCCcc
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIR--PNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN-----GLDLDSF 286 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 286 (529)
+...++..+.+.|++++.+..|.++..-..+.+. -+....+.++.-.+.+.+.+.-..+++.-++. +-..--.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3344566666777777777766666422111111 12334555555544445544444444432211 1111223
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCC--------C-------hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKK--------R-------LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIR 351 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 351 (529)
+-..|...|...|.+.+..++++++... | ...|..=|..|-...+-.+-..+|++.... ...-
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhi--KSAI 224 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHI--KSAI 224 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHh--hccC
Confidence 4456778888888888888888765421 1 125666778888888878888888887652 2233
Q ss_pred CCHHHHHHHHHHH-----hCCCcHHHHHHHHHHhHHhcCC--CCC---hhHHHHHHHHHHhcCChHHHHHHHH--hC---
Q 009663 352 PDGVTFISLLNAC-----THGGLVEQGRAYFKLMTKTYRI--EPQ---IEHYGCLVDLLGRAGRFEEALEVVK--GM--- 416 (529)
Q Consensus 352 p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l~~~~~~~g~~~~A~~~~~--~~--- 416 (529)
|.... ...|+-| .+.|.+++|..-|-++-+.+.- .|. .--|..|...+.+.|-- -|+ +.
T Consensus 225 PHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPy 298 (440)
T KOG1464|consen 225 PHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPY 298 (440)
T ss_pred CchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCC
Confidence 43333 3344444 3567888876555444443322 221 22345555666655521 011 11
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
+-.|.......++.+|.. ++..+-.+++.
T Consensus 299 KNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 299 KNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred CCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 224455566777777754 44444444443
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.73 E-value=12 Score=33.57 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+++.....|..+|.+.+|.++.++++..+|-+...+-.++..+...|+--+|...++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444556789999999999999999999999999999999999999998888888887753
No 315
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.71 E-value=2.4 Score=38.02 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHH-----hCCCCchhHHHHH
Q 009663 81 TAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVK-----SGFEQYPVVETAL 155 (529)
Q Consensus 81 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~l 155 (529)
..++..+... |+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 157 ~~lae~~~~~-~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 157 TKLAEALIAC-GRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3345555555 66677777777776665 56666777777777777777777776666654 3555555555444
Q ss_pred HHH
Q 009663 156 VNS 158 (529)
Q Consensus 156 ~~~ 158 (529)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
No 316
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.31 E-value=52 Score=38.81 Aligned_cols=310 Identities=10% Similarity=0.009 Sum_probs=163.4
Q ss_pred HHHHhCccCCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCCHHHHHHHHhh-CCCCChhhHHHHHHHHHhcC
Q 009663 119 HVLKSCPDVLESRGTKMVHTQIVKSGF--EQYPVVETALVNSYSRSGNDIGIARKLFDE-MSDRNVVSWTAMISGYTRVG 195 (529)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~-~~~~~~~~~~~ll~~~~~~g 195 (529)
.+..+-.+.+.+.+|...++.-..... ......+-.+...|..-+ ++|....+... ...|+. ...|......|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~-dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIH-DPDGVEGVSARRFADPSL---YQQILEHEASG 1463 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcC-CcchhhhHHHHhhcCccH---HHHHHHHHhhc
Confidence 344455677788888888877311111 112234445556888888 88888877763 333333 23455567789
Q ss_pred CHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH-HHHHHhhccCCchHHHH
Q 009663 196 DIKNAASLFDSMPDRD---VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV-CALSAIGHTGMLQLGKV 271 (529)
Q Consensus 196 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~ 271 (529)
++..|...|+.+...+ ..+++.++......|.++.++-..+-.... ..+....++ .-+.+.-+.++++....
T Consensus 1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~----~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN----RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc----cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 9999999999987633 557888888888888888888766655422 333333333 33344456677777766
Q ss_pred HHHHHHHhCCCCCccHHHH--HHHHHHhCCCHH--HHHHHHhhcC----CC-------C--hhHHHHHHHHHHHcCChhH
Q 009663 272 IHGYVYRNGLDLDSFISNA--LIDMYGKCGSLK--EARRAFDRNS----KK-------R--LTSWNSMINSFALHGQSEN 334 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~A~~~~~~~~----~~-------~--~~~~~~li~~~~~~~~~~~ 334 (529)
.+. +. +..+|.. ++....+..+-| .-.+..+.+. .+ . ...|..++....-..-...
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 654 11 2222222 222222221111 1111111111 00 0 1244444443332211111
Q ss_pred HHHHHHHHhhcccCCCCCCH------HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-----ChhHHHHHHHHHHhc
Q 009663 335 SICVFEEMMRCQDHNIRPDG------VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-----QIEHYGCLVDLLGRA 403 (529)
Q Consensus 335 a~~~~~~m~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~ 403 (529)
...+ .+..++. .-|..-+.--....+..+-+--+++..-.....| -..+|....+...+.
T Consensus 1613 ~~~l---------~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a 1683 (2382)
T KOG0890|consen 1613 IEEL---------KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA 1683 (2382)
T ss_pred HHHh---------hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc
Confidence 1111 2222222 1222222211111112222222222111111122 256888888888889
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 404 GRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 404 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
|+++.|...+-..+...-+..+--.+.-+...|+...|+.++++.++..
T Consensus 1684 G~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1684 GHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9999998777665222234455556677888999999999999999743
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.83 E-value=34 Score=35.97 Aligned_cols=216 Identities=12% Similarity=0.009 Sum_probs=116.3
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCCcc-------HHHHH-HHHHHhCCCHHHHHHHHhhcCC--------CChhHHHHHH
Q 009663 260 IGHTGMLQLGKVIHGYVYRNGLDLDSF-------ISNAL-IDMYGKCGSLKEARRAFDRNSK--------KRLTSWNSMI 323 (529)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li 323 (529)
.....++++|..+..++...-..|+.. .++.+ .......|++++|.++.+.... ..++.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 455677888888887776543333322 22222 2233456888888877764322 2455777888
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHH---HHHH--HHHhCCCc--HHHHHHHHHHhHHhcCC-CC----Chh
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTF---ISLL--NACTHGGL--VEQGRAYFKLMTKTYRI-EP----QIE 391 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~---~~l~--~~~~~~~~--~~~a~~~~~~~~~~~~~-~p----~~~ 391 (529)
.+..-.|++++|..+..+..+ ..-.-+...| ..+. ..+..+|. +.+....+......+.. .| -..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~---~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQ---MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHH---HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 888889999999988887765 2222232222 2222 23455663 33344444444332111 11 123
Q ss_pred HHHHHHHHHHhcCChHHHHHH----HHhC-CCCCC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhHH
Q 009663 392 HYGCLVDLLGRAGRFEEALEV----VKGM-KIEPD--EVV--WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN--GGYGI 460 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~----~~~~-~~~p~--~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~ 460 (529)
++..+..++.+ .+.+..- ++-- ...|. ... +..|+......|+.+.|...++++..+..+. ...|.
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 33444444444 3333322 2222 11222 222 2356677888999999999999998844222 22222
Q ss_pred HH---HH--HHHhcCCHHHHHHHHHH
Q 009663 461 ML---AN--IYGELGKWDEVRKVRKM 481 (529)
Q Consensus 461 ~l---~~--~~~~~g~~~~a~~~~~~ 481 (529)
.. +. .....|+..++...+.+
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11 11 22356888888877655
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.73 E-value=1.1 Score=40.58 Aligned_cols=87 Identities=16% Similarity=0.045 Sum_probs=67.8
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEV 475 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 475 (529)
.-|.++|.+++|+..|... ...| +++++..-..+|.+...+..|..-...++.++-.-..+|..-+.+-...|+..||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4588999999999999875 6677 8888888889999999999999999999888764555666666665666777777
Q ss_pred HHHHHHHhh
Q 009663 476 RKVRKMLKD 484 (529)
Q Consensus 476 ~~~~~~~~~ 484 (529)
.+=++.+.+
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 665555543
No 319
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.73 E-value=1.7 Score=27.67 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
...+.-++.+.|++++|.+..+.+++..|+|..+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456677899999999999999999999987665443
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.65 E-value=0.6 Score=25.92 Aligned_cols=30 Identities=30% Similarity=0.285 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 458 YGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 458 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
++..++.++.+.|++++|.+.++++.+.-.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 456788999999999999999999987643
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.55 E-value=14 Score=31.11 Aligned_cols=90 Identities=16% Similarity=0.015 Sum_probs=58.9
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHc
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEPQI----EHYGCLVDLLGRAGRFEEALEVVKGMK-IEPDEVVWGSLLNGCKIY 435 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~ 435 (529)
...+...|++++|...++..... +.|. ..-..|.......|.+++|+.+++... -.-.......-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 44567778888888888776632 2221 122345566777888888888888763 111333344556678888
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 009663 436 GRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p 453 (529)
|+-++|...|+++++..+
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 888888888888888764
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.47 E-value=14 Score=31.08 Aligned_cols=91 Identities=13% Similarity=0.004 Sum_probs=68.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 395 CLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGS-----LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
.+...+...|++++|..-++..--.|....+.. |.......|.+++|...++...+.+- .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 345678899999999999987622444444433 34457788999999999887655332 334566778999999
Q ss_pred CCHHHHHHHHHHHhhCC
Q 009663 470 GKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 470 g~~~~a~~~~~~~~~~~ 486 (529)
|+.++|+.-|++....+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999998876
No 323
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.35 E-value=15 Score=31.40 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHH--HHhCCCcHHHHHHHHHHhHHhcCCCCChhHH
Q 009663 316 LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLN--ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHY 393 (529)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 393 (529)
...||-+.--+...|+++.|.+.|+...+ +.|. .-|..+=+ ++.-.|++.-|.+-+...-+.-.-.|-...|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E-----LDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE-----LDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc-----cCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 34788888888888888888888888854 3342 11222222 2334678888877666655431112222222
Q ss_pred HHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHH
Q 009663 394 GCLVDLLGRAGRFEEALEVV-KGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN-------GGYGIMLANI 465 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~ 465 (529)
.-++ .+.-++.+|..-+ ++.. ..|..-|...+..+. .|+.. ...+++++.....++ ..+|.-|+.-
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 2222 2233555665444 3332 344444444443322 12221 123344444322222 3466777788
Q ss_pred HHhcCCHHHHHHHHHHHhhCCC
Q 009663 466 YGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 466 ~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+...|+.++|..+|+-....++
T Consensus 247 ~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HhccccHHHHHHHHHHHHHHhH
Confidence 8888999999988888776665
No 324
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.23 E-value=21 Score=32.84 Aligned_cols=136 Identities=13% Similarity=0.206 Sum_probs=70.0
Q ss_pred hhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc--cC----CchHHHHHHHHHHHhCCC---CCccHHHHHHHHHHhC
Q 009663 228 FSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH--TG----MLQLGKVIHGYVYRNGLD---LDSFISNALIDMYGKC 298 (529)
Q Consensus 228 ~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 298 (529)
+++.+.+++.|.+. |++-+..+|.+....... .. ....+..+|+.|.+..+- ++...+..++.. ..
T Consensus 78 ~~~~~~~y~~L~~~---gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~ 152 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA---GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TS 152 (297)
T ss_pred HHHHHHHHHHHHHh---ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cc
Confidence 34556677777766 777777666554333322 11 234566677777765442 222233333221 11
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH--HHHHHHHHHhCCCc--HHHHH
Q 009663 299 GSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV--TFISLLNACTHGGL--VEQGR 374 (529)
Q Consensus 299 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~ 374 (529)
++.+. -.+.++.+|+.+.+ .|+..+.. ....++..+..... ...+.
T Consensus 153 ~~~e~---------------------------l~~~~E~~Y~~L~~---~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~ 202 (297)
T PF13170_consen 153 EDVEE---------------------------LAERMEQCYQKLAD---AGFKKGNDLQFLSHILALSEGDDQEKVARVI 202 (297)
T ss_pred ccHHH---------------------------HHHHHHHHHHHHHH---hCCCCCcHHHHHHHHHHhccccchHHHHHHH
Confidence 12111 12455667777765 67665432 33333333322222 34677
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHH
Q 009663 375 AYFKLMTKTYRIEPQIEHYGCLVDL 399 (529)
Q Consensus 375 ~~~~~~~~~~~~~p~~~~~~~l~~~ 399 (529)
.+++.+.+. |+++....|..+.-.
T Consensus 203 ~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 203 ELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHc-CCccccccccHHHHH
Confidence 778888766 888776666655433
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.89 E-value=45 Score=36.32 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=49.7
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
++.--+.|-+++|+.++..-.+.-...|.+....+.....+++|.-.|+..-+ ..-.+.+|...|+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk------------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK------------LEKALKAYKECGDWR 982 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc------------HHHHHHHHHHhccHH
Confidence 33333444555555544332222223444444444555555555555554321 122344455556666
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 372 QGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 66555554421 00000111234455555556666665555555
No 326
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.83 E-value=1.8 Score=37.34 Aligned_cols=83 Identities=12% Similarity=-0.011 Sum_probs=38.3
Q ss_pred hCCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHHHcCCHHHH
Q 009663 365 THGGLVEQGRAYFKLMTKTYRIEPQI-EHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGS-LLNGCKIYGRTDFA 441 (529)
Q Consensus 365 ~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~A 441 (529)
.....+..|+..|.+.. .+.|+. .-|..-+.++.+..+++.+..-..+. .+.|+..--.. +..+......+++|
T Consensus 21 f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred cchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 33444555555555444 335543 33344444555555555554444333 44444333222 22334444555555
Q ss_pred HHHHHHHHh
Q 009663 442 EFAVKKLIE 450 (529)
Q Consensus 442 ~~~~~~~~~ 450 (529)
+..+.++..
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 555555543
No 327
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.74 E-value=9 Score=28.07 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=58.0
Q ss_pred cchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009663 26 INHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMV 105 (529)
Q Consensus 26 ~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~ 105 (529)
-+++..|-+++...+-. ...+.-.=+..+..+| ++++|..+.+.+..||...|-+|-..-. |-.+++..-+.+|.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG-~Yq~Al~l~~~~~~pdlepw~ALce~rl---Gl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRG-DYQSALQLGNKLCYPDLEPWLALCEWRL---GLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccc-hHHHHHHhcCCCCCchHHHHHHHHHHhh---ccHHHHHHHHHHHH
Confidence 35667788877766533 3333333334456677 9999999999888899998887765543 66777777777787
Q ss_pred HCCCCCCCcchHH
Q 009663 106 RRGQPQPNQFIYP 118 (529)
Q Consensus 106 ~~~~~~~~~~~~~ 118 (529)
..| .|....|.
T Consensus 96 ~sg--~p~lq~Fa 106 (115)
T TIGR02508 96 ASG--DPRLQTFV 106 (115)
T ss_pred hCC--CHHHHHHH
Confidence 777 55554443
No 328
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.45 E-value=15 Score=30.27 Aligned_cols=132 Identities=8% Similarity=0.031 Sum_probs=70.7
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CCHHHHHHHHhhC
Q 009663 98 FSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG-NDIGIARKLFDEM 176 (529)
Q Consensus 98 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~~A~~~~~~~ 176 (529)
++.++.+.+.++ +|+...+..+++.+.+.|.+... .+++..++-+|.......+-.+.... .-...|...+.++
T Consensus 14 lEYirSl~~~~i-~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNI-PVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 444555566676 77777888888888777765543 33445555555444333332221111 0122333444443
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHh
Q 009663 177 SDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRM 238 (529)
Q Consensus 177 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 238 (529)
. ..+..++..+...|++-+|.++.++...-+...-..++.+..+.++...-..+|+-.
T Consensus 89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 245566667777788888887777754443334445555555555544444444433
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.37 E-value=0.91 Score=36.48 Aligned_cols=129 Identities=11% Similarity=0.162 Sum_probs=78.4
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009663 83 MITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRS 162 (529)
Q Consensus 83 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (529)
++..+.+. +.+.....+++.+...+. ..+....+.++..|++.+..+...++++ ..+..-...++..|.+.
T Consensus 13 vi~~~~~~-~~~~~l~~yLe~~~~~~~-~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEER-NQPEELIEYLEALVKENK-ENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTT-T-GGGCTCCHHHHHHTST-C-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTT
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHhccc-ccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhc
Confidence 46666666 888888899999987764 5667888899999999888788877776 11223345667777777
Q ss_pred CCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 009663 163 GNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLF 228 (529)
Q Consensus 163 g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (529)
| -+++|.-++.++...+.. +..+...++++.|.+.+.+. ++...|..++..+...+..
T Consensus 84 ~-l~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 84 G-LYEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp T-SHHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred c-hHHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 7 777776665554321110 00011223333333333222 3567788888887766653
No 330
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.28 E-value=0.78 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=13.3
Q ss_pred CccHHHHHHHHHHhCCCHHHHH
Q 009663 284 DSFISNALIDMYGKCGSLKEAR 305 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~ 305 (529)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555666666666666666654
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.23 E-value=1.5 Score=24.53 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.++..++.+|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788999999999999999999988654
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.18 E-value=1.3 Score=26.22 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.++..++.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999998644
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.08 E-value=7.2 Score=35.25 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=70.2
Q ss_pred hCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC-Ch-----hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC
Q 009663 279 NGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK-RL-----TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP 352 (529)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p 352 (529)
.|.+....+...++..-....+++.++..+-+++.. +. .+-.+.++.+. .=++++++.++..=+. .|+.|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIq---YGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQ---YGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcch---hcccc
Confidence 344445555666666666677888888887666542 11 12222233332 3356788888887777 99999
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHh
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 383 (529)
|.++++.+|..+.+.+++..|.++.-.+..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777654
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.98 E-value=20 Score=31.18 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=28.1
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCCHHHHH---HHHHH---HHHcCCHHHHHHHHHHHHhcCCC
Q 009663 396 LVDLLGRAGRFEEALEVVKGM---KIEPDEVVWG---SLLNG---CKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~---~l~~~---~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
....-+..+++.+|.++|++. ....+..-|. .++.+ +....+.-.+...+++..+++|.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 333445566667777776665 1122222121 11111 12224555566666666666665
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.68 E-value=1.8 Score=23.18 Aligned_cols=30 Identities=30% Similarity=0.200 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
.|..+...+...|+++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555556666666666666666665555
No 336
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.54 E-value=29 Score=33.00 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=50.8
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hcCCHHHHHHHHHHHhh
Q 009663 421 DEVVWGSL---LNGCKIYGRTDFAEFAVKKLIEIDPN-NGGYGIMLANIYG-ELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 421 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 484 (529)
|...|.++ +..+.+.|-+..|.++.+-+..++|. ||-.....++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445444 45678899999999999999999998 8887777777764 77889888888887665
No 337
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.46 E-value=44 Score=34.66 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQ-------IEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
-.+++..|...++.+.+...-.|+ +..+....-.+...|+.+.|+..|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 468888899999888754322222 2222222233456799999999997
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.29 E-value=14 Score=36.66 Aligned_cols=98 Identities=17% Similarity=0.015 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+.-..+-
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHH
Confidence 4566666655544332 34456666666666666666666665542 1333444444555554444444
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 446 KKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 446 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
....+.+..|. -..+|...|+++++.+++.+
T Consensus 716 ~~~~~~g~~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGKNNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhcccch-----HHHHHHHcCCHHHHHHHHHh
Confidence 44444333222 12235556666666665543
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.11 E-value=1.6 Score=26.51 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 460 IMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 460 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467899999999999999999998654
No 340
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.85 E-value=53 Score=35.07 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=26.8
Q ss_pred HHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC
Q 009663 17 LAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT 73 (529)
Q Consensus 17 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~ 73 (529)
..+++.-+.....+.+-+.+.+.+ -|..|+-.|...| ..++|+++|....
T Consensus 482 ~~llrlen~~c~vee~e~~L~k~~------~y~~Li~LY~~kg-~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 482 GPLLRLENNHCDVEEIETVLKKSK------KYRELIELYATKG-MHEKALQLLRDLV 531 (877)
T ss_pred hhhhhccCCCcchHHHHHHHHhcc------cHHHHHHHHHhcc-chHHHHHHHHHHh
Confidence 333333333334444444444432 2666667777666 7777777776654
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.54 E-value=48 Score=34.31 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCc-------hHHHHHHHHHHHhCCCCch
Q 009663 77 TYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLES-------RGTKMVHTQIVKSGFEQYP 149 (529)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~ 149 (529)
...| .+|-.+.+. |++++|.++.......- ......+...+..+....+- +....-+++..+.....|+
T Consensus 112 ~p~W-a~Iyy~LR~-G~~~~A~~~~~~~~~~~--~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 112 DPIW-ALIYYCLRC-GDYDEALEVANENRNQF--QKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp EEHH-HHHHHHHTT-T-HHHHHHHHHHTGGGS---TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CccH-HHHHHHHhc-CCHHHHHHHHHHhhhhh--cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 3455 466677788 99999999996665543 56677888888888765332 2334444444443322233
Q ss_pred h--HHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC-----------CHHHHHHHHhhCC------CC
Q 009663 150 V--VETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVG-----------DIKNAASLFDSMP------DR 210 (529)
Q Consensus 150 ~--~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g-----------~~~~A~~~~~~~~------~~ 210 (529)
. ..-.++..|--..+... .+. .+.+-|--+=-.+++.. .+++..+.+.+.. ..
T Consensus 188 yK~AvY~ilg~cD~~~~~~~---~V~-----~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~ 259 (613)
T PF04097_consen 188 YKRAVYKILGRCDLSRRHLP---EVA-----RTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGS 259 (613)
T ss_dssp HHHHHHHHHHT--CCC-S-T---TC-------SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HHHHHHHHHhcCCccccchH---HHh-----CcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccch
Confidence 2 11122211111110010 000 11111111111111111 1112222222211 11
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCC-CCCccHHH
Q 009663 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL-DLDSFISN 289 (529)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 289 (529)
++..| ...+.-.|+++.|++++-... ....+.+.+...+.-+.-.+-.+... ..+..... .|...-+.
T Consensus 260 ~p~~Y---f~~LlLtgqFE~AI~~L~~~~-----~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~a 328 (613)
T PF04097_consen 260 NPLLY---FQVLLLTGQFEAAIEFLYRNE-----FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFA 328 (613)
T ss_dssp ----H---HHHHHHTT-HHHHHHHHHT-------T-HHHHHHHHHHHHHTT---------------------------HH
T ss_pred hHHHH---HHHHHHHhhHHHHHHHHHhhc-----cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHH
Confidence 23333 344566899999999988733 55677777777776554333222211 22221111 11114466
Q ss_pred HHHHHHHh---CCCHHHHHHHHhhcC
Q 009663 290 ALIDMYGK---CGSLKEARRAFDRNS 312 (529)
Q Consensus 290 ~l~~~~~~---~g~~~~A~~~~~~~~ 312 (529)
.||..|.+ ..+..+|.++|--+.
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGG
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 77777775 457778888876554
No 342
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.00 E-value=39 Score=32.75 Aligned_cols=119 Identities=10% Similarity=-0.056 Sum_probs=82.7
Q ss_pred HccCcchH-HHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHH
Q 009663 22 RCNHINHL-KQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSA 97 (529)
Q Consensus 22 ~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a 97 (529)
..|+...+ ++++..+......|+....... .+...| +++.+...+.... .....+-..+++..... |+++.|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg-~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l-~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLG-YYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL-ARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhh-hHHHHHHHhhchhhhhcCCchHHHHHHHhhhch-hhHHHH
Confidence 34666665 6788888776556655544433 345566 9999999887654 35556777888888888 999999
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCC
Q 009663 98 FSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFE 146 (529)
Q Consensus 98 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 146 (529)
..+-+-|....+ .+++.........-..|-++++.-.++++...+.+
T Consensus 377 ~s~a~~~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 999999988765 34444433334445667788888888888766543
No 343
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.95 E-value=13 Score=33.39 Aligned_cols=111 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhHHHHHhh-----cCCCCChhHHHHHHHHHhc-CCCChHHHHHHHHHHHHC--CCCCCCcchHHHHHHhCccCCCchHH
Q 009663 62 LTYARFIFD-----HLTTPNTYLYTAMITAYAS-QPAHASSAFSLYRDMVRR--GQPQPNQFIYPHVLKSCPDVLESRGT 133 (529)
Q Consensus 62 ~~~A~~~~~-----~~~~~~~~~~~~ll~~~~~-~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (529)
+.+|+++|+ +-.-.|...-..+++.... .+.....-.++.+-+... + .++..+...++..+++.+++...
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~--~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSK--SLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhcccc--CCChhHHHHHHHHHHhcccHHHH
Q ss_pred HHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCCHHHHHHHHhh
Q 009663 134 KMVHTQIVKS-GFEQYPVVETALVNSYSRSGNDIGIARKLFDE 175 (529)
Q Consensus 134 ~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~ 175 (529)
.++++..... ++..|...|..++......| |..-..++.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sg-D~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESG-DQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcC-CHHHHHHHhhC
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.59 E-value=9.5 Score=28.10 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVD 398 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (529)
+..+-++.+.. ..+.|+.....+.+++|.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 28 e~rrglN~l~~---~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFG---YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTT---SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhc---cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 44455555554 77888888899999999999999999999998876543 33336666654
No 345
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.36 E-value=55 Score=34.02 Aligned_cols=209 Identities=8% Similarity=-0.148 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHHcCChhHHHHHHHHH
Q 009663 266 LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK--R-LTSWNSMINSFALHGQSENSICVFEEM 342 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~~~m 342 (529)
.+.+...+....... .+......-+....+.++++.+...+..|... . ..-.-=+..++...|+.++|..+|+.+
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444433221 23334444455555667777776666666432 1 112222345555567777777777766
Q ss_pred hhcccCCCCCCHHHHHHHHHHHhCCCcHHHH-HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 009663 343 MRCQDHNIRPDGVTFISLLNACTHGGLVEQG-RAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPD 421 (529)
Q Consensus 343 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 421 (529)
.. . .+|..++.+- +.|..-.- ......... .+..+ .-..-+..+...|+...|...+..+....+
T Consensus 373 a~------~---~~fYG~LAa~-~Lg~~~~~~~~~~~~~~~--~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~ 438 (644)
T PRK11619 373 MQ------Q---RGFYPMVAAQ-RLGEEYPLKIDKAPKPDS--ALTQG--PEMARVRELMYWNMDNTARSEWANLVASRS 438 (644)
T ss_pred hc------C---CCcHHHHHHH-HcCCCCCCCCCCCCchhh--hhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 32 1 1233322211 11211000 000000000 00000 111234456677888888888877622355
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccC
Q 009663 422 EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID---PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKT 490 (529)
Q Consensus 422 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 490 (529)
......+.....+.|.++.++....+....+ -.-|..|...+..+.+.-..+.++-.--.-.+.++.|.
T Consensus 439 ~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 439 KTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 5566666666677888888887776543311 01123344455555555556665543333335555544
No 346
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.24 E-value=8 Score=34.96 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=66.1
Q ss_pred hCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCC-CCh-----hHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCC
Q 009663 39 LGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTT-PNT-----YLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQP 112 (529)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 112 (529)
.|.+.+..+...++-...... .++.+...+-.+.+ |+. .+-.+.++.+.+ -++++++.++..=+..|+ -|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~-~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk--y~pq~~i~~l~npIqYGi-F~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSRE-EIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK--YDPQKAIYTLVNPIQYGI-FP 133 (418)
T ss_pred cCCCcceeehhhhhhcccccc-chhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc--cChHHHHHHHhCcchhcc-cc
Confidence 455666666666666666555 77777776665542 221 111223333333 366778888777777787 78
Q ss_pred CcchHHHHHHhCccCCCchHHHHHHHHHHHhC
Q 009663 113 NQFIYPHVLKSCPDVLESRGTKMVHTQIVKSG 144 (529)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (529)
|.++++.+|..+.+.+++..|.++...|....
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877777776654
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.02 E-value=5.2 Score=34.12 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.+.-+..+.+.+.+.+++...+.- +-+| |...-..++..++-.|++++|..-++-+-++.|+.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344566677888888888887765 4455 55556667788888999999999888888888854
No 348
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.36 E-value=10 Score=27.61 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.+-|++.+..+-+.+|.+.+++..|+++++-.+.
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5667777777777777777777777777776664
No 349
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.99 E-value=11 Score=27.77 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 416 MKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 416 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
+.+-|++.+..+.+.+|.+.+++..|+++++-++..-.+....|-.+
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 35678888888888888888888888888888776544333344443
No 350
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.90 E-value=12 Score=27.36 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 333 ENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
-++.+-++.+.. ..+.|+.....+.+++|.+.+++..|.++|+-++.+.| .+...|..++
T Consensus 24 we~rr~mN~l~~---~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFG---YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhc---cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 344455555544 67788888888888888888888888888887764422 2344555554
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.66 E-value=7.7 Score=32.09 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC----CHHHHHHHHHHH
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG----KWDEVRKVRKML 482 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~ 482 (529)
-+++|+.-|++++.++|+...++..++.+|...+ +..+|..+|++.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3567888888889999999999999999987654 333444444444
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.34 E-value=53 Score=32.27 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.+.+....+..++.+..|..--...+..+-..|....++++|++++..+
T Consensus 183 dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 183 DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 4555566666666655555555556666666677777777777777755
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.21 E-value=5 Score=33.86 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC-------CChhhHHHHHHHHHhcCCHHHH
Q 009663 129 ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD-------RNVVSWTAMISGYTRVGDIKNA 200 (529)
Q Consensus 129 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~-------~~~~~~~~ll~~~~~~g~~~~A 200 (529)
.-+.|.+.|-.+...+.--++.....|...|.+. |.+++..++.+..+ +|+..+.+|+..+.+.|+.+.|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr--D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTKR--DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4467788888887777666777777777777754 58888888766543 4566677777777777776665
No 354
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.16 E-value=12 Score=32.46 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCHH-------HHHHHHHHHHhcC--CC----CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 425 WGSLLNGCKIYGRTD-------FAEFAVKKLIEID--PN----NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
+..+...|...|+.+ .|.+.|+++.+.. |. ...+...++....+.|+.++|.+.|.++...+-.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 334444455566543 4455555555422 22 3456777888888999999999999888766543
No 355
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.11 E-value=53 Score=32.14 Aligned_cols=240 Identities=8% Similarity=-0.011 Sum_probs=130.1
Q ss_pred hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC------CchHHHHHHHHHHHhCC-C-CCccHHHHHHHHHHhCCC
Q 009663 229 SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG------MLQLGKVIHGYVYRNGL-D-LDSFISNALIDMYGKCGS 300 (529)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~ 300 (529)
+....+|++.. ..-|+...+...|..|...- .+.....+++...+.+. . .....|..+.-.++....
T Consensus 299 s~~~~v~ee~v-----~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~ 373 (568)
T KOG2396|consen 299 SRCCAVYEEAV-----KTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE 373 (568)
T ss_pred HHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch
Confidence 34456666665 33556666666666554332 33344445555444332 1 223345555555555554
Q ss_pred HH-HHHHHHhhcCCCChhHHHHHHHHHHHc-CChhH-HHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCc-HHHH--H
Q 009663 301 LK-EARRAFDRNSKKRLTSWNSMINSFALH-GQSEN-SICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGL-VEQG--R 374 (529)
Q Consensus 301 ~~-~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~-a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a--~ 374 (529)
.. -|..+..+....+...|..-+...... .++.- -.+++..... .-..+-...|+... .++ .... .
T Consensus 374 ~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~---~~~s~~~~~w~s~~-----~~dsl~~~~~~ 445 (568)
T KOG2396|consen 374 AREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRK---QVCSELLISWASAS-----EGDSLQEDTLD 445 (568)
T ss_pred HhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH---HhcchhHHHHHHHh-----hccchhHHHHH
Confidence 33 344444455555555555444443322 12221 1222333322 22223333333333 122 1111 1
Q ss_pred HHHHHhHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHH
Q 009663 375 AYFKLMTKTYRIEPQIEHY-GCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGC--KIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 375 ~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 449 (529)
.++..+.+ -..|+..++ +.+++-+.+.|-..+|...+... .. +|+...+..++..- ...-+..-+..+|+.+.
T Consensus 446 ~Ii~a~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 446 LIISALLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 22333332 224554443 66788888999999999999888 23 44777788777642 22334788889999998
Q ss_pred hcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 450 EIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 450 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.-.-.++..|......-...|..+.+-.++.+..
T Consensus 524 ~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 524 REFGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHhCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 7443688888887777778898888888766654
No 356
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.69 E-value=17 Score=35.95 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hcCCHHHHHHHHHHH
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPN-NGGYGIMLANIYG-ELGKWDEVRKVRKML 482 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 482 (529)
+..+.+.|-+..|.++.+-+.+++|. ||-....+++.|+ ++.+|.=.+++++..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34456677777777777777777776 6766666666664 556676666666666
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.38 E-value=5.5 Score=39.20 Aligned_cols=97 Identities=18% Similarity=0.067 Sum_probs=66.2
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFA 441 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 441 (529)
..|+...|...+..+. ...| .....-.|.+...+.|-..+|-.++.+. .+ ...+.++..+..++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3577777877777665 3345 2334455666666777777777766554 22 33466777778888888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHH
Q 009663 442 EFAVKKLIEIDPNNGGYGIMLANI 465 (529)
Q Consensus 442 ~~~~~~~~~~~p~~~~~~~~l~~~ 465 (529)
++.|+.+.+..|+++..-..|..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 888888888888887777666544
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.05 E-value=59 Score=31.97 Aligned_cols=176 Identities=12% Similarity=0.085 Sum_probs=115.8
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHH-
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSKK--RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFI- 358 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~- 358 (529)
..|.....+++..+..+-++.-.+.+..+|..- +-..|..++.+|..+ ..+.-..+|+++.+ .. -|...+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve---~d--fnDvv~~R 136 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE---YD--FNDVVIGR 136 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH---hc--chhHHHHH
Confidence 345566677888888888888888888777643 445788888888887 55777888888765 32 2333333
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHH
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ------IEHYGCLVDLLGRAGRFEEALEVVKGM----KIEPDEVVWGSL 428 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l 428 (529)
.|..-|.+ ++.+.+..+|.++..+ +-|. ...|..|...- ..+.+..+.+...+ +...-...+.-+
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 34444444 7778888888887653 2331 22444443321 34566666666665 333345555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
-.-|....++++|++++..+++.+..+..+.-.++.-+..
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 6678888999999999999999887777766666665544
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.46 E-value=15 Score=31.22 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=24.7
Q ss_pred cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 329 HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 329 ~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
..+.+++..++.+..++.+.+-.+|...+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555665555555443344445555555666666555555554
No 360
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.87 E-value=80 Score=32.75 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=12.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCC
Q 009663 466 YGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 466 ~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|.-+|+++.|++++.+....-+
T Consensus 437 y~La~~~d~vl~lln~~Ls~~l 458 (613)
T PF04097_consen 437 YHLAEEYDKVLSLLNRLLSQVL 458 (613)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 3344567777777766655444
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.25 E-value=6.6 Score=27.32 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEV 412 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 412 (529)
..++.++|+..|..+.++..-.|+ -.++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666544221222 23445555666666666555443
No 362
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.09 E-value=33 Score=31.38 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCCCchhHH
Q 009663 440 FAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 440 ~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.|.+...++.+.+|.-|.+..
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 477788888888886554443
No 363
>PRK12798 chemotaxis protein; Reviewed
Probab=78.45 E-value=65 Score=30.89 Aligned_cols=180 Identities=15% Similarity=0.242 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHhhcCCC----ChhHHHHHHHH-HHHcCChhHHHHHHHHHhhcccCCCCCCHH----HHHHHHHHHhCCC
Q 009663 298 CGSLKEARRAFDRNSKK----RLTSWNSMINS-FALHGQSENSICVFEEMMRCQDHNIRPDGV----TFISLLNACTHGG 368 (529)
Q Consensus 298 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~----~~~~l~~~~~~~~ 368 (529)
.|+..++.+.+..+... .+..|-.|+.+ .....++.+|+++|+...- ..|-.. ...--+......|
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL-----laPGTLvEEAALRRsi~la~~~g 199 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL-----LAPGTLVEEAALRRSLFIAAQLG 199 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH-----hCCchHHHHHHHHHhhHHHHhcC
Confidence 58899999999887643 34466666654 3455688999999998743 345332 2333344566788
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQIEHY-GCLVDLLGRAG---RFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFA 444 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 444 (529)
+.+++..+-.....++...|-..-| ..+..++.+.+ ..+....++..|.-.--...|..+...-...|+.+.|...
T Consensus 200 ~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 200 DADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred cHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9888877777766665555643333 33333443333 4555666677774233466888888888889999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHH-----hcCCHHHHHHHHHHHh
Q 009663 445 VKKLIEIDPNNGGYGIMLANIYG-----ELGKWDEVRKVRKMLK 483 (529)
Q Consensus 445 ~~~~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~~~ 483 (529)
-+++..+... .......+..|. -..+++++.+.+..+-
T Consensus 280 s~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 280 SERALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9999886632 222222233332 3355666666665553
No 364
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.24 E-value=35 Score=34.10 Aligned_cols=156 Identities=17% Similarity=0.074 Sum_probs=98.9
Q ss_pred HHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCH
Q 009663 222 CTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSL 301 (529)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 301 (529)
..-.|+++.|..++-.+. ...-+.+...+.+.|..++|+++ ...|+. -.+...+.|++
T Consensus 596 ~vmrrd~~~a~~vLp~I~----------k~~rt~va~Fle~~g~~e~AL~~-------s~D~d~-----rFelal~lgrl 653 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP----------KEIRTKVAHFLESQGMKEQALEL-------STDPDQ-----RFELALKLGRL 653 (794)
T ss_pred HhhhccccccccccccCc----------hhhhhhHHhHhhhccchHhhhhc-------CCChhh-----hhhhhhhcCcH
Confidence 344566666655444332 12233444455566665555443 222222 23455677888
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 302 KEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 302 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
+.|.++..+ ..+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+....+-....
T Consensus 654 ~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 654 DIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRARD------------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhcc------------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 888887654 33566899999999999999999999988754 5667777777788776655555555
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 009663 382 KTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEP 420 (529)
Q Consensus 382 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 420 (529)
+. |. . |.-..+|...|+++++++++.+-+.-|
T Consensus 720 ~~-g~-~-----N~AF~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 720 KQ-GK-N-----NLAFLAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred hh-cc-c-----chHHHHHHHcCCHHHHHHHHHhcCcCc
Confidence 43 32 2 223456778899999999987764334
No 365
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.96 E-value=6.7 Score=21.28 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009663 436 GRTDFAEFAVKKLIEIDPNNGGYGIMLANI 465 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 465 (529)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888889999998888888887776543
No 366
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.92 E-value=52 Score=33.92 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=26.5
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 399 LLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.+++.|.+++..++|+-. ..+.+-.-.+++.+|++..+.|.++.|.
T Consensus 353 LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 353 LLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 345566665555555332 1233334466777777777777777654
No 367
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.90 E-value=1.2e+02 Score=33.24 Aligned_cols=246 Identities=10% Similarity=0.011 Sum_probs=120.6
Q ss_pred CCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCH-HHHHHHHhhCCCCChhhHHHHHH
Q 009663 111 QPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDI-GIARKLFDEMSDRNVVSWTAMIS 189 (529)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~~A~~~~~~~~~~~~~~~~~ll~ 189 (529)
.+|..+-...+..+.+.+..+ +...+..+.+ .++...-...+.++.+.+ .. .....+...+..+|..+-...+.
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~-~~~~~~~~L~~~L~~~d~~VR~~A~~ 706 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELV-EVLPPAPALRDHLGSPDPVVRAAALD 706 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHH-hccCchHHHHHHhcCCCHHHHHHHHH
Confidence 455566666666666655433 3333434432 234444444444444332 21 11122223333355555555555
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchH-
Q 009663 190 GYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQL- 268 (529)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~- 268 (529)
.+...+.- ....++..+.++|...-...+.++.+.+..+. +. .. -..++...-.....++...+..+.
T Consensus 707 aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~-~~------l~D~~~~VR~~aa~aL~~~~~~~~~ 775 (897)
T PRK13800 707 VLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---VA-GA------ATDENREVRIAVAKGLATLGAGGAP 775 (897)
T ss_pred HHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HH-HH------hcCCCHHHHHHHHHHHHHhccccch
Confidence 55543321 12234455666676666666666665544322 11 12 124455555555556655554332
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHH-HHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhccc
Q 009663 269 GKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARR-AFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQD 347 (529)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 347 (529)
+...+..+.+ .++..+-...+.++...|..+.+.. +...+..++...-...+.++...+. +++...+..+..
T Consensus 776 ~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~--- 848 (897)
T PRK13800 776 AGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT--- 848 (897)
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---
Confidence 2333333332 2355666667777777776554432 3334444555555556666666665 344455444432
Q ss_pred CCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 348 HNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 348 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
.|+...-...+.++.+......+...+..+.+
T Consensus 849 ---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 ---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred ---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 35555555666666665334455555655554
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.88 E-value=5.2 Score=21.12 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.++..++.++...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46778899999999999999999888754
No 369
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.43 E-value=17 Score=29.03 Aligned_cols=64 Identities=20% Similarity=0.093 Sum_probs=47.4
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 406 FEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 406 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
-+.|.++.+-|| ...............|++..|.++.+.++..+|++..+....+.+|.+.|..
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456777888885 2344444556677899999999999999999999999999998888776543
No 370
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.32 E-value=20 Score=25.64 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHH
Q 009663 269 GKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 337 (529)
+.++++.+.+.|+- +......+-.+-...|+.+.|+++++.+. .+...|..++.++...|..+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 34566666666642 33333333332335688999999999988 888888888888888887665543
No 371
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=75.52 E-value=31 Score=25.75 Aligned_cols=79 Identities=13% Similarity=0.060 Sum_probs=49.9
Q ss_pred CcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009663 25 HINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDM 104 (529)
Q Consensus 25 ~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 104 (529)
..++|..|.+++...+- ....+.-.-+..+.++| ++++|+..=.....||...|-+|-..- . |-.+++...+.++
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG-~Yq~ALl~~~~~~~pdL~p~~AL~a~k--l-GL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRG-DYQEALLLPQCHCYPDLEPWAALCAWK--L-GLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT--HHHHHHHHTTS--GGGHHHHHHHHHH--C-T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhH-HHHHHHHhcccCCCccHHHHHHHHHHh--h-ccHHHHHHHHHHH
Confidence 44667888888887765 34444444445566777 899995554555578888887765544 3 7777888888877
Q ss_pred HHCC
Q 009663 105 VRRG 108 (529)
Q Consensus 105 ~~~~ 108 (529)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 7666
No 372
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.49 E-value=2.1 Score=39.01 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=61.9
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEV-VWGSLLNGCKIYGRTDFAE 442 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~ 442 (529)
..|.++.|++.|...++. .| ....|..-..++.+.+++..|++=+... .+.||.. -|-.-..+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhccccccccc---CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 346666666666666532 33 3444555555566666666666665554 4455432 2322333444556666666
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 443 FAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
..+..+.+++- +..+-..+-...-+.+..++-...+++.++.
T Consensus 203 ~dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 203 HDLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 66666666554 3344444444455555555555555554433
No 373
>PRK10941 hypothetical protein; Provisional
Probab=74.41 E-value=18 Score=32.60 Aligned_cols=69 Identities=14% Similarity=0.072 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
.+.|-.+|.+.++++.|++..+.+ .+.| ++.-+.--.-.|.+.|.+..|..-++..++..|+++.+-..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 345666788888888888888887 5555 45566666777888888999998888888888877665443
No 374
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.30 E-value=35 Score=26.85 Aligned_cols=72 Identities=21% Similarity=0.132 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-C-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 009663 387 EPQIEHYGCLVDLLGRAGRFE---EALEVVKGM-K-IEP--DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGY 458 (529)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 458 (529)
.++..+--.+..++.+..+.+ +-+.+++.. + -.| .......|.-++.+.++++.+.++.+..++..|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 556666666667777666544 445566665 2 233 34455556667888888888888888888888866443
No 375
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.17 E-value=40 Score=29.03 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
+.-++.+.+.+..++++...++-.+ ..+-|..+-..++..+|-.|++++|..-++...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVk----akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVK----AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh----cCCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3445566666666666666655442 122233444455566666666666665555543
No 376
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.11 E-value=14 Score=27.05 Aligned_cols=54 Identities=13% Similarity=0.061 Sum_probs=37.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC----C-----chhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPN----N-----GGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
..+.|++.+|.+.+.+....... . ......++......|++++|...+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678888887777776652211 1 233455677778889999999999888654
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.43 E-value=40 Score=26.32 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=30.6
Q ss_pred HHHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 440 FAEFAVKKLIE--IDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 440 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
.+.++|..|.. ++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777776 4455677777788888888888888888764
No 378
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.68 E-value=66 Score=28.22 Aligned_cols=113 Identities=11% Similarity=0.048 Sum_probs=67.6
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHH-HHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhc
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTF-ISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE-HYGCLVDLLGRA 403 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~ 403 (529)
|....+++.|+..|.+. ..+.|+..+| +.-+.++.+..+++.+..--.+.. .+.||.. ....+.......
T Consensus 20 ~f~~k~y~~ai~~y~ra-----I~~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRA-----ICINPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred ccchhhhchHHHHHHHH-----HhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhh
Confidence 44556777888866666 5677777554 455666777777777776666555 5567643 333445556666
Q ss_pred CChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 404 GRFEEALEVVKGM-------KIEPDEVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 404 g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
..+++|...+++. ++.+...++..|..+-...=...+..++.+
T Consensus 92 ~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred ccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 7777777776665 345556666666665333223334444433
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.48 E-value=80 Score=28.65 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHH-----hCCCCCccHH
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYR-----NGLDLDSFIS 288 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 288 (529)
++.....|...|.+.+|.++.+... .+.| +...+-.++..+...|+--.+..-++.+.+ .|+..+..++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~l-----tldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRAL-----TLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHh-----hcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4445577888999999999998887 3444 566677788888888887777776666543 4555444443
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.00 E-value=18 Score=30.81 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 419 EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 419 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
.|++.++..++.++...|+.++|.+..+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444444444444555555555555555554444
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.95 E-value=14 Score=25.83 Aligned_cols=45 Identities=20% Similarity=0.030 Sum_probs=30.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhH---HHHHHHHHhcCCHHHHHHH
Q 009663 434 IYGRTDFAEFAVKKLIEIDPNNGGYG---IMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 434 ~~g~~~~A~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~a~~~ 478 (529)
...+.++|+..|+++++..++.+.-+ -.++.+|...|++.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888887665544433 3345567777888777766
No 382
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=69.45 E-value=46 Score=25.52 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCchhHHH----HHHHHHhcCCHHHHHHHHHHH
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIE-------IDPNNGGYGIM----LANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~ 482 (529)
++..|..++...|++++++...++++. ++.+....|.. -+.++...|+.++|...|++.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 344445556666666655544444433 44444443333 234556668888887777654
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.87 E-value=67 Score=28.92 Aligned_cols=87 Identities=10% Similarity=0.108 Sum_probs=51.4
Q ss_pred HHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh-
Q 009663 219 IAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGK- 297 (529)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 297 (529)
|++++..++|.+++.+.-+--+ ....++|...-. .|-.|.+.+.+..+.++-..-.+..-..+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq-~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQ-VPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhc-CcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 5777888888887766544432 122455544333 333466777777777776666654333344446666655543
Q ss_pred ----CCCHHHHHHHH
Q 009663 298 ----CGSLKEARRAF 308 (529)
Q Consensus 298 ----~g~~~~A~~~~ 308 (529)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 57777777765
No 384
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.84 E-value=21 Score=25.46 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=15.8
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 009663 165 DIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIK 198 (529)
Q Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 198 (529)
+.+.|.+++..+. ..+..|..++.++...|.-+
T Consensus 51 ~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 51 NESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 4455555555554 44444444444444444433
No 385
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.59 E-value=85 Score=28.32 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 460 IMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 460 ~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.-++.++.+.|++.+|+.++..+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 346677788888888888766654
No 386
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=68.33 E-value=38 Score=30.75 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=11.3
Q ss_pred HHHHHHHHhhccCCchHHH
Q 009663 252 TLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~ 270 (529)
+|..++.+++..|+.+..+
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 4555666666666655443
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.27 E-value=24 Score=30.02 Aligned_cols=56 Identities=21% Similarity=0.163 Sum_probs=40.8
Q ss_pred hCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 009663 365 THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP 420 (529)
Q Consensus 365 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 420 (529)
....+.+......+.+.+.....|++.+|..++.++...|+.++|.++.+++ ..-|
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3555655555555555444456889999999999999999999999988888 4445
No 388
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.66 E-value=1.2e+02 Score=29.06 Aligned_cols=15 Identities=0% Similarity=-0.062 Sum_probs=10.1
Q ss_pred CcHHHHHHHHHHhHH
Q 009663 368 GLVEQGRAYFKLMTK 382 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~ 382 (529)
+++....++++++..
T Consensus 318 sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 318 SKYASCLELLREIKP 332 (466)
T ss_pred hhHHHHHHHHHHhcc
Confidence 567777777777654
No 389
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.11 E-value=46 Score=26.20 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHhCCC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 351 RPDGVTFISLLNACTHGG---LVEQGRAYFKLMTKTYRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 351 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.++..+--.+..++.+.. +..+.+.+++++.+. -.| .......|.-++.+.+++++++++++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 444444444445555443 455666677776641 123 2334444556677777777777776655
No 390
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.09 E-value=4.7 Score=38.69 Aligned_cols=100 Identities=11% Similarity=0.122 Sum_probs=74.6
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEPQIEH-YGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGR 437 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 437 (529)
+..+...+.++.|..++.++. .+.||... |..-..++.+.+++..|+.=+... ...|+ ...|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 445567789999999999998 45786444 444458889999999888766655 66664 3455555567778889
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 438 TDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
+.+|...|+....+.|+++.+...+-
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 99999999999999998776666553
No 391
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.68 E-value=1.6e+02 Score=30.19 Aligned_cols=275 Identities=9% Similarity=-0.002 Sum_probs=149.7
Q ss_pred HHHHHHHHhhCCCC-ChhhHHHHHHH-----HHhCCChhHHHHHHHHhhh----cccCCCCCCHHHHHHHHHHhhccC--
Q 009663 197 IKNAASLFDSMPDR-DVPAWNSVIAG-----CTQNGLFSDAISFFRRMGM----EVSDNIRPNQVTLVCALSAIGHTG-- 264 (529)
Q Consensus 197 ~~~A~~~~~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~----~~~~~~~p~~~~~~~ll~~~~~~~-- 264 (529)
...|.+.++...+. ++..-..+... +....+.+.|+.+|+.+.. ....+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776543 33333333322 4456789999999988854 10013 2223444555555432
Q ss_pred ---CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC---CCHHHHHHHHhhcCCCCh-hHHHHHHHHHH----HcCChh
Q 009663 265 ---MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC---GSLKEARRAFDRNSKKRL-TSWNSMINSFA----LHGQSE 333 (529)
Q Consensus 265 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~-~~~~~li~~~~----~~~~~~ 333 (529)
+...|..++.+..+.|.+ +... .+..+|... .+...|.++|....+.+- ..+-.+..+|. ...+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 566788999888888753 3322 233333332 357789999887765543 33333333332 335778
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH---HHh----cCCh
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDL---LGR----AGRF 406 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~----~g~~ 406 (529)
.|..++.+..+ .| .|...--...+..+.. +.++.+.-.+..+... |.......-..++.. ... ..+.
T Consensus 382 ~A~~~~k~aA~---~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 382 LAFAYYKKAAE---KG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred HHHHHHHHHHH---cc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccch
Confidence 88888888876 66 3432222333334444 5665555555444432 322211111111111 111 2245
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-C--CHHHHHHHH
Q 009663 407 EEALEVVKGMKIEPDEVVWGSLLNGCKIY----GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL-G--KWDEVRKVR 479 (529)
Q Consensus 407 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~ 479 (529)
+.+...+.+....-+......+.+.|..- .+++.|...+..+.... ......++..+... | .+..|.+++
T Consensus 456 ~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred hHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 56666666664344555556666654432 35788888888877765 55666666666443 1 157788888
Q ss_pred HHHhhCC
Q 009663 480 KMLKDRN 486 (529)
Q Consensus 480 ~~~~~~~ 486 (529)
++..+.+
T Consensus 533 ~~~~~~~ 539 (552)
T KOG1550|consen 533 DQASEED 539 (552)
T ss_pred HHHHhcC
Confidence 7776654
No 392
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.18 E-value=2e+02 Score=31.10 Aligned_cols=28 Identities=32% Similarity=0.562 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHC
Q 009663 79 LYTAMITAYASQPAHASSAFSLYRDMVRR 107 (529)
Q Consensus 79 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 107 (529)
-|..|+..|... |..++|+++|.+....
T Consensus 506 ~y~~Li~LY~~k-g~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATK-GMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhc-cchHHHHHHHHHHhcc
Confidence 477889999988 9999999999998763
No 393
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.93 E-value=68 Score=25.71 Aligned_cols=93 Identities=10% Similarity=0.148 Sum_probs=67.6
Q ss_pred HHHHHhCCCCch--hHHHHHHHHHhhcCCChhHHHHHhhcCC---------CCChhHHHHHHHHHhcCCCC-hHHHHHHH
Q 009663 34 SFLTTLGQSQTN--FYAFKLVRFCTLKLSNLTYARFIFDHLT---------TPNTYLYTAMITAYASQPAH-ASSAFSLY 101 (529)
Q Consensus 34 ~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~~~~-~~~a~~~~ 101 (529)
..|.+.+.+++. ...|.++...+..+ ++.....+++.+. ..+...|+.++.+.... .. --.+..+|
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~-nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnS-sSaK~~~~~Lf 103 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQ-NFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNS-SSAKLTSLTLF 103 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccC-hHHHHHHHHHH
Confidence 344555666554 45688888888777 8888888888775 24556788889888665 44 45678888
Q ss_pred HHHHHCCCCCCCcchHHHHHHhCccCCC
Q 009663 102 RDMVRRGQPQPNQFIYPHVLKSCPDVLE 129 (529)
Q Consensus 102 ~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (529)
..|.+.+. +++..-|..+++++.+-..
T Consensus 104 ~~Lk~~~~-~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 104 NFLKKNDI-EFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HHHHHcCC-CCCHHHHHHHHHHHHcCCC
Confidence 88888776 8888888888888766533
No 394
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.86 E-value=1.8e+02 Score=30.22 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=93.4
Q ss_pred HhCCCHHHHHHHHhhcCCC-----C-------hhHHHHHHHHHHHcCChhHHHHHHH--------HHhhcccCCCCCCHH
Q 009663 296 GKCGSLKEARRAFDRNSKK-----R-------LTSWNSMINSFALHGQSENSICVFE--------EMMRCQDHNIRPDGV 355 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~~~-----~-------~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~~~~p~~~ 355 (529)
+-.+++..|...++.+... + ...+....-.+...|+.+.|+..|. .... .+...+..
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~---~~~~~El~ 448 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANR---KSKFRELY 448 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhcc---CCcchHHH
Confidence 3568888888888766531 1 1123333344556799999999997 3332 44444444
Q ss_pred HHHHH----HHHHhCCCcHHH--HHHHHHHhHHhcCCCCC--hhHHHH-HHHHHHhcC---------ChHHHHHHH-HhC
Q 009663 356 TFISL----LNACTHGGLVEQ--GRAYFKLMTKTYRIEPQ--IEHYGC-LVDLLGRAG---------RFEEALEVV-KGM 416 (529)
Q Consensus 356 ~~~~l----~~~~~~~~~~~~--a~~~~~~~~~~~~~~p~--~~~~~~-l~~~~~~~g---------~~~~A~~~~-~~~ 416 (529)
.+..+ |.-+.......+ +..+++.+.....-.|+ ..++.. ++.++...- .+.++++.. +..
T Consensus 449 ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~ 528 (608)
T PF10345_consen 449 ILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKL 528 (608)
T ss_pred HHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhh
Confidence 43332 111112222333 67777776543222332 223333 333332211 133444444 333
Q ss_pred CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCch-hH-----HHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 417 KIEPDE-VVWGSLLNGCKIYGRTDFAEFAVKKLIEI---DPNNGG-YG-----IMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 417 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
+..--. .+++.+...+. .|+..+........... .|+... .| ..+...+...|+.++|.....+..
T Consensus 529 ~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 529 GNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 311112 22333333344 78888776666655542 233222 23 245556788899999999887764
No 395
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.66 E-value=89 Score=27.57 Aligned_cols=50 Identities=8% Similarity=-0.140 Sum_probs=22.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
...|++-++++....++...|.+..+|..-+.+....=+.++|..=|.++
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443
No 396
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.60 E-value=53 Score=30.30 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC--C--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM--K--IEP--DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~--~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
|--=..-|.+..++..|...|.+- . -.| +...|+.-..+-...|++..++.-..+++..+|.+...+..-+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333345677888889998888765 1 133 3566777677777789999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHH
Q 009663 467 GELGKWDEVRKVRKML 482 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~ 482 (529)
....++++|...+++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999988888877655
No 397
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.44 E-value=18 Score=21.96 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=8.0
Q ss_pred HHHHHcCChhHHHHHHHHH
Q 009663 324 NSFALHGQSENSICVFEEM 342 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m 342 (529)
.+|...|+.+.|.+++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEV 25 (44)
T ss_pred HHHHHcCChHHHHHHHHHH
Confidence 3344444444444444443
No 398
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=63.35 E-value=1.4e+02 Score=28.40 Aligned_cols=197 Identities=12% Similarity=0.073 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC----CCcHHHHHHHHHHhHH--hcCCCCC--
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH----GGLVEQGRAYFKLMTK--TYRIEPQ-- 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~--~~~~~p~-- 389 (529)
.+..++..|...++|+.--+...-+.. ++|. .-.....++.-+.. ..+.+--+.+.+.+.. ...+-..
T Consensus 54 v~~~i~~lc~~~~~w~~Lne~i~~Lsk--krgq--lk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvE 129 (439)
T KOG1498|consen 54 VLEEIMKLCFSAKDWDLLNEQIRLLSK--KRGQ--LKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVE 129 (439)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH--HhhH--HHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEEeeh
Confidence 566667777778888777666665543 1221 11222223322211 1122222222222221 1111111
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC------CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----
Q 009663 390 -IEHYGCLVDLLGRAGRFEEALEVVKGMKIEP------DEVV--WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN----- 455 (529)
Q Consensus 390 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----- 455 (529)
...-..|..-+-..|++++|..++.+.+++. ...+ .---+..|...+|+-.|.-+-+++.....+.
T Consensus 130 RarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 130 RARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 1222446677889999999999999884221 1111 1122456788899999998888887633222
Q ss_pred --chhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHH
Q 009663 456 --GGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEI 518 (529)
Q Consensus 456 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (529)
..+|..++....+.+.+=++-+.++.+..-|......-.|+.+-.....|+....-.+--++.
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdl 274 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDL 274 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHHH
Confidence 246777888888889999999999999988877766666776665565666655433333333
No 399
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.00 E-value=13 Score=32.01 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=28.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 434 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+.++.+.+.+++.+++++-|+....|..++....++|+++.|.+.+++..+.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4455555555555555555555555555555555555555555555555443
No 400
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.13 E-value=45 Score=33.29 Aligned_cols=135 Identities=18% Similarity=0.084 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHhCC--CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhC-CCCC--CHH
Q 009663 350 IRPDGVTFISLLNACTHG--GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLG-RAGRFEEALEVVKGM-KIEP--DEV 423 (529)
Q Consensus 350 ~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p--~~~ 423 (529)
.-|+..+..+++.-.... ...+-+-.++-.|.+ .+.|--...+ +...|. -.|+...|...+... ...| ..+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 345666655554433321 223344445554432 2333222222 233344 468999999888876 4444 233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
....|.....+.|-...|-.++.+.+.+....|-++..+++++.-..+.+.|++.+++..+...
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 4556677778888888999999999998877889999999999999999999999999877654
No 401
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.19 E-value=1.1e+02 Score=27.72 Aligned_cols=85 Identities=12% Similarity=-0.026 Sum_probs=53.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHH---
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM---KIEPDEVVWGSLLNGCK--- 433 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~--- 433 (529)
=|.+++..+++.++..+.-.--+. .-+..+.+...=|-.|.+.|.+..+.++-... +-+-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 367788888888877655433321 11123455555566788888888887776655 22333445766666544
Q ss_pred --HcCCHHHHHHHH
Q 009663 434 --IYGRTDFAEFAV 445 (529)
Q Consensus 434 --~~g~~~~A~~~~ 445 (529)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 468888888877
No 402
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=60.34 E-value=15 Score=33.07 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=30.5
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 402 RAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 402 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
+.|+.++|..+|+.. ...| ++....-+....-..++.-+|-++|-+++.+.|.+..+..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 455666666666544 3334 2334444444444445555666666666666665544433
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.08 E-value=63 Score=23.51 Aligned_cols=20 Identities=10% Similarity=-0.009 Sum_probs=11.6
Q ss_pred HHhCCCcHHHHHHHHHHhHH
Q 009663 363 ACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~ 382 (529)
.....|++++|...+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34455666666666666553
No 404
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.53 E-value=1.9e+02 Score=28.58 Aligned_cols=123 Identities=11% Similarity=-0.055 Sum_probs=70.0
Q ss_pred HHHHcCChhHHHHHHHHHhhcccCCC--CCCHH---HHHHHHHHHhCCCcHHHHHHHHHHhHHh------cCCCCChhHH
Q 009663 325 SFALHGQSENSICVFEEMMRCQDHNI--RPDGV---TFISLLNACTHGGLVEQGRAYFKLMTKT------YRIEPQIEHY 393 (529)
Q Consensus 325 ~~~~~~~~~~a~~~~~~m~~~~~~~~--~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~p~~~~~ 393 (529)
.+.-.|++.+|.+++...---+..|. .|... .++.+.-.+.+.|.+..+..+|.+..+. .|++|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~-- 326 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT-- 326 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc--
Confidence 34556888888887765421111232 22111 1244444445667777777777766531 02222100
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
..+.-...-.+.....-.+...|++-.|.++|.++......+|..|..++.+|...
T Consensus 327 --------------------~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 --------------------FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred --------------------eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 00000112222333445577889999999999999998777899999999988643
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.25 E-value=1.7e+02 Score=28.14 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=23.6
Q ss_pred HcCChhHHHHHHHHHhhcccCCCCCCHH--HHHHHHHHHh--CCCcHHHHHHHHHHhH
Q 009663 328 LHGQSENSICVFEEMMRCQDHNIRPDGV--TFISLLNACT--HGGLVEQGRAYFKLMT 381 (529)
Q Consensus 328 ~~~~~~~a~~~~~~m~~~~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~ 381 (529)
+.+++..|.++++.+.. . ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 143 n~~~y~aA~~~l~~l~~---r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 143 NRYDYGAAARILEELLR---R-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred hcCCHHHHHHHHHHHHH---h-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45556666666666554 3 333332 2233333332 2344555555555554
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.03 E-value=55 Score=25.53 Aligned_cols=43 Identities=5% Similarity=0.037 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHH
Q 009663 96 SAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHT 138 (529)
Q Consensus 96 ~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 138 (529)
.+.++|..|...|+..--+..|..-...+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555434444445555555555555555555554
No 407
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.00 E-value=74 Score=24.70 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=30.6
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 414 KGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 414 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
-.+.+-|++.+...-+.+|.+.+++..|+++|+-.+..-+
T Consensus 76 ~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 76 FDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred hccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 3346778888888888888888888888888887776444
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.94 E-value=25 Score=23.30 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 459 GIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
...++.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445566666677777776666654
No 409
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.23 E-value=27 Score=22.30 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 458 YGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 458 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
....++.++.+.|++++|.+..+.+.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 35567788999999999999999997653
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.96 E-value=23 Score=23.46 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
.-.+|.+|...|++++|.+++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444555555555555554444
No 411
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.75 E-value=24 Score=30.52 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=31.7
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 401 GRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.+.|+.+.|.+++.+. ...| ....|-.+...--+.|+++.|.+.|++.++++|.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3455555666666555 3333 3555666666666666666666666666666655
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=55.60 E-value=81 Score=30.42 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=29.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh--------cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIE--------IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
|++.++-.||+..|+++++.+.- .-+-..+++..++.+|.-.+++.+|++.|..+.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666555544321 112244555666666666666666666665553
No 413
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=55.56 E-value=2.1e+02 Score=27.93 Aligned_cols=233 Identities=10% Similarity=-0.006 Sum_probs=103.5
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 84 ITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 84 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
|+++... | ..++..+-..... .++...+.....++... +...+.+.+-.... .++..+...+..++...+
T Consensus 45 LdgL~~~-G--~~a~~~L~~aL~~---d~~~ev~~~aa~al~~~-~~~~~~~~L~~~L~---d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 45 VDGLVLA-G--KAATELLVSALAE---ADEPGRVACAALALLAQ-EDALDLRSVLAVLQ---AGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHh-h--HhHHHHHHHHHhh---CCChhHHHHHHHHHhcc-CChHHHHHHHHHhc---CCCHHHHHHHHHHHhcCC
Confidence 6666666 5 4566666666543 23333444333333322 22222222222222 334456666777777777
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc
Q 009663 164 NDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS 243 (529)
Q Consensus 164 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (529)
+......+...+..+++......+.++...+. +-...+..-+.++|...-..-+.++...+..+ +...+..+.
T Consensus 115 -~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~-a~~~L~~al---- 187 (410)
T TIGR02270 115 -GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRL-SESTLRLYL---- 187 (410)
T ss_pred -chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-chHHHHHHH----
Confidence 55555555555555555555455555544331 22222233334555555555555555555432 223333332
Q ss_pred CCCCCCHHHHHHHHHHhhccCCchHHHHHHHH-HHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHH
Q 009663 244 DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGY-VYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSM 322 (529)
Q Consensus 244 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 322 (529)
..+|...-..-+.++...|. ..|...+.. ..+.| ......+...+...|. +++...+..+.+... +-...
T Consensus 188 --~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g----~~~~~~l~~~lal~~~-~~a~~~L~~ll~d~~-vr~~a 258 (410)
T TIGR02270 188 --RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEG----GPHRQRLLVLLAVAGG-PDAQAWLRELLQAAA-TRREA 258 (410)
T ss_pred --cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccC----ccHHHHHHHHHHhCCc-hhHHHHHHHHhcChh-hHHHH
Confidence 23444444555555555555 444443333 22222 2222222222222222 244444443332221 33444
Q ss_pred HHHHHHcCChhHHHHHHHHH
Q 009663 323 INSFALHGQSENSICVFEEM 342 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m 342 (529)
+.++.+.|+...+.-+.+.|
T Consensus 259 ~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 259 LRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHHcCCcchHHHHHHHh
Confidence 55555555555444444444
No 414
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.74 E-value=82 Score=33.32 Aligned_cols=160 Identities=14% Similarity=0.044 Sum_probs=84.9
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcH
Q 009663 291 LIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLV 370 (529)
Q Consensus 291 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 370 (529)
+|..+.+.|..+-|+.+.+.-..+ .......|+.+.|++.-.+.- +..+|..|......+|+.
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR--------F~LaLe~gnle~ale~akkld---------d~d~w~rLge~Al~qgn~ 688 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR--------FELALECGNLEVALEAAKKLD---------DKDVWERLGEEALRQGNH 688 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh--------eeeehhcCCHHHHHHHHHhcC---------cHHHHHHHHHHHHHhcch
Confidence 444555556555555544321111 112234466666666655542 456677777777777777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 371 EQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 371 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
+-|+..|+... .|..|-..|.-.|+.++-.++.+-..++.|..+.. ..+ .-.|+.++-..+++..-.
T Consensus 689 ~IaEm~yQ~~k----------nfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~--qna-lYl~dv~ervkIl~n~g~ 755 (1202)
T KOG0292|consen 689 QIAEMCYQRTK----------NFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQF--QNA-LYLGDVKERVKILENGGQ 755 (1202)
T ss_pred HHHHHHHHHhh----------hhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHH--HHH-HHhccHHHHHHHHHhcCc
Confidence 77777776654 23344455666677766666555554444433321 111 124666666666654322
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 451 IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 451 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
. +-.|. .....|.-++|.++.++..++...
T Consensus 756 ~----~layl----ta~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 756 L----PLAYL----TAAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred c----cHHHH----HHhhcCcHHHHHHHHHhhccccCC
Confidence 1 11121 123457777788887777665443
No 415
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.41 E-value=2.6e+02 Score=28.67 Aligned_cols=243 Identities=12% Similarity=0.057 Sum_probs=130.8
Q ss_pred hhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHH-hhccCCchHHHHHHHHHHH-------hCCCCCccHHHHHHHHHHhC
Q 009663 228 FSDAISFFRRMGMEVSDNIRP-NQVTLVCALSA-IGHTGMLQLGKVIHGYVYR-------NGLDLDSFISNALIDMYGKC 298 (529)
Q Consensus 228 ~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 298 (529)
...|.++++...+. |..- -...-.....+ .....+.+.|..+++.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~---g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL---GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhh---cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 46788888877643 3221 11111122223 5567899999999998877 55 344566677778774
Q ss_pred C-----CHHHHHHHHhhcCCCC-hhHHHHHHHHHHH---cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHH--hCC
Q 009663 299 G-----SLKEARRAFDRNSKKR-LTSWNSMINSFAL---HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNAC--THG 367 (529)
Q Consensus 299 g-----~~~~A~~~~~~~~~~~-~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~--~~~ 367 (529)
. +.+.|..+|......+ ...-..+...+.. ..+...|.++|..... .|..+ ..-+..++... .-.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~---~G~~~-A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK---AGHIL-AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH---cCChH-HHHHHHHHHHhCCCcC
Confidence 3 6677999998755433 2233333333332 2467899999999876 66533 22222222211 134
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHH----HHH----cC
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM---KIEPDEVVWGSLLNG----CKI----YG 436 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~----~~~----~g 436 (529)
.+.+.|..++.+.... | .|....-...+..+.. ++++.+.-.+..+ +.+ ...+-...+.. ... ..
T Consensus 378 r~~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCHHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence 5788999999998866 5 3432333333344444 6666655544433 311 11111111110 111 12
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc---C-CHHHHHHHHHHHhhCC
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL---G-KWDEVRKVRKMLKDRN 486 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g-~~~~a~~~~~~~~~~~ 486 (529)
+...+...+.++...+ ++.....++.+|... + +.+.|...+.+...++
T Consensus 454 ~~~~~~~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred chhHHHHHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 4455555555554432 455566666655443 2 3666666666666555
No 416
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.41 E-value=40 Score=19.37 Aligned_cols=18 Identities=22% Similarity=0.017 Sum_probs=8.8
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 009663 427 SLLNGCKIYGRTDFAEFA 444 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~ 444 (529)
.+...+...|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444555555555555
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.35 E-value=1.8e+02 Score=26.93 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
.+.....-|++-|+.+.|++.+.
T Consensus 106 a~~~kaeYycqigDkena~~~~~ 128 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALR 128 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHH
Confidence 33344444444444444444443
No 418
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.15 E-value=2.2e+02 Score=27.81 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=29.2
Q ss_pred hHHHHHHHHHh---CCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc
Q 009663 214 AWNSVIAGCTQ---NGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH 262 (529)
Q Consensus 214 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~ 262 (529)
.+..++.++.+ .++.+.|+.++..|... |..|....-..+..++-.
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~---G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEA---GEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHh
Confidence 34455555554 47888888888888766 777775555444444433
No 419
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.93 E-value=92 Score=24.20 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 336 ICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 336 ~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
.+-+..... ..+.|+.......+++|.+.+++..|.++|+-+..+ ..+....|-.++ ++...++++
T Consensus 69 rkglN~l~~---yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~E 134 (149)
T KOG4077|consen 69 RKGLNNLFD---YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLNE 134 (149)
T ss_pred HHHHHhhhc---cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHHH
Confidence 334444444 677888888888899999999999999999888754 233333455544 344555666
Q ss_pred CCC
Q 009663 416 MKI 418 (529)
Q Consensus 416 ~~~ 418 (529)
+|+
T Consensus 135 LGI 137 (149)
T KOG4077|consen 135 LGI 137 (149)
T ss_pred hCC
Confidence 653
No 420
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.94 E-value=1.7e+02 Score=26.20 Aligned_cols=242 Identities=9% Similarity=0.066 Sum_probs=118.0
Q ss_pred CchHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcCCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHhcCC
Q 009663 129 ESRGTKMVHTQIVKSGFEQYP---VVETALVNSYSRSGNDIGIARKLFDEMSD---------RNVVSWTAMISGYTRVGD 196 (529)
Q Consensus 129 ~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~g~ 196 (529)
.+++|+.-|+..++...+... .....++....+.| ++++..+.+.++.. -+..+.|.++.......+
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~-~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG-NYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 455555555555443222111 22334455556666 66666666665542 133455566655555555
Q ss_pred HHHHHHHHhhCCC-----CCh----hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC-C-------HHHHHHHHHH
Q 009663 197 IKNAASLFDSMPD-----RDV----PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP-N-------QVTLVCALSA 259 (529)
Q Consensus 197 ~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~-------~~~~~~ll~~ 259 (529)
.+-...+++.-.+ .+. .|-..|...|...|.+.+..++++++.+++...--. | ...|..-+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5444444433211 111 133456667777777777777777765431111000 1 1245555666
Q ss_pred hhccCCchHHHHHHHHHHHhCC-CCCccHHHHHHH-----HHHhCCCHHHHHH-HHhhcC------CCCh---hHHHHHH
Q 009663 260 IGHTGMLQLGKVIHGYVYRNGL-DLDSFISNALID-----MYGKCGSLKEARR-AFDRNS------KKRL---TSWNSMI 323 (529)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~-----~~~~~g~~~~A~~-~~~~~~------~~~~---~~~~~li 323 (529)
|....+-..-..++++.+...- -|.+.... .|. ...+.|++++|-. +|+... .|.. .-|..+.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 6666676777777777654322 23333333 233 2345677776643 222221 1211 1344555
Q ss_pred HHHHHcCC--hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 324 NSFALHGQ--SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 324 ~~~~~~~~--~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
..+.+.|- ++. +++. +..-.|.....+.++.+|-. ++..+-++++..-.
T Consensus 280 NMLmkS~iNPFDs-----QEAK---PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~ 330 (440)
T KOG1464|consen 280 NMLMKSGINPFDS-----QEAK---PYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNR 330 (440)
T ss_pred HHHHHcCCCCCcc-----cccC---CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhh
Confidence 55554431 110 0111 13344556667778877754 56666566655543
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.71 E-value=30 Score=33.55 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=75.8
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHH-HHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFIS-LLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLL 400 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 400 (529)
+..+...+.++.|..++.++ -.+.||...|-. -..++.+.+++..|..=+..+.+. .|+ ...|-.-..++
T Consensus 11 an~~l~~~~fd~avdlysKa-----I~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKA-----IELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAV 82 (476)
T ss_pred HhhhcccchHHHHHHHHHHH-----HhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHH
Confidence 45667788999999999998 678887665543 347888999999998887777743 564 44555555566
Q ss_pred HhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 009663 401 GRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKI 434 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 434 (529)
.+.+++.+|+..|+.. .+.|+..-....+.-|-.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 6777788888888877 678887777766665543
No 422
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=52.68 E-value=29 Score=31.52 Aligned_cols=80 Identities=6% Similarity=-0.007 Sum_probs=55.7
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 385 RIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGS-LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 385 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
.+..|+..|...+.-..+.|.+.+.-.+|.+. ...| |+..|-. -..-+...++++.+..+|.+.++++|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 33446677776666666667777777777776 4455 4555533 1223567889999999999999999999998876
Q ss_pred HHH
Q 009663 462 LAN 464 (529)
Q Consensus 462 l~~ 464 (529)
..+
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 544
No 423
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.68 E-value=99 Score=23.35 Aligned_cols=27 Identities=11% Similarity=0.372 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhh
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGM 240 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 240 (529)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888889999999999888864
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.92 E-value=74 Score=24.03 Aligned_cols=25 Identities=4% Similarity=0.365 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHh
Q 009663 319 WNSMINSFALHGQSENSICVFEEMM 343 (529)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~m~ 343 (529)
|..++..|...|..++|++++.+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 4555555555666666666665554
No 425
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.77 E-value=1.1e+02 Score=23.78 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=27.8
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 441 AEFAVKKLIE--IDPNNGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 441 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
..++|..+.+ ++-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666665 444456677777777788888888887774
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.50 E-value=85 Score=27.99 Aligned_cols=56 Identities=13% Similarity=-0.067 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPN------NGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.+..-|.+.|++++|.++|+.+...-.. ...+...+..++.+.|+.++.+.+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444566666666666666666442111 2334445556666667777666654444
No 427
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.86 E-value=2.8e+02 Score=28.05 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=41.2
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC--CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcC-----CCCchhHHHHHHHHH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEP--DEVVWGSLLNGC-KIYGRTDFAEFAVKKLIEID-----PNNGGYGIMLANIYG 467 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~ 467 (529)
+..+.+.|-+.-|.++.+.+ .+.| |+.....+|+.| .+..++.--+++++.....+ | +-.+-..++..|.
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~P-N~~yS~AlA~f~l 427 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLP-NFGYSLALARFFL 427 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcC-CchHHHHHHHHHH
Confidence 33455667777777766665 4444 355555555553 34556666666666664422 4 4455555666555
Q ss_pred hcCC
Q 009663 468 ELGK 471 (529)
Q Consensus 468 ~~g~ 471 (529)
+...
T Consensus 428 ~~~~ 431 (665)
T KOG2422|consen 428 RKNE 431 (665)
T ss_pred hcCC
Confidence 5444
No 428
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.42 E-value=28 Score=31.51 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=37.8
Q ss_pred hCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 009663 365 THGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP 420 (529)
Q Consensus 365 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 420 (529)
.+.|+.++|..+|+.+. .+.|+ +.....+.......+++-+|-+++-+. .+.|
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 46799999999999987 45674 666555555555566777777777665 5566
No 429
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.95 E-value=58 Score=24.75 Aligned_cols=46 Identities=11% Similarity=0.072 Sum_probs=38.7
Q ss_pred HHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 14 QQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
..++.+|......-.+.+|++.+.+.+...+..|.-..|..+...|
T Consensus 4 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 4 LAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 4566677766777889999999999988888888888999999998
No 430
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=49.90 E-value=77 Score=28.44 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=43.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++.+.++++.|....++...++|+++.-..--+-+|.+.|...-|+.-+....+.-
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 456777888888888888888888887777777777888888888887777655543
No 431
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.56 E-value=2.4e+02 Score=26.92 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHH-HHh------CCCcH
Q 009663 298 CGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLN-ACT------HGGLV 370 (529)
Q Consensus 298 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~-~~~------~~~~~ 370 (529)
.++.+.-..++. ...-.+.++..+...+.+.|+...|.+++++..- +|..... .+. ..|..
T Consensus 23 ~~Dp~~l~~ll~-~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf-----------~~e~~~~~~F~~~~~~~~~g~~ 90 (360)
T PF04910_consen 23 SHDPNALINLLQ-KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF-----------AFERAFHPSFSPFRSNLTSGNC 90 (360)
T ss_pred ccCHHHHHHHHH-HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHHHHHHHhhhhhcccccCcc
Confidence 345554444441 1122445666677777778888777777777642 1211111 110 00100
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHH---HHHHHhcCChHHHHHHHHhC-CCCC--CHHHHHHHHHHH-HHcCCHHHHHH
Q 009663 371 EQGRAYFKLMTKTYRIEPQIEHYGCL---VDLLGRAGRFEEALEVVKGM-KIEP--DEVVWGSLLNGC-KIYGRTDFAEF 443 (529)
Q Consensus 371 ~~a~~~~~~~~~~~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~g~~~~A~~ 443 (529)
+-.+...-|...|.++ +..+.+.|-+..|+++.+-+ .+.| |+.....+|+.| .+.++++--++
T Consensus 91 ----------rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~ 160 (360)
T PF04910_consen 91 ----------RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLID 160 (360)
T ss_pred ----------ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHH
Confidence 0011112244555444 56678899999999998887 5555 555556666664 56788888888
Q ss_pred HHHHHHhcCC-----CCchhHHHHHHHHHhcCCH---------------HHHHHHHHHHh
Q 009663 444 AVKKLIEIDP-----NNGGYGIMLANIYGELGKW---------------DEVRKVRKMLK 483 (529)
Q Consensus 444 ~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~---------------~~a~~~~~~~~ 483 (529)
+++....... .-|.....++-++...++. ++|...+.+..
T Consensus 161 ~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 161 FSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred HHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHH
Confidence 8887655211 1234444555556666666 67777666553
No 432
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.56 E-value=1.4e+02 Score=24.05 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHCCC----CCCCcchHHHHHHhCccCCC-chHHHHHHHHHHHhCCCCchhHH
Q 009663 78 YLYTAMITAYASQPAHASSAFSLYRDMVRRGQ----PQPNQFIYPHVLKSCPDVLE-SRGTKMVHTQIVKSGFEQYPVVE 152 (529)
Q Consensus 78 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~ 152 (529)
...|.++.-+... +++...+.+++.+..... ...+..+|.+++++.++... --.+..+|..+.+.+.+++..-|
T Consensus 40 ~fiN~iL~hl~~~-~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy 118 (145)
T PF13762_consen 40 IFINCILNHLASY-QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHHc-cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4577888888877 889988888888743210 03567789999999977766 45577888999888889999999
Q ss_pred HHHHHHHHhcC
Q 009663 153 TALVNSYSRSG 163 (529)
Q Consensus 153 ~~l~~~~~~~g 163 (529)
..++.++.+-.
T Consensus 119 ~~li~~~l~g~ 129 (145)
T PF13762_consen 119 SCLIKAALRGY 129 (145)
T ss_pred HHHHHHHHcCC
Confidence 99999887654
No 433
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.53 E-value=1.6e+02 Score=26.67 Aligned_cols=106 Identities=7% Similarity=-0.093 Sum_probs=62.1
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 009663 377 FKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-------KIEPDEVVWGS-LLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 377 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 448 (529)
+++..+..|-.-....+..+...|++.++.+.+.++..+. |.+.|.....+ +.-.|....-.++-++..+.+
T Consensus 102 i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~ 181 (412)
T COG5187 102 IREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDI 181 (412)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3333333333344678888999999999999999888764 44444433222 222244444467777777777
Q ss_pred HhcCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 449 IEIDPN-----NGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 449 ~~~~p~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
.+.+-+ ...+|..+ .+....++.+|..++-....
T Consensus 182 iEkGgDWeRrNRyK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 182 IEKGGDWERRNRYKVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHhCCCHHhhhhHHHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 776643 22233332 23344567777777665543
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.11 E-value=1.9e+02 Score=25.60 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHh-hccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 009663 218 VIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAI-GHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYG 296 (529)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (529)
+++.+-+.|+++++...++++... +...+..--+.+-.+| ...|....+.+++..+.+..-.-.......++.-|.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~---~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEM---NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHT---SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Q ss_pred h------CCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh-----------------hHHHHHHHHHhhcccCCCCCC
Q 009663 297 K------CGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQS-----------------ENSICVFEEMMRCQDHNIRPD 353 (529)
Q Consensus 297 ~------~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-----------------~~a~~~~~~m~~~~~~~~~p~ 353 (529)
+ ..--.+.+.+++...-|....-.+.+-.+-..|++ +.|.+.|+++.......++|.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Q ss_pred HHHHHHHHHHHh-----CCCcHHHHHHHHHHhHHh
Q 009663 354 GVTFISLLNACT-----HGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 354 ~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~ 383 (529)
..++..++--++ ..|+.++|.++-+.....
T Consensus 164 ~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.91 E-value=67 Score=28.65 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=9.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 009663 396 LVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~ 416 (529)
+...|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444443
No 436
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.81 E-value=59 Score=23.21 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=15.1
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhcC
Q 009663 165 DIGIARKLFDEMSDRNVVSWTAMISGYTRVG 195 (529)
Q Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 195 (529)
+.+.+.++++.++.....+|..+..++...|
T Consensus 45 r~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 45 RRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4444555555554444445555444444444
No 437
>PRK12798 chemotaxis protein; Reviewed
Probab=48.70 E-value=2.6e+02 Score=27.04 Aligned_cols=85 Identities=12% Similarity=-0.039 Sum_probs=48.8
Q ss_pred HhhcCCChhHHHHHhhcCCCCChh-HHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHh-CccCCCchH
Q 009663 55 CTLKLSNLTYARFIFDHLTTPNTY-LYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKS-CPDVLESRG 132 (529)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 132 (529)
|.-+||++.....++..-..++.. ....-+..|. . |+..++...+..+..... ++....|..|+.+ .....+...
T Consensus 90 y~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~-~-Gr~~~a~~~La~i~~~~l-~~~lg~~laLv~a~l~~~~dP~~ 166 (421)
T PRK12798 90 YLLSGGNPATLRKLLARDKLGNFDQRLADGALAYL-S-GRGREARKLLAGVAPEYL-PAELGAYLALVQGNLMVATDPAT 166 (421)
T ss_pred hHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHH-c-CCHHHHHHHhhcCChhhc-CchhhhHHHHHHHHHhcccCHHH
Confidence 444455777777776665533322 1111222332 3 777777777777766655 6666666666665 344556777
Q ss_pred HHHHHHHHHH
Q 009663 133 TKMVHTQIVK 142 (529)
Q Consensus 133 a~~~~~~~~~ 142 (529)
|..+|++..=
T Consensus 167 Al~~lD~aRL 176 (421)
T PRK12798 167 ALKLLDQARL 176 (421)
T ss_pred HHHHHHHHHH
Confidence 7777776643
No 438
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.10 E-value=1.9e+02 Score=25.41 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=48.7
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----C-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 385 RIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM----K-----------IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 385 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
++.-+......++ +...|+..+|+..++.- + ..|.+.....++..|. .+++++|.+.+.++.
T Consensus 189 kv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw 265 (333)
T KOG0991|consen 189 KVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELW 265 (333)
T ss_pred CCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 4444444444443 34556666666555433 1 2677777777777765 467888888888888
Q ss_pred hcCCCCchhHHHHHHHHH
Q 009663 450 EIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 450 ~~~p~~~~~~~~l~~~~~ 467 (529)
+++-+.......+.++..
T Consensus 266 ~lgysp~Dii~~~FRv~K 283 (333)
T KOG0991|consen 266 KLGYSPEDIITTLFRVVK 283 (333)
T ss_pred HcCCCHHHHHHHHHHHHH
Confidence 877644455555555443
No 439
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.52 E-value=1.2e+02 Score=22.83 Aligned_cols=14 Identities=0% Similarity=0.086 Sum_probs=6.7
Q ss_pred chHHHHHHHHHHHh
Q 009663 130 SRGTKMVHTQIVKS 143 (529)
Q Consensus 130 ~~~a~~~~~~~~~~ 143 (529)
.++|..+.+.+...
T Consensus 22 H~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 22 HQEANTIADWLEQE 35 (116)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 44455555544443
No 440
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=47.23 E-value=1.2e+02 Score=22.59 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=32.8
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHh
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMM 343 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 343 (529)
+..+.+.|+|++|..+.+....||+..|.++-. .+.|-.+++..-+.++.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345667777888887777777777777766544 35566565665555554
No 441
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=47.23 E-value=1.1e+02 Score=22.19 Aligned_cols=53 Identities=21% Similarity=0.132 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCHH
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN--NGGYGIMLANIYGELGKWD 473 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 473 (529)
|...-..+...+...|++++|++.+-.+++.+++ +...-..++.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4566666777777788888888877777776544 3556666666666666643
No 442
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.92 E-value=64 Score=24.79 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 12 LNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
....++.++......-.+++|++.+.+.+...+..|.-.-|..+...|
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 345677778888788999999999999998889888888889999988
No 443
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.96 E-value=1.4e+02 Score=28.77 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 184 WTAMISGYTRVGDIKNAASLFDSMPD-----------RDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 184 ~~~ll~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
...+++..+-.||+..|+++++.+.- -.+.+|..+.-+|...+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888777642 244567778888888889999988888765
No 444
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.89 E-value=23 Score=32.61 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=70.3
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAG 404 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 404 (529)
....|.++.|++.|...++ --+|....|.--.+++.+.+++..|++-+.... .+.|| ...|-.--.+-...|
T Consensus 124 Aln~G~~~~ai~~~t~ai~----lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE----LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HhcCcchhhhhcccccccc----cCCchhhhcccccceeeeccCCchhhhhhhhhh---ccCcccccccchhhHHHHHhh
Confidence 4456778888888877753 233455566666677778888888887777766 44564 333433334445567
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 405 RFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 405 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
+|++|...|... .+.-|..+-..+=...-+.+..++-...+++..+
T Consensus 197 ~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred chHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 888887777766 3333433333343444445555555555555544
No 445
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.97 E-value=4.7e+02 Score=28.93 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCC--CHHHHHHHHhhcCCC
Q 009663 288 SNALIDMYGKCG--SLKEARRAFDRNSKK 314 (529)
Q Consensus 288 ~~~l~~~~~~~g--~~~~A~~~~~~~~~~ 314 (529)
...++.+|.+.+ +++.|+....++.+.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344555666655 566666665555443
No 446
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.77 E-value=3.4e+02 Score=27.91 Aligned_cols=85 Identities=13% Similarity=0.019 Sum_probs=54.1
Q ss_pred HhcCChHHHHHHHHhC-CCCC-C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 401 GRAGRFEEALEVVKGM-KIEP-D------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~-~~~p-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
.+..++..+.++|..- ..-| | ......+.-+|....+.+.|.++++++.+.+|.++-.-..+..+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 3455666666666542 2111 1 223455555667777777888888888777777776666666677777777
Q ss_pred HHHHHHHHHHhhC
Q 009663 473 DEVRKVRKMLKDR 485 (529)
Q Consensus 473 ~~a~~~~~~~~~~ 485 (529)
++|+..+......
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 7777776666543
No 447
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.56 E-value=25 Score=36.74 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=37.3
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 009663 399 LLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEI 451 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 451 (529)
.+..+|+++.|++.-...+ |..+|..|+....+.|+.+-|+.+|++....
T Consensus 652 LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 3456788888887777665 5677888888888888888888888777653
No 448
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.06 E-value=28 Score=27.22 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=22.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHh
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKS 123 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~ 123 (529)
|.-..|..+|..|+++|. +|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~-pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGN-PPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCC-CCc--cHHHHHHH
Confidence 677789999999999997 676 45666654
No 449
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.72 E-value=2.2e+02 Score=26.46 Aligned_cols=66 Identities=18% Similarity=0.044 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCC-Cc-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 422 EVVWGSLLNGCKIYGRTDFAEFAVKKLIE----IDPN-NG-GYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 422 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
...+......|++-|+-+.|.+.+++..+ .+.. |. .....++-.|....-..+-++..+.+.++|-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 44566667778999999999988877765 2221 11 1222344444444445555555555555553
No 450
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.54 E-value=2.4e+02 Score=27.50 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=26.6
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 417 KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 417 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
++.|. ..++..-+..+.+.+++..|-.+.+++++++|.
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 55554 335566677788999999999999999999984
No 451
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=43.36 E-value=1.6e+02 Score=22.98 Aligned_cols=58 Identities=16% Similarity=0.035 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWG-SLLNGCKIYGRTDFAEFAVKK 447 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 447 (529)
..+..++..++.-.|..++|.++++..+..++-...| -+++.|....+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455566666777777777777777775545444333 456667777666666555444
No 452
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.97 E-value=90 Score=26.15 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=10.2
Q ss_pred HHHhcCChHHHHHHHHhC
Q 009663 399 LLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~ 416 (529)
.|.+.|.+++|.+++++.
T Consensus 120 VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 120 VCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHhcCchHHHHHHHHHH
Confidence 455555555555555555
No 453
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.97 E-value=49 Score=20.50 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=17.7
Q ss_pred ccCCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 009663 125 PDVLESRGTKMVHTQIVKSGFEQYPVVETALV 156 (529)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 156 (529)
.+.|-..++..+++.|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34445555666666666666655555555444
No 454
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.82 E-value=1.5e+02 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=13.3
Q ss_pred HHHHHHhcCCCHHHHHHHHhhCCC
Q 009663 155 LVNSYSRSGNDIGIARKLFDEMSD 178 (529)
Q Consensus 155 l~~~~~~~g~~~~~A~~~~~~~~~ 178 (529)
.+..|.+.| .+++|.+++++...
T Consensus 117 aV~VCm~~g-~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENG-EFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcC-chHHHHHHHHHHhc
Confidence 334566666 66666666665543
No 455
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.64 E-value=4.3e+02 Score=27.83 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhCCCCCc---cHHHHHHHHHHhCCCHHHHHHHHhhcCC-CCh---h-------HHHHHHHHHHHcCChh
Q 009663 268 LGKVIHGYVYRNGLDLDS---FISNALIDMYGKCGSLKEARRAFDRNSK-KRL---T-------SWNSMINSFALHGQSE 333 (529)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~-------~~~~li~~~~~~~~~~ 333 (529)
+-..++.+|...--.|+. .+...++-.|....+++...++.+.+.. ||. + .|.-.++---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 334455556554333332 2344455566666777777776665442 111 1 2222222223456777
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHH-------HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFIS-------LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGR- 405 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~- 405 (529)
+|+.+.-.+.+ .+..+.||..+... +-+.|...+..+.|..+|++.- .+.|+...--.+...+...|.
T Consensus 261 kAL~~~l~lve-~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 261 KALNTVLPLVE-KEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHH-hcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhh
Confidence 78777766665 22346676544221 1123445566777888887765 556654332222222223332
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 406 FEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 406 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
++..+++ +.+| .. |-..+.+.|..+.-.++|+-+.- ..+-.-++++.+|++.-++|.+.
T Consensus 337 Fens~El-q~Ig-----mk---Ln~LlgrKG~leklq~YWdV~~y------------~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 337 FENSLEL-QQIG-----MK---LNSLLGRKGALEKLQEYWDVATY------------FEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred ccchHHH-HHHH-----HH---HHHHhhccchHHHHHHHHhHHHh------------hhhhhhccCHHHHHHHHHHHhcc
Confidence 2222111 1111 11 22234566776666666653321 12334557888888888888665
Q ss_pred C
Q 009663 486 N 486 (529)
Q Consensus 486 ~ 486 (529)
.
T Consensus 396 k 396 (1226)
T KOG4279|consen 396 K 396 (1226)
T ss_pred C
Confidence 3
No 456
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.18 E-value=1.4e+02 Score=22.05 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=22.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
|.-.|.+.|+.+.|.+-|+.=..+.|.+..+...|
T Consensus 78 LGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 44456677777777777777777777655555444
No 457
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.03 E-value=2.8e+02 Score=25.55 Aligned_cols=81 Identities=10% Similarity=0.075 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHh----------cCCHHHHHHH
Q 009663 134 KMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTR----------VGDIKNAASL 203 (529)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~----------~g~~~~A~~~ 203 (529)
.++++.+...++.|.-..+.-+.-.+.+.= .+.....+++.+...... |..++..||. .|++....++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF-~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmkL 340 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEF-PLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMKL 340 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccC-CchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 356666777777777777666666666666 777777777777642211 5555555543 5677777777
Q ss_pred HhhCCCCChhhHH
Q 009663 204 FDSMPDRDVPAWN 216 (529)
Q Consensus 204 ~~~~~~~~~~~~~ 216 (529)
++.-+.-|+...-
T Consensus 341 LQ~yp~tdi~~~l 353 (370)
T KOG4567|consen 341 LQNYPTTDISKML 353 (370)
T ss_pred HhcCCCCCHHHHH
Confidence 7666655554433
No 458
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=41.55 E-value=2.9e+02 Score=26.72 Aligned_cols=22 Identities=23% Similarity=0.052 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHh
Q 009663 394 GCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
..|..+|.+.++.+-|+.-..+
T Consensus 232 tklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhh
Confidence 4466678888888777655443
No 459
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.00 E-value=3.2e+02 Score=25.88 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=13.3
Q ss_pred HhcCCCHHHHHHHHhhCCC
Q 009663 160 SRSGNDIGIARKLFDEMSD 178 (529)
Q Consensus 160 ~~~g~~~~~A~~~~~~~~~ 178 (529)
...+ +++.|+-+|+....
T Consensus 194 iglk-~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 194 IGLK-RFERALYLLEICVT 211 (422)
T ss_pred eccc-cHHHHHHHHHHHHh
Confidence 3445 88888888887765
No 460
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.80 E-value=3.5e+02 Score=26.27 Aligned_cols=188 Identities=12% Similarity=0.055 Sum_probs=94.9
Q ss_pred HHHHHHHHhCCCCchhH--HHHHHHHHhhcCCChhHHHHHhhcCCCCChh---HHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009663 31 QLQSFLTTLGQSQTNFY--AFKLVRFCTLKLSNLTYARFIFDHLTTPNTY---LYTAMITAYASQPAHASSAFSLYRDMV 105 (529)
Q Consensus 31 ~i~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~a~~~~~~m~ 105 (529)
.+.+.+.+.|..|+... ..+.+...++.| +.+-+.-+++.-..++.. ..+. +...+.. |+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~~~t~-L~~A~~~-g~~~~v~~Ll~--- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFR-DSEAIKLLMKHGAIPDVKYPDIESE-LHDAVEE-GDVKAVEELLD--- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCccccCCCcccH-HHHHHHC-CCHHHHHHHHH---
Confidence 45566667787766432 344556666777 888777777654433221 2233 3334456 77766544443
Q ss_pred HCCCCCC---CcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCCHHHHHHHHhhCCCC-
Q 009663 106 RRGQPQP---NQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVV--ETALVNSYSRSGNDIGIARKLFDEMSDR- 179 (529)
Q Consensus 106 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~~A~~~~~~~~~~- 179 (529)
.|.... +..-. +.+...+..|+. ++++.+.+.|..|+... ..+.+...+..| +.+.+..+++.-..+
T Consensus 90 -~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~-~~~~v~~Ll~~g~~~~ 162 (413)
T PHA02875 90 -LGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG-DIKGIELLIDHKACLD 162 (413)
T ss_pred -cCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhcCCCCC
Confidence 332011 11111 222223344544 45555666776554321 223445556777 787777777655432
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---hHHHHHHHHHhCCChhHHH
Q 009663 180 --NVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVP---AWNSVIAGCTQNGLFSDAI 232 (529)
Q Consensus 180 --~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~ 232 (529)
|..-++. +...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+-+.
T Consensus 163 ~~d~~g~Tp-L~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~ 219 (413)
T PHA02875 163 IEDCCGCTP-LIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVR 219 (413)
T ss_pred CCCCCCCCH-HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHH
Confidence 2222233 33345567777776666654444322 1223444445566655443
No 461
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.51 E-value=1.5e+02 Score=23.83 Aligned_cols=61 Identities=8% Similarity=-0.003 Sum_probs=37.1
Q ss_pred HHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 101 YRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 101 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
.+.+.+.|. +++. .-..++..+...++.-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 9 ~~~lk~~gl-r~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGL-RLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCC-CcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455554 3332 234555666666666777888888877776666666555666666666
No 462
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.41 E-value=2.8e+02 Score=25.01 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
++.....+...|.+.|++.+|..-|-.-. .|+...+..++..+...|...++--++ ...+--|.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~dlfi--------------~RaVL~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEADLFI--------------ARAVLQYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--HHHHH--------------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcchhHHH--------------HHHHHHHHH
Confidence 57778888888999999888887775443 233333322333333334433331111 122234566
Q ss_pred cCCHHHHHHHHHHHhhC
Q 009663 469 LGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 469 ~g~~~~a~~~~~~~~~~ 485 (529)
.|+...|...++...++
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 78888888887777655
No 463
>PRK09857 putative transposase; Provisional
Probab=40.00 E-value=2.7e+02 Score=25.63 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYK 489 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 489 (529)
+..++......++.++-.++++...+..|........++.-+.+.|.-++++++.++|...|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34455555566777777777777776666666667778888888888888899999998888754
No 464
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.75 E-value=92 Score=19.28 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=27.8
Q ss_pred HccCcchHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009663 22 RCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRF 54 (529)
Q Consensus 22 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~ 54 (529)
+.|-..+++.+.+.|.+.|+..++.++..++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 456777888999999999999999999888764
No 465
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.20 E-value=62 Score=29.50 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFIS 359 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ 359 (529)
-|+..|....+.||+++|+.++++..+ .|..--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~---LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAER---LGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCchHHHHHHH
Confidence 455667777777777777777777766 665554444443
No 466
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.66 E-value=1.3e+02 Score=28.02 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=33.2
Q ss_pred HHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 009663 325 SFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRA 403 (529)
Q Consensus 325 ~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 403 (529)
-|.+..++..|...|.+-...+-.....+.+.|+.-..+-...|++..|+.-..... .+.|+ ...|-.=..++...
T Consensus 90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al---~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL---KLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---hcCcchhhhhhhhhHHHHHH
Confidence 344444444444444444331001111123334433333333444444444433333 23342 33333333334444
Q ss_pred CChHHHHHHHH
Q 009663 404 GRFEEALEVVK 414 (529)
Q Consensus 404 g~~~~A~~~~~ 414 (529)
.++++|..+.+
T Consensus 167 e~~~~a~nw~e 177 (390)
T KOG0551|consen 167 ERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 467
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.64 E-value=2.7e+02 Score=24.42 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=8.6
Q ss_pred HHHhCCCcHHHHHHHHHHh
Q 009663 362 NACTHGGLVEQGRAYFKLM 380 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~ 380 (529)
.++...|+...|..+++..
T Consensus 116 ~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 116 QALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHCCChhHHHHHHHhc
Confidence 3333344555555444443
No 468
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.48 E-value=2.8e+02 Score=24.49 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 348 HNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRI-----------EPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 348 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.++.-+..-...++ +...|+..+|...++.-...+|. .|.+.....++..| ..+++++|.+++.++
T Consensus 188 Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~l 264 (333)
T KOG0991|consen 188 EKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAEL 264 (333)
T ss_pred hCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence 45554444444444 45678888888877776544333 46666666666544 567889999998887
Q ss_pred ---CCCCCHHHHHHHHHH
Q 009663 417 ---KIEPDEVVWGSLLNG 431 (529)
Q Consensus 417 ---~~~p~~~~~~~l~~~ 431 (529)
|+.|.. ..+.+...
T Consensus 265 w~lgysp~D-ii~~~FRv 281 (333)
T KOG0991|consen 265 WKLGYSPED-IITTLFRV 281 (333)
T ss_pred HHcCCCHHH-HHHHHHHH
Confidence 655533 23334444
No 469
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=38.01 E-value=3.5e+02 Score=25.45 Aligned_cols=87 Identities=9% Similarity=0.078 Sum_probs=46.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHH-HHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC
Q 009663 290 ALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENS-ICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG 368 (529)
Q Consensus 290 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~ 368 (529)
.+.+.+++.++.+.+..+-+.+..-......++..++....-.+.. ..+.+.+.. . ||......++++.+...
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~---~---~d~~~~~a~lRAls~~~ 244 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQ---A---PDLELLSALLRALSSAP 244 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHc---C---CCHHHHHHHHHHHcCCC
Confidence 3556666666665555555444444444455555555444433333 334444432 2 77777777777777665
Q ss_pred cHHHHHHHHHHhHH
Q 009663 369 LVEQGRAYFKLMTK 382 (529)
Q Consensus 369 ~~~~a~~~~~~~~~ 382 (529)
........++.+..
T Consensus 245 ~~~~~~~~i~~~L~ 258 (340)
T PF12069_consen 245 ASDLVAILIDALLQ 258 (340)
T ss_pred chhHHHHHHHHHhc
Confidence 55555554555554
No 470
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=37.15 E-value=3.4e+02 Score=25.13 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhcCCHHHHHHHH
Q 009663 130 SRGTKMVHTQIVKSGF----EQYPVVETALVNSYSRSGNDIGIARKLFDEMSD-RNVVSWTAMISGYTRVGDIKNAASLF 204 (529)
Q Consensus 130 ~~~a~~~~~~~~~~g~----~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~ 204 (529)
.+.|.+.+......+. ..++.....++....+.| +.+.-..+++.... ++......++.+++...+.+...+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g-~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNG-DEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHh-hHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 4555666666655311 334455555666666666 55554444444443 34444555666665555555555555
Q ss_pred hhCC
Q 009663 205 DSMP 208 (529)
Q Consensus 205 ~~~~ 208 (529)
+...
T Consensus 225 ~~~l 228 (324)
T PF11838_consen 225 DLLL 228 (324)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5443
No 471
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.98 E-value=3.9e+02 Score=25.75 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCCChh--HHHHHHHHHH--hcCChHHHHHHHHhC
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQIE--HYGCLVDLLG--RAGRFEEALEVVKGM 416 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~ 416 (529)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ...++++|.+.++..
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3445789999999999999864 455443 5666666665 456788999999887
No 472
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.80 E-value=33 Score=26.90 Aligned_cols=34 Identities=9% Similarity=-0.008 Sum_probs=26.4
Q ss_pred HHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009663 19 ILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRF 54 (529)
Q Consensus 19 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~ 54 (529)
.++..|+..++-+||..|.+.|-+||. ++.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 356678888999999999999988875 4455544
No 473
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.16 E-value=65 Score=29.36 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHCCC
Q 009663 78 YLYTAMITAYASQPAHASSAFSLYRDMVRRGQ 109 (529)
Q Consensus 78 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~ 109 (529)
.-||..|..-.+. ||.++|+.++++..+.|.
T Consensus 258 ~Yy~~aI~~AVk~-gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 258 SYFNQAIKQAVKK-GDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC
Confidence 3466777777777 888888888888888775
No 474
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.86 E-value=1.3e+02 Score=24.22 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=26.9
Q ss_pred HHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 14 QQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
..++.+|...+..-.|+.|++.+.+.+.+.+..|--.-|..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444455544444666666666666666665555555566666666
No 475
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.73 E-value=4.8e+02 Score=26.37 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhh
Q 009663 216 NSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 216 ~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
..++.-|.+.++.++|+.++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 345556666666666666666663
No 476
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.50 E-value=1e+02 Score=22.33 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=12.8
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 009663 165 DIGIARKLFDEMSDRNVVSWTAMISGYT 192 (529)
Q Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 192 (529)
+.+.+.++++.++...+.+|..+..++.
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 3444444444444444444444444443
No 477
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.44 E-value=4.2e+02 Score=25.64 Aligned_cols=50 Identities=8% Similarity=-0.120 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHhh---ccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 009663 246 IRPNQVTLVCALSAIG---HTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY 295 (529)
Q Consensus 246 ~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (529)
...+...+.-+++++. +-.+++.|+-++.+|++.|-.|.-..-..++-++
T Consensus 242 ~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~As 294 (436)
T COG2256 242 FDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIAS 294 (436)
T ss_pred cCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3444444555555553 3456777777777777777655444333333333
No 478
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=34.74 E-value=4.7e+02 Score=26.08 Aligned_cols=147 Identities=9% Similarity=0.055 Sum_probs=88.3
Q ss_pred cHHHHHHHHHHcc----C-cchH-HHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHH
Q 009663 12 LNQQVLAILERCN----H-INHL-KQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMIT 85 (529)
Q Consensus 12 ~~~~~~~~l~~~~----~-~~~~-~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 85 (529)
....-..++..|- . .... ...|..+.....++|....-..+..+.+.|++++. |+.-..|....|-.-+-
T Consensus 45 ~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~----~~~~i~~~L~~wl~~~~ 120 (464)
T PF11864_consen 45 ARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDIDF----FEYEIGPFLLSWLEPSY 120 (464)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchh----cccchHHHHHHHHHHHH
Confidence 4445555555552 2 2223 35666676666777778888888899999966633 22222333333332111
Q ss_pred -------HHh----------------cCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHh----CccC---CCchHHHH
Q 009663 86 -------AYA----------------SQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKS----CPDV---LESRGTKM 135 (529)
Q Consensus 86 -------~~~----------------~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~----~~~~---~~~~~a~~ 135 (529)
... .. +.....++++..+.+.+...++......++.. |.+. .+.+....
T Consensus 121 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~ 199 (464)
T PF11864_consen 121 QAARSARRKAKKSSSSKSKGLSNLDNEE-SNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLS 199 (464)
T ss_pred HHHHHHHHHhhccccccccccccccchh-hhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 111 12 45667888888888877656776666666653 3332 45678889
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 136 VHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 136 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
+++.++..|.-|+......+...|.-.+
T Consensus 200 vldaii~y~~iP~~sl~~~i~vLCsi~~ 227 (464)
T PF11864_consen 200 VLDAIITYGDIPSESLSPCIEVLCSIVN 227 (464)
T ss_pred HHHHHHHcCcCChHHHHHHHHHHhhHhc
Confidence 9999999998887666555544444434
No 479
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=34.35 E-value=1.3e+02 Score=23.32 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcC
Q 009663 11 TLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQ 90 (529)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 90 (529)
+....++..+...+ +..+..|++.+.+. ......|-.+||+.+.+.| ++........+-|..++..--..
T Consensus 6 ~aE~eVM~ilW~~~-~~t~~eI~~~l~~~-~ews~sTV~TLl~RL~KKg--------~l~~~kdgr~~~y~pL~~~~~~~ 75 (123)
T COG3682 6 AAEWEVMEILWSRG-PATVREIIEELPAD-REWSYSTVKTLLNRLVKKG--------LLTRKKDGRAFRYSPLLTRDQYV 75 (123)
T ss_pred HHHHHHHHHHHHcC-CccHHHHHHHHhhc-ccccHHHHHHHHHHHHhcc--------chhhhhcCCeeeeecccCHHHHH
Confidence 44566778888877 67788999988876 7788889999999999998 55555555555565555433211
Q ss_pred CCChHHHHHHHHHHHHCC
Q 009663 91 PAHASSAFSLYRDMVRRG 108 (529)
Q Consensus 91 ~~~~~~a~~~~~~m~~~~ 108 (529)
...+..+++.....+
T Consensus 76 ---~~~~~~~l~k~~d~~ 90 (123)
T COG3682 76 ---AGESQDLLDKICDGG 90 (123)
T ss_pred ---HHHHHHHHHHHHccc
Confidence 334555555555544
No 480
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.87 E-value=5.1e+02 Score=26.16 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCC
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSKK 314 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 314 (529)
..++.-|.+.+++++|..++..|.-.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~ 437 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWN 437 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCcc
Confidence 34666788888888888888777643
No 481
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.84 E-value=3.3e+02 Score=23.88 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC---CHHHHH--HHHHHHhCCCcHHHHHHHHHHhH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP---DGVTFI--SLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p---~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
-.+.|+--|.-...+.+|.+.|..- .|+.| +..++. .-|......|+.+.|+.....+.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~e-----~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAKE-----SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhccc-----cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 4455554444444444455554433 33333 222222 23444455566666666555543
No 482
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=33.66 E-value=3e+02 Score=23.42 Aligned_cols=54 Identities=20% Similarity=0.136 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-----------CC----CchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEID-----------PN----NGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----------p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
+++..|.+..++.++.++++.+.++. |. .-.+.+..+..+.+.|..|-|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 45556777777888888888877632 22 22345566778899999999999886
No 483
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.60 E-value=3.9e+02 Score=24.74 Aligned_cols=111 Identities=15% Similarity=-0.026 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 370 VEQGRAYFKLMTKTYRI---EPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 370 ~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
.+.|.+.|+.......- ..++.....+.....+.|..+.-..+++.....++...-..++.++....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 46777888887753111 335566666777777888876666666666546678888889999888889988889999
Q ss_pred HHHhcC-CCCchhHHHHHHHHHhcCC--HHHHHHHHHH
Q 009663 447 KLIEID-PNNGGYGIMLANIYGELGK--WDEVRKVRKM 481 (529)
Q Consensus 447 ~~~~~~-p~~~~~~~~l~~~~~~~g~--~~~a~~~~~~ 481 (529)
.+...+ .........+. .+...+. .+.+..+++.
T Consensus 226 ~~l~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLA-GLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHCTSTS-TTTHHHHHH-HHH-CSTTCHHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHH-HHhcCChhhHHHHHHHHHH
Confidence 888843 22333443333 3332333 3666666443
No 484
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.46 E-value=1.2e+02 Score=25.14 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 26 INHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 26 ~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
.-.+++|++.+.+.+...+..|--..|..+...|
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344444444444444444444444444444444
No 485
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.35 E-value=4.7e+02 Score=25.56 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=18.8
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLL 400 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 400 (529)
..+.+.|..++..|.+. |..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~-G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEA-GEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 46777777777777754 6555533333333333
No 486
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.23 E-value=3.8e+02 Score=30.20 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM--------KIE-P-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEI-----D- 452 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 452 (529)
....|..|...+.+.|+.++|..+-... +.. | +...|..+.-.+...++...|...+.++..+ +
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 4667777777777888888877776554 222 2 2344555555556666777777777766651 2
Q ss_pred --CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 453 --PNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 453 --p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
|........+...+...++++.|+++++.+.+
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 32333444454445555777778777777765
No 487
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=32.51 E-value=2.4e+02 Score=22.02 Aligned_cols=111 Identities=12% Similarity=0.097 Sum_probs=62.0
Q ss_pred ChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHh----Ccc-------CCC
Q 009663 61 NLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKS----CPD-------VLE 129 (529)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~----~~~-------~~~ 129 (529)
++.-|..++......+ .+...++.+... .-.-.++++..++..... .|... .+..+.. |-. .+.
T Consensus 4 Np~IA~~~l~~l~~s~--~~~~yld~lv~~-~~sl~s~EvVn~L~~~~~-~p~ef-l~~yI~~cI~~ce~~kd~~~q~R~ 78 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP--NFKEYLDVLVSM-DMSLHSMEVVNRLTTSFS-LPQEF-LHMYISNCIKSCESIKDKYMQNRL 78 (126)
T ss_pred cHHHHHHHHHHHcCCc--hHHHHHHHHHcC-CCchhHHHHHHHHHcCCC-CcHHH-HHHHHHHHHHHHHhhcccccccch
Confidence 4455555555544322 255556666665 666667777777766553 33332 2222222 221 122
Q ss_pred chHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009663 130 SRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMS 177 (529)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~ 177 (529)
..-.-.+++.+++.++......+..+-..|.+-. ++.+|..+|+-+.
T Consensus 79 VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs-~i~Ea~~L~kllk 125 (126)
T PF10155_consen 79 VRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFS-RIKEASALFKLLK 125 (126)
T ss_pred hhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHc-cHHHHHHHHHHHh
Confidence 2223345666677776655666777777777777 7888888877553
No 488
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.43 E-value=4.5e+02 Score=25.54 Aligned_cols=192 Identities=11% Similarity=-0.002 Sum_probs=88.4
Q ss_pred HHHHHHhhhcccCCCCCCHHH--HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHhCCCHHHHHHH
Q 009663 232 ISFFRRMGMEVSDNIRPNQVT--LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSF--ISNALIDMYGKCGSLKEARRA 307 (529)
Q Consensus 232 ~~~~~~m~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 307 (529)
.++++.+.+. |..|+... ..+.+..++..|+.+- .+.+.+.|..|+.. .....+...+..|+.+.+..+
T Consensus 15 ~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~L 87 (413)
T PHA02875 15 LDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEEL 87 (413)
T ss_pred HHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHH
Confidence 5667777655 77766432 2233444455666553 34444556544322 112345566677888887777
Q ss_pred HhhcCCCC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH---HHHHHHHHHhCCCcHHHHHHHHHHh
Q 009663 308 FDRNSKKR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV---TFISLLNACTHGGLVEQGRAYFKLM 380 (529)
Q Consensus 308 ~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~ 380 (529)
++.-...+ .... +.+...+..|+.+-+. .+.+ .|..|+.. -.+. +...+..|+.+-+..+++.
T Consensus 88 l~~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv~----~Ll~---~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~Ll~~- 157 (413)
T PHA02875 88 LDLGKFADDVFYKDGM-TPLHLATILKKLDIMK----LLIA---RGADPDIPNTDKFSP-LHLAVMMGDIKGIELLIDH- 157 (413)
T ss_pred HHcCCcccccccCCCC-CHHHHHHHhCCHHHHH----HHHh---CCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhc-
Confidence 76543221 1112 2333344556654333 3333 55554432 1223 3334455666555444432
Q ss_pred HHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHH
Q 009663 381 TKTYRIEPQ---IEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVV---WGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 381 ~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
|..++ ....+.| ...+..|+.+-+.-+++ .|..++... ..+.+...+..|+.+-+.-+++
T Consensus 158 ----g~~~~~~d~~g~TpL-~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 158 ----KACLDIEDCCGCTPL-IIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred ----CCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 33332 2222222 23445566655544444 333333211 1233443445666654444443
No 489
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=31.23 E-value=1e+02 Score=17.27 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
.++.|..+|++.+...| ++..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 35667777777777666 455554443
No 490
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=30.80 E-value=4.1e+02 Score=24.15 Aligned_cols=115 Identities=11% Similarity=-0.175 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-------ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG-------RFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGR 437 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 437 (529)
+..+|..+|+++.+. |..+.......+...|...+ +...|..++.++-..-+......+...|.. ..+
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666543 33322112223333333221 123566666665112233444444433322 236
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC---------------CHHHHHHHHHHHhhCCC
Q 009663 438 TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG---------------KWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~ 487 (529)
..+|...|.++-+.+. ......+. .+...| +...|...+......+.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 7777777777777665 44444444 444444 66677777777766655
No 491
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.67 E-value=1.5e+02 Score=27.22 Aligned_cols=70 Identities=13% Similarity=-0.037 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 418 IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM-LANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 418 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
...|+..|...+....+.|.+.+.-.++.++....|.|...|.. ...-+...++++.++.++.+-...+.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 44578888888888888889999999999999999999888876 44456677899999988866555443
No 492
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=30.54 E-value=54 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=18.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcc
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQF 115 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~ 115 (529)
-|++.|+..|.++...|.++|+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 688999999999988775466543
No 493
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=29.75 E-value=5.3e+02 Score=25.03 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHh---CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 009663 351 RPDGVTFISLLNACT---HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG 404 (529)
Q Consensus 351 ~p~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 404 (529)
..+...+.-+++++- +..+++.|.-++-+|.+. |-.|....-..++-++..-|
T Consensus 243 Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~-GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 243 DKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEA-GEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcc
Confidence 334444455555553 456777888888888765 65555444444444444444
No 494
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=29.69 E-value=2.5e+02 Score=21.32 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 009663 440 FAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVR 479 (529)
Q Consensus 440 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (529)
.+.+.+.+...+.|+.......++.-+...-.|+++..-.
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ka 101 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKA 101 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3566777777777766555555554433333444444443
No 495
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=29.69 E-value=8.2e+02 Score=27.78 Aligned_cols=153 Identities=12% Similarity=0.025 Sum_probs=92.8
Q ss_pred HHHHcCChhHHHH------HHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHH----hcCCCC--ChhH
Q 009663 325 SFALHGQSENSIC------VFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTK----TYRIEP--QIEH 392 (529)
Q Consensus 325 ~~~~~~~~~~a~~------~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p--~~~~ 392 (529)
.....|.+.++.+ ++..... .--++....|..+...+-+.|+.++|..+-....- ..|..+ +...
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~---~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMG---VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhh---hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 3444566665655 5553321 11233456788888888899999998876554321 113333 3455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC---------CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC---
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM---------KIEPDEVV-WGSLLNGCKIYGRTDFAEFAVKKLIEI-----DPN--- 454 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~--- 454 (529)
|..+...+...+....|+..+.+. +..|.... +..+-..+...++++.|+++.+.+... .|.
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~ 1097 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELE 1097 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchh
Confidence 666666666666777777666554 23454443 344444455568899999999988873 232
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 455 NGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
....+..+++.+...|++..|....+
T Consensus 1098 ~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1098 TALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 44566677777777777776665543
No 496
>PRK02287 hypothetical protein; Provisional
Probab=29.53 E-value=3.3e+02 Score=22.62 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWG-SLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
.+..+++.++.-.|..++|.++++..+..++-...| .+++.|.+..+.++..++-++..
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 345556666666677777777766664434333332 45666666666666655554443
No 497
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.51 E-value=3.6e+02 Score=27.88 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=24.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcH
Q 009663 321 SMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLV 370 (529)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 370 (529)
++..+|...|++-.+.++++.... ...|-+.-...|+..++.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~-~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID-HNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCcCCeeehhHHHHHHHHHHhcCCc
Confidence 555556666666666555555543 1122222233455555555555543
No 498
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.46 E-value=1.8e+02 Score=24.06 Aligned_cols=35 Identities=6% Similarity=-0.031 Sum_probs=15.6
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 129 ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 129 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
+.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33444445555544444444444333444444444
No 499
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.92 E-value=2.2e+02 Score=20.43 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=25.9
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 375 AYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 375 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
++|+..... |+..|+.+|..+++...-.=-.+...++++.|
T Consensus 29 EL~ELa~~A-Gv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLA-GVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHh-CCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 555555544 77777777777776665555566666666665
No 500
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.72 E-value=8.3e+02 Score=26.99 Aligned_cols=257 Identities=11% Similarity=0.024 Sum_probs=147.6
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC
Q 009663 169 ARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP 248 (529)
Q Consensus 169 A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p 248 (529)
...+...+.++|+.+-..-+..+.+.+..+....+...+.+++...-...+.++.+.+........+..+.. .+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~------~~ 696 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG------SP 696 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc------CC
Confidence 345556666788888777888888877765555566666667766655666665554332222233333331 25
Q ss_pred CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 009663 249 NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFAL 328 (529)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 328 (529)
|...-...+.++...+..+ ...+.. ..+ .++..+-...+.++.+.+..+. +......++...-...+.++..
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHH
Confidence 5555555666665443221 122222 222 3455555556666666555432 3334455666666667777777
Q ss_pred cCChhH-HHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 009663 329 HGQSEN-SICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 329 ~~~~~~-a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 407 (529)
.+..+. +...+..+.. .++...-...+.++...|..+.+...+..+.+ .++..+-...+.++.+.+..+
T Consensus 769 ~~~~~~~~~~~L~~ll~------D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~~ 838 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG------DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAADV 838 (897)
T ss_pred hccccchhHHHHHHHhc------CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccccc
Confidence 766543 3445555432 35666677778888888876555444444443 345556666777777777644
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 408 EALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 408 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
+...+-.+-..|+..+=...+.++.+.+....+...+..+.+
T Consensus 839 -a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 839 -AVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred -hHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 444444442267777766777777665444567777777666
Done!