Query 009663
Match_columns 529
No_of_seqs 568 out of 3149
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 10:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.3E-38 8E-43 323.7 35.4 427 43-486 82-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.6E-37 1.6E-41 314.1 37.1 437 15-467 89-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-27 5.1E-32 230.0 38.5 370 86-471 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-26 5.1E-31 223.0 34.8 349 121-485 6-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 2E-27 6.7E-32 232.9 22.6 184 213-403 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 7.9E-27 2.7E-31 228.7 21.4 199 230-435 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.7E-24 9.3E-29 215.2 32.5 427 47-487 8-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-23 4E-28 210.6 30.9 433 13-462 9-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 4.8E-23 1.6E-27 207.4 33.4 420 45-487 25-493 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 2.5E-22 8.5E-27 197.4 32.3 319 148-481 25-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 2.2E-22 7.4E-27 197.8 30.3 356 63-455 9-414 (450)
12 3fp2_A TPR repeat-containing p 99.9 4.6E-21 1.6E-25 192.9 30.5 429 13-461 28-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.5E-19 8.5E-24 170.1 30.6 303 151-468 5-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 5.9E-19 2E-23 167.5 30.6 296 180-486 2-336 (359)
15 3hym_B Cell division cycle pro 99.8 5E-18 1.7E-22 159.1 28.2 281 184-473 25-322 (330)
16 3hym_B Cell division cycle pro 99.8 4.3E-18 1.5E-22 159.6 27.5 265 210-486 20-300 (330)
17 2xm6_A Protein corresponding t 99.8 1.1E-16 3.6E-21 158.8 37.3 365 76-468 38-452 (490)
18 1fch_A Peroxisomal targeting s 99.8 1.8E-18 6.2E-23 164.9 23.5 259 213-482 65-356 (368)
19 2ooe_A Cleavage stimulation fa 99.8 1.4E-16 5E-21 159.5 35.8 412 42-487 10-494 (530)
20 2xm6_A Protein corresponding t 99.8 3.1E-16 1.1E-20 155.5 37.6 364 95-487 24-434 (490)
21 1xi4_A Clathrin heavy chain; a 99.8 8.5E-16 2.9E-20 159.9 41.4 381 43-479 983-1378(1630)
22 3mkr_A Coatomer subunit epsilo 99.8 6.8E-17 2.3E-21 147.9 29.8 271 189-479 7-288 (291)
23 1b89_A Protein (clathrin heavy 99.8 7.7E-18 2.6E-22 157.4 22.8 287 57-416 15-308 (449)
24 1xi4_A Clathrin heavy chain; a 99.8 4.3E-15 1.5E-19 154.7 44.1 421 4-480 979-1440(1630)
25 2ooe_A Cleavage stimulation fa 99.8 1.4E-15 4.7E-20 152.4 38.6 400 22-454 24-495 (530)
26 4eqf_A PEX5-related protein; a 99.8 1.2E-17 4.1E-22 159.1 21.8 260 212-481 65-352 (365)
27 1b89_A Protein (clathrin heavy 99.8 2.3E-17 7.8E-22 154.2 21.7 381 13-443 6-409 (449)
28 4g1t_A Interferon-induced prot 99.8 2.7E-16 9.3E-21 155.3 29.9 279 196-496 153-470 (472)
29 1fch_A Peroxisomal targeting s 99.8 3.2E-17 1.1E-21 156.3 21.3 279 195-486 15-315 (368)
30 3cv0_A Peroxisome targeting si 99.8 3.6E-17 1.2E-21 153.0 20.6 258 214-483 23-313 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 1.9E-16 6.6E-21 144.9 23.6 248 219-487 6-266 (291)
32 4eqf_A PEX5-related protein; a 99.7 1.9E-16 6.4E-21 150.8 21.5 232 249-486 64-311 (365)
33 4g1t_A Interferon-induced prot 99.7 2.4E-15 8.1E-20 148.5 24.3 380 44-463 50-471 (472)
34 3uq3_A Heat shock protein STI1 99.7 2.6E-15 8.9E-20 135.1 20.5 218 252-486 7-237 (258)
35 3cv0_A Peroxisome targeting si 99.7 1.8E-15 6.3E-20 141.4 20.1 148 297-450 150-314 (327)
36 2pl2_A Hypothetical conserved 99.7 3.5E-15 1.2E-19 130.4 19.3 194 282-483 2-212 (217)
37 3uq3_A Heat shock protein STI1 99.7 3.8E-15 1.3E-19 134.0 19.2 236 213-465 6-256 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.6 4.9E-16 1.7E-20 156.9 12.3 117 317-434 128-248 (1134)
39 3spa_A Mtrpol, DNA-directed RN 99.6 1.9E-16 6.6E-21 159.8 7.5 123 182-307 128-258 (1134)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.9E-15 3E-19 133.1 17.4 244 224-479 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.6 3.4E-14 1.2E-18 129.0 21.1 244 214-470 5-269 (272)
42 3e4b_A ALGK; tetratricopeptide 99.6 6.9E-14 2.4E-18 136.5 21.5 376 83-485 9-421 (452)
43 2ho1_A Type 4 fimbrial biogene 99.6 1.2E-12 4.2E-17 117.2 25.2 201 253-460 40-247 (252)
44 2h6f_A Protein farnesyltransfe 99.6 3.4E-13 1.2E-17 127.5 22.3 244 212-469 97-366 (382)
45 1ouv_A Conserved hypothetical 99.6 1.4E-12 4.7E-17 118.5 25.0 217 256-487 12-253 (273)
46 4a1s_A PINS, partner of inscut 99.6 2.9E-14 1E-18 137.9 14.2 266 215-485 51-372 (411)
47 3u4t_A TPR repeat-containing p 99.6 3.5E-13 1.2E-17 122.2 20.5 228 252-487 5-252 (272)
48 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-13 3.9E-18 123.1 16.9 194 286-485 24-222 (243)
49 2vq2_A PILW, putative fimbrial 99.6 6.7E-13 2.3E-17 116.4 21.6 194 287-485 10-211 (225)
50 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-13 4.2E-18 122.9 17.0 211 251-468 24-239 (243)
51 2ho1_A Type 4 fimbrial biogene 99.6 4.4E-13 1.5E-17 120.1 20.4 198 285-487 37-240 (252)
52 3sf4_A G-protein-signaling mod 99.5 1.9E-13 6.3E-18 131.9 19.1 271 183-453 11-338 (406)
53 1ouv_A Conserved hypothetical 99.5 2E-12 7E-17 117.3 24.7 225 211-455 5-255 (273)
54 2vq2_A PILW, putative fimbrial 99.5 3E-12 1E-16 112.2 24.1 206 250-462 8-222 (225)
55 2h6f_A Protein farnesyltransfe 99.5 2.6E-13 9E-18 128.3 18.2 227 250-486 97-349 (382)
56 3e4b_A ALGK; tetratricopeptide 99.5 4.2E-13 1.4E-17 130.9 20.1 348 119-488 8-390 (452)
57 3ro2_A PINS homolog, G-protein 99.5 5.9E-14 2E-18 131.4 13.5 267 215-486 8-333 (338)
58 2pl2_A Hypothetical conserved 99.5 4.5E-13 1.5E-17 116.9 17.9 191 211-415 4-210 (217)
59 3sf4_A G-protein-signaling mod 99.5 6E-13 2E-17 128.3 19.9 279 113-416 8-333 (406)
60 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.5E-13 1.9E-17 121.1 17.8 237 194-445 18-269 (275)
61 3vtx_A MAMA; tetratricopeptide 99.5 2.3E-12 8E-17 109.2 20.6 165 315-487 4-172 (184)
62 4abn_A Tetratricopeptide repea 99.5 1.9E-13 6.4E-18 134.3 15.3 191 284-482 101-318 (474)
63 4e6h_A MRNA 3'-END-processing 99.5 3E-10 1E-14 114.6 37.9 416 31-460 53-579 (679)
64 4e6h_A MRNA 3'-END-processing 99.5 7.3E-11 2.5E-15 119.1 29.6 213 304-527 328-569 (679)
65 4a1s_A PINS, partner of inscut 99.4 9E-13 3.1E-17 127.4 14.8 202 252-453 128-374 (411)
66 3ulq_A Response regulator aspa 99.4 1.8E-12 6E-17 124.1 16.2 226 258-484 111-367 (383)
67 3nf1_A KLC 1, kinesin light ch 99.4 4E-13 1.4E-17 124.4 10.3 241 213-484 28-306 (311)
68 3ro2_A PINS homolog, G-protein 99.4 2.4E-12 8.4E-17 120.3 15.8 240 214-453 45-334 (338)
69 3vtx_A MAMA; tetratricopeptide 99.4 7.7E-12 2.6E-16 106.0 17.2 166 284-456 4-175 (184)
70 3as5_A MAMA; tetratricopeptide 99.4 1.7E-11 5.7E-16 103.7 18.1 164 318-487 10-175 (186)
71 2ond_A Cleavage stimulation fa 99.4 1.8E-10 6.2E-15 106.3 26.4 217 229-456 33-275 (308)
72 1hz4_A MALT regulatory protein 99.4 2.9E-10 1E-14 108.2 28.0 265 218-485 20-322 (373)
73 4gyw_A UDP-N-acetylglucosamine 99.4 5.8E-12 2E-16 128.7 16.5 161 316-484 9-173 (723)
74 3ulq_A Response regulator aspa 99.4 1.6E-11 5.4E-16 117.4 17.8 234 218-452 109-369 (383)
75 2ond_A Cleavage stimulation fa 99.4 6.7E-11 2.3E-15 109.3 20.7 213 267-488 33-273 (308)
76 3q15_A PSP28, response regulat 99.3 3.8E-10 1.3E-14 107.6 25.1 232 217-450 106-364 (378)
77 4abn_A Tetratricopeptide repea 99.3 2E-11 6.7E-16 119.9 16.1 210 92-311 82-318 (474)
78 3nf1_A KLC 1, kinesin light ch 99.3 6.5E-12 2.2E-16 116.2 11.1 243 181-454 27-310 (311)
79 4i17_A Hypothetical protein; T 99.3 8E-11 2.7E-15 103.5 16.9 186 286-486 8-210 (228)
80 4i17_A Hypothetical protein; T 99.3 1.2E-10 4.1E-15 102.3 18.0 205 247-466 4-224 (228)
81 3as5_A MAMA; tetratricopeptide 99.3 2.2E-10 7.6E-15 96.7 17.8 168 286-459 9-181 (186)
82 1hz4_A MALT regulatory protein 99.3 8.3E-10 2.8E-14 105.0 23.2 238 214-453 55-324 (373)
83 3q15_A PSP28, response regulat 99.3 1.4E-10 4.9E-15 110.5 17.1 228 256-484 107-364 (378)
84 1qqe_A Vesicular transport pro 99.2 2.4E-10 8.2E-15 104.6 16.2 205 265-484 32-268 (292)
85 3edt_B KLC 2, kinesin light ch 99.2 2.1E-10 7.1E-15 104.2 15.1 225 261-485 12-281 (283)
86 3mv2_B Coatomer subunit epsilo 99.2 3.1E-09 1.1E-13 95.3 21.4 242 190-459 22-290 (310)
87 3qky_A Outer membrane assembly 99.2 1.9E-09 6.5E-14 96.8 18.7 182 285-487 15-226 (261)
88 4ga2_A E3 SUMO-protein ligase 99.1 7.8E-11 2.7E-15 95.8 7.6 140 324-471 5-149 (150)
89 3mv2_B Coatomer subunit epsilo 99.1 4.2E-09 1.4E-13 94.4 19.3 241 219-487 20-284 (310)
90 4gyw_A UDP-N-acetylglucosamine 99.1 4.6E-10 1.6E-14 114.7 13.7 161 285-453 9-176 (723)
91 2fo7_A Synthetic consensus TPR 99.1 2.6E-09 8.9E-14 84.6 15.4 128 357-486 4-133 (136)
92 2yhc_A BAMD, UPF0169 lipoprote 99.1 8.2E-09 2.8E-13 90.3 19.8 185 286-490 5-218 (225)
93 3qky_A Outer membrane assembly 99.1 3E-09 1E-13 95.5 16.6 204 247-474 12-250 (261)
94 1qqe_A Vesicular transport pro 99.1 1.9E-09 6.4E-14 98.6 15.4 204 259-462 46-280 (292)
95 4ga2_A E3 SUMO-protein ligase 99.1 5E-10 1.7E-14 91.0 9.2 123 360-485 3-129 (150)
96 3edt_B KLC 2, kinesin light ch 99.1 2.4E-09 8.3E-14 97.1 14.7 229 223-451 12-281 (283)
97 2pzi_A Probable serine/threoni 99.1 7.3E-10 2.5E-14 113.8 12.2 167 296-471 402-583 (681)
98 3gyz_A Chaperone protein IPGC; 99.0 1.4E-09 4.7E-14 87.9 10.9 103 385-487 30-135 (151)
99 3qou_A Protein YBBN; thioredox 99.0 5.9E-09 2E-13 94.9 16.2 175 301-483 102-282 (287)
100 2ifu_A Gamma-SNAP; membrane fu 99.0 1.3E-08 4.4E-13 93.7 18.0 222 225-478 4-254 (307)
101 2fo7_A Synthetic consensus TPR 99.0 1.3E-08 4.5E-13 80.4 15.2 131 318-454 3-135 (136)
102 2vsy_A XCC0866; transferase, g 99.0 5.7E-09 1.9E-13 105.2 15.6 158 298-463 2-169 (568)
103 2r5s_A Uncharacterized protein 99.0 2.8E-09 9.7E-14 89.2 11.0 76 409-484 93-172 (176)
104 3rjv_A Putative SEL1 repeat pr 99.0 4.3E-08 1.5E-12 84.7 18.7 161 315-487 17-199 (212)
105 3urz_A Uncharacterized protein 98.9 2.2E-08 7.4E-13 86.4 15.2 126 320-454 58-189 (208)
106 2ifu_A Gamma-SNAP; membrane fu 98.9 6.1E-09 2.1E-13 95.9 12.2 200 262-483 3-222 (307)
107 4gco_A Protein STI-1; structur 98.9 7.9E-09 2.7E-13 80.9 10.6 92 392-483 15-108 (126)
108 2vsy_A XCC0866; transferase, g 98.9 5.8E-08 2E-12 97.8 19.4 145 264-416 3-154 (568)
109 4gco_A Protein STI-1; structur 98.9 2.3E-08 8E-13 78.2 12.6 113 350-465 8-124 (126)
110 2vgx_A Chaperone SYCD; alterna 98.9 7.2E-09 2.4E-13 83.8 9.9 102 385-486 15-119 (148)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.9 4.7E-08 1.6E-12 84.5 15.6 129 318-455 8-154 (213)
112 3u3w_A Transcriptional activat 98.9 3.5E-07 1.2E-11 83.5 21.7 163 320-484 79-265 (293)
113 3dra_A Protein farnesyltransfe 98.9 3.4E-07 1.2E-11 83.0 20.4 223 227-462 48-299 (306)
114 2pzi_A Probable serine/threoni 98.8 1.1E-07 3.6E-12 97.7 18.6 187 261-457 402-608 (681)
115 3urz_A Uncharacterized protein 98.8 6.1E-08 2.1E-12 83.5 14.3 162 84-255 11-195 (208)
116 1a17_A Serine/threonine protei 98.8 1.2E-07 3.9E-12 78.2 14.9 127 355-484 14-145 (166)
117 2qfc_A PLCR protein; TPR, HTH, 98.8 1.5E-07 5.3E-12 85.8 17.0 164 318-484 77-265 (293)
118 2r5s_A Uncharacterized protein 98.8 5.7E-08 2E-12 81.2 12.9 156 287-450 8-172 (176)
119 3qou_A Protein YBBN; thioredox 98.8 7.8E-08 2.7E-12 87.4 14.7 134 352-488 115-251 (287)
120 2uy1_A Cleavage stimulation fa 98.8 1.3E-05 4.4E-10 78.5 31.0 372 26-450 11-412 (493)
121 2xcb_A PCRH, regulatory protei 98.8 4.5E-08 1.5E-12 78.5 11.0 102 385-486 12-116 (142)
122 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.6E-07 5.4E-12 82.0 15.4 184 250-457 4-219 (225)
123 2uy1_A Cleavage stimulation fa 98.8 1.7E-07 5.8E-12 91.9 17.0 353 92-484 28-412 (493)
124 3rjv_A Putative SEL1 repeat pr 98.8 3.2E-07 1.1E-11 79.1 16.9 173 268-453 4-199 (212)
125 2e2e_A Formate-dependent nitri 98.8 6.8E-08 2.3E-12 80.8 12.0 120 366-487 22-146 (177)
126 3dra_A Protein farnesyltransfe 98.8 8.7E-06 3E-10 73.7 26.2 213 264-484 47-286 (306)
127 2lni_A Stress-induced-phosphop 98.8 1.4E-07 4.9E-12 74.2 13.0 116 353-471 15-133 (133)
128 1na0_A Designed protein CTPR3; 98.8 2.6E-07 8.9E-12 71.7 14.3 115 354-470 9-125 (125)
129 4f3v_A ESX-1 secretion system 98.7 1.5E-07 5.1E-12 83.3 13.5 125 360-487 108-239 (282)
130 1p5q_A FKBP52, FK506-binding p 98.7 9E-08 3.1E-12 89.1 12.8 94 390-483 196-292 (336)
131 2vyi_A SGTA protein; chaperone 98.7 2.2E-07 7.5E-12 72.8 13.3 118 353-472 11-130 (131)
132 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.3E-07 1.8E-11 77.8 16.6 130 288-421 9-153 (213)
133 2c2l_A CHIP, carboxy terminus 98.7 7.2E-08 2.5E-12 87.3 11.3 189 286-485 5-199 (281)
134 1hxi_A PEX5, peroxisome target 98.7 6.7E-08 2.3E-12 74.9 9.3 96 392-487 19-116 (121)
135 3upv_A Heat shock protein STI1 98.7 1.9E-07 6.4E-12 73.0 11.4 96 391-486 5-102 (126)
136 2kck_A TPR repeat; tetratricop 98.7 1.7E-07 5.9E-12 71.2 10.7 100 389-488 5-109 (112)
137 2qfc_A PLCR protein; TPR, HTH, 98.7 1.1E-06 3.7E-11 80.2 17.8 165 287-451 77-266 (293)
138 3gyz_A Chaperone protein IPGC; 98.7 2E-07 6.8E-12 75.2 11.3 104 350-456 31-138 (151)
139 4f3v_A ESX-1 secretion system 98.7 6.6E-07 2.3E-11 79.1 15.1 137 319-463 105-248 (282)
140 2vgx_A Chaperone SYCD; alterna 98.6 1.4E-07 4.6E-12 76.2 9.8 110 349-461 15-128 (148)
141 3sz7_A HSC70 cochaperone (SGT) 98.6 2.1E-07 7.4E-12 76.6 11.0 109 353-464 10-121 (164)
142 3q49_B STIP1 homology and U bo 98.6 5.7E-07 2E-11 71.3 12.6 98 389-486 8-107 (137)
143 4gcn_A Protein STI-1; structur 98.6 1.8E-07 6.3E-12 73.2 8.9 93 392-484 10-111 (127)
144 1elw_A TPR1-domain of HOP; HOP 98.6 7.9E-07 2.7E-11 68.1 12.3 104 356-462 6-112 (118)
145 2lni_A Stress-induced-phosphop 98.6 6E-07 2.1E-11 70.6 11.8 98 389-486 15-114 (133)
146 2xcb_A PCRH, regulatory protei 98.6 3.8E-07 1.3E-11 73.0 10.6 112 350-464 13-128 (142)
147 3gw4_A Uncharacterized protein 98.6 8.3E-07 2.8E-11 75.8 13.4 92 392-483 68-174 (203)
148 3upv_A Heat shock protein STI1 98.6 6.6E-07 2.2E-11 69.8 11.7 110 355-467 5-123 (126)
149 2dba_A Smooth muscle cell asso 98.6 1.8E-06 6E-11 69.3 14.6 112 353-467 27-144 (148)
150 1elw_A TPR1-domain of HOP; HOP 98.6 1.8E-06 6E-11 66.1 13.8 98 390-487 4-103 (118)
151 3u3w_A Transcriptional activat 98.6 1.7E-06 5.9E-11 78.8 15.8 206 41-278 42-265 (293)
152 2fbn_A 70 kDa peptidylprolyl i 98.6 7.5E-07 2.6E-11 75.9 12.5 97 391-487 89-188 (198)
153 2dba_A Smooth muscle cell asso 98.6 1.1E-06 3.9E-11 70.5 12.9 98 389-486 27-129 (148)
154 1na0_A Designed protein CTPR3; 98.5 1.1E-06 3.8E-11 68.0 12.2 97 390-486 9-107 (125)
155 2hr2_A Hypothetical protein; a 98.5 5.4E-07 1.8E-11 71.9 9.9 91 395-485 16-131 (159)
156 3gw4_A Uncharacterized protein 98.5 8.2E-07 2.8E-11 75.8 11.9 155 297-451 4-176 (203)
157 3sz7_A HSC70 cochaperone (SGT) 98.5 1.3E-06 4.3E-11 71.9 12.5 96 390-485 11-108 (164)
158 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4.2E-11 73.0 12.6 128 327-460 21-153 (177)
159 3q7a_A Farnesyltransferase alp 98.5 1.3E-05 4.6E-10 73.3 19.7 32 453-484 299-330 (349)
160 2vyi_A SGTA protein; chaperone 98.5 1.9E-06 6.4E-11 67.3 11.7 98 389-486 11-110 (131)
161 2xev_A YBGF; tetratricopeptide 98.4 1E-06 3.4E-11 69.0 9.6 95 361-458 9-112 (129)
162 3q7a_A Farnesyltransferase alp 98.4 0.0002 7E-09 65.5 26.0 232 220-464 62-345 (349)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.1E-06 7E-11 83.6 13.3 97 390-486 317-416 (457)
164 1wao_1 Serine/threonine protei 98.4 1.4E-06 4.7E-11 85.2 12.0 112 327-446 17-134 (477)
165 3q49_B STIP1 homology and U bo 98.4 3.2E-06 1.1E-10 66.8 11.9 112 352-466 7-126 (137)
166 4gcn_A Protein STI-1; structur 98.4 1.2E-06 4E-11 68.5 9.0 104 355-462 9-122 (127)
167 1a17_A Serine/threonine protei 98.4 5.2E-06 1.8E-10 68.1 13.5 127 318-450 15-145 (166)
168 1wao_1 Serine/threonine protei 98.4 1E-06 3.4E-11 86.2 9.9 117 361-480 13-134 (477)
169 3k9i_A BH0479 protein; putativ 98.4 4E-07 1.4E-11 70.0 5.7 90 367-457 3-96 (117)
170 2xev_A YBGF; tetratricopeptide 98.4 6.5E-06 2.2E-10 64.2 12.9 93 394-486 6-106 (129)
171 1elr_A TPR2A-domain of HOP; HO 98.4 2.4E-06 8.1E-11 66.8 10.0 97 390-486 4-109 (131)
172 3rkv_A Putative peptidylprolyl 98.4 1.6E-06 5.6E-11 71.0 9.2 103 354-456 11-131 (162)
173 1ihg_A Cyclophilin 40; ppiase 98.3 4E-06 1.4E-10 78.9 12.8 90 389-478 272-363 (370)
174 2if4_A ATFKBP42; FKBP-like, al 98.3 1.1E-06 3.7E-11 81.8 8.7 148 318-488 181-331 (338)
175 1hxi_A PEX5, peroxisome target 98.3 2.4E-06 8.4E-11 66.0 9.3 97 357-456 20-119 (121)
176 1elr_A TPR2A-domain of HOP; HO 98.3 2.9E-06 9.9E-11 66.2 9.6 111 355-468 5-124 (131)
177 2kck_A TPR repeat; tetratricop 98.3 4.4E-06 1.5E-10 63.1 10.1 100 355-456 7-111 (112)
178 2c2l_A CHIP, carboxy terminus 98.3 4.1E-06 1.4E-10 75.7 11.5 109 353-464 3-114 (281)
179 4b4t_Q 26S proteasome regulato 98.3 7.2E-06 2.5E-10 79.3 14.0 165 318-484 57-244 (434)
180 3rkv_A Putative peptidylprolyl 98.3 3.1E-06 1.1E-10 69.3 9.3 63 423-485 64-126 (162)
181 3ro3_A PINS homolog, G-protein 98.3 3.1E-06 1.1E-10 69.0 9.3 130 356-485 11-158 (164)
182 3dss_A Geranylgeranyl transfer 98.3 0.00013 4.4E-09 66.5 20.2 229 223-464 40-317 (331)
183 1p5q_A FKBP52, FK506-binding p 98.2 1.6E-05 5.4E-10 73.9 14.2 126 317-450 148-293 (336)
184 3k9i_A BH0479 protein; putativ 98.2 1.3E-06 4.5E-11 67.1 5.7 85 402-486 2-91 (117)
185 3dss_A Geranylgeranyl transfer 98.2 0.00026 8.8E-09 64.5 21.3 217 262-486 41-305 (331)
186 3n71_A Histone lysine methyltr 98.2 1.2E-05 4.1E-10 78.1 13.2 129 363-491 318-470 (490)
187 2hr2_A Hypothetical protein; a 98.2 2.7E-06 9.2E-11 67.8 6.8 105 357-464 14-144 (159)
188 2fbn_A 70 kDa peptidylprolyl i 98.2 1.5E-05 5.1E-10 67.7 12.0 96 391-486 39-152 (198)
189 4b4t_Q 26S proteasome regulato 98.2 0.00048 1.6E-08 66.4 24.0 167 214-382 57-244 (434)
190 2l6j_A TPR repeat-containing p 98.2 1E-06 3.4E-11 66.8 3.5 93 389-481 3-103 (111)
191 1dce_A Protein (RAB geranylger 98.1 7.6E-05 2.6E-09 74.3 17.4 167 301-474 45-244 (567)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 5.1E-06 1.7E-10 77.3 8.2 117 354-487 179-295 (338)
193 3ma5_A Tetratricopeptide repea 98.1 1.6E-05 5.5E-10 58.8 9.4 65 421-485 6-70 (100)
194 2kat_A Uncharacterized protein 98.1 1E-05 3.6E-10 61.7 8.5 64 421-484 18-81 (115)
195 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.7E-10 63.7 10.7 135 318-452 11-159 (164)
196 1na3_A Designed protein CTPR2; 98.1 2.8E-05 9.6E-10 56.1 9.4 81 390-470 9-91 (91)
197 1zu2_A Mitochondrial import re 98.0 4.7E-06 1.6E-10 66.3 4.1 49 438-486 62-121 (158)
198 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.6E-05 8.8E-10 75.8 10.2 98 390-487 268-382 (457)
199 3bee_A Putative YFRE protein; 98.0 6.2E-05 2.1E-09 54.4 9.7 70 419-488 3-75 (93)
200 1ihg_A Cyclophilin 40; ppiase 98.0 2.9E-05 9.8E-10 73.0 9.7 113 355-486 224-337 (370)
201 1zu2_A Mitochondrial import re 97.9 3.4E-05 1.2E-09 61.3 7.9 111 367-487 15-149 (158)
202 2l6j_A TPR repeat-containing p 97.9 6.5E-05 2.2E-09 56.5 8.8 67 421-487 3-69 (111)
203 1klx_A Cysteine rich protein B 97.8 0.00031 1E-08 55.4 12.4 112 368-487 9-128 (138)
204 1na3_A Designed protein CTPR2; 97.7 0.00019 6.5E-09 51.5 8.4 66 421-486 8-73 (91)
205 3n71_A Histone lysine methyltr 97.7 0.00048 1.6E-08 66.8 13.2 125 326-450 319-463 (490)
206 2kat_A Uncharacterized protein 97.6 0.00031 1.1E-08 53.2 9.5 80 372-454 3-85 (115)
207 1dce_A Protein (RAB geranylger 97.6 0.00085 2.9E-08 66.7 14.5 152 328-487 40-223 (567)
208 2kc7_A BFR218_protein; tetratr 97.5 0.00018 6E-09 52.8 5.9 79 396-482 6-87 (99)
209 3qww_A SET and MYND domain-con 97.5 0.00064 2.2E-08 64.8 10.7 105 402-524 310-432 (433)
210 1klx_A Cysteine rich protein B 97.4 0.003 1E-07 49.6 12.9 112 330-453 9-128 (138)
211 2kc7_A BFR218_protein; tetratr 97.4 0.00052 1.8E-08 50.2 7.7 60 428-487 6-66 (99)
212 3qww_A SET and MYND domain-con 97.3 0.0015 5.2E-08 62.2 11.7 96 366-461 310-426 (433)
213 3ma5_A Tetratricopeptide repea 97.3 0.00037 1.3E-08 51.3 6.0 65 389-453 6-72 (100)
214 1qsa_A Protein (soluble lytic 97.3 0.1 3.4E-06 52.0 24.5 115 331-450 229-347 (618)
215 3u64_A Protein TP_0956; tetrat 97.3 0.009 3.1E-07 52.3 14.8 88 406-493 179-277 (301)
216 3qwp_A SET and MYND domain-con 97.3 0.0031 1.1E-07 60.2 13.0 101 361-461 294-415 (429)
217 3qwp_A SET and MYND domain-con 97.2 0.0017 5.9E-08 62.0 10.9 112 397-526 294-423 (429)
218 3ly7_A Transcriptional activat 97.2 0.0099 3.4E-07 54.4 14.8 69 387-455 274-343 (372)
219 3ly7_A Transcriptional activat 97.1 0.011 3.7E-07 54.2 13.7 116 369-488 214-342 (372)
220 1wy6_A Hypothetical protein ST 97.0 0.026 9E-07 42.5 12.7 140 327-488 18-157 (172)
221 1pc2_A Mitochondria fission pr 97.0 0.0034 1.2E-07 49.3 8.4 92 368-461 12-110 (152)
222 3lvg_A Clathrin heavy chain 1; 96.9 0.00018 6E-09 67.2 0.8 251 61-337 40-325 (624)
223 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0081 2.8E-07 44.3 9.8 73 391-463 6-87 (104)
224 3mkq_A Coatomer beta'-subunit; 96.8 0.04 1.4E-06 57.8 17.3 130 254-416 633-762 (814)
225 1pc2_A Mitochondria fission pr 96.7 0.0082 2.8E-07 47.1 8.4 65 420-484 30-99 (152)
226 3bee_A Putative YFRE protein; 96.7 0.012 4.1E-07 42.2 8.7 67 388-454 4-75 (93)
227 3mkq_A Coatomer beta'-subunit; 96.6 0.24 8E-06 51.8 21.8 127 153-308 633-759 (814)
228 3mkq_B Coatomer subunit alpha; 96.6 0.072 2.5E-06 42.9 13.5 105 292-417 12-116 (177)
229 2v5f_A Prolyl 4-hydroxylase su 96.4 0.02 6.7E-07 42.2 8.8 67 420-486 3-76 (104)
230 3mkq_B Coatomer subunit alpha; 95.7 0.65 2.2E-05 37.4 15.9 102 191-312 15-116 (177)
231 1nzn_A CGI-135 protein, fissio 95.6 0.13 4.4E-06 38.7 9.8 92 369-462 16-114 (126)
232 3lvg_A Clathrin heavy chain 1; 95.5 0.053 1.8E-06 51.0 8.9 370 2-413 75-535 (624)
233 3u64_A Protein TP_0956; tetrat 95.5 0.018 6.1E-07 50.5 5.5 105 370-483 179-296 (301)
234 4h7y_A Dual specificity protei 95.4 0.11 3.9E-06 40.1 9.1 100 353-455 12-127 (161)
235 1nzn_A CGI-135 protein, fissio 95.1 0.1 3.6E-06 39.3 7.9 82 405-486 16-104 (126)
236 4gns_B Protein CSD3, chitin bi 95.0 0.18 6.2E-06 51.1 11.9 55 429-483 344-398 (754)
237 3ffl_A Anaphase-promoting comp 94.0 0.23 8E-06 39.2 7.8 31 455-485 121-151 (167)
238 4h7y_A Dual specificity protei 93.4 0.4 1.4E-05 37.1 8.0 96 315-416 12-120 (161)
239 1y8m_A FIS1; mitochondria, unk 93.4 2 7E-05 32.9 12.1 74 387-460 36-115 (144)
240 3o48_A Mitochondria fission 1 93.3 0.59 2E-05 35.4 8.5 72 388-459 38-115 (134)
241 4ady_A RPN2, 26S proteasome re 93.0 9.9 0.00034 39.6 25.2 253 189-450 382-657 (963)
242 1wy6_A Hypothetical protein ST 92.9 2.3 7.9E-05 32.2 16.0 148 116-282 7-157 (172)
243 2ff4_A Probable regulatory pro 92.3 0.5 1.7E-05 44.2 8.9 68 425-492 174-246 (388)
244 4ady_A RPN2, 26S proteasome re 90.8 15 0.0005 38.4 18.1 289 185-484 343-657 (963)
245 3ffl_A Anaphase-promoting comp 90.5 1.5 5.2E-05 34.6 8.4 136 318-466 22-165 (167)
246 4fhn_B Nucleoporin NUP120; pro 90.5 4.7 0.00016 43.8 15.3 147 288-439 815-988 (1139)
247 2ff4_A Probable regulatory pro 90.4 3.6 0.00012 38.4 12.7 54 396-449 177-232 (388)
248 2p58_C Putative type III secre 90.0 3.7 0.00012 29.1 8.9 86 25-118 22-107 (116)
249 4b4t_P 26S proteasome regulato 89.9 13 0.00046 35.2 16.3 190 225-416 29-244 (445)
250 2uwj_G Type III export protein 89.6 3.4 0.00012 29.2 8.5 86 25-118 21-106 (115)
251 3o48_A Mitochondria fission 1 89.3 2.2 7.4E-05 32.3 8.0 47 371-420 60-109 (134)
252 1y8m_A FIS1; mitochondria, unk 89.0 6.4 0.00022 30.2 11.4 69 419-487 36-108 (144)
253 3ltm_A Alpha-REP4; protein eng 88.4 9.7 0.00033 31.5 17.5 9 155-163 101-109 (211)
254 3esl_A Checkpoint serine/threo 85.5 11 0.00039 30.8 10.9 49 404-452 93-145 (202)
255 1v54_E Cytochrome C oxidase po 85.1 6.9 0.00024 27.8 8.0 62 332-398 26-87 (109)
256 1v54_E Cytochrome C oxidase po 85.0 7.1 0.00024 27.8 8.0 47 416-462 39-85 (109)
257 4gns_B Protein CSD3, chitin bi 84.8 4.2 0.00014 41.4 9.8 52 156-208 344-398 (754)
258 2wpv_A GET4, UPF0363 protein Y 84.2 22 0.00077 31.6 21.1 168 184-383 36-217 (312)
259 4fhn_B Nucleoporin NUP120; pro 84.0 12 0.0004 40.8 13.6 165 185-373 816-990 (1139)
260 1zbp_A Hypothetical protein VP 83.5 2.9 0.0001 36.1 6.8 56 399-454 6-63 (273)
261 3ltj_A Alpharep-4; protein eng 83.1 18 0.0006 29.6 18.9 40 187-226 65-104 (201)
262 3txn_A 26S proteasome regulato 82.7 30 0.001 32.0 28.0 297 150-488 20-346 (394)
263 1zbp_A Hypothetical protein VP 81.8 24 0.00082 30.5 11.8 51 327-381 8-58 (273)
264 3ltm_A Alpha-REP4; protein eng 81.8 21 0.0007 29.5 20.5 48 148-196 32-79 (211)
265 2y69_E Cytochrome C oxidase su 77.9 11 0.00038 28.5 7.3 61 333-398 70-130 (152)
266 4a1g_A Mitotic checkpoint seri 77.5 23 0.00079 27.5 9.7 47 441-487 84-132 (152)
267 3ltj_A Alpharep-4; protein eng 77.0 28 0.00097 28.3 21.2 90 170-266 17-106 (201)
268 3txn_A 26S proteasome regulato 75.3 52 0.0018 30.5 21.2 157 290-450 104-283 (394)
269 4b4t_R RPN7, 26S proteasome re 75.2 18 0.00062 34.1 10.3 59 357-416 134-194 (429)
270 2wvi_A Mitotic checkpoint seri 73.3 32 0.0011 27.2 9.8 31 422-452 96-126 (164)
271 3lpz_A GET4 (YOR164C homolog); 72.7 54 0.0018 29.5 21.7 169 287-484 37-215 (336)
272 2p58_C Putative type III secre 72.2 23 0.0008 25.1 10.2 48 190-239 49-96 (116)
273 3esl_A Checkpoint serine/threo 71.0 42 0.0014 27.5 9.9 70 79-150 82-151 (202)
274 4b4t_R RPN7, 26S proteasome re 70.7 44 0.0015 31.4 11.9 98 287-384 133-238 (429)
275 2y69_E Cytochrome C oxidase su 69.6 34 0.0012 25.9 9.2 50 413-462 79-128 (152)
276 4b4t_P 26S proteasome regulato 66.4 89 0.003 29.5 22.5 143 195-343 30-204 (445)
277 2uwj_G Type III export protein 62.9 38 0.0013 24.0 9.4 85 266-358 22-106 (115)
278 2qx5_A Nucleoporin NIC96; mRNA 58.4 1.5E+02 0.0053 29.6 14.1 16 467-482 549-564 (661)
279 1qsa_A Protein (soluble lytic 58.3 1.5E+02 0.0051 29.4 39.6 369 30-448 56-439 (618)
280 4aez_C MAD3, mitotic spindle c 58.3 31 0.0011 28.8 7.0 49 404-452 131-180 (223)
281 4a1g_A Mitotic checkpoint seri 56.9 67 0.0023 24.9 9.9 58 94-151 81-138 (152)
282 1oyz_A Hypothetical protein YI 54.7 1E+02 0.0035 26.5 23.9 180 43-228 35-222 (280)
283 2zu6_B Programmed cell death p 54.5 89 0.003 27.7 9.9 67 318-389 168-236 (307)
284 3kae_A CDC27, possible protein 54.4 80 0.0027 25.1 10.2 76 403-481 46-139 (242)
285 4gq2_M Nucleoporin NUP120; bet 54.1 1.1E+02 0.0037 32.4 12.2 85 360-450 816-925 (950)
286 4aez_C MAD3, mitotic spindle c 53.9 96 0.0033 25.9 9.6 57 94-150 130-186 (223)
287 1wdy_A 2-5A-dependent ribonucl 53.2 1.1E+02 0.0036 26.1 10.8 47 263-309 192-240 (285)
288 2wvi_A Mitotic checkpoint seri 52.3 84 0.0029 24.7 10.1 58 95-152 77-134 (164)
289 3lpz_A GET4 (YOR164C homolog); 50.7 1.4E+02 0.0048 26.8 26.3 167 184-382 38-215 (336)
290 3bqo_A Telomeric repeat-bindin 48.7 97 0.0033 25.2 8.0 70 406-475 94-170 (211)
291 1oyz_A Hypothetical protein YI 47.5 1.3E+02 0.0046 25.7 23.0 10 441-450 253-262 (280)
292 2wpv_A GET4, UPF0363 protein Y 47.1 1.5E+02 0.0053 26.2 22.5 170 287-485 35-217 (312)
293 4gq2_M Nucleoporin NUP120; bet 46.1 2.5E+02 0.0084 29.7 13.3 129 290-436 815-950 (950)
294 2nsz_A Programmed cell death p 46.1 91 0.0031 23.3 7.5 62 288-352 10-76 (129)
295 4b4t_S RPN3, 26S proteasome re 45.6 66 0.0023 30.9 8.0 62 355-416 232-296 (523)
296 1wdy_A 2-5A-dependent ribonucl 45.5 93 0.0032 26.5 8.9 16 295-310 112-127 (285)
297 1wgl_A TOLL-interacting protei 44.2 24 0.00081 22.2 3.2 48 443-491 11-58 (59)
298 3mv2_A Coatomer subunit alpha; 42.9 1.8E+02 0.0062 25.9 11.9 55 417-485 200-256 (325)
299 2nsz_A Programmed cell death p 42.7 74 0.0025 23.8 6.5 67 318-389 9-77 (129)
300 3kea_A K1L; tropism, ANK repea 42.4 89 0.003 27.1 8.2 20 52-72 35-54 (285)
301 1ya0_A SMG-7 transcript varian 41.9 1E+02 0.0035 29.6 8.8 54 429-482 159-212 (497)
302 1n11_A Ankyrin; clathrin, BAND 39.6 64 0.0022 30.1 7.2 354 88-485 22-402 (437)
303 2ion_A PDCD4, programmed cell 38.2 78 0.0027 24.6 6.1 62 288-352 12-78 (152)
304 2d2s_A Exocyst complex compone 37.8 1.5E+02 0.005 25.1 8.2 21 361-381 25-45 (235)
305 2ion_A PDCD4, programmed cell 37.2 96 0.0033 24.0 6.5 66 318-388 11-78 (152)
306 4ets_A Ferric uptake regulatio 37.2 96 0.0033 24.3 6.7 68 94-163 13-83 (162)
307 4b4t_S RPN3, 26S proteasome re 37.1 93 0.0032 29.9 7.5 68 390-457 231-305 (523)
308 2o03_A Probable zinc uptake re 36.0 70 0.0024 23.9 5.5 48 12-59 12-59 (131)
309 3bu8_A Telomeric repeat-bindin 35.9 1.2E+02 0.0041 25.0 6.8 60 370-429 88-154 (235)
310 2cfu_A SDSA1; SDS-hydrolase, l 35.6 90 0.0031 31.3 7.7 63 406-471 436-498 (658)
311 2xig_A Ferric uptake regulatio 34.3 94 0.0032 24.0 6.1 43 17-59 33-75 (150)
312 3ygs_P Procaspase 9; apoptosis 33.6 50 0.0017 23.3 4.0 63 31-97 25-87 (97)
313 3ygs_P Procaspase 9; apoptosis 32.8 57 0.0019 23.0 4.2 38 299-336 51-88 (97)
314 3mwm_A ZUR, putative metal upt 32.4 82 0.0028 23.9 5.4 47 13-59 16-62 (139)
315 3kea_A K1L; tropism, ANK repea 31.7 2.3E+02 0.008 24.3 9.1 56 397-452 133-188 (285)
316 1ug3_A EIF4GI, eukaryotic prot 30.9 2.9E+02 0.01 24.7 10.0 124 48-175 14-166 (339)
317 1n11_A Ankyrin; clathrin, BAND 30.3 1.5E+02 0.0051 27.5 8.1 332 121-489 18-370 (437)
318 2d2s_A Exocyst complex compone 30.0 1.8E+02 0.0062 24.5 7.5 92 320-416 22-117 (235)
319 1mzb_A Ferric uptake regulatio 29.9 92 0.0031 23.5 5.3 47 13-59 20-67 (136)
320 2xig_A Ferric uptake regulatio 29.9 1.9E+02 0.0064 22.2 7.3 60 102-163 16-75 (150)
321 2fe3_A Peroxide operon regulat 29.8 99 0.0034 23.6 5.5 37 34-72 11-47 (145)
322 1oai_A Nuclear RNA export fact 29.7 40 0.0014 21.2 2.6 24 92-115 34-57 (59)
323 2p1h_A APAF-1, apoptotic prote 29.7 1.4E+02 0.0047 20.6 6.8 63 269-335 24-86 (94)
324 2w57_A Ferric uptake regulatio 27.3 1.9E+02 0.0065 22.2 6.8 60 102-163 6-66 (150)
325 3eu9_A Huntingtin-interacting 26.9 87 0.003 25.8 5.3 206 261-486 17-237 (240)
326 1mzb_A Ferric uptake regulatio 26.6 1.8E+02 0.006 21.8 6.4 59 103-163 8-67 (136)
327 2w57_A Ferric uptake regulatio 26.5 1.1E+02 0.0039 23.5 5.3 47 13-59 19-66 (150)
328 3l6a_A Eukaryotic translation 26.4 1E+02 0.0035 28.1 5.8 61 48-109 15-79 (364)
329 4ets_A Ferric uptake regulatio 25.9 1.2E+02 0.004 23.8 5.4 41 30-72 18-58 (162)
330 2r9g_A AAA ATPase, central reg 25.9 2.7E+02 0.0092 22.7 8.5 63 215-281 14-84 (204)
331 2fu4_A Ferric uptake regulatio 25.8 1.4E+02 0.0048 19.8 5.2 46 14-59 20-66 (83)
332 3eyy_A Putative iron uptake re 25.1 1.2E+02 0.0041 23.1 5.2 46 13-59 21-66 (145)
333 3mwm_A ZUR, putative metal upt 25.0 1.1E+02 0.0037 23.2 4.9 45 119-163 18-62 (139)
334 3eu9_A Huntingtin-interacting 24.6 1.4E+02 0.0048 24.4 6.2 19 292-310 214-232 (240)
335 3jxi_A Vanilloid receptor-rela 23.9 2E+02 0.0068 24.1 7.2 113 89-205 14-161 (260)
336 2fe3_A Peroxide operon regulat 23.8 2.4E+02 0.0082 21.4 7.3 39 262-300 33-71 (145)
337 3b7b_A Euchromatic histone-lys 22.2 84 0.0029 26.0 4.3 208 270-485 24-236 (237)
338 2crb_A Nuclear receptor bindin 21.9 1.7E+02 0.006 20.3 4.6 26 424-449 17-42 (97)
339 2jy5_A Ubiquilin-1; UBA, alter 21.9 1.4E+02 0.0048 18.0 5.2 38 405-445 11-48 (52)
340 2dah_A Ubiquilin-3; UBA domain 21.8 1.5E+02 0.005 18.1 4.3 39 405-446 8-46 (54)
341 1k1a_A B-cell lymphoma 3-encod 21.1 3.2E+02 0.011 22.2 7.8 182 15-206 11-205 (241)
342 2o03_A Probable zinc uptake re 21.0 1.1E+02 0.0039 22.7 4.3 40 124-163 20-59 (131)
343 3bge_A Predicted ATPase; struc 21.0 3.3E+02 0.011 22.2 6.9 47 215-264 7-56 (201)
344 3bu8_A Telomeric repeat-bindin 20.1 1.2E+02 0.0042 25.0 4.3 65 406-470 88-162 (235)
345 1te4_A Conserved protein MTH18 20.1 2.6E+02 0.0089 20.4 7.0 49 147-196 54-102 (131)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-38 Score=323.66 Aligned_cols=427 Identities=11% Similarity=0.060 Sum_probs=373.4
Q ss_pred CchhHHHHHHHHHhhcCCChhHHHHHhhcCC--CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHH
Q 009663 43 QTNFYAFKLVRFCTLKLSNLTYARFIFDHLT--TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHV 120 (529)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 120 (529)
+++..++.++..|.+.| ++++|..+|+++. .|+..++..++..+... |++++|+.+|+.+... +++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~---~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDITGNPNDAFWLAQVYCCT-GDYARAKCLLTKEDLY---NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TCHHHHHHHHHHTCGG---GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc-CchHHHHHHHHHHhhCCCchHHHHHHHHHHHc-CcHHHHHHHHHHHhcc---ccchhHHHHH
Confidence 57788999999999999 9999999999885 57888899999999999 9999999999988654 6788899999
Q ss_pred HHhCccCCCchHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--CC-hh
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKS---------------GFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--RN-VV 182 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~-~~ 182 (529)
+.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.| ++++|.++|+++.. |+ ..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCchhhH
Confidence 99999999999999999853211 12335789999999999999 99999999999875 32 22
Q ss_pred hHHH--------------------------------------HHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHH
Q 009663 183 SWTA--------------------------------------MISGYTRVGDIKNAASLFDSMPD--RDVPAWNSVIAGC 222 (529)
Q Consensus 183 ~~~~--------------------------------------ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 222 (529)
.+.. ++..|.+.|++++|.++|+++.+ ++..+|+.++..|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 3322 24556678999999999999987 7899999999999
Q ss_pred HhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHH
Q 009663 223 TQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLK 302 (529)
Q Consensus 223 ~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 302 (529)
.+.|++++|+++|+++... + +.+..++..++.++.+.|++++|..+++.+.+..+ .+..+++.++.+|.+.|+++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~---~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEI---D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH---C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHHc---C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHH
Confidence 9999999999999999854 2 33667889999999999999999999999997653 47788999999999999999
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 303 EARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 303 ~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
+|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+ . .+.+..++..++.+|.+.|++++|.++|++
T Consensus 391 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR---L-FQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---T-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h-CccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999864 34677999999999999999999999999975 3 334778999999999999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 380 MTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-------KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 380 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
+.+.. +.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+
T Consensus 467 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 467 SYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 98642 346889999999999999999999999988 44777 78999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 451 IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 451 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-37 Score=314.06 Aligned_cols=437 Identities=7% Similarity=-0.049 Sum_probs=378.8
Q ss_pred HHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcC--CCCChhHHHHHHHHHhcCCC
Q 009663 15 QVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHL--TTPNTYLYTAMITAYASQPA 92 (529)
Q Consensus 15 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~ 92 (529)
.+...+...++.+++..+++.+.+. .|+..++..++..|.+.| ++++|..+|+.+ .+++..+|+.++..+.+. |
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 164 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTG-DYARAKCLLTKEDLYNRSSACRYLAAFCLVKL-Y 164 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTT-CHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcC-cHHHHHHHHHHHhccccchhHHHHHHHHHHHH-h
Confidence 3444445568889999999999854 567788899999999999 999999999998 478899999999999999 9
Q ss_pred ChHHHHHHHHHHHHC---------------CCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHH---
Q 009663 93 HASSAFSLYRDMVRR---------------GQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETA--- 154 (529)
Q Consensus 93 ~~~~a~~~~~~m~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--- 154 (529)
++++|+.+|+++... +. +++..+|+.++.+|.+.|++++|.++|+++.+.++. +...+..
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~ 242 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVS 242 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHhccCCcccccccccccccccccc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHH
Confidence 999999999953222 11 235789999999999999999999999999987643 3333332
Q ss_pred -----------------------------------HHHHHHhcCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCH
Q 009663 155 -----------------------------------LVNSYSRSGNDIGIARKLFDEMSD--RNVVSWTAMISGYTRVGDI 197 (529)
Q Consensus 155 -----------------------------------l~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~ 197 (529)
++..|.+.| ++++|.++|+++.. ++..+|+.++.+|.+.|++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED-ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH-HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH
Confidence 255666789 99999999999998 7999999999999999999
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHH
Q 009663 198 KNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHG 274 (529)
Q Consensus 198 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 274 (529)
++|.++|+++.+ .+..+|..++.+|.+.|++++|.++++++... .+.+..++..++..+.+.|++++|..+|+
T Consensus 322 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 322 IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR----HPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999853 46788999999999999999999999999743 35578899999999999999999999999
Q ss_pred HHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC
Q 009663 275 YVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIR 351 (529)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 351 (529)
++.+..+ .+..+++.++.+|.+.|++++|+++|+++. ..+..+|..++.+|.+.|++++|.++|+++.+ . .+
T Consensus 398 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-~~ 472 (597)
T 2xpi_A 398 KSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA---L-FQ 472 (597)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---H-CC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h-CC
Confidence 9998754 367799999999999999999999999764 34677999999999999999999999999975 3 23
Q ss_pred CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 009663 352 PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTY---RIEPQ--IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVV 424 (529)
Q Consensus 352 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 424 (529)
.+..+|..++..+.+.|++++|..+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++|+++ ...| +..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 467899999999999999999999999997542 55776 789999999999999999999999998 3345 7899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
|..++.+|.+.|++++|.+.++++.+++|+++..+..++.+|.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.5e-27 Score=229.95 Aligned_cols=370 Identities=12% Similarity=0.059 Sum_probs=287.8
Q ss_pred HHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCC
Q 009663 86 AYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGND 165 (529)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 165 (529)
.+.+. |++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.| +
T Consensus 8 ~~~~~-g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g-~ 82 (388)
T 1w3b_A 8 REYQA-GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG-Q 82 (388)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-C
T ss_pred HHHHC-CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC-C
Confidence 34445 77777777777777664 4455556666666777777777777777777654 446677777777777777 7
Q ss_pred HHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 166 IGIARKLFDEMSD--R-NVVSWTAMISGYTRVGDIKNAASLFDSMPD--R-DVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 166 ~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
+++|.+.|+++.. | +..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888777777654 3 345677777777777888888777777543 3 34567777788888888888888888887
Q ss_pred hcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCCh
Q 009663 240 MEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRL 316 (529)
Q Consensus 240 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~ 316 (529)
.. .+.+..++..+..++...|++++|...|+++.+.++. +...+..+...+...|++++|...|++.. ..+.
T Consensus 163 ~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (388)
T 1w3b_A 163 ET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred Hh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence 43 2334667788888888888888888888888887643 56677888888888999999988887653 3456
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCL 396 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 396 (529)
.++..+..++...|++++|+..|+++.+ . .+.+..++..+..++.+.|++++|...|+++.+. .+.+..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 311 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---L-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---T-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHH
Confidence 6888899999999999999999999875 2 1224667888889999999999999999999864 24468889999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
...+.+.|++++|.+.++++ ...| +..++..++..+.+.|++++|...++++.+..|+++.++..++.++...|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999987 5555 578889999999999999999999999999999999999999998877764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.5e-26 Score=222.95 Aligned_cols=349 Identities=13% Similarity=0.080 Sum_probs=304.9
Q ss_pred HHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCH
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD---RNVVSWTAMISGYTRVGDI 197 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~ 197 (529)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...| ++++|...++.... .+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~-~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345667899999999999998875 335667778888999999 99999999988765 4667899999999999999
Q ss_pred HHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC-HHHHHHHHHHhhccCCchHHHHHH
Q 009663 198 KNAASLFDSMPD--R-DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN-QVTLVCALSAIGHTGMLQLGKVIH 273 (529)
Q Consensus 198 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 273 (529)
++|...|+++.. | +..+|..+..++.+.|++++|.+.|+++... .|+ ...+..+...+...|++++|...|
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-----NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999998753 3 5668999999999999999999999999843 554 445667777889999999999999
Q ss_pred HHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 274 GYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
+++.+..+. +..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..+++... .
T Consensus 159 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~ 232 (388)
T 1w3b_A 159 LKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS-----L 232 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH-----H
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----h
Confidence 999987643 567889999999999999999999998653 3556899999999999999999999999865 3
Q ss_pred CC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHH
Q 009663 351 RP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-K-IEPDEVVWG 426 (529)
Q Consensus 351 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~ 426 (529)
.| +..++..+..++...|++++|...|+++.+. .| ++.+|..+...+.+.|++++|.+.|+++ . .+.+..++.
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 34 5678889999999999999999999999853 45 5788999999999999999999999998 3 345788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.+...+...|++++|+..++++.+..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999865
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2e-27 Score=232.95 Aligned_cols=184 Identities=10% Similarity=0.111 Sum_probs=165.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCC---------chHHHHHHHHHHHhCCCC
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGM---------LQLGKVIHGYVYRNGLDL 283 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~ 283 (529)
..++.+|.+|++.|++++|+++|++|... |+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.|
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~---Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN---GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 35788899999999999999999999887 999999999999999887654 577899999999999999
Q ss_pred CccHHHHHHHHHHhCCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHH
Q 009663 284 DSFISNALIDMYGKCGSLKEARRAFDRNS----KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFIS 359 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ 359 (529)
|..+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+ .|+.||..||++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~G~~Pd~~ty~~ 180 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE---SEVVPEEPELAA 180 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCCHHHHHH
Confidence 99999999999999999999999998875 46888999999999999999999999999998 999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRA 403 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 403 (529)
+|.+|++.|++++|.+++++|.+. |+.|+..||+.++..|+..
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999876 9999999999999888753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=7.9e-27 Score=228.67 Aligned_cols=199 Identities=12% Similarity=0.118 Sum_probs=172.2
Q ss_pred HHHHHHHHhhhcccCCCCCCH-HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCC--------
Q 009663 230 DAISFFRRMGMEVSDNIRPNQ-VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS-------- 300 (529)
Q Consensus 230 ~A~~~~~~m~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------- 300 (529)
.+..+.+++.+. +..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+.
T Consensus 8 ~~e~L~~~~~~k---~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 8 PSENLSRKAKKK---AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred hHHHHHHHHHHh---cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 344555666544 555443 46888999999999999999999999999999999999999999987664
Q ss_pred -HHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHH
Q 009663 301 -LKEARRAFDRNS----KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRA 375 (529)
Q Consensus 301 -~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 375 (529)
+++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA---FGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 788999999885 46889999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 009663 376 YFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM---KIEPDEVVWGSLLNGCKIY 435 (529)
Q Consensus 376 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 435 (529)
+|++|.+. |+.||..+|+.||.+|++.|++++|.++|++| +..|+..||+.++..+...
T Consensus 162 l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 162 VDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999877 99999999999999999999999999999999 7899999999999988754
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.7e-24 Score=215.20 Aligned_cols=427 Identities=8% Similarity=-0.040 Sum_probs=292.4
Q ss_pred HHHHHHHHHhhcCCChhHHHHHhhcCC--CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhC
Q 009663 47 YAFKLVRFCTLKLSNLTYARFIFDHLT--TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSC 124 (529)
Q Consensus 47 ~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~ 124 (529)
.+..+-..+.+.| ++++|...|+++. .|+...|..+...+... |++++|+..|+++.+.+ +.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNK-KYDDAIKYYNWALELKEDPVFYSNLSACYVSV-GDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHH-hhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 3444555566666 7777777766664 35666666666666666 77777777777666654 44556666666666
Q ss_pred ccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC----CChhhHHHH---HHHHHhcCCH
Q 009663 125 PDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD----RNVVSWTAM---ISGYTRVGDI 197 (529)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~----~~~~~~~~l---l~~~~~~g~~ 197 (529)
...|++++|...++.+.+.+. ++......++..+.... ....+.+.+..+.. ++...+... ..........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQ-AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHH-HHHHHTTC---------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 666777777777766666542 23333333444333333 33333333321111 000000000 0000011111
Q ss_pred HHHHHHHhhCC---------CC-ChhhHHHHHHHHHh---CCChhHHHHHHHHhhh-----cc-cCCC----CCCHHHHH
Q 009663 198 KNAASLFDSMP---------DR-DVPAWNSVIAGCTQ---NGLFSDAISFFRRMGM-----EV-SDNI----RPNQVTLV 254 (529)
Q Consensus 198 ~~A~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~-~~~~----~p~~~~~~ 254 (529)
..+...+.... .| +...+......+.. .|++++|+..|+++.. .. .+.. +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 11122222221 11 24455555555554 8999999999999874 10 0000 22345677
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC
Q 009663 255 CALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQ 331 (529)
Q Consensus 255 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 331 (529)
.+..++...|++++|...++.+.+..+. ..++..+..++...|++++|...|+++.+ .+...|..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 7888899999999999999999988765 77888899999999999999999987654 355688999999999999
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALE 411 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 411 (529)
+++|...++++.+ .. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|..
T Consensus 320 ~~~A~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 320 YDQAGKDFDKAKE---LD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TTHHHHHHHHHHH---TC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH---hC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999975 22 2356778888899999999999999999998652 3357788999999999999999999
Q ss_pred HHHhC-C---CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 412 VVKGM-K---IEPD----EVVWGSLLNGCKI---YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 412 ~~~~~-~---~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
.++++ . ..++ ...+..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99887 2 2222 4488889999999 9999999999999999999999999999999999999999999999
Q ss_pred HHhhCCC
Q 009663 481 MLKDRNA 487 (529)
Q Consensus 481 ~~~~~~~ 487 (529)
++.+...
T Consensus 474 ~a~~~~~ 480 (514)
T 2gw1_A 474 ESADLAR 480 (514)
T ss_dssp HHHHHCS
T ss_pred HHHHhcc
Confidence 9987654
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-23 Score=210.61 Aligned_cols=433 Identities=9% Similarity=-0.061 Sum_probs=324.1
Q ss_pred HHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhc
Q 009663 13 NQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYAS 89 (529)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~ 89 (529)
.......+-..++...|...++.+.+.. |++..+..+...|.+.| ++++|...|+.+. +.+..+|..+...+..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVG-DLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHh-hHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3455666777899999999999999886 68999999999999999 9999999999875 4566789999999999
Q ss_pred CCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCCCH
Q 009663 90 QPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETAL---VNSYSRSGNDI 166 (529)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~g~~~ 166 (529)
. |++++|+..|+++.+.+ +++......++..+........+.+.+..+...+..|+......- ........ ..
T Consensus 86 ~-g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 161 (514)
T 2gw1_A 86 L-GKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP-SV 161 (514)
T ss_dssp T-TCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC-CH
T ss_pred H-hhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc-hh
Confidence 9 99999999999999987 556666666665554444344444444333333222222111111 11111111 22
Q ss_pred HHHHHHHhhCCC---------C-ChhhHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-ChhhHH
Q 009663 167 GIARKLFDEMSD---------R-NVVSWTAMISGYTR---VGDIKNAASLFDSMPD----------------R-DVPAWN 216 (529)
Q Consensus 167 ~~A~~~~~~~~~---------~-~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~ 216 (529)
..+...+..... | +...+......+.. .|++++|...|+++.+ | +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 222223322221 1 23445555555554 8999999999987644 1 345788
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYG 296 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (529)
.+...+...|++++|...|+++... .|+...+..+..++...|++++|...++.+.+..+ .+..++..+..+|.
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIEL-----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh-----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 8899999999999999999999854 44477888888999999999999999999988754 36678889999999
Q ss_pred hCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 297 KCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
..|++++|...|++.. ..+...+..+...+...|++++|+..++++.+ . .+.+...+..+...+...|++++|
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR---K-FPEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH---H-STTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---H-cccCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999998764 34566899999999999999999999999975 2 223557788889999999999999
Q ss_pred HHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 009663 374 RAYFKLMTKTYRIEPQ----IEHYGCLVDLLGR---AGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFA 444 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 444 (529)
...++++.+...-.++ ...+..+...|.. .|++++|...++++ ...| +..++..+...+...|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998764222222 3489999999999 99999999999988 3344 678889999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHH
Q 009663 445 VKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 445 ~~~~~~~~p~~~~~~~~l 462 (529)
++++.+..|+++..+..+
T Consensus 472 ~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 472 FEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHH
Confidence 999999999888877766
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=4.8e-23 Score=207.38 Aligned_cols=420 Identities=11% Similarity=0.025 Sum_probs=274.7
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHH
Q 009663 45 NFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVL 121 (529)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 121 (529)
...+..+...+.+.| ++++|...|+.+. +.+..+|..+...+... |++++|++.|+++.+.+ +.+..++..+.
T Consensus 25 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~--p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAK-NFNEAIKYYQYAIELDPNEPVFYSNISACYIST-GDLEKVIEFTTKALEIK--PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 345566667777777 8888888887764 35667777777777777 88888888888887765 55677777777
Q ss_pred HhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhcC
Q 009663 122 KSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR------NVVSWTAMISGYTRVG 195 (529)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g 195 (529)
.++...|++++|...++ .... .|+ .....+..+...+ ....|...++++... ........+..+....
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~-~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERN-LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHH-HHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHH-HHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 77888888888888775 3222 222 1122233445555 566777777776541 1122234444555566
Q ss_pred CHHHHHHHHhhCCCCChh---hHHHHHHHHHhC--------CChhHHHHHHHHhhhcccCCCCCC--------HHHHHHH
Q 009663 196 DIKNAASLFDSMPDRDVP---AWNSVIAGCTQN--------GLFSDAISFFRRMGMEVSDNIRPN--------QVTLVCA 256 (529)
Q Consensus 196 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~p~--------~~~~~~l 256 (529)
+.+.+...+......+.. ....+...+... |++++|+.+|+++.. ..|+ ..++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~-----~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS-----ANTVDDPLRENAALALCYT 249 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-----HCCCcchhhHHHHHHHHHH
Confidence 666666666665544332 233333322222 467778888887763 3443 2235555
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChh
Q 009663 257 LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSE 333 (529)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 333 (529)
...+...|++++|...++.+.+..+ +..++..+...+...|++++|...|+++. ..+..+|..+...+...|+++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Confidence 5667777888888888888877654 36667777777888888888888877654 234567777788888888888
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVV 413 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 413 (529)
+|+..++++.+ .. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...|...|++++|...|
T Consensus 328 ~A~~~~~~a~~---~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 328 NAKEDFQKAQS---LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HHHHHHHHHHH---HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH---hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888765 21 2234667777777788888888888888877541 224667777788888888888888888
Q ss_pred HhC-C-------CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 009663 414 KGM-K-------IEPDEVVWGSLLNGCKIY----------GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEV 475 (529)
Q Consensus 414 ~~~-~-------~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 475 (529)
+++ . .......+......+... |++++|+..++++.+..|+++.++..++.+|.+.|++++|
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 776 1 111223344445566666 8888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCC
Q 009663 476 RKVRKMLKDRNA 487 (529)
Q Consensus 476 ~~~~~~~~~~~~ 487 (529)
...+++..+...
T Consensus 482 ~~~~~~al~~~~ 493 (537)
T 3fp2_A 482 IELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhCC
Confidence 888888776543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.5e-22 Score=197.44 Aligned_cols=319 Identities=15% Similarity=0.128 Sum_probs=231.9
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 009663 148 YPVVETALVNSYSRSGNDIGIARKLFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAG 221 (529)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 221 (529)
+...+..+...+.+.| ++++|..+|+++.. .+..+|..+..++...|++++|...|+++.+ .+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3444555555555555 55555555555442 2344555555555555555555555555432 245566777777
Q ss_pred HHhCCChhHHHHHHHHhhhcccCCCCCCH----HHHHHH------------HHHhhccCCchHHHHHHHHHHHhCCCCCc
Q 009663 222 CTQNGLFSDAISFFRRMGMEVSDNIRPNQ----VTLVCA------------LSAIGHTGMLQLGKVIHGYVYRNGLDLDS 285 (529)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 285 (529)
|.+.|++++|.+.|+++. ...|+. ..+..+ ...+...|++++|...++.+.+..+ .+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 177 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVL-----KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDA 177 (450)
T ss_dssp HHHTTCHHHHHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHcCCHHHHHHHHHHHH-----hcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCh
Confidence 777777777777777776 334443 333333 3347778888888888888887754 366
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCH-HHHHHH-
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDG-VTFISL- 360 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l- 360 (529)
.++..++.+|...|++++|...|+++. ..+..+|..+..+|...|++++|+..|+++.. ..|+. ..+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~~~ 252 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK-----LDQDHKRCFAHYK 252 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCChHHHHHHHH
Confidence 778888888999999999998888764 34667888999999999999999999999865 33433 333333
Q ss_pred -----------HHHHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH
Q 009663 361 -----------LNACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DE 422 (529)
Q Consensus 361 -----------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 422 (529)
...+...|++++|..+|+++.+. .|+ ...+..+..++.+.|++++|...++++ ...| +.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 77888999999999999999864 454 457888999999999999999999987 4445 68
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH------------HHhcC-----CHHHHHHHHHH
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANI------------YGELG-----KWDEVRKVRKM 481 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~ 481 (529)
..|..++.+|...|++++|...+++++++.|+++.++..++.+ |...| +.+++.+.+++
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988844 44444 55666777765
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.2e-22 Score=197.85 Aligned_cols=356 Identities=10% Similarity=0.063 Sum_probs=235.7
Q ss_pred hHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHH
Q 009663 63 TYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQ 139 (529)
Q Consensus 63 ~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (529)
..+...|..+. +.+...|..+...+.+. |++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAA-GQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444444443 34456788888888888 99999999999988765 66788888888888899999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--CC-h---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 009663 140 IVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--RN-V---VSWTAMISGYTRVGDIKNAASLFDSMPDRDVP 213 (529)
Q Consensus 140 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~-~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 213 (529)
+.+.+ +.+..++..+..+|.+.| ++++|.+.|+++.. |+ . ..+..+...+...
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------- 144 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ------------------- 144 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------
Confidence 88876 336778888888899999 89999999888866 32 2 4555554432111
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHH
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALID 293 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 293 (529)
.+..+...+...|++++|+..|+++... .+.+...+..+..++...|++++|...++.+.+..+ .+..++..++.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 219 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 1122333455555666666666555432 122444555555555666666666666665555432 23455555666
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CChhHHHH------------HHHHHHHcCChhHHHHHHHHHhhcccCCCCCC-----
Q 009663 294 MYGKCGSLKEARRAFDRNSK---KRLTSWNS------------MINSFALHGQSENSICVFEEMMRCQDHNIRPD----- 353 (529)
Q Consensus 294 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~----- 353 (529)
+|...|++++|...|+++.. .+...+.. +...+...|++++|..+|+++.+ ..|+
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~ 294 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK-----TEPSIAEYT 294 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCCSSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCcchHHH
Confidence 66666666666666655432 12223332 37788888999999999998865 2344
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLN 430 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 430 (529)
...+..+..++.+.|++++|...++++.+. .| +...|..+..+|...|++++|...++++ ...|+ ...+..+..
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 346777888889999999999999988754 44 5788889999999999999999999887 66664 555655553
Q ss_pred H------------HHHcC-----CHHHHHHHHHH-HHhcCCCC
Q 009663 431 G------------CKIYG-----RTDFAEFAVKK-LIEIDPNN 455 (529)
Q Consensus 431 ~------------~~~~g-----~~~~A~~~~~~-~~~~~p~~ 455 (529)
+ |...| +.+++.+.+++ +++..|++
T Consensus 372 ~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 372 AQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 2 33333 56778888886 67777764
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=4.6e-21 Score=192.91 Aligned_cols=429 Identities=9% Similarity=-0.017 Sum_probs=322.4
Q ss_pred HHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhc
Q 009663 13 NQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYAS 89 (529)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~ 89 (529)
.......+...++.+.|...++.+.+.. +.++..+..+...|.+.| ++++|.+.|+.+. +.+..+|..+...+..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3445566667789999999999998874 457888999999999999 9999999999875 4567788889999999
Q ss_pred CCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCCHH
Q 009663 90 QPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGF--EQYPVVETALVNSYSRSGNDIG 167 (529)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~ 167 (529)
. |++++|+..|+.+ ... |+.. ...+..+...+....|...++.+....+ .+........+..+.... +.+
T Consensus 106 ~-g~~~~A~~~~~~~-~~~---~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 177 (537)
T 3fp2_A 106 L-GNFTDAMFDLSVL-SLN---GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF-DSH 177 (537)
T ss_dssp H-TCHHHHHHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS-CHH
T ss_pred c-CCHHHHHHHHHHH-hcC---CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc-ChH
Confidence 9 9999999999744 322 2211 1223344445556788888888865321 111111233445566777 888
Q ss_pred HHHHHHhhCCCCChh---hHHHHHHHHHh--------cCCHHHHHHHHhhCCCC--C--------hhhHHHHHHHHHhCC
Q 009663 168 IARKLFDEMSDRNVV---SWTAMISGYTR--------VGDIKNAASLFDSMPDR--D--------VPAWNSVIAGCTQNG 226 (529)
Q Consensus 168 ~A~~~~~~~~~~~~~---~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g 226 (529)
.+...+......+.. ....+...+.. .|++++|..+|+++.+. + ..++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 888888777764443 33333333322 25889999999987653 2 225777778899999
Q ss_pred ChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHH
Q 009663 227 LFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARR 306 (529)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (529)
++++|...|++... ..|+...+..+..++...|+++.|...++.+.+..+. +..++..+..++...|++++|..
T Consensus 258 ~~~~A~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 258 NLLDAQVLLQESIN-----LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp CHHHHHHHHHHHHH-----HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999984 4677788888999999999999999999999988653 67788999999999999999999
Q ss_pred HHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHh
Q 009663 307 AFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 307 ~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 383 (529)
.|++.. ..+...|..+...+...|++++|...++++.+ . .+.+...+..+...+...|++++|...|+++.+.
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL---K-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 998764 34566899999999999999999999999976 3 2334568888899999999999999999998754
Q ss_pred cCCCC----ChhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009663 384 YRIEP----QIEHYGCLVDLLGRA----------GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKK 447 (529)
Q Consensus 384 ~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 447 (529)
..-.+ ....+..+...+.+. |++++|...|+++ ...| +...+..+...+...|++++|.+.|++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 21111 223345556778888 9999999999988 3344 678899999999999999999999999
Q ss_pred HHhcCCCCchhHHH
Q 009663 448 LIEIDPNNGGYGIM 461 (529)
Q Consensus 448 ~~~~~p~~~~~~~~ 461 (529)
+.++.|+++.....
T Consensus 488 al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 488 SAILARTMDEKLQA 501 (537)
T ss_dssp HHHHC--CHHHHHH
T ss_pred HHHhCCCcHHHHHH
Confidence 99999987666543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.5e-19 Score=170.11 Aligned_cols=303 Identities=14% Similarity=0.091 Sum_probs=191.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 009663 151 VETALVNSYSRSGNDIGIARKLFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQ 224 (529)
Q Consensus 151 ~~~~l~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 224 (529)
.+..+...+...| ++++|...|+++.. .+..++..+..++...|++++|...|+++.+ .+...|..+...+..
T Consensus 5 ~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 3444444444455 45555555544432 1233444445555555555555555544321 244566666777777
Q ss_pred CCChhHHHHHHHHhhhcccCCCCC---C-HHHHHHH------------HHHhhccCCchHHHHHHHHHHHhCCCCCccHH
Q 009663 225 NGLFSDAISFFRRMGMEVSDNIRP---N-QVTLVCA------------LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFIS 288 (529)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~p---~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 288 (529)
.|++++|...|+++. ...| + ...+..+ ...+...|++++|...++.+.+..+ .+..++
T Consensus 84 ~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVL-----KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HTCHHHHHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred cCChHHHHHHHHHHH-----hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 777777777777766 3344 2 2222222 3566777777777777777777654 355667
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC-HHHHH------
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD-GVTFI------ 358 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~-~~~~~------ 358 (529)
..+..++...|++++|...+++..+ .+...+..+...+...|++++|...+++..+ . .|+ ...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~--~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK---L--DQDHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---H--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---h--CccchHHHHHHHHHH
Confidence 7777777788888888877776543 3455777777788888888888888877764 2 232 22222
Q ss_pred ------HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-h----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 009663 359 ------SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-I----EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVW 425 (529)
Q Consensus 359 ------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 425 (529)
.+...+...|++++|...++++.+. .|+ . ..+..+..++...|++++|.+.+++. ...| +..++
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 2245567778888888888887754 333 2 23445667777888888888888776 3334 67777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
..+...+...|++++|...++++.+.+|+++.++..+..+...
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 7777788888888888888888888888777777777665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=5.9e-19 Score=167.53 Aligned_cols=296 Identities=13% Similarity=0.038 Sum_probs=246.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHH
Q 009663 180 NVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCA 256 (529)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~l 256 (529)
|+..+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|+..|+++... .+.+...+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----KMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcchHHHHH
Confidence 355678888999999999999999998753 46778999999999999999999999999853 23356788888
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCC--CCccHHHHH------------HHHHHhCCCHHHHHHHHhhcC---CCChhHH
Q 009663 257 LSAIGHTGMLQLGKVIHGYVYRNGLD--LDSFISNAL------------IDMYGKCGSLKEARRAFDRNS---KKRLTSW 319 (529)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 319 (529)
..++...|++++|...++.+.+..+. .+...+..+ ...+...|++++|...|+++. ..+...+
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 99999999999999999999877541 133444444 578899999999999998764 3466789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHH----
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYG---- 394 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~---- 394 (529)
..+...+...|++++|+..++++.+ ..+.+...+..+...+...|++++|...++.+.+. .|+ ...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~ 230 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASK----LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQ 230 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT----TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHH
Confidence 9999999999999999999999974 23446778889999999999999999999999865 443 33333
Q ss_pred --------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 395 --------CLVDLLGRAGRFEEALEVVKGM-KIEPD-E----VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 395 --------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|+..++++.+..|+++.++.
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 2366789999999999999988 33444 3 23556778899999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 461 MLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++.++...|++++|...++++.+..
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999998764
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=5e-18 Score=159.12 Aligned_cols=281 Identities=9% Similarity=-0.008 Sum_probs=162.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHh
Q 009663 184 WTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAI 260 (529)
Q Consensus 184 ~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~ 260 (529)
+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++... .+.+...+..+...+
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL----YPSNPVSWFAVGCYY 100 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHH
Confidence 33333333344444444444443321 12233334444444455555555555544422 112233444444444
Q ss_pred hccC-CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHH
Q 009663 261 GHTG-MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 261 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 336 (529)
...| ++++|...++.+.+..+ .+..++..+..++...|++++|...|++..+ .+...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 4455 45555555555544432 1344455555555666666666665554332 23345555666667777777777
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCChHHH
Q 009663 337 CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYR-------IEPQIEHYGCLVDLLGRAGRFEEA 409 (529)
Q Consensus 337 ~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 409 (529)
..++++.+ ..+.+...+..+...+...|++++|...++++.+... .+.....+..+..+|...|++++|
T Consensus 180 ~~~~~al~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 180 RFFSQALS----IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH----hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777653 2223456666677777777777777777777664311 122356777788888888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCHH
Q 009663 410 LEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY-GELGKWD 473 (529)
Q Consensus 410 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 473 (529)
...+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8888776 3233 5677778888888888888888888888888888888888888877 4555544
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=4.3e-18 Score=159.61 Aligned_cols=265 Identities=10% Similarity=0.013 Sum_probs=226.9
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHH
Q 009663 210 RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISN 289 (529)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 289 (529)
.++..+..+...+...|++++|+++|+++... .+.+...+..++.++...|++++|..+++.+.+..+ .+..++.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 94 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWF 94 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHH
Confidence 46667888889999999999999999999854 233444566677888999999999999999998765 3677888
Q ss_pred HHHHHHHhCC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHh
Q 009663 290 ALIDMYGKCG-SLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACT 365 (529)
Q Consensus 290 ~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~ 365 (529)
.+...+...| ++++|...|++..+ .+...|..+...+...|++++|+..++++.+ .. +.+...+..+...+.
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~-~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ---LM-KGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hc-cccHHHHHHHHHHHH
Confidence 8999999999 99999999998654 3456899999999999999999999999976 32 224566777888999
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI----------EPDEVVWGSLLNGCK 433 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~ 433 (529)
..|++++|...++++.+ ..| +...+..+...|...|++++|...++++ .. +....++..+...+.
T Consensus 171 ~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 171 LTNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 99999999999999984 345 5788999999999999999999999877 11 334678999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 434 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
..|++++|+..++++.+..|+++.++..++.++.+.|++++|...++++.+..
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999887654
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.1e-16 Score=158.80 Aligned_cols=365 Identities=10% Similarity=0.010 Sum_probs=256.7
Q ss_pred ChhHHHHHHHHHhc----CCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCcc----CCCchHHHHHHHHHHHhCCCC
Q 009663 76 NTYLYTAMITAYAS----QPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPD----VLESRGTKMVHTQIVKSGFEQ 147 (529)
Q Consensus 76 ~~~~~~~ll~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~ 147 (529)
+..++..+-..+.. . +++++|+..|++..+.| +...+..+...+.. .+++++|.+.++...+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETT-KDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 44444444444444 4 66666666666666543 33455555555554 566666666666666554
Q ss_pred chhHHHHHHHHHHh----cCCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHH
Q 009663 148 YPVVETALVNSYSR----SGNDIGIARKLFDEMSD-RNVVSWTAMISGYTR----VGDIKNAASLFDSMPD-RDVPAWNS 217 (529)
Q Consensus 148 ~~~~~~~l~~~~~~----~g~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ 217 (529)
+...+..|...|.. .+ ++++|.+.|++..+ .+...+..+...|.. .++.++|.+.|++..+ .++..+..
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKV-DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44555556666665 56 66777776666554 344556666666665 6677777777766433 45667777
Q ss_pred HHHHHHh----CCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc----cCCchHHHHHHHHHHHhCCCCCccHHH
Q 009663 218 VIAGCTQ----NGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH----TGMLQLGKVIHGYVYRNGLDLDSFISN 289 (529)
Q Consensus 218 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 289 (529)
+...|.. .+++++|+++|++.... + +...+..+...+.. .+++++|..++++..+.| +...+.
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATS---G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777 78888888888887643 2 44556666666654 678888888888887765 345666
Q ss_pred HHHHHHHh----CCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHHc-----CChhHHHHHHHHHhhcccCCCCCCHHHHHH
Q 009663 290 ALIDMYGK----CGSLKEARRAFDRNSKK-RLTSWNSMINSFALH-----GQSENSICVFEEMMRCQDHNIRPDGVTFIS 359 (529)
Q Consensus 290 ~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ 359 (529)
.+...|.. .+++++|...|++..+. +...+..+...|... +++++|+..|++..+ .+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~---~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE---QG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH---TT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh---cC---CHHHHHH
Confidence 67777777 78999999999886554 455777888888887 899999999999876 43 3456666
Q ss_pred HHHHHhCCC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009663 360 LLNACTHGG---LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR----AGRFEEALEVVKGMKIEPDEVVWGSLLNGC 432 (529)
Q Consensus 360 l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 432 (529)
+...+...| ++++|..+|++..+. .++..+..|...|.. .+++++|.++|++.--..+...+..+...|
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y 409 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 666676656 889999999998854 467788888888988 899999999999882234678888888888
Q ss_pred HH----cCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHh
Q 009663 433 KI----YGRTDFAEFAVKKLIEIDPN---NGGYGIMLANIYGE 468 (529)
Q Consensus 433 ~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 468 (529)
.. .+++++|...|+++.+.+|+ ++.....++.++..
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 88 89999999999999998854 66666666665443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.8e-18 Score=164.94 Aligned_cols=259 Identities=12% Similarity=-0.016 Sum_probs=185.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHH
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALI 292 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 292 (529)
..+..+...+.+.|++++|+..|+++... .+.+...+..+..++...|++++|...++.+.+..+ .+..++..+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~ 139 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALA 139 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 34555555556666666666666655532 122344555555555566666666666666555543 2444555556
Q ss_pred HHHHhCCCHHHHHHHHhhcCCC---ChhHHHH---------------HHHHHHHcCChhHHHHHHHHHhhcccCCCC-CC
Q 009663 293 DMYGKCGSLKEARRAFDRNSKK---RLTSWNS---------------MINSFALHGQSENSICVFEEMMRCQDHNIR-PD 353 (529)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-p~ 353 (529)
.+|...|++++|...|+++... +...+.. .+..+...|++++|+..++++.+ .... ++
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~ 216 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR---LDPTSID 216 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH---HSTTSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH---hCcCccc
Confidence 6666666666666666543321 1111110 23333488999999999999976 2211 25
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLN 430 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 430 (529)
..++..+...+...|++++|...++++.+. .| +...+..+...|...|++++|...|+++ ...| +...+..+..
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 293 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 788899999999999999999999999864 44 5789999999999999999999999988 4444 6888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNN-----------GGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.+...|++++|...++++.+..|++ ..++..++.+|...|++++|..++++.
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999999988877 789999999999999999999987643
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.4e-16 Score=159.50 Aligned_cols=412 Identities=10% Similarity=0.018 Sum_probs=286.6
Q ss_pred CCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHH
Q 009663 42 SQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYP 118 (529)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 118 (529)
|-+...+..++. +.+.| +++.|..+|+++. +.+...|..++..+.+. |++++|..+|++++.. .|+...|.
T Consensus 10 P~~~~~w~~l~~-~~~~~-~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~-~~~~~a~~~~~ral~~---~p~~~lw~ 83 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQ-PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-KNYDKVEKLFQRCLMK---VLHIDLWK 83 (530)
T ss_dssp TTCHHHHHHHHH-HHHSS-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTT---CCCHHHHH
T ss_pred CCCHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc---CCChHHHH
Confidence 446778888888 46677 9999999999885 34566888999999888 9999999999999886 45777776
Q ss_pred HHHHhC-ccCCCchHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCCHHHHHHHHhhCCC-CCh
Q 009663 119 HVLKSC-PDVLESRGTKM----VHTQIVKS-GFEQ-YPVVETALVNSYSR---------SGNDIGIARKLFDEMSD-RNV 181 (529)
Q Consensus 119 ~l~~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~~A~~~~~~~~~-~~~ 181 (529)
..+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .| +++.|..+|++... |..
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ-RITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHH-HHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHh-HHHHHHHHHHHHHhchhh
Confidence 666532 34577777765 67666654 4433 45677777776654 67 78889999988775 322
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHh------hhcccCCCCCCH--
Q 009663 182 ---VSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRM------GMEVSDNIRPNQ-- 250 (529)
Q Consensus 182 ---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~~~~~~~p~~-- 250 (529)
..|..........|. ..+..++. .+.++++.|..++... .......++|+.
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred hHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 222222211101110 11111111 1234566666665542 111000134431
Q ss_pred ------HHHHHHHHHhhc----cCCc----hHHHHHHHHHHHhCCCCCccHHHHHHHHHHh-------CCCHH-------
Q 009663 251 ------VTLVCALSAIGH----TGML----QLGKVIHGYVYRNGLDLDSFISNALIDMYGK-------CGSLK------- 302 (529)
Q Consensus 251 ------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~------- 302 (529)
..|...+..... .++. ..+..+|++++...+ .+..+|..++..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 344444432221 1233 367788998888743 367788888887775 78887
Q ss_pred HHHHHHhhcCC---C-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCH--HHHHHHHHHHhCCCcHHHHHHH
Q 009663 303 EARRAFDRNSK---K-RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDG--VTFISLLNACTHGGLVEQGRAY 376 (529)
Q Consensus 303 ~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 376 (529)
+|+.+|++..+ | +...|..++..+.+.|++++|..+|+++.+ ..|+. ..|..++..+.+.|++++|..+
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----SSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-----ccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 89999998764 3 466899999999999999999999999975 34542 4788888888889999999999
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 377 FKLMTKTYRIEP-QIEHYGCLVDL-LGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 377 ~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
|++..+. .| +...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++...
T Consensus 379 ~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 379 FKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9999843 44 33444333322 34689999999999987 4345 68899999999999999999999999999987
Q ss_pred CCCch----hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 453 PNNGG----YGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 453 p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|.++. +|...+......|+.+.+..+.+++.+.-.
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 76655 777778888889999999999998876543
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.1e-16 Score=155.46 Aligned_cols=364 Identities=11% Similarity=0.023 Sum_probs=298.2
Q ss_pred HHHHHHHHHHHHCCCCCCCcchHHHHHHhCcc----CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCCH
Q 009663 95 SSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPD----VLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSR----SGNDI 166 (529)
Q Consensus 95 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~ 166 (529)
..++..++...+.| +...+..+...+.. .+++++|...++...+.| +...+..|...|.. .+ +.
T Consensus 24 ~~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~ 95 (490)
T 2xm6_A 24 NVNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQ-DY 95 (490)
T ss_dssp -CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CH
T ss_pred hHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CH
Confidence 33456666665543 56666667666665 899999999999998875 56788888999998 88 99
Q ss_pred HHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhHHHHHHH
Q 009663 167 GIARKLFDEMSD-RNVVSWTAMISGYTR----VGDIKNAASLFDSMPD-RDVPAWNSVIAGCTQ----NGLFSDAISFFR 236 (529)
Q Consensus 167 ~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 236 (529)
++|.+.|++..+ .+...+..+...|.. .+++++|...|++..+ .++..+..+...|.. .+++++|++.|+
T Consensus 96 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 96 AQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999999876 467788888888888 8899999999998654 367788888888887 789999999999
Q ss_pred HhhhcccCCCCCCHHHHHHHHHHhhc----cCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh----CCCHHHHHHHH
Q 009663 237 RMGMEVSDNIRPNQVTLVCALSAIGH----TGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGK----CGSLKEARRAF 308 (529)
Q Consensus 237 ~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 308 (529)
+.... + +...+..+...+.. .++.++|...|++..+.| +...+..+...|.. .+++++|...|
T Consensus 176 ~a~~~---~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 176 KAAEQ---G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHC---C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 98753 3 56677777777776 899999999999999876 45677778888886 88999999999
Q ss_pred hhcCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCC-----CcHHHHHHHHH
Q 009663 309 DRNSKK-RLTSWNSMINSFAL----HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG-----GLVEQGRAYFK 378 (529)
Q Consensus 309 ~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~ 378 (529)
++..+. +...+..+...|.. .++.++|+.+|++..+ .+ +...+..+...+... +++++|..+|+
T Consensus 247 ~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~---~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE---QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT---TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH---cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 986654 55677888888888 8999999999999976 43 445666677777766 89999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 009663 379 LMTKTYRIEPQIEHYGCLVDLLGRAG---RFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKKLIEI 451 (529)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 451 (529)
+..+. .+...+..+...|...| ++++|.++|++.-...++..+..+...|.. .+++++|...|+++.+.
T Consensus 321 ~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 321 KSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 99864 24567788888888767 789999999988223578889999999988 89999999999999886
Q ss_pred CCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 009663 452 DPNNGGYGIMLANIYGE----LGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 452 ~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 487 (529)
+ ++..+..++.+|.+ .+++++|...+++..+.+.
T Consensus 397 ~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 397 G--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4 68899999999998 8999999999999998874
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=8.5e-16 Score=159.91 Aligned_cols=381 Identities=9% Similarity=0.068 Sum_probs=293.2
Q ss_pred CchhHHHHHHHHHhhcCCChhHHHHHhhcCC-CC-----ChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcch
Q 009663 43 QTNFYAFKLVRFCTLKLSNLTYARFIFDHLT-TP-----NTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFI 116 (529)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-~~-----~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 116 (529)
.+|.--...++.|...| .+.+|.++++.+. .+ +....|.++....+. +..+..+..++.... .
T Consensus 983 ~~PeeVs~~vKaf~~ag-lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~--------d 1051 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTAD-LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNY--------D 1051 (1630)
T ss_pred cCHHHhHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhc--------c
Confidence 45566678889999888 9999999999886 22 234566666666554 556666666655321 1
Q ss_pred HHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCC
Q 009663 117 YPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGD 196 (529)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 196 (529)
...+...+...|.+++|..+|++.. ......+.++ -..+ ++++|.++.++. .+..+|..+..++.+.|+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~-nldrAiE~Aerv--n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIG-NLDRAYEFAERC--NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHh-hHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC
Confidence 3447777888999999999998752 1222223332 2677 899999999977 447789999999999999
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHH
Q 009663 197 IKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYV 276 (529)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 276 (529)
+++|++.|.+. .|...|..++.++.+.|++++|+++|...++. .+++...+.++.+|++.++++....+.
T Consensus 1121 ~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-----~~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-----ARESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 99999999775 67888899999999999999999999987743 344444445888999999888644443
Q ss_pred HHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHH
Q 009663 277 YRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVT 356 (529)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~ 356 (529)
+ .++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.. +..+
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~---------n~~a 1252 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN---------STRT 1252 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC---------CHHH
Confidence 2 245566777999999999999999999985 489999999999999999999999873 4588
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKI 434 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 434 (529)
|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..|. ...|.-+...+.+
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 998899999999999988766542 346778889999999999999999999776 66653 4456556555554
Q ss_pred --cCCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhcCCHHHHHHHH
Q 009663 435 --YGRTDFAEFAVKKLIEIDP-----NNGGYGIMLANIYGELGKWDEVRKVR 479 (529)
Q Consensus 435 --~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (529)
-++..++.+.|..-..+.| .+...|..+...|.+.|+++.|....
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4566777777776666555 57788999999999999999999543
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=6.8e-17 Score=147.88 Aligned_cols=271 Identities=8% Similarity=0.016 Sum_probs=212.3
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC
Q 009663 189 SGYTRVGDIKNAASLFDSMPDRDV----PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG 264 (529)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~ 264 (529)
+-....|++..|+..+++....++ .....+.++|...|+++.|+..++. .-+|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcCCC
Confidence 344567888888888877665433 2445567888889998888875543 23566777888888888888
Q ss_pred CchHHHHHHHHHHHhCCCC-CccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHh
Q 009663 265 MLQLGKVIHGYVYRNGLDL-DSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMM 343 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 343 (529)
+.++|.+.++.+...+..| +...+..+..++...|++++|++.|++ ..+...+..++..+.+.|++++|...|+++.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999888876544 445667777899999999999999998 5677789999999999999999999999997
Q ss_pred hcccCCCCCCHHHH---HHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 009663 344 RCQDHNIRPDGVTF---ISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIE 419 (529)
Q Consensus 344 ~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 419 (529)
+ . .|+.... ...+..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|.+.|++. ...
T Consensus 158 ~---~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 158 D---Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp H---H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred h---h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6 3 3554321 22334455679999999999999975 2457889999999999999999999999997 445
Q ss_pred C-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 009663 420 P-DEVVWGSLLNGCKIYGRTDF-AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVR 479 (529)
Q Consensus 420 p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (529)
| +..++..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-|
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 5 68889999999999999876 67899999999998876654 355666666666544
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=7.7e-18 Score=157.40 Aligned_cols=287 Identities=14% Similarity=0.098 Sum_probs=96.9
Q ss_pred hcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHH
Q 009663 57 LKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMV 136 (529)
Q Consensus 57 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (529)
+.| ++++|.+.++++.+|+ .|..+..++... |++++|++.|.+ .+|..+|..++.++...|++++|..+
T Consensus 15 ~~~-~ld~A~~fae~~~~~~--vWs~La~A~l~~-g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIG-NLDRAYEFAERCNEPA--VWSQLAKAQLQK-GMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc-CHHHHHHHHHhCCChH--HHHHHHHHHHHc-CCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 444 7788888888875553 777888888877 888888888853 34566777888888888888888887
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH
Q 009663 137 HTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWN 216 (529)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 216 (529)
++...+. .+++.+.+.++.+|.+.| +++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg-~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTN-RLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhC-CHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 7666553 344666777777787777 77777666642 55566777777777777777777777666 3566
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYG 296 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (529)
.++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA~---------~~~~Wk~v~~aCv~~~ef~lA--------------------------- 196 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKAN---------STRTWKEVCFACVDGKEFRLA--------------------------- 196 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHT---------CHHHHHHHHHHHHHTTCHHHH---------------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHcC---------CchhHHHHHHHHHHcCcHHHH---------------------------
Confidence 66666666666666666666551 344555555555555555554
Q ss_pred hCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHH
Q 009663 297 KCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRA 375 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 375 (529)
......+. ..+.-...++..|.+.|++++|..+++.... ..+ ....|+-+..++++- ++++..+
T Consensus 197 --------~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~-----le~ah~~~ftel~il~~ky-~p~k~~e 261 (449)
T 1b89_A 197 --------QMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG-----LERAHMGMFTELAILYSKF-KPQKMRE 261 (449)
T ss_dssp --------HHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----STTCCHHHHHHHHHHHHTT-CHHHHHH
T ss_pred --------HHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 33333322 2222233455666666667777666666632 222 234444444444432 2333333
Q ss_pred HHHHhHHhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 376 YFKLMTKTYRIEP------QIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 376 ~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.++...++.+++| +...|..++..|...++++.|....-+-
T Consensus 262 hl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 262 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 3333323224443 3556777778888888888777655443
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=4.3e-15 Score=154.72 Aligned_cols=421 Identities=12% Similarity=0.085 Sum_probs=303.9
Q ss_pred cccccccccHHHHHHHHHHccCcchHHHHHHHHHHhC--CCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHH
Q 009663 4 VTNQLNQTLNQQVLAILERCNHINHLKQLQSFLTTLG--QSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYT 81 (529)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 81 (529)
++...+|-........+...+.+.++..+++...-.+ ++-+....+.|+....+. +........+.....+ ..
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~d---~~ 1053 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNYD---AP 1053 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhcc---HH
Confidence 4455555555566666667788888888888887332 123445666666666555 4555555555554333 33
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 009663 82 AMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSR 161 (529)
Q Consensus 82 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (529)
.+...+... |.+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++..
T Consensus 1054 eIA~Iai~l-glyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1054 DIANIAISN-ELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 355566666 99999999999862 12222233333 677899999888755 257788899999999
Q ss_pred cCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 162 SGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPD--RDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 162 ~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
.| ++++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+ +++...+.++.+|++.+++++...+..
T Consensus 1118 ~G-~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~--- 1191 (1630)
T 1xi4_A 1118 KG-MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN--- 1191 (1630)
T ss_pred CC-CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHh---
Confidence 99 999999999775 6777888899999999999999999977543 333344468999999999885443321
Q ss_pred hcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHH
Q 009663 240 MEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSW 319 (529)
Q Consensus 240 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 319 (529)
.|+...+..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aW 1253 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTW 1253 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHH
Confidence 345566777888999999999999999875 47889999999999999999999877 456789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVD 398 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 398 (529)
..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++... ++.+ +...|+-|..
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Ii--------v~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIV--------VHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh--------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHH
Confidence 988899999999888887665432 355667788888999999999999998776 5555 4566766766
Q ss_pred HHHhc--CChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------cCCCCch
Q 009663 399 LLGRA--GRFEEALEVVKGM-KIEP------DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE------------IDPNNGG 457 (529)
Q Consensus 399 ~~~~~--g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~p~~~~ 457 (529)
+|++- ++..++.++|..- .++| +...|..+...|.+.|+++.|....-+-.. ..+.++.
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~e 1402 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVE 1402 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHH
Confidence 66653 4566666666543 4333 467788888889999999988843322211 1355778
Q ss_pred hHHHHHHHHHhcC---------------CHHHHHHHHH
Q 009663 458 YGIMLANIYGELG---------------KWDEVRKVRK 480 (529)
Q Consensus 458 ~~~~l~~~~~~~g---------------~~~~a~~~~~ 480 (529)
.+...+..|...+ +.+.+.+++.
T Consensus 1403 lyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1403 LYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 8887777777666 6666666665
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.4e-15 Score=152.38 Aligned_cols=400 Identities=10% Similarity=0.043 Sum_probs=274.7
Q ss_pred HccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC--CCChhHHHHHHHHHh-cCCCChHHHH
Q 009663 22 RCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT--TPNTYLYTAMITAYA-SQPAHASSAF 98 (529)
Q Consensus 22 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~-~~~~~~~~a~ 98 (529)
..++.+.+..+++.+.+. .|.+...+..++..+.+.| +++.|..+|++.. .|+...|...+.... .. |+.+.|.
T Consensus 24 ~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~-~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~-~~~~~a~ 100 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAK-NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETK-GKLPSYK 100 (530)
T ss_dssp HSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT-TTSTTHH
T ss_pred HhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-cchhhHH
Confidence 457888999999999876 4667788999999999999 9999999999986 477777877775443 34 7777766
Q ss_pred H----HHHHHHHC-CCCCCCcchHHHHHHhCcc---------CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009663 99 S----LYRDMVRR-GQPQPNQFIYPHVLKSCPD---------VLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGN 164 (529)
Q Consensus 99 ~----~~~~m~~~-~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 164 (529)
+ +|+..... |.-+++...|...+....+ .|+++.|..+|+..++....+....|..........|
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~- 179 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN- 179 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc-
Confidence 5 77777653 4312345667666665433 6889999999999987311111234444333222222
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhh-------CC------CCC--------hhhHHHHHHHHH
Q 009663 165 DIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDS-------MP------DRD--------VPAWNSVIAGCT 223 (529)
Q Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~~~ 223 (529)
...+..++.. +.++++.|..++.. +. .|+ ...|...+....
T Consensus 180 -~~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 180 -IHLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp -HHHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 1122222211 12233334333322 11 111 234554443332
Q ss_pred hC----CCh----hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc-------cCCch-------HHHHHHHHHHHhCC
Q 009663 224 QN----GLF----SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH-------TGMLQ-------LGKVIHGYVYRNGL 281 (529)
Q Consensus 224 ~~----g~~----~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~ 281 (529)
.. ++. +++..+|++.... .+.+...|......+.+ .|+++ +|..++++.++.-.
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 22 232 3777888888743 23356667777666654 68887 89999999886323
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Ch-hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHH
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSK--K-RL-TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVT 356 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~ 356 (529)
+.+...+..++..+.+.|++++|..+|+++.+ + +. ..|...+..+.+.|+.++|..+|++..+ . .| +...
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~--~~~~~~~ 392 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---D--ARTRHHV 392 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---C--TTCCTHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---c--cCCchHH
Confidence 34577888899999999999999999987643 2 33 4788899999999999999999999975 2 23 2333
Q ss_pred HHHHHHH-HhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC--HHHHHHHH
Q 009663 357 FISLLNA-CTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-K---IEPD--EVVWGSLL 429 (529)
Q Consensus 357 ~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~ 429 (529)
|...... +...|++++|..+|+...+.. +.++..|..++..+.+.|+.++|..+|++. . ..|+ ...|...+
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 3332222 335899999999999998652 235889999999999999999999999987 2 2332 45888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
......|+.+.+..++.++.+..|+
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCch
Confidence 8888999999999999999998874
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=1.2e-17 Score=159.12 Aligned_cols=260 Identities=14% Similarity=-0.029 Sum_probs=194.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHH
Q 009663 212 VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNAL 291 (529)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 291 (529)
...+..+...+.+.|++++|+..|+++... .+.+...+..+..++...|++++|...|+++.+..+ .+..++..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 139 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMAL 139 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 345666677777777777777777777643 233456666777777777777777777777776653 245667777
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCh-------------hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-CCCHHHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRL-------------TSWNSMINSFALHGQSENSICVFEEMMRCQDHNI-RPDGVTF 357 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~p~~~~~ 357 (529)
..+|...|++++|...|+++.+.+. ..+..+...+...|++++|+.+++++.+ ... .++..++
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 216 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH---QNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH---HSCSSCCHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH---hCcCccCHHHH
Confidence 7777777777777777776543211 1334457888899999999999999976 321 1257888
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY 435 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 435 (529)
..+...+...|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|+++ ...| +..++..+..++...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 899999999999999999999998651 336889999999999999999999999988 4455 588899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 436 GRTDFAEFAVKKLIEIDPN------------NGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
|++++|...+++++++.|+ +..++..++.++...|+.+.+..+.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999998876 367899999999999999998887754
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.3e-17 Score=154.25 Aligned_cols=381 Identities=10% Similarity=0.061 Sum_probs=177.6
Q ss_pred HHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCC
Q 009663 13 NQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPA 92 (529)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 92 (529)
...+-.++..+++.+++.+..+.+ +++.+++.|..++.+.| ++++|.+.|.+. +|...|..++..+... |
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g-~~~eAIdsfika--~D~~~y~~V~~~ae~~-g 75 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG-MVKEAIDSYIKA--DDPSSYMEVVQAANTS-G 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcC-CHHHHHHHHHcC--CCHHHHHHHHHHHHhC-C
Confidence 344567788899999999988887 34469999999999999 999999999765 5677899999999988 9
Q ss_pred ChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 009663 93 HASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKL 172 (529)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~ 172 (529)
++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...| .+++|..+
T Consensus 76 ~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g-~yeeA~~~ 144 (449)
T 1b89_A 76 NWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEK-MYDAAKLL 144 (449)
T ss_dssp ------------------------------------CHHHHTTTTT-------CC-----------------CTTTHHHH
T ss_pred CHHHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 999999988777664 4568889999999999999999988884 367789999999999999 99999999
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHH
Q 009663 173 FDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT 252 (529)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~ 252 (529)
|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...|+.
T Consensus 145 Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~-- 209 (449)
T 1b89_A 145 YNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADE-- 209 (449)
T ss_dssp HHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHH--
T ss_pred HHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhh--
Confidence 9988 58999999999999999999999999 48999999999999999999996655543 234443
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC--CCHHHHHHHHhhcCC--------CChhHHHHH
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC--GSLKEARRAFDRNSK--------KRLTSWNSM 322 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~~~~~l 322 (529)
...++..|.+.|+++++..+++...... +-....|+-|.-+|++- ++..+.++.|..-.. .+...|.-+
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4568889999999999999999988665 44566788887777764 456666666654322 234579999
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR 402 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (529)
...|...++++.|..+.-+- ....-+...|--++. +..+.+--.+...-.... .| ..++.|+.++..
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h-----~~~a~~~~~f~~~~~---kv~n~elyYkai~fyl~~---~p--~~l~~ll~~l~~ 355 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNH-----PTDAWKEGQFKDIIT---KVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSP 355 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHS-----TTTTCCHHHHHHHHH---HCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGG
T ss_pred HHHHHhhchHHHHHHHHHhC-----ChhhhhhHHHHHHHh---chhHHHHHHHHHHHHHhc---CH--HHHHHHHHHHHh
Confidence 99999999999988744322 122223444443332 333333222222222222 23 235556666666
Q ss_pred cCChHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHHcCCHHHHHH
Q 009663 403 AGRFEEALEVVKGMKIEP-------------DEVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 403 ~g~~~~A~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
.=+...+.++|+..+.-| +..+=.++-..|....+++.-..
T Consensus 356 ~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~ 409 (449)
T 1b89_A 356 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRT 409 (449)
T ss_dssp GCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 666666666666653222 23333344455566666554433
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.7e-16 Score=155.28 Aligned_cols=279 Identities=10% Similarity=-0.029 Sum_probs=148.5
Q ss_pred CHHHHHHHHhhCCC--C-ChhhHHHHHHH---HHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHh----hccC
Q 009663 196 DIKNAASLFDSMPD--R-DVPAWNSVIAG---CTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAI----GHTG 264 (529)
Q Consensus 196 ~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~----~~~~ 264 (529)
++++|+..|++..+ | ++..+..+..+ +...++.++|++.+++.... .| +...+..+...+ ...+
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-----~p~~~~~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-----NPDNQYLKVLLALKLHKMREEGE 227 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH-----CSSCHHHHHHHHHHHHHCC----
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc-----CCcchHHHHHHHHHHHHHHhhhh
Confidence 45555555555331 2 33333333332 33445566666666655432 23 233333333222 2334
Q ss_pred CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH-------------
Q 009663 265 MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFAL------------- 328 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~------------- 328 (529)
+.++|..++++.....+. +..++..+...|...|++++|...|++..+ .+..++..+..+|..
T Consensus 228 ~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 556666666666655432 444555666666666666666666665432 233344444443322
Q ss_pred ------cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHH
Q 009663 329 ------HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE----HYGCLVD 398 (529)
Q Consensus 329 ------~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~ 398 (529)
.+..+.|...+++..+ .. +.+...+..+...+...|++++|...|+++.+. .|+.. .+..+..
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~---~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADE---AN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGN 379 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH---HC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhh---cC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHH
Confidence 2335677788877764 21 223345677888888999999999999988743 34322 2223322
Q ss_pred -HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 009663 399 -LLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 399 -~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
.+...|+.++|+..|++. .+.|+...... ....+..++++.++.+|+++.++..++.+|...|++++|+
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 234678899999999887 66666433322 2345567788888899999999999999999999999999
Q ss_pred HHHHHHhhCCCccCCcccEE
Q 009663 477 KVRKMLKDRNAYKTPGCSWI 496 (529)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~ 496 (529)
+.+++..+.+...+...+|+
T Consensus 451 ~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --------------------
T ss_pred HHHHHHHhcCCCCCcHhhcC
Confidence 99999999887666666664
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3.2e-17 Score=156.25 Aligned_cols=279 Identities=13% Similarity=0.054 Sum_probs=201.7
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHH-HHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHH
Q 009663 195 GDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAIS-FFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIH 273 (529)
Q Consensus 195 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 273 (529)
+.++.+...|+.+...+.. ++...|++++|++ .|++...........+...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445555555555443332 3445688999998 8887653211011113455778888899999999999999
Q ss_pred HHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 274 GYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
+.+.+..+ .+..++..+..++...|++++|...|+++. ..+..++..+...+...|++++|...++++.. ..
T Consensus 88 ~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~- 162 (368)
T 1fch_A 88 EAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR---YT- 162 (368)
T ss_dssp HHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TS-
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC-
Confidence 99998864 367788899999999999999999998754 34667999999999999999999999999976 22
Q ss_pred CCCH-HHHHH---------------HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 351 RPDG-VTFIS---------------LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 351 ~p~~-~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
|+. ..+.. .+..+...|++++|...++++.+...-.++..++..+...|.+.|++++|...++
T Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 241 (368)
T 1fch_A 163 -PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241 (368)
T ss_dssp -TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 322 11110 1333347899999999999998652222247889999999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 415 GM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 415 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
++ ...| +..++..++..+...|++++|+..++++.+..|+++.++..++.+|.+.|++++|...++++.+..
T Consensus 242 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 242 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88 4344 688999999999999999999999999999999999999999999999999999999999997654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=3.6e-17 Score=153.03 Aligned_cols=258 Identities=11% Similarity=-0.033 Sum_probs=181.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHH
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALID 293 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 293 (529)
.+..+...+...|++++|..+|+++... .+.+...+..+..++...|++++|...++.+.+..+ .+..++..+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 3444455555555555555555555432 122344444555555555555555555555555432 23445555555
Q ss_pred HHHhCCCHHHHHHHHhhcCCC---ChhHHHHH--------------HH-HHHHcCChhHHHHHHHHHhhcccCCCCCCHH
Q 009663 294 MYGKCGSLKEARRAFDRNSKK---RLTSWNSM--------------IN-SFALHGQSENSICVFEEMMRCQDHNIRPDGV 355 (529)
Q Consensus 294 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~ 355 (529)
.|...|++++|...|+++.+. +...+..+ .. .+...|++++|...++++.+ . .+.+..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~ 173 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE---M-NPNDAQ 173 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH---H-STTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh---h-CCCCHH
Confidence 556666666666555543321 11122221 22 36677889999999999875 2 233677
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGC 432 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 432 (529)
.+..+...+...|++++|...++++.+. .| +...+..+...|...|++++|...++++ ...| +...+..+...+
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8888999999999999999999999864 34 5788999999999999999999999987 3344 688899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPN------------NGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
...|++++|.+.++++.+..|+ ++.++..++.++.+.|++++|..++++..
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999998 68899999999999999999999987554
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.9e-16 Score=144.87 Aligned_cols=248 Identities=13% Similarity=0.072 Sum_probs=203.6
Q ss_pred HHHHHhCCChhHHHHHHHHhhhcccCCCCCCH--HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 009663 219 IAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ--VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYG 296 (529)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (529)
++-....|+++.|+..++... ...|+. .....+..++...|+++.|...++. .-+|+..++..+...+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~-----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK-----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC-----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc-----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHc
Confidence 455667899999999998875 446654 3556678899999999999986654 23456778888999999
Q ss_pred hCCCHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 297 KCGSLKEARRAFDRNS----KK-RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
..|+.++|++.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|+++
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHTTCHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999863 23 455778888999999999999999875 356778889999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 372 QGRAYFKLMTKTYRIEPQIEH---YGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
+|...++++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.+..++.+.|++++|+..++
T Consensus 148 ~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999865 465321 122334455569999999999998 334578899999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCCHHH-HHHHHHHHhhCCC
Q 009663 447 KLIEIDPNNGGYGIMLANIYGELGKWDE-VRKVRKMLKDRNA 487 (529)
Q Consensus 447 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 487 (529)
++++.+|+++.++..++.++...|+.++ +.++++++.+...
T Consensus 225 ~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 225 EALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999976 5789988876654
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.9e-16 Score=150.81 Aligned_cols=232 Identities=13% Similarity=0.038 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 009663 249 NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINS 325 (529)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 325 (529)
+...+..+...+.+.|++++|..+|+.+.+..+ .+..++..+..+|...|++++|+..|++.. ..+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 344577888899999999999999999999865 367789999999999999999999999765 3456799999999
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCC-----------HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPD-----------GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG 394 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 394 (529)
|...|++++|+..|+++.+ ..|+ ...+..+...+...|++++|...++++.+...-.++...+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK-----QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH-----HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHccccHHHHHHHHHHHHH-----hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 9999999999999999976 2232 22334457788999999999999999987632222588999
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 395 CLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
.+...|...|++++|.+.|+++ ...| +..+|..+..++...|++++|+..++++++..|+++.++..++.+|.+.|++
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999998 3344 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 009663 473 DEVRKVRKMLKDRN 486 (529)
Q Consensus 473 ~~a~~~~~~~~~~~ 486 (529)
++|...++++.+..
T Consensus 298 ~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 298 REAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999997654
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=2.4e-15 Score=148.53 Aligned_cols=380 Identities=9% Similarity=-0.050 Sum_probs=187.7
Q ss_pred chhHHHHHHHHHhhcCCChhHHHHHhhcCC------------CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHC----
Q 009663 44 TNFYAFKLVRFCTLKLSNLTYARFIFDHLT------------TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRR---- 107 (529)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~---- 107 (529)
....|+.|-..+...| +.++|.+.|++.. .....+|+.+...+... |++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhHhc
Confidence 3455666666666666 7777776665431 12344666666666666 7777777776665432
Q ss_pred -CCCC-CCcchHHHHHHhCc--cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH---HhcCCCHHHHHHHHhhCCC--
Q 009663 108 -GQPQ-PNQFIYPHVLKSCP--DVLESRGTKMVHTQIVKSGFEQYPVVETALVNSY---SRSGNDIGIARKLFDEMSD-- 178 (529)
Q Consensus 108 -~~~~-~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~g~~~~~A~~~~~~~~~-- 178 (529)
+... ....++.....++. ..+++++|.+.|++.++..+ .++..+..+..++ ...+ +.++|.+.+++..+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~-~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWP-PSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSC-CCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhcC
Confidence 1001 11233443333332 23456667777776666542 2334444333332 2334 45555555555432
Q ss_pred C-ChhhHHHHHHHHHh----cCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC-
Q 009663 179 R-NVVSWTAMISGYTR----VGDIKNAASLFDSMP---DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN- 249 (529)
Q Consensus 179 ~-~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~- 249 (529)
| +..++..+...+.. .|+.++|.+.+++.. ..+..++..+...|...|++++|+..+++.... .|+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~ 280 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-----IPNN 280 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCCh
Confidence 2 33344433333332 344555655555432 234445555666666666666666666665532 332
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 009663 250 QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSF 326 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 326 (529)
..++..+..++...+.. ..... ...........+.++.|...|++.. ..+..++..+...|
T Consensus 281 ~~~~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Confidence 23333333322111000 00000 0000000111223566777776543 33456888899999
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHH--HHHHHHH-HHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGV--TFISLLN-ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRA 403 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 403 (529)
...|++++|+..|++..+ ....|... .+..+.. .....|++++|+..|++..+ +.|+.......
T Consensus 345 ~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~------- 411 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM------- 411 (472)
T ss_dssp HHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH-------
T ss_pred HHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH-------
Confidence 999999999999999876 44333221 1222222 24578999999999999883 46654332222
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 404 GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 404 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
...+.++++.. ...| +..+|..+...+...|++++|++.|+++++.+|.+|.+...++
T Consensus 412 --~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 --KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 23334444443 2234 6788999999999999999999999999999998887776654
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.6e-15 Score=135.11 Aligned_cols=218 Identities=12% Similarity=0.010 Sum_probs=160.3
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC------C----hhHHHH
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK------R----LTSWNS 321 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~----~~~~~~ 321 (529)
.+..+...+...|++++|..+++.+.+.. .+..++..+..++...|++++|...|++..+. + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555555554 44555555666666666666666666554321 1 356777
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH
Q 009663 322 MINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLL 400 (529)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 400 (529)
+...+...|++++|...|+++.+ ..|+. ..+...|++++|...++.+... .| +...+..+...+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLT-----EHRTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-----HCCCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh-----cCchh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHH
Confidence 88888888888888888888865 33443 2345567888999999888743 45 467788888899
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 009663 401 GRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
...|++++|...++++ ...| +..++..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|...
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999887 3333 6788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCC
Q 009663 479 RKMLKDRN 486 (529)
Q Consensus 479 ~~~~~~~~ 486 (529)
+++..+..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99887654
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.8e-15 Score=141.35 Aligned_cols=148 Identities=9% Similarity=0.088 Sum_probs=75.1
Q ss_pred hCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 297 KCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
..|++++|...++++. ..+...+..+...+...|++++|...++++.+ . .+.+...+..+...+...|++++|
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE---L-RPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH---h-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 3344444444444322 11233444455555555555555555555543 1 112344455555555555666666
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHcCCHH
Q 009663 374 RAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-------------DEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~ 439 (529)
...++++.+.. +.+...+..+...|...|++++|.+.++++ ...| +...|..+..++...|+++
T Consensus 226 ~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 226 LDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 66665555331 123455555556666666666666665554 1122 2455556666666666666
Q ss_pred HHHHHHHHHHh
Q 009663 440 FAEFAVKKLIE 450 (529)
Q Consensus 440 ~A~~~~~~~~~ 450 (529)
+|..+++++++
T Consensus 304 ~A~~~~~~~l~ 314 (327)
T 3cv0_A 304 LVELTYAQNVE 314 (327)
T ss_dssp HHHHHTTCCSH
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=3.5e-15 Score=130.41 Aligned_cols=194 Identities=16% Similarity=0.056 Sum_probs=152.9
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHH
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTF 357 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~ 357 (529)
+++...+..+...+.+.|++++|...|++..+ .+...|..+..++.+.|++++|+..+++..+ ..| +...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----~~P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA-----RTPRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHH
Confidence 35666777888888889999999999887643 3456888888899999999999999999875 234 45677
Q ss_pred HHHHHHHhCC-----------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 009663 358 ISLLNACTHG-----------GLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVV 424 (529)
Q Consensus 358 ~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 424 (529)
..+..++... |++++|...+++..+. .| +...+..+..+|...|++++|+..|++. .+..+...
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Confidence 7888888888 9999999999999854 56 5788999999999999999999999987 22278899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
+..+..++...|++++|+..|+++++.+|+++.++..++.++.+.|++++|+..+++..
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.8e-15 Score=134.02 Aligned_cols=236 Identities=12% Similarity=0.021 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC--C----cc
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL--D----SF 286 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~ 286 (529)
..|..+...+...|++++|+..|++.... . .+...+..+..++...|++++|...++.+.+..+.. + ..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL---H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh---h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 45667777788888888888888887755 3 666777777777888888888888888777654321 1 46
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHh
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACT 365 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~ 365 (529)
++..+..+|...|++++|...|++....+.. ...+...|++++|...++++.. ..| +...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAY-----VNPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHH-----cCcchHHHHHHHHHHHH
Confidence 7777888888888888888888765432211 2456677888999999999865 233 4456778888899
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
..|++++|...++++.+.. +.+...+..+...|...|++++|...+++. ...| +...+..+...+...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999998642 335788999999999999999999999988 3344 58889999999999999999999
Q ss_pred HHHHHHhcC------CCCchhHHHHHHH
Q 009663 444 AVKKLIEID------PNNGGYGIMLANI 465 (529)
Q Consensus 444 ~~~~~~~~~------p~~~~~~~~l~~~ 465 (529)
.++++.+.. |++..++..+..+
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999988 8777777666543
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=156.88 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCL 396 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 396 (529)
.+|+++|.+|++.|+.++|.++|.+|.++...|+.||..||++||.+|++.|++++|.++|++|.+. |+.||..+|+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHH
Confidence 4899999999999999999999988765434688999999999999999999999999999999876 999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHhC---CCCCCHHHHHHHHHHHHH
Q 009663 397 VDLLGRAGRF-EEALEVVKGM---KIEPDEVVWGSLLNGCKI 434 (529)
Q Consensus 397 ~~~~~~~g~~-~~A~~~~~~~---~~~p~~~~~~~l~~~~~~ 434 (529)
|.++++.|+. ++|.++|++| |+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999874 7888999999 889999999988865443
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=159.76 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH
Q 009663 182 VSWTAMISGYTRVGDIKNAASLFDSMP-------DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV 254 (529)
Q Consensus 182 ~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~ 254 (529)
.+||++|++|++.|++++|.++|++|. .||+.|||+||.+|++.|++++|.++|++|... |+.||..||+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---G~~PDvvTYn 204 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA---GLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCcHHHHH
Confidence 579999999999999999999997653 589999999999999999999999999999888 9999999999
Q ss_pred HHHHHhhccCCc-hHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHH
Q 009663 255 CALSAIGHTGML-QLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRA 307 (529)
Q Consensus 255 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (529)
++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999985 78899999999999999999999998877765444444444
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=8.9e-15 Score=133.05 Aligned_cols=244 Identities=11% Similarity=-0.086 Sum_probs=182.3
Q ss_pred hCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHH
Q 009663 224 QNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE 303 (529)
Q Consensus 224 ~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 303 (529)
..|++++|+..|+++........+.+...+..+..++...|++++|...++++.+..+. +..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 45778888888888874300001124556777777888888888888888888887643 56778888888999999999
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 009663 304 ARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLM 380 (529)
Q Consensus 304 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 380 (529)
|...|++..+ .+...+..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...++..
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ-----DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9998887643 3566888899999999999999999999875 3455444444555556679999999999888
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 381 TKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 381 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.... +++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...+...|++++|...++++.+.+|+
T Consensus 171 ~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 171 FEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 7642 3344444 4777788888889999999887 43342 577888999999999999999999999999997
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHH
Q 009663 455 NGGYGIMLANIYGELGKWDEVRKVR 479 (529)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (529)
+...+ +.++...|++++|++.+
T Consensus 248 ~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHH---HHHHHHHHHHHHC----
T ss_pred hHHHH---HHHHHHHHHHHhhHHHH
Confidence 75544 56778889999998776
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=3.4e-14 Score=129.02 Aligned_cols=244 Identities=13% Similarity=-0.014 Sum_probs=158.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCc--cHHHH
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDS--FISNA 290 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 290 (529)
.+......+...|++++|+..|++..+. .| +...+..+..++...|++++|...++.+.+.+..++. .++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK-----KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT-----TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 3444555666666777777766666532 22 2235555566666667777777776666663322221 23666
Q ss_pred HHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhC
Q 009663 291 LIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTH 366 (529)
Q Consensus 291 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~ 366 (529)
+..++...|++++|...|++.. ..+...|..+...|...|++++|+..|++..+ ..| +...+..+...+..
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR-----PTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC-----SSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh-----cCCCcHHHHHHHHHHHHH
Confidence 7777777777777777776543 23445777777788888888888888887753 234 44555555523333
Q ss_pred CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGR---FEEALEVVKGM----KIEPD------EVVWGSLLNGC 432 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~ 432 (529)
.+++++|...|+++.+. .| +...+..+..++...|+ +++|...+++. ...|+ ..+|..+...+
T Consensus 155 ~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp TTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 45888888888888754 44 46677777777777777 66677777665 11233 25677788889
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
...|++++|.+.++++.+++|+++.+...+.......+
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999999999888888776654443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=6.9e-14 Score=136.47 Aligned_cols=376 Identities=9% Similarity=-0.024 Sum_probs=234.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCc---hHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009663 83 MITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLES---RGTKMVHTQIVKSGFEQYPVVETALVNSY 159 (529)
Q Consensus 83 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (529)
+...+.+. |++++|+++|++..+.| +...+..+...+...|+. ++|...|+...+. ++..+..+...+
T Consensus 9 la~~~~~~-g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKR-GDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 44555667 89999999999998876 334455566666677777 8999999888754 444555566644
Q ss_pred HhcC----CCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhcCCHHHH---HHHHhhCC-CCChhhHHHHHHHHHhCCChhH
Q 009663 160 SRSG----NDIGIARKLFDEMSDR-NVVSWTAMISGYTRVGDIKNA---ASLFDSMP-DRDVPAWNSVIAGCTQNGLFSD 230 (529)
Q Consensus 160 ~~~g----~~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A---~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 230 (529)
...+ .++++|.+.|++...+ +...+..+...|...+..+.+ .+.+.... ..++..+..+...|...+.+++
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 4433 1678899888887763 455777788777776554433 33333332 2356677788888888886665
Q ss_pred HHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC---CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC----CCHHH
Q 009663 231 AISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG---MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC----GSLKE 303 (529)
Q Consensus 231 A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 303 (529)
+.+......+... ...|+ .+..+...+...| +.++|...|+...+.|.. +...+..+...|... +++++
T Consensus 160 ~~~~a~~~~~~a~-~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 160 HLDDVERICKAAL-NTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GHHHHHHHHHHHT-TTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CHHHHHHHHHHHH-cCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHH
Confidence 5554333322211 22344 6677777777788 888999999999888753 444445677777654 68999
Q ss_pred HHHHHhhcCCCChhHHHHHHHH-H--HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC-----cHHHHHH
Q 009663 304 ARRAFDRNSKKRLTSWNSMINS-F--ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG-----LVEQGRA 375 (529)
Q Consensus 304 A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~ 375 (529)
|...|++....+...+..+... + ...+++++|+.+|++..+ .| +...+..+...|. .| ++++|..
T Consensus 236 A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 236 AQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---AD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999988773355577777776 4 467899999999998876 55 4556666666665 44 8899999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 009663 376 YFKLMTKTYRIEPQIEHYGCLVDLLGR----AGRFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKK 447 (529)
Q Consensus 376 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 447 (529)
+|++.. .-++..+..|...|.. ..++++|..+|++.--.-+......+...|.. ..+.++|..+|++
T Consensus 309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 998775 2356677777777766 34889999999887212344455566666653 4588999999999
Q ss_pred HHhcCCCCchhHHHHHHHH--HhcCCHHHHHHHHHHHhhC
Q 009663 448 LIEIDPNNGGYGIMLANIY--GELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 448 ~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 485 (529)
+.+.++. .....+.... ...++..+|..+.++..+.
T Consensus 384 A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 384 AKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 8887653 3333343333 3335677788887776554
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.2e-12 Score=117.18 Aligned_cols=201 Identities=13% Similarity=0.012 Sum_probs=110.0
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALH 329 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 329 (529)
+..+...+...|++++|...++.+.+... .+..++..+..+|...|++++|.+.|+++. ..+...+..+...|...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 33344444444444445444444444332 133344445555555555555555554432 12334555555666666
Q ss_pred CChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 009663 330 GQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 407 (529)
|++++|.++++++.. .+..| +...+..+...+...|++++|...++++.+. .| +...+..+...|...|+++
T Consensus 119 g~~~~A~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQ---DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp TCHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHh---CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHH
Confidence 666666666666643 22333 3344555566666666666666666666543 23 3555666666666666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 408 EALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 408 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
+|...++++ ...| +...+..+...+...|++++|.+.++++.+..|+++....
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 666666665 3233 4555566666666667777777777777666666554443
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=3.4e-13 Score=127.48 Aligned_cols=244 Identities=9% Similarity=0.000 Sum_probs=195.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCC-chHHHHHHHHHHHhCCCCCccHHH
Q 009663 212 VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGM-LQLGKVIHGYVYRNGLDLDSFISN 289 (529)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 289 (529)
...|..+...+.+.|++++|+..|+++... .| +...|..+..++...|+ +++|+..++++++..+. +..+|.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l-----~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~ 170 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL-----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHH
Confidence 456777888888889999999999988743 45 45677778888888886 99999999998888754 667888
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHh
Q 009663 290 ALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACT 365 (529)
Q Consensus 290 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~ 365 (529)
.+..++...|++++|+..|+++. ..+...|..+..++...|++++|+..|+++.+ ..| +...|+.+..++.
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~-----l~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK-----EDVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH-----HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHH
Confidence 88888999999999999998765 34667899999999999999999999999976 234 5677888888888
Q ss_pred C-CCcHHHH-----HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHc
Q 009663 366 H-GGLVEQG-----RAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAG--RFEEALEVVKGMKIEP-DEVVWGSLLNGCKIY 435 (529)
Q Consensus 366 ~-~~~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~ 435 (529)
. .|..++| +..++++.+. .| +...|..+..++...| ++++|++.+.++...| +...+..++..+.+.
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 7 5654666 4788888754 56 5778888888898888 6899999988874455 577888888888876
Q ss_pred C---------CHHHHHHHHHHH-HhcCCCCchhHHHHHHHHHhc
Q 009663 436 G---------RTDFAEFAVKKL-IEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 436 g---------~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 469 (529)
| ..++|+++++++ .+.+|.....|..++..+...
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 4 258999999999 899999889998887766543
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=1.4e-12 Score=118.47 Aligned_cols=217 Identities=12% Similarity=-0.053 Sum_probs=115.8
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh----CCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH--
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGK----CGSLKEARRAFDRNSKK-RLTSWNSMINSFAL-- 328 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~-- 328 (529)
+...+...|++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+. +...+..+...|..
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~ 88 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQ 88 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCC
Confidence 3333344444444444444444321 22333444444444 45555555555443222 33344555555555
Q ss_pred --cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 009663 329 --HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH----GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR 402 (529)
Q Consensus 329 --~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (529)
.+++++|+..|++..+ .+ +...+..+...+.. .+++++|..+|++..+. + +...+..+...|..
T Consensus 89 ~~~~~~~~A~~~~~~a~~---~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACD---LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDA 158 (273)
T ss_dssp SSCCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHH---cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHc
Confidence 5566666666665554 32 34455555555555 56666666666665542 2 34455555555555
Q ss_pred ----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cC
Q 009663 403 ----AGRFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE----LG 470 (529)
Q Consensus 403 ----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g 470 (529)
.+++++|..+|++.--..+...+..+...+.. .+++++|+..++++.+.+| +..+..++.+|.+ .|
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~ 236 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTR 236 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCccc
Confidence 66666666666655111244555566666666 6666666666666666544 4556666666666 66
Q ss_pred CHHHHHHHHHHHhhCCC
Q 009663 471 KWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~~~ 487 (529)
++++|...+++..+.|.
T Consensus 237 ~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 237 NEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CSTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 66667666666665543
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=2.9e-14 Score=137.92 Aligned_cols=266 Identities=14% Similarity=0.005 Sum_probs=175.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC-H----HHHHHHHHHhhccCCchHHHHHHHHHHHh----C-CCCC
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN-Q----VTLVCALSAIGHTGMLQLGKVIHGYVYRN----G-LDLD 284 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~ 284 (529)
+..+...+...|++++|+..|+++... .|+ . ..+..+..++...|++++|...++++.+. + ....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 334555666677777777777766543 222 1 34555666666677777777776666543 1 1122
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCC-----------------hhHHHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSKK---------RLTSWNSMINSFALHGQ-----------------SENSICV 338 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~a~~~ 338 (529)
..++..+...|...|++++|...|++.... ...++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 345666777777777777777777654321 12367777777888888 7888887
Q ss_pred HHHHhhccc-CCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHH
Q 009663 339 FEEMMRCQD-HNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEV 412 (529)
Q Consensus 339 ~~~m~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 412 (529)
+++..++.. .+..| ....+..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 777654111 11111 2245667777888888999888888887643111111 23677888888899999998888
Q ss_pred HHhC-CC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHHHHH
Q 009663 413 VKGM-KI---EP----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN------NGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 413 ~~~~-~~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
+++. .. .. ...++..+...+...|++++|...++++++..+. ...++..++.+|.+.|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 8776 11 11 1456777888888999999999999988885432 244778888899999999999999
Q ss_pred HHHHhhC
Q 009663 479 RKMLKDR 485 (529)
Q Consensus 479 ~~~~~~~ 485 (529)
+++..+.
T Consensus 366 ~~~al~~ 372 (411)
T 4a1s_A 366 AEQHLQL 372 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888644
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=3.5e-13 Score=122.24 Aligned_cols=228 Identities=9% Similarity=-0.023 Sum_probs=186.5
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCh----hHHHHHHHH
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRL----TSWNSMINS 325 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~ 325 (529)
.+......+...|++++|...++.+.+..+. +..++..+..+|...|++++|+..|++..+ .+. ..|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455667788999999999999999987653 556888899999999999999999987654 222 258899999
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAG 404 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 404 (529)
+...|++++|+..|++..+ . .+.+...+..+...+...|++++|...+++..+ ..| +...+..+...+...+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~---~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVD---R-DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH---H-STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHh---c-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999976 2 223457888999999999999999999999884 355 5777777773444556
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhcCC
Q 009663 405 RFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR---TDFAEFAVKKLIEID---PNN-----GGYGIMLANIYGELGK 471 (529)
Q Consensus 405 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~ 471 (529)
++++|.+.|+++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..++..++.+|.+.|+
T Consensus 157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 999999999988 4455 47788888888888888 888999999999865 532 2578889999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 009663 472 WDEVRKVRKMLKDRNA 487 (529)
Q Consensus 472 ~~~a~~~~~~~~~~~~ 487 (529)
+++|...++++.+...
T Consensus 237 ~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 237 KVKADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9999999999987653
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.1e-13 Score=123.09 Aligned_cols=194 Identities=11% Similarity=0.074 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLN 362 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~ 362 (529)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+ . .+.+...+..+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~la~ 99 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE---L-DSSAATAYYGAGN 99 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---c-CCcchHHHHHHHH
Confidence 3444455555555555555555554432 2334555556666666666666666666553 2 1224455555666
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHH
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~ 440 (529)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ... .+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666665431 224555666666666666666666666665 222 245566666666666666666
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
|+..++++.+..|+++.++..++.+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666666666666666666666666666666666666666554
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=6.7e-13 Score=116.42 Aligned_cols=194 Identities=13% Similarity=0.039 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNA 363 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~ 363 (529)
++..+...+...|++++|...|+++. ..+...+..+...+...|++++|...++++.+ . .+.+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~-~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS---I-KPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH---h-CCCChHHHHHHHHH
Confidence 34444555555555555555554432 12334555566666666666666666666654 2 12244556666666
Q ss_pred HhCC-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 009663 364 CTHG-GLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 364 ~~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 439 (529)
+... |++++|...++++.+ .+..|+ ...+..+...+...|++++|...++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 6677 777777777777664 123332 456666667777777777777777665 2233 4666667777777777777
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 440 FAEFAVKKLIEIDP-NNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 440 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+|...++++.+..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777777 67777777777777777777777777776544
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.2e-13 Score=122.87 Aligned_cols=211 Identities=13% Similarity=0.039 Sum_probs=145.5
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 009663 251 VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFA 327 (529)
Q Consensus 251 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 327 (529)
..+..+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...|+++. ..+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 3344445555556666666666666555432 244556666666677777777777766543 234557777788888
Q ss_pred HcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 009663 328 LHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 328 ~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 407 (529)
..|++++|...++++.+ . .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 103 ~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALR---A-GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HTTCHHHHHHHHHHHHH---H-TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCH
T ss_pred HhccHHHHHHHHHHHHH---h-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888875 2 23356678888888899999999999999988542 336778888999999999999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 408 EALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 408 ~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
+|...++++ ... .+..++..+...+...|++++|...++++.+..|+++..+..+......
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 999999887 333 4678899999999999999999999999999999998888777655443
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=4.4e-13 Score=120.08 Aligned_cols=198 Identities=8% Similarity=-0.063 Sum_probs=172.2
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLL 361 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~ 361 (529)
...+..+...+...|++++|...|+++. ..+...+..+...+...|++++|.+.++++.+ .. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA---SD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HC-cCcHHHHHHHH
Confidence 4567788899999999999999998764 34566899999999999999999999999976 32 23667888889
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRT 438 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 438 (529)
..+...|++++|..+++++.+ .+..| +...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 999999999999999999985 23456 4678888999999999999999999987 3334 688899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 439 DFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 439 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
++|...++++.+..|++...+..++.++...|++++|.++++++.+...
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999987643
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=1.9e-13 Score=131.88 Aligned_cols=271 Identities=15% Similarity=0.083 Sum_probs=122.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccC-CCCC-CHHHH
Q 009663 183 SWTAMISGYTRVGDIKNAASLFDSMPD--R-D----VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD-NIRP-NQVTL 253 (529)
Q Consensus 183 ~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~p-~~~~~ 253 (529)
.+......+...|++++|...|++..+ | + ..+|..+...|...|++++|...+++....... +..| ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344455555666666666666655432 1 2 134555556666666666666666665432100 0011 12234
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhCCC-CC----ccHHHHHHHHHHhCCC--------------------HHHHHHHH
Q 009663 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLD-LD----SFISNALIDMYGKCGS--------------------LKEARRAF 308 (529)
Q Consensus 254 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 308 (529)
..+...+...|++++|...++++.+.... ++ ..++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 44445555556666666555555432110 00 2244445555555555 55555554
Q ss_pred hhcCC-----CC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC--CHHHHHHHHHHHhCCCcHHHHHHHH
Q 009663 309 DRNSK-----KR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP--DGVTFISLLNACTHGGLVEQGRAYF 377 (529)
Q Consensus 309 ~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~ 377 (529)
++... .+ ..++..+...|...|++++|+..+++..+..+....+ ...++..+...+...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 43211 01 1244445555555555555555555554421111000 0113444444555555555555555
Q ss_pred HHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 378 KLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGM-K---IEPD----EVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 378 ~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
++..+...-.++ ..++..+...|...|++++|.+.+++. . ..++ ..++..+...+...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 554421100011 234444555555555555555555443 0 0111 334444444555555555555555
Q ss_pred HHHHhcCC
Q 009663 446 KKLIEIDP 453 (529)
Q Consensus 446 ~~~~~~~p 453 (529)
+++.++.+
T Consensus 331 ~~al~~~~ 338 (406)
T 3sf4_A 331 EKHLEISR 338 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=2e-12 Score=117.31 Aligned_cols=225 Identities=12% Similarity=-0.027 Sum_probs=179.7
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc----cCCchHHHHHHHHHHHhCCCCCcc
Q 009663 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH----TGMLQLGKVIHGYVYRNGLDLDSF 286 (529)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 286 (529)
++.++..+...|...|++++|+..|++... +.+...+..+...+.. .+++++|...|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 456677777888888888888888888763 2234566667777777 888888888888888775 566
Q ss_pred HHHHHHHHHHh----CCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHhhcccCCCCCCHHHH
Q 009663 287 ISNALIDMYGK----CGSLKEARRAFDRNSKK-RLTSWNSMINSFAL----HGQSENSICVFEEMMRCQDHNIRPDGVTF 357 (529)
Q Consensus 287 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~p~~~~~ 357 (529)
.+..+...|.. .+++++|+..|++..+. +...+..+...|.. .+++++|+..|++..+ .+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~---~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh---cC---cHHHH
Confidence 77778888888 88999999888876543 55678888888888 8999999999999886 54 45566
Q ss_pred HHHHHHHhC----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCCHHHHHHH
Q 009663 358 ISLLNACTH----GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR----AGRFEEALEVVKGM-KIEPDEVVWGSL 428 (529)
Q Consensus 358 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l 428 (529)
..+...+.. .+++++|...|++..+. .+...+..+...|.. .+++++|...|++. ...| ...+..+
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l 224 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 677777776 89999999999998854 256778888899999 99999999999987 3333 7778888
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCCC
Q 009663 429 LNGCKI----YGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 429 ~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 455 (529)
...+.. .+++++|.+.++++.+.+|++
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 888888 899999999999999998853
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=3e-12 Score=112.21 Aligned_cols=206 Identities=11% Similarity=-0.018 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 009663 250 QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSF 326 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 326 (529)
...+..+...+...|++++|...++.+.+..+ .+..++..+..+|...|++++|...|++.. ..+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33444555555555666666666655555432 234455666666666677777776666543 23455677777888
Q ss_pred HHc-CChhHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 009663 327 ALH-GQSENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA 403 (529)
Q Consensus 327 ~~~-~~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 403 (529)
... |++++|...++++.+ .+..|+ ...+..+..++...|++++|...++++.+. .| +...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA---DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT---STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHc---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHc
Confidence 888 888888888888864 333443 566777888888899999999999988754 34 577888899999999
Q ss_pred CChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 404 GRFEEALEVVKGM-KIE--PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 404 g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
|++++|...++++ ... .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999887 323 4677777777788899999999999999999999887766544
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=2.6e-13 Score=128.27 Aligned_cols=227 Identities=10% Similarity=0.060 Sum_probs=192.8
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCC-HHHHHHHHhhcCC---CChhHHHHHHHH
Q 009663 250 QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS-LKEARRAFDRNSK---KRLTSWNSMINS 325 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 325 (529)
...+..+..++...|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|++... .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345677777888999999999999999998754 67788999999999997 9999999998653 456799999999
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHh-
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGR- 402 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~- 402 (529)
+...|++++|+..|+++.+ +.| +...|..+..++...|++++|+..++++.+. .| +...|+.+..++.+
T Consensus 176 ~~~~g~~~eAl~~~~kal~-----ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN-----QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHH-----hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHh
Confidence 9999999999999999976 334 6678888999999999999999999999965 56 68899999999999
Q ss_pred cCChHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC---
Q 009663 403 AGRFEEA-----LEVVKGM-KIEP-DEVVWGSLLNGCKIYG--RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG--- 470 (529)
Q Consensus 403 ~g~~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--- 470 (529)
.|..++| ++.+++. .+.| +...|..+...+...| ++++|++.+.++ +.+|+++.++..++.+|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccc
Confidence 6665777 4777776 5556 5788888888888888 689999999998 889999999999999999875
Q ss_pred ------CHHHHHHHHHHH-hhCC
Q 009663 471 ------KWDEVRKVRKML-KDRN 486 (529)
Q Consensus 471 ------~~~~a~~~~~~~-~~~~ 486 (529)
..++|+.+++++ .+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=4.2e-13 Score=130.94 Aligned_cols=348 Identities=10% Similarity=-0.006 Sum_probs=235.4
Q ss_pred HHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCH---HHHHHHHhhCCCCChhhHHHHHHHHHhcC
Q 009663 119 HVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDI---GIARKLFDEMSDRNVVSWTAMISGYTRVG 195 (529)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 195 (529)
.+...+.+.|++++|.++|+...+.| +...+..|..+|...| +. ++|.+.|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTR-DPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 35566778899999999999998887 3445556667777778 77 89999999988777777888877666655
Q ss_pred -----CHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHH
Q 009663 196 -----DIKNAASLFDSMPDR-DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLG 269 (529)
Q Consensus 196 -----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 269 (529)
+.++|...|++..++ +...+..|...|...+..+++.+.++.+......+. ......+...+...+.++.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccC
Confidence 788999999886554 456888889999888775554444443332211122 33555666667777766665
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHhCC---CHHHHHHHHhhcCCCC---hhHHHHHHHHHHHc----CChhHHHHHH
Q 009663 270 KVIHGYVYRNGLDLDSFISNALIDMYGKCG---SLKEARRAFDRNSKKR---LTSWNSMINSFALH----GQSENSICVF 339 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~----~~~~~a~~~~ 339 (529)
........+.-...++..+..|..+|...| +.++|+..|++..+.+ ...+..+...|... +++++|+.+|
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 555444444333344558888999999999 8999999998765433 33446777777655 6899999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHH-H--hCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----ChHHHHH
Q 009663 340 EEMMRCQDHNIRPDGVTFISLLNA-C--THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG-----RFEEALE 411 (529)
Q Consensus 340 ~~m~~~~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~ 411 (529)
++. . +-+...+..+... + ...+++++|..+|++..+. | ++..+..|...|. .| ++++|.+
T Consensus 241 ~~a-----a--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 241 EKI-----A--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHH-----G--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHH-----c--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 997 3 2345556666555 3 4589999999999998854 3 6677778888887 55 9999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 009663 412 VVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE----LGKWDEVRKVRKMLK 483 (529)
Q Consensus 412 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 483 (529)
+|++.- .-+...+..+...|.. ..++++|..+|+++.+. .++.....|+.+|.. ..+.++|...+++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999988 6678888888877776 34999999999998774 467888899998875 458999999999999
Q ss_pred hCCCc
Q 009663 484 DRNAY 488 (529)
Q Consensus 484 ~~~~~ 488 (529)
+.|..
T Consensus 386 ~~g~~ 390 (452)
T 3e4b_A 386 AQDTP 390 (452)
T ss_dssp TTCCH
T ss_pred HCCCH
Confidence 88863
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=5.9e-14 Score=131.41 Aligned_cols=267 Identities=17% Similarity=0.043 Sum_probs=187.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC-----HHHHHHHHHHhhccCCchHHHHHHHHHHHh----CCC-CC
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN-----QVTLVCALSAIGHTGMLQLGKVIHGYVYRN----GLD-LD 284 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 284 (529)
+......+...|++++|+..|+++... .|+ ...+..+...+...|++++|...++++.+. +.. ..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 344456677777777777777777643 222 245566666777777777777777765543 111 12
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hhHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSK-----KR----LTSWNSMINSFALHGQ--------------------SENS 335 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a 335 (529)
..++..+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 44566777788888888888888766432 11 2267777888888888 8888
Q ss_pred HHHHHHHhhccc-CCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHH
Q 009663 336 ICVFEEMMRCQD-HNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEA 409 (529)
Q Consensus 336 ~~~~~~m~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 409 (529)
...+++...... .+..| ....+..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888877654211 11111 2345777778888899999999999887643111111 34778888999999999999
Q ss_pred HHHHHhC-C---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCHHHH
Q 009663 410 LEVVKGM-K---IEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN------GGYGIMLANIYGELGKWDEV 475 (529)
Q Consensus 410 ~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 475 (529)
...+++. . ..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999876 1 1122 5577788888999999999999999998865432 44788899999999999999
Q ss_pred HHHHHHHhhCC
Q 009663 476 RKVRKMLKDRN 486 (529)
Q Consensus 476 ~~~~~~~~~~~ 486 (529)
...+++..+..
T Consensus 323 ~~~~~~a~~~~ 333 (338)
T 3ro2_A 323 MHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 58
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=4.5e-13 Score=116.93 Aligned_cols=191 Identities=13% Similarity=0.042 Sum_probs=95.1
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHH
Q 009663 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISN 289 (529)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 289 (529)
++..+..+...+.+.|++++|+..|++... ..| +...+..+..++...|++++|...++++++..+. +...+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~ 77 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK-----ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYM 77 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 444566666667777777777777776652 233 3455556666666666666666666666665432 344555
Q ss_pred HHHHHHHhC-----------CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH
Q 009663 290 ALIDMYGKC-----------GSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV 355 (529)
Q Consensus 290 ~l~~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~ 355 (529)
.+..++... |++++|+..|++..+ .+...|..+..++...|++++|+..|++..+ .. .+..
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~--~~~~ 152 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA---LE--DTPE 152 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC--CCHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cc--cchH
Confidence 555565555 555555555544321 2233444455555555555555555555544 22 3444
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
.+..+..++...|++++|...|+++.+. .| +...+..+...+.+.|++++|.+.|++
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444555555555555555555555432 23 344444445555555555555544443
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=6e-13 Score=128.30 Aligned_cols=279 Identities=14% Similarity=0.036 Sum_probs=176.2
Q ss_pred CcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHH
Q 009663 113 NQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQY---PVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMIS 189 (529)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~ 189 (529)
....+......+...|++++|...++.+.+.+.... ..++..+..++...| ++++|...+++...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~----------- 75 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLT----------- 75 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH-----------
Confidence 344445555566677777777777777776643211 245666677777777 77777776655321
Q ss_pred HHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccC-C-CCCCHHHHHHHHHHhhccCC
Q 009663 190 GYTRVGDIKNAASLFDSMPDR--DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD-N-IRPNQVTLVCALSAIGHTGM 265 (529)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~p~~~~~~~ll~~~~~~~~ 265 (529)
+......+ ...++..+...|...|++++|+..+++....... + ......++..+...+...|+
T Consensus 76 -------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 76 -------------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 11111111 1234555556666666666666666555421000 0 00012345555566666666
Q ss_pred --------------------chHHHHHHHHHHHh----CC-CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC
Q 009663 266 --------------------LQLGKVIHGYVYRN----GL-DLDSFISNALIDMYGKCGSLKEARRAFDRNSK-----KR 315 (529)
Q Consensus 266 --------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 315 (529)
++.|...+....+. +. .....++..+...|...|++++|...|++..+ ++
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence 66776666665432 11 11233567778888888999988888876542 11
Q ss_pred ----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC-CCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC
Q 009663 316 ----LTSWNSMINSFALHGQSENSICVFEEMMRCQDH-NIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ 389 (529)
Q Consensus 316 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 389 (529)
..++..+...|...|++++|...+++....... +..+. ..++..+...+...|++++|...+++..+...-.++
T Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 237888899999999999999999998752111 11111 456778888999999999999999988753211122
Q ss_pred ----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 390 ----IEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 390 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
..++..+...|...|++++|.+.+++.
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888999999999999999998875
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=5.5e-13 Score=121.09 Aligned_cols=237 Identities=7% Similarity=-0.148 Sum_probs=167.5
Q ss_pred cCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCc
Q 009663 194 VGDIKNAASLFDSMPDR-------DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGML 266 (529)
Q Consensus 194 ~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 266 (529)
.|++++|+..|+++.+. +..+|..+...+...|++++|+..|+++... .+.+...+..+..++...|++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHccCH
Confidence 46677777777665432 3456777888888888888888888887743 233567777888888888888
Q ss_pred hHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 009663 267 QLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRLTSWNSMINSFALHGQSENSICVFEEMMR 344 (529)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 344 (529)
++|...++.+.+..+. +..++..+..+|...|++++|...|+++.+ ++.......+..+...|++++|...+.+...
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888888887543 567788888888888999999888887643 3333333444455667899999999987764
Q ss_pred cccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 009663 345 CQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KI 418 (529)
Q Consensus 345 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 418 (529)
. .+++...+. ++..+...++.++|...++.+.. ..|+ ...+..+...|.+.|++++|...|++. ..
T Consensus 173 ---~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 ---K-SDKEQWGWN-IVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp ---H-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---c-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 233333443 66667777888889888888763 2332 577888999999999999999999988 65
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 419 EPDEVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 419 ~p~~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
.|+. +.....++...|++++|++.+
T Consensus 245 ~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6643 223355667788888888776
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=2.3e-12 Score=109.19 Aligned_cols=165 Identities=17% Similarity=0.116 Sum_probs=139.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhH
Q 009663 315 RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEH 392 (529)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 392 (529)
+...|..+...|...|++++|+..|++..+ ..| +...+..+..++...|++++|...+..+... .| +...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK-----ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHH
Confidence 345788888888889999999999998875 234 5567888888889999999999999988754 34 5677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
+..+...+...++++.|...+.+. ...| +...+..+...+...|++++|++.|+++++.+|+++.++..++.+|.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 778888889999999999999887 3344 67888889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhCCC
Q 009663 471 KWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~~~ 487 (529)
++++|+..+++..+...
T Consensus 156 ~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEE 172 (184)
T ss_dssp CHHHHHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHhCCc
Confidence 99999999999887653
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.9e-13 Score=134.29 Aligned_cols=191 Identities=10% Similarity=0.004 Sum_probs=157.6
Q ss_pred CccHHHHHHHHHHhCCCH-HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHH
Q 009663 284 DSFISNALIDMYGKCGSL-KEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFIS 359 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ 359 (529)
+...+..+..+|...|++ ++|+..|++.. ..+...|..+..+|...|++++|+..|++..+ ..|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT-----HCKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----TCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCHHHHHH
Confidence 444555556666666666 66666665543 23455778888888888999999999999865 4577788888
Q ss_pred HHHHHhCC---------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC
Q 009663 360 LLNACTHG---------GLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA--------GRFEEALEVVKGM-KIEP 420 (529)
Q Consensus 360 l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p 420 (529)
+...+... |++++|...++++.+. .| +...|..+..+|... |++++|++.|++. .+.|
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 99999999 9999999999999864 45 588899999999998 9999999999988 4455
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 421 ----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 421 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
+...|..+..++...|++++|.+.|+++.+++|+++.++..++.++...|++++|+..+.++
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999999999999999999999999999999999765443
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=3e-10 Score=114.63 Aligned_cols=416 Identities=9% Similarity=0.005 Sum_probs=285.5
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCC---hHHHHHHHHHH
Q 009663 31 QLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAH---ASSAFSLYRDM 104 (529)
Q Consensus 31 ~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~---~~~a~~~~~~m 104 (529)
..++...... +-|...+..++..+.+.+ .++.|+.+|+++. +.....|...+..-.+. ++ .+.+..+|++.
T Consensus 53 ~~lE~~l~~n-p~d~~~W~~yi~~~~~~~-~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~-~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 53 GKLNDMIEEQ-PTDIFLYVKLLKHHVSLK-QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK-MEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-CCcchHHHHHHHHHHH
Confidence 3444444443 568999999999999988 9999999999886 45667788888888887 88 99999999999
Q ss_pred HHCCCCCCCcchHHHHHHhCccCCCc--------hHHHHHHHHHHHh-CC-CC-chhHHHHHHHHHHh---------cCC
Q 009663 105 VRRGQPQPNQFIYPHVLKSCPDVLES--------RGTKMVHTQIVKS-GF-EQ-YPVVETALVNSYSR---------SGN 164 (529)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~-~~~~~~~l~~~~~~---------~g~ 164 (529)
+.....+|+...|..-+....+.++. +...++|+.++.. |. .+ +...|...+..... .+
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~- 208 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ- 208 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH-
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh-
Confidence 98752138888887777655444443 3345778777653 55 44 34678877776542 34
Q ss_pred CHHHHHHHHhhCCC-CCh---hhHH---HHHHHHH----------hcCCHHHHHHHHhh-------CCC-----------
Q 009663 165 DIGIARKLFDEMSD-RNV---VSWT---AMISGYT----------RVGDIKNAASLFDS-------MPD----------- 209 (529)
Q Consensus 165 ~~~~A~~~~~~~~~-~~~---~~~~---~ll~~~~----------~~g~~~~A~~~~~~-------~~~----------- 209 (529)
+++.+.++|+.... |.. .+|. .+...+. ...+++.|...+.+ +..
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 57889999999876 321 2332 2221110 01123334444432 111
Q ss_pred ---C--C------hhhHHHHHHHHHhCC-------ChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHH-
Q 009663 210 ---R--D------VPAWNSVIAGCTQNG-------LFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGK- 270 (529)
Q Consensus 210 ---~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~- 270 (529)
| + ...|...+..--..+ ..+.+..+|++.... .+-....|...+.-+...|+.+.|.
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~----~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH----VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 0 0 123555444333322 123456778887753 4446667777777777889999996
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC-------------CC------------hhHHHHHHHH
Q 009663 271 VIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK-------------KR------------LTSWNSMINS 325 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~ 325 (529)
.+++...... +.+...+-..+....+.|++++|.++|+++.. |. ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999998754 34555677788888999999999999987653 21 1268888888
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC-CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH-GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG 404 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 404 (529)
..+.|+.+.|..+|.++.+ ....+....|...+..-.+ .++.+.|..+|+...+.+ +.+...+...++.....|
T Consensus 444 erR~~~l~~AR~vf~~A~~---~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRR---LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHH---TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCC
Confidence 8889999999999999976 3111123334333322223 356999999999999763 335667778888888999
Q ss_pred ChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 405 RFEEALEVVKGM-KIEP----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 405 ~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++.+-.
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 999999999997 3334 3567888888888999999999999999999997654443
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=7.3e-11 Score=119.12 Aligned_cols=213 Identities=8% Similarity=-0.008 Sum_probs=137.9
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHH-HHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 304 ARRAFDRNSK---KRLTSWNSMINSFALHGQSENSI-CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 304 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
+..+|++... .....|...+..+...|+.++|. .+|++... .++.+...+...+......|+++.|..+|+.
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~----~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ----CIPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4445555432 24557777777777788888886 88888763 2334555566667777777888888888888
Q ss_pred hHHhcC--------CCCC------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CC--CCCHHHHHHHHHHHHHc-
Q 009663 380 MTKTYR--------IEPQ------------IEHYGCLVDLLGRAGRFEEALEVVKGM-KI--EPDEVVWGSLLNGCKIY- 435 (529)
Q Consensus 380 ~~~~~~--------~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~p~~~~~~~l~~~~~~~- 435 (529)
+.+... -.|+ ..+|...+....+.|..+.|..+|.++ .. ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 775310 0131 235777777777788888888888877 22 12233443333333333
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc-CCcccEEEECCeEEEEeeCCCCCCC
Q 009663 436 GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYK-TPGCSWIEVDKQVHQFHSLDKTHPR 514 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (529)
++.+.|..+|+++++..|+++..+...+......|+.+.|..+|++.......+ ....-| ..|+.-...||.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw-------~~~~~fE~~~G~ 556 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIF-------QKVIFFESKVGS 556 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHH-------HHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHH-------HHHHHHHHHcCC
Confidence 447888888888888888888887777787778888888888888887665421 111112 244555567788
Q ss_pred hHHHHHHHHHHHh
Q 009663 515 TEEIYDALESMVA 527 (529)
Q Consensus 515 ~~~~~~~~~~~~~ 527 (529)
.+++.++.+++.+
T Consensus 557 ~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 557 LNSVRTLEKRFFE 569 (679)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=9e-13 Score=127.43 Aligned_cols=202 Identities=14% Similarity=0.043 Sum_probs=132.2
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhC-----CCCCccHHHHHHHHHHhCCC-----------------HHHHHHHHh
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRNG-----LDLDSFISNALIDMYGKCGS-----------------LKEARRAFD 309 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 309 (529)
.+..+...+...|++++|...++++.+.. ......++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 33444444455555555555554443321 01122345555666666666 666666655
Q ss_pred hcCC-------C--ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC--CHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009663 310 RNSK-------K--RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP--DGVTFISLLNACTHGGLVEQGRAYFK 378 (529)
Q Consensus 310 ~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~ 378 (529)
+..+ + ....+..+...|...|++++|+..+++..+.......+ ....+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4321 1 12367777888888899999888888876521111111 12367778888999999999999998
Q ss_pred HhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 379 LMTKTYRIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI---EP----DEVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 379 ~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
+......-.. ....+..+...|...|++++|...+++. .+ .+ ...++..+...+...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8765321111 1567788899999999999999999877 11 11 24577788889999999999999999
Q ss_pred HHHhcCC
Q 009663 447 KLIEIDP 453 (529)
Q Consensus 447 ~~~~~~p 453 (529)
++.++.+
T Consensus 368 ~al~~~~ 374 (411)
T 4a1s_A 368 QHLQLAX 374 (411)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9999876
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=1.8e-12 Score=124.10 Aligned_cols=226 Identities=11% Similarity=-0.019 Sum_probs=138.5
Q ss_pred HHhhccCCchHHHHHHHHHHHh----CCCC-CccHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC-----hhHHHHH
Q 009663 258 SAIGHTGMLQLGKVIHGYVYRN----GLDL-DSFISNALIDMYGKCGSLKEARRAFDRNSK-----KR-----LTSWNSM 322 (529)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 322 (529)
..+...|++++|...++++.+. +..+ ...++..+..+|...|++++|...+++..+ .+ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566666666666666543 1111 224556666666677777666666654321 11 1256667
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCC-CCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHh---cCCCC-ChhHHHHH
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHN-IRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKT---YRIEP-QIEHYGCL 396 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l 396 (529)
...|...|++++|+..+++..+..+.. ..+ ...++..+..++...|++++|...+++..+. .+..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 777777777777777777765421111 111 1135666777777888888888888776641 11213 35567777
Q ss_pred HHHHHhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KI-----EPD-EVVWGSLLNGCKIYGR---TDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
...|.+.|++++|...+++. .+ .|. ...+..+...+...|+ +++|+..+++. ...|....++..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 88888888888888887765 11 121 2234556666777777 66666666665 22233455777788888
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 009663 467 GELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~~~ 484 (529)
...|++++|...+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888887754
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=4e-13 Score=124.39 Aligned_cols=241 Identities=10% Similarity=0.080 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccC----CCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHh------CC-
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD----NIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN------GL- 281 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 281 (529)
.++..+...+...|++++|+.+|+++...... ..+.....+..+..++...|++++|...++++.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666666666677777777777666531000 01112233444455555555555555555554432 11
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC---CCCC-CHHHH
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDH---NIRP-DGVTF 357 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~p-~~~~~ 357 (529)
+.... ++..+...|...|++++|...++++.+.... +..| ....+
T Consensus 108 ~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 11122 4444445555555555555555554431000 1112 23345
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCC
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTY-----RIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-K---------IEPD 421 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~ 421 (529)
..+...+...|++++|..+++++.+.. +..| ...++..+...|...|++++|.+.++++ . ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 556666666677777766666665320 1012 2445666666677777777776666655 1 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 422 -------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 422 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
...+..+...+...+.+.++...++++....|....++..++.+|.+.|++++|..++++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222233344555666677777777777777778888888888888888888888877754
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=2.4e-12 Score=120.32 Aligned_cols=240 Identities=15% Similarity=0.075 Sum_probs=147.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhccc-CCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCC-CC----cc
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVS-DNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLD-LD----SF 286 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 286 (529)
.+..+...|...|++++|++.+++...... .+..| ....+..+...+...|++++|...+++..+.... ++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 344555555555555555555554332100 01111 1234444555555666666666666555432111 01 22
Q ss_pred HHHHHHHHHHhCCC--------------------HHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChhHHHH
Q 009663 287 ISNALIDMYGKCGS--------------------LKEARRAFDRNSK-------K--RLTSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 287 ~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~ 337 (529)
++..+...|...|+ +++|...+++... + ....+..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55556666666666 6666666654321 1 12367777888888899999998
Q ss_pred HHHHHhhcccCCCCC--CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHH
Q 009663 338 VFEEMMRCQDHNIRP--DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALE 411 (529)
Q Consensus 338 ~~~~m~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 411 (529)
.+++..+.......+ ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888876521111111 1236777788888899999999999887643111111 5577888889999999999999
Q ss_pred HHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 412 VVKGM-KI---EPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 412 ~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
.+++. .. ..+ ..++..+...+...|++++|...++++.++.+
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 98876 11 112 45677888899999999999999999998765
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=7.7e-12 Score=105.98 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=135.5
Q ss_pred CccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHH
Q 009663 284 DSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISL 360 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l 360 (529)
+..+|..+...|...|++++|+..|++.. ..+..+|..+..+|...|++++|+..+..... . .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---L-DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---c-CchhHHHHHHH
Confidence 45677778888888888888888887654 34566888888888999999999999988864 2 22345666777
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 437 (529)
...+...++++.+...+.+..+. .| +...+..+...|.+.|++++|++.|++. ...| +..+|..+..++.+.|+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 77888899999999999998854 44 5778889999999999999999999987 4455 68889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 009663 438 TDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~ 456 (529)
+++|++.|+++++++|+++
T Consensus 157 ~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCCccCH
Confidence 9999999999999998654
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=1.7e-11 Score=103.73 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.|..+...+...|++++|...++++.+ ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a 83 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYD----ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCC----TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH----hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 455666677777777777777777743 122355667777777778888888888888877541 23567777888
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 009663 398 DLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEV 475 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 475 (529)
..+...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|+++.++..++.++...|++++|
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888877 22 346778888888889999999999999999999998889999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 009663 476 RKVRKMLKDRNA 487 (529)
Q Consensus 476 ~~~~~~~~~~~~ 487 (529)
...++++.+...
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999988876543
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=1.8e-10 Score=106.34 Aligned_cols=217 Identities=10% Similarity=0.014 Sum_probs=140.1
Q ss_pred hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhh-------ccCCc-------hHHHHHHHHHHHh-CCCCCccHHHHHHH
Q 009663 229 SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIG-------HTGML-------QLGKVIHGYVYRN-GLDLDSFISNALID 293 (529)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 293 (529)
++|...|++.... .+.+...|..+...+. ..|++ ++|..+|++.++. .+ -+...|..++.
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 5677777777642 2334445555555443 34665 7777777777763 32 24456777777
Q ss_pred HHHhCCCHHHHHHHHhhcCCC---Chh-HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHH-hCCC
Q 009663 294 MYGKCGSLKEARRAFDRNSKK---RLT-SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNAC-THGG 368 (529)
Q Consensus 294 ~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~-~~~~ 368 (529)
.+.+.|++++|..+|++..+. +.. .|..++..+.+.|++++|..+|++..+ .. +++...|....... ...|
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~-p~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DA-RTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---ST-TCCTHHHHHHHHHHHHTSC
T ss_pred HHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cC-CCCHHHHHHHHHHHHHHcC
Confidence 777777777777777765432 233 677777777777888888888887764 22 22334444333222 2357
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHH
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-K---IEP--DEVVWGSLLNGCKIYGRTDFAE 442 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~ 442 (529)
++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++....+.|+.+.|.
T Consensus 184 ~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 184 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888777542 224667777777777778888888887776 2 244 3566777777777778888888
Q ss_pred HHHHHHHhcCCCCc
Q 009663 443 FAVKKLIEIDPNNG 456 (529)
Q Consensus 443 ~~~~~~~~~~p~~~ 456 (529)
.+++++.+..|++.
T Consensus 262 ~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 262 KVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHccccc
Confidence 88888877777644
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=2.9e-10 Score=108.15 Aligned_cols=265 Identities=10% Similarity=-0.008 Sum_probs=161.3
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhcccCCCCCCH----HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC-C----ccHH
Q 009663 218 VIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ----VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL-D----SFIS 288 (529)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~ 288 (529)
....+...|++++|...+++.... ....+. ..+..+...+...|+++.|...+++..+..... + ..++
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT---CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344556677777777777776543 111111 134444555666777777777777665432111 1 1224
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC----------CC-hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHH
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSK----------KR-LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVT 356 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~ 356 (529)
..+...+...|++++|...+++... +. ...+..+...+...|++++|...+++........-.+ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5566677778888887777765321 11 1245566777788888888888888776521111111 2345
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG-----CLVDLLGRAGRFEEALEVVKGM-KIEPD-----EVVW 425 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~ 425 (529)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|..++++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66677777788888888888887764311111111121 2334467888888888888877 22221 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPN------NGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
..+...+...|++++|...++++....+. ...++..++.++...|+.++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66677788888888888888888764321 1236666777888888888888888877654
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=5.8e-12 Score=128.68 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHH
Q 009663 316 LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHY 393 (529)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~ 393 (529)
..+|+.+...|.+.|++++|++.|++..+ +.| +...+..+..++.+.|++++|+..|+++.+. .| +...|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~-----l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~ 80 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE-----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence 34777888888888888888888888865 334 4567888888888889999999999888754 56 47788
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
..+..+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|++.|+++++++|+++.++..++.+|...|+
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 88889999999999999998887 5556 577888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 009663 472 WDEVRKVRKMLKD 484 (529)
Q Consensus 472 ~~~a~~~~~~~~~ 484 (529)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887754
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=1.6e-11 Score=117.42 Aligned_cols=234 Identities=10% Similarity=0.005 Sum_probs=170.4
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhcccCCCC--C-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC------CccHH
Q 009663 218 VIAGCTQNGLFSDAISFFRRMGMEVSDNIR--P-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL------DSFIS 288 (529)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 288 (529)
....+...|++++|+..|++...... ... + ...++..+..++...|+++.|...+.+..+..... ...++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLI-FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGG-GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 55667778888888888888763210 111 1 23456677777888888888888888877542211 13467
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC-----CCh----hHHHHHHHHHHHcCChhHHHHHHHHHhhcccC-CCCC-CHHHH
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSK-----KRL----TSWNSMINSFALHGQSENSICVFEEMMRCQDH-NIRP-DGVTF 357 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~p-~~~~~ 357 (529)
+.+..+|...|++++|...|++..+ .+. .++..+..+|...|++++|+..+++..+.... +..| ...++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 7788889999999999988876542 111 37888899999999999999999988752111 3323 35668
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhc---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHH
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTY---RIEPQIEHYGCLVDLLGRAGR---FEEALEVVKGMKIEPD-EVVWGSLLN 430 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~ 430 (529)
..+...+...|++++|...+++..+.. +-+.....+..+...|...|+ +++|+.++++.+..|+ ...+..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 888899999999999999999877431 111123345678888899999 9999999999864553 456777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 009663 431 GCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
.|...|++++|...++++.++.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=6.7e-11 Score=109.26 Aligned_cols=213 Identities=10% Similarity=0.033 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHHhCCCCCccHHHHHHHHHH-------hCCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 009663 267 QLGKVIHGYVYRNGLDLDSFISNALIDMYG-------KCGSL-------KEARRAFDRNSK---K-RLTSWNSMINSFAL 328 (529)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 328 (529)
++|..+|+++++..+ .+...|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 678889998888653 36667777777765 35886 899999987654 2 45589999999999
Q ss_pred cCChhHHHHHHHHHhhcccCCCCCCH-H-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH-hcC
Q 009663 329 HGQSENSICVFEEMMRCQDHNIRPDG-V-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLG-RAG 404 (529)
Q Consensus 329 ~~~~~~a~~~~~~m~~~~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g 404 (529)
.|++++|..+|+++.+ +.|+. . .|..+...+.+.|++++|..+|+++.+. .| +...|........ ..|
T Consensus 112 ~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHT-----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHh-----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999975 45543 3 7888888899999999999999999843 34 4555554444322 379
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCCHHHHHHH
Q 009663 405 RFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEI---DPN-NGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 405 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
++++|..+|++. ...| +...|..++..+.+.|++++|..+|+++++. .|+ ...++..++..+.+.|+.++|..+
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999988 3334 6888999999999999999999999999995 453 667888899999999999999999
Q ss_pred HHHHhhCCCc
Q 009663 479 RKMLKDRNAY 488 (529)
Q Consensus 479 ~~~~~~~~~~ 488 (529)
++++.+....
T Consensus 264 ~~~a~~~~p~ 273 (308)
T 2ond_A 264 EKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHccc
Confidence 9999877654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=3.8e-10 Score=107.58 Aligned_cols=232 Identities=9% Similarity=0.009 Sum_probs=127.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC----HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCC------CCcc
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN----QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLD------LDSF 286 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~ 286 (529)
.....+...|++++|+..|++...... ..++ ..++..+..++...|+++.|...+.++.+.... ....
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELP--FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 345566778888888888888763210 1122 335666666777778888887777776653211 0133
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC-CCCCCHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSK-----KR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDH-NIRPDGVT 356 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~p~~~~ 356 (529)
+++.+..+|...|++++|...|++..+ .+ ..++..+..+|...|++++|+..+++..+.... +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 555666777777777777776654332 11 125555666666666666666666665431111 22222344
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ---IEHYGCLVDLLGRAGR---FEEALEVVKGMKIEPD-EVVWGSLL 429 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~ 429 (529)
+..+...+.+.|++++|...+++..+...-.++ ...+..+...|...|+ +.+|+.++++.+..|+ ...+..+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 343 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 555666666666666666666665543211111 2234444445555555 5556666655432222 23344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 009663 430 NGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~ 450 (529)
..|...|++++|...++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 555556666666666555554
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=2e-11 Score=119.91 Aligned_cols=210 Identities=9% Similarity=-0.022 Sum_probs=158.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCc-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLES-RGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIAR 170 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~ 170 (529)
+.+++++..++...... +.+...+..+...+...|++ ++|.+.++++++.. +.+...|..+..+|...| ++++|.
T Consensus 82 ~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g-~~~~A~ 157 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKG-DVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHH
T ss_pred HHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHH
Confidence 34667777787766653 55778888888888999999 99999999998875 336778888999999999 899999
Q ss_pred HHHhhCCC--CChhhHHHHHHHHHhc---------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC--------CCh
Q 009663 171 KLFDEMSD--RNVVSWTAMISGYTRV---------GDIKNAASLFDSMPD---RDVPAWNSVIAGCTQN--------GLF 228 (529)
Q Consensus 171 ~~~~~~~~--~~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--------g~~ 228 (529)
+.|++..+ |+...+..+...+... |++++|+..|++..+ .+...|..+..+|... |++
T Consensus 158 ~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 158 TCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99988765 6666777777777777 888888888877542 3566777777777777 778
Q ss_pred hHHHHHHHHhhhcccCCCCC----CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHH
Q 009663 229 SDAISFFRRMGMEVSDNIRP----NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEA 304 (529)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (529)
++|++.|++.... .| +...+..+..++...|++++|...|+++.+..+. +..++..+..++...|++++|
T Consensus 238 ~~A~~~~~~al~~-----~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 238 QQALSAYAQAEKV-----DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHH-----CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877643 33 5667777777777778888888888777776543 445666677777777777777
Q ss_pred HHHHhhc
Q 009663 305 RRAFDRN 311 (529)
Q Consensus 305 ~~~~~~~ 311 (529)
.+.+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 7766554
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=6.5e-12 Score=116.16 Aligned_cols=243 Identities=12% Similarity=0.047 Sum_probs=148.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc----CC
Q 009663 181 VVSWTAMISGYTRVGDIKNAASLFDSMPD--------R---DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS----DN 245 (529)
Q Consensus 181 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~ 245 (529)
..++..+...+...|++++|...|+++.+ . ...++..+...|...|++++|...+++...... ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46788899999999999999999998754 2 245688899999999999999999999975310 11
Q ss_pred CCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhC------CCC-CccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhH
Q 009663 246 IRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNG------LDL-DSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTS 318 (529)
Q Consensus 246 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 318 (529)
.+.....+..+...+...|++++|...++++.+.. ..| ...++..+...+...|++++|...|+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--------- 177 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ--------- 177 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH---------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH---------
Confidence 23345567788888999999999999998887641 111 22344555555555566555555554
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcccC---CCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc------CCCC
Q 009663 319 WNSMINSFALHGQSENSICVFEEMMRCQDH---NIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTY------RIEP 388 (529)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p 388 (529)
++.+.... +..| ...++..+...+...|++++|...++++.+.. ...+
T Consensus 178 ----------------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 178 ----------------------RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp ----------------------HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ----------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 33321000 1112 12345555555666666666666666555310 0111
Q ss_pred C-------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 389 Q-------IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 389 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
. ...+..+...+...+.+.++...++.. ...| +..++..+..+|...|++++|.+.+++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 112222333344455566666666666 2334 4667888999999999999999999999988764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=8e-11 Score=103.50 Aligned_cols=186 Identities=10% Similarity=-0.117 Sum_probs=87.2
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSK----KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISL 360 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l 360 (529)
..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+ ..| +...+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l 82 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-----KNYNLANAYIGK 82 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-----hCcchHHHHHHH
Confidence 4444455555555555555555554321 3333444455555555555555555555543 222 23344445
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-Ch-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHH
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QI-------EHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD---EVVWGSL 428 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l 428 (529)
..++...|++++|...+++..+. .| +. ..|..+...+...|++++|.+.|++. ...|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 55555555555555555555432 22 22 23444444445555555555555444 33343 2333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
..++... +...++++..+.+.+...+... .....|.+++|+..+++..+..
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 3333222 2233344444443332222222 1223344589999998887653
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=1.2e-10 Score=102.34 Aligned_cols=205 Identities=13% Similarity=0.072 Sum_probs=160.4
Q ss_pred CCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHH
Q 009663 247 RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMI 323 (529)
Q Consensus 247 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 323 (529)
..|+..+......+...|++++|...|+.+.+...+++...+..+..++...|++++|+..|++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3456788888889999999999999999999988656777777799999999999999999998653 3455899999
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCC-H-------HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC---hhH
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPD-G-------VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ---IEH 392 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~ 392 (529)
.+|...|++++|+..+++..+ ..|+ . ..|..+...+...|++++|...|+++. .+.|+ ...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~ 155 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK-----AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDA 155 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH-----HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHH
Confidence 999999999999999999975 2343 3 457777788889999999999999998 44665 567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
+..+..+|...|+. +++++ .+ ..+...+.... ....+.+++|+..++++.+++|+++.+...+..+.
T Consensus 156 ~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 156 LYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 78888888766643 23333 11 23444444433 33466799999999999999999988888776653
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=2.2e-10 Score=96.69 Aligned_cols=168 Identities=13% Similarity=0.024 Sum_probs=141.1
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLN 362 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~ 362 (529)
..+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+ . .+.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA---D-APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---c-CCCCHHHHHHHHH
Confidence 45666788888999999999999987653 456888899999999999999999999875 3 2335677888888
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998652 346788889999999999999999999987 33 3467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhH
Q 009663 441 AEFAVKKLIEIDPNNGGYG 459 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~ 459 (529)
|...++++.+..|+++...
T Consensus 163 A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 163 ALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHcCCCchhhH
Confidence 9999999999888765443
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=8.3e-10 Score=105.01 Aligned_cols=238 Identities=11% Similarity=0.042 Sum_probs=148.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC--CHHHHHHHHHHhhccCCchHHHHHHHHHHHhC----CC--C-C
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP--NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNG----LD--L-D 284 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~ 284 (529)
+++.+...+...|++++|...+++........-.+ ...++..+...+...|++++|...++...+.. .. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 34455556666677777777666654320000011 11224445556667777777777777665431 11 1 2
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCC----C----ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSK----K----RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVT 356 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~ 356 (529)
..++..+...+...|++++|...+++... . ...++..+...+...|++++|...+++........-.| ...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~ 213 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDW 213 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhH
Confidence 23455567777888888888887765321 1 12367777888888999999999998876521111111 111
Q ss_pred HH----HHHHHHhCCCcHHHHHHHHHHhHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH
Q 009663 357 FI----SLLNACTHGGLVEQGRAYFKLMTKTYRIEP---QIEHYGCLVDLLGRAGRFEEALEVVKGM-------KIEPDE 422 (529)
Q Consensus 357 ~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~ 422 (529)
.. ..+..+...|++++|...++..... ...+ ....+..+...+...|++++|...+++. +..++.
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 292 (373)
T 1hz4_A 214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH
Confidence 11 2334467889999999999888642 1111 1235667788899999999999998876 111122
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 423 -VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 423 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
..+..+..++...|+.++|...++++....+
T Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 3566667788899999999999999988654
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=1.4e-10 Score=110.48 Aligned_cols=228 Identities=7% Similarity=-0.062 Sum_probs=169.4
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCC-C----CccHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC-----hhHHH
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLD-L----DSFISNALIDMYGKCGSLKEARRAFDRNSK-----KR-----LTSWN 320 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 320 (529)
....+...|++++|...++++.+.... + ...++..+..+|...|+++.|...+++..+ .+ ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 334567889999999999998864221 1 244678889999999999999988876431 11 23788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcccC-CCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC--CCC-ChhHHHH
Q 009663 321 SMINSFALHGQSENSICVFEEMMRCQDH-NIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYR--IEP-QIEHYGC 395 (529)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p-~~~~~~~ 395 (529)
.+..+|...|++++|++.|++..+..+. +..+ ...++..+..++...|++++|...+++..+... ..| ...++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999988763111 1111 234677788899999999999999999875110 123 3677888
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009663 396 LVDLLGRAGRFEEALEVVKGM----KI--EPD-EVVWGSLLNGCKIYGR---TDFAEFAVKKLIEIDPNNGGYGIMLANI 465 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 465 (529)
+...|.+.|++++|...+++. .. .|. ...+..+...+...++ +.+|+..+++.. ..|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHH
Confidence 999999999999999999887 11 222 3445555566777788 777887777632 224455677889999
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 009663 466 YGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 466 ~~~~g~~~~a~~~~~~~~~ 484 (529)
|...|++++|...+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998864
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=2.4e-10 Score=104.57 Aligned_cols=205 Identities=13% Similarity=0.025 Sum_probs=136.0
Q ss_pred CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----C----hhHHHHHHHHHHHcCChhHH
Q 009663 265 MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK-----R----LTSWNSMINSFALHGQSENS 335 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a 335 (529)
++++|...+..+ ...|...|++++|...|.+...- + ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 34566777777777777654321 1 23777888888888888888
Q ss_pred HHHHHHHhhcccCCCCCC--HHHHHHHHHHHhCC-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHH
Q 009663 336 ICVFEEMMRCQDHNIRPD--GVTFISLLNACTHG-GLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEE 408 (529)
Q Consensus 336 ~~~~~~m~~~~~~~~~p~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 408 (529)
+..+++..++....-.+. ..++..+...|... |++++|...|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888765321111111 34677788888885 9999999999888753110111 3567888889999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hcCCH
Q 009663 409 ALEVVKGM-KIEPD---E-----VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGY-----GIMLANIYG--ELGKW 472 (529)
Q Consensus 409 A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 472 (529)
|+..|++. ...|+ . ..+..+..++...|++++|+..++++++++|+.... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887 32332 1 256777788888999999999999999988865442 344555554 45778
Q ss_pred HHHHHHHHHHhh
Q 009663 473 DEVRKVRKMLKD 484 (529)
Q Consensus 473 ~~a~~~~~~~~~ 484 (529)
++|+..++++..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888865543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=2.1e-10 Score=104.22 Aligned_cols=225 Identities=12% Similarity=0.130 Sum_probs=150.6
Q ss_pred hccCCchHHHHHHHHHHHh-------CCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--------C---ChhHHHHH
Q 009663 261 GHTGMLQLGKVIHGYVYRN-------GLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--------K---RLTSWNSM 322 (529)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l 322 (529)
...|+++.|..++++..+. ..+....++..+...|...|++++|+..|++..+ . ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 2222455778889999999999999999876542 1 23478888
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccC---CCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc-----CCCC-ChhH
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDH---NIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTY-----RIEP-QIEH 392 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~ 392 (529)
...|...|++++|+..++++...... ...| ....+..+...+...|++++|...++++.+.. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998762111 1123 34667788889999999999999999887531 1123 3567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHHcC------CHHHHHHHHHHHHhcCCCC
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-K---------IEPD-EVVWGSLLNGCKIYG------RTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~ 455 (529)
+..+...|...|++++|...+++. . ..+. ...|..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888899999999999999998876 1 1222 223333333333322 2333333444333344556
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 456 GGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 456 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
..++..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778899999999999999999999988653
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=3.1e-09 Score=95.26 Aligned_cols=242 Identities=10% Similarity=0.042 Sum_probs=125.7
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCh-hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchH
Q 009663 190 GYTRVGDIKNAASLFDSMPDRDV-PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQL 268 (529)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 268 (529)
-..-.|++..++.-..++...+. .....+.++|...|+++.. . .-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~---~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------D---PTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------C---SSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------C---CCCHHHHHHHHHHHHh-ccc----
Confidence 33446777777765555543322 2333345677777766531 0 1233333333333322 211
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHHh
Q 009663 269 GKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK-----RLTSWNSMINSFALHGQSENSICVFEEMM 343 (529)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 343 (529)
+...+++..+.+ .++..+...+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 233344445666666667777777776665322 23355566666667777777777776664
Q ss_pred hcccCCCCC-----CHHHHHHHHHHH--h--CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 344 RCQDHNIRP-----DGVTFISLLNAC--T--HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 344 ~~~~~~~~p-----~~~~~~~l~~~~--~--~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
+ ..| +..+...++.++ . ..+++..|..+|+++.+. .|+...-..++.++.+.|++++|.+.++
T Consensus 164 ~-----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 N-----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp H-----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred h-----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 344 244444444442 2 223666666777666533 3432222333336666667776666665
Q ss_pred hC-CC----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 009663 415 GM-KI----------EP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYG 459 (529)
Q Consensus 415 ~~-~~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 459 (529)
.+ .. .| ++.++..++......|+ +|.++++++.+..|+++.+.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 44 21 13 44455444444444555 56666666666666655443
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=1.9e-09 Score=96.83 Aligned_cols=182 Identities=7% Similarity=-0.050 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---C---hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-CCC-HHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSKK---R---LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI-RPD-GVT 356 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~p~-~~~ 356 (529)
...+..+...+.+.|++++|...|+++.+. + ...+..+..+|.+.|++++|+..|++..+ ... .|. ...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~a 91 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ---IYQIDPRVPQA 91 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH---HCCCCchhHHH
Confidence 334445555666666666666666655432 2 33555566666666666666666666654 211 111 233
Q ss_pred HHHHHHHHhC--------CCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 009663 357 FISLLNACTH--------GGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGS 427 (529)
Q Consensus 357 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 427 (529)
+..+..++.. .|++++|...|+++.+. .|+ ......+.......+.. ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 4445555555 66666666666666543 232 22221111111000000 111356
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhc----------CCHHHHHHHHHHHhhCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNN---GGYGIMLANIYGEL----------GKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~ 487 (529)
+...+...|++++|+..|+++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 7788999999999999999999999974 45788899999876 899999999999987643
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=7.8e-11 Score=95.81 Aligned_cols=140 Identities=9% Similarity=0.002 Sum_probs=107.8
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLG 401 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 401 (529)
..+...|++++|+..++... ...|+ ...+..+...|...|++++|...|+++.+. .| +...|..+..+|.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~-----~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST-----PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYE 76 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS-----CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhc-----ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 34455677788888888774 23343 234556777888888999999988888854 55 5778888888899
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 402 RAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFA-VKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 402 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
+.|++++|...|++. .+.| +...+..+...+.+.|++++|.+. ++++++++|+++.++......+...|+
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999988887 5556 577888888889999998776655 589999999999999888888887775
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=4.2e-09 Score=94.42 Aligned_cols=241 Identities=11% Similarity=0.009 Sum_probs=157.1
Q ss_pred HHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC
Q 009663 219 IAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC 298 (529)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (529)
++-..-.|++..++.-...+. ...++ .....+.+++...|++... ....|....+..+.. |...
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~-----~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~ 83 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS-----KVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDT 83 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS-----CCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTT
T ss_pred HHHHHHhhHHHHHHHHHHhcC-----ccchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhcc
Confidence 344556788888887444332 12222 3334455667666666532 112233223343333 3332
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC-CCHHHHHHHHHHHhCCCcHHHHH
Q 009663 299 GSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIR-PDGVTFISLLNACTHGGLVEQGR 374 (529)
Q Consensus 299 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~ 374 (529)
+ |+..|++... ++..++..+..++...|++++|++++.+... .+.. -+...+..++..+.+.|+.+.|.
T Consensus 84 ~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 84 K----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp T----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred c----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 2 6677776543 3444556777888888999999999888754 3332 25567778888888899999999
Q ss_pred HHHHHhHHhcCCCC-----ChhHHHHHHHHH--HhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009663 375 AYFKLMTKTYRIEP-----QIEHYGCLVDLL--GRAG--RFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFA 444 (529)
Q Consensus 375 ~~~~~~~~~~~~~p-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 444 (529)
+.+++|.+. .| +..+...|+.++ ...| ++.+|..+|+++ ...|+..+...++.++...|++++|.+.
T Consensus 157 k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 157 TIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 999988754 56 345555666553 2334 888999999888 4456633434444578888999999999
Q ss_pred HHHHHhc----------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 445 VKKLIEI----------DPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 445 ~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
++.+.+. +|+++.+...++.+....|+ +|.+++.++.+...
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 8877765 47788888777777777786 78888888877654
No 90
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=4.6e-10 Score=114.70 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=117.4
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISL 360 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l 360 (529)
..+++.|..+|.+.|++++|++.|++.. ..+..+|..+..+|.+.|++++|+..|++..+ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-----l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-----ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHH
Confidence 3456666666666666666666666543 23445677777777777777888888877765 234 35677778
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 437 (529)
..++...|++++|++.|+++.+. .| +...|..+..+|.+.|++++|++.|++. .+.| +...+..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 88888888888888888887743 55 4677888888888888888888888877 5556 46778888888888888
Q ss_pred HHHHHHHHHHHHhcCC
Q 009663 438 TDFAEFAVKKLIEIDP 453 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p 453 (529)
+++|.+.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 8888888888877543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=2.6e-09 Score=84.63 Aligned_cols=128 Identities=21% Similarity=0.241 Sum_probs=91.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKI 434 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 434 (529)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++ .. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4455556666677777777777666431 224556666677777777777777777766 22 3356667777777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 435 YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 435 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.|++++|...++++.+..|+++..+..++.++.+.|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888778888888888888888888888888776543
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=8.2e-09 Score=90.30 Aligned_cols=185 Identities=10% Similarity=0.015 Sum_probs=116.0
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCH-HHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSK--KR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDG-VTFI 358 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~-~~~~ 358 (529)
..+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. ..-.+.. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444566667777888888888777653 21 135666777777788888888888777651 1111111 1233
Q ss_pred HHHHHHhC------------------CCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 009663 359 SLLNACTH------------------GGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGMKIE 419 (529)
Q Consensus 359 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (529)
.+..++.. .|++++|...|+++.+. .|+ ...+..+..... .....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH---------
Confidence 33333332 45666666666666633 342 222211111000 00000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccC
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG---GYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKT 490 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 490 (529)
......+...+.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|...++.+...+....
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01113456678899999999999999999999876 5788999999999999999999999988876543
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=3e-09 Score=95.48 Aligned_cols=204 Identities=11% Similarity=0.060 Sum_probs=144.1
Q ss_pred CCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-C---hhH
Q 009663 247 RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLD--SFISNALIDMYGKCGSLKEARRAFDRNSK--K-R---LTS 318 (529)
Q Consensus 247 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~ 318 (529)
+.+...+..+...+...|++++|...|+.+.+..+... ..++..+..+|.+.|++++|+..|++..+ | + ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34566777788889999999999999999998764321 55778899999999999999999998653 2 1 236
Q ss_pred HHHHHHHHHH--------cCChhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC
Q 009663 319 WNSMINSFAL--------HGQSENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ 389 (529)
Q Consensus 319 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 389 (529)
+..+..++.. .|++++|+..|+++.+ . .|+. .....+ ..+..+... -
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~--~p~~~~~~~a~--------------~~~~~~~~~-----~ 147 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID---R--YPNHELVDDAT--------------QKIRELRAK-----L 147 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH---H--CTTCTTHHHHH--------------HHHHHHHHH-----H
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH---H--CcCchhHHHHH--------------HHHHHHHHH-----H
Confidence 7788888988 9999999999999976 2 2432 111111 111111110 0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCC
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIY----------GRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~ 454 (529)
...+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|+..++++++..|+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 123556777888889999999888887 33343 45677777777765 8999999999999999998
Q ss_pred Cchh---HHHHHHHHHhcCCHHH
Q 009663 455 NGGY---GIMLANIYGELGKWDE 474 (529)
Q Consensus 455 ~~~~---~~~l~~~~~~~g~~~~ 474 (529)
++.+ ...+..++.+.|++++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhh
Confidence 7643 3444445544444443
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=1.9e-09 Score=98.60 Aligned_cols=204 Identities=8% Similarity=-0.071 Sum_probs=133.1
Q ss_pred HhhccCCchHHHHHHHHHHHh----CCCCC-ccHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----C----hhHHHHHHH
Q 009663 259 AIGHTGMLQLGKVIHGYVYRN----GLDLD-SFISNALIDMYGKCGSLKEARRAFDRNSKK-----R----LTSWNSMIN 324 (529)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~ 324 (529)
.+...|++++|...|.+..+. |.++. ..+|+.+..+|...|++++|+..|++..+- + ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566667666666665543 21111 346666777777777777777777654321 1 236778888
Q ss_pred HHHHc-CChhHHHHHHHHHhhcccCCCCC-C-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHH
Q 009663 325 SFALH-GQSENSICVFEEMMRCQDHNIRP-D-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI-----EHYGCL 396 (529)
Q Consensus 325 ~~~~~-~~~~~a~~~~~~m~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l 396 (529)
.|... |++++|+..|++..++.+..-.+ . ..++..+...+...|++++|...|+++.+...-.+.. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 99999999999887521111111 1 3467788888999999999999999988542111111 156778
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEPDEV------VWGSLLNGCK--IYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
..++...|++++|...|++. .+.|+.. .+..++.++. ..+++++|+..|+++..++|.....+..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 88899999999999999987 5555422 2344555554 45678999999988888877554444443
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=5e-10 Score=90.96 Aligned_cols=123 Identities=15% Similarity=0.004 Sum_probs=103.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYG 436 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 436 (529)
|...+...|++++|+..++... ...| +...+..+...|.+.|++++|.+.|++. .+.| +...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667789999999998876 3355 3556778899999999999999999998 5566 6889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH-HHHHhhC
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKV-RKMLKDR 485 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~ 485 (529)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5777654
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=2.4e-09 Score=97.06 Aligned_cols=229 Identities=12% Similarity=0.016 Sum_probs=151.7
Q ss_pred HhCCChhHHHHHHHHhhhccc----CCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHh------CC-CCCccHHHHH
Q 009663 223 TQNGLFSDAISFFRRMGMEVS----DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN------GL-DLDSFISNAL 291 (529)
Q Consensus 223 ~~~g~~~~A~~~~~~m~~~~~----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 291 (529)
...|++++|+..|++...... ...+....++..+..++...|++++|...++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666655543100 011223456777777888888888888888887765 22 2235578889
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC-----------ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC---CCCC-CHHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKK-----------RLTSWNSMINSFALHGQSENSICVFEEMMRCQDH---NIRP-DGVT 356 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~p-~~~~ 356 (529)
..+|...|++++|...|++.... ...++..+...|...|++++|+..++++.+.... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999875421 2347888999999999999999999999862111 1133 3456
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhc------CCCC-ChhHHHHHHHHHHhcC------ChHHHHHHHHhCC-CCC-C
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTY------RIEP-QIEHYGCLVDLLGRAG------RFEEALEVVKGMK-IEP-D 421 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~ 421 (529)
+..+...+...|++++|...++++.+.. ...+ ....+..+...+...+ .+.++...++..+ ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7888899999999999999999987531 1122 2334444444444333 2445555555553 223 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 009663 422 EVVWGSLLNGCKIYGRTDFAEFAVKKLIEI 451 (529)
Q Consensus 422 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 451 (529)
..++..+...+...|++++|...++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888899999999999999999998875
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=7.3e-10 Score=113.75 Aligned_cols=167 Identities=8% Similarity=-0.089 Sum_probs=111.5
Q ss_pred HhCCCHHHHHHHHhhcC-----------CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHH
Q 009663 296 GKCGSLKEARRAFDRNS-----------KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNA 363 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~ 363 (529)
...|++++|++.|++.. ..+...+..+..++...|++++|+..|+++.+ ..| +...+..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE-----RVGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCcchHHHHHHHHHH
Confidence 55677777777776654 22344666777777777777777777777754 223 44566666667
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 440 (529)
+...|++++|...|+++.+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++
T Consensus 477 ~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777643 44 46667777777777777777 7777766 3344 46667777777777777777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
|++.|+++.+++|++..++..++.++...|+
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777777655443
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.04 E-value=1.4e-09 Score=87.95 Aligned_cols=103 Identities=11% Similarity=-0.060 Sum_probs=92.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 385 RIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 385 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++.+++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 5566 4667888889999999999999999998 4455 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 462 LANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 462 l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
++.+|.+.|++++|+..|++..+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987653
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=5.9e-09 Score=94.93 Aligned_cols=175 Identities=11% Similarity=0.053 Sum_probs=138.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 301 LKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 301 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
.+.....+......+...+..+...+...|++++|+..|++... ..| +...+..+...+...|++++|...+++
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ-----LSNQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH-----hCCcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34445555555555556777788888899999999999999865 334 556778888899999999999999998
Q ss_pred hHHhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 009663 380 MTKTYRIEPQIEHYG-CLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN- 455 (529)
Q Consensus 380 ~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~- 455 (529)
+... .|+..... .....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++
T Consensus 177 ~~~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 177 IPLQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp SCGG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred Cchh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 8744 56544332 2333466778888888888877 4445 68889999999999999999999999999999987
Q ss_pred -chhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 456 -GGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 456 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
..++..++.++...|+.++|...+++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8899999999999999999999888764
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.02 E-value=1.3e-08 Score=93.74 Aligned_cols=222 Identities=11% Similarity=0.025 Sum_probs=152.2
Q ss_pred CCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc-cCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHH
Q 009663 225 NGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH-TGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE 303 (529)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 303 (529)
.|++++|.+++++..+... .. +.. .++++.|...|..+ ...|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~----~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK----TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHcc----cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHH
Confidence 4677888888887764311 11 112 46677777766654 456777788888
Q ss_pred HHHHHhhcCCC-----C----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC--HHHHHHHHHHHhCCCcHHH
Q 009663 304 ARRAFDRNSKK-----R----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--GVTFISLLNACTHGGLVEQ 372 (529)
Q Consensus 304 A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~ 372 (529)
|...|.+...- + ..+|+.+...|...|++++|+..|++..++....-.|. ..++..+...|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 88777654321 1 23788888899999999999999998766321211222 3567778888888 99999
Q ss_pred HHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHH
Q 009663 373 GRAYFKLMTKTYRIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI---EPD----EVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 373 a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~ 440 (529)
|+..|++..+...-.. ...++..+...|.+.|++++|+..|++. .+ .++ ...+..++.++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998875321111 1467888999999999999999999887 21 122 2356666677888899999
Q ss_pred HHHHHHHHHhcCCCCchh-----HHHHHHHHHhcCCHHHHHHH
Q 009663 441 AEFAVKKLIEIDPNNGGY-----GIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 478 (529)
|...|++++ ..|+.... ...++.++ ..|+.+.+..+
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999999 88864432 33445544 56777666553
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=1.3e-08 Score=80.43 Aligned_cols=131 Identities=19% Similarity=0.290 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.|..+...+...|++++|..+++++.+ .. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE---LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH---cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHH
Confidence 466677788888888888888888865 32 2356677777888888889999999998887541 33567788888
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 398 DLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
..+...|++++|.++++++ .. +.+...+..+...+...|++++|...++++.+.+|+
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8899999999999999887 32 336778888888899999999999999999988874
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.99 E-value=5.7e-09 Score=105.21 Aligned_cols=158 Identities=11% Similarity=0.066 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHH
Q 009663 298 CGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 298 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 373 (529)
.|++++|...|++..+. +...|..+...+...|++++|++.+++..+ ..| +...+..+..++...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA-----LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 47889999999987643 456899999999999999999999999974 334 567888899999999999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHH
Q 009663 374 RAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY---GRTDFAEFAVKK 447 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 447 (529)
...+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.+++
T Consensus 77 ~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 77 AVLLQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 9999999865 45 5788999999999999999999999988 4445 578888999999999 999999999999
Q ss_pred HHhcCCCCchhHHHHH
Q 009663 448 LIEIDPNNGGYGIMLA 463 (529)
Q Consensus 448 ~~~~~p~~~~~~~~l~ 463 (529)
+++.+|++...+..++
T Consensus 154 al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 154 AVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHTCCCSCHHHHTT
T ss_pred HHhcCCcccChHHHhC
Confidence 9999998888887775
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=2.8e-09 Score=89.22 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=58.5
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 409 ALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN--GGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 409 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
|...+++. ...| +...+..+...+...|++++|+..|+++++.+|+. +..+..++.++...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45555554 3345 57778888888888888999999998888888764 55888888888888998888888877653
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=4.3e-08 Score=84.72 Aligned_cols=161 Identities=9% Similarity=-0.072 Sum_probs=124.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC----cHHHHHHHHHHhHHhcCCCCCh
Q 009663 315 RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG----LVEQGRAYFKLMTKTYRIEPQI 390 (529)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~ 390 (529)
+...+..+...|...+++++|+.+|++..+ .| +...+..+...|.. + ++++|..+|++..+. -++
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~ 85 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAA---QG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSK 85 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCH
Confidence 455666677777777888888888888776 43 44566666666766 6 788899988888643 356
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchh
Q 009663 391 EHYGCLVDLLGR----AGRFEEALEVVKGM-KIEPD---EVVWGSLLNGCKI----YGRTDFAEFAVKKLIEIDPNNGGY 458 (529)
Q Consensus 391 ~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~ 458 (529)
..+..|...|.. .+++++|+++|++. ...|+ +..+..|...|.. .+++++|+..|+++.+. |.++..
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 677778878876 78899999999887 44453 7788888888888 78899999999999888 557778
Q ss_pred HHHHHHHHHhc-C-----CHHHHHHHHHHHhhCCC
Q 009663 459 GIMLANIYGEL-G-----KWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 459 ~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 487 (529)
+..|+.+|... | ++++|...+++..+.|.
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88898888764 3 89999999999887764
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=2.2e-08 Score=86.35 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLV 397 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 397 (529)
..+..+|.+.|++++|+..|++..+ ..| +...+..+..++...|++++|...|+++.+. .| +...+..+.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg 129 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQ-----KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLG 129 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHH
Confidence 3478889999999999999999875 234 5677888889999999999999999999854 56 577888888
Q ss_pred HHHHhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 398 DLLGRAGR--FEEALEVVKGMKIEPDE--VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 398 ~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.+|...|+ .+.+...++... .|++ ..+.....++...|++++|+..|++++++.|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 130 NYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 88876654 445566666653 3443 34455666777889999999999999999995
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=6.1e-09 Score=95.93 Aligned_cols=200 Identities=9% Similarity=-0.045 Sum_probs=149.9
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 009663 262 HTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEE 341 (529)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (529)
..|++++|.+++++..+.... . .+...++++.|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356788899999888765321 1 01115788888888765 45778899999999999998
Q ss_pred HhhcccCCCCC--CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCC--CC--ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 342 MMRCQDHNIRP--DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRI--EP--QIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 342 m~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
..++....-.+ -..+|..+...|...|++++|...|++..+...- .+ ...++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 87632111111 1346888888999999999999999987643211 11 14577888899988 999999999987
Q ss_pred C-CCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 416 M-KIEP---D----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG------GYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 416 ~-~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
. .+.| + ..++..+...+...|++++|+..|++++++.|++. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 2111 1 46788889999999999999999999999765432 3666777888889999999999999
Q ss_pred Hh
Q 009663 482 LK 483 (529)
Q Consensus 482 ~~ 483 (529)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 88
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=7.9e-09 Score=80.90 Aligned_cols=92 Identities=11% Similarity=0.038 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
.+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3334444444444444444444443 2222 3444444444444444555555555555444444444444444444444
Q ss_pred CCHHHHHHHHHHHh
Q 009663 470 GKWDEVRKVRKMLK 483 (529)
Q Consensus 470 g~~~~a~~~~~~~~ 483 (529)
|++++|+..|++..
T Consensus 95 ~~~~~A~~~~~~al 108 (126)
T 4gco_A 95 REWSKAQRAYEDAL 108 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555554444443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=5.8e-08 Score=97.85 Aligned_cols=145 Identities=11% Similarity=-0.025 Sum_probs=61.0
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHH
Q 009663 264 GMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFE 340 (529)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 340 (529)
|++++|...++++.+.... +...+..+...|...|++++|.+.|++..+ .+...|..+..+|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4445555555554443321 334444455555555555555555554332 123345555555555555555555555
Q ss_pred HHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 009663 341 EMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA---GRFEEALEVVKGM 416 (529)
Q Consensus 341 ~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 416 (529)
+..+ . .+.+...+..+..++...|++++|...++++.+. .| +...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~---~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASD---A-APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHH---H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHh---c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 5543 1 1112344444555555555555555555555432 22 344445555555555 5555555555544
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=2.3e-08 Score=78.18 Aligned_cols=113 Identities=15% Similarity=0.069 Sum_probs=96.5
Q ss_pred CCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 009663 350 IRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVW 425 (529)
Q Consensus 350 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 425 (529)
+.|+. ..+......+.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..|++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44543 45667788888999999999999998854 45 6888999999999999999999999987 4455 68889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANI 465 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 465 (529)
..+..++...|++++|++.|+++++++|+++.+...+..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999998888765
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=7.2e-09 Score=83.80 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=82.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 385 RIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 385 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4455 4566777788888888888888888877 3344 67788888888888889999999999988888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 462 LANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 462 l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
++.+|...|++++|...+++..+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888899999998888887654
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=4.7e-08 Score=84.53 Aligned_cols=129 Identities=10% Similarity=-0.089 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg 78 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 4556677788888888888888765 35677788888888888888888888888887541 23567788888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEP-D----------------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.+|...|++++|.+.|++. ...| + ...+..+..++...|++++|...++++.+..|++
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888888776 2222 2 2677778888888888888888888888888865
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=3.5e-07 Score=83.50 Aligned_cols=163 Identities=9% Similarity=0.006 Sum_probs=121.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH----HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hh
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV----TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IE 391 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 391 (529)
...+..+...|++++|..++++.... ....|+.. .+..+...+...+++++|...++++.+...-.++ ..
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKK--EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcc--ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 33467788889999999999988651 22233322 2334666677788999999999998863111223 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------c
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-----KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN------G 456 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~ 456 (529)
+++.+...|...|++++|...|+++ ....+ ..++..+...|.+.|++++|+..+++++++.+.. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6889999999999999999998876 11112 3477888999999999999999999999855322 6
Q ss_pred hhHHHHHHHHHhcCC-HHHHHHHHHHHhh
Q 009663 457 GYGIMLANIYGELGK-WDEVRKVRKMLKD 484 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 484 (529)
.++..++.+|.+.|+ +++|...+++...
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 788999999999995 6999999888753
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=3.4e-07 Score=82.95 Aligned_cols=223 Identities=8% Similarity=-0.038 Sum_probs=126.0
Q ss_pred ChhHHHHHHHHhhhcccCCCCCCHH-HHHHHHHHhhccC--CchHHHHHHHHHHHhCCCCCccHHHHHHHHH----HhC-
Q 009663 227 LFSDAISFFRRMGMEVSDNIRPNQV-TLVCALSAIGHTG--MLQLGKVIHGYVYRNGLDLDSFISNALIDMY----GKC- 298 (529)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 298 (529)
..++|++.+..+. .+.|+.. .++.--.++...+ ++++++.+++.++...+. +..+++.-..++ ...
T Consensus 48 ~s~~aL~~t~~~L-----~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 48 YSERALHITELGI-----NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CSHHHHHHHHHHH-----HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH-----HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 3457777777776 3355433 4555555566666 777777777777766543 444454443333 333
Q ss_pred --CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChh--HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCc--
Q 009663 299 --GSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSE--NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGL-- 369 (529)
Q Consensus 299 --g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~-- 369 (529)
+++++++.+++++.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+ .. .-|...|+.....+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d-~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TD-LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HC-TTCHHHHHHHHHHHHSSGGGC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hC-CCCHHHHHHHHHHHHhccccc
Confidence 566666666665543 34446666666666666666 66666666654 22 2244555555445555554
Q ss_pred ----HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCH
Q 009663 370 ----VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEE-ALEVVKGM-KI----EPDEVVWGSLLNGCKIYGRT 438 (529)
Q Consensus 370 ----~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~ 438 (529)
++++.+.++.+... .| |...|+.+...+.+.|+..+ +..+++++ .. ..+...+..++..+.+.|+.
T Consensus 198 ~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred hhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 56666666666543 33 45566666666666665333 33444444 11 22455566666666666666
Q ss_pred HHHHHHHHHHHh-cCCCCchhHHHH
Q 009663 439 DFAEFAVKKLIE-IDPNNGGYGIML 462 (529)
Q Consensus 439 ~~A~~~~~~~~~-~~p~~~~~~~~l 462 (529)
++|+++++.+.+ .+|....+|...
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHhccChHHHHHHHHH
Confidence 666666666664 566555555443
No 114
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.1e-07 Score=97.74 Aligned_cols=187 Identities=10% Similarity=-0.005 Sum_probs=142.3
Q ss_pred hccCCchHHHHHHHHHH--------HhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 009663 261 GHTGMLQLGKVIHGYVY--------RNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALH 329 (529)
Q Consensus 261 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 329 (529)
...|++++|.+.++++. +.. +.+...+..+..+|...|++++|+..|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77889999999999888 433 23566788888999999999999999987653 4566888999999999
Q ss_pred CChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 009663 330 GQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 407 (529)
|++++|+..|++..+ ..| +...+..+..++...|++++ ...|+++.+. .| +...|..+..+|.+.|+++
T Consensus 481 g~~~~A~~~~~~al~-----l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD-----TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp TCHHHHHHHHHHHHH-----HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHH
Confidence 999999999999875 234 45677888888999999999 9999998854 55 5778899999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCch
Q 009663 408 EALEVVKGM-KIEPD-EVVWGSLLNGCKIYGR-----TDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 408 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~ 457 (529)
+|.+.|++. ...|+ ...+..+..++...++ .+...+..+......++++.
T Consensus 552 ~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 552 GAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999999998 67776 5667777777666554 23333444444444444444
No 115
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=6.1e-08 Score=83.47 Aligned_cols=162 Identities=9% Similarity=0.027 Sum_probs=105.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHH----------------HHHhCccCCCchHHHHHHHHHHHhCCCC
Q 009663 84 ITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPH----------------VLKSCPDVLESRGTKMVHTQIVKSGFEQ 147 (529)
Q Consensus 84 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 147 (529)
...+... |++++|+..|++..+.. +.+...|.. +..++...|++++|...++..++.. +.
T Consensus 11 g~~~~~~-g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 11 VSAAIEA-GQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 3444556 77777777777777654 334445555 6667777788888888887777765 33
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcC--CHHHHHHHHhhCCCCChh--hHHHHHH
Q 009663 148 YPVVETALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRVG--DIKNAASLFDSMPDRDVP--AWNSVIA 220 (529)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~--~~~~li~ 220 (529)
+...+..+..++...| ++++|.+.|++..+ | +..+|..+...|...| +.+.+...+.....++.. .+.....
T Consensus 87 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRG-QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 5677777777777788 78888888777764 3 4556666666665443 345566677776666543 2344455
Q ss_pred HHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHH
Q 009663 221 GCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVC 255 (529)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ 255 (529)
++...|++++|+..|++.. ...|+......
T Consensus 166 ~~~~~~~~~~A~~~~~~al-----~l~P~~~~~~~ 195 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVI-----LRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHT-----TTSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH-----HhCCCHHHHHH
Confidence 6666788888888888887 55777554433
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=1.2e-07 Score=78.20 Aligned_cols=127 Identities=9% Similarity=0.033 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNG 431 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 431 (529)
..+..+...+...|++++|...|++..+. .| +...+..+..++...|++++|...+++. ...| +...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34566677777888999999988888754 34 5778888888899999999999998887 3334 67888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCHHHHHHHHHHHhh
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANI--YGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 484 (529)
+...|++++|...++++.+..|++...+..+..+ +...|++++|+..+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999988888555554 7788999999999887753
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=1.5e-07 Score=85.85 Aligned_cols=164 Identities=9% Similarity=-0.003 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC-CCH----HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCC--CCC-
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIR-PDG----VTFISLLNACTHGGLVEQGRAYFKLMTKTYRI--EPQ- 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~- 389 (529)
.+...+..+...|++++|.+.+.+..+ .... ++. ..+..+...+...|++++|...+++..+...- .+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELK---KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhc---cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 444556777888888888888887765 2221 111 12334555677888999999999887643111 111
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----
Q 009663 390 -IEHYGCLVDLLGRAGRFEEALEVVKGM----KIEPD-----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN----- 454 (529)
Q Consensus 390 -~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----- 454 (529)
..+++.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|+..+++++++.++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 447888899999999999999988876 11222 257888889999999999999999999885432
Q ss_pred -CchhHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 009663 455 -NGGYGIMLANIYGELGKWDEV-RKVRKMLKD 484 (529)
Q Consensus 455 -~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 484 (529)
-..++..++.+|.+.|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156788899999999999999 777777653
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=5.7e-08 Score=81.16 Aligned_cols=156 Identities=13% Similarity=0.020 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNA 363 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~ 363 (529)
.+..+...+...|++++|...|++..+. +...+..+...+...|++++|+..++++.. ..|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-----~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL-----EYQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-----GGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-----ccCChHHHHHHHHH
Confidence 3455677888899999999999887743 456888888999999999999999998854 23333322222111
Q ss_pred -HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCC
Q 009663 364 -CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD---EVVWGSLLNGCKIYGR 437 (529)
Q Consensus 364 -~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~ 437 (529)
+...+....|...+++..+. .| +...+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 11112223467888888754 56 5788899999999999999999999887 55654 5688889999999999
Q ss_pred HHHHHHHHHHHHh
Q 009663 438 TDFAEFAVKKLIE 450 (529)
Q Consensus 438 ~~~A~~~~~~~~~ 450 (529)
.++|...|++++.
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999988764
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=7.8e-08 Score=87.44 Aligned_cols=134 Identities=10% Similarity=-0.025 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 009663 352 PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLL 429 (529)
Q Consensus 352 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 429 (529)
.+...+..+...+...|++++|...|+++.+. .| +...+..+...+.+.|++++|...++++ ...|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34456677778888999999999999999865 56 5788999999999999999999999998 5567765444433
Q ss_pred H-HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 430 N-GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 430 ~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
. .+...++.++|+..++++.+.+|+++..+..++.++...|++++|+..++++.+....
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3 3677888899999999999999999999999999999999999999999999887643
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=1.3e-05 Score=78.51 Aligned_cols=372 Identities=11% Similarity=0.011 Sum_probs=220.6
Q ss_pred cchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC--CCChhHHHHHHHHHhcCCC-ChHHHHHHHH
Q 009663 26 INHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT--TPNTYLYTAMITAYASQPA-HASSAFSLYR 102 (529)
Q Consensus 26 ~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~-~~~~a~~~~~ 102 (529)
...++.|++.+.+. +-. + +.+.+..+|++.. .|+...|...+.-..+. + ..+....+|+
T Consensus 11 i~~aR~vyer~l~~---------------~P~-~-~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~-~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL---------------YMS-K-DYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV-SQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH---------------HHT-T-CHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH-C----CTHHHHH
T ss_pred hHHHHHHHHHHHHH---------------CCC-C-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 55566666666544 222 5 9999999999886 48888999988888776 5 4567788888
Q ss_pred HHHHC-CCCCCCcchHHHHHHhCcc----CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009663 103 DMVRR-GQPQPNQFIYPHVLKSCPD----VLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMS 177 (529)
Q Consensus 103 ~m~~~-~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~ 177 (529)
..+.. |.-+++...|...+..+.. .++.+.+..+|+.++......-...|......-.. . ....+.+++.+..
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~-~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-L-NKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-H-CHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-h-ccccHHHHHHHHh
Confidence 88764 3213466778888776543 46778899999999874222122333333322222 2 2333333332211
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCC--C-----hhHHHHHHHHhhhcccCCCCCCH
Q 009663 178 DRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNG--L-----FSDAISFFRRMGMEVSDNIRPNQ 250 (529)
Q Consensus 178 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~~~~p~~ 250 (529)
| .|..- ...++++...+.. .+...|...+..-...+ - .+.+..+|+++... .+.+.
T Consensus 151 -~---~y~~a------r~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~----~p~~~ 213 (493)
T 2uy1_A 151 -P---IFQSS------FQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS----FYYAE 213 (493)
T ss_dssp -H---HHHHH------HHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCH
T ss_pred -H---HHHHH------HHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc----CCCCH
Confidence 0 00000 0002222222222 23345555444432221 1 34567788887753 34456
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHH-HHHHHhhcC--C-------C---Chh
Q 009663 251 VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE-ARRAFDRNS--K-------K---RLT 317 (529)
Q Consensus 251 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~--~-------~---~~~ 317 (529)
..|...+.-+...|+++.|..+++.+... +.+...+. .|+...+.++ ...+.+... . + ...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence 67777777778889999999999999988 23333222 2222111111 112222110 0 0 113
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHH--HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFIS--LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGC 395 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 395 (529)
.|...+....+.++.+.|..+|.++.. .+ ++...|.. .+.... .++.+.|..+|+...+.++ -++..+..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~---~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~--~~~~~~~~ 359 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGN---EG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHP--DSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTT---SC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhC---CC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCC--CCHHHHHH
Confidence 566777777778889999999998822 22 23444432 222222 2368999999999887632 23555666
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 396 LVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++..
T Consensus 360 yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788899999999999983 2577788888877788999988888888875
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=4.5e-08 Score=78.50 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=80.8
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 385 RIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 385 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3345 3455666777788888888888888877 3344 67778888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 462 LANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 462 l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
++.+|...|++++|...+++..+..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888887654
No 122
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.79 E-value=1.6e-07 Score=82.03 Aligned_cols=184 Identities=14% Similarity=-0.002 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Chh---HHHH
Q 009663 250 QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLD--SFISNALIDMYGKCGSLKEARRAFDRNSK--K-RLT---SWNS 321 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~~~ 321 (529)
...+..+...+...|++++|...|+.+.+..+... ...+..+..+|.+.|++++|+..|+++.+ | +.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44556667788999999999999999998755322 34677789999999999999999998653 2 221 5556
Q ss_pred HHHHHHH------------------cCChhHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 322 MINSFAL------------------HGQSENSICVFEEMMRCQDHNIRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 322 li~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
+..++.. .|++++|+..|+++ ....|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-----l~~~P~~~~a~~a~~~----------l~~~~~~~~- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL-----VRGYPNSQYTTDATKR----------LVFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHH-----HTTCTTCTTHHHHHHH----------HHHHHHHHH-
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH-----HHHCcCChhHHHHHHH----------HHHHHHHHH-
Confidence 6666665 56889999999998 44555542 2221111 001111111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 009663 383 TYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 383 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 457 (529)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|++++|++.++++....|++..
T Consensus 148 --------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 --------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred --------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12234677889999999999999988 43443 256888889999999999999999999998887643
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=1.7e-07 Score=91.85 Aligned_cols=353 Identities=10% Similarity=-0.009 Sum_probs=206.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCC-chHHHHHHHHHHHh-CC-CCchhHHHHHHHHHH----hcCC
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLE-SRGTKMVHTQIVKS-GF-EQYPVVETALVNSYS----RSGN 164 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-g~-~~~~~~~~~l~~~~~----~~g~ 164 (529)
|+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+.++.. |. ..+...|...+..+. ..+
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~- 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT- 103 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH-
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH-
Confidence 6788899999888874 5688888777776555542 35567777777764 43 235677777776654 235
Q ss_pred CHHHHHHHHhhCCC-CChhhHHHHHHHHH---hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhh
Q 009663 165 DIGIARKLFDEMSD-RNVVSWTAMISGYT---RVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGM 240 (529)
Q Consensus 165 ~~~~A~~~~~~~~~-~~~~~~~~ll~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 240 (529)
+.+.+.++|++... |.. .+..+-..|. +..+...+.+++ .... +.+..|...++.+..
T Consensus 104 ~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~---------------~~~~--~~y~~ar~~y~~~~~ 165 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIV---------------GDTL--PIFQSSFQRYQQIQP 165 (493)
T ss_dssp HHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHH---------------HHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHH---------------HHHh--HHHHHHHHHHHHHHH
Confidence 67788888887765 311 1122211111 111122222222 1111 233444444444432
Q ss_pred cccCCCCCCHHHHHHHHHHhhcc--CC-----chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 009663 241 EVSDNIRPNQVTLVCALSAIGHT--GM-----LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK 313 (529)
Q Consensus 241 ~~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 313 (529)
... + .+...|...+.--... +- .+.+..+|++++...+ .+...|...+..+.+.|+.+.|..+|++...
T Consensus 166 ~~~-~--~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 166 LIR-G--WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHH-T--CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHh-h--ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 100 1 1223444433332211 11 3456788999888654 4577788888888999999999999986432
Q ss_pred -C-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhccc-C-----CCCC---CHHHHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 314 -K-RLTSWNSMINSFALHGQSENSICVFEEMMRCQD-H-----NIRP---DGVTFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 314 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~-----~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
| +...|. .|+...+.++. ++.+.+... . +..+ ....|...+....+.++.+.|..+|+++ +
T Consensus 242 ~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~ 313 (493)
T 2uy1_A 242 MSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G 313 (493)
T ss_dssp HCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T
T ss_pred CCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h
Confidence 2 222222 23332222222 222221000 0 0011 1244666666666678899999999998 3
Q ss_pred hcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 009663 383 TYRIEPQIEHYGCLVDLLGRA-GRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYG 459 (529)
Q Consensus 383 ~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 459 (529)
.. ..+...|...+..-... ++.+.|..+|+.. ..+-++..|...++.....|+.+.|..+|+++ +.....+
T Consensus 314 ~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw 387 (493)
T 2uy1_A 314 NE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMW 387 (493)
T ss_dssp TS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHH
T ss_pred CC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHH
Confidence 31 23445554333333333 3699999999987 22224556777788788899999999999998 3466778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 460 IMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 460 ~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
...+..-...|+.+.+..++++..+
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8887777788999999998888864
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=3.2e-07 Score=79.13 Aligned_cols=173 Identities=9% Similarity=-0.091 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHHcC----ChhHHHHHHHHH
Q 009663 268 LGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK-RLTSWNSMINSFALHG----QSENSICVFEEM 342 (529)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m 342 (529)
+|...|++..+.| +...+..+...|...+++++|+..|++..+. +...+..+...|.. + ++++|+.+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4556666666654 4566667777777788888888888776544 44566677777766 6 788888888888
Q ss_pred hhcccCCCCCCHHHHHHHHHHHhC----CCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCChHHHHH
Q 009663 343 MRCQDHNIRPDGVTFISLLNACTH----GGLVEQGRAYFKLMTKTYRIEPQ---IEHYGCLVDLLGR----AGRFEEALE 411 (529)
Q Consensus 343 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~ 411 (529)
.+ .+ +...+..+...|.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|..
T Consensus 80 ~~---~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 80 VE---AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HH---TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HH---CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 76 43 45566677777776 78899999999988743 443 6788888888888 788999999
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 009663 412 VVKGM-KIEPDEVVWGSLLNGCKIY-G-----RTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 412 ~~~~~-~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p 453 (529)
+|++. ....+...+..+...|... | ++++|..+|+++.+.+.
T Consensus 151 ~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 151 YFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99887 3335666777777777653 3 89999999999988764
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.77 E-value=6.8e-08 Score=80.78 Aligned_cols=120 Identities=10% Similarity=0.067 Sum_probs=73.6
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--HH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNG-CKIYGRT--DF 440 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~~ 440 (529)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++. ...| +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4456666666666665431 224556666666666677777776666665 2223 45556666666 5566666 77
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|+..++++++.+|+++.++..++.+|...|++++|...++++.+...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 77777777777777777777777777777777777777777665543
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.76 E-value=8.7e-06 Score=73.73 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=167.1
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC--CHHHHHHHHhhcCCC---ChhHHHHHHHHH----HHc---CC
Q 009663 264 GMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG--SLKEARRAFDRNSKK---RLTSWNSMINSF----ALH---GQ 331 (529)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~li~~~----~~~---~~ 331 (529)
...++|+.+++.++..++. +..+++.-..++...| ++++++++++.+... +..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3446899999999988754 5567787888888888 999999999987643 444666555444 555 78
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH--HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC---
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE--QGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGR--- 405 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--- 405 (529)
+++++.+++++.+ .-+-+...|+.-.-.+.+.|.++ ++...++++.+. .| |...|+.-...+.+.|+
T Consensus 126 ~~~EL~~~~~~l~----~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 126 PYREFDILEAMLS----SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp THHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccch
Confidence 9999999999975 23346677777766777778877 999999999965 44 67788877777777776
Q ss_pred ---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCCHHHHH
Q 009663 406 ---FEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRT-DFAEFAVKKLIEID---PNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 406 ---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
++++++.++++ ...| |...|+.+...+.+.|+. +.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|+
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999887 4455 788898888888888874 44667888877766 778899999999999999999999
Q ss_pred HHHHHHhh
Q 009663 477 KVRKMLKD 484 (529)
Q Consensus 477 ~~~~~~~~ 484 (529)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=1.4e-07 Score=74.24 Aligned_cols=116 Identities=13% Similarity=0.024 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLL 429 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 429 (529)
+...+..+...+...|++++|...|+++.+ ..| +...+..+...|...|++++|...+++. ...| +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 455677777788888888888888888874 344 5777888888888888888888888877 3334 577888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
.++...|++++|++.++++.+..|++...+..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 889999999999999999999999888888888888877664
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.75 E-value=2.6e-07 Score=71.67 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNG 431 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 431 (529)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..+++++ .. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4566777777888888888888888887541 235677788888888888888888888877 32 3467788888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
+...|++++|...++++.+..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999988888888888776554
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1.5e-07 Score=83.28 Aligned_cols=125 Identities=11% Similarity=-0.007 Sum_probs=72.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHHc
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDE----VVWGSLLNGCKIY 435 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 435 (529)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 444555666677776666666522 343224444555666667777777776655322322 2455556666667
Q ss_pred CCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 436 GRTDFAEFAVKKLIEID--PN-NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|++++|+..|+++.... |. .+......+.++.+.|+.++|...|+++.....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 77777777777665422 32 334556666666677777777777766665543
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.73 E-value=9e-08 Score=89.15 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999887 4445 68889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHH-HHHHHHHh
Q 009663 468 ELGKWDEV-RKVRKMLK 483 (529)
Q Consensus 468 ~~g~~~~a-~~~~~~~~ 483 (529)
+.|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44566664
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.73 E-value=2.2e-07 Score=72.79 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLN 430 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 430 (529)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34556677777888888888888888887541 235777888888888999999999888887 3334 5778888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
.+...|++++|...++++.+..|+++..+..++.++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999888875
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=5.3e-07 Score=77.75 Aligned_cols=130 Identities=8% Similarity=-0.019 Sum_probs=81.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCC
Q 009663 288 SNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG 367 (529)
Q Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~ 367 (529)
+..+...+...|++++|...|++...++...|..+..+|...|++++|+..|++..+ .. +.+...+..+..++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC-ccchHHHHHHHHHHHHc
Confidence 344556666677777777777766666666667777777777777777777776654 21 22445566666667777
Q ss_pred CcHHHHHHHHHHhHHhcC-------------CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 009663 368 GLVEQGRAYFKLMTKTYR-------------IEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD 421 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~-------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 421 (529)
|++++|...|+++.+... ..| ....+..+..+|.+.|++++|.+.|++. ...|+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 777777777776664211 011 1256666666777777777777777665 44554
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=7.2e-08 Score=87.33 Aligned_cols=189 Identities=8% Similarity=-0.018 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLL 361 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~ 361 (529)
..+..+...+...|++++|+..|++.. ..+...|..+..+|.+.|++++|+..+++..+ ..| +...+..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-----LDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Confidence 445556666777777777777776543 23455677777777778888888888887753 334 455677777
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
.++...|++++|...|+++.+. .|+ ...+...+....+..+...... ........+......+... ..|++++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 7788888888888888777643 221 1111111111111111111111 1222333444444444332 3689999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHhhC
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGEL-GKWDEVRKVRKMLKDR 485 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 485 (529)
|++.++++.+.+|++......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998888888887777766 7799999999988764
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.70 E-value=6.7e-08 Score=74.92 Aligned_cols=96 Identities=15% Similarity=0.016 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887 4455 6888888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhCCC
Q 009663 470 GKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 470 g~~~~a~~~~~~~~~~~~ 487 (529)
|++++|+..+++..+...
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887643
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.9e-07 Score=72.99 Aligned_cols=96 Identities=16% Similarity=0.022 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44555666677777777777777766 3333 566777777777777888888888888887777777777777777878
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 009663 469 LGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 469 ~g~~~~a~~~~~~~~~~~ 486 (529)
.|++++|+..+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 888888887777776543
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=1.7e-07 Score=71.16 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN--NGGYGIMLAN 464 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 464 (529)
+...+..+...+...|++++|...+++. ... .+...+..+...+...|++++|+..++++.+..|+ +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556677777888888888888888876 333 36778888888899999999999999999999998 8999999999
Q ss_pred HHHhc-CCHHHHHHHHHHHhhCCCc
Q 009663 465 IYGEL-GKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 465 ~~~~~-g~~~~a~~~~~~~~~~~~~ 488 (529)
++.+. |++++|.+.++++.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999998877653
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=1.1e-06 Score=80.18 Aligned_cols=165 Identities=15% Similarity=0.003 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC---CCh------hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC--HH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSK---KRL------TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--GV 355 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~ 355 (529)
.+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++..+.......+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567778889999999888865332 111 1344466677788899999999998875211212222 44
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC------CC-CH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KI------EP-DE 422 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 422 (529)
+++.+...|...|++++|...++++.+.....|+ ..++..+...|.+.|++++|...+++. .+ .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999988732111222 258888999999999999999999876 11 11 16
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 009663 423 VVWGSLLNGCKIYGRTDFA-EFAVKKLIEI 451 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 451 (529)
.++..+...+...|++++| ...++++..+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7788899999999999999 7889888763
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=2e-07 Score=75.18 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=84.4
Q ss_pred CCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 009663 350 IRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVW 425 (529)
Q Consensus 350 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 425 (529)
+.|+ ...+..+...+...|++++|...|+++.+. .| ++..|..+..+|...|++++|+..|++. .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 4453 345667777888889999999999988854 55 5788888889999999999999999887 4455 57788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8899999999999999999999999998643
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=6.6e-07 Score=79.15 Aligned_cols=137 Identities=10% Similarity=-0.091 Sum_probs=101.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 009663 319 WNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ--IEHYGCL 396 (529)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 396 (529)
+......+...|++++|.++|..+.. ..|+......+...+.+.+++++|+..|+...+. . .|. ...+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~L 177 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV-----AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHH
Confidence 44566777888899999988888743 3454445455555778889999999999866421 1 111 3467778
Q ss_pred HHHHHhcCChHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 397 VDLLGRAGRFEEALEVVKGM--K-IEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
..++.+.|++++|++.|++. + ..|. ...+.....++.+.|+.++|...|+++...+|+ +.+...|.
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88899999999999999988 2 2153 346677788899999999999999999999997 66665553
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.64 E-value=1.4e-07 Score=76.19 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=91.1
Q ss_pred CCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 009663 349 NIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVV 424 (529)
Q Consensus 349 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 424 (529)
...| +...+..+...+...|++++|...|+.+... .| +...|..+..+|...|++++|...|++. .+.| +...
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 91 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 3445 3445667778888999999999999998854 45 6788889999999999999999999987 4445 5788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
+..+..++...|++++|+..|++++++.|+++.....
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 8889999999999999999999999999987766443
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=2.1e-07 Score=76.58 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLL 429 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 429 (529)
+...+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..|++. .+.| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567788888899999999999999999864 45 6888999999999999999999999988 4455 588899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
.++...|++++|+..|+++++++|++...+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999998886655443
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.61 E-value=5.7e-07 Score=71.29 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|+++.++..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566666777777777777777777665 3233 4667777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 009663 467 GELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~~~~~ 486 (529)
...|++++|+..+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 77788888877777776543
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=1.8e-07 Score=73.16 Aligned_cols=93 Identities=9% Similarity=-0.058 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-------hhHHHH
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG-------GYGIML 462 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l 462 (529)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|++.++++++++|++. .++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4445556666666666666666655 3334 455666666666666777777777776666655443 245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 009663 463 ANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 463 ~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666777777766666544
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=7.9e-07 Score=68.08 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGC 432 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 432 (529)
.+..+...+...|++++|...++..... .| +...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3344444444455555555555554432 22 3444444444444444444444444443 1122 344444444444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
...|++++|...++++.+.+|+++..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 444444444444444444444444444433
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=6e-07 Score=70.56 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
+...+..+...+.+.|++++|...|++. ...| +...+..+...+...|++++|+..++++.+..|+++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4678888999999999999999999987 5555 6888999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 009663 467 GELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+.|++++|...+++..+..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999987654
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=3.8e-07 Score=73.01 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=90.5
Q ss_pred CCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 009663 350 IRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVW 425 (529)
Q Consensus 350 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 425 (529)
..|+ ...+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|++. ...| +...+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 3443 344556677788899999999999998854 45 6788888999999999999999999987 4444 57788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
..+..++...|++++|+..|++++++.|+++........
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 889999999999999999999999999988776655433
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=8.3e-07 Score=75.77 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC---CC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC----c
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-KI---EP-D----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNN----G 456 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~----~ 456 (529)
.+..+...|...|++++|.+.+++. .. .+ + ...+..+...+...|++++|...++++.+.. ..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4444445555555555555554443 00 11 1 2334455555666666666666666665422 111 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.++..++.++...|++++|...+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 223555666666666666666665554
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=6.6e-07 Score=69.83 Aligned_cols=110 Identities=10% Similarity=-0.056 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNG 431 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 431 (529)
..+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45666777788889999999999888854 44 5788888899999999999999999887 4445 57888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 009663 432 CKIYGRTDFAEFAVKKLIEID------PNNGGYGIMLANIYG 467 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 467 (529)
+...|++++|+..++++++++ |+++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999998 877777777766543
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.8e-06 Score=69.34 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWG 426 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 426 (529)
+...+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 45667777778888888888888888887 33565 567777888888888888888888776 3344 567777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
.+..++...|++++|...++++.+.+|+++.++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88888888888888888888888888888777777666543
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=1.8e-06 Score=66.06 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888888999999999999887 3334 67788888888899999999999999999999988889999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCC
Q 009663 468 ELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 468 ~~g~~~~a~~~~~~~~~~~~ 487 (529)
..|++++|...+++..+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999998877654
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=1.7e-06 Score=78.81 Aligned_cols=206 Identities=7% Similarity=0.005 Sum_probs=120.2
Q ss_pred CCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhH---HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCc---
Q 009663 41 QSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYL---YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQ--- 114 (529)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--- 114 (529)
..|+..+...+...+.... +. ++..-...+... +...+..+... |++++|...+++..+.....|+.
T Consensus 42 ~~~~~~~l~~i~~~l~~~~---~~---~~~~~~~~~~~~~~~l~~~i~~~~~~-~~y~~a~~~~~~~l~~~~~~~~~~~~ 114 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPI---IH---FYEVLIYSDIERKKQFKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQF 114 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCT---HH---HHHTTTSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCH---HH---HhCCCCCCcchhHHHHHHHHHHHHHH-hhHHHHHHHHHHHhccccCChHHHHH
Confidence 4677777777777776532 22 333333333333 33346677788 99999999999998753212221
Q ss_pred -chHHHHHHhCccCCCchHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHH
Q 009663 115 -FIYPHVLKSCPDVLESRGTKMVHTQIVKSGFE-QY----PVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMI 188 (529)
Q Consensus 115 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll 188 (529)
..+..+...+...+++++|...++.+.+.... ++ ..+++.+..+|...| ++++|...|++..
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al----------- 182 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG-YLKKGIDLFEQIL----------- 182 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH-----------
Confidence 12334566677788999999999999874322 22 236788888888888 8888888876653
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcc-cCCCCCC-HHHHHHHHHHhhcc
Q 009663 189 SGYTRVGDIKNAASLFDSMPDR---DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEV-SDNIRPN-QVTLVCALSAIGHT 263 (529)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~p~-~~~~~~ll~~~~~~ 263 (529)
+.++..... ...+|..+...|.+.|++++|+..+++..... ..+..+. ...+..+..++...
T Consensus 183 -------------~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 183 -------------KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp -------------HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred -------------HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 222222111 12245555566666666666666655543210 0011111 44555666666666
Q ss_pred CC-chHHHHHHHHHHH
Q 009663 264 GM-LQLGKVIHGYVYR 278 (529)
Q Consensus 264 ~~-~~~a~~~~~~~~~ 278 (529)
|+ .++|...++++..
T Consensus 250 g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 250 EYEEAEIEDAYKKASF 265 (293)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 63 3666666665553
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.55 E-value=7.5e-07 Score=75.90 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..|++++++.|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 57777888888999999999988887 3344 678888999999999999999999999999999999999999999999
Q ss_pred cCCHHHHH-HHHHHHhhCCC
Q 009663 469 LGKWDEVR-KVRKMLKDRNA 487 (529)
Q Consensus 469 ~g~~~~a~-~~~~~~~~~~~ 487 (529)
.|+.+++. ..++.+...+.
T Consensus 169 ~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 88888877 55666655443
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.1e-06 Score=70.48 Aligned_cols=98 Identities=16% Similarity=0.064 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+..++...|++++|+..++++.+..|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5678888999999999999999999988 66787 678888899999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC
Q 009663 464 NIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 464 ~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999987653
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=1.1e-06 Score=68.01 Aligned_cols=97 Identities=25% Similarity=0.297 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...+..+...+...|++++|.++++++ ... .+..++..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999988 333 467888999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCC
Q 009663 468 ELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 468 ~~g~~~~a~~~~~~~~~~~ 486 (529)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987654
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.53 E-value=5.4e-07 Score=71.89 Aligned_cols=91 Identities=16% Similarity=0.081 Sum_probs=68.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC
Q 009663 395 CLVDLLGRAGRFEEALEVVKGM-KIEPD-------------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEI-------DP 453 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p 453 (529)
.....+.+.|++++|+..|++. .+.|+ ...|..+..++.+.|++++|+..+++++++ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344445555555555555544 22222 337888888899999999999999999998 99
Q ss_pred CCchhH----HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 454 NNGGYG----IMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 454 ~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
++...| ...+.++...|++++|+..|++..+.
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 988888 99999999999999999999888654
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=8.2e-07 Score=75.82 Aligned_cols=155 Identities=10% Similarity=0.002 Sum_probs=98.2
Q ss_pred hCCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhccc-CCCCC-CHHHHHHHHHHHhCCCcHH
Q 009663 297 KCGSLKEARR---AFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQD-HNIRP-DGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 297 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~ 371 (529)
..|++++|.+ .+..........+..+...+...|++++|...+++...... .+..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332222344666677777777777777777776654211 11222 2345666777778888888
Q ss_pred HHHHHHHHhHHh---cCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCH
Q 009663 372 QGRAYFKLMTKT---YRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM----KIEPD----EVVWGSLLNGCKIYGRT 438 (529)
Q Consensus 372 ~a~~~~~~~~~~---~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 438 (529)
+|...+++..+. .+-.| ....+..+...+...|++++|...+++. ....+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888876643 12111 1345677788888888888888888765 11122 23456777788889999
Q ss_pred HHHHHHHHHHHhc
Q 009663 439 DFAEFAVKKLIEI 451 (529)
Q Consensus 439 ~~A~~~~~~~~~~ 451 (529)
++|...++++.++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988874
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=1.3e-06 Score=71.88 Aligned_cols=96 Identities=8% Similarity=0.068 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445555666666666666666666665 3333 45566666666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 009663 468 ELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 468 ~~g~~~~a~~~~~~~~~~ 485 (529)
..|++++|+..+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666666544
No 158
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=1.2e-06 Score=72.99 Aligned_cols=128 Identities=9% Similarity=0.054 Sum_probs=100.4
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCC
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDL-LGRAGR 405 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~ 405 (529)
...|++++|+..+++... . .+.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ |...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~---~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR---A-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHH---H-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHH---h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCC
Confidence 456788999999988865 2 23356788888889999999999999999988642 2357788888888 788999
Q ss_pred h--HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 406 F--EEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 406 ~--~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
+ ++|...+++. ...| +...+..+...+...|++++|...++++.+..|+++....
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 8 9999999987 4445 5788888999999999999999999999999998765443
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=1.3e-05 Score=73.31 Aligned_cols=32 Identities=22% Similarity=0.041 Sum_probs=23.6
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 453 PNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 453 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+.++.+...++.+|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34666777777888888888888888877753
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=1.9e-06 Score=67.33 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++.+..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 3344 6888899999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 009663 467 GELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~~~~~ 486 (529)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988764
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.44 E-value=1e-06 Score=68.98 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=44.1
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEPQ-I---EHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNG 431 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 431 (529)
...+...|++++|...|+.+.+. .|+ . ..+..+..++.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33444555555555555555533 222 1 24444444555555555555555444 21221 3334444444
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchh
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNGGY 458 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 458 (529)
+...|++++|...++++.+..|+++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 555555555555555555555544333
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.44 E-value=0.0002 Score=65.51 Aligned_cols=232 Identities=12% Similarity=0.035 Sum_probs=161.9
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCH-HHHHHHHHHhhccC-CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ-VTLVCALSAIGHTG-MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGK 297 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (529)
....+.+..++|++++..+.. +.|+. ..++.--.++...| .+++++.+++.++...++ +..+|+.-..++..
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~-----~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVR-----MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHH-----hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 334445566789999998884 45544 44666666666667 588999999999887654 56667766666666
Q ss_pred C-C-CHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChh--------HHHHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 009663 298 C-G-SLKEARRAFDRNSKKR---LTSWNSMINSFALHGQSE--------NSICVFEEMMRCQDHNIRPDGVTFISLLNAC 364 (529)
Q Consensus 298 ~-g-~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~ 364 (529)
. + ++++++++++++.+.+ ..+|+--.-.+.+.|.++ ++++.++++.+ .. .-|...|+.....+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HC-TTCHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hC-CCCHHHHHHHHHHH
Confidence 5 6 8889999999887654 446666555555555566 89999999875 32 23667787777777
Q ss_pred hCCCc-------HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhC
Q 009663 365 THGGL-------VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRF--------------------EEALEVVKGM 416 (529)
Q Consensus 365 ~~~~~-------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~ 416 (529)
.+.+. ++++.+.++++... .| |...|+.+-..+.+.|+. .+..+...++
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 77765 68888888888854 55 678888877777777654 3444444444
Q ss_pred -CC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCchhHHHHHH
Q 009663 417 -KI-------EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI-EIDPNNGGYGIMLAN 464 (529)
Q Consensus 417 -~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 464 (529)
+. .++...+..+++.|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 21 3578888999999999999999999999997 578866666655443
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=2.1e-06 Score=83.61 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999887 4444 68889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHH-HHHHHhhCC
Q 009663 468 ELGKWDEVRK-VRKMLKDRN 486 (529)
Q Consensus 468 ~~g~~~~a~~-~~~~~~~~~ 486 (529)
+.|+++++.+ .+++|..+-
T Consensus 397 ~~~~~~~a~~~~~~~~f~k~ 416 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKKF 416 (457)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 9999988874 466665443
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.42 E-value=1.4e-06 Score=85.21 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=49.4
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAG 404 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 404 (529)
.+.|++++|++.|++..+ . .| +...+..+..++.+.|++++|...++++.+. .| +...+..+..+|.+.|
T Consensus 17 ~~~g~~~~A~~~~~~Al~---~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIE---L--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp TTTTCHHHHHHHHHHHHH---H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHH---h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 344555555555555443 1 12 2344445555555555555555555555422 23 3445555555555555
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 009663 405 RFEEALEVVKGM-KIEP-DEVVWGSLLNG--CKIYGRTDFAEFAVK 446 (529)
Q Consensus 405 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 446 (529)
++++|.+.|++. ...| +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555544 2222 12222223322 444555555555555
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=3.2e-06 Score=66.83 Aligned_cols=112 Identities=12% Similarity=-0.034 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 009663 352 PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSL 428 (529)
Q Consensus 352 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 428 (529)
.+...+..+...+...|++++|...|+...+. .| +...+..+..+|...|++++|...+++. ...| +...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45677888888888899999999999988754 34 5778888899999999999999999887 3344 57888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPN-----NGGYGIMLANIY 466 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 466 (529)
..++...|++++|+..++++.+..|+ +..+...+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998886 455555554443
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.41 E-value=1.2e-06 Score=68.52 Aligned_cols=104 Identities=12% Similarity=0.073 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----C----HHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP----D----EVV 424 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~ 424 (529)
..+..+...+.+.|++++|+..|+++.+. .| +...|..+..+|.+.|++++|++.+++. .+.| + ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34566777788888888888888888754 45 5777888888888888888888888776 2222 2 246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
|..+..++...|++++|++.|+++++..| ++.....+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHH
Confidence 77788889999999999999999999888 55544433
No 167
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=5.2e-06 Score=68.05 Aligned_cols=127 Identities=13% Similarity=0.001 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.|..+...+...|++++|...|++... . .+.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~---~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a 88 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE---L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH---h-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 566677778888888888888888765 2 22356677778888888899999999998887541 23577888888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEP-DEVVWGS--LLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.++...|++++|...|++. ...| +...+.. .+..+...|++++|+..+.+...
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8889999999999998887 3334 4445533 33347778899999998887765
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.38 E-value=1e-06 Score=86.22 Aligned_cols=117 Identities=9% Similarity=0.042 Sum_probs=100.3
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 437 (529)
...+...|++++|...|+++.+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...+..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566789999999999999865 55 5889999999999999999999999988 5555 67889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCHHHHHHHHH
Q 009663 438 TDFAEFAVKKLIEIDPNNGGYGIMLANI--YGELGKWDEVRKVRK 480 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 480 (529)
+++|++.++++++..|++...+..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999888 888899999999988
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.38 E-value=4e-07 Score=70.04 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHHhHHhcCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRI-EP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAE 442 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 442 (529)
.|++++|+..|+++.+. +. .| +...+..+..+|...|++++|...|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555555556555521 10 12 2344555555555555555555555554 2223 3444555555555555555555
Q ss_pred HHHHHHHhcCCCCch
Q 009663 443 FAVKKLIEIDPNNGG 457 (529)
Q Consensus 443 ~~~~~~~~~~p~~~~ 457 (529)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 555555555554443
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.38 E-value=6.5e-06 Score=64.24 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM-KIEPD-E---VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN---GGYGIMLANI 465 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 465 (529)
..+...+...|++++|...|+++ ...|+ . ..+..+..++...|++++|+..++++.+..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34566778888888888888877 32333 2 467777888888888888888888888888887 6778888888
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 009663 466 YGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 466 ~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+...|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888887654
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=2.4e-06 Score=66.76 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN-------GGYGI 460 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 460 (529)
...+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++.+..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777778888888888888776 22 3367778888888888999999999999998887765 77888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 461 MLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++.++...|++++|...+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88999999999999999998887643
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.35 E-value=1.6e-06 Score=71.02 Aligned_cols=103 Identities=16% Similarity=0.027 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC------C---------CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYR------I---------EP-QIEHYGCLVDLLGRAGRFEEALEVVKGM- 416 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 416 (529)
...+......+.+.|++++|...|.+...... - .| +...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455666677777777777777777664200 0 11 1234455555555555555555555544
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009663 417 KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 417 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
.+.| +...|..+..++...|++++|+..|+++++++|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2223 344555555555555555555555555555555444
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=4e-06 Score=78.93 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=80.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
+...|..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..|++++++.|++..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4678888999999999999999999988 6566 5788999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHH
Q 009663 467 GELGKWDEVRKV 478 (529)
Q Consensus 467 ~~~g~~~~a~~~ 478 (529)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888877653
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.34 E-value=1.1e-06 Score=81.85 Aligned_cols=148 Identities=13% Similarity=0.021 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.+..+...+.+.|++++|+..|++... ..|+... +...++.+++...+ . ...|..+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~-----~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla 237 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA-----YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH-----HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHH
Confidence 566666677777788888887777754 3343321 22334444433222 1 13677888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCHHH
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY-GELGKWDE 474 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 474 (529)
.+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..+..+. ...+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999887 4445 6788888999999999999999999999999999888888888774 34567788
Q ss_pred HHHHHHHHhhCCCc
Q 009663 475 VRKVRKMLKDRNAY 488 (529)
Q Consensus 475 a~~~~~~~~~~~~~ 488 (529)
+...+++|......
T Consensus 318 a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 318 QKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------
T ss_pred HHHHHHHhhCCCCC
Confidence 88888888765543
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=2.4e-06 Score=65.96 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=76.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCK 433 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 433 (529)
+..+...+.+.|++++|...|+++.+. .| +...|..+..++...|++++|+..|++. .+.| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445566777889999999999998854 45 6788888889999999999999999887 5555 5778888888999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCc
Q 009663 434 IYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 434 ~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
..|++++|+..++++++.+|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999888653
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=2.9e-06 Score=66.25 Aligned_cols=111 Identities=7% Similarity=-0.057 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KI----EPD----EVVW 425 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 425 (529)
..+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...+++. .. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 445666667777788888888888777541 235667777788888888888888888776 21 222 6678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
..+..++...|++++|...++++.+..| ++.....+..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 8888889999999999999999999888 67766666655443
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=4.4e-06 Score=63.11 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP---DEVVWGSLLN 430 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 430 (529)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 445667777888888888888888887541 235677888888888899999998888877 3344 4778888888
Q ss_pred HHHHc-CCHHHHHHHHHHHHhcCCCCc
Q 009663 431 GCKIY-GRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 431 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 456 (529)
.+... |++++|.+.++++....|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 89999 999999999999999888654
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=4.1e-06 Score=75.69 Aligned_cols=109 Identities=10% Similarity=-0.113 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLL 429 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 429 (529)
+...+..+...+...|++++|...|+++.+. .| +...|..+..+|.+.|++++|...+++. ...| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566777888888999999999999998864 45 6788889999999999999999999887 5566 577888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
.++...|++++|+..|+++.+++|+++..+...+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH
Confidence 99999999999999999999988876544443333
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=7.2e-06 Score=79.32 Aligned_cols=165 Identities=6% Similarity=-0.136 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH----HHHHHHHHHhCCCcHHHHHHHHHHhHHh---cCCCCC-
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV----TFISLLNACTHGGLVEQGRAYFKLMTKT---YRIEPQ- 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~- 389 (529)
++..+...|...|++++|.+++..+... .+..++.. ..+.+-..+...|+++.|..+++..... .+..+.
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEY--MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHH--HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 3566777888888888888888776542 11112221 2233334455678889998888776532 122332
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC---
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-----K--IEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID---PNN--- 455 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~--- 455 (529)
..++..+...|...|++++|..++++. + ..+ ...++..++..|...|++++|...++++.... +++
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 567788899999999999999998876 1 122 25577788888999999999999999988743 222
Q ss_pred -chhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 456 -GGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 456 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
..++..++..+...|++++|...+.+..+
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 24566677778888999999988777753
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.29 E-value=3.1e-06 Score=69.35 Aligned_cols=63 Identities=16% Similarity=0.045 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
..|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..+++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 345555555555666666666666666666655566666666666666666666665555444
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.28 E-value=3.1e-06 Score=68.95 Aligned_cols=130 Identities=20% Similarity=0.052 Sum_probs=86.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGM----KIEPD----EV 423 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 423 (529)
++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555566666666666666665532110111 235666777777788888877777765 11111 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDP------NNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.+..+...+...|++++|...++++.+..+ .....+..++.++...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566777788889999999999888887431 12456778888899999999999998887643
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.26 E-value=0.00013 Score=66.53 Aligned_cols=229 Identities=11% Similarity=0.069 Sum_probs=122.7
Q ss_pred HhCCChh-HHHHHHHHhhhcccCCCCCCHHH-HHHHHHHhhccCC----------chHHHHHHHHHHHhCCCCCccHHHH
Q 009663 223 TQNGLFS-DAISFFRRMGMEVSDNIRPNQVT-LVCALSAIGHTGM----------LQLGKVIHGYVYRNGLDLDSFISNA 290 (529)
Q Consensus 223 ~~~g~~~-~A~~~~~~m~~~~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ 290 (529)
.+.|.++ +|++++..+. ...|+..| ++.--.++...+. +++++.+++.+....+. +..+|+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L-----~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQIL-----GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHH-----TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHH-----HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 3455554 6788888777 45665443 3332222222221 45667777777766543 5556666
Q ss_pred HHHHHHhCC--CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC-hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 009663 291 LIDMYGKCG--SLKEARRAFDRNSK---KRLTSWNSMINSFALHGQ-SENSICVFEEMMRCQDHNIRPDGVTFISLLNAC 364 (529)
Q Consensus 291 l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~ 364 (529)
-..++...| .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.+.++.+ .. +-|...|+.....+
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~---~~-p~N~SAW~~R~~ll 189 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RN-FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HC-SCCHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---HC-CCCHHHHHHHHHHH
Confidence 555666666 36777777766543 344566665556666666 4677777777764 22 22444444433333
Q ss_pred hCC--------------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc-----------CChHHHHHHHHhC-C
Q 009663 365 THG--------------GLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA-----------GRFEEALEVVKGM-K 417 (529)
Q Consensus 365 ~~~--------------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~ 417 (529)
... +.++++.+.+...... .| |...|+.+-..+.+. +.++++++.++++ .
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 222 3466677777766643 44 455665544444443 3455666666665 4
Q ss_pred CCCCH-HHHHHHHH---HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 418 IEPDE-VVWGSLLN---GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 418 ~~p~~-~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
..||. .++..++. +....|..++....+.++.+++|.....|..+..
T Consensus 267 ~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 267 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 44542 22211111 1112455666666777777777655555554433
No 183
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=1.6e-05 Score=73.91 Aligned_cols=126 Identities=8% Similarity=-0.019 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC----------------HHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD----------------GVTFISLLNACTHGGLVEQGRAYFKLM 380 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 380 (529)
..|..+...+.+.|++++|+..|++..+ . .|+ ...|..+..++.+.|++++|...++++
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVS---W--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---H--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---H--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677777888888888888888888865 2 232 477888888999999999999999999
Q ss_pred HHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 009663 381 TKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFA-EFAVKKLIE 450 (529)
Q Consensus 381 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 450 (529)
.+. .| +...|..+..+|...|++++|...|++. .+.| +...+..+..++...|++++| ...++++..
T Consensus 223 l~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 223 LEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 854 45 6888999999999999999999999987 4455 577888888889999999888 456666654
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.24 E-value=1.3e-06 Score=67.06 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=67.4
Q ss_pred hcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 009663 402 RAGRFEEALEVVKGM-KI---EP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 402 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
..|++++|+..|++. .. .| +...+..+..++...|++++|+..++++++.+|+++.++..++.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 457888888888887 54 24 45677888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC
Q 009663 477 KVRKMLKDRN 486 (529)
Q Consensus 477 ~~~~~~~~~~ 486 (529)
..+++..+..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9988887653
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00026 Score=64.51 Aligned_cols=217 Identities=12% Similarity=0.046 Sum_probs=150.8
Q ss_pred ccCCc-hHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCC----------HHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 009663 262 HTGML-QLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS----------LKEARRAFDRNSK---KRLTSWNSMINSFA 327 (529)
Q Consensus 262 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 327 (529)
+.|.+ ++|+.+++.++..++. +..+++.--.++...+. +++++.+++.+.. .+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44554 4789999999887653 33445544333333332 5778888877653 45668887777777
Q ss_pred HcCC--hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCc-HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 009663 328 LHGQ--SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGL-VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA 403 (529)
Q Consensus 328 ~~~~--~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 403 (529)
..++ +++++.++.++.+ . -+-|...|+.-.-.+...|. ++++.+.++.+.+. .| |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~---~-dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 120 RLPEPNWARELELCARFLE---A-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHH---H-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHH---h-CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHh
Confidence 8774 8899999999975 2 23366677766666666777 68999999999865 44 677887776666655
Q ss_pred --------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCc
Q 009663 404 --------------GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY-----------GRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 404 --------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~ 456 (529)
+.++++++.+... ...| |...|+.+-..+.+. +.++++++.++++.++.|++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 4578888888877 4455 677776655555444 457899999999999999886
Q ss_pred hhHHHHHHHH---HhcCCHHHHHHHHHHHhhCC
Q 009663 457 GYGIMLANIY---GELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 457 ~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~ 486 (529)
..+..++... ...|..+++...+.++.+-.
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 5554443322 24678889999999887543
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.22 E-value=1.2e-05 Score=78.07 Aligned_cols=129 Identities=11% Similarity=0.035 Sum_probs=100.5
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcC--CCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYR--IEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM---------KIEPD-EVVWG 426 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 426 (529)
.+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999998888764311 112 2567899999999999999999988876 23343 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCchhH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCccCC
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIE-----IDPNNGGYG---IMLANIYGELGKWDEVRKVRKMLKDRNAYKTP 491 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 491 (529)
.|...|...|++++|+.+++++++ ++|++|.+. ..+..++...|++++|..++.++++......|
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999987 678776654 56777888999999999999999886654444
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=2.7e-06 Score=67.85 Aligned_cols=105 Identities=18% Similarity=0.097 Sum_probs=81.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CC----
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-------------IEHYGCLVDLLGRAGRFEEALEVVKGM-KI---- 418 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---- 418 (529)
+......+.+.|++++|...|++..+- .|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 444455566677888888888777643 333 227888888889999998888888776 44
Q ss_pred ---CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 419 ---EPD-EVVW----GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 419 ---~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
.|+ ...| .....++...|++++|+..|++++++.|++.....-+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 885 5677 889999999999999999999999999988777665544
No 188
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.20 E-value=1.5e-05 Score=67.71 Aligned_cols=96 Identities=15% Similarity=-0.083 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-D----------------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
..+..+...+...|++++|...|++. ...| + ...+..+..++...|++++|+..++++++.+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555566666667777776666655 2222 1 3678888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 453 PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 453 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
|+++.++..++.+|...|++++|+..+++..+..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999987654
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=0.00048 Score=66.36 Aligned_cols=167 Identities=7% Similarity=-0.125 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCH----HHHHHHHHHhhccCCchHHHHHHHHHHHh----CCCC-C
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ----VTLVCALSAIGHTGMLQLGKVIHGYVYRN----GLDL-D 284 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 284 (529)
++..++..|...|++++|.+.+..+.... +.+ ++. ...+.+-..+...|+.+.+..++...... +..+ .
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYM-MQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 35667788888888888888887765321 011 121 12223333455668888888888776542 2221 2
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcC----C----C-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-C-
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNS----K----K-RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-D- 353 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~- 353 (529)
..++..+...|...|++++|..+++++. . + ....+..++..|...|++++|..++++..........| .
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 3467778889999999999988887542 1 1 12378888899999999999999998876522222222 1
Q ss_pred -HHHHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 354 -GVTFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 354 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
...+..+...+...|++++|...|.+...
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23456666777888999999888877654
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=1e-06 Score=66.82 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=74.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN------GGYGI 460 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 460 (529)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777778888888888888888877 3344 67888888999999999999999999999999987 67777
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 009663 461 MLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~ 481 (529)
.++.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 788888887777776655543
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=7.6e-05 Score=74.30 Aligned_cols=167 Identities=10% Similarity=-0.047 Sum_probs=127.4
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC----------hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCC
Q 009663 301 LKEARRAFDRNSK---KRLTSWNSMINSFALHGQ----------SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG 367 (529)
Q Consensus 301 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~ 367 (529)
.++|++.++++.. .+..+|+.--.++...|+ ++++++.++.+.+ . -+-+...|..-...+.+.
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~-~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---V-NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---H-CTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---h-CCCCHHHHHHHHHHHHHc
Confidence 3455666665543 233455555555555555 7889999998875 2 233667777777777888
Q ss_pred C--cHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc------
Q 009663 368 G--LVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAG-RFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY------ 435 (529)
Q Consensus 368 ~--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 435 (529)
+ +++++...++++.+. .| +...|+.-..++.+.| .++++++.++++ ...| +...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 679999999999865 45 6788888888888888 899999999888 5566 678888887776663
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 009663 436 --------GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474 (529)
Q Consensus 436 --------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 474 (529)
+.++++++.+.++...+|++.++|..+...+.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=5.1e-06 Score=77.29 Aligned_cols=117 Identities=12% Similarity=-0.016 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCK 433 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 433 (529)
...+..+...+.+.|++++|...|+++... .|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 345666677777888888888888887743 343221 223344444443332 137788889999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 434 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+.|++++|+..++++++++|++..++..++.+|...|++++|+..|++..+...
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999876653
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.13 E-value=1.6e-05 Score=58.83 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+...+..+...+...|++++|+..|+++++.+|+++.++..++.+|...|++++|+..+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57778888888999999999999999999999998999999999999999999999999887654
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.12 E-value=1e-05 Score=61.66 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+...+..+...+...|++++|+..++++++.+|++...+..++.+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666666666666666666666666554
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=2.2e-05 Score=63.67 Aligned_cols=135 Identities=19% Similarity=0.140 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC--HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hh
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IE 391 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 391 (529)
++..+...+...|++++|+..+++..+..+....+. ...+..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555566666666666666666544111101111 134556666677777777777777776542111111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-------KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|.+.++++.++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5667777778888888888777765 1111 13456777788888999999999999888753
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.05 E-value=2.8e-05 Score=56.08 Aligned_cols=81 Identities=27% Similarity=0.335 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456677777788888888888888776 3333 57778888888889999999999999999999988888888888876
Q ss_pred hcC
Q 009663 468 ELG 470 (529)
Q Consensus 468 ~~g 470 (529)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.98 E-value=4.7e-06 Score=66.30 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----------CHHHHHHHHHHHhhCC
Q 009663 438 TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG-----------KWDEVRKVRKMLKDRN 486 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~ 486 (529)
+++|+..|+++++++|++..++..++.+|...| ++++|+..|++..+.+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 457777777777777777777777777776653 6777777777666554
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.98 E-value=2.6e-05 Score=75.84 Aligned_cols=98 Identities=8% Similarity=-0.073 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----------------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
...+..+...|.+.|++++|...|++. .+.|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 334555555666666666666666555 22221 5788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 453 PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 453 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|++..++..++.+|...|++++|+..|+++.+...
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999987654
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.97 E-value=6.2e-05 Score=54.44 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 419 EPDEVVWGSLLNGCKIYGR---TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 419 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
+.++..+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577888888888765554 799999999999999999999999999999999999999999999987664
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=2.9e-05 Score=73.05 Aligned_cols=113 Identities=13% Similarity=-0.013 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEP-DEVVWGSLLNGCK 433 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 433 (529)
..+..+...+.+.|++++|...|+++.+. .+.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 34555566666667777777777666532 0100 0000111110 1233 4677888999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 434 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+.|++++|+..++++++++|+++.++..++.+|...|++++|+..+++..+..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987654
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=3.4e-05 Score=61.35 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=79.0
Q ss_pred CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCh----------HHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRF----------EEALEVVKGM-KIEP-DEVVWGSLLNGCK 433 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 433 (529)
.+.+++|...++...+. .| +...|..+..++...+++ ++|+..|++. .+.| +...|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 35677777777777744 45 577777777777776654 5888888877 5566 4678888888887
Q ss_pred Hc-----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 434 IY-----------GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 434 ~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.. |++++|++.|+++++++|++..+...+- ..++|.++.-.+...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHSSS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCccccccc
Confidence 76 4899999999999999998765555442 23556666655555543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=6.5e-05 Score=56.49 Aligned_cols=67 Identities=15% Similarity=-0.065 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+...+..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|+..+++..+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4667888899999999999999999999999999999999999999999999999999999987654
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00031 Score=55.40 Aligned_cols=112 Identities=8% Similarity=-0.139 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEF 443 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 443 (529)
+++++|..+|++..+. | .|.. . |...|...+.+++|.++|++.-..-+...+..+...|.. .+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3556666666666543 3 2222 2 555566666666666666665212456666666666666 667777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 009663 444 AVKKLIEIDPNNGGYGIMLANIYGE----LGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 444 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 487 (529)
+|+++.+. .++.....|+.+|.. .++.++|...+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777665 356677777777777 6777777777777776654
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.00019 Score=51.53 Aligned_cols=66 Identities=27% Similarity=0.275 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+...+..+...+...|++++|+..++++.+..|+++.++..++.++.+.|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356778888899999999999999999999999999999999999999999999999999987653
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.66 E-value=0.00048 Score=66.85 Aligned_cols=125 Identities=12% Similarity=-0.046 Sum_probs=85.0
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCC----HHHHHHHHHHHhCCCcHHHHHHHHHHhHHh----cCC-CC-ChhHHHH
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPD----GVTFISLLNACTHGGLVEQGRAYFKLMTKT----YRI-EP-QIEHYGC 395 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p-~~~~~~~ 395 (529)
+...|++++|+.++++..+....-+.|+ ..+++.|...|...|++++|..++++...- +|- .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456677777777666655333333333 346777888888888888888888776532 222 22 2557888
Q ss_pred HHHHHHhcCChHHHHHHHHhC--------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 396 LVDLLGRAGRFEEALEVVKGM--------K-IEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~--------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
|...|...|++++|+.++++. | -.|+ ..+...+..++...+.+++|+..|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999988888776 2 2232 23445566677788899999999998876
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.65 E-value=0.00031 Score=53.22 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=63.7
Q ss_pred HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 372 QGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
.|...|+++.+ ..| +...+..+...|...|++++|...|++. ...| +...|..+..++...|++++|...|+++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777763 345 5778888888899999999999999887 3344 5778888888999999999999999999
Q ss_pred HhcCCC
Q 009663 449 IEIDPN 454 (529)
Q Consensus 449 ~~~~p~ 454 (529)
.+..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 987764
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.61 E-value=0.00085 Score=66.74 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=120.7
Q ss_pred HcC-ChhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhCCCc----------HHHHHHHHHHhHHhcCCCC-ChhHHH
Q 009663 328 LHG-QSENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTHGGL----------VEQGRAYFKLMTKTYRIEP-QIEHYG 394 (529)
Q Consensus 328 ~~~-~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p-~~~~~~ 394 (529)
+.| ..++|++.++++.. ..|+. ..|+.--.++...|+ ++++...++.+.+. .| +...|.
T Consensus 40 ~~~~~~eeal~~~~~~l~-----~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~ 111 (567)
T 1dce_A 40 QAGELDESVLELTSQILG-----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWH 111 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH-----HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 344 44688999999975 44544 445554444544555 89999999999865 45 678888
Q ss_pred HHHHHHHhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 395 CLVDLLGRAG--RFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYG-RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 395 ~l~~~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
.-..++.+.| +++++++.++++ ...| +...|+.-...+.+.| .++++++.++++++.+|.+.++|...+.++.+.
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 8888888999 779999999998 4444 7889999888888889 899999999999999999999999999988774
Q ss_pred --------------CCHHHHHHHHHHHhhCCC
Q 009663 470 --------------GKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 470 --------------g~~~~a~~~~~~~~~~~~ 487 (529)
+.++++++.+++......
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999888876543
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.48 E-value=0.00018 Score=52.84 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=59.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 396 LVDLLGRAGRFEEALEVVKGM-KIEP-DEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
....+.+.|++++|.+.|++. ...| +.. .+..+..++...|++++|+..|+++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677888888888888877 3345 566 78888888999999999999999999999988776633 445
Q ss_pred HHHHHHHHHH
Q 009663 473 DEVRKVRKML 482 (529)
Q Consensus 473 ~~a~~~~~~~ 482 (529)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5666666444
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.45 E-value=0.00064 Score=64.84 Aligned_cols=105 Identities=18% Similarity=0.043 Sum_probs=76.9
Q ss_pred hcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---hhHHHHH
Q 009663 402 RAGRFEEALEVVKGM---------KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIE-----IDPNNG---GYGIMLA 463 (529)
Q Consensus 402 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~ 463 (529)
..|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++ .+|+++ ..++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356778887777665 12232 46788899999999999999999999987 456655 4677889
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHH
Q 009663 464 NIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALES 524 (529)
Q Consensus 464 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (529)
.+|..+|++++|..++++..+--.. ..-.+||...++.+.|++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHHC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHhc
Confidence 9999999999999999988654221 112357777777766553
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.44 E-value=0.003 Score=49.56 Aligned_cols=112 Identities=11% Similarity=-0.084 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCC
Q 009663 330 GQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR----AGR 405 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 405 (529)
+++++|+.+|++..+ .| .|+.. +...|...+.+++|..+|++..+. -++..+..|...|.. .++
T Consensus 9 ~d~~~A~~~~~~aa~---~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 9 KDLKKAIQYYVKACE---LN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHH---TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHc---CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCcc
Confidence 467899999999887 66 34443 666777778889999999998754 467788888888888 889
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 009663 406 FEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 406 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 453 (529)
+++|.++|++.-..-++..+..+...|.. .+++++|..+|+++.+.+.
T Consensus 77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999988223578888888888888 8999999999999998753
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.41 E-value=0.00052 Score=50.22 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=55.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGG-YGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|+..+++..+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 456678899999999999999999999999 999999999999999999999999987654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.33 E-value=0.0015 Score=62.23 Aligned_cols=96 Identities=14% Similarity=0.003 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHhHHhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTY--RIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM---------KIEPD-EVVWGSLL 429 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 429 (529)
..|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888887765421 1122 2467888899999999999998888776 23343 45688899
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-----cCCCCchhHHH
Q 009663 430 NGCKIYGRTDFAEFAVKKLIE-----IDPNNGGYGIM 461 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 461 (529)
..|...|++++|+.+++++++ .+|++|.+-..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999987 57877766543
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.33 E-value=0.00037 Score=51.27 Aligned_cols=65 Identities=17% Similarity=0.014 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
+...+..+..+|...|++++|...|++. ...| +...|..+..++...|++++|++.+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4667777777888888888888888776 3344 466777788888888888888888888887654
No 214
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.29 E-value=0.1 Score=52.01 Aligned_cols=115 Identities=9% Similarity=-0.006 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCHH--HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 009663 331 QSENSICVFEEMMRCQDHNIRPDGV--TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEE 408 (529)
Q Consensus 331 ~~~~a~~~~~~m~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 408 (529)
+.+.|...+....+ ...+.+... ....+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 229 d~~~A~~~~~~~~~--~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 229 DAENARLMIPSLAQ--AQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp CHHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHhhhh--ccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 55666666666543 022222211 1222222333334234445555544322 2333233333344445677777
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 409 ALEVVKGMKIEP--DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 409 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
|...|+.|...+ ...-..=+..++...|+.++|..+|+++..
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777777663222 122112233445566777777777666653
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.28 E-value=0.009 Score=52.35 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=72.4
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CCHHH
Q 009663 406 FEEALEVVKGM-KIEPD---EVVWGSLLNGCKIY-----GRTDFAEFAVKKLIEIDPNN-GGYGIMLANIYGEL-GKWDE 474 (529)
Q Consensus 406 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 474 (529)
...|...+++. .+.|+ ...|..+...|... |+.++|.+.|+++++++|+. ...+...+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45667777766 66776 56788888888884 99999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHhhCCCccCCcc
Q 009663 475 VRKVRKMLKDRNAYKTPGC 493 (529)
Q Consensus 475 a~~~~~~~~~~~~~~~~~~ 493 (529)
+.+.+++.........|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999998887755653
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.26 E-value=0.0031 Score=60.22 Aligned_cols=101 Identities=16% Similarity=0.010 Sum_probs=73.7
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTY--RIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM---------KIEPD-EVV 424 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 424 (529)
+..+...|++++|...+++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888776431 1122 2457788888898999999988888766 23333 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCchhHHH
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIE-----IDPNNGGYGIM 461 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 461 (529)
++.|...|...|++++|+.+++++++ .+|++|.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 78888889999999999999999887 57877766654
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.23 E-value=0.0017 Score=61.95 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---hh
Q 009663 397 VDLLGRAGRFEEALEVVKGM-K-----IEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIE-----IDPNNG---GY 458 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~-----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~ 458 (529)
+..+.+.|++++|+.++++. . +.|+ ..+++.++.+|...|++++|+.+++++++ .+|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566889999999999866 1 2332 45788899999999999999999999987 456655 46
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHHH
Q 009663 459 GIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMV 526 (529)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (529)
+..|+.+|..+|++++|..++++..+--. ...-.+||...+++..+.+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHH
Confidence 77899999999999999999999865321 111236888888877776643
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.0099 Score=54.42 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=49.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 387 EPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
+.++.+|..+...+...|++++|...++++ .+.|+...|..+...+.-.|++++|.+.++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 335667777666666677777777777776 445776666666677777778888888887777777744
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.011 Score=54.16 Aligned_cols=116 Identities=9% Similarity=0.056 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh---cC--------ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGR---AG--------RFEEALEVVKGM-KIEPDEVVWGSLLNGCKIY 435 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g--------~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 435 (529)
+..+|..+|+++.+. .|+ ...|..+..+|.- .+ ....+.+-...+ ..+.++.++..+...+...
T Consensus 214 ~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 214 SLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 346677777777643 564 3444443333321 11 012233322333 2245788888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 436 GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
|++++|+..+++++.++| +...+..++.++.-.|++++|.+.+++....+..
T Consensus 291 gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999998 5677889999999999999999999998877653
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.01 E-value=0.026 Score=42.51 Aligned_cols=140 Identities=9% Similarity=0.043 Sum_probs=95.1
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRF 406 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 406 (529)
.-.|..++..++..+... . .+..-|+-+|--....-+-+-..++++.+-+-+.+ ..+|++
T Consensus 18 ildG~v~qGveii~k~~~---s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~Nl 77 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK---S---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNL 77 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH---H---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCT
T ss_pred HHhhhHHHHHHHHHHHcC---C---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcH
Confidence 345667777776666654 1 23334444444444444555555555555433222 234555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 407 EEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 407 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
......+-.++ .+...++.-++.+...|+-++-.+++..++...|-++.+...++.+|.+.|+..+|.+++++..++|
T Consensus 78 KrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 78 KSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 55555555543 3556677778889999999999999999766565589999999999999999999999999999999
Q ss_pred Cc
Q 009663 487 AY 488 (529)
Q Consensus 487 ~~ 488 (529)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 85
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.99 E-value=0.0034 Score=49.26 Aligned_cols=92 Identities=11% Similarity=-0.044 Sum_probs=68.6
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHH
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG---RFEEALEVVKGM-KIE-P--DEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 440 (529)
.....+.+.|.+..+. + .++..+...+..++++.+ +.+++..+|++. ... | ....+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 4456677777776543 3 367778888888888888 566888888887 323 5 35677777888899999999
Q ss_pred HHHHHHHHHhcCCCCchhHHH
Q 009663 441 AEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~ 461 (529)
|.+.++.+++++|++..+...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999977555443
No 222
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.92 E-value=0.00018 Score=67.19 Aligned_cols=251 Identities=13% Similarity=0.129 Sum_probs=172.5
Q ss_pred ChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHH
Q 009663 61 NLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQI 140 (529)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (529)
+++.|.+.-++...|. .|..|..+.... +...+|++.|- ...|+..|..++.++.+.|.+++-..++...
T Consensus 40 ~ldRa~eyA~~~n~p~--VWs~LgkAqL~~-~~v~eAIdsyI-------kA~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPA--VWSQLAKAQLQK-GMVKEAIDSYI-------KADDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CSTTTTTSSSSCCCCC--CSSSHHHHTTTS-SSCTTTTTSSC-------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred ccHHHHHHHHHhCCcc--HHHHHHHHHHcc-CchHHHHHHHH-------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444444444443443 477888888888 88888776552 2457788999999999999999999998877
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----------
Q 009663 141 VKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPD----------- 209 (529)
Q Consensus 141 ~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------- 209 (529)
.+..-.| ..=+.|+-+|++.+ +..+-.+++ ..||..-...+.+-|...|.++.|.-+|..+..
T Consensus 110 Rk~~ke~--~IDteLi~ayAk~~-rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 110 RKKARES--YVETELIFALAKTN-RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp STTCCST--TTTHHHHHHHHTSC-SSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred HHHhccc--ccHHHHHHHHHhhC-cHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 6654334 44467899999999 655433222 237777778888888899999988888887753
Q ss_pred -------------CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHH
Q 009663 210 -------------RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYV 276 (529)
Q Consensus 210 -------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 276 (529)
.++.||..+-.+|...+.+.-|.-.--.+. +.|| ....++.-|...|.+++.+.+++..
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI------vhad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHAD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH------CCSS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc------ccHH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 477899999999999999887755443332 1221 1223556678889999988888876
Q ss_pred HHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhh----cCCC-------ChhHHHHHHHHHHHcCChhHHHH
Q 009663 277 YRNGLDLDSFISNALIDMYGKCGSLKEARRAFDR----NSKK-------RLTSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~~~~~~a~~ 337 (529)
.... .....+|+-|.-.|++- ++++..+.++. +.-| ....|.-++-.|....++|.|..
T Consensus 256 lglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 6321 23566788888777764 45555555543 2222 23368888888888888887653
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.92 E-value=0.0081 Score=44.30 Aligned_cols=73 Identities=19% Similarity=0.068 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-----K----IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
.-...|...+.+.|+++.|..+|+.. + -.+...++..+..++.+.|+++.|...++++.++.|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445555566666666666666554 0 12346788889999999999999999999999999998777665
Q ss_pred HH
Q 009663 462 LA 463 (529)
Q Consensus 462 l~ 463 (529)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.76 E-value=0.04 Score=57.75 Aligned_cols=130 Identities=14% Similarity=0.035 Sum_probs=80.8
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChh
Q 009663 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSE 333 (529)
Q Consensus 254 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 333 (529)
..++..+.+.|.++.|.++.+.. ..-.......|+++.|.++.+.+. +...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 55555566667666666554211 112344566788898888877663 4568888999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVV 413 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 413 (529)
.|+++|.++.. |..+...+...|+.+...++-+..... | -++.-..+|.+.|++++|.+++
T Consensus 699 ~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 699 LAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHH
Confidence 99999988853 344444555566666655554444332 1 1223334455666766666666
Q ss_pred HhC
Q 009663 414 KGM 416 (529)
Q Consensus 414 ~~~ 416 (529)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.68 E-value=0.0082 Score=47.10 Aligned_cols=65 Identities=11% Similarity=-0.055 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 420 PDEVVWGSLLNGCKIYG---RTDFAEFAVKKLIEID-P-NNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
++..+...+..++++.+ +.++++.+++...+.+ | ++...+..++.+|.+.|++++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44555555555555544 3345555555555544 4 2344555555555555555555555555543
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.67 E-value=0.012 Score=42.24 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=51.8
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 388 PQIEHYGCLVDLLGRAGR---FEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 388 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.++..+..+..++...++ .++|..++++. ...| +......+...+...|++++|+..|+++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456777777777754444 68888888887 4455 5677777888888999999999999999998886
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.59 E-value=0.24 Score=51.81 Aligned_cols=127 Identities=14% Similarity=0.059 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHH
Q 009663 153 TALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAI 232 (529)
Q Consensus 153 ~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 232 (529)
..++..+.+.| ..+.|.++.+. . ..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|.
T Consensus 633 ~~~~~~l~~~~-~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~ 701 (814)
T 3mkq_A 633 TKIARFLEGQE-YYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAI 701 (814)
T ss_dssp HHHHHHHHHTT-CHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCC-ChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHH
Confidence 66667777778 78887776532 1 122334566788888888877764 5578888888888888888888
Q ss_pred HHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHH
Q 009663 233 SFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAF 308 (529)
Q Consensus 233 ~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (529)
+.|..+.. |..+...+...|+.+....+-+.+...|. ++....+|.+.|++++|.++|
T Consensus 702 ~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 702 EAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 88888752 22333344445665555555444444432 333444555566666666554
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.072 Score=42.92 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=70.4
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
.+.....|+++.|.++.+.+ .+...|..+.......|+++-|++.|.+... |..+.-.|...|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCCHH
Confidence 34556778888888887766 4566888888888888888888888888753 344444455567766
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 009663 372 QGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMK 417 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 417 (529)
...++-+....+ | -++.-...+.-.|+++++.++|.+.+
T Consensus 78 ~L~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 78 KLSKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 655554444332 1 23444555667788888888887765
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.41 E-value=0.02 Score=42.17 Aligned_cols=67 Identities=10% Similarity=-0.099 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID-------PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+...+..++..+...|+++.|...++++.+.. +..+.++..++.++.+.|++++|+.+++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 355667788899999999999999999998842 3456789999999999999999999999997654
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.65 Score=37.37 Aligned_cols=102 Identities=14% Similarity=0.039 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHH
Q 009663 191 YTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 270 (529)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+...
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCCHHHHH
Confidence 34456666666665554 3455666666666666666666666666541 222222333445544444
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 009663 271 VIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS 312 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 312 (529)
.+-+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44444333332 3444445555667777666665443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.59 E-value=0.13 Score=38.75 Aligned_cols=92 Identities=11% Similarity=-0.059 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHH
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEE---ALEVVKGM-KIE-P--DEVVWGSLLNGCKIYGRTDFA 441 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 441 (529)
....+.+-|...... | .++..+-..+..++.+..+..+ ++.+++.. ... | .......+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344555555555443 3 2666666677777777776655 77777776 323 4 345566677789999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHH
Q 009663 442 EFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 442 ~~~~~~~~~~~p~~~~~~~~l 462 (529)
.+.++.+++..|++..+....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999886665543
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.50 E-value=0.053 Score=51.04 Aligned_cols=370 Identities=11% Similarity=0.049 Sum_probs=191.4
Q ss_pred cccccccccccHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhc----------
Q 009663 2 VSVTNQLNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDH---------- 71 (529)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~---------- 71 (529)
.|+.+-.++.....+...-.+.+..+++..-+.-.++. .-++.+=+.|+-+|++.+ ++.+-.+.+..
T Consensus 75 dsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~-rL~elEefl~~~N~A~iq~VG 151 (624)
T 3lvg_A 75 DSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN-RLAELEEFINGPNNAHIQQVG 151 (624)
T ss_dssp TSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSC-SSSTTTSTTSCCSSSCTHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhC-cHHHHHHHHcCCCcccHHHHH
Confidence 35556666777777777666777777776666655444 334455568889999988 55443332211
Q ss_pred ------------------CC------------------------CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCC
Q 009663 72 ------------------LT------------------------TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQ 109 (529)
Q Consensus 72 ------------------~~------------------------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~ 109 (529)
+. -.++.+|-.+-.+|... +.+.-|--.=-.++-
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~-~EfrLAqicGLniIv--- 227 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG-KEFRLAQMCGLHIVV--- 227 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHS-CTTTTTTHHHHHHHC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCc-hHHHHHHHhcchhcc---
Confidence 10 02233444444444444 444333222222211
Q ss_pred CCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC----C------
Q 009663 110 PQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD----R------ 179 (529)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~----~------ 179 (529)
.+.-...++..|-..|.+++...+++...... ......++.|.-.|++-. +++..+-++.... |
T Consensus 228 ---hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~--PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 228 ---HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp ---CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC--TTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred ---cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccHHHHHHHH
Confidence 11122344555566666666666666554221 345677888888888775 6666666665543 2
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHhhCC---------------CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc
Q 009663 180 -NVVSWTAMISGYTRVGDIKNAASLFDSMP---------------DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS 243 (529)
Q Consensus 180 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (529)
....|..++-.|.+-.+++.|....-.-. -.+...|..-|..|.+.. +..--+++.-+..
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~p--- 377 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLSP--- 377 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCT---
T ss_pred HHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhccc---
Confidence 34567888888888888887654321100 023334444444443321 1112222222210
Q ss_pred CCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC-----------
Q 009663 244 DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS----------- 312 (529)
Q Consensus 244 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------- 312 (529)
.+.++ .+++.+.+.|++.....++...... -+..+-.++-+.|....+++.-+.-.+.-.
T Consensus 378 -rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~---N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rL 448 (624)
T 3lvg_A 378 -RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRL 448 (624)
T ss_dssp -TCCST-----TTHHHHHTTTCGGGGTGGGTSCCCS---CCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHH
T ss_pred -cCChH-----HHHHHHHhcCCchhhHHHHHHHHHh---hHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHH
Confidence 11111 1122223333333333222222111 123344556677777777766555443322
Q ss_pred -CCChhHHHH-HHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCCh
Q 009663 313 -KKRLTSWNS-MINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI 390 (529)
Q Consensus 313 -~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 390 (529)
+.+..-+.. -...|.++++|++++.+.++ .++ |.-.|.....+|+.+-+.++++-..+. -+.
T Consensus 449 EkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk------Dkl------ykDAietAa~S~~~elaeeLL~yFv~~----g~~ 512 (624)
T 3lvg_A 449 EKHELIEFRRIAAYLFKGNNRWKQSVELCKK------DSL------YKDAMQYASESKDTELAEELLQWFLQE----EKR 512 (624)
T ss_dssp HTCSSHHHHHHHHHHHHTTCHHHHHSSCSST------TCC------TTGGGTTTTTCCCTTHHHHHHHHHHHH----CST
T ss_pred hhCchHHHHHHHHHHHHhcccHHHHHHHHHh------ccc------HHHHHHHHHHcCCHHHHHHHHHHHHHc----Cch
Confidence 223333333 33456667777777665433 223 223445566778888888888887754 245
Q ss_pred hHHHHHHHHHHhcCChHHHHHHH
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVV 413 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~ 413 (529)
..|...+-.|-..=+++-++++-
T Consensus 513 EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 513 ECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp HHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHHHHHHHHHhhccChHHHHHHH
Confidence 56767776776777777777763
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.49 E-value=0.018 Score=50.52 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh-----cCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHH-cCC
Q 009663 370 VEQGRAYFKLMTKTYRIEPQ---IEHYGCLVDLLGR-----AGRFEEALEVVKGM-KIEP--DEVVWGSLLNGCKI-YGR 437 (529)
Q Consensus 370 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~-~g~ 437 (529)
...|...++++. .+.|+ ...|..|...|.+ .|+.++|.+.|++. .+.| +..++......++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 466777777776 44776 5688889989988 49999999999998 6677 37778888888877 499
Q ss_pred HHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 438 TDFAEFAVKKLIEIDPNN-GGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.+++.+.+++++...|.. |. ..+. ..+.-.+|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKLL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHHH----HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhHH----HHHHHHHHHHHHHHhH
Confidence 999999999999987752 33 1222 2334466777766554
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.44 E-value=0.11 Score=40.10 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHhCCCcH------HHHHHHHHHhHHhcCCCCChh-HHHHHHHH------HHhcCChHHHHHHHHhC---
Q 009663 353 DGVTFISLLNACTHGGLV------EQGRAYFKLMTKTYRIEPQIE-HYGCLVDL------LGRAGRFEEALEVVKGM--- 416 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~--- 416 (529)
|..+|-..+....+.|++ ++..++|+++.. .++|+.. .|...+.. +...++.++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555555555555665 566666666554 3344311 11111111 12234555555555554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
...- ..+|......-.+.|+...|.+++.+++.+.|.+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 1111 4445444444555556666666666555555543
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.13 E-value=0.1 Score=39.26 Aligned_cols=82 Identities=10% Similarity=-0.068 Sum_probs=63.6
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCHHHHHH
Q 009663 405 RFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDF---AEFAVKKLIEID-P-NNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 405 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
.+..+.+-|.+. .-.|+..+--.+..++.+..+... ++.+++.+.+.+ | ........|+.++.+.|++++|++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444443 124788888888899998887666 999999998876 5 466788889999999999999999
Q ss_pred HHHHHhhCC
Q 009663 478 VRKMLKDRN 486 (529)
Q Consensus 478 ~~~~~~~~~ 486 (529)
+++.+.+..
T Consensus 96 ~~~~lL~~e 104 (126)
T 1nzn_A 96 YVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999997654
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.18 Score=51.14 Aligned_cols=55 Identities=11% Similarity=-0.104 Sum_probs=51.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
...|...|+++.|+++.++++...|.+-.+|..|+.+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4457789999999999999999999999999999999999999999999999985
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.01 E-value=0.23 Score=39.24 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=24.6
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 455 NGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+..+-..++.+|.+.|++++|+.+++.+..+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 3356677889999999999999998876443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.45 E-value=0.4 Score=37.14 Aligned_cols=96 Identities=10% Similarity=0.160 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHHcCCh------hHHHHHHHHHhhcccCCCCCCH----HHHHHHHHH---HhCCCcHHHHHHHHHHhH
Q 009663 315 RLTSWNSMINSFALHGQS------ENSICVFEEMMRCQDHNIRPDG----VTFISLLNA---CTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 315 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~p~~----~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 381 (529)
|..+|-..+....+.|++ ++..++|++.. ..++|+. ..|..+.-- +...+++++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi----a~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI----EALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH----HHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH----HcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444555555555555555 55555555554 3344432 112222111 112245555555555554
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 382 KTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 382 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
+. +-.- ...|-...+.-.+.|++..|.+++.+.
T Consensus 88 ~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 88 AN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 32 1111 444444444445555555555555544
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.41 E-value=2 Score=32.90 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=49.1
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 387 EPQIEHYGCLVDLLGRAGRFE---EALEVVKGM-KIEP--DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.|+..+--.+..++.+..+.+ +++.+++.. ...| .......+.-++.+.|++++|.++.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 466666666666777766543 566666666 2233 3445556667788888888888888888888887654443
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.26 E-value=0.59 Score=35.37 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=38.2
Q ss_pred CChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 009663 388 PQIEHYGCLVDLLGRAGRF---EEALEVVKGM-KIEP--DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYG 459 (529)
Q Consensus 388 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 459 (529)
|++.+--.+..++.+..+. .+++.++++. ...| ....+..+.-++.+.|++++|.+..+.+++..|+|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 4444444445555555443 3445555544 2223 244455555566666666666666666666666554443
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.01 E-value=9.9 Score=39.64 Aligned_cols=253 Identities=9% Similarity=-0.032 Sum_probs=126.7
Q ss_pred HHHHhcCCHHHHHHHHhhCCC----CCh--hhHHHHHHHHHhCCChhHHHHHHHHhhhccc--CCC--CCCHHHHHHHHH
Q 009663 189 SGYTRVGDIKNAASLFDSMPD----RDV--PAWNSVIAGCTQNGLFSDAISFFRRMGMEVS--DNI--RPNQVTLVCALS 258 (529)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~--~p~~~~~~~ll~ 258 (529)
-+....|+.+++..++..... .+. ..-..+.-+.+..|..+++..++........ .|- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 346677888888888887654 122 2223344455666666677777766553200 000 011111222222
Q ss_pred H--hhccCCchHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHhCCCHHHHHHHHhhcCCC-Chh--HHHHHHHHHHHcCC
Q 009663 259 A--IGHTGMLQLGKVIHGYVYRNGLDLDS--FISNALIDMYGKCGSLKEARRAFDRNSKK-RLT--SWNSMINSFALHGQ 331 (529)
Q Consensus 259 ~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~li~~~~~~~~ 331 (529)
+ +...++ +++...+..+....-. .. ..--+|...+...|+.+....++..+.+. +.. -.-.+.-++...|+
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2 333333 3455555555543211 11 11223344455667777666666543321 222 23333344556788
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHH---HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFI---SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEE 408 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 408 (529)
.+.+..+.+.+.. ...|. .-|. ++.-+|+..|+.....+++..+... ...+......+.-++...|+.+.
T Consensus 540 ~e~~~~li~~L~~----~~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 540 QELADDLITKMLA----SDESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp GGGGHHHHHHHHH----CSCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred hHHHHHHHHHHHh----CCCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 8888888887753 12222 2232 2334567778877777788877642 12233333334444445666666
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHh
Q 009663 409 ALEVVKGM--KIEPDEVVWGSLLNGCKIYGRT-DFAEFAVKKLIE 450 (529)
Q Consensus 409 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 450 (529)
+.++++.+ ...|....-..+.-+....|+. .+++..+..+..
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 67776655 2233333333333344444443 566777777653
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.94 E-value=2.3 Score=32.24 Aligned_cols=148 Identities=11% Similarity=-0.024 Sum_probs=93.1
Q ss_pred hHHHHHHh--CccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC-CChhhHHHHHHHHH
Q 009663 116 IYPHVLKS--CPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD-RNVVSWTAMISGYT 192 (529)
Q Consensus 116 ~~~~l~~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~ 192 (529)
+...++.+ ..-.|..++..++..+..... +..-+|-++--....- +-+-..++++.+-. -|..
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a-~C~y~v~vLd~IGkiFDis---------- 72 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESI-DCRYMFQVLDKIGSYFDLD---------- 72 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHC-CHHHHHHHHHHHGGGSCGG----------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---Cccccceeeeecchhh-chhHHHHHHHHHhhhcCcH----------
Confidence 33444444 344577777777777776643 4455555555555555 56666666665543 2221
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHH
Q 009663 193 RVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVI 272 (529)
Q Consensus 193 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 272 (529)
.+|++......+-.+.. +....+.-+......|+-++-.+++..+.. ..+|++.....+..+|.+.|+..++.++
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~----n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK----NNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC------CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc----cCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 23333333333333322 233445567778888999998888888532 4577888888888899999999999999
Q ss_pred HHHHHHhCCC
Q 009663 273 HGYVYRNGLD 282 (529)
Q Consensus 273 ~~~~~~~~~~ 282 (529)
+.++.+.|++
T Consensus 148 l~~AC~kG~k 157 (172)
T 1wy6_A 148 LIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhhhH
Confidence 9988888863
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.29 E-value=0.5 Score=44.25 Aligned_cols=68 Identities=12% Similarity=0.003 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCccCCc
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD-----RNAYKTPG 492 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 492 (529)
...++.++...|++++++..+..+...+|-+...+..++.++.+.|+..+|++.|+.+.+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344556667778888888888888778887777888888888888888888877777643 36655544
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.80 E-value=15 Score=38.43 Aligned_cols=289 Identities=9% Similarity=-0.047 Sum_probs=149.7
Q ss_pred HHHHHHHHhcCCHHHH-HHHH-hhCC-CCChhhHH-HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHH--HHHHH
Q 009663 185 TAMISGYTRVGDIKNA-ASLF-DSMP-DRDVPAWN-SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTL--VCALS 258 (529)
Q Consensus 185 ~~ll~~~~~~g~~~~A-~~~~-~~~~-~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~--~~ll~ 258 (529)
.++.+++...|--.+. +... +.+. ..+..-+. ..--+....|+.++++.++...... +...+...- ..+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~---~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPG---SRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTT---SCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccc---cCCCcHHHHHHHHHHH
Confidence 4667888877754322 1111 1121 12332333 3334677889999998888876531 112333332 23333
Q ss_pred HhhccCCchHHHHHHHHHHHhCC-------CCCccHHH--HHHHHHHhCCCHHHHHHHHhhcCCCChh-H-HH--HHHHH
Q 009663 259 AIGHTGMLQLGKVIHGYVYRNGL-------DLDSFISN--ALIDMYGKCGSLKEARRAFDRNSKKRLT-S-WN--SMINS 325 (529)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~--~li~~ 325 (529)
+....|..+++..++...+...- .+....-. .|.-+|...++-+-...+..-+...+.. . .. ++...
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli 499 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLC 499 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 45555655678888877665431 01112222 2333334445543333333333333322 1 12 23334
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHH--HHHHHHHHhc
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHY--GCLVDLLGRA 403 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~ 403 (529)
+.-.|+.+....++..+.+ . ..-+..-+..+.-++...|+.+.+..+.+.+... ..|....- ..+.-+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e---~-~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQE---T-QHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHH---C-SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhc---c-CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCC
Confidence 5566777777778777654 2 2112222334444555788888888888888642 12322222 2345567888
Q ss_pred CChHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HhcCC-HHHHHHH
Q 009663 404 GRFEEALEVVKGMKIEPDEVV--WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY--GELGK-WDEVRKV 478 (529)
Q Consensus 404 g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~-~~~a~~~ 478 (529)
|+.....+++..+.-.++..+ ...+.-++...|+.+.+.++++.+.+.. ++.+....+.++ ...|. ..+|+.+
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 898877778888732333333 2233334555677665666665444422 344444333333 33444 3678888
Q ss_pred HHHHhh
Q 009663 479 RKMLKD 484 (529)
Q Consensus 479 ~~~~~~ 484 (529)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 888864
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.51 E-value=1.5 Score=34.65 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCH-------HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDG-------VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ- 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~- 389 (529)
++..-+..+...|.++.|+-+...+..+ .+..|+. .++..+..++...+++..|...|++..+....-+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl--~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTL--SNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--hcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566677777777777777776653 2222331 24455566677777777777777775433222221
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
......+. ....... ......+...-..+..+|.+.|++++|+.+++.+....- ++.+...|++.|
T Consensus 100 ~s~~~~~~----~~ss~p~------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTG----NSASTPQ------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-TPKINMLLANLY 165 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-CHHHHHHHHHHC
T ss_pred CCcccccc----ccCCCcc------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-CHHHHHHHHHHh
Confidence 11111010 0000000 001122334444466777788888888888776544333 556666666554
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.46 E-value=4.7 Score=43.81 Aligned_cols=147 Identities=7% Similarity=0.015 Sum_probs=90.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC---------------
Q 009663 288 SNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP--------------- 352 (529)
Q Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p--------------- 352 (529)
...++..+...+.++-+.++..-... +...--.+..+|...|++++|.++|++.. .|+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa----~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS----LVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC----CSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh----hhhcccchhhhhhccccccc
Confidence 33455566666777766665544433 33333455677778888888888887763 22211
Q ss_pred --------CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-C--hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 009663 353 --------DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-Q--IEHYGCLVDLLGRAGRFEEALEVVKGMK-IEP 420 (529)
Q Consensus 353 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 420 (529)
-..-|..++..+.+.+.++.+.++-..+.+..+-.+ + ...|..+.+.+...|++++|...+-.++ ..-
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 112255666777777888888777776665422111 1 2257778888888888888888876662 122
Q ss_pred CHHHHHHHHHHHHHcCCHH
Q 009663 421 DEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~ 439 (529)
-...+..++..++..|..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 4566667776666655444
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.43 E-value=3.6 Score=38.39 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 396 LVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
++..+...|++++|...+..+ ...| +...|..++.++.+.|+..+|++.|++..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555544444 2222 44455555555555555555555555443
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.04 E-value=3.7 Score=29.06 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=62.8
Q ss_pred CcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009663 25 HINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDM 104 (529)
Q Consensus 25 ~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 104 (529)
.-+++..|-+++...+- ...+.-.=+..+..+| ++++|..+.+....||...|-+|-..-. |-.+++..-+.++
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG-~Yq~Al~l~~~~c~pdlepw~ALce~rl---Gl~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRG-DYASALQQGNKLAYPDLEPWLALCEYRL---GLGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT-CHHHHHHHHTTSCCGGGHHHHHHHHHHH---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch-hHHHHHHhcCCCCCchHHHHHHHHHHhc---ccHHHHHHHHHHH
Confidence 44677889998888765 4444333344556777 9999999999999999999988877655 7777887777788
Q ss_pred HHCCCCCCCcchHH
Q 009663 105 VRRGQPQPNQFIYP 118 (529)
Q Consensus 105 ~~~~~~~~~~~~~~ 118 (529)
...| .|....|.
T Consensus 96 a~sg--~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ--DPRIQTFV 107 (116)
T ss_dssp TTCC--CHHHHHHH
T ss_pred HhCC--CHHHHHHH
Confidence 7776 45444443
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.89 E-value=13 Score=35.22 Aligned_cols=190 Identities=8% Similarity=0.059 Sum_probs=113.4
Q ss_pred CCChhHHHHHHHHhhhcc--cCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH----HhC
Q 009663 225 NGLFSDAISFFRRMGMEV--SDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY----GKC 298 (529)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~--~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 298 (529)
.|+++.|++.+..+.+.. .............++..|...++++...+.+..+.+..-.. ......++..+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 378889998888877531 22344456678888888999999988888777665432221 22223333322 222
Q ss_pred CCHH--HHHHHHhhcCC---CC-------hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC---HHHHHHHHHH
Q 009663 299 GSLK--EARRAFDRNSK---KR-------LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD---GVTFISLLNA 363 (529)
Q Consensus 299 g~~~--~A~~~~~~~~~---~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~---~~~~~~l~~~ 363 (529)
...+ .-..+.+.+.. .- ......|...|...|++.+|..++..+.. ...+..+. ...+...++.
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~-Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV-ETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHCSSSCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHH
Confidence 3222 22333332221 11 11345677888888999999998888764 11222221 1245556777
Q ss_pred HhCCCcHHHHHHHHHHhHHh-cCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 364 CTHGGLVEQGRAYFKLMTKT-YRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
|...+++..|..++.++... ....++ ...+...+..+...+++.+|.+.|.+.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888888888888876431 111222 235566677777888888887776554
No 250
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.64 E-value=3.4 Score=29.19 Aligned_cols=86 Identities=9% Similarity=-0.050 Sum_probs=63.2
Q ss_pred CcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009663 25 HINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDM 104 (529)
Q Consensus 25 ~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 104 (529)
.-+++..|-+++...+- ...+.-.=+..+..+| ++++|..+.+....||...|-+|-..-. |-.+++..-+.++
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG-~Yq~Al~l~~~~c~pdlepw~ALce~rl---Gl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQG-RYQEALAFAHGNPWPALEPWFALCEWHL---GLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT-CHHHHHGGGTTCCCGGGHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch-hHHHHHHhcCCCCCchHHHHHHHHHHhc---ccHHHHHHHHHHH
Confidence 44677889998888765 4444333344556777 9999999999999999999988876644 7788888888788
Q ss_pred HHCCCCCCCcchHH
Q 009663 105 VRRGQPQPNQFIYP 118 (529)
Q Consensus 105 ~~~~~~~~~~~~~~ 118 (529)
...| .|....|.
T Consensus 95 a~sg--~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS--DPALADFA 106 (115)
T ss_dssp HTCS--SHHHHHHH
T ss_pred HhCC--CHHHHHHH
Confidence 8777 55544443
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.28 E-value=2.2 Score=32.31 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 009663 371 EQGRAYFKLMTKTYRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP 420 (529)
Q Consensus 371 ~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 420 (529)
.+++.+++.+.+. + | ....+-.|.-++.+.|++++|.+..+.+ .+.|
T Consensus 60 ~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 60 RLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3455555555433 1 2 1333444444555555555555555554 4444
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.05 E-value=6.4 Score=30.20 Aligned_cols=69 Identities=7% Similarity=-0.051 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 419 EPDEVVWGSLLNGCKIYGRT---DFAEFAVKKLIEIDPN-NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 419 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.|+..+--.+..++.++.+. .+++.+++.+.+..|. .......|+.++.+.|++++|+++.+.+.+...
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 56666666667777776643 4677777777776663 455666677777888888888887777766543
No 253
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=88.42 E-value=9.7 Score=31.52 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=3.4
Q ss_pred HHHHHHhcC
Q 009663 155 LVNSYSRSG 163 (529)
Q Consensus 155 l~~~~~~~g 163 (529)
.+.++.+.|
T Consensus 101 a~~aL~~~~ 109 (211)
T 3ltm_A 101 AAVALGQIG 109 (211)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 333333333
No 254
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.51 E-value=11 Score=30.80 Aligned_cols=49 Identities=14% Similarity=-0.023 Sum_probs=28.6
Q ss_pred CChHHHHHHHHhC---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 404 GRFEEALEVVKGM---KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 404 g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
+...++.++|..| ++.. -...|......+...|++.+|.++|+..++.+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3355666666555 3333 34555566666666677777777777666643
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.09 E-value=6.9 Score=27.84 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVD 398 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (529)
.-+..+-++.+.. ..+.|+.....+.+++|.+.+++..|.++++.++.+.| +...+|..+++
T Consensus 26 ~~e~rrglN~l~~---~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVG---YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTT---SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhc---cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445555666655 77888988999999999999999999999988876533 33456666653
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.97 E-value=7.1 Score=27.78 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 416 MKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 416 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
+.+-|++.+..+.+.+|.+.+++..|+++++-++..-.+...+|-.+
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 35678888888888888888888888888888776443334445443
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.79 E-value=4.2 Score=41.39 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=41.4
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009663 156 VNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRVGDIKNAASLFDSMP 208 (529)
Q Consensus 156 ~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 208 (529)
...+...| +++.|+++-++... | +-.+|..|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566677 88888888888765 5 45688888888888888888888888876
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.17 E-value=22 Score=31.62 Aligned_cols=168 Identities=7% Similarity=0.029 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHH----HHHhhhcccCCCCCCHHHHHHHHHH
Q 009663 184 WTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISF----FRRMGMEVSDNIRPNQVTLVCALSA 259 (529)
Q Consensus 184 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~p~~~~~~~ll~~ 259 (529)
|.++..-|.+.+++++|++++.. -...+.+.|++..|-++ .+-..+. +++++......++..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~---~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLA---EVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHH
Confidence 34455566666777777666432 12334455665554443 3333333 667777777666666
Q ss_pred hhccCCch-HHHHHHHHHH----HhC--CCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---
Q 009663 260 IGHTGMLQ-LGKVIHGYVY----RNG--LDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALH--- 329 (529)
Q Consensus 260 ~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--- 329 (529)
+.....-+ .-..+++.++ +.| ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 54432111 2233344443 222 2236677888999999999999999887532222344444444333322
Q ss_pred CChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHh
Q 009663 330 GQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 383 (529)
|...++-- ..-..++ .|...|+...|..+++...+.
T Consensus 182 ~~~~e~dl-----------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 182 IEDSTVAE-----------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCHHHHHH-----------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchHHH-----------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 32222211 1112222 244468899998888877644
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.01 E-value=12 Score=40.78 Aligned_cols=165 Identities=10% Similarity=0.021 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC
Q 009663 185 TAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG 264 (529)
Q Consensus 185 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~ 264 (529)
..++..+.+.+..+.+.++..-... ++..--.+..+|...|++++|.+.|++... ++..+.... .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~----~~~~~~~l~----------~ 880 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL----VLYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC----SCTTCCCSC----------S
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh----hhcccchhh----------h
Confidence 3456667777888888777666654 444445667889999999999999987642 222111000 0
Q ss_pred CchHHHHHHHHHHHhCC--CCCccHHHHHHHHHHhCCCHHHHHHHHhh----cCCCCh----hHHHHHHHHHHHcCChhH
Q 009663 265 MLQLGKVIHGYVYRNGL--DLDSFISNALIDMYGKCGSLKEARRAFDR----NSKKRL----TSWNSMINSFALHGQSEN 334 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~~~~~~ 334 (529)
... -+..+..... ..-..-|..++..+.+.|.++.+.++-.. ....+. ..|..+..++...|++++
T Consensus 881 ~~~----~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLR----EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHH----HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhc----ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 000 0011111111 11122455666666677766666555432 222221 157777788888888888
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 335 SICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 335 a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
|...+-.+.. ... -...+..|+..+|..|..+.-
T Consensus 957 Ay~aL~~~pd---~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 957 AHVALMVLST---TPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp GGHHHHHHHH---SSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHhCCC---HHH--HHHHHHHHHHHHHhCCChhhh
Confidence 8888777654 333 234566666665555544433
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.46 E-value=2.9 Score=36.09 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=36.9
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 399 LLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
...+.|++++|++.+..- +-.| |...=..++..++-.|+++.|.+-++-..+++|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 445667777777666554 3344 5555556667777777777777777777777774
No 261
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=83.14 E-value=18 Score=29.60 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 009663 187 MISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNG 226 (529)
Q Consensus 187 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 226 (529)
.+.++.+.|+.+....+.+.+.+++...-...+.++.+.+
T Consensus 65 a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 65 AADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3333333333333333333333334333333333333333
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.71 E-value=30 Score=32.03 Aligned_cols=297 Identities=10% Similarity=0.062 Sum_probs=137.9
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhc-CCHHHHHHHHhhCCC---CChhhH--
Q 009663 150 VVETALVNSYSRSGNDIGIARKLFDEMSD--------RNVVSWTAMISGYTRV-GDIKNAASLFDSMPD---RDVPAW-- 215 (529)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~---~~~~~~-- 215 (529)
.....|...|.+.| +.++..+++..... ........++..+... +..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEG-KAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHT-CHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888 88888888877764 1233455566655543 222333333332221 111222
Q ss_pred --H--HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCH---HHHHHHHHHhhccCCchHHHHHHHHHHHh--CCCCCcc
Q 009663 216 --N--SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ---VTLVCALSAIGHTGMLQLGKVIHGYVYRN--GLDLDSF 286 (529)
Q Consensus 216 --~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 286 (529)
- .++..|...|++.+|.+++.++.+.... ..... ..+..-+..+...+++..+...+...... .+.+++.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 1 3566677777777777777777654221 11111 12223333445555555555555544322 1111221
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHH-HcCChhHHHHHHHHHhhcccCCCCC---CHHHHHHHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFA-LHGQSENSICVFEEMMRCQDHNIRP---DGVTFISLLN 362 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~~p---~~~~~~~l~~ 362 (529)
+... +. ..-...+. ..+++..|...|-+..+....-..| +...|..+..
T Consensus 178 i~a~-i~--------------------------~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a 230 (394)
T 3txn_A 178 VQGA-LD--------------------------LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK 230 (394)
T ss_dssp HHHH-HH--------------------------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHH-HH--------------------------HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 1111 11 11112223 3455555555444432100011111 1123333332
Q ss_pred HHhCCCcHHHHHHHH-HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHH
Q 009663 363 ACTHGGLVEQGRAYF-KLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 439 (529)
.. .....+ ...++ ......+ ..|....+..++.+| ..+++.+...+++.. .+..|......+-..+.+
T Consensus 231 Ll-~~~r~e-l~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~----- 301 (394)
T 3txn_A 231 IM-LGQSDD-VNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT----- 301 (394)
T ss_dssp HH-TTCGGG-HHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----
T ss_pred HH-cCCHHH-HHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----
Confidence 22 222212 11222 1211121 245555566666654 567888777887776 244455432111111000
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 440 FAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 440 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
--...+.++ ..|-.......++..+.- ..+++...+-+|+..|.-
T Consensus 302 Ir~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 302 MLEQNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 001111111 457677777777766543 688999999999988763
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.81 E-value=24 Score=30.48 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=26.9
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
.+.|+.+++++....-.+ .-+-|...-..++..+|-.|+++.|.+-++...
T Consensus 8 l~~g~L~~al~~~~~~VR----~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK----ASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH----TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445555555555554442 222344444455555566666666666655554
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.79 E-value=21 Score=29.45 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCC
Q 009663 148 YPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGD 196 (529)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 196 (529)
+...-...+..+.+.| +.+....+.+.+.+++...-...+.++.+.++
T Consensus 32 ~~~vR~~A~~~L~~~~-~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIG-DERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 4444444444444444 43333333333333444333333444444443
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.91 E-value=11 Score=28.46 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 009663 333 ENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVD 398 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (529)
-+..+-++.+.. ..+.|+.......+++|.+.+++..|.++|+-++.+. .+...+|..+++
T Consensus 70 wElrrglN~l~~---~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVG---YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTT---SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhc---cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 344555555554 7788999999999999999999999999999987653 344556766654
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.47 E-value=23 Score=27.52 Aligned_cols=47 Identities=15% Similarity=0.009 Sum_probs=24.8
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 441 AEFAVKKLIE--IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 441 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+.++|..+.. ++-..+..|...+..+...|++++|.++++.=++++-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4555555544 3333445555555555555666666665555555443
No 267
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=76.98 E-value=28 Score=28.27 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=46.9
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC
Q 009663 170 RKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN 249 (529)
Q Consensus 170 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~ 249 (529)
..+++.+..+|...-...+..+.+.++.+....+.+.+..++...-...+.++...|..+.. ..+..+. -.++
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l------~d~~ 89 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV-EPLIKAL------KDED 89 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHT------TCSS
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH-HHHHHHH------cCCC
Confidence 34444444555555555556666666555455555556566665555555666666654333 3333332 1345
Q ss_pred HHHHHHHHHHhhccCCc
Q 009663 250 QVTLVCALSAIGHTGML 266 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~ 266 (529)
...-...+.++...++.
T Consensus 90 ~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDE 106 (201)
T ss_dssp HHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHhCcH
Confidence 55555555555555543
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.25 E-value=52 Score=30.46 Aligned_cols=157 Identities=11% Similarity=-0.028 Sum_probs=90.7
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcC----CCCh-----hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHH-
Q 009663 290 ALIDMYGKCGSLKEARRAFDRNS----KKRL-----TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFIS- 359 (529)
Q Consensus 290 ~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~- 359 (529)
.++..|...|++.+|.+++.++. ..|. ..+-.-+..|...++..++...+......... +.|+...-..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-i~~~p~i~a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-IYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-CCCCHHHHHHH
Confidence 57889999999999988876553 2221 25666678889999999999999887653222 2233322211
Q ss_pred ---HHHHHh-CCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHH-hC--C-CCCCHHHHH
Q 009663 360 ---LLNACT-HGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVK-GM--K-IEPDEVVWG 426 (529)
Q Consensus 360 ---l~~~~~-~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~-~~--~-~~p~~~~~~ 426 (529)
-...+. ..+++..|...|-+..+.+.-..+ ...|..|.... .++..+...++. .. . ..|+...+.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHH
Confidence 122345 789999998888777654321111 12333332222 233333322221 10 1 245555556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.++.+ ...+++.+...+++....
T Consensus 261 ~L~~a-~~~~dl~~f~~iL~~~~~ 283 (394)
T 3txn_A 261 SVAEA-SHKRSLADFQAALKEYKK 283 (394)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHSTT
T ss_pred HHHHH-HHhCCHHHHHHHHHHHHH
Confidence 66665 456788777777666543
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.16 E-value=18 Score=34.11 Aligned_cols=59 Identities=12% Similarity=-0.019 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
...+...+.+.|+++.|.+.+.++... ...+ -...+..+++.+...+++..+...++++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444444555555555555554432 1111 1334444445555555555554444443
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.33 E-value=32 Score=27.15 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 422 EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 422 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
...|......+-..|++.+|.++|+..++.+
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4455555555666666666666666666643
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.72 E-value=54 Score=29.48 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHH----HHHhhcccCCCCCCHHHHHHHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVF----EEMMRCQDHNIRPDGVTFISLLN 362 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~~~p~~~~~~~l~~ 362 (529)
+|.++..=|.+.+++++|++++.. -...+.+.|+...|-++- +...+ .++++|......++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~---~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQ---AGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH---HTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH---cCCCCCHHHHHHHHH
Confidence 345566667888889888887643 123344555555444433 33333 667777777767766
Q ss_pred HHhCCCcHH-HHHHHHHHhHH---hcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 009663 363 ACTHGGLVE-QGRAYFKLMTK---TYRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYG 436 (529)
Q Consensus 363 ~~~~~~~~~-~a~~~~~~~~~---~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 436 (529)
.+.....-+ .-..+.+++.+ +.|-.| ++.....+...|.+.+++.+|..-|= .+..+.+..+..++.-+...+
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhc
Confidence 665543211 11222222221 113223 67788889999999999999998883 353445567766665554444
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
...++--+ ....+--|.-.|+...|..+++...+
T Consensus 182 ~~~e~dlf--------------iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ESHTAPLY--------------CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CGGGHHHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccHHHH--------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 32222111 11222345677888888887766654
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.24 E-value=23 Score=25.09 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=26.0
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 190 GYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
.+...|++++|..+.+...-||...|..|.. .+.|-.+++...+.++.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 3455566666666666655556555544432 34455555555554543
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.02 E-value=42 Score=27.51 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchh
Q 009663 79 LYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPV 150 (529)
Q Consensus 79 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 150 (529)
.|-..+..+ .. ++...+.++|..|...|+..--+..|......+...|++++|.++|+.-++.+-.|-..
T Consensus 82 lWl~Ya~~~-~~-~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 82 IWIWYINLF-LS-NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp HHHHHHHHH-ST-TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHhh-cc-cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 444455544 13 55789999999999988756677788888888999999999999999999988777654
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.75 E-value=44 Score=31.44 Aligned_cols=98 Identities=8% Similarity=-0.016 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHH--H
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKK------RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTF--I 358 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~--~ 358 (529)
+...+...|.+.|++++|.+.|.++... -+..+-..+..+...+++..+...+.++......+..|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677889999999999999999876532 2347778888888899999999999888764334444433321 1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhc
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTY 384 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 384 (529)
.-...+...+++..|...|-+....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 22223456788888888887776553
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.57 E-value=34 Score=25.90 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 413 VKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 413 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
+-.+.+-|++.+..+.+.+|.+.+++..|+++++-++..-.+...+|-.+
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 33446789999999999999999999999999998887543344555544
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.41 E-value=89 Score=29.52 Aligned_cols=143 Identities=8% Similarity=0.090 Sum_probs=74.9
Q ss_pred CCHHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHH----hh
Q 009663 195 GDIKNAASLFDSMPD-----R----DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSA----IG 261 (529)
Q Consensus 195 g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~----~~ 261 (529)
|+++.|++.+-.+.+ . .......++..|...|+++...+.+..+... .|..+.. ...++.. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk--r~qlk~a--i~~~V~~~~~~l~ 105 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK--HGQLKLS--IQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT--TTTSHHH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--hhhhHHH--HHHHHHHHHHHHh
Confidence 566777666544321 1 2334666777777778887777777666532 1222222 2223222 22
Q ss_pred ccCCchHHHHHHHHHHHh--CCC-----C---CccHHHHHHHHHHhCCCHHHHHHHHhhcCC----C-C----hhHHHHH
Q 009663 262 HTGMLQLGKVIHGYVYRN--GLD-----L---DSFISNALIDMYGKCGSLKEARRAFDRNSK----K-R----LTSWNSM 322 (529)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~--~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~l 322 (529)
.....+.-.. ...... .+. . .......|...|...|++.+|.+++..+.. . + +..+..-
T Consensus 106 ~~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 106 SSKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred cCCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2222221111 111111 010 1 112234567777777888888777776542 1 1 1256666
Q ss_pred HHHHHHcCChhHHHHHHHHHh
Q 009663 323 INSFALHGQSENSICVFEEMM 343 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~ 343 (529)
+..|...+++.+|..++.++.
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 677777788888887777764
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.90 E-value=38 Score=24.02 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 009663 266 LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRC 345 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 345 (529)
.++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||+..|-++.. .+.|-.+++...+.++..
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~- 96 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG- 96 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh-
Confidence 4555555555555443 22222223445677888888888888888888888777654 466777777777766653
Q ss_pred ccCCCCCCHHHHH
Q 009663 346 QDHNIRPDGVTFI 358 (529)
Q Consensus 346 ~~~~~~p~~~~~~ 358 (529)
.-.|....|.
T Consensus 97 ---sg~p~~q~Fa 106 (115)
T 2uwj_G 97 ---SSDPALADFA 106 (115)
T ss_dssp ---CSSHHHHHHH
T ss_pred ---CCCHHHHHHH
Confidence 2344444443
No 278
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.43 E-value=1.5e+02 Score=29.59 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=14.0
Q ss_pred HhcCCHHHHHHHHHHH
Q 009663 467 GELGKWDEVRKVRKML 482 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~ 482 (529)
.+.|+|++|++.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 7889999999888775
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=58.26 E-value=1.5e+02 Score=29.42 Aligned_cols=369 Identities=9% Similarity=-0.039 Sum_probs=188.2
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCC
Q 009663 30 KQLQSFLTTLGQSQ-TNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRG 108 (529)
Q Consensus 30 ~~i~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~ 108 (529)
.+|..-+.+.+-.| ....-+.-+..+++.+ ++......+.. ++.+...--....+.... |+..+|......+-..|
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~-~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~-G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARRE-DWRGLLAFSPE-KPGTTEAQCNYYYAKWNT-GQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT-CHHHHHHHCCS-CCSSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCC-CHHHHHHhccC-CCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHhCC
Confidence 35555454443222 2344455566666666 77777776655 333333333344455555 77666777666666655
Q ss_pred CCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHH
Q 009663 109 QPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMI 188 (529)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll 188 (529)
. ..+..... +|....+.|.-.....+. =+......| +...|..+...+..........++
T Consensus 133 ~--~~p~~c~~----------------l~~~~~~~g~lt~~~~~~-R~~~al~~~-~~~~a~~l~~~l~~~~~~~a~~~~ 192 (618)
T 1qsa_A 133 K--SQPNACDK----------------LFSVWRASGKQDPLAYLE-RIRLAMKAG-NTGLVTVLAGQMPADYQTIASAII 192 (618)
T ss_dssp S--CCCTHHHH----------------HHHHHHHTTCSCHHHHHH-HHHHHHHTT-CHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred C--CCcHHHHH----------------HHHHHHHCCCCCHHHHHH-HHHHHHHCC-CHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 23333333 344444433222222222 234455566 777777777766322222223333
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHH--HHHHHHHHhhcc
Q 009663 189 SGYTRVGDIKNAASLFDSMPDRDVP---AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQV--TLVCALSAIGHT 263 (529)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~--~~~~ll~~~~~~ 263 (529)
..+.+-. .+....... .++.. .+..-+.-+.+ .+.+.|...+...... ....+... ....+...+...
T Consensus 193 al~~~p~---~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ia~~~~~~ 265 (618)
T 1qsa_A 193 SLANNPN---TVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQA--QQLNEDQIQELRDIVAWRLMGN 265 (618)
T ss_dssp HHHHCGG---GHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHTSCST
T ss_pred HHHhChH---hHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhc--cCCCHHHHHHHHHHHHHHHHHc
Confidence 3333222 223333332 22221 12222333333 3789999999887643 12322222 122233334445
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHH
Q 009663 264 GMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL---TSWNSMINSFALHGQSENSICVFE 340 (529)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~ 340 (529)
+...++...+....... .+.....-.+....+.|+++.|...|+.|..... ...-=+..++...|+.++|..+|+
T Consensus 266 ~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~ 343 (618)
T 1qsa_A 266 DVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH 343 (618)
T ss_dssp TCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 53556666666654433 3333344455555678999999999999976432 223334567788899999999999
Q ss_pred HHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hh-----HHHHHHHHHHhcCChHHHHHHHH
Q 009663 341 EMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IE-----HYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 341 ~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
.+.. +. +|..++.+ .+.|..-.. ... ...+. .. .-..-+..+...|....|...+.
T Consensus 344 ~~a~-------~~--~fYg~lAa-~~Lg~~~~~-----~~~---~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~ 405 (618)
T 1qsa_A 344 QLMQ-------QR--GFYPMVAA-QRIGEEYEL-----KID---KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWA 405 (618)
T ss_dssp HHHT-------SC--SHHHHHHH-HHTTCCCCC-----CCC---CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhc-------CC--ChHHHHHH-HHcCCCCCC-----CCC---CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHH
Confidence 9853 21 33333322 122211000 000 00110 00 11223455778899999988877
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 415 GMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 415 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
...-..+......+.......|.++.++....+.
T Consensus 406 ~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 406 NLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 7621344444445555566778888877666544
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.26 E-value=31 Score=28.76 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=30.7
Q ss_pred CChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 404 GRFEEALEVVKGMKIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 404 g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
.+..+....+..-++.. -...|......+...|++.+|.++|+..++.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34443333333334443 45666677777777888888888888887754
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.92 E-value=67 Score=24.94 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhH
Q 009663 94 ASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVV 151 (529)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 151 (529)
...+.++|..|...|+-.--+..|......+...|++++|.++++.-++.+-.|-...
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 3458899999999887566677788888888899999999999999988887775543
No 282
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=54.67 E-value=1e+02 Score=26.45 Aligned_cols=180 Identities=11% Similarity=0.043 Sum_probs=74.5
Q ss_pred CchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCCh----HHHHHHHHHHHHCCCCCCCcchHH
Q 009663 43 QTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHA----SSAFSLYRDMVRRGQPQPNQFIYP 118 (529)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~ 118 (529)
+++.+-...+..+.+.+ ..+....+.+.+..++...-...+.++... +.. ...+.++..+... .++...-.
T Consensus 35 ~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l-~~~~~~~~~l~~~L~~~~~~---d~~~~vr~ 109 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRG-GQDAVRLAIEFCSDKNYIRRDIGAFILGQI-KICKKCEDNVFNILNNMALN---DKSACVRA 109 (280)
T ss_dssp SSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCSSHHHHHHHHHHHHHS-CCCTTTHHHHHHHHHHHHHH---CSCHHHHH
T ss_pred CCHHHHHHHHHHHHccC-CchHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccccccchHHHHHHHHHHhc---CCCHHHHH
Confidence 45555555556666655 444444444444455554444445555544 322 2222333321111 33444444
Q ss_pred HHHHhCccCCC--chHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC-
Q 009663 119 HVLKSCPDVLE--SRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVG- 195 (529)
Q Consensus 119 ~l~~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g- 195 (529)
..+.++...+. ......+...+...--.++..+-...+.++...| +.+....+.+.+.+++...-...+.++.+.+
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~-~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 188 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN-DKATIPLLINLLKDPNGDVRNWAAFAININKY 188 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc
Confidence 44444443331 1111122222222212345555555555666655 4332333333333455444444444444433
Q ss_pred -CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 009663 196 -DIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLF 228 (529)
Q Consensus 196 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (529)
..+-...+...+.+++..+-...+.++.+.|+.
T Consensus 189 ~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 189 DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCH
Confidence 222222333334444554444445555555543
No 283
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.45 E-value=89 Score=27.72 Aligned_cols=67 Identities=9% Similarity=0.149 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCc--HHHHHHHHHHhHHhcCCCCC
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGL--VEQGRAYFKLMTKTYRIEPQ 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~p~ 389 (529)
....++.-|...|+.++|.+.++++.. .... .......+..++-+.++ .+....++..+.+. |+-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~---p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~ 236 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEV---PHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITV 236 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC---GGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCC---Ccch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCH
Confidence 456678888888999999999988842 1111 12344455555555432 45566777777655 44443
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=54.40 E-value=80 Score=25.08 Aligned_cols=76 Identities=14% Similarity=0.033 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCC--------------CchhHHHHHH
Q 009663 403 AGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE----IDPN--------------NGGYGIMLAN 464 (529)
Q Consensus 403 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~--------------~~~~~~~l~~ 464 (529)
.|.+..++-++.... ...+..--.-++.+.+++..|+..++.+++ .+|+ ...++..++.
T Consensus 46 ngEY~R~Lf~L~~lN---T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 46 NGEYTRALFHLHKLN---TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp TTCHHHHHHHHHTCC---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred cchHhHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHH
Q 009663 465 IYGELGKWDEVRKVRKM 481 (529)
Q Consensus 465 ~~~~~g~~~~a~~~~~~ 481 (529)
.+...|..+||++.+..
T Consensus 123 lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhh
No 285
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.07 E-value=1.1e+02 Score=32.41 Aligned_cols=85 Identities=6% Similarity=-0.229 Sum_probs=46.6
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC----------------
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPD---------------- 421 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~---------------- 421 (529)
++..|...|.++-+.++..- ++.++..--.+..+|...|++++|.+.|+++ ++..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 44555556666655443221 1223333234667777888888888888877 32111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 422 -------EVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 422 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
..-|..++..+-+.+.++.++++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11344555555566666666666666665
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.93 E-value=96 Score=25.87 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchh
Q 009663 94 ASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPV 150 (529)
Q Consensus 94 ~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 150 (529)
.+.+.++|..|...|+..--+..|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 357788999999998756667778888888889999999999999999888777544
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.20 E-value=1.1e+02 Score=26.13 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=24.6
Q ss_pred cCCchHHHHHHHHHHHhCCCCCccH--HHHHHHHHHhCCCHHHHHHHHh
Q 009663 263 TGMLQLGKVIHGYVYRNGLDLDSFI--SNALIDMYGKCGSLKEARRAFD 309 (529)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 309 (529)
.++......+.+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3444444555666666665544321 1123444556677776666665
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.35 E-value=84 Score=24.75 Aligned_cols=58 Identities=9% Similarity=0.094 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHH
Q 009663 95 SSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVE 152 (529)
Q Consensus 95 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 152 (529)
+.+.++|..|...|+..--+..|......+-..|++.+|.++|..-++.+..|-...-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQ 134 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 3477899999999886666777888888888999999999999999998888775443
No 289
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=50.72 E-value=1.4e+02 Score=26.81 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHH----HHhhhcccCCCCCCHHHHHHHHHH
Q 009663 184 WTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFF----RRMGMEVSDNIRPNQVTLVCALSA 259 (529)
Q Consensus 184 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~~p~~~~~~~ll~~ 259 (529)
|.++..-|.+.+++++|++++.. -...+.+.|+...|.++- +-..+. ++++|......++..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~---~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQA---GQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHH
Confidence 34455556677777777766532 123344555555444332 333333 667777766666666
Q ss_pred hhccCCch-HHHHHHHHHH----HhC--CCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh
Q 009663 260 IGHTGMLQ-LGKVIHGYVY----RNG--LDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQS 332 (529)
Q Consensus 260 ~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 332 (529)
+.....-+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|+..|---..+....+..++.-+...+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 65444321 1223333333 223 3346677888899999999999999888422222224454444333332221
Q ss_pred hHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 333 ENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
.++ +.+.-..++ -|...++...|..+++...+
T Consensus 184 ~e~-----------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTA-----------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGH-----------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ccH-----------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 111 112222233 34446788888887766554
No 290
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=48.71 E-value=97 Score=25.18 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=35.4
Q ss_pred hHHHHHHHHhCCCCCCH--HHH-----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 009663 406 FEEALEVVKGMKIEPDE--VVW-----GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEV 475 (529)
Q Consensus 406 ~~~A~~~~~~~~~~p~~--~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 475 (529)
++.|+.+|+.++..-+. ... ...+..|.+.|.+++|.+++++....++.+...-..|...-.+..-+...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~ 170 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSF 170 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHH
Confidence 45667777766322221 111 12234577888888888888887766655555555554444444333333
No 291
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=47.52 E-value=1.3e+02 Score=25.69 Aligned_cols=10 Identities=0% Similarity=-0.077 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q 009663 441 AEFAVKKLIE 450 (529)
Q Consensus 441 A~~~~~~~~~ 450 (529)
+...+.++..
T Consensus 253 ~~~~L~~~l~ 262 (280)
T 1oyz_A 253 LLPVLDTMLY 262 (280)
T ss_dssp GHHHHHHHHT
T ss_pred hhHHHHHHHh
Confidence 4444444443
No 292
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=47.05 E-value=1.5e+02 Score=26.24 Aligned_cols=170 Identities=11% Similarity=0.016 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHH----HHHHhhcccCCCCCCHHHHHHHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICV----FEEMMRCQDHNIRPDGVTFISLLN 362 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~p~~~~~~~l~~ 362 (529)
.|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ .+...+ .+.+++......++.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~---~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDL---AEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH---cCCCCCHHHHHHHHH
Confidence 455566667788888888887643 22344556666555554 333333 677778777777776
Q ss_pred HHhCCCcHH-HHHHHHHHhHH---hcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-
Q 009663 363 ACTHGGLVE-QGRAYFKLMTK---TYRI--EPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIY- 435 (529)
Q Consensus 363 ~~~~~~~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~- 435 (529)
.+......+ .-.++++++.+ +.|- .-++.....+...|.+.|++.+|..-|- .+..-|...+..++.-+...
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhc
Confidence 665422111 11222333221 1122 2367788888899999999999888775 33122455555555554444
Q ss_pred --CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 436 --GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 436 --g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
|...++--++-++ +--|.-.|+...|..+++...++
T Consensus 180 ~~~~~~e~dlf~~Ra--------------VL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 180 DDIEDSTVAEFFSRL--------------VFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp TCCCHHHHHHHHHHH--------------HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH--------------HHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444432222221 12355678888888888776533
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.14 E-value=2.5e+02 Score=29.73 Aligned_cols=129 Identities=10% Similarity=-0.009 Sum_probs=70.2
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCc
Q 009663 290 ALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGL 369 (529)
Q Consensus 290 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~ 369 (529)
.++..+...|.++-|.++..-... +...--.+..+|...|++++|..+|+++. .|+..+..... .
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA----~gl~~~~~~~~----------~ 879 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS----LVLYSHTSQFA----------V 879 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC----CTTCSSCCSCG----------G
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh----hhcccCccccc----------c
Confidence 366667778888887776655554 44433456788888999999999998874 44432211100 0
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCC-C----HHHHHHHHHHHHHcC
Q 009663 370 VEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEP-D----EVVWGSLLNGCKIYG 436 (529)
Q Consensus 370 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p-~----~~~~~~l~~~~~~~g 436 (529)
.+....++.... .-.....-|..++..+.+.+-++-+.++-+.. -..+ | ...|..+..+.+..|
T Consensus 880 ~~~~~~ll~~~e---~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKYH---HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHTT---TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCccc---ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011111111111 00112336677777777777777777666544 1112 2 235666666655443
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.08 E-value=91 Score=23.32 Aligned_cols=62 Identities=10% Similarity=0.222 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCC--hhHHHHHHHHHhhcccCCCCC
Q 009663 288 SNALIDMYGKCGSLKEARRAFDRNSKKRLT---SWNSMINSFALHGQ--SENSICVFEEMMRCQDHNIRP 352 (529)
Q Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~p 352 (529)
...++.-|...|+.++|...++++..|... ....+..++-+.++ .+.+..++..+.. .|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~---~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK---SSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH---TTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH---CCCcC
Confidence 345777788888888888888888765322 34444444444432 3455666666655 55444
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.56 E-value=66 Score=30.93 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCCh--hHH-HHHHHHHHhcCChHHHHHHHHhC
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI--EHY-GCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
..++.+++.|...+.+++|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 345566666666666666666666553000000111 111 22334455566666666665554
No 296
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.54 E-value=93 Score=26.51 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=7.4
Q ss_pred HHhCCCHHHHHHHHhh
Q 009663 295 YGKCGSLKEARRAFDR 310 (529)
Q Consensus 295 ~~~~g~~~~A~~~~~~ 310 (529)
.+..|+.+-+..+++.
T Consensus 112 A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 112 AAVYGKVKALKFLYKR 127 (285)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555544444443
No 297
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=44.20 E-value=24 Score=22.24 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCC
Q 009663 443 FAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTP 491 (529)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 491 (529)
+.++.+.++.|+ ......-...-...|+.+.|+..+-.|...+..|+.
T Consensus 11 e~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 344445556673 222222222224557888888888888777666543
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=42.92 E-value=1.8e+02 Score=25.86 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=40.2
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 417 KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 417 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
++.|. ..++..-+....+.+++..|..+.+++++++|.. . ..++|.+++....+.
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~-~-------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG-P-------------RAEQARKIKNKADSM 256 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-H-------------HHHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH-H-------------HHHHHHHHHHHHhcC
Confidence 56664 3456667777899999999999999999999842 1 345577777666544
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.72 E-value=74 Score=23.82 Aligned_cols=67 Identities=9% Similarity=0.141 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC--cHHHHHHHHHHhHHhcCCCCC
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG--LVEQGRAYFKLMTKTYRIEPQ 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~ 389 (529)
....++.-|...|+.++|.+.++++.. ... -.......+..++-+.+ ..+.+..++..+.+. |+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~---p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~-~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV---PHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC---GGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC---Ccc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcCH
Confidence 345678889999999999999999842 111 12344455566666653 245677777777655 44443
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.37 E-value=89 Score=27.10 Aligned_cols=20 Identities=5% Similarity=0.026 Sum_probs=10.9
Q ss_pred HHHHhhcCCChhHHHHHhhcC
Q 009663 52 VRFCTLKLSNLTYARFIFDHL 72 (529)
Q Consensus 52 l~~~~~~~~~~~~A~~~~~~~ 72 (529)
+...+..| +.+.+..+++.-
T Consensus 35 L~~A~~~g-~~~~v~~Ll~~g 54 (285)
T 3kea_A 35 SYYAIADN-NVRLVCTLLNAG 54 (285)
T ss_dssp HHHHHHTT-CHHHHHHHHHTT
T ss_pred HHHHHHcC-CHHHHHHHHhCC
Confidence 33444455 666666666553
No 301
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=41.94 E-value=1e+02 Score=29.63 Aligned_cols=54 Identities=17% Similarity=-0.023 Sum_probs=34.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
++...-...++.|...|.++..+.|++...++.|+......|+.-+|.-.|-+-
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 333333445667777777777777777777777777776666666665554433
No 302
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.60 E-value=64 Score=30.14 Aligned_cols=354 Identities=14% Similarity=0.166 Sum_probs=161.7
Q ss_pred hcCCCChHHHHHHHHHHHHCCCCCCCcch--HHHHHHhCccCCCchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcC
Q 009663 88 ASQPAHASSAFSLYRDMVRRGQPQPNQFI--YPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPV--VETALVNSYSRSG 163 (529)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g 163 (529)
+.. |+.+- ++.+.+.|. .++... ....+...+..|+.+ +.+.+++.|..++.. ...+.+...+..|
T Consensus 22 a~~-g~~~~----v~~Ll~~g~-~~~~~~~~~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 22 SFM-GHLPI----VKNLLQRGA-SPNVSNVKVETPLHMAARAGHTE----VAKYLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHH-TCHHH----HHHHHHTTC-CSCCSSSCCCCHHHHHHHHTCHH----HHHHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHC-CCHHH----HHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 344 67654 444455565 554321 122333444556654 444445566544321 1223445556778
Q ss_pred CCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHH
Q 009663 164 NDIGIARKLFDEMSDRNV---VSWTAMISGYTRVGDIKNAASLFDSMPDR---DVPAWNSVIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 164 ~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 237 (529)
+.+-+.-+++.-..++. .-+ +.+...++.|+.+-...+++.-... +...++ .+...+..|+.+-+..+++.
T Consensus 92 -~~~~v~~Ll~~ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 92 -HTNMVKLLLENNANPNLATTAGH-TPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp -CHHHHHHHHHHTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHHHT
T ss_pred -CHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHHHHHHHhC
Confidence 78877777776544322 222 2344456778888888888764432 222222 33444567776655444432
Q ss_pred hhhcccCCCCCCHH---HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHH--HHHHHHHHhCCCHHHHHHHHhhcC
Q 009663 238 MGMEVSDNIRPNQV---TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFIS--NALIDMYGKCGSLKEARRAFDRNS 312 (529)
Q Consensus 238 m~~~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 312 (529)
+..++.. ..+ .+...+..|+.+ +++.+.+.|..++.... ...+...+..|+.+-+..+++.-.
T Consensus 169 -------g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 236 (437)
T 1n11_A 169 -------DAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236 (437)
T ss_dssp -------TCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred -------CCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3333211 111 222334455544 34444555554443211 123445567788888877776533
Q ss_pred CC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC---HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCC
Q 009663 313 KK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD---GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRI 386 (529)
Q Consensus 313 ~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 386 (529)
.. +....+.+ ...+..|..+-+.-+++ .+..++ ....+.+.. .+..|..+-+..+++. |.
T Consensus 237 ~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~-------~~~~~~~~~~~g~t~L~~-A~~~~~~~~~~~Ll~~-----g~ 302 (437)
T 1n11_A 237 SANAESVQGVTPL-HLAAQEGHAEMVALLLS-------KQANGNLGNKSGLTPLHL-VAQEGHVPVADVLIKH-----GV 302 (437)
T ss_dssp CTTCCCTTCCCHH-HHHHHTTCHHHHHHHHT-------TTCCTTCCCTTCCCHHHH-HHHHTCHHHHHHHHHH-----TC
T ss_pred CCCCCCCCCCCHH-HHHHHCCCHHHHHHHHh-------cCCCCCCCCCCCCCHHHH-HHHcCCHHHHHHHHhC-----Cc
Confidence 22 22222222 23345566554443332 333332 112222332 3344665544444432 43
Q ss_pred CCCh---hHHHHHHHHHHhcCChHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 387 EPQI---EHYGCLVDLLGRAGRFEEALEVVKGMKIEP---DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 387 ~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.++. ...+. +...+..|+.+-+.-+++.- ..+ |..-.+.+. ..+..|+.+-+..+++.-...+..+..-..
T Consensus 303 ~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~-~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t 379 (437)
T 1n11_A 303 MVDATTRMGYTP-LHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLH-QAAQQGHTDIVTLLLKNGASPNEVSSDGTT 379 (437)
T ss_dssp CTTCCCSSCCCH-HHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCSCCCCSSSCC
T ss_pred cCCCCCCCCCCH-HHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHH-HHHHCChHHHHHHHHHCcCCCCCCCCCCCC
Confidence 3321 11222 33445677777666666543 222 222222232 334567766554444432221111111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 461 MLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.+ ....+.|. .+..++++.....
T Consensus 380 ~l-~~A~~~g~-~~~~~~l~~~~~~ 402 (437)
T 1n11_A 380 PL-AIAKRLGY-ISVTDVLKVVTDE 402 (437)
T ss_dssp HH-HHHHHTTC-HHHHHHHHHHCCC
T ss_pred HH-HHHHHcCc-HHHHHHHHhcccc
Confidence 12 22234444 5566777766544
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.19 E-value=78 Score=24.56 Aligned_cols=62 Identities=10% Similarity=0.222 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCC--hhHHHHHHHHHhhcccCCCCC
Q 009663 288 SNALIDMYGKCGSLKEARRAFDRNSKKRLT---SWNSMINSFALHGQ--SENSICVFEEMMRCQDHNIRP 352 (529)
Q Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~p 352 (529)
...++.-|...|+.++|...++++..|... ....+..++-+.++ .+.+..++..+.. .++-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~---~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK---SSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH---TTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH---CCCcC
Confidence 455777788888888888888888766322 34444445544322 3445666666654 55443
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.84 E-value=1.5e+02 Score=25.07 Aligned_cols=21 Identities=5% Similarity=-0.151 Sum_probs=11.4
Q ss_pred HHHHhCCCcHHHHHHHHHHhH
Q 009663 361 LNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~ 381 (529)
+..+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 444555555666665555544
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.25 E-value=96 Score=24.04 Aligned_cols=66 Identities=9% Similarity=0.153 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC--cHHHHHHHHHHhHHhcCCCC
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG--LVEQGRAYFKLMTKTYRIEP 388 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p 388 (529)
....++.-|...|+.++|.+.++++.. ... -.......+..++-+.+ ..+.+..++..+.+. ++-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~---p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~-~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV---PHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC---GGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC---Ccc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcC
Confidence 456678889999999999999999842 111 12334455556666532 245667777777654 4433
No 306
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.20 E-value=96 Score=24.32 Aligned_cols=68 Identities=7% Similarity=0.012 Sum_probs=46.1
Q ss_pred hHHHHHHHHHH-HHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcC
Q 009663 94 ASSAFSLYRDM-VRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKS--GFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 94 ~~~a~~~~~~m-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g 163 (529)
.+.+++-+.+. .+.|. ..+. .-..++..+...+..-.|.++++.+.+. ++..+..|.-.-++.+...|
T Consensus 13 ~~~~~~~~~~~L~~~g~-r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 13 YDVLLERFKKILRQGGL-KYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHHTC-CCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 44555555444 44564 5543 4455666666677788899999999887 77777777666777777777
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.08 E-value=93 Score=29.92 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CH--HHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGMKIEP----DE--VVW-GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 457 (529)
...++.+++.|...+.++.|..+..+..++. +. ..| ..++..+.-.+++.+|.+.+..+.+.-|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 5677888899999999999999998884322 11 222 23445577788999999999999887775543
No 308
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=36.03 E-value=70 Score=23.95 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 12 LNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
....++.+|......-.+++|++.+.+.+...+..|.-..|..+...|
T Consensus 12 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 12 QRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345566677666778889999999999888888888888899999998
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.89 E-value=1.2e+02 Score=25.04 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhHHhcCCCCCh-hHH-----HHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 009663 370 VEQGRAYFKLMTKTYRIEPQI-EHY-----GCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLL 429 (529)
Q Consensus 370 ~~~a~~~~~~~~~~~~~~p~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 429 (529)
.+.|..+|+.+.+...+..+. ... -..+-.|.+.|.+++|.+++++. +..++..-...-+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL 154 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDL 154 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 466777777776653221111 111 12344577788888888888876 5344443333333
No 310
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=35.61 E-value=90 Score=31.32 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=48.5
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 406 FEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 406 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
.+.|.++.+.|| ...............|++..|.++.+.++..+|+|..+...++.+|.+.|.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 456677777775 233333445566789999999999999999999999998888888876653
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.32 E-value=94 Score=23.96 Aligned_cols=43 Identities=7% Similarity=0.145 Sum_probs=19.6
Q ss_pred HHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 17 LAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 17 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
+.+|......-.+++|++.+.+.+...+..|.-..|..+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333334444555555544444444444444444444444
No 312
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.55 E-value=50 Score=23.27 Aligned_cols=63 Identities=16% Similarity=0.050 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHH
Q 009663 31 QLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSA 97 (529)
Q Consensus 31 ~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 97 (529)
.|.+.+.+.|+- +..-...+-. ..... +.+.|.++++.++.....+|..++.++... |+..-|
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t-~~~~ar~Lld~L~~rG~~Af~~F~~aL~et-~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGS-RRDQARQLIIDLETRGSQALPLFISCLEDT-GQDMLA 87 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCC-HHHHHHHHHHHHTTSCTTHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCC-hHHHHHHHHHHHHHcChHHHHHHHHHHHHc-CcHHHH
Confidence 467777777643 2222222222 11123 789999999999998889999999999776 665544
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.78 E-value=57 Score=22.95 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=30.0
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHH
Q 009663 299 GSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 299 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 336 (529)
...+.|.++++.+..++..+|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887666655554
No 314
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.38 E-value=82 Score=23.91 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=38.1
Q ss_pred HHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 13 NQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
...++.+|......-.+++|++.+.+.+...+..|.-..|..+...|
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44566666666667789999999998888888888888889999888
No 315
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.65 E-value=2.3e+02 Score=24.30 Aligned_cols=56 Identities=7% Similarity=-0.071 Sum_probs=25.0
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 397 VDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
+...+..|+.+-+.-+++.-....+...-.+.+...+..|+.+-+..+++.-...+
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCC
Confidence 33344556655555554443211122011222333345666666666665544433
No 316
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.86 E-value=2.9e+02 Score=24.73 Aligned_cols=124 Identities=10% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCChhHHHHHhhcCCCC---ChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCC--------------
Q 009663 48 AFKLVRFCTLKLSNLTYARFIFDHLTTP---NTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQP-------------- 110 (529)
Q Consensus 48 ~~~ll~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-------------- 110 (529)
...++.-|...| +.++|.+.++++..| .......+..++-+.....+.+..++..+.+.|+.
T Consensus 14 ~~~ll~Ey~~~~-d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLN-DMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Q ss_pred --------CCCcchHHHHHHhCccCCCc----hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhh
Q 009663 111 --------QPNQFIYPHVLKSCPDVLES----RGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDE 175 (529)
Q Consensus 111 --------~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~ 175 (529)
-|....+-.-+-+.+-.... +-...+.+.+...|. .......++..+.+.. ..+.+.++|.+
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~--~~~fl~~vl~~l~~~~-g~~~l~~~~~~ 166 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK--AASLLLEILGLLCKSM-GPKKVGTLWRE 166 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC--HHHHHHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred hChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHc-CHHHHHHHHHH
No 317
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.33 E-value=1.5e+02 Score=27.54 Aligned_cols=332 Identities=10% Similarity=0.112 Sum_probs=152.6
Q ss_pred HHhCccCCCchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcC
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKSGFEQYPV--VETALVNSYSRSGNDIGIARKLFDEMSDRN---VVSWTAMISGYTRVG 195 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~g 195 (529)
+...+..|+.+- ++.+++.|..++.. .....+...+..| +.+-+.-+++.-...+ ..-. +.+...++.|
T Consensus 18 L~~Aa~~g~~~~----v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g 91 (437)
T 1n11_A 18 LHVASFMGHLPI----VKNLLQRGASPNVSNVKVETPLHMAARAG-HTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIG 91 (437)
T ss_dssp HHHHHHHTCHHH----HHHHHHTTCCSCCSSSCCCCHHHHHHHHT-CHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHT
T ss_pred HHHHHHCCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCC
Confidence 333445566554 44445566655432 1223445566778 8888887777654422 2222 2344456778
Q ss_pred CHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHH
Q 009663 196 DIKNAASLFDSMPDRD---VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVI 272 (529)
Q Consensus 196 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 272 (529)
+.+-+.-+++.-..++ ...++. +...+..|+.+-+..+++.-.. ....+....+ .+...+..|+.+-
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~g~t-~L~~A~~~g~~~~---- 161 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLEKEAS----QACMTKKGFT-PLHVAAKYGKVRV---- 161 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHTTCC----SCCCCTTSCC-HHHHHHHTTCHHH----
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHhCCCC----CcCCCCCCCC-HHHHHHHcCCHHH----
Confidence 8887777777644432 222333 3344566777666666553211 0111111112 2233345566544
Q ss_pred HHHHHHhCCCCCccH--HHHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHHhhccc
Q 009663 273 HGYVYRNGLDLDSFI--SNALIDMYGKCGSLKEARRAFDRNSKKRL---TSWNSMINSFALHGQSENSICVFEEMMRCQD 347 (529)
Q Consensus 273 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 347 (529)
.+.+.+.|..++... -...+...+..|+.+-+.-+++.-..++. ..++. +...+..|+.+-+..+++
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~------- 233 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARSLLQ------- 233 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHHHHH-------
T ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHHH-------
Confidence 344455565444321 11234455667888777777665443322 22222 334455676655554443
Q ss_pred CCCCCCH---HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-
Q 009663 348 HNIRPDG---VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ---IEHYGCLVDLLGRAGRFEEALEVVKGM-KIE- 419 (529)
Q Consensus 348 ~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~- 419 (529)
.|..++. ...+.+. ..+..|..+-...+++ . +..++ ....+ .+...++.|+.+-+.-+++.- .+.
T Consensus 234 ~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~----~-~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 234 YGGSANAESVQGVTPLH-LAAQEGHAEMVALLLS----K-QANGNLGNKSGLT-PLHLVAQEGHVPVADVLIKHGVMVDA 306 (437)
T ss_dssp TTCCTTCCCTTCCCHHH-HHHHTTCHHHHHHHHT----T-TCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred cCCCCCCCCCCCCCHHH-HHHHCCCHHHHHHHHh----c-CCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCccCCC
Confidence 3332221 1122233 2334566554444433 2 33332 11112 233445677777666666543 111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYK 489 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 489 (529)
.+..-.+. +...+..|+.+-+..+++.-...+..+..-...| ......|..+- .+.+.+.|..+
T Consensus 307 ~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~i----v~~Ll~~ga~~ 370 (437)
T 1n11_A 307 TTRMGYTP-LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTDI----VTLLLKNGASP 370 (437)
T ss_dssp CCSSCCCH-HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTTCCS
T ss_pred CCCCCCCH-HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHHH----HHHHHHCcCCC
Confidence 12111222 2333457777655555544222222222222222 22345566543 33444566544
No 318
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.00 E-value=1.8e+02 Score=24.51 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC----CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRP----DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGC 395 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 395 (529)
.--+..+....++++|..++++..+.-. +.++ ........+..-.....-.-+..+.+.+. . .+.+.....
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~-~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~ 96 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLE-DLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKS 96 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHH-hCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHH
Confidence 3457899999999999999999986322 2222 11112222332222223333444444442 2 445666677
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 009663 396 LVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.+..+.+.|+.++|.++|-+.
T Consensus 97 ~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 97 GTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHH
Confidence 778888999999999998665
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.95 E-value=92 Score=23.46 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcc-CcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 13 NQQVLAILERCN-HINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 13 ~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
...++.+|.... ..-.+++|++.+.+.+...+..|...-|..+...|
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344555665555 56778888888888877777777777788888877
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.89 E-value=1.9e+02 Score=22.19 Aligned_cols=60 Identities=7% Similarity=0.004 Sum_probs=37.7
Q ss_pred HHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 102 RDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 102 ~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
+.+.+.|. .++. .-..++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 16 ~~l~~~g~-r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 16 MSIKKNGL-KNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHCC---CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC-CCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34555664 3332 333445555555667788888888888777667777666777777777
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.78 E-value=99 Score=23.62 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=15.1
Q ss_pred HHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcC
Q 009663 34 SFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHL 72 (529)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~ 72 (529)
+.+.+.|+.+++.=. .++..+...+ ..-.|.++++.+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~-~~~sa~ei~~~l 47 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSM-AHPTADDIYKAL 47 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCS-SCCCHHHHHHHH
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCC-CCCCHHHHHHHH
Confidence 344445554444322 2233333333 344444454444
No 322
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=29.75 E-value=40 Score=21.17 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=18.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcc
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQF 115 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~ 115 (529)
-|++.|+..|.++...|-+||+..
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHh
Confidence 689999999999987765466543
No 323
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.68 E-value=1.4e+02 Score=20.60 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHH
Q 009663 269 GKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENS 335 (529)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 335 (529)
...+++.+.+.|+- +..-+..+- ......++|..+++.+...+...|..++.++...+...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 33556666666653 333333222 2356788899999999888888888888888877754433
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.26 E-value=1.9e+02 Score=22.16 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=40.4
Q ss_pred HHHHHCCCCCCCcchHHHHHHhCccCC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 102 RDMVRRGQPQPNQFIYPHVLKSCPDVL-ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 102 ~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
+.+.+.|. .++..= ..++..+...+ ..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 6 ~~l~~~g~-r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 6 QALKDAGL-KVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHTTC-CCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC-CCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34566665 544433 34455555555 67788999999888877777777777777777777
No 325
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.86 E-value=87 Score=25.83 Aligned_cols=206 Identities=6% Similarity=-0.012 Sum_probs=91.3
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHhCCCHHHHHHHHhhcCCCChh----HHHHHHHHHHHcCChhH
Q 009663 261 GHTGMLQLGKVIHGYVYRNGLDLDSF--ISNALIDMYGKCGSLKEARRAFDRNSKKRLT----SWNSMINSFALHGQSEN 334 (529)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~ 334 (529)
+..|+.+.+.. +.+.|..++.. .-...+...+..|+.+-+.-+++.-...+.. .++ .+...+..|+.+-
T Consensus 17 ~~~g~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t-~L~~A~~~~~~~~ 91 (240)
T 3eu9_A 17 TQYGIYERCRE----LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST-PLHWATRQGHLSM 91 (240)
T ss_dssp HHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC-HHHHHHHHTCHHH
T ss_pred HHcCChHHHHH----HHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC-hhHHHHHcCCHHH
Confidence 44566544443 44455544322 1123455667778888887777654432211 122 2333445566554
Q ss_pred HHHHHHHHhhcccCCCCCCH---HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCChHH
Q 009663 335 SICVFEEMMRCQDHNIRPDG---VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ---IEHYGCLVDLLGRAGRFEE 408 (529)
Q Consensus 335 a~~~~~~m~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~ 408 (529)
+..++ + .|..++. ...+.+. ..+..|+.+-+..+++. |..++ ....+.+..+ +..+...+
T Consensus 92 v~~Ll----~---~g~~~~~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~-----~~~~~~~~~~g~t~l~~a-~~~~~~~~ 157 (240)
T 3eu9_A 92 VVQLM----K---YGADPSLIDGEGCSCIH-LAAQFGHTSIVAYLIAK-----GQDVDMMDQNGMTPLMWA-AYRTHSVD 157 (240)
T ss_dssp HHHHH----H---TTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHT-----TCCTTCCCTTSCCHHHHH-HHHCCSST
T ss_pred HHHHH----H---cCCCCcccCCCCCCHHH-HHHHcCHHHHHHHHHhc-----CCCccccCCCCCcHHHHH-HHhCChHH
Confidence 44333 3 3433332 2222333 33345666544444432 33332 2222333333 33455455
Q ss_pred HHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 409 ALEVVKGMKIEPDEV---VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 409 A~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
..+++.+.+..++.. .-.+.+...+..|+.+-+..+++.-...+..+..-.. ......+.|+.+-+.-+++.-.+.
T Consensus 158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHhhhcc
Confidence 566666553332211 1112334445677877666665543222211211111 223345667777666666555444
Q ss_pred C
Q 009663 486 N 486 (529)
Q Consensus 486 ~ 486 (529)
+
T Consensus 237 ~ 237 (240)
T 3eu9_A 237 G 237 (240)
T ss_dssp -
T ss_pred C
Confidence 4
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.58 E-value=1.8e+02 Score=21.84 Aligned_cols=59 Identities=8% Similarity=0.119 Sum_probs=37.2
Q ss_pred HHHHCCCCCCCcchHHHHHHhCccCC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 103 DMVRRGQPQPNQFIYPHVLKSCPDVL-ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 103 ~m~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
.+.+.|. .++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 8 ~l~~~g~-r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 8 ELRKAGL-KVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHTTC-CCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCC-CCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3555664 44433 234445555555 67778888888888776667777666677777776
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.54 E-value=1.1e+02 Score=23.48 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcc-CcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 13 NQQVLAILERCN-HINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 13 ~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
...++.+|.... ..-.+++|++.+.+.+...+..|.-.-|..+...|
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344555555555 56778888888888877777777777788888887
No 328
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=26.36 E-value=1e+02 Score=28.11 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcCCChhHHHHHhhcCCCCC----hhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCC
Q 009663 48 AFKLVRFCTLKLSNLTYARFIFDHLTTPN----TYLYTAMITAYASQPAHASSAFSLYRDMVRRGQ 109 (529)
Q Consensus 48 ~~~ll~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~ 109 (529)
...+|.-|...| +.++|...++++..|+ .+.+..+..++-+.....+.+..++..+...++
T Consensus 15 ~~~ii~EY~~~~-D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 15 TETVVTEYLNSG-NANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 568899999999 9999999999998775 234444444554432234567777777877665
No 329
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.94 E-value=1.2e+02 Score=23.83 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcC
Q 009663 30 KQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHL 72 (529)
Q Consensus 30 ~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~ 72 (529)
+++.+.+.+.|+.+++. -..++..+...+ ..-.|.++++.+
T Consensus 18 ~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~-~h~sA~eI~~~l 58 (162)
T 4ets_A 18 ERFKKILRQGGLKYTKQ-REVLLKTLYHSD-THYTPESLYMEI 58 (162)
T ss_dssp HHHHHHHHHHTCCCCHH-HHHHHHHHHSCC-SCBCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHhCC-CCCCHHHHHHHH
Confidence 45555666677776554 344555555555 566666666655
No 330
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.94 E-value=2.7e+02 Score=22.71 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=38.2
Q ss_pred HHHHHHHHH---hCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCc-----hHHHHHHHHHHHhCC
Q 009663 215 WNSVIAGCT---QNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGML-----QLGKVIHGYVYRNGL 281 (529)
Q Consensus 215 ~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~ 281 (529)
+..+|+++. +..+.+.|+-++.+|... | .|....-..++.+.-..|.- ..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~---G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEA---G-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---T-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344555554 457888899999998877 7 77666666666665555532 233444444444554
No 331
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.82 E-value=1.4e+02 Score=19.75 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=30.4
Q ss_pred HHHHHHHHHcc-CcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 14 QQVLAILERCN-HINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 14 ~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
..++.+|...+ ..-.+.+|++.+.+.+...+..|....|..+...|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34445554443 45667788888877766667777777777777776
No 332
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.05 E-value=1.2e+02 Score=23.14 Aligned_cols=46 Identities=7% Similarity=-0.010 Sum_probs=31.8
Q ss_pred HHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 009663 13 NQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL 59 (529)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~ 59 (529)
...++.+|...+ .-.+++|++.+.+.+...+..|.-.-|..+...|
T Consensus 21 R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344555555555 5678888888877776677777777777777777
No 333
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.00 E-value=1.1e+02 Score=23.23 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=27.9
Q ss_pred HHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 119 HVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
.++..+...+..-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444455556667777777776666666666555666666666
No 334
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.57 E-value=1.4e+02 Score=24.44 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=9.6
Q ss_pred HHHHHhCCCHHHHHHHHhh
Q 009663 292 IDMYGKCGSLKEARRAFDR 310 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~ 310 (529)
+....+.|+.+-+.-+++.
T Consensus 214 l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHh
Confidence 3344555565555555443
No 335
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.91 E-value=2e+02 Score=24.07 Aligned_cols=113 Identities=11% Similarity=-0.025 Sum_probs=54.4
Q ss_pred cCCCChHHHHHHHHHHHHCCCCCCCcc-------hHHHHHHhC--ccCCCchHHHHHHHHHHHhC---------CC-Cch
Q 009663 89 SQPAHASSAFSLYRDMVRRGQPQPNQF-------IYPHVLKSC--PDVLESRGTKMVHTQIVKSG---------FE-QYP 149 (529)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~~l~~~~--~~~~~~~~a~~~~~~~~~~g---------~~-~~~ 149 (529)
+. |+.+....+++.+.+.|. .++.. -.+.+..+. ++.|+.+-+..+++.-...+ +. .+.
T Consensus 14 ~~-g~~~~v~~ll~~l~~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 14 SR-GSPDGLEGLLSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HH-TCGGGGTTHHHHHHHHTC-CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred Hh-CCHHHHHHHHHHHHhcCC-CcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 44 677776667776666554 44322 222333322 25566666666555443211 00 000
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhh----------------HHHHHHHHHhcCCHHHHHHHHh
Q 009663 150 VVETALVNSYSRSGNDIGIARKLFDEMSDRNVVS----------------WTAMISGYTRVGDIKNAASLFD 205 (529)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~----------------~~~ll~~~~~~g~~~~A~~~~~ 205 (529)
.-.+ .+...+..| +.+-+.-+++.-..++... -.+.+...+..|+.+-+.-+++
T Consensus 92 ~g~t-~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 92 RGQT-ALHIAIERR-CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp ESBC-HHHHHHHTT-CHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred CCCC-HHHHHHHcC-CHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1122 333444567 6776666666544332211 1223344455677666666666
No 336
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.84 E-value=2.4e+02 Score=21.38 Aligned_cols=39 Identities=5% Similarity=-0.057 Sum_probs=20.8
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCC
Q 009663 262 HTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS 300 (529)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 300 (529)
..+..-.|.++++.+.+.++..+..|..--++.+...|-
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 344455566666666555554455444445555555553
No 337
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.23 E-value=84 Score=26.00 Aligned_cols=208 Identities=10% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCc--cHHHHHHHHHHhCCCHHHHHHHHhhcCCCChh--HHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 009663 270 KVIHGYVYRNGLDLDS--FISNALIDMYGKCGSLKEARRAFDRNSKKRLT--SWNSMINSFALHGQSENSICVFEEMMRC 345 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~ 345 (529)
.++++.+.+.|..++. ..-...+...+..|+.+-+.-+++.-...+.. .-.+.+...+..|+.+-+..+++.-.
T Consensus 24 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-- 101 (237)
T 3b7b_A 24 VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ-- 101 (237)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC--
T ss_pred HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC--
Q ss_pred ccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 009663 346 QDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVV 424 (529)
Q Consensus 346 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 424 (529)
..+......-.+.+...+..|+.+-...+++.-. .+......-...+...+..|+.+-+.-+++.- .+......
T Consensus 102 --~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 176 (237)
T 3b7b_A 102 --MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS---DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176 (237)
T ss_dssp --CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTT
T ss_pred --CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC---CCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
-.+.+...++.|+.+-+.-+++.-...+..+..-...+ ......|+...+.++.+.+.+.
T Consensus 177 g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l-~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL-QCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHSCTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHH-HHHHHHHHHHHHHHHHHHhhcc
No 338
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.92 E-value=1.7e+02 Score=20.26 Aligned_cols=26 Identities=12% Similarity=-0.088 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
.+.-....+.+.|++++|+++.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455667778888888877666554
No 339
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=21.88 E-value=1.4e+02 Score=17.98 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=18.1
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 405 RFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 405 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
++++.++-+..||+.+......+|.. ..|+.+.|.+++
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~---t~gn~e~A~e~L 48 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIA---TGGDINAAIERL 48 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH---hCCCHHHHHHHH
Confidence 44555666666665333322222222 235666666554
No 340
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.84 E-value=1.5e+02 Score=18.14 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=17.6
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 405 RFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 405 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
++++-++-+..||+........+|.. ..|+.+.|++.+-
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~---~~Gdv~~Ave~L~ 46 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIA---TGGDVDAAVEKLR 46 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHH---HTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 34445555555554322222333322 2456666655543
No 341
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.11 E-value=3.2e+02 Score=22.23 Aligned_cols=182 Identities=8% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHH--HHHHHHhhcCCChhHHHHHhhcCCCCChhHHH--HHHHHHhcC
Q 009663 15 QVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAF--KLVRFCTLKLSNLTYARFIFDHLTTPNTYLYT--AMITAYASQ 90 (529)
Q Consensus 15 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~ll~~~~~~ 90 (529)
+.+..--..++.+..+.+.+.+.+.|..++..... +.+...+..| +.+-+..+++.-..++..... +.+...+..
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-LPSVVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Q ss_pred CCChHHHHHHHHHHH----HCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcC
Q 009663 91 PAHASSAFSLYRDMV----RRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVV---ETALVNSYSRSG 163 (529)
Q Consensus 91 ~~~~~~a~~~~~~m~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~g 163 (529)
|+.+-+..+++... ... ..+....+.+..++.... .++++.+.+.|..++... ....+...+..|
T Consensus 90 -~~~~~~~~Ll~~~~~~~~~~~--~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 90 -RSPTCLRALLDSAAPGTLDLE--ARNYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp -TCHHHHHHHHHHSCTTSCCTT--CCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred -CCHHHHHHHHHcCCCcccccc--ccCcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Q ss_pred CCHHHHHHHHhhCCCCChhhHH--HHHHHHHhcCCHHHHHHHHhh
Q 009663 164 NDIGIARKLFDEMSDRNVVSWT--AMISGYTRVGDIKNAASLFDS 206 (529)
Q Consensus 164 ~~~~~A~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~ 206 (529)
+.+-+.-+++.-..++..... +.+...+..|+.+-+.-+++.
T Consensus 162 -~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 162 -SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp -CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred -CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
No 342
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.01 E-value=1.1e+02 Score=22.74 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=22.6
Q ss_pred CccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 124 CPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 20 l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 20 LETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333445566666666666655555555555555565555
No 343
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.96 E-value=3.3e+02 Score=22.17 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=32.2
Q ss_pred HHHHHHHHH---hCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC
Q 009663 215 WNSVIAGCT---QNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG 264 (529)
Q Consensus 215 ~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~ 264 (529)
+..+|+++. +..+.+.|+-++.+|... |-.|....-..++.+.-..|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~---GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTA---GGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhhcc
Confidence 334555554 458899999999999776 77787666666666655444
No 344
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.12 E-value=1.2e+02 Score=25.01 Aligned_cols=65 Identities=22% Similarity=0.159 Sum_probs=39.0
Q ss_pred hHHHHHHHHhCC----CCCC-HHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 406 FEEALEVVKGMK----IEPD-EVVWG-----SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 406 ~~~A~~~~~~~~----~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
++.|+.+|+.++ +... ..... ..+..|.+.|.+++|.+++++....+|.+...-..|...-.+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 466777777661 1111 11122 23445899999999999999998876644444444544433333
No 345
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=20.07 E-value=2.6e+02 Score=20.37 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=23.2
Q ss_pred CchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCC
Q 009663 147 QYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGD 196 (529)
Q Consensus 147 ~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 196 (529)
++..+-...+.++.+.| +.+....+.+.+.+++..+-...+.++.+.|+
T Consensus 54 ~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQ-DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp SCHHHHHHHHHHHGGGC-SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 45555555556666666 44333333333333444444444444555444
Done!