BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009664
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
D++ DPY LF+ P+ K+++ NND+NP+WNE FEFI++ L + + D
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 338 IQSSELIGCAQVRLCELEPG 357
+ E +G A + ++ G
Sbjct: 82 VM-DETLGTATFTVSSMKVG 100
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 438 SQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRV 494
S+KR N+ +NP+WN+TF+F+++ ++L + D + + +G T++ +
Sbjct: 41 SRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSM 97
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
D++ DPY LF+ P+ K+++ NND+NP+WNE FEFI++ L + + D
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 338 IQSSELIGCAQVRLCELEPG 357
+ E +G A + ++ G
Sbjct: 97 VM-DETLGTATFTVSSMKVG 115
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 438 SQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRV 494
S+KR N+ +NP+WN+TF+F+++ ++L + D + + +G T++ +
Sbjct: 56 SRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSM 112
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 278 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337
D++ DPY LF+ P+ K+++ NND+NP+WNE FEFI++ L + + D
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 338 IQSSELIGCAQVRLCELEPG 357
+ E +G A + ++ G
Sbjct: 97 VM-DETLGTATFTVSSMKVG 115
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 438 SQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRV 494
S+KR N+ +NP+WN+TF+F+++ ++L + D + + +G T++ +
Sbjct: 56 SRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSM 112
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
P GTLEV LV AKGL + D + DPY L R +K+ ++ + P WNE F F
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT--TPEWNETFIFT 65
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYR 379
V E T L +I+D + + +G A + LEP +D +Y+
Sbjct: 66 VS-EGTTELKAKIFDKDVGTEDDAVGEATIP---LEP--VFVEGSIPPTAYNVVKDEEYK 119
Query: 380 GQVHLELLYCPFG 392
G++ + L + P G
Sbjct: 120 GEIWVALSFKPSG 132
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 451 PIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498
P WN+TF F V +G + L A+++D D + D +G + L V +EG
Sbjct: 56 PEWNETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFI 319
L VK+V L KD+ G SDPY L + E + ++KTI LNP WNE F F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDT 376
V + S L+ ++D+ + + +G V L L +P +
Sbjct: 83 V-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHKS 141
Query: 377 KYRGQVHLELLYCP 390
+ +G + L++ Y P
Sbjct: 142 RVKGFLRLKMAYMP 155
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 443 EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV-----IL 496
+ + LNP WN+ F F V H +L EV+D + + D++G+ + L+ + +
Sbjct: 65 KTIKKTLNPKWNEEFYFRVNPSNHRLLF-EVFDENRLTRDDFLGQVDVPLSHLPTEDPTM 123
Query: 497 EGEYTDCFELDGTKS------GKLKLHLKWMP 522
E YT L +S G L+L + +MP
Sbjct: 124 ERPYTFKDFLLRPRSHKSRVKGFLRLKMAYMP 155
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
S ++K VG L+VK+++A L D GKSDP+ +L L ++ T+ +LNP WN
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLL---ELGNDRLQTHTVYKNLNPEWN 61
Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ F F ++D L V ++D++G + + +G + L + G
Sbjct: 62 KVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG 104
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 431 IELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGRCIL 489
+EL D Q N LNP WN+ F F ++D +HD+L V+D D D++G+ +
Sbjct: 40 LELGNDRLQTHTVYKN--LNPEWNKVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAI 96
Query: 490 TLTRV 494
L +
Sbjct: 97 PLLSI 101
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 309
++S L + L+ +++AKGL D G +DPY L + P K+ K +KT+ N N
Sbjct: 19 EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 310 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
P+WNE ++ ED + L + + D++ +E IG + L +L+
Sbjct: 79 PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 441 RREVVNDCLNPIWNQTFDF---VVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 494
R + + + NP+WN+T + ED L V D D FG +++G +L ++
Sbjct: 69 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 309
++S L + L+ +++AKGL D G +DPY L + P K+ K +KT+ N N
Sbjct: 17 EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 76
Query: 310 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
P+WNE ++ ED + L + + D++ +E IG + L +L+
Sbjct: 77 PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKAN 127
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 441 RREVVNDCLNPIWNQTFDF---VVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 494
R + + + NP+WN+T + ED L V D D FG +++G +L ++
Sbjct: 67 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
+ + +V A+GL KD G SDPY + V + K++KTI +LNP+W E+F F +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFECHN- 74
Query: 324 STQHLVVRIYD-DEGIQS 340
S+ + VR+ D D+ I+S
Sbjct: 75 SSDRIKVRVLDEDDDIKS 92
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 23/138 (16%)
Query: 398 TNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457
T+ ++ S+T V G +A + + ++ ++KR + + LNP+W + F
Sbjct: 12 TSKWSAKISITV---VCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENF 68
Query: 458 DFVVEDGLHDMLIAEVWDHDTFGK------------DYMGRCILTLTRVILEGEYTDCFE 505
F + D + V D D K D++G+ I+ + L GE +
Sbjct: 69 HFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR--TLSGEMDVWYN 125
Query: 506 LD-----GTKSGKLKLHL 518
LD SG ++LH+
Sbjct: 126 LDKRTDKSAVSGAIRLHI 143
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 321
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F ++
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+ + L V I+D + ++ +G + EL
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMGRCILTLT 492
K+ S+++ + + LNP WN++F F ++ D L E+WD D T D+MG ++
Sbjct: 50 KNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVS 109
Query: 493 RVI 495
++
Sbjct: 110 ELM 112
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 321
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F ++
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+ + L V I+D + ++ +G + EL
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMGRCILTLT 492
K+ S+++ + + LNP WN++F F ++ D L E+WD D T D+MG ++
Sbjct: 51 KNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVS 110
Query: 493 RVI 495
++
Sbjct: 111 ELM 113
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF-IV 320
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
E + + L V I+D + ++ +G + EL+
Sbjct: 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ 268
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMG 485
K S+++ + + LNP WN+TF F +++ D L E+WD D T D+MG
Sbjct: 206 KSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 258
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 321
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F ++
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+ + L V I+D + ++ G + EL
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMG 485
K+ S+++ + + LNP WN++F F ++ D L E+WD D T D+ G
Sbjct: 52 KNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFXG 104
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 271 AKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF-IVEDESTQH 327
AK L D G SDPY L + P P E +K+KTI LNP WNE F F + E + +
Sbjct: 40 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 328 LVVRIYDDEGIQSSELIGCAQVRLCELE 355
L V I+D + ++ +G + EL+
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGISELQ 127
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMG 485
K S+++ + + LNP WN+TF F +++ D L E+WD D T D+MG
Sbjct: 65 KSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 117
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 139
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ + + LV+ +YD + ++IG +V + ++ G
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
V E Q +VV + D + I ++ IG
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 114
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 309
++S L G L V +++A L DL G SDPY A L K +K+ N LN
Sbjct: 143 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 202
Query: 310 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 349
P +NE F V ES ++ L + + D + I +E+IG +V
Sbjct: 203 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V+++QA L KD G SDPY +++ P +K ++K LNPI+NE F+F V
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 322 DESTQHLVVRIYDDEGIQSSELIG 345
+ + + L +YD + +LIG
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIG 106
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 252 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 309
++S L G L V +++A L DL G SDPY A L K +K+ N LN
Sbjct: 142 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 201
Query: 310 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 349
P +NE F V ES ++ L + + D + I +E+IG +V
Sbjct: 202 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 321
L V+++QA L KD G SDPY +++ P +K ++K LNPI+NE F+F V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 322 DESTQHLVVRIYDDEGIQSSELIG 345
+ + + L +YD + +LIG
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIG 105
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 320
+ V+++ GL KD++G SDPY V P+ + ++KTI LNP WNE F V
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDTK 377
+ L+ ++D+ + + +G V L L P ++
Sbjct: 82 HPQQ-HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSR 140
Query: 378 YRGQVHLELLYCP 390
+G + L++ Y P
Sbjct: 141 VKGYLRLKMTYLP 153
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 320
+ VK++ GL KD++G SDPY V P+ + ++KTI LNP WNE F V
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDTK 377
+ ++ ++D+ + + +G V L L P ++
Sbjct: 70 LPQR-HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR 128
Query: 378 YRGQVHLELLYCP 390
+G + L++ Y P
Sbjct: 129 VKGYLRLKMTYLP 141
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVE 321
+ V + +A+ L D G SDPY L + P P +K++T+ LNP+WNE F F ++
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 322 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+ + L V ++D + ++ +G + EL
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHD-TFGKDYMG 485
++ ++++ V LNP+WN+TF F ++ G + L EVWD D T D+MG
Sbjct: 54 RNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTSRNDFMG 106
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF---EF 318
TL VK+++A+ L KD G SDP+ +++ P + ++K +LNP WNE F F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
E + L +++ D + ++ IG + L +++
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 443 EVVNDCLNPIWNQTF---DFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496
+V LNP WN+TF F E + +L +V D+D F + D +G + L +V L
Sbjct: 66 KVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 478
KA K E+ + + D LNP WN F ++D D+L ++D D
Sbjct: 400 KACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459
Query: 479 FG-KDYMGRCILTLTRVILEGE 499
F D++GR + + ++ E E
Sbjct: 460 FSPDDFLGRTEIPVAKIRTEQE 481
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
+G L V +++A L GKS+PY + + ++ ++TI + LNP WN + +F +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQV 349
+D L + ++D + + +G ++
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
+ + ++ AK L KD DP+A + V + + T+ N L+P WN+H++ V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYV--G 63
Query: 324 STQHLVVRIYDDEGI---QSSELIGCAQV 349
T + + +++ + I Q + +GC ++
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRL 92
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 443 EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF----GKDYMGRCILTLTRVI 495
+ V + L+P WNQ +D V G D + VW+H G ++G C+ L+ I
Sbjct: 44 DTVKNTLDPKWNQHYDLYV--GKTDSITISVWNHKKIHKKQGAGFLG-CVRLLSNAI 97
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDP-YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
G L V +V++ K GK DP +V+F + KK+K ++N+LNP+WNE EF +
Sbjct: 7 GMLRV-IVESASNIPKTKFGKPDPIVSVIFKD----EKKKTKKVDNELNPVWNEILEFDL 61
Query: 321 ED---ESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+ + L + + D E I ++LIG A V L +L
Sbjct: 62 RGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDL 98
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L + ++ AK L KD DP+A + V + + T+ N L+P WN+H++ +
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYIGKS 63
Query: 324 STQHLVVRIYDDEGI---QSSELIGCAQV 349
+ + + +++ + I Q + +GC ++
Sbjct: 64 DS--VTISVWNHKKIHKKQGAGFLGCVRL 90
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 443 EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF----GKDYMGRCILTLTRVILEG 498
+ V + L+P WNQ +D + G D + VW+H G ++G C+ L+ I
Sbjct: 42 DTVKNTLDPKWNQHYDLYI--GKSDSVTISVWNHKKIHKKQGAGFLG-CVRLLSNAINRL 98
Query: 499 EYTDCFELDGTKSG 512
+ T LD K G
Sbjct: 99 KDTGYQRLDLCKLG 112
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-----------LPEKTKKSKTINNDLN 309
+G L + ++QA+ L +D G SDP+ +++ P E +++K + LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 310 PIWNE---HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLC 352
P WN+ + +E + L V ++D + S++ +G + L
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 439 QKRREVVNDCLNPIWNQTFDF---VVEDGLHDMLIAEVWDHDTF-GKDYMGRCILTLT 492
++R + V LNP WNQT + +E + L VWD+D F D++G ++ L+
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK-----SKTINNDLNPIWNEH 315
++ V +++A+ L D+ G SDPY ++ L K K+ + T +LNPI+NE
Sbjct: 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVW---LMYKDKRVEKKKTVTKKRNLNPIFNES 71
Query: 316 FEFIVEDESTQH--LVVRIYDDEGIQSSELIG 345
F F + E + +++ + D + + +++IG
Sbjct: 72 FAFDIPTEKLRETTIIITVMDKDKLSRNDVIG 103
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
V E Q +VV + D + I ++ IG
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 112
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
V E Q +VV + D + I ++ IG
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 105
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
V E Q +VV + D + I ++ IG
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 104
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog
E3 Ubiquitin Protein Ligase
Length = 173
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L++ ++ AK NK PY + V +KT+K NN +P W + IV
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEK---CNNTNSPKWKQPLTVIVTPV 94
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCE 353
S H R++ + ++S L+G A + + E
Sbjct: 95 SKLHF--RVWSHQTLKSDVLLGTAALDIYE 122
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINND-LNPIWNEH 315
GT+E+K++ A+ L++K + Y + + LP K K+KT+NN+ ++P +NE+
Sbjct: 649 AGTIEIKIISAQFLSDKQI----SSYVEVEMYGLPTDTVRKKFKTKTVNNNGMDPYYNEN 704
Query: 316 FEFIVEDESTQHL-VVRIYDDEGIQSSELIGCAQVRLCELEPG 357
F+ + L VVRI +E + IG + L ++PG
Sbjct: 705 -AFVFKKVVLPDLAVVRIIVNE--DGGKFIGHRLMPLDGIKPG 744
>pdb|2BVL|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 543
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 255 ELELKPVGTLEVKLV-QAKGLTNKDLIGKSDPY-AVLFVRPLPEKTKKSKTINNDLNPIW 312
++E P LEVK+ +KG+ N+ LI D Y + L V+ + + K +NN LNP
Sbjct: 365 DMEASP---LEVKIAFNSKGIINQGLISVKDSYCSNLIVKQIE---NRYKILNNSLNPAI 418
Query: 313 NEHFEF 318
+E +F
Sbjct: 419 SEDNDF 424
>pdb|2BVM|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 542
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 255 ELELKPVGTLEVKLV-QAKGLTNKDLIGKSDPY-AVLFVRPLPEKTKKSKTINNDLNPIW 312
++E P LEVK+ +KG+ N+ LI D Y + L V+ + + K +NN LNP
Sbjct: 365 DMEASP---LEVKIAFNSKGIINQGLISVKDSYCSNLIVKQIE---NRYKILNNSLNPAI 418
Query: 313 NEHFEF 318
+E +F
Sbjct: 419 SEDNDF 424
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 283 SDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFIVEDESTQH--LVVRIYDDEGI 338
SDPY +++ P ++ + KT LNP++++ F+F V Q L V + + G
Sbjct: 44 SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103
Query: 339 QSSE--LIGCAQVRLCELE 355
S + L+G V L E
Sbjct: 104 LSKDKGLLGKVLVALASEE 122
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 436 DASQKRREVVNDCLNPIWNQTFDFV---VEDGLHDMLIAEVWDHDTFGK---DYMGRCIL 489
D +++R + V L P WNQTF + + ML +WD + +++G ++
Sbjct: 56 DKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILI 115
Query: 490 TLTRVILEGE 499
L +L+ E
Sbjct: 116 ELETALLDDE 125
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT----KKSKTINNDLNPIWNEHF 316
V ++ AK L +++ +PY ++ LP+++ +++KT+ L P WN+ F
Sbjct: 25 VTILGAKDLPSREDGRPRNPYVKIYF--LPDRSDKNKRRTKTVKKTLEPKWNQTF 77
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 436 DASQKRREVVNDCLNPIWNQTFDFV---VEDGLHDMLIAEVWDHDTFGK---DYMGRCIL 489
D +++R + V L P WNQTF + + ML +WD + +++G ++
Sbjct: 53 DKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILI 112
Query: 490 TLTRVILEGE 499
L +L+ E
Sbjct: 113 ELETALLDDE 122
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 264 LEVKLVQAKGLT-------NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
L V++++A+ L ++ + S+PY + + P + +K++ P++ E +
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 317 EFIVE--DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
F + + + L++ + D + +IG V LCE++
Sbjct: 88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVD 128
>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
Length = 555
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 286 YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338
+ VRP P T+ S N ++ +W+ ++ +E ++ VV+I D++G+
Sbjct: 276 FGCNLVRPRP-FTEVSALYGNKMSSVWSGGLAYMYFEEENEYGVVKINDNDGV 327
>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaripentaose
pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaritriose And Laminaritetraose
Length = 555
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 286 YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338
+ VRP P T+ S N ++ +W+ ++ +E ++ VV+I D++G+
Sbjct: 276 FGCNLVRPRP-FTEVSALYGNKMSSVWSGGLAYMYFEEENEYGVVKINDNDGV 327
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 264 LEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWNEHFEF 318
L V+++ + L NK+ DP ++ + + T +T NN NP W+ FEF
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 319 --IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
V D + +V YD ++ IG + + L+ G
Sbjct: 559 EVTVPDLALVRFMVEDYDSSS--KNDFIGQSTIPWNSLKQG 597
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 264 LEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWNEHFEF 318
L V+++ + L NK+ DP ++ + + T +T NN NP W+ FEF
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 319 --IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
V D + +V YD ++ IG + + L+ G
Sbjct: 557 EVTVPDLALVRFMVEDYDSSS--KNDFIGQSTIPWNSLKQG 595
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 135 GGSGVTMELEMQWDANSSIILAIKTRLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFA 193
GG G+ +E + +D S+ LA++ R G VA V+N + G+ RL P PG +
Sbjct: 165 GGRGLILEGFVPFDREVSL-LAVRGRTGEVAFYPLVENRHWGGILRLSLAPA----PGAS 219
Query: 194 ------AVSYSLREKKKLDF 207
A +Y+LR + LD+
Sbjct: 220 EALQKKAEAYALRAMEALDY 239
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 266 VKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
V + +A+GL D SDPY + + LPEK K KT + L+P ++E F F
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTI--LPEKKHKVKTRVLRKTLDPAFDETFTF 79
>pdb|3UAJ|H Chain H, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UAJ|C Chain C, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UC0|H Chain H, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
pdb|3UC0|I Chain I, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
Length = 236
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 56 AEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFS 115
++FY SW+ S + L W+ + ++ Y N + + SV+ Q LS++ +
Sbjct: 30 SDFYWSWLRQSPGKGLEWIGYAHSRVSAYYNPSLKSRVTISVDTSKNQIS-LRLSAVTAA 88
Query: 116 KFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVAL----PVQVKN 171
L A Q TG +GV+ + W + +I+++ + G ++ P
Sbjct: 89 DTALYYCARQGTGT-------TGVSEDSFDLWGQGTKVIVSLASTKGPSVFPLAPSSKST 141
Query: 172 IGFTGVFRLIFRPLVDEFPGFAAVSY 197
G T + + D FP VS+
Sbjct: 142 SGGTAALGCLVK---DYFPEPVTVSW 164
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 292 RPLPEKTKKSKTINNDLNPIWNEHFEFIVE----DESTQHLVVRIYDDE---GIQSSELI 344
+P T+ S+ ++N L P++NE F ++ E Q+++V + + + +S I
Sbjct: 203 KPFGRDTETSEQLSNQLKPLFNERQVFRIDHYLGKEMVQNIIVTRFANRVFSALWNSNSI 262
Query: 345 GCAQVRLCE 353
C Q+ E
Sbjct: 263 ACVQITFKE 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,138,849
Number of Sequences: 62578
Number of extensions: 632993
Number of successful extensions: 1569
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 98
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)