Query 009664
Match_columns 529
No_of_seqs 412 out of 2816
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 15:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 1.9E-57 4E-62 480.6 35.6 444 66-525 218-696 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 1.4E-29 3E-34 257.9 21.9 225 257-493 162-393 (421)
3 KOG2059 Ras GTPase-activating 99.9 2.5E-23 5.4E-28 210.9 16.7 250 261-526 4-281 (800)
4 cd04016 C2_Tollip C2 domain pr 99.9 1E-22 2.3E-27 171.5 14.2 119 261-388 1-121 (121)
5 cd08682 C2_Rab11-FIP_classI C2 99.9 3.4E-21 7.3E-26 165.5 13.4 119 264-387 1-126 (126)
6 cd08681 C2_fungal_Inn1p-like C 99.9 6.6E-21 1.4E-25 161.8 12.9 117 262-388 1-118 (118)
7 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.8E-20 3.9E-25 159.8 14.7 121 263-390 1-121 (121)
8 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.6E-20 7.8E-25 157.1 14.2 116 263-384 1-125 (126)
9 cd08375 C2_Intersectin C2 doma 99.8 5.1E-20 1.1E-24 159.5 15.5 119 259-388 12-135 (136)
10 cd08376 C2B_MCTP_PRT C2 domain 99.8 4.5E-20 9.8E-25 156.2 14.8 115 263-389 1-115 (116)
11 cd08395 C2C_Munc13 C2 domain t 99.8 3.2E-20 7E-25 155.9 13.6 109 263-372 1-116 (120)
12 cd04036 C2_cPLA2 C2 domain pre 99.8 4.4E-20 9.5E-25 156.9 14.6 116 264-388 2-117 (119)
13 cd04019 C2C_MCTP_PRT_plant C2 99.8 5.2E-20 1.1E-24 161.8 14.8 126 263-391 1-134 (150)
14 cd08677 C2A_Synaptotagmin-13 C 99.8 2.2E-20 4.8E-25 154.5 11.1 109 255-366 7-118 (118)
15 cd04022 C2A_MCTP_PRT_plant C2 99.8 5.1E-20 1.1E-24 158.4 13.1 121 263-389 1-126 (127)
16 cd04024 C2A_Synaptotagmin-like 99.8 7.9E-20 1.7E-24 157.6 13.9 123 262-388 1-128 (128)
17 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.7E-19 3.6E-24 153.2 14.2 119 264-388 2-121 (121)
18 cd08381 C2B_PI3K_class_II C2 d 99.8 9.9E-20 2.1E-24 154.9 12.4 105 261-366 12-121 (122)
19 cd08678 C2_C21orf25-like C2 do 99.8 2.8E-19 6E-24 153.5 15.2 122 264-391 1-122 (126)
20 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1.4E-19 3.1E-24 154.7 13.3 121 263-386 1-122 (123)
21 cd08400 C2_Ras_p21A1 C2 domain 99.8 3.4E-19 7.3E-24 152.7 15.4 122 261-390 3-124 (126)
22 cd04028 C2B_RIM1alpha C2 domai 99.8 2.2E-19 4.7E-24 155.9 14.2 110 260-370 27-140 (146)
23 cd08391 C2A_C2C_Synaptotagmin_ 99.8 2.2E-19 4.8E-24 153.2 13.7 115 262-388 1-121 (121)
24 cd08393 C2A_SLP-1_2 C2 domain 99.8 2E-19 4.3E-24 153.9 12.5 110 258-367 11-125 (125)
25 cd08378 C2B_MCTP_PRT_plant C2 99.8 3E-19 6.6E-24 151.6 13.2 114 263-388 1-119 (121)
26 KOG1030 Predicted Ca2+-depende 99.8 1.1E-19 2.3E-24 155.9 10.2 97 259-359 3-99 (168)
27 cd08387 C2A_Synaptotagmin-8 C2 99.8 3.6E-19 7.8E-24 152.5 12.4 111 257-367 11-123 (124)
28 cd04029 C2A_SLP-4_5 C2 domain 99.8 3.9E-19 8.5E-24 151.9 12.4 111 257-367 10-125 (125)
29 cd04015 C2_plant_PLD C2 domain 99.8 1.1E-18 2.4E-23 155.1 15.1 123 261-389 6-158 (158)
30 cd04044 C2A_Tricalbin-like C2 99.8 6.8E-19 1.5E-23 150.9 13.1 122 261-390 1-124 (124)
31 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.4E-18 5.3E-23 146.3 14.9 118 262-388 1-118 (119)
32 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.1E-18 2.4E-23 149.5 12.7 110 258-367 12-123 (124)
33 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1.7E-18 3.7E-23 150.3 13.9 123 263-389 1-133 (133)
34 cd04046 C2_Calpain C2 domain p 99.8 3.6E-18 7.7E-23 146.5 15.6 123 260-390 1-123 (126)
35 cd08680 C2_Kibra C2 domain fou 99.8 8.7E-19 1.9E-23 148.6 11.5 111 256-366 8-124 (124)
36 cd04010 C2B_RasA3 C2 domain se 99.8 1.8E-18 3.8E-23 151.2 13.0 106 263-370 1-124 (148)
37 cd08388 C2A_Synaptotagmin-4-11 99.8 1.9E-18 4.1E-23 148.3 12.9 111 257-367 11-127 (128)
38 cd08392 C2A_SLP-3 C2 domain fi 99.8 2.3E-18 5.1E-23 147.3 12.7 110 257-366 10-127 (128)
39 cd04041 C2A_fungal C2 domain f 99.8 9.8E-19 2.1E-23 146.5 10.0 103 262-367 1-107 (111)
40 cd04017 C2D_Ferlin C2 domain f 99.8 5.7E-18 1.2E-22 147.1 15.0 120 263-391 2-134 (135)
41 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 5.3E-18 1.1E-22 144.3 13.6 118 264-387 2-120 (121)
42 cd08389 C2A_Synaptotagmin-14_1 99.8 3.7E-18 8E-23 145.7 12.2 110 257-367 11-123 (124)
43 cd04050 C2B_Synaptotagmin-like 99.8 4.5E-18 9.7E-23 141.0 12.2 100 263-368 1-102 (105)
44 cd04014 C2_PKC_epsilon C2 doma 99.8 8.8E-18 1.9E-22 145.5 14.5 116 261-390 3-130 (132)
45 cd08373 C2A_Ferlin C2 domain f 99.8 1.2E-17 2.5E-22 143.7 15.0 117 268-393 2-120 (127)
46 cd08382 C2_Smurf-like C2 domai 99.8 7.1E-18 1.5E-22 144.0 13.4 118 264-386 2-122 (123)
47 cd08386 C2A_Synaptotagmin-7 C2 99.8 4E-18 8.6E-23 146.3 11.9 111 257-367 11-124 (125)
48 cd08685 C2_RGS-like C2 domain 99.8 3.7E-18 8E-23 144.3 11.4 106 260-366 10-119 (119)
49 cd04043 C2_Munc13_fungal C2 do 99.8 1.4E-17 3E-22 143.1 14.7 117 263-389 2-121 (126)
50 cd04030 C2C_KIAA1228 C2 domain 99.8 6.5E-18 1.4E-22 145.4 12.1 110 257-366 11-126 (127)
51 cd08521 C2A_SLP C2 domain firs 99.8 8.1E-18 1.8E-22 144.0 12.0 109 258-366 10-123 (123)
52 cd08390 C2A_Synaptotagmin-15-1 99.7 1.5E-17 3.2E-22 142.3 13.1 111 257-367 9-122 (123)
53 cd04039 C2_PSD C2 domain prese 99.7 9.4E-18 2E-22 139.2 11.0 94 262-358 1-99 (108)
54 cd04027 C2B_Munc13 C2 domain s 99.7 2.1E-17 4.6E-22 141.9 13.5 115 263-386 2-127 (127)
55 cd04031 C2A_RIM1alpha C2 domai 99.7 1.4E-17 3.1E-22 142.9 12.2 109 258-367 12-125 (125)
56 cd08676 C2A_Munc13-like C2 dom 99.7 2.2E-17 4.7E-22 144.8 12.0 103 259-366 25-153 (153)
57 cd08688 C2_KIAA0528-like C2 do 99.7 1.9E-17 4.2E-22 138.4 10.6 101 264-367 1-108 (110)
58 cd08690 C2_Freud-1 C2 domain f 99.7 1.7E-16 3.6E-21 138.9 15.7 123 262-389 4-137 (155)
59 cd04040 C2D_Tricalbin-like C2 99.7 8.8E-17 1.9E-21 135.8 13.6 114 264-384 1-114 (115)
60 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 4.2E-17 9.2E-22 145.5 12.1 109 259-367 24-137 (162)
61 COG5038 Ca2+-dependent lipid-b 99.7 1.1E-15 2.4E-20 164.3 24.6 297 219-523 655-1163(1227)
62 cd04051 C2_SRC2_like C2 domain 99.7 4.3E-17 9.3E-22 139.8 11.4 115 263-384 1-125 (125)
63 cd08406 C2B_Synaptotagmin-12 C 99.7 8.1E-17 1.8E-21 139.0 12.4 110 257-368 10-123 (136)
64 cd08394 C2A_Munc13 C2 domain f 99.7 7.5E-17 1.6E-21 134.8 11.4 101 261-370 1-103 (127)
65 cd04032 C2_Perforin C2 domain 99.7 1.1E-16 2.3E-21 136.0 12.6 95 258-356 24-119 (127)
66 cd08677 C2A_Synaptotagmin-13 C 99.7 3.2E-17 7E-22 135.7 8.8 115 380-506 1-118 (118)
67 cd08675 C2B_RasGAP C2 domain s 99.7 8.7E-17 1.9E-21 139.5 11.9 106 264-370 1-122 (137)
68 cd04049 C2_putative_Elicitor-r 99.7 9.7E-17 2.1E-21 137.4 11.6 104 262-368 1-108 (124)
69 cd08691 C2_NEDL1-like C2 domai 99.7 4.3E-16 9.2E-21 134.3 15.2 118 263-386 2-136 (137)
70 cd08407 C2B_Synaptotagmin-13 C 99.7 3.9E-17 8.4E-22 140.8 8.6 111 256-368 9-125 (138)
71 PLN03008 Phospholipase D delta 99.7 1.8E-16 3.9E-21 167.9 14.9 129 260-394 12-182 (868)
72 cd04052 C2B_Tricalbin-like C2 99.7 2.1E-16 4.5E-21 132.3 11.7 102 418-523 9-111 (111)
73 cd08384 C2B_Rabphilin_Doc2 C2 99.7 6.2E-17 1.3E-21 140.4 8.6 110 257-368 8-121 (133)
74 cd04038 C2_ArfGAP C2 domain pr 99.7 2.6E-16 5.6E-21 137.2 11.7 93 261-358 1-93 (145)
75 cd04045 C2C_Tricalbin-like C2 99.7 2.3E-16 5E-21 133.8 11.1 103 262-368 1-103 (120)
76 cd04018 C2C_Ferlin C2 domain t 99.7 2.7E-16 5.7E-21 137.7 11.6 102 263-367 1-124 (151)
77 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.7E-16 3.6E-21 135.8 10.0 119 379-507 1-125 (125)
78 cd04052 C2B_Tricalbin-like C2 99.7 2.6E-16 5.7E-21 131.7 10.8 102 279-391 9-111 (111)
79 cd04029 C2A_SLP-4_5 C2 domain 99.7 2.2E-16 4.8E-21 134.9 10.4 119 379-507 1-125 (125)
80 cd04028 C2B_RIM1alpha C2 domai 99.7 3.3E-16 7.2E-21 136.0 10.9 122 375-509 13-139 (146)
81 cd08408 C2B_Synaptotagmin-14_1 99.7 6.7E-16 1.5E-20 134.0 12.8 112 256-368 9-125 (138)
82 cd04011 C2B_Ferlin C2 domain s 99.7 4.3E-16 9.3E-21 130.5 11.2 99 262-367 4-109 (111)
83 cd08381 C2B_PI3K_class_II C2 d 99.7 2.7E-16 5.9E-21 133.7 10.0 115 380-507 2-122 (122)
84 cd04009 C2B_Munc13-like C2 dom 99.7 6.3E-16 1.4E-20 133.8 12.2 98 259-356 13-118 (133)
85 cd04016 C2_Tollip C2 domain pr 99.7 5E-16 1.1E-20 130.9 11.1 96 419-520 19-121 (121)
86 cd08392 C2A_SLP-3 C2 domain fi 99.7 4.3E-16 9.4E-21 133.3 10.6 119 379-507 1-128 (128)
87 cd08692 C2B_Tac2-N C2 domain s 99.7 3.6E-16 7.8E-21 132.7 9.9 112 255-367 7-122 (135)
88 cd08403 C2B_Synaptotagmin-3-5- 99.7 2E-16 4.3E-21 137.3 8.3 110 257-368 9-122 (134)
89 cd08404 C2B_Synaptotagmin-4 C2 99.7 1.9E-16 4.1E-21 137.8 7.9 109 258-368 11-123 (136)
90 cd08402 C2B_Synaptotagmin-1 C2 99.7 1.4E-15 3E-20 132.4 13.2 110 257-368 10-123 (136)
91 cd04013 C2_SynGAP_like C2 doma 99.7 1.9E-15 4.2E-20 130.7 13.9 125 259-391 8-141 (146)
92 cd08405 C2B_Synaptotagmin-7 C2 99.7 7.9E-16 1.7E-20 133.9 11.6 110 257-368 10-123 (136)
93 cd04021 C2_E3_ubiquitin_ligase 99.7 2.1E-15 4.5E-20 129.0 13.7 118 262-386 2-124 (125)
94 cd04037 C2E_Ferlin C2 domain f 99.7 5.5E-16 1.2E-20 132.4 9.7 92 263-355 1-92 (124)
95 cd08409 C2B_Synaptotagmin-15 C 99.7 2.4E-16 5.2E-21 136.9 7.7 111 257-368 10-124 (137)
96 cd08410 C2B_Synaptotagmin-17 C 99.6 2.2E-15 4.8E-20 130.7 12.8 111 257-368 9-123 (135)
97 cd04048 C2A_Copine C2 domain f 99.6 1.3E-15 2.7E-20 129.6 10.6 100 268-367 6-113 (120)
98 cd08682 C2_Rab11-FIP_classI C2 99.6 1.4E-15 3E-20 130.5 10.6 98 417-519 15-126 (126)
99 cd08383 C2A_RasGAP C2 domain ( 99.6 4.2E-15 9.2E-20 125.9 13.4 114 264-388 2-117 (117)
100 cd04026 C2_PKC_alpha_gamma C2 99.6 2.4E-15 5.3E-20 130.0 12.0 106 262-368 13-121 (131)
101 cd04035 C2A_Rabphilin_Doc2 C2 99.6 2.8E-15 6.2E-20 128.1 12.2 107 258-365 11-122 (123)
102 KOG0696 Serine/threonine prote 99.6 1.6E-16 3.4E-21 153.5 4.6 108 260-368 178-288 (683)
103 cd08686 C2_ABR C2 domain in th 99.6 6.6E-15 1.4E-19 121.5 13.5 96 264-366 1-107 (118)
104 cd08391 C2A_C2C_Synaptotagmin_ 99.6 3E-15 6.6E-20 127.6 11.7 96 420-520 26-121 (121)
105 cd04036 C2_cPLA2 C2 domain pre 99.6 2.5E-15 5.5E-20 127.5 10.7 100 419-520 18-117 (119)
106 cd00276 C2B_Synaptotagmin C2 d 99.6 9.6E-16 2.1E-20 133.2 7.3 108 259-368 11-122 (134)
107 cd04042 C2A_MCTP_PRT C2 domain 99.6 6.2E-15 1.3E-19 125.6 11.8 101 417-522 16-121 (121)
108 KOG1013 Synaptic vesicle prote 99.6 1E-16 2.2E-21 150.2 0.8 231 253-493 84-328 (362)
109 cd00275 C2_PLC_like C2 domain 99.6 2.5E-14 5.5E-19 123.1 15.4 119 263-388 3-127 (128)
110 cd08376 C2B_MCTP_PRT C2 domain 99.6 6.5E-15 1.4E-19 124.5 11.4 97 419-521 18-115 (116)
111 cd08407 C2B_Synaptotagmin-13 C 99.6 3.5E-15 7.6E-20 128.7 9.3 105 379-493 1-112 (138)
112 cd08379 C2D_MCTP_PRT_plant C2 99.6 9.4E-15 2E-19 124.0 11.4 94 417-516 19-125 (126)
113 cd08680 C2_Kibra C2 domain fou 99.6 3.1E-15 6.8E-20 126.9 8.4 116 381-506 2-124 (124)
114 cd08685 C2_RGS-like C2 domain 99.6 3.8E-15 8.1E-20 126.0 8.5 88 419-506 29-119 (119)
115 cd04030 C2C_KIAA1228 C2 domain 99.6 6.5E-15 1.4E-19 126.7 10.0 120 378-507 1-127 (127)
116 cd08681 C2_fungal_Inn1p-like C 99.6 6.1E-15 1.3E-19 125.1 9.6 98 418-520 18-118 (118)
117 cd08387 C2A_Synaptotagmin-8 C2 99.6 6.8E-15 1.5E-19 125.9 9.4 117 379-507 2-123 (124)
118 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 7.6E-15 1.7E-19 130.9 9.8 131 379-509 1-139 (162)
119 cd08375 C2_Intersectin C2 doma 99.6 1.5E-14 3.3E-19 125.2 11.4 98 418-520 32-135 (136)
120 cd04024 C2A_Synaptotagmin-like 99.6 1.3E-14 2.8E-19 125.0 10.5 97 419-520 21-128 (128)
121 cd08378 C2B_MCTP_PRT_plant C2 99.6 1.7E-14 3.8E-19 122.4 10.8 95 421-520 16-119 (121)
122 cd04019 C2C_MCTP_PRT_plant C2 99.6 1.6E-14 3.4E-19 127.1 10.7 103 417-524 16-135 (150)
123 cd08521 C2A_SLP C2 domain firs 99.6 1.4E-14 3E-19 123.9 10.0 117 380-506 1-123 (123)
124 PLN03200 cellulose synthase-in 99.6 1.2E-14 2.6E-19 168.0 12.0 121 259-390 1977-2101(2102)
125 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.5E-14 3.3E-19 123.8 9.7 117 379-507 2-123 (124)
126 cd04031 C2A_RIM1alpha C2 domai 99.6 1.3E-14 2.9E-19 124.4 9.3 118 379-507 2-125 (125)
127 cd04047 C2B_Copine C2 domain s 99.6 3.1E-14 6.8E-19 119.1 10.9 92 267-359 5-103 (110)
128 cd08678 C2_C21orf25-like C2 do 99.6 6.5E-14 1.4E-18 120.1 12.9 102 418-523 14-122 (126)
129 cd08401 C2A_RasA2_RasA3 C2 dom 99.5 3.8E-14 8.2E-19 120.3 11.1 96 420-520 20-121 (121)
130 cd08395 C2C_Munc13 C2 domain t 99.5 3.1E-14 6.7E-19 119.7 10.4 89 420-508 18-112 (120)
131 cd08406 C2B_Synaptotagmin-12 C 99.5 5.5E-15 1.2E-19 127.6 5.6 118 380-509 2-124 (136)
132 cd08400 C2_Ras_p21A1 C2 domain 99.5 7.3E-14 1.6E-18 119.6 12.4 99 420-523 20-125 (126)
133 cd08692 C2B_Tac2-N C2 domain s 99.5 3.4E-14 7.5E-19 120.7 9.9 117 380-507 1-122 (135)
134 cd08389 C2A_Synaptotagmin-14_1 99.5 2.8E-14 6.2E-19 121.7 8.9 117 379-508 2-124 (124)
135 KOG0696 Serine/threonine prote 99.5 3.9E-15 8.4E-20 144.0 3.7 128 375-513 164-293 (683)
136 cd04022 C2A_MCTP_PRT_plant C2 99.5 3.7E-14 8E-19 121.8 9.4 99 418-521 17-126 (127)
137 cd04010 C2B_RasA3 C2 domain se 99.5 3.7E-14 8.1E-19 124.0 9.1 91 418-508 15-122 (148)
138 cd04050 C2B_Synaptotagmin-like 99.5 6.4E-14 1.4E-18 116.0 9.7 86 418-510 17-104 (105)
139 cd08690 C2_Freud-1 C2 domain f 99.5 1.5E-13 3.3E-18 120.2 11.8 105 418-522 21-138 (155)
140 cd04015 C2_plant_PLD C2 domain 99.5 1.8E-13 4E-18 121.6 12.2 99 418-521 54-158 (158)
141 cd04026 C2_PKC_alpha_gamma C2 99.5 9.1E-14 2E-18 120.2 9.5 123 379-514 1-127 (131)
142 cd08373 C2A_Ferlin C2 domain f 99.5 3.4E-13 7.4E-18 115.8 13.0 100 419-523 12-118 (127)
143 PF00168 C2: C2 domain; Inter 99.5 1.6E-13 3.4E-18 108.8 9.7 85 264-348 1-85 (85)
144 cd04014 C2_PKC_epsilon C2 doma 99.5 3.5E-13 7.6E-18 116.6 12.3 95 420-522 33-130 (132)
145 cd08386 C2A_Synaptotagmin-7 C2 99.5 1.2E-13 2.6E-18 118.4 9.3 118 379-508 2-125 (125)
146 cd08388 C2A_Synaptotagmin-4-11 99.5 2.7E-13 5.8E-18 116.3 11.2 118 378-507 1-127 (128)
147 cd08390 C2A_Synaptotagmin-15-1 99.5 1.6E-13 3.6E-18 117.2 9.9 117 380-508 1-123 (123)
148 cd08409 C2B_Synaptotagmin-15 C 99.5 5.6E-14 1.2E-18 122.1 5.6 121 379-510 1-126 (137)
149 cd04025 C2B_RasA1_RasA4 C2 dom 99.5 3.7E-13 8E-18 115.0 10.6 96 418-518 17-122 (123)
150 cd08404 C2B_Synaptotagmin-4 C2 99.5 8.2E-14 1.8E-18 121.2 6.1 119 379-509 1-124 (136)
151 PLN03200 cellulose synthase-in 99.4 1.6E-13 3.5E-18 158.9 9.6 101 419-523 1996-2102(2102)
152 cd04054 C2A_Rasal1_RasA4 C2 do 99.4 5.6E-13 1.2E-17 113.4 10.1 98 417-519 16-120 (121)
153 cd08405 C2B_Synaptotagmin-7 C2 99.4 1.2E-13 2.6E-18 120.2 5.6 119 379-509 1-124 (136)
154 cd08394 C2A_Munc13 C2 domain f 99.4 8.4E-13 1.8E-17 110.6 10.3 88 421-515 19-111 (127)
155 cd04033 C2_NEDD4_NEDD4L C2 dom 99.4 6.3E-13 1.4E-17 115.2 9.9 102 418-520 17-132 (133)
156 cd08402 C2B_Synaptotagmin-1 C2 99.4 1.9E-13 4E-18 119.0 6.5 124 379-514 1-129 (136)
157 cd04046 C2_Calpain C2 domain p 99.4 2.1E-12 4.6E-17 110.7 12.6 99 418-524 20-125 (126)
158 cd08410 C2B_Synaptotagmin-17 C 99.4 7E-13 1.5E-17 115.0 9.2 119 380-509 1-124 (135)
159 cd04043 C2_Munc13_fungal C2 do 99.4 1.9E-12 4.1E-17 111.1 11.1 99 419-521 19-121 (126)
160 cd04044 C2A_Tricalbin-like C2 99.4 1.8E-12 3.9E-17 110.9 10.9 99 420-522 22-124 (124)
161 cd08408 C2B_Synaptotagmin-14_1 99.4 2E-12 4.3E-17 112.2 9.9 119 380-509 2-126 (138)
162 cd00276 C2B_Synaptotagmin C2 d 99.4 3.2E-13 6.9E-18 117.3 4.8 123 380-514 1-128 (134)
163 PLN03008 Phospholipase D delta 99.4 3.2E-12 6.8E-17 136.1 12.7 101 419-524 74-180 (868)
164 cd08374 C2F_Ferlin C2 domain s 99.4 3.8E-12 8.2E-17 108.2 10.5 95 264-358 2-125 (133)
165 KOG1030 Predicted Ca2+-depende 99.4 1.6E-12 3.4E-17 112.0 7.9 74 417-496 22-96 (168)
166 cd04017 C2D_Ferlin C2 domain f 99.4 4.1E-12 8.9E-17 110.2 10.7 102 417-523 17-134 (135)
167 cd08403 C2B_Synaptotagmin-3-5- 99.4 8.4E-13 1.8E-17 114.5 6.3 118 380-509 1-123 (134)
168 cd04009 C2B_Munc13-like C2 dom 99.4 2.6E-12 5.7E-17 111.2 9.2 110 378-497 1-119 (133)
169 cd08688 C2_KIAA0528-like C2 do 99.4 2.8E-12 6E-17 107.1 9.1 85 419-508 18-109 (110)
170 cd08384 C2B_Rabphilin_Doc2 C2 99.4 7E-13 1.5E-17 114.9 5.6 91 417-509 29-122 (133)
171 cd08382 C2_Smurf-like C2 domai 99.4 3.2E-12 6.9E-17 109.0 9.4 95 418-518 17-122 (123)
172 cd04018 C2C_Ferlin C2 domain t 99.4 4.4E-12 9.6E-17 111.1 10.1 93 419-516 32-133 (151)
173 cd04048 C2A_Copine C2 domain f 99.4 2.7E-12 5.9E-17 109.0 8.5 91 418-508 17-114 (120)
174 cd08377 C2C_MCTP_PRT C2 domain 99.3 8.5E-12 1.8E-16 105.9 11.3 94 419-520 19-118 (119)
175 cd04035 C2A_Rabphilin_Doc2 C2 99.3 4.5E-12 9.8E-17 108.2 9.6 116 379-504 1-121 (123)
176 KOG1011 Neurotransmitter relea 99.3 4.1E-12 8.9E-17 128.2 9.4 120 260-388 293-423 (1283)
177 smart00239 C2 Protein kinase C 99.3 1.5E-11 3.4E-16 100.3 11.1 97 263-359 1-97 (101)
178 cd00030 C2 C2 domain. The C2 d 99.3 1.6E-11 3.5E-16 99.9 10.9 101 264-366 1-102 (102)
179 cd04011 C2B_Ferlin C2 domain s 99.3 9.7E-12 2.1E-16 104.1 9.3 85 419-508 18-110 (111)
180 cd04041 C2A_fungal C2 domain f 99.3 4.1E-12 8.8E-17 106.3 6.7 84 420-508 21-108 (111)
181 cd04027 C2B_Munc13 C2 domain s 99.3 1.3E-11 2.9E-16 105.9 9.9 93 418-518 18-127 (127)
182 cd08691 C2_NEDL1-like C2 domai 99.3 2E-11 4.2E-16 105.4 10.9 98 419-518 18-136 (137)
183 cd08675 C2B_RasGAP C2 domain s 99.3 1E-11 2.2E-16 107.8 8.6 90 419-509 16-121 (137)
184 cd04039 C2_PSD C2 domain prese 99.3 1.7E-11 3.6E-16 101.7 9.0 73 421-498 25-99 (108)
185 cd08676 C2A_Munc13-like C2 dom 99.3 1.1E-11 2.5E-16 108.7 8.2 86 417-506 44-153 (153)
186 cd04040 C2D_Tricalbin-like C2 99.3 2.1E-11 4.6E-16 102.7 9.5 87 419-509 17-104 (115)
187 KOG1028 Ca2+-dependent phospho 99.3 2.3E-11 4.9E-16 124.6 11.0 137 376-524 150-297 (421)
188 cd04051 C2_SRC2_like C2 domain 99.2 2.4E-11 5.2E-16 104.1 8.0 94 419-516 18-125 (125)
189 cd04045 C2C_Tricalbin-like C2 99.2 4.3E-11 9.3E-16 101.4 9.3 91 419-515 19-110 (120)
190 cd04049 C2_putative_Elicitor-r 99.2 7.8E-11 1.7E-15 100.7 10.6 85 420-509 20-109 (124)
191 cd08686 C2_ABR C2 domain in th 99.2 1.2E-10 2.5E-15 96.4 10.6 96 420-520 13-118 (118)
192 cd04038 C2_ArfGAP C2 domain pr 99.2 9.3E-11 2E-15 102.3 10.6 73 420-498 20-93 (145)
193 cd04021 C2_E3_ubiquitin_ligase 99.2 1.1E-10 2.3E-15 99.8 10.7 94 419-518 19-124 (125)
194 cd08383 C2A_RasGAP C2 domain ( 99.2 9.6E-11 2.1E-15 99.1 10.2 94 420-520 16-117 (117)
195 PLN02270 phospholipase D alpha 99.2 1.8E-10 4E-15 122.8 14.1 129 260-394 6-153 (808)
196 cd04013 C2_SynGAP_like C2 doma 99.2 1.4E-10 3.1E-15 100.5 10.9 96 423-523 28-141 (146)
197 PLN02223 phosphoinositide phos 99.2 4.3E-10 9.4E-15 115.4 15.2 104 261-367 408-518 (537)
198 cd04032 C2_Perforin C2 domain 99.2 2.4E-10 5.2E-15 97.2 10.3 72 420-496 46-119 (127)
199 PF10296 DUF2404: Putative int 99.1 3.3E-10 7.2E-15 90.5 9.9 85 75-159 1-89 (91)
200 PLN02952 phosphoinositide phos 99.1 8.6E-10 1.9E-14 115.7 14.9 104 261-367 469-580 (599)
201 KOG1328 Synaptic vesicle prote 99.1 1.7E-11 3.8E-16 125.4 1.7 131 259-393 111-305 (1103)
202 cd00275 C2_PLC_like C2 domain 99.1 9.7E-10 2.1E-14 94.5 11.9 99 419-520 22-127 (128)
203 cd04037 C2E_Ferlin C2 domain f 99.1 2.3E-10 5.1E-15 97.6 7.6 77 417-496 16-93 (124)
204 KOG1326 Membrane-associated pr 99.1 1.3E-10 2.9E-15 123.4 7.2 89 262-353 613-703 (1105)
205 cd04047 C2B_Copine C2 domain s 99.1 3.6E-10 7.9E-15 94.4 7.3 78 418-496 17-100 (110)
206 PLN02230 phosphoinositide phos 99.0 8.3E-09 1.8E-13 108.2 14.1 105 261-368 468-580 (598)
207 KOG1327 Copine [Signal transdu 99.0 3.3E-09 7.1E-14 108.0 10.3 217 298-528 42-278 (529)
208 KOG1011 Neurotransmitter relea 98.9 1.4E-09 3.1E-14 110.3 5.9 97 416-520 310-423 (1283)
209 PLN02222 phosphoinositide phos 98.9 1.9E-08 4.2E-13 105.3 14.5 104 261-367 451-562 (581)
210 KOG0169 Phosphoinositide-speci 98.9 9.2E-09 2E-13 107.8 12.0 121 263-389 617-744 (746)
211 cd08689 C2_fungal_Pkc1p C2 dom 98.9 5.5E-09 1.2E-13 83.3 7.7 84 264-355 1-87 (109)
212 PLN02228 Phosphoinositide phos 98.9 2.2E-08 4.8E-13 104.6 14.5 123 262-390 431-562 (567)
213 KOG1031 Predicted Ca2+-depende 98.8 2E-08 4.3E-13 101.0 10.8 122 262-391 3-138 (1169)
214 PLN02270 phospholipase D alpha 98.7 6.3E-08 1.4E-12 103.8 11.7 100 420-524 45-151 (808)
215 KOG1328 Synaptic vesicle prote 98.7 6.6E-09 1.4E-13 106.9 3.8 97 259-355 944-1048(1103)
216 PLN02223 phosphoinositide phos 98.7 9E-08 2E-12 98.6 11.3 97 421-520 434-536 (537)
217 cd08374 C2F_Ferlin C2 domain s 98.7 3.2E-08 6.9E-13 84.3 6.6 76 421-498 24-125 (133)
218 PLN02352 phospholipase D epsil 98.7 1.4E-07 3.1E-12 100.9 13.0 121 260-394 8-135 (758)
219 KOG1264 Phospholipase C [Lipid 98.7 8.7E-08 1.9E-12 100.0 10.1 125 262-393 1065-1193(1267)
220 PLN02952 phosphoinositide phos 98.7 1.4E-07 3E-12 99.3 11.4 96 422-520 497-596 (599)
221 cd00030 C2 C2 domain. The C2 d 98.7 1.2E-07 2.6E-12 76.7 8.7 82 421-506 19-102 (102)
222 KOG2059 Ras GTPase-activating 98.6 4.9E-08 1.1E-12 100.8 7.0 121 269-390 138-277 (800)
223 smart00239 C2 Protein kinase C 98.6 1.5E-07 3.2E-12 76.4 8.1 77 421-499 20-97 (101)
224 KOG1327 Copine [Signal transdu 98.6 2E-07 4.3E-12 95.2 9.8 173 174-356 41-236 (529)
225 PF00168 C2: C2 domain; Inter 98.6 4.8E-08 1E-12 76.9 3.7 67 420-488 18-85 (85)
226 KOG0905 Phosphoinositide 3-kin 98.5 6.6E-08 1.4E-12 104.5 4.4 108 260-367 1522-1634(1639)
227 PLN02228 Phosphoinositide phos 98.5 8.5E-07 1.8E-11 92.9 11.6 103 422-527 458-567 (567)
228 PLN02230 phosphoinositide phos 98.5 7.9E-07 1.7E-11 93.5 10.9 97 421-520 495-597 (598)
229 PLN02222 phosphoinositide phos 98.5 8.9E-07 1.9E-11 93.0 10.9 97 421-520 478-580 (581)
230 KOG0169 Phosphoinositide-speci 98.4 8.3E-07 1.8E-11 93.4 9.4 101 419-522 638-745 (746)
231 KOG1326 Membrane-associated pr 98.4 2E-07 4.3E-12 99.8 4.8 216 260-490 204-454 (1105)
232 KOG0905 Phosphoinositide 3-kin 98.4 3.3E-07 7.1E-12 99.3 4.6 122 376-509 1509-1636(1639)
233 KOG1264 Phospholipase C [Lipid 98.3 1.8E-06 3.8E-11 90.5 7.2 96 418-516 1081-1179(1267)
234 PLN02352 phospholipase D epsil 98.2 6E-06 1.3E-10 88.7 10.4 91 423-524 37-133 (758)
235 KOG1013 Synaptic vesicle prote 98.2 2.2E-06 4.9E-11 81.4 4.9 104 259-364 230-337 (362)
236 PLN02964 phosphatidylserine de 97.9 1.4E-05 3.1E-10 85.2 6.7 89 259-356 51-139 (644)
237 cd08683 C2_C2cd3 C2 domain fou 97.9 3.1E-05 6.8E-10 63.9 5.7 83 423-506 34-143 (143)
238 KOG3532 Predicted protein kina 97.8 0.0001 2.2E-09 76.3 10.2 227 58-293 81-358 (1051)
239 cd08689 C2_fungal_Pkc1p C2 dom 97.8 2.9E-05 6.2E-10 62.3 4.8 70 419-497 20-89 (109)
240 KOG1031 Predicted Ca2+-depende 97.8 6E-05 1.3E-09 76.5 8.1 95 420-519 23-134 (1169)
241 cd08683 C2_C2cd3 C2 domain fou 97.7 9.8E-05 2.1E-09 61.1 5.7 103 264-366 1-143 (143)
242 cd08684 C2A_Tac2-N C2 domain f 97.7 5.3E-05 1.1E-09 58.0 3.7 98 265-365 2-102 (103)
243 cd08684 C2A_Tac2-N C2 domain f 97.3 0.00017 3.8E-09 55.2 2.8 68 436-505 33-102 (103)
244 KOG2060 Rab3 effector RIM1 and 97.2 0.00026 5.7E-09 68.9 3.7 110 259-369 266-380 (405)
245 KOG3837 Uncharacterized conser 97.1 0.0005 1.1E-08 67.6 4.3 125 260-389 365-503 (523)
246 PLN02964 phosphatidylserine de 96.9 0.0014 3E-08 70.4 5.6 67 432-498 74-141 (644)
247 PF15627 CEP76-C2: CEP76 C2 do 96.8 0.024 5.3E-07 49.3 11.4 131 259-392 6-153 (156)
248 KOG2060 Rab3 effector RIM1 and 96.4 0.002 4.4E-08 62.8 2.8 88 421-509 290-380 (405)
249 PF12416 DUF3668: Cep120 prote 96.0 0.084 1.8E-06 52.5 11.8 119 264-390 2-133 (340)
250 KOG3837 Uncharacterized conser 95.9 0.017 3.8E-07 57.1 6.3 100 422-521 388-503 (523)
251 KOG1265 Phospholipase C [Lipid 95.7 0.033 7.1E-07 60.2 7.7 92 260-359 701-799 (1189)
252 PF10358 NT-C2: N-terminal C2 95.5 0.93 2E-05 39.3 15.3 122 261-392 6-138 (143)
253 PF15627 CEP76-C2: CEP76 C2 do 95.1 0.2 4.4E-06 43.7 9.5 92 432-523 39-152 (156)
254 cd08398 C2_PI3K_class_I_alpha 94.9 0.73 1.6E-05 40.7 12.6 88 262-353 8-105 (158)
255 PF00792 PI3K_C2: Phosphoinosi 94.2 0.26 5.6E-06 42.9 8.2 56 439-494 21-85 (142)
256 cd08693 C2_PI3K_class_I_beta_d 94.2 0.36 7.8E-06 43.4 9.3 90 262-353 8-119 (173)
257 KOG1452 Predicted Rho GTPase-a 94.2 0.13 2.8E-06 49.2 6.5 117 259-389 48-167 (442)
258 PF10358 NT-C2: N-terminal C2 93.8 1.2 2.5E-05 38.6 11.6 103 424-526 24-140 (143)
259 cd08687 C2_PKN-like C2 domain 93.8 0.94 2E-05 35.4 9.3 85 282-388 8-92 (98)
260 cd08380 C2_PI3K_like C2 domain 93.7 0.58 1.2E-05 41.4 9.5 90 263-353 9-106 (156)
261 cd08397 C2_PI3K_class_III C2 d 93.4 0.3 6.6E-06 43.2 7.3 55 440-494 49-107 (159)
262 PF12416 DUF3668: Cep120 prote 92.8 0.63 1.4E-05 46.4 9.1 92 431-522 22-133 (340)
263 cd08397 C2_PI3K_class_III C2 d 92.2 0.68 1.5E-05 41.0 7.7 73 281-353 28-106 (159)
264 cd04012 C2A_PI3K_class_II C2 d 91.4 0.74 1.6E-05 41.4 7.2 92 262-353 8-118 (171)
265 cd08380 C2_PI3K_like C2 domain 90.9 0.63 1.4E-05 41.1 6.2 55 440-494 47-107 (156)
266 cd08695 C2_Dock-B C2 domains f 89.6 3.9 8.4E-05 37.2 10.0 55 298-352 54-112 (189)
267 cd08399 C2_PI3K_class_I_gamma 88.4 2.9 6.2E-05 37.7 8.4 72 263-336 11-88 (178)
268 cd08694 C2_Dock-A C2 domains f 88.1 5.9 0.00013 36.1 10.1 55 298-352 54-114 (196)
269 cd08398 C2_PI3K_class_I_alpha 88.0 1.4 3.1E-05 38.9 6.1 53 441-494 46-106 (158)
270 PF14429 DOCK-C2: C2 domain in 87.6 2.8 6.1E-05 38.1 8.1 57 297-353 59-120 (184)
271 cd08399 C2_PI3K_class_I_gamma 87.2 1.7 3.6E-05 39.2 6.1 55 440-494 48-122 (178)
272 PF14429 DOCK-C2: C2 domain in 85.7 2.8 6.1E-05 38.1 7.0 56 438-493 59-120 (184)
273 cd08693 C2_PI3K_class_I_beta_d 85.3 2.3 5E-05 38.3 6.1 55 440-494 46-120 (173)
274 KOG1329 Phospholipase D1 [Lipi 84.4 2.7 5.8E-05 46.5 7.1 106 283-393 138-244 (887)
275 PF15625 CC2D2AN-C2: CC2D2A N- 84.4 18 0.00038 32.4 11.4 70 282-355 36-107 (168)
276 PF15625 CC2D2AN-C2: CC2D2A N- 83.8 16 0.00035 32.6 10.9 88 435-523 46-163 (168)
277 PF00792 PI3K_C2: Phosphoinosi 83.8 7.9 0.00017 33.5 8.7 55 300-354 23-85 (142)
278 cd08695 C2_Dock-B C2 domains f 80.9 4.4 9.6E-05 36.8 6.1 56 438-493 53-113 (189)
279 smart00142 PI3K_C2 Phosphoinos 80.0 9.4 0.0002 30.8 7.2 74 264-337 13-92 (100)
280 cd08679 C2_DOCK180_related C2 79.4 20 0.00044 32.3 10.0 54 299-353 55-115 (178)
281 PF11618 DUF3250: Protein of u 77.0 16 0.00034 29.9 7.7 87 296-389 10-105 (107)
282 cd08687 C2_PKN-like C2 domain 75.9 13 0.00029 29.3 6.4 70 440-520 23-92 (98)
283 cd08694 C2_Dock-A C2 domains f 75.8 8.6 0.00019 35.0 6.3 55 438-492 53-114 (196)
284 cd08697 C2_Dock-D C2 domains f 75.2 28 0.00061 31.6 9.5 55 298-352 57-122 (185)
285 KOG1265 Phospholipase C [Lipid 72.3 2.7 5.8E-05 46.2 2.5 58 437-497 737-797 (1189)
286 cd08696 C2_Dock-C C2 domains f 71.9 10 0.00022 34.2 5.9 56 297-352 54-117 (179)
287 smart00142 PI3K_C2 Phosphoinos 71.4 7.7 0.00017 31.3 4.6 39 440-478 51-92 (100)
288 KOG1329 Phospholipase D1 [Lipi 71.0 5.7 0.00012 44.0 4.7 97 422-523 138-242 (887)
289 cd04012 C2A_PI3K_class_II C2 d 70.5 9.1 0.0002 34.3 5.3 46 449-494 61-119 (171)
290 KOG2238 Uncharacterized conser 67.4 1.8 3.9E-05 47.0 0.0 89 69-157 334-426 (795)
291 PF01102 Glycophorin_A: Glycop 67.3 1.1 2.5E-05 37.4 -1.1 29 4-32 66-94 (122)
292 cd08696 C2_Dock-C C2 domains f 64.9 21 0.00046 32.2 6.4 56 438-493 54-118 (179)
293 cd08679 C2_DOCK180_related C2 63.6 19 0.0004 32.5 5.9 54 439-493 54-115 (178)
294 PF11618 DUF3250: Protein of u 59.7 46 0.001 27.2 6.9 81 437-519 10-103 (107)
295 PTZ00447 apical membrane antig 58.5 1.1E+02 0.0025 30.3 10.3 114 259-388 55-172 (508)
296 KOG0694 Serine/threonine prote 56.6 3.1 6.8E-05 44.7 -0.5 94 282-389 27-121 (694)
297 PF12732 YtxH: YtxH-like prote 55.9 8.3 0.00018 29.1 1.9 20 3-22 1-20 (74)
298 cd08697 C2_Dock-D C2 domains f 52.7 46 0.00099 30.2 6.4 56 438-493 56-123 (185)
299 PF06295 DUF1043: Protein of u 50.9 9.6 0.00021 32.4 1.7 19 4-22 3-21 (128)
300 PF15179 Myc_target_1: Myc tar 47.8 3.1 6.7E-05 36.8 -1.8 25 1-25 23-47 (197)
301 PF01034 Syndecan: Syndecan do 42.7 8.3 0.00018 28.0 0.0 22 2-23 13-34 (64)
302 PTZ00447 apical membrane antig 42.0 1.6E+02 0.0035 29.2 8.5 87 431-518 78-170 (508)
303 PF04478 Mid2: Mid2 like cell 41.5 12 0.00026 32.4 0.9 21 2-22 53-73 (154)
304 KOG4092 Mitochondrial F1F0-ATP 41.2 15 0.00033 28.8 1.2 35 56-90 36-70 (108)
305 KOG4269 Rac GTPase-activating 41.0 17 0.00036 40.4 2.0 87 259-352 756-854 (1112)
306 KOG4027 Uncharacterized conser 40.2 1.6E+02 0.0035 25.8 7.3 47 306-352 59-109 (187)
307 PF07162 B9-C2: Ciliary basal 39.3 2.8E+02 0.006 24.6 11.3 81 266-352 6-102 (168)
308 PF14851 FAM176: FAM176 family 36.2 14 0.0003 32.3 0.4 22 3-24 26-47 (153)
309 PF12732 YtxH: YtxH-like prote 33.5 22 0.00048 26.8 1.1 18 2-19 4-21 (74)
310 PF14356 DUF4403: Domain of un 33.4 5.5E+02 0.012 26.7 11.8 87 119-242 280-367 (427)
311 PRK11677 hypothetical protein; 32.2 32 0.00069 29.4 1.9 16 4-19 7-22 (134)
312 PF06219 DUF1005: Protein of u 31.5 1.4E+02 0.0031 30.5 6.5 60 467-526 95-172 (460)
313 cd05137 RasGAP_CLA2_BUD2 CLA2/ 30.8 69 0.0015 33.0 4.5 43 343-389 1-44 (395)
314 PF01102 Glycophorin_A: Glycop 28.5 10 0.00022 31.7 -1.6 29 2-30 68-96 (122)
315 PF15102 TMEM154: TMEM154 prot 27.5 26 0.00057 30.2 0.7 7 71-77 131-137 (146)
316 COG4980 GvpP Gas vesicle prote 24.9 1.2E+02 0.0025 25.2 3.9 22 1-22 5-26 (115)
317 KOG0694 Serine/threonine prote 20.8 39 0.00085 36.7 0.6 74 441-518 43-118 (694)
318 PF06219 DUF1005: Protein of u 20.8 6E+02 0.013 26.2 8.7 64 326-390 95-168 (460)
319 PF04971 Lysis_S: Lysis protei 20.1 44 0.00095 24.7 0.5 15 5-19 36-50 (68)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=1.9e-57 Score=480.57 Aligned_cols=444 Identities=25% Similarity=0.407 Sum_probs=362.2
Q ss_pred CCCcchHHHHHHHHHHchhhHHHHHHHHHHhHHHHHhhcCCCccceEEEEEEecCCCCCeEeeEEEEec-CCCeEEEEEE
Q 009664 66 SHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELE 144 (529)
Q Consensus 66 ~~~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~~~~~l~~~~p~~i~~~~~~~~~lG~~~P~i~~i~~~~~-~~~~~~ld~~ 144 (529)
.|+|++||||++|+++||.+++.+++.|.+++|+.|+++.|+||+++.+.+||||++||||.+||.|+. +++.+.||++
T Consensus 218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 589999999999999999999999999999999999999999999999999999999999999999988 7799999999
Q ss_pred EEEec---------------CceEEEEEEe--eec-ceeeEEEEEEEEEEEEEEEEecCCCCCCcceeEEEEeccceeee
Q 009664 145 MQWDA---------------NSSIILAIKT--RLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLD 206 (529)
Q Consensus 145 ~~~~~---------------~~~i~l~~~~--~~g-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~v~~~f~~~p~l~ 206 (529)
+++.. ++.|.|.++. .+| .++||.|+++.|.|++|++++ |++.+|++..++++|++.|.+|
T Consensus 298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~d 376 (1227)
T COG5038 298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFD 376 (1227)
T ss_pred eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCccee
Confidence 99962 3557777754 345 789999999999999999999 9999999999999999999999
Q ss_pred EEEEEcc-----cccccCCcchHHHHHHHHHHHhhhcccccccccCCCCCCccccccCcceEEEEEEEEecCCCccC--C
Q 009664 207 FKLKVVG-----GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKD--L 279 (529)
Q Consensus 207 f~l~~~g-----~~~~~~P~l~~~~~~~i~~~i~~~~~~P~~~~ipl~~~~~~~~~~~~~g~L~V~v~~a~~L~~~d--~ 279 (529)
|.++++| .||+++|||+.|++++|...++.|+++|+.+++++..-. ......+.|+|.|+|.+|++|...+ .
T Consensus 377 f~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m-~~~s~~aIGVv~vkI~sa~~lk~~d~~i 455 (1227)
T COG5038 377 FILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIM-AGDSGTAIGVVEVKIKSAEGLKKSDSTI 455 (1227)
T ss_pred EEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhh-ccccCCeeEEEEEEEeeccCcccccccc
Confidence 9999987 378999999999999999999999999999999764311 1114478999999999999999988 6
Q ss_pred CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCce
Q 009664 280 IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359 (529)
Q Consensus 280 ~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~ 359 (529)
.+..|||+.+... +....||++.+++.||+|||+|++.+... ++.|.++|||.+....|+.+|++.++|..|...+.
T Consensus 456 ~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~ 532 (1227)
T COG5038 456 NGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPV 532 (1227)
T ss_pred cCCCCceEEEEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccc
Confidence 7899999999965 23356999999999999999999999765 56999999999989999999999999999876555
Q ss_pred ee-EEEEcccccccccCCccccEEEEEEEEEEcccCCCCCCCCC---CCCcch----hhhhhhhcCCcccCCCceEEEEE
Q 009664 360 KD-VWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFA---PNFSMT----SLEKVLTNGEKALKSGANGTEAI 431 (529)
Q Consensus 360 ~~-~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~~~~l~v~~~ 431 (529)
.. +-+.+ ..+.+..|+|+..+.|+|..+......... ++.... .+++....+......++.... +
T Consensus 533 ~~ne~~e~------~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~-l 605 (1227)
T COG5038 533 KKNELYEF------LRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAE-L 605 (1227)
T ss_pred cccceeee------eccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeEE-E
Confidence 43 24444 336788899999999999876543322211 111100 001100000011111221111 1
Q ss_pred EEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc-eeeeEEEcCCCC
Q 009664 432 ELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG-EYTDCFELDGTK 510 (529)
Q Consensus 432 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~-~~~~w~~L~~~~ 510 (529)
.. ..+..+.|+..+.+.+|.||+.++-.+.+.....+.+.++|.. ..+.+|+...+|.++.... .-..||++. ++
T Consensus 606 ~~-~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~ 681 (1227)
T COG5038 606 YT-NAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKVIATEGSTLPDLIDRTLDTFLVFPLR-NP 681 (1227)
T ss_pred Ee-cceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCceeccccccchHhhhccccceEEEEcC-CC
Confidence 11 3455677888999999999999999999988999999999987 2478999999999988765 458999999 66
Q ss_pred ccEEEEEEEEEeCCC
Q 009664 511 SGKLKLHLKWMPQPI 525 (529)
Q Consensus 511 ~G~i~l~~~~~~~~~ 525 (529)
+|+|.+...|+|++.
T Consensus 682 kg~I~~t~~W~Pi~~ 696 (1227)
T COG5038 682 KGRIFITNYWKPIYN 696 (1227)
T ss_pred cceEEEEeccceeec
Confidence 899999999999865
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-29 Score=257.94 Aligned_cols=225 Identities=28% Similarity=0.431 Sum_probs=189.1
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD 334 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v~d 334 (529)
|......|.|+|++|++|+.+|..|.+||||++++.|+...+.+|++.++++||.|||+|.|.+.. ...+.|.+.|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 456778999999999999999977889999999999988889999999999999999999999643 356799999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--h
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--K 412 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~ 412 (529)
+|+++++++||++.++|..+........|.++.+.... .....|+|.++++|.|... .+.+..++ .
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~--~~~~~gel~~sL~Y~p~~g----------~ltv~v~kar~ 309 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD--SEELAGELLLSLCYLPTAG----------RLTVVVIKARN 309 (421)
T ss_pred cCCcccccEEEEEEecCccccccccceeeeccccccCC--cccccceEEEEEEeecCCC----------eEEEEEEEecC
Confidence 99999999999999999998777778899999875432 2222389999999998753 33333332 2
Q ss_pred hhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEee--cCCCCEEEEEEEECCCCCC-CeeEEEEE
Q 009664 413 VLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGK-DYMGRCIL 489 (529)
Q Consensus 413 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i 489 (529)
+...+..+..++|++++++.......++||.+++++.||+|||+|.|.|+ ...+..|.|+|||++.++. ++||.+.+
T Consensus 310 L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~l 389 (421)
T KOG1028|consen 310 LKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCIL 389 (421)
T ss_pred CCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEe
Confidence 33456667788999999988887778899999999999999999999887 3356689999999999987 89999999
Q ss_pred eccc
Q 009664 490 TLTR 493 (529)
Q Consensus 490 ~L~~ 493 (529)
....
T Consensus 390 G~~~ 393 (421)
T KOG1028|consen 390 GSDS 393 (421)
T ss_pred cCCC
Confidence 8885
No 3
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.90 E-value=2.5e-23 Score=210.92 Aligned_cols=250 Identities=19% Similarity=0.289 Sum_probs=197.6
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
...|.|+|.+|+||+..+..|.+||||.+.+. +....||.++.+++.|.|.|.|+|.+...- +.|.|.|||.| +++
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~ 79 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKR 79 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCcce-eeEEEEEeccc-ccc
Confidence 35789999999999999999999999999997 456899999999999999999999996544 58999999999 899
Q ss_pred CceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhhh-hcCCc
Q 009664 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVL-TNGEK 419 (529)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 419 (529)
|+.||.+.+.=.+|...+..+.|+.|++- +.+....|+|++++.+.+..... ...+..+.... ..-.+
T Consensus 80 D~~IGKvai~re~l~~~~~~d~W~~L~~V---D~dsEVQG~v~l~l~~~e~~~~~--------~~~c~~L~~r~~~P~~~ 148 (800)
T KOG2059|consen 80 DDIIGKVAIKREDLHMYPGKDTWFSLQPV---DPDSEVQGKVHLELALTEAIQSS--------GLVCHVLKTRQGLPIIN 148 (800)
T ss_pred ccccceeeeeHHHHhhCCCCccceecccc---CCChhhceeEEEEEEeccccCCC--------cchhhhhhhcccCceeC
Confidence 99999999999999888889999999753 44678899999999998754321 11233332221 11234
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---------------CCCEEEEEEEEC-CCCC-CC
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---------------LHDMLIAEVWDH-DTFG-KD 482 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------------~~~~L~i~V~D~-~~~~-~d 482 (529)
+.+++|++|+...... .+.++|+++++|.||.|||.|.|.+... ..-.|.+++||. +... ++
T Consensus 149 ~~~dp~~~v~~~g~~~-~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 149 GQCDPFARVTLCGPSK-LKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCcceEEeecccch-hhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 5688999988654433 2347999999999999999999988533 234688889984 4444 48
Q ss_pred eeEEEEEecccccccceeeeEEEcCC----------CCccEEEEEEEEEeCCCC
Q 009664 483 YMGRCILTLTRVILEGEYTDCFELDG----------TKSGKLKLHLKWMPQPIY 526 (529)
Q Consensus 483 ~lG~~~i~L~~l~~~~~~~~w~~L~~----------~~~G~i~l~~~~~~~~~~ 526 (529)
++|++.+++...........||-|.. +.-|.+++.+.++-...|
T Consensus 228 FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vl 281 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVL 281 (800)
T ss_pred hceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceec
Confidence 99999999999887777799999953 245789999998865443
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=1e-22 Score=171.47 Aligned_cols=119 Identities=24% Similarity=0.454 Sum_probs=103.7
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCC-CCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
.|.|+|+|++|++++..+ .|++||||++.++ +++++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998777 7999999999997 67789999865 89999999999999764 358999999999999
Q ss_pred CCceeEEEEEECc-ccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 340 SSELIGCAQVRLC-ELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 340 ~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
+|++||++.+++. .+..+...+.|++|.+. ......|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~----~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK----QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc----cCCCCceEEEEEEeC
Confidence 9999999999996 57788878999999752 234577999999987
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.86 E-value=3.4e-21 Score=165.45 Aligned_cols=119 Identities=21% Similarity=0.477 Sum_probs=103.0
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec-----CCCCEEEEEEEECCCC
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-----ESTQHLVVRIYDDEGI 338 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~-----~~~~~l~i~v~d~~~~ 338 (529)
++|+|++|+||+.++..|.+||||+++++ +++++|+++++++||+|||+|.|.+.. ...+.|.+.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999997 667899999999999999999999876 3567899999999998
Q ss_pred CCCceeEEEEEECcccC--CCceeeEEEEcccccccccCCccccEEEEEEE
Q 009664 339 QSSELIGCAQVRLCELE--PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELL 387 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~ 387 (529)
++|++||++.++|+++. .+.....|++|.... ....+.+|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~--~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP--GKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC--CCCccccceEEEEeC
Confidence 89999999999999987 566778999997432 123567899999863
No 6
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.85 E-value=6.6e-21 Score=161.82 Aligned_cols=117 Identities=35% Similarity=0.567 Sum_probs=103.0
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccC-CCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
|.|+|+|++|++|+..+..+.+||||+++++ ++.++|+++. ++.||.|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999989999999999997 4677888875 5799999999999998766678999999999875
Q ss_pred CceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
|++||++.+++.++..+...+.|++|.. +++.+|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEEEEC
Confidence 8999999999999877667789999964 34688999999986
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.85 E-value=1.8e-20 Score=159.79 Aligned_cols=121 Identities=33% Similarity=0.527 Sum_probs=107.0
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|+|+|++|++|+..|..|.+||||+++++ +...++|++++++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 378999999999999988999999999986 23578999999999999999999998765 468999999999998999
Q ss_pred eeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
+||++.+++.++..+...+.|++|... ...+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP----NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC----CCccCceEEEEEEEECC
Confidence 999999999999988889999999642 22467899999999865
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=3.6e-20 Score=157.06 Aligned_cols=116 Identities=30% Similarity=0.446 Sum_probs=100.8
Q ss_pred EEEEEEEEecC---CCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 263 TLEVKLVQAKG---LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 263 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
.|+|+|++|++ |..+|..|.+||||++.++ +++.||+++++++||+|||+|.|.+.+.. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 38999999999 8889999999999999997 67889999999999999999999997754 48999999998863
Q ss_pred ------CCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEE
Q 009664 340 ------SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHL 384 (529)
Q Consensus 340 ------~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l 384 (529)
+|++||++.+++.++..+...+.|++|.... ....+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence 8999999999999999999999999997432 123556788865
No 9
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.84 E-value=5.1e-20 Score=159.48 Aligned_cols=119 Identities=25% Similarity=0.464 Sum_probs=103.3
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
.+.|.|+|+|++|++|++.|..|.+||||+++++ .+.++|++++++.||.|||+|.|.+.+...+.|.++|||++.+
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 5789999999999999999989999999999996 6679999999999999999999999877677999999999998
Q ss_pred CCCceeEEEEEECcccCC-----CceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 339 QSSELIGCAQVRLCELEP-----GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
++|++||++.+++.++.. ......|..+ ..+.+|+|++++.+
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEEEEe
Confidence 899999999999999864 2222344444 46778999999876
No 10
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.84 E-value=4.5e-20 Score=156.18 Aligned_cols=115 Identities=29% Similarity=0.445 Sum_probs=104.3
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
+++|+|++|++|+..+..|.+||||+++++ ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999996 56789999999999999999999998776679999999999988999
Q ss_pred eeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
+||++.++++++..+...+.|++|.+ ..|+|++.+.|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED---------GEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEEEEec
Confidence 99999999999988888999999953 259999998874
No 11
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.84 E-value=3.2e-20 Score=155.95 Aligned_cols=109 Identities=22% Similarity=0.370 Sum_probs=93.6
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEec----CCCCeEeccccCCCCCCeeccEEEEEEec---CCCCEEEEEEEEC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP----LPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD 335 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~l~i~v~d~ 335 (529)
.|+|+|++|++|+..+ .|.+||||++++.. ...++++|+++++|+||+|||+|.|.+.. +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999888 49999999999842 22346789999999999999999999974 3345799999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEccccccc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV 372 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~ 372 (529)
+..++|++||++.+++.++..+.....|++|.+...+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~ 116 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM 116 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence 9878899999999999999988889999999876543
No 12
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.84 E-value=4.4e-20 Score=156.90 Aligned_cols=116 Identities=27% Similarity=0.537 Sum_probs=103.0
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|+|+|++|++|++.+..+.+||||++++.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975445678999999999999999999998766566899999999988 8999
Q ss_pred eEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
||++.++++++..+.....|++|.+ +.+|++++++..
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~--------~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNP--------QGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCC--------CCCceEEEEEEe
Confidence 9999999999999999999999952 457998888765
No 13
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=5.2e-20 Score=161.83 Aligned_cols=126 Identities=21% Similarity=0.388 Sum_probs=106.8
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCC-CCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d 341 (529)
.|+|+|++|++|+.++..|.+||||+++++ ++..+|+++.+ ++||+|||+|.|.+.++..+.+.|+|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 389999999999999999999999999997 57889998866 69999999999999876667899999999988889
Q ss_pred ceeEEEEEECcccCCC----ceeeEEEEccccccc---ccCCccccEEEEEEEEEEc
Q 009664 342 ELIGCAQVRLCELEPG----KVKDVWLKLVKDLDV---QRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~---~~~~~~~G~i~l~l~~~p~ 391 (529)
++||++.++|+++..+ ...+.|++|.+.... .+..+.+|+|+|.+.|.+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999999998643 446899999865321 1234678999999999753
No 14
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.83 E-value=2.2e-20 Score=154.55 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=93.1
Q ss_pred ccccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecC-CCCeEeccccCCCCCCeeccEEEEEEec--CCCCEEEEE
Q 009664 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVR 331 (529)
Q Consensus 255 ~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~ 331 (529)
..+....|.|+|+|++|++|+ . .|.+||||++++.+. +..+++|+++++|+||+|||+|.|.+.. .....|.|.
T Consensus 7 L~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 7 LSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred EEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 345577899999999999998 3 467999999999853 3357899999999999999999999864 346689999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCCceeeEEEEc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
|||+|+++++++||++.++++++..+...++|..|
T Consensus 84 V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999999999999988777777788653
No 15
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=5.1e-20 Score=158.36 Aligned_cols=121 Identities=29% Similarity=0.412 Sum_probs=104.3
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC---CCEEEEEEEECCCCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES---TQHLVVRIYDDEGIQ 339 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~---~~~l~i~v~d~~~~~ 339 (529)
.|+|+|++|++|+..+..|.+||||+++++ ++.++|+++.++.||.|||.|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999997 56789999999999999999999987542 358999999999876
Q ss_pred -CCceeEEEEEECcccC-CCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 340 -SSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 340 -~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
.+++||++.++++++. .+.....|++|.+.. ..++.+|+|+|++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEEEEEc
Confidence 8999999999999987 567788999997542 1345789999998874
No 16
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.83 E-value=7.9e-20 Score=157.62 Aligned_cols=123 Identities=33% Similarity=0.539 Sum_probs=105.9
Q ss_pred eEEEEEEEEecCCCccCC--CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
|+|+|+|++|++|+..+. .+.+||||+++++ .+.++|++++++.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 8899999999986 56789999999999999999999998766679999999999988
Q ss_pred CCceeEEEEEECcccC---CCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 340 SSELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
++++||++.+++.++. .......|+.|.+... ......+|+|++++.|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc-CccccccceEEEEEEC
Confidence 9999999999999986 3344679999975422 1335578999999875
No 17
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.82 E-value=1.7e-19 Score=153.24 Aligned_cols=119 Identities=29% Similarity=0.450 Sum_probs=101.9
Q ss_pred EEEEEEEecCCCccC-CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 264 LEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 264 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
|.|+|++|+||+..+ ..|.+||||+++++ ....++|+++++|+||.|||+|.|.+.+. ...|.|.|||++.+++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 789999999999874 45789999999995 33468999999999999999999999754 368999999999999999
Q ss_pred eeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
+||++.++++++..+...+.|++|++.. ..++.+|+|++++.+
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~---~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD---ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC---CCCcccEEEEEEEEC
Confidence 9999999999998877889999997642 234568999998764
No 18
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.82 E-value=9.9e-20 Score=154.86 Aligned_cols=105 Identities=27% Similarity=0.462 Sum_probs=94.1
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEE-e--cCCCCEEEEEEEEC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRIYDD 335 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v-~--~~~~~~l~i~v~d~ 335 (529)
.|.|.|+|++|++|+.++ .+.+||||++++.+... .+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 689999999999999999 89999999999986543 468999999999999999999987 2 33556899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
+.++++++||++.++|.++..+...+.|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999888778899987
No 19
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.82 E-value=2.8e-19 Score=153.51 Aligned_cols=122 Identities=30% Similarity=0.475 Sum_probs=104.6
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|.|+|++|++|+. ..|.+||||++++. ...+.++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMD-EPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEEC-CCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 67899999999986 22456899999999999999999999854 35689999999999889999
Q ss_pred eEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
||++.++++++..+.....|++|.+... .+.+.+|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEecc
Confidence 9999999999988888889999975421 235679999999999854
No 20
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.82 E-value=1.4e-19 Score=154.73 Aligned_cols=121 Identities=24% Similarity=0.486 Sum_probs=105.5
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|+|+|++|++|..++..+.+||||+++++ +...+|++++++.||.|||+|.|.+.+...+.|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 489999999999999988899999999986 56789999999999999999999998766678999999999988999
Q ss_pred eeEEEEEECcccCCCceeeEEEEccccccc-ccCCccccEEEEEE
Q 009664 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDV-QRDTKYRGQVHLEL 386 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~-~~~~~~~G~i~l~l 386 (529)
+||++.+++.++..+...+.|+.|.+.... ...++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999877777899999865422 23567789999875
No 21
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.82 E-value=3.4e-19 Score=152.68 Aligned_cols=122 Identities=21% Similarity=0.368 Sum_probs=102.3
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
...|+|+|++|++|+.. +.+||||+++++ +.+..+|++. ++.||.|||+|.|.+.....+.+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 478999999996 2345788874 68999999999998765544689999999999999
Q ss_pred CceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
|++||++.++|.++..+...+.|++|.+.. ....+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~--~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS--PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC--CCCCCcCcEEEEEEEEEc
Confidence 999999999999998888889999998642 123567799999999985
No 22
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.82 E-value=2.2e-19 Score=155.87 Aligned_cols=110 Identities=25% Similarity=0.430 Sum_probs=96.7
Q ss_pred cceEEEEEEEEecCCCccC-CCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEE-EC
Q 009664 260 PVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DD 335 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~-d~ 335 (529)
..|.|.|+|++|+||+.++ ..|.+||||++++.+.+. .++||+++++++||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3689999999999999864 568899999999986554 3789999999999999999999998 56779999999 57
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEccccc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL 370 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 370 (529)
+.++++++||++.++|+++..+.....|++|.+..
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 88888999999999999998777788999998654
No 23
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.82 E-value=2.2e-19 Score=153.24 Aligned_cols=115 Identities=35% Similarity=0.634 Sum_probs=101.9
Q ss_pred eEEEEEEEEecCCCccCC------CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 009664 262 GTLEVKLVQAKGLTNKDL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~ 335 (529)
|+|+|+|++|++|+..+. .|.+||||+++++ ++.++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998874 3689999999997 5789999999999999999999999876678999999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
+.. ++++||++.+++.++..+...+.|++|.. ...|+|++++.|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~--------~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED--------VKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECcC--------CCCceEEEEEeC
Confidence 987 89999999999999987777889999952 367999998865
No 24
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.81 E-value=2e-19 Score=153.89 Aligned_cols=110 Identities=23% Similarity=0.428 Sum_probs=96.7
Q ss_pred cCcceEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v 332 (529)
....+.|.|+|++|+||+.++.. |.+||||++++.+... .+++|+++++++||.|||+|.|.+.. .....|.++|
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 45678999999999999999875 8999999999986553 45799999999999999999999864 3456899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
||++..+++++||++.++|.++..+.....|++|+
T Consensus 91 ~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999999999999999998777788999873
No 25
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=3e-19 Score=151.62 Aligned_cols=114 Identities=23% Similarity=0.445 Sum_probs=98.4
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|.|+|++|++|+.+ .+||||+++++ ++..+|++++++.||+|||+|.|.+.+...+.|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 378999999999877 78999999997 5678999999999999999999998776677999999999976 789
Q ss_pred eeEEEEEECcccCCC-----ceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 343 LIGCAQVRLCELEPG-----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
+||++.++++++... .....|++|.+.. ..+.+|+|++++.|
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~ 119 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF 119 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence 999999999998542 2356899997642 35788999999987
No 26
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=155.89 Aligned_cols=97 Identities=34% Similarity=0.608 Sum_probs=89.9
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
...|.|+|+|++|.+|..+|..+++||||++.++ +++.||+++++++||+|||.|.|.+.++. ..|.+.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDPN-TPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCCC-ceEEEEEEeCCCC
Confidence 4679999999999999999988999999999998 88899999999999999999999999985 5999999999999
Q ss_pred CCCceeEEEEEECcccCCCce
Q 009664 339 QSSELIGCAQVRLCELEPGKV 359 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~ 359 (529)
++||+||.++|+|..+.....
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred CcccccceeeeccHHHHHHhh
Confidence 999999999999998865443
No 27
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.80 E-value=3.6e-19 Score=152.48 Aligned_cols=111 Identities=34% Similarity=0.546 Sum_probs=99.4
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d 334 (529)
+.+..|.|.|+|++|++|+.++..|.+||||++++.+.+.+.++|++++++.||.|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 3456799999999999999999889999999999986666789999999999999999999998643 35689999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
++.++++++||++.++++++..+...+.|++|+
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999889999999999999998777889999984
No 28
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.80 E-value=3.9e-19 Score=151.87 Aligned_cols=111 Identities=18% Similarity=0.323 Sum_probs=97.1
Q ss_pred ccCcceEEEEEEEEecCCCccCC-CCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 331 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~ 331 (529)
+....|.|.|+|++|+||+..+. .|.+||||++++.+.+. .++||++++++.||.|||+|.|.+... ....|.|.
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 34678999999999999998875 47899999999986553 467999999999999999999998642 35689999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|||++..+++++||++.++|.++......+.|++|+
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999999999999999999998888899999983
No 29
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.80 E-value=1.1e-18 Score=155.12 Aligned_cols=123 Identities=27% Similarity=0.485 Sum_probs=103.5
Q ss_pred ceEEEEEEEEecCCCccC------------------------------CCCCCCcEEEEEEecCCCCeEeccccCCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKD------------------------------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNP 310 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP 310 (529)
.|+|+|+|.+|++|+++| ..|.+||||+++++ +.+..+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCCC
Confidence 599999999999999987 24678999999997 2345799999999999
Q ss_pred eeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 311 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 311 ~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
+|||+|.|.+.+. .+.|.|.|||++..+ +++||++.++++++..+...+.|++|.... .+..+..|+|+++++|.
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~--~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN--GKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC--CCCCCCCCEEEEEEEEC
Confidence 9999999998665 468999999999874 689999999999998888889999997542 12334568999999983
No 30
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=6.8e-19 Score=150.89 Aligned_cols=122 Identities=28% Similarity=0.505 Sum_probs=102.4
Q ss_pred ceEEEEEEEEecCCCccC-CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
.|.|+|+|++|++|+..+ ..+.+||||++++... .+.++|+++.++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999755 4467999999999732 36789999999999999999999987 44679999999999988
Q ss_pred CCceeEEEEEECcccCCCceee-EEEEcccccccccCCccccEEEEEEEEEE
Q 009664 340 SSELIGCAQVRLCELEPGKVKD-VWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
+|++||++.+++.++..+...+ .+..+. .+++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh------cCCccceEEEEEEEeCC
Confidence 9999999999999998766654 344442 25678899999999986
No 31
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.79 E-value=2.4e-18 Score=146.28 Aligned_cols=118 Identities=33% Similarity=0.584 Sum_probs=102.1
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d 341 (529)
|.|+|+|++|++|+..+..+.+||||++++. +...+|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999986 5567999999999999999999998664 46899999999988899
Q ss_pred ceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
++||++.+++.++..+. ..|+.|.... ...+..|+|++++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~~---~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGE--RKWYALKDKK---LRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCC--ceEEECcccC---CCCceeeEEEEEEEe
Confidence 99999999999987654 5799986432 244578999999876
No 32
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.79 E-value=1.1e-18 Score=149.45 Aligned_cols=110 Identities=32% Similarity=0.518 Sum_probs=98.6
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD 335 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~ 335 (529)
....|.|+|+|++|++|+.++..|.+||||++++.+...+.++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 356789999999999999999889999999999987666788999999999999999999998642 346899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
+.++++++||++.++++++..+...+.|++|.
T Consensus 92 d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99989999999999999998888889999984
No 33
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=1.7e-18 Score=150.30 Aligned_cols=123 Identities=27% Similarity=0.462 Sum_probs=102.8
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCC----CCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
.|+|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+... .+.|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 389999999999999988999999999997431 1257899999999999999999998654 45899999999999
Q ss_pred CCCceeEEEEEECcccCCCc------eeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 339 QSSELIGCAQVRLCELEPGK------VKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
+++++||++.+++.++..+. ....|++|.+.. ..++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~---~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRS---SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecC---CCCcceeEEEEEEeeC
Confidence 89999999999999986543 246899997532 2456799999999883
No 34
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.79 E-value=3.6e-18 Score=146.47 Aligned_cols=123 Identities=17% Similarity=0.282 Sum_probs=103.5
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
|.++|+|+|++|++|...+..|.+||||++.++ ++.++|++++++.||+|||.|.|.+.+. .+.|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999986 6678999999999999999999988765 56899999999876
Q ss_pred CCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 340 SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
.|++||++.+++.++.. ....|++|.+... ..+++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEEEEEcc
Confidence 58999999999987643 3446777764332 346788999999998764
No 35
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.79 E-value=8.7e-19 Score=148.59 Aligned_cols=111 Identities=20% Similarity=0.304 Sum_probs=96.3
Q ss_pred cccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEE
Q 009664 256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVV 330 (529)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i 330 (529)
.+.+..+.|.|+|++|+||+..+..|.+||||++++.|+++ .+++|++++++.||+|||+|.|.+... ....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 34567899999999999999998888999999999998773 478999999999999999999998543 4679999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCC-ceeeEEEEc
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL 366 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 366 (529)
.|||++..+++++||++.++|+++... .....||+|
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999999999999999999999544 346778865
No 36
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.78 E-value=1.8e-18 Score=151.23 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=90.1
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEe---------------cCCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---------------DEST 325 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~---------------~~~~ 325 (529)
.|+|+|++|++|.. ..|.+||||++++.+.. .+.++|+++++|+||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999997 46899999999998432 24679999999999999999999985 1223
Q ss_pred CEEEEEEEECCCCCCCceeEEEEEECcccCCC-ceeeEEEEccccc
Q 009664 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKLVKDL 370 (529)
Q Consensus 326 ~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~ 370 (529)
..|.|.|||++..++|++||++.+++.++..+ .....||+|.+..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 57999999999888999999999999999876 5678999997654
No 37
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.78 E-value=1.9e-18 Score=148.30 Aligned_cols=111 Identities=21% Similarity=0.280 Sum_probs=94.8
Q ss_pred ccCcceEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEE-Ee--cCCCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VE--DESTQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~-v~--~~~~~~l~i~v 332 (529)
+....+.|+|+|++|++|+..+.. |.+||||++++.+...++.||++++++.||.|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 345678999999999999998876 899999999998766677899999999999999999993 43 22345799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCC--ceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 367 (529)
||++.+++|++||++.++|+++... .....|++|+
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999999998544 6678899885
No 38
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.78 E-value=2.3e-18 Score=147.33 Aligned_cols=110 Identities=20% Similarity=0.404 Sum_probs=94.8
Q ss_pred ccCcceEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 331 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~ 331 (529)
+....+.|.|+|++|+||+.++.. |.+||||++++.|..+ .++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 345678999999999999999875 8999999999987653 367999999999999999999998653 35689999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCC---ceeeEEEEc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELEPG---KVKDVWLKL 366 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L 366 (529)
|||++.++++++||++.++|+++... .....||+|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999989999999999999998543 456789987
No 39
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.78 E-value=9.8e-19 Score=146.47 Aligned_cols=103 Identities=26% Similarity=0.511 Sum_probs=89.5
Q ss_pred eEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC---CCCEEEEEEEECCC
Q 009664 262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 337 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~~~~l~i~v~d~~~ 337 (529)
|+|+|+|++|++|+..+.. |.+||||++++.+.+...++|+++++++||+|||+|.|.+... ..+.|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999975445678999999999999999999987543 34689999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
+++|++||++.+++.++.. ...|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 9999999999999999873 34577663
No 40
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.78 E-value=5.7e-18 Score=147.06 Aligned_cols=120 Identities=22% Similarity=0.398 Sum_probs=100.6
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC---------CCCEEEEEEE
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVRIY 333 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------~~~~l~i~v~ 333 (529)
.|+|+|++|++|+.+|..|.+||||+++++ ++.++|++++++.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999997 6788999999999999999999975432 1257999999
Q ss_pred ECCCCCCCceeEEEEE-ECcccC---CCceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 334 DDEGIQSSELIGCAQV-RLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i-~l~~l~---~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
|++..++|++||++.+ ++..+. .+.....|++|.+ .+...|+|.+++.+.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEEe
Confidence 9999989999999986 444443 3466789999953 35678999999999864
No 41
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=5.3e-18 Score=144.31 Aligned_cols=118 Identities=26% Similarity=0.520 Sum_probs=99.5
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|.|+|++|++|.+++..|.+||||+++++ +....+|+++.++.||.|||.|.|.+.+. .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999986 23357999999999999999999998654 3689999999999999999
Q ss_pred eEEEEEECcccCCC-ceeeEEEEcccccccccCCccccEEEEEEE
Q 009664 344 IGCAQVRLCELEPG-KVKDVWLKLVKDLDVQRDTKYRGQVHLELL 387 (529)
Q Consensus 344 lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~ 387 (529)
||++.+++.++..+ ...+.|++|.+. .......|+|++.+.
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEEEE
Confidence 99999999888653 346899999653 223457899998864
No 42
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.77 E-value=3.7e-18 Score=145.71 Aligned_cols=110 Identities=30% Similarity=0.404 Sum_probs=98.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEE-Eec--CCCCEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIY 333 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~-v~~--~~~~~l~i~v~ 333 (529)
+....+.|.|+|++|+||+..+..|.+||||++.+.+...++++|+++++ .||+|||+|.|. +.. .....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 44677899999999999999998899999999999877777889999887 999999999998 542 24568999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|++.++++++||++.++|+++..+.....|++|+
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999999999999999999998888899999985
No 43
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.77 E-value=4.5e-18 Score=140.99 Aligned_cols=100 Identities=31% Similarity=0.413 Sum_probs=89.8
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|.|+|++|++|+..+..+.+||||+++++ ++.++|++++++.||.|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 378999999999999888999999999997 578999999999999999999999988767799999999886 78
Q ss_pred eeEEEEEECcccCCCc--eeeEEEEccc
Q 009664 343 LIGCAQVRLCELEPGK--VKDVWLKLVK 368 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~--~~~~~~~L~~ 368 (529)
+||++.++|.++...+ ..+.||+|..
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecCC
Confidence 9999999999986543 6789999953
No 44
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.77 E-value=8.8e-18 Score=145.46 Aligned_cols=116 Identities=24% Similarity=0.453 Sum_probs=100.5
Q ss_pred ceEEEEEEEEecCCCccCCC----------CCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEE
Q 009664 261 VGTLEVKLVQAKGLTNKDLI----------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 330 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i 330 (529)
.|.|+|+|++|++|...+.. |.+||||+++++ +.+..+|+++.++.||.|||+|.|.+.+ ...|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence 58999999999999988752 579999999997 2345789999999999999999999963 468999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCC--CceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
.|||++..+++++||++.++|.++.. +...+.|++|. +.|+|++++.|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEEEEEec
Confidence 99999988889999999999999876 56789999984 4599999999874
No 45
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=1.2e-17 Score=143.69 Aligned_cols=117 Identities=31% Similarity=0.454 Sum_probs=101.5
Q ss_pred EEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCCCCceeE
Q 009664 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSSELIG 345 (529)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~~~d~~lG 345 (529)
|++|++|+. ..|.+||||+++++ +..++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 678999998 67899999999996 5678999999999999999999999754 4678999999999988999999
Q ss_pred EEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEccc
Q 009664 346 CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (529)
Q Consensus 346 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~ 393 (529)
++.++++++..+.....|++|.... .....|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDSN----GRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCCC----CCcccEEEEEEEEEeCCCC
Confidence 9999999999888889999996421 2335799999999998753
No 46
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.76 E-value=7.1e-18 Score=143.98 Aligned_cols=118 Identities=26% Similarity=0.533 Sum_probs=98.2
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC--C
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS--S 341 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~--d 341 (529)
|+|+|++|++|+..+..+.+||||+++++ +.+.++|++++++.||.|||+|.|.+.. .+.|.++|||++..+. |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999995 2567899999999999999999999965 5699999999998765 5
Q ss_pred ceeEEEEEECcccCCCc-eeeEEEEcccccccccCCccccEEEEEE
Q 009664 342 ELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~G~i~l~l 386 (529)
++||++.+++.++.... ....|++|.+... ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecCCC-CCCceEeeEEEEEe
Confidence 89999999999986443 3477999854321 22455689998875
No 47
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.76 E-value=4e-18 Score=146.28 Aligned_cols=111 Identities=25% Similarity=0.410 Sum_probs=98.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec---CCCCEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY 333 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~l~i~v~ 333 (529)
+....+.|+|+|++|++|+..+..+.+||||++++.+.+.+..+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 346678999999999999999988999999999997655677899999999999999999997432 23467999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|++..+++++||++.++++++..+...+.|+.|+
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999889999999999999998888889999985
No 48
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.76 E-value=3.7e-18 Score=144.34 Aligned_cols=106 Identities=25% Similarity=0.476 Sum_probs=91.5
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEEEecC-CCCEEEEEEEECC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~l~i~v~d~~ 336 (529)
..|.|.|+|++|+||+.++ .|.+||||++++.+...+ ++||++++++.||.|||+|.|.+... ....|.+.|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4689999999999999998 789999999999875543 66899999999999999999998543 2347899999998
Q ss_pred CCC-CCceeEEEEEECcccCCCceeeEEEEc
Q 009664 337 GIQ-SSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 337 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
... ++++||++.+++.++..+...+.||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 765 478999999999999877778899975
No 49
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=1.4e-17 Score=143.13 Aligned_cols=117 Identities=26% Similarity=0.461 Sum_probs=100.3
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|+|+|++|++|+..+..+.+||||++++.+...+.++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58899999999999998899999999997633345689999999999999999999997765678999999999888899
Q ss_pred eeEEEEEECcccCC---CceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 343 LIGCAQVRLCELEP---GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 343 ~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
+||++.++|+++.. +...+.|++|. ..|++++.+.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEe
Confidence 99999999987632 44678999984 258999998886
No 50
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.76 E-value=6.5e-18 Score=145.42 Aligned_cols=110 Identities=25% Similarity=0.425 Sum_probs=96.4
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+....+.|+|+|++|+||+..+..+.+||||++++.+.+ ..+++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 345679999999999999999988999999999998544 4578999999999999999999998543 456899999
Q ss_pred EECCCC--CCCceeEEEEEECcccCCCceeeEEEEc
Q 009664 333 YDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 333 ~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
||++.+ +++++||++.+++.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999887888999987
No 51
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.75 E-value=8.1e-18 Score=143.95 Aligned_cols=109 Identities=20% Similarity=0.445 Sum_probs=95.3
Q ss_pred cCcceEEEEEEEEecCCCccC-CCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
....|.|+|+|++|+||+..+ ..+.+||||++++.+... ..++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 456789999999999999988 678999999999975433 468999999999999999999998653 356899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
||++..+++++||++.++|+++..+...+.||+|
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999988999999999999999877778899986
No 52
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.75 E-value=1.5e-17 Score=142.29 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=98.2
Q ss_pred ccCcceEEEEEEEEecCCCccC-CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~ 333 (529)
+....+.|.|+|++|++|+..+ ..+.+||||++++.+.+.+.++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 4467789999999999999988 678899999999986666678999999999999999999998653 2357999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|++..+++++||++.++|+++........|++|.
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 9999888999999999999998888889999985
No 53
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.75 E-value=9.4e-18 Score=139.15 Aligned_cols=94 Identities=15% Similarity=0.294 Sum_probs=82.2
Q ss_pred eEEEEEEEEecCCCccCCC----CCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC-CCEEEEEEEECC
Q 009664 262 GTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDE 336 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-~~~l~i~v~d~~ 336 (529)
|+|.|+|++|++|+..+.. +.+||||+++++ ++.+||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987632 358999999996 66789999999999999999999986543 357999999999
Q ss_pred CCCCCceeEEEEEECcccCCCc
Q 009664 337 GIQSSELIGCAQVRLCELEPGK 358 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~ 358 (529)
..+.|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999986544
No 54
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.75 E-value=2.1e-17 Score=141.89 Aligned_cols=115 Identities=32% Similarity=0.642 Sum_probs=97.0
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC----
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI---- 338 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~---- 338 (529)
.|+|+|++|++|+..|..|.+||||+++++ ...++|+++.++.||.|||+|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 689999999999999988999999999986 5678999999999999999999988654 45899999999852
Q ss_pred -------CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEE
Q 009664 339 -------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (529)
Q Consensus 339 -------~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l 386 (529)
+.+++||++.+++.++.. ..+.|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~---~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT---DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC---CCCcEeEEEEEEC
Confidence 468999999999998753 357899998643 2456789998864
No 55
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=1.4e-17 Score=142.88 Aligned_cols=109 Identities=24% Similarity=0.423 Sum_probs=91.9
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC---CCCEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRI 332 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~~~~l~i~v 332 (529)
....|.|+|+|++|++|+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 35678999999999999999988999999999997533 2567999999999999999999986432 356899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
||++..+++++||++.++|++. .......||+|+
T Consensus 92 ~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~ 125 (125)
T cd04031 92 WDYDRDGENDFLGEVVIDLADA-LLDDEPHWYPLQ 125 (125)
T ss_pred EeCCCCCCCcEeeEEEEecccc-cccCCcceEECc
Confidence 9999988999999999999983 233456899883
No 56
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.73 E-value=2.2e-17 Score=144.77 Aligned_cols=103 Identities=39% Similarity=0.709 Sum_probs=90.8
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--------------------------CeEeccccCCCCCCee
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--------------------------KTKKSKTINNDLNPIW 312 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--------------------------~~~kT~~~~~t~nP~W 312 (529)
++.+.|.|+|++|++|.++|..|.+||||++++.+... ..++|+++.+++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 68899999999999999999999999999999964321 3478999999999999
Q ss_pred ccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEc
Q 009664 313 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 313 ne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
||+|.|.+.+...+.|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999998766779999999997 8899999999999883 456899986
No 57
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.73 E-value=1.9e-17 Score=138.35 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=89.0
Q ss_pred EEEEEEEecCCCccCC-CCCCCcEEEEEEecCCCCeEeccccCCCCCCee-ccEEEEEEecC--CCCEEEEEEEECCCCC
Q 009664 264 LEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW-NEHFEFIVEDE--STQHLVVRIYDDEGIQ 339 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~W-ne~f~~~v~~~--~~~~l~i~v~d~~~~~ 339 (529)
|.|+|++|++|+.++. .|.+||||+++++ ++.++|+++++++||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 5899999999998884 6889999999997 47899999999999999 99999998654 3468999999999999
Q ss_pred CCceeEEEEEECcccCC---CceeeEEEEcc
Q 009664 340 SSELIGCAQVRLCELEP---GKVKDVWLKLV 367 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~~---~~~~~~~~~L~ 367 (529)
++++||++.+++.++.. +...+.||+|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999999866 44578899985
No 58
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.72 E-value=1.7e-16 Score=138.86 Aligned_cols=123 Identities=21% Similarity=0.270 Sum_probs=98.2
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEe-c-CCCCeEeccccCCCCCCeeccEEEEEEecCC--------CCEEEEE
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR-P-LPEKTKKSKTINNDLNPIWNEHFEFIVEDES--------TQHLVVR 331 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~-~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~--------~~~l~i~ 331 (529)
|.|+|....+.+|+..+..+.+||||++++. + ...++.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4445554444447788777899999999973 3 3456899999999999999999999995432 4579999
Q ss_pred EEECCCC-CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 332 IYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 332 v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
|||++.+ ++|++||++.++|+.+........|++|.. ......|+|+++++.-
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-----~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-----GRKATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-----CCCCcCCEEEEEEEec
Confidence 9999986 579999999999999987777778999853 2345679999999875
No 59
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=8.8e-17 Score=135.75 Aligned_cols=114 Identities=36% Similarity=0.564 Sum_probs=98.6
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|+|+|++|++|+..+..+.+||||++++. +.+.++|+++.++.||.|||+|.|.+.+...+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999996 2456899999999999999999999987666799999999998889999
Q ss_pred eEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEE
Q 009664 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHL 384 (529)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l 384 (529)
||++.+++.++..+...+.|++|.+. ++...|.+.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~-----g~~~~~~~~~ 114 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQ-----GGGKLGAVFL 114 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCC-----CCccCceEEc
Confidence 99999999999888888999999642 3455666643
No 60
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.72 E-value=4.2e-17 Score=145.46 Aligned_cols=109 Identities=22% Similarity=0.393 Sum_probs=94.8
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEe---cCCCCEEEEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---DESTQHLVVRIY 333 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~---~~~~~~l~i~v~ 333 (529)
.+.|.|.|+|++|++|+..+..|.+||||++++.+.. ..+++|++++++.||.|||+|.|.+. +.....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 4679999999999999999988999999999997543 35789999999999999999999853 223458999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|++.++++++||++.++++++......+.|+.+.
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 9999989999999999999987766778898874
No 61
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.72 E-value=1.1e-15 Score=164.31 Aligned_cols=297 Identities=23% Similarity=0.370 Sum_probs=201.6
Q ss_pred CCcchHHHHHHHHHHHhhhcccccc-------ccc---CCCC-CC-cc-ccccCcceEEEEEEEEecCCCccCCCCCCCc
Q 009664 219 IPGLSDSIEATIHDAIEDSITWPVR-------KIV---PILP-GD-YS-ELELKPVGTLEVKLVQAKGLTNKDLIGKSDP 285 (529)
Q Consensus 219 ~P~l~~~~~~~i~~~i~~~~~~P~~-------~~i---pl~~-~~-~~-~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dp 285 (529)
++....-+...|.......++.|.+ ++. |+.- +. -+ .....+.|.++|.|..|.++......+++||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 4445555567777777777777765 111 3321 11 11 1234789999999999999998888899999
Q ss_pred EEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCC---ceeeE
Q 009664 286 YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG---KVKDV 362 (529)
Q Consensus 286 yv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~---~~~~~ 362 (529)
|+++.+. +..++||-....++||.||+..+..+..+. +.+.+++.|++..+.|..+|++.++++++... .....
T Consensus 735 ya~v~~n--~~~k~rti~~~~~~npiw~~i~Yv~v~sk~-~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVN--NLVKYRTIYGSSTLNPIWNEILYVPVTSKN-QRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEec--ceeEEEEecccCccccceeeeEEEEecCCc-cEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999997 356788888899999999999888887764 57999999999999999999999999987431 11111
Q ss_pred EEE---cccccccccCCccccEEEEEEEEEEcccC---------------------------------------------
Q 009664 363 WLK---LVKDLDVQRDTKYRGQVHLELLYCPFGME--------------------------------------------- 394 (529)
Q Consensus 363 ~~~---L~~~~~~~~~~~~~G~i~l~l~~~p~~~~--------------------------------------------- 394 (529)
.+. ....+... +.+.+|++.+.+.|.|..-.
T Consensus 812 ~i~g~~~t~~l~~~-~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~ 890 (1227)
T COG5038 812 TIDGAEETGKLSLT-GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIE 890 (1227)
T ss_pred eecCcccccccccc-cCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhccee
Confidence 110 00001001 23456777777777653100
Q ss_pred -----C------------------C---------------------CCC-------------------------------
Q 009664 395 -----N------------------V---------------------FTN------------------------------- 399 (529)
Q Consensus 395 -----~------------------~---------------------~~~------------------------------- 399 (529)
. + ..+
T Consensus 891 v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~ 970 (1227)
T COG5038 891 VEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEY 970 (1227)
T ss_pred eccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhcc
Confidence 0 0 000
Q ss_pred -------------------------------CCCCC--Ccchh----------------h-------------------h
Q 009664 400 -------------------------------PFAPN--FSMTS----------------L-------------------E 411 (529)
Q Consensus 400 -------------------------------~~~~~--~~~~~----------------l-------------------~ 411 (529)
.+... +.... + .
T Consensus 971 s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~ 1050 (1227)
T COG5038 971 SETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGE 1050 (1227)
T ss_pred ceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccC
Confidence 00000 00000 0 0
Q ss_pred hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEe
Q 009664 412 KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILT 490 (529)
Q Consensus 412 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~ 490 (529)
.+...+.++.+++|+++.+ ++++.+||+++++|+||+|||.|+..|.+...+.+.+.|+|++..++ |.||.+.++
T Consensus 1051 nl~~~d~ng~sDpfv~~~l----n~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~id 1126 (1227)
T COG5038 1051 NLPSSDENGYSDPFVKLFL----NEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEID 1126 (1227)
T ss_pred CCcccccCCCCCceEEEEe----cceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCcccccccccc
Confidence 0111233445667776654 45568999999999999999999999988888999999999998766 899999999
Q ss_pred cccccccceeeeEEEcCCCC----ccEEEEEEEEEeC
Q 009664 491 LTRVILEGEYTDCFELDGTK----SGKLKLHLKWMPQ 523 (529)
Q Consensus 491 L~~l~~~~~~~~w~~L~~~~----~G~i~l~~~~~~~ 523 (529)
|+.+..++..+.-.+|+|.. .|.++....+++.
T Consensus 1127 L~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1127 LSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred HhhcCcCCccceeeeccCcceEecccEeecceecchh
Confidence 99999888878888888753 4566666555553
No 62
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.72 E-value=4.3e-17 Score=139.82 Aligned_cols=115 Identities=27% Similarity=0.488 Sum_probs=97.4
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccC-CCCCCeeccEEEEEEecCC----CCEEEEEEEECCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG 337 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~----~~~l~i~v~d~~~ 337 (529)
+|+|+|++|++|+..+..+.+||||++++++ .+.++|+++. ++.||.|||.|.|.+.+.. ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 4899999999999998889999999999972 3677888874 6899999999999997763 5789999999998
Q ss_pred CCCCceeEEEEEECcccCCCce-----eeEEEEcccccccccCCccccEEEE
Q 009664 338 IQSSELIGCAQVRLCELEPGKV-----KDVWLKLVKDLDVQRDTKYRGQVHL 384 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~~~G~i~l 384 (529)
+++|++||++.+++.++..+.. ...|+.|... +++.+|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-----~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-----SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-----CCCcCeEEeC
Confidence 8889999999999999865443 4689999742 4788898864
No 63
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.71 E-value=8.1e-17 Score=139.01 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=92.7
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v 332 (529)
+.+..+.|.|+|++|+||+..+..|.+||||++++.+.+.+ ++||+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 44667899999999999999998899999999999865443 5689999999999999999999864 3456899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||+|.++++++||++.++... .+...++|..+..
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 999999999999999997653 4555667776653
No 64
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=7.5e-17 Score=134.81 Aligned_cols=101 Identities=22% Similarity=0.375 Sum_probs=85.6
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
.|.|.|+|++|++|+..+ ..||||++.++ +++.+|++.++ .||.|||.|.|.+.+... .|.|+|||++.. .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc-C
Confidence 368999999999997654 46899999997 67788998877 599999999999977544 599999999865 8
Q ss_pred CceeEEEEEECcccCCCcee--eEEEEccccc
Q 009664 341 SELIGCAQVRLCELEPGKVK--DVWLKLVKDL 370 (529)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~ 370 (529)
||+||++.++|+++..+... .+||+|.+..
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 99999999999998765554 7999998654
No 65
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.71 E-value=1.1e-16 Score=136.01 Aligned_cols=95 Identities=25% Similarity=0.408 Sum_probs=83.2
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec-CCCCEEEEEEEECC
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYDDE 336 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~-~~~~~l~i~v~d~~ 336 (529)
.++.|.|+|+|++|++|+. +..+.+||||+++++ +++++|++++++.||+|||+|.|.... ...+.|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 3678999999999999984 667889999999996 558999999999999999999997533 34679999999999
Q ss_pred CCCCCceeEEEEEECcccCC
Q 009664 337 GIQSSELIGCAQVRLCELEP 356 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~ 356 (529)
..++|++||++.++|.....
T Consensus 100 ~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 100 NGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCCCeeEEEEEEecCCce
Confidence 99999999999999986553
No 66
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.71 E-value=3.2e-17 Score=135.72 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=89.0
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDF 459 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f 459 (529)
|+|++++.|.|.. ..+.+..+++.... ..+.++||+++++....+ ..++||+++++|.||+|||+|.|
T Consensus 1 ~~l~fsL~Y~~~~----------~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F 68 (118)
T cd08677 1 PKLHYSLSYDKQK----------AELHVNILEAENIS-VDAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVF 68 (118)
T ss_pred CeEEEEEEEcCcC----------CEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEE
Confidence 5789999998764 23344444332211 345689999999865443 45779999999999999999999
Q ss_pred Eeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEc
Q 009664 460 VVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 506 (529)
Q Consensus 460 ~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L 506 (529)
.++. ..+..|.|+|||+|++++ ++||++.++++++......++|-.|
T Consensus 69 ~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 69 PLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred eCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9963 467889999999999987 8999999999998666666788654
No 67
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.71 E-value=8.7e-17 Score=139.53 Aligned_cols=106 Identities=22% Similarity=0.373 Sum_probs=92.9
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecC-CCCeEeccccCCCCCCeeccEEEEEEecC---------------CCCE
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQH 327 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------------~~~~ 327 (529)
|+|+|++|++|+.+ ..|.+||||++++... ....++|+++.++.||.|||+|.|.+... ..+.
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999732 24678999999999999999999998765 4568
Q ss_pred EEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEccccc
Q 009664 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL 370 (529)
Q Consensus 328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 370 (529)
|.|+|||++..+++++||++.+++.++........|++|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998889999999999999988777789999998654
No 68
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.70 E-value=9.7e-17 Score=137.39 Aligned_cols=104 Identities=39% Similarity=0.644 Sum_probs=92.8
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccC-CCCCCeeccEEEEEEecC---CCCEEEEEEEECCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 337 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~---~~~~l~i~v~d~~~ 337 (529)
|.|+|+|++|++|+..+..+.+||||++++. ++.++|+++. ++.||.|||+|.|.+... ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888999999999986 5567888877 489999999999999876 35689999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
++++++||++.+++.++..+...+.|+.|.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999987777899999865
No 69
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.70 E-value=4.3e-16 Score=134.35 Aligned_cols=118 Identities=19% Similarity=0.368 Sum_probs=96.3
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCC----------CCeEeccccCCCCCCee-ccEEEEEEecCCCCEEEEE
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----------EKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR 331 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----------~~~~kT~~~~~t~nP~W-ne~f~~~v~~~~~~~l~i~ 331 (529)
+..|++++|++|+ ++..|++||||++++.+.+ ++.++|+++++++||+| ||+|.|.+.. .+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4678999999998 7778999999999997544 24789999999999999 9999999853 4689999
Q ss_pred EEECCCCCC---CceeEEEEEECcccCCC---ceeeEEEEcccccccccCCccccEEEEEE
Q 009664 332 IYDDEGIQS---SELIGCAQVRLCELEPG---KVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (529)
Q Consensus 332 v~d~~~~~~---d~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~~~~~~G~i~l~l 386 (529)
|||++..++ +++||++.+++.++..+ .....|++|.+.. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEEe
Confidence 999865433 79999999999998644 2366799998654 2566789998865
No 70
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.70 E-value=3.9e-17 Score=140.85 Aligned_cols=111 Identities=21% Similarity=0.371 Sum_probs=92.2
Q ss_pred cccCcceEEEEEEEEecCCCccCC--CCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEE
Q 009664 256 LELKPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLV 329 (529)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~ 329 (529)
.+.+..|.|.|+|++|+||..+|. .+.+||||++++.+.+. .++||+++++++||+|||+|.|.+... ....|.
T Consensus 9 ~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~ 88 (138)
T cd08407 9 SYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVE 88 (138)
T ss_pred EEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEE
Confidence 345678999999999999999883 34599999999986543 367999999999999999999998653 356899
Q ss_pred EEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 330 VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 330 i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
|+|||+|.++++++||++.+++.. .+...++|..+..
T Consensus 89 ~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 89 LEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 999999999999999999999975 4556667776643
No 71
>PLN03008 Phospholipase D delta
Probab=99.70 E-value=1.8e-16 Score=167.90 Aligned_cols=129 Identities=22% Similarity=0.512 Sum_probs=109.8
Q ss_pred cceEEEEEEEEecCCCccCC------------------------------------------CCCCCcEEEEEEecCCCC
Q 009664 260 PVGTLEVKLVQAKGLTNKDL------------------------------------------IGKSDPYAVLFVRPLPEK 297 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~ 297 (529)
-.|.|.++|.+|++|+++|. .+++||||++.++ +.+
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~r 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QAT 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Ccc
Confidence 46899999999999886331 2467999999996 244
Q ss_pred eEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCc
Q 009664 298 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTK 377 (529)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~ 377 (529)
..||++++++.||+|||+|.|.+.++. ..|.|.|||+|.++ +++||++.+|+.++..+...+.|++|....+ +..+
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--kp~k 165 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG--KPPK 165 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC--CCCC
Confidence 679999999999999999999998865 48999999999986 5899999999999999999999999987653 3456
Q ss_pred cccEEEEEEEEEEcccC
Q 009664 378 YRGQVHLELLYCPFGME 394 (529)
Q Consensus 378 ~~G~i~l~l~~~p~~~~ 394 (529)
..|+|+++++|.|+...
T Consensus 166 ~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 166 AETAIFIDMKFTPFDQI 182 (868)
T ss_pred CCcEEEEEEEEEEcccc
Confidence 67899999999998764
No 72
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.1e-16 Score=132.31 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=88.1
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
..|.++||+.+++ .+...++|++++++.||.|||.|+|.+.++....|.|+|+|++..++++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v----~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 9 KTGLLSPYAELYL----NGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA 84 (111)
T ss_pred cCCCCCceEEEEE----CCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh
Confidence 3566789998886 233467999999999999999999999887778899999999988558999999999999765
Q ss_pred c-eeeeEEEcCCCCccEEEEEEEEEeC
Q 009664 498 G-EYTDCFELDGTKSGKLKLHLKWMPQ 523 (529)
Q Consensus 498 ~-~~~~w~~L~~~~~G~i~l~~~~~~~ 523 (529)
+ ...+||+|.+...|+|++++.|+|+
T Consensus 85 ~~~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 TSVGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred hhccceeEECCCCCCCEEEEEEEEecC
Confidence 3 4589999998889999999999985
No 73
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=6.2e-17 Score=140.41 Aligned_cols=110 Identities=25% Similarity=0.427 Sum_probs=93.7
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+....|.|.|+|++|++|+..|..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 445679999999999999999988999999999998543 2467999999999999999999998643 346899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++..+++++||++.+++.. .+...++|+.+.+
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999988899999999999985 4455678988764
No 74
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.68 E-value=2.6e-16 Score=137.23 Aligned_cols=93 Identities=29% Similarity=0.587 Sum_probs=85.0
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
.|.|+|+|++|++|+..+. +.+||||+++++ ++..+|++++++.||+|||+|.|.+.++ .+.+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999999887 899999999996 6789999999999999999999999877 5689999999999999
Q ss_pred CceeEEEEEECcccCCCc
Q 009664 341 SELIGCAQVRLCELEPGK 358 (529)
Q Consensus 341 d~~lG~~~i~l~~l~~~~ 358 (529)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999986543
No 75
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=2.3e-16 Score=133.76 Aligned_cols=103 Identities=25% Similarity=0.425 Sum_probs=91.1
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d 341 (529)
|.|+|+|++|++|+..+..|.+||||+++++ +...++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999995 23568899999999999999999988765 46899999999999999
Q ss_pred ceeEEEEEECcccCCCceeeEEEEccc
Q 009664 342 ELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
++||++.+++.++..+ ..+.||.|..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999776 5578888864
No 76
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2.7e-16 Score=137.72 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=85.6
Q ss_pred EEEEEEEEecCCCccCCCC--------------CCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC-CCCE
Q 009664 263 TLEVKLVQAKGLTNKDLIG--------------KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQH 327 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~ 327 (529)
.|.|+|++|++|+.+|..+ .+||||++.++ ++..+|++++++.||+|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999997 5677999999999999999999997544 3468
Q ss_pred EEEEEEECCCCCCCceeEEEEEECcccCCCce-------eeEEEEcc
Q 009664 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKV-------KDVWLKLV 367 (529)
Q Consensus 328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~ 367 (529)
|.|+|||+|..++|++||++.+++.++..... ...|+.+.
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 99999999999899999999999999865432 24666663
No 77
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.68 E-value=1.7e-16 Score=135.78 Aligned_cols=119 Identities=19% Similarity=0.329 Sum_probs=92.6
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcCCc-ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNGEK-ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~-~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne 455 (529)
+|+|++++.|.+... .+.+..+++ +...+.. +.++||+++++........++||++++++.||+|||
T Consensus 1 ~G~i~~sl~y~~~~~----------~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE 70 (125)
T cd08393 1 QGSVQFALDYDPKLR----------ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNE 70 (125)
T ss_pred CcEEEEEEEEECCCC----------EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCc
Confidence 699999999986532 223332222 2223333 678999999987765555678999999999999999
Q ss_pred eEEEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 456 TFDFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 456 ~f~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
.|.|.+.. .....|.++|||++..++ ++||++.++|.++........||+|.
T Consensus 71 ~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 71 TLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred eEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999863 356789999999998876 89999999999997776678999984
No 78
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=2.6e-16 Score=131.69 Aligned_cols=102 Identities=25% Similarity=0.477 Sum_probs=87.1
Q ss_pred CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCC-C
Q 009664 279 LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-G 357 (529)
Q Consensus 279 ~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~-~ 357 (529)
.+|.+||||+++++ +...++|++++++.||.|||.|.|.+.+...+.|.|.|||++.+ ++++||++.++|.++.. +
T Consensus 9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999996 22467999999999999999999999877667899999999988 89999999999999843 4
Q ss_pred ceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 358 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 358 ~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
...+.|++|.. ...|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~~--------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLSG--------NGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECCC--------CCCCEEEEEEEEecC
Confidence 45689999952 457999999999873
No 79
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.68 E-value=2.2e-16 Score=134.86 Aligned_cols=119 Identities=18% Similarity=0.349 Sum_probs=92.6
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcC-CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNG-EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~-~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne 455 (529)
+|+|++++.|.+... .+.+..+++ +...+ ..+.+++|+++++........++||++++++.||+|||
T Consensus 1 ~G~i~~sl~y~~~~~----------~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE 70 (125)
T cd04029 1 SGEILFSLSYDYKTQ----------SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNE 70 (125)
T ss_pred CcEEEEEEEEECCCC----------eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccc
Confidence 589999999976442 233333322 21222 23678899999987665555678999999999999999
Q ss_pred eEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 456 TFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 456 ~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
+|.|.++.. ....|.|+|||++..++ ++||++.++|.++........||+|.
T Consensus 71 ~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 71 TLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred eEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999642 46689999999998876 79999999999998888889999984
No 80
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=3.3e-16 Score=135.99 Aligned_cols=122 Identities=20% Similarity=0.294 Sum_probs=94.6
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhc-CCcccCCCceEEEEEEEccCCeeEeeecccCCCCC
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTN-GEKALKSGANGTEAIELEKDASQKRREVVNDCLNP 451 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~-~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP 451 (529)
.....|+|++++.|. . ..+.+..+++ +... +..+.++||++++++..+....++||+++++|+||
T Consensus 13 ~~~~~G~l~lsl~y~--~----------~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnP 80 (146)
T cd04028 13 ASPSMGDIQLGLYDK--K----------GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDP 80 (146)
T ss_pred cCCCcceEEEEEEeC--C----------CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCC
Confidence 345679999999993 1 2233333332 2222 23467899999998776555568999999999999
Q ss_pred ccCceEEEEeecCCCCEEEEEEE-ECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 452 IWNQTFDFVVEDGLHDMLIAEVW-DHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 452 ~wne~f~f~v~~~~~~~L~i~V~-D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
+|||+|+|.+. ..+..|.|+|| |++.+++ ++||++.|+|+++........||+|.+.
T Consensus 81 vfNE~F~f~v~-l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 81 LYQQQLVFDVS-PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred ccCCeEEEEEc-CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 99999999998 67789999999 5776655 8999999999998766677899999864
No 81
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=6.7e-16 Score=133.97 Aligned_cols=112 Identities=19% Similarity=0.294 Sum_probs=93.0
Q ss_pred cccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC---eEeccccCCCCCCeeccEEEEEEec--CCCCEEEE
Q 009664 256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVV 330 (529)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i 330 (529)
.+....+.|.|+|++|+||+.++..|.+||||++++.+..++ ++||++++++.||+|||+|.|.+.. ..+..|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 345678999999999999999998899999999999865432 5799999999999999999999864 34568999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
.|||++.++++++||++.+++..... ...++|..+..
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 99999999999999999998864322 23457877653
No 82
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=4.3e-16 Score=130.54 Aligned_cols=99 Identities=22% Similarity=0.375 Sum_probs=85.6
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC----CCEEEEEEEECCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG 337 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~----~~~l~i~v~d~~~ 337 (529)
-.|+|+|++|++|. .|.+||||+++++ +++++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 36899999999998 4789999999998 56789999999999999999999975432 4589999999999
Q ss_pred CCCCceeEEEEEECcccCCC---ceeeEEEEcc
Q 009664 338 IQSSELIGCAQVRLCELEPG---KVKDVWLKLV 367 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~ 367 (529)
+++|++||++.++|+++..+ .....|++|.
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 88899999999999998655 3357899885
No 83
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.67 E-value=2.7e-16 Score=133.72 Aligned_cols=115 Identities=19% Similarity=0.317 Sum_probs=90.5
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|++++.|.. ..+.+..+ +.+...+ .+.++||+++++........++||++++++.||+|||+|
T Consensus 2 G~l~~~l~y~~------------~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F 68 (122)
T cd08381 2 GQVKLSISYKN------------GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEML 68 (122)
T ss_pred CeEEEEEEEeC------------CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEE
Confidence 88999999871 12222222 2222334 567899999998776555678899999999999999999
Q ss_pred EEEe-e--cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 458 DFVV-E--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 458 ~f~v-~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
+|.+ + +.....|.|+|||++.+++ ++||++.++|+++...+....||+|.
T Consensus 69 ~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 122 (122)
T cd08381 69 VYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG 122 (122)
T ss_pred EEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence 9987 3 3466799999999998876 89999999999998777779999983
No 84
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.67 E-value=6.3e-16 Score=133.85 Aligned_cols=98 Identities=27% Similarity=0.380 Sum_probs=86.2
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC----CCeEeccccCCCCCCeeccEEEEEEecC----CCCEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV 330 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~----~~~~l~i 330 (529)
...+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 4568999999999999999888999999999997543 3578999999999999999999998653 3458999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCC
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEP 356 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~ 356 (529)
+|||++..+++++||++.++|+++..
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999999889999999999999863
No 85
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.67 E-value=5e-16 Score=130.87 Aligned_cols=96 Identities=19% Similarity=0.341 Sum_probs=81.1
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccC-CCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecc-ccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLT-RVI 495 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~-~l~ 495 (529)
.+.++||+++.+ +.+++||+++.+ +.||+|||.|+|.+.+. ...|.|+|||++.+++ ++||++.+++. .+.
T Consensus 19 ~g~sDPYv~i~l-----g~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 92 (121)
T cd04016 19 LTRMDPYCRIRV-----GHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDERIAWTHITIPESVF 92 (121)
T ss_pred CCCCCceEEEEE-----CCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCceEEEEEEECchhcc
Confidence 357889999886 667789999876 79999999999999764 4679999999999986 79999999996 465
Q ss_pred ccceeeeEEEcCC----CCccEEEEEEEE
Q 009664 496 LEGEYTDCFELDG----TKSGKLKLHLKW 520 (529)
Q Consensus 496 ~~~~~~~w~~L~~----~~~G~i~l~~~~ 520 (529)
.....++||+|.+ ...|+|+|+++|
T Consensus 93 ~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 93 NGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 5555799999986 457999999975
No 86
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.66 E-value=4.3e-16 Score=133.31 Aligned_cols=119 Identities=19% Similarity=0.304 Sum_probs=91.6
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCC-cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGE-KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne 455 (529)
.|+|++++.|.+... .+.+..+ +.+...+. .+.+++|++++++.......++||++++++.||+|||
T Consensus 1 ~G~i~~sl~Y~~~~~----------~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE 70 (128)
T cd08392 1 TGEIEFALHYNFRTS----------CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNE 70 (128)
T ss_pred CcEEEEEEEEeCCCC----------EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccce
Confidence 489999999986542 2222222 22222333 2678999999998776666688999999999999999
Q ss_pred eEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccccccc---ceeeeEEEcC
Q 009664 456 TFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE---GEYTDCFELD 507 (529)
Q Consensus 456 ~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~---~~~~~w~~L~ 507 (529)
+|.|.++.. ....|.+.|||.+.+++ ++||++.|+|+++... ....+||+|+
T Consensus 71 ~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 71 TLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred EEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 999998643 45799999999998766 8999999999998553 2468999985
No 87
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.66 E-value=3.6e-16 Score=132.73 Aligned_cols=112 Identities=10% Similarity=0.211 Sum_probs=90.2
Q ss_pred ccccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCC-CCeeccEEEEEEecCC-CCEEEE
Q 009664 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDL-NPIWNEHFEFIVEDES-TQHLVV 330 (529)
Q Consensus 255 ~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~-nP~Wne~f~~~v~~~~-~~~l~i 330 (529)
.++.+..|.|+|+|++|+||++.+..+.+||||++++...+++ ++||+++++|+ ||.|||+|.|.+.... +-.|.+
T Consensus 7 L~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 7 TCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred eeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 3566788999999999999998765667799999999855443 68899999995 6999999999986532 347889
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
+|||++..+++++||++.++.+.. .+...++|..+.
T Consensus 87 ~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~ 122 (135)
T cd08692 87 KLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI 122 (135)
T ss_pred EEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence 999999988999999999999763 333456776654
No 88
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.66 E-value=2e-16 Score=137.35 Aligned_cols=110 Identities=29% Similarity=0.485 Sum_probs=91.5
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+....|.|+|+|++|++|++.+..|.+||||++++.+.+. ..++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4467899999999999999999999999999999974332 467899999999999999999987542 334799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++..+++++||++.+++. ..+...+.|+.+..
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~ 122 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA 122 (134)
T ss_pred EECCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence 99999999999999999987 33455567877653
No 89
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.66 E-value=1.9e-16 Score=137.83 Aligned_cols=109 Identities=23% Similarity=0.369 Sum_probs=92.1
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~ 333 (529)
....+.|.|+|++|++|+..|..|.+||||++++.+.+. .+++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 356789999999999999999889999999999975433 257899999999999999999998542 3457999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
|++.++++++||++.+++.. .+....+|+.+..
T Consensus 91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred ECCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 99999999999999999988 4555678888753
No 90
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.66 E-value=1.4e-15 Score=132.44 Aligned_cols=110 Identities=30% Similarity=0.449 Sum_probs=92.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+.+..|.|+|+|++|++|+.++..|.+||||++++.+.+. ..++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4567899999999999999999889999999999974332 467899999999999999999997543 234799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++.+++|++||++.+++... +...++|+++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 9999999999999999999763 445567777753
No 91
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.66 E-value=1.9e-15 Score=130.75 Aligned_cols=125 Identities=18% Similarity=0.327 Sum_probs=99.9
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
+-...|.|.|++|++|+.++ +|||.+.++ +....||+++.++.||.|+|.|.|..... ...+.|.||+.+..
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~ 79 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCc
Confidence 55678999999999998754 799999997 23346999999999999999999975443 35799999875532
Q ss_pred ----CCCceeEEEEEECcccCCCceeeEEEEcccccccc-----cCCccccEEEEEEEEEEc
Q 009664 339 ----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-----RDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 339 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-----~~~~~~G~i~l~l~~~p~ 391 (529)
.++++||.+.|++.++..+...+.||+|....... ......++|+++++|.+.
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 25789999999999999999999999998654211 012445899999999875
No 92
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=7.9e-16 Score=133.93 Aligned_cols=110 Identities=23% Similarity=0.395 Sum_probs=91.8
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v 332 (529)
+....|.|.|+|++|++|+..+..|.+||||++++.+.+ ...++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 445679999999999999999988999999999996432 236789999999999999999998753 2346899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++.++++++||++.+++.+. +...++|+.+..
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 9999999999999999999875 444567776653
No 93
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.65 E-value=2.1e-15 Score=129.02 Aligned_cols=118 Identities=24% Similarity=0.415 Sum_probs=93.8
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d 341 (529)
..|+|+|.+|+ |...+..+.+||||+++++ +...++|++++++.||.|||+|.|.+.. .+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--CcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 5555557889999999996 2237899999999999999999999854 46899999999999899
Q ss_pred ceeEEEEEECcccCCCc---e--eeEEEEcccccccccCCccccEEEEEE
Q 009664 342 ELIGCAQVRLCELEPGK---V--KDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~~~~~~~~G~i~l~l 386 (529)
++||++.++|.++.... . ...|+++.+.. ....+..|+|.+++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEEe
Confidence 99999999999985432 2 23588886432 11346789998875
No 94
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=5.5e-16 Score=132.38 Aligned_cols=92 Identities=28% Similarity=0.398 Sum_probs=80.8
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
+|+|.|++|++|+..|..|.+||||++++++. ....+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 47999999999999998899999999999722 22357888889999999999999987666779999999999998999
Q ss_pred eeEEEEEECcccC
Q 009664 343 LIGCAQVRLCELE 355 (529)
Q Consensus 343 ~lG~~~i~l~~l~ 355 (529)
+||++.+++++..
T Consensus 80 ~iG~~~i~l~~~~ 92 (124)
T cd04037 80 LIGETVIDLEDRF 92 (124)
T ss_pred eeEEEEEeecccc
Confidence 9999999998754
No 95
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.65 E-value=2.4e-16 Score=136.93 Aligned_cols=111 Identities=23% Similarity=0.386 Sum_probs=93.7
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v 332 (529)
+....+.|.|+|++|+||+..+ .+.+||||++++.+... .+++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3456789999999999999988 78899999999986533 36789999999999999999999853 3446899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++..+++++||++.++......+...++|..+..
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999998999999999999766666666778877754
No 96
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.64 E-value=2.2e-15 Score=130.70 Aligned_cols=111 Identities=27% Similarity=0.477 Sum_probs=89.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+.+..|.|+|+|++|++|+..|..|.+||||++++.+... ++++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 3456799999999999999999889999999999864322 457899999999999999999998532 344799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++..+++++||++.+....... ...++|..+..
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999998999999999866533222 23467877754
No 97
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.64 E-value=1.3e-15 Score=129.60 Aligned_cols=100 Identities=26% Similarity=0.436 Sum_probs=86.7
Q ss_pred EEEecCCCccCCCCCCCcEEEEEEecCC----CCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC----CC
Q 009664 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQ 339 (529)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~----~~ 339 (529)
.++|++|+..+..|.+||||++++.+.. ...++|+++++++||+|||+|.|.+.....+.|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 3789999999989999999999998543 125899999999999999999998765455689999999997 78
Q ss_pred CCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 340 SSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
++++||++.+++.++..+.....|+.|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999999999998877788888883
No 98
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.63 E-value=1.4e-15 Score=130.55 Aligned_cols=98 Identities=15% Similarity=0.342 Sum_probs=82.2
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeec-----CCCCEEEEEEEECCCCCC-CeeEEEEEe
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVED-----GLHDMLIAEVWDHDTFGK-DYMGRCILT 490 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-----~~~~~L~i~V~D~~~~~~-d~lG~~~i~ 490 (529)
+..+.++||+++++ +..++||++++++.||+|||.|+|.+++ +....|.++|||++.+++ ++||++.++
T Consensus 15 d~~g~~dpYv~v~l-----~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~ 89 (126)
T cd08682 15 GKSGTNDAYVIIQL-----GKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIP 89 (126)
T ss_pred CCCcCCCceEEEEE-----CCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEE
Confidence 44567889999985 4567899999999999999999999976 357789999999998875 899999999
Q ss_pred ccccc--ccceeeeEEEcCCC------CccEEEEEEE
Q 009664 491 LTRVI--LEGEYTDCFELDGT------KSGKLKLHLK 519 (529)
Q Consensus 491 L~~l~--~~~~~~~w~~L~~~------~~G~i~l~~~ 519 (529)
|+++. .+....+||+|.+. ..|+|+|+++
T Consensus 90 l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 90 LNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred HHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99987 34456899999752 4699999874
No 99
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.63 E-value=4.2e-15 Score=125.86 Aligned_cols=114 Identities=31% Similarity=0.512 Sum_probs=89.3
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC--CCEEEEEEEECCCCCCC
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~l~i~v~d~~~~~~d 341 (529)
|+|+|++|++|+.. |.+||||+++++ +.+.++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999996 224578999988 99999999999986632 34688888998766566
Q ss_pred ceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
..+|. +++..+..+...+.|++|.+.. ......|+|++++.|
T Consensus 76 ~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEEEEC
Confidence 66665 4555555577789999997542 235678999999876
No 100
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.63 E-value=2.4e-15 Score=130.03 Aligned_cols=106 Identities=34% Similarity=0.570 Sum_probs=92.8
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC-CCCEEEEEEEECCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEGI 338 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~l~i~v~d~~~~ 338 (529)
|.|+|+|++|++|+..+..+.+||||++.+.+.+ ...++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 8999999999999998888899999999997432 3578999999999999999999998654 346899999999988
Q ss_pred CCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 339 QSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
+++++||++.++++++... ..+.|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999998754 6789999964
No 101
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.63 E-value=2.8e-15 Score=128.08 Aligned_cols=107 Identities=24% Similarity=0.404 Sum_probs=90.6
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEec---CCCCEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRI 332 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~l~i~v 332 (529)
....+.|+|+|++|++|++.+..+.+||||++++.+.. ....+|++++++.||.|||+|.|.... ...+.+.|+|
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 35568999999999999998888899999999986433 347899999999999999999986322 2346899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEE
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLK 365 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 365 (529)
||++.. .+++||++.++++++..+..++.|+.
T Consensus 91 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 91 LDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 999988 89999999999999998877777654
No 102
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-16 Score=153.50 Aligned_cols=108 Identities=32% Similarity=0.577 Sum_probs=94.8
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC-CCCEEEEEEEECC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~l~i~v~d~~ 336 (529)
....|+|+|.+|+||.++|.+|.||||+++.+-|+++ .+++|++++.++||+|||+|.|.+... .++.|.|+|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 3468899999999999999999999999999987554 368999999999999999999998643 3568999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
+.+++||+|..++.+++|...+ .+.||.|..
T Consensus 258 rTsRNDFMGslSFgisEl~K~p-~~GWyKlLs 288 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAP-VDGWYKLLS 288 (683)
T ss_pred ccccccccceecccHHHHhhcc-hhhHHHHhh
Confidence 9999999999999999987654 568988864
No 103
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.63 E-value=6.6e-15 Score=121.49 Aligned_cols=96 Identities=26% Similarity=0.467 Sum_probs=76.1
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEEC------
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD------ 335 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~------ 335 (529)
|.|+|.+|+||. +.+||||++++.+.+ ....+|+++++|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 679999999995 569999999997543 246899999999999999999999964 56999999998
Q ss_pred -CCCCCCceeEEEEEECcc--cCCCceeeEEEEc
Q 009664 336 -EGIQSSELIGCAQVRLCE--LEPGKVKDVWLKL 366 (529)
Q Consensus 336 -~~~~~d~~lG~~~i~l~~--l~~~~~~~~~~~L 366 (529)
|..+.|+++|++.+.|+. +.....+...+.|
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 456789999888888753 3443334443443
No 104
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.62 E-value=3e-15 Score=127.57 Aligned_cols=96 Identities=28% Similarity=0.481 Sum_probs=85.8
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccce
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGE 499 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~ 499 (529)
+.++||+.+++ +.+++||++++++.||.|||.|+|.+.+.....|.|+|||++..++++||++.++|+++..++.
T Consensus 26 g~~dPyv~v~~-----~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~ 100 (121)
T cd08391 26 GKSDPYVIVRV-----GAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGF 100 (121)
T ss_pred CCcCCEEEEEE-----CCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCc
Confidence 56789998885 3478999999999999999999999987677899999999998755899999999999988777
Q ss_pred eeeEEEcCCCCccEEEEEEEE
Q 009664 500 YTDCFELDGTKSGKLKLHLKW 520 (529)
Q Consensus 500 ~~~w~~L~~~~~G~i~l~~~~ 520 (529)
..+||+|.+...|+|+|+++|
T Consensus 101 ~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 101 IDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred cceEEECcCCCCceEEEEEeC
Confidence 799999999888999999988
No 105
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.62 E-value=2.5e-15 Score=127.55 Aligned_cols=100 Identities=19% Similarity=0.363 Sum_probs=85.9
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG 498 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~ 498 (529)
.+.++||+++++.. ....++||++++++.||+|||.|+|.+.....+.|.|+|||++..++++||++.++++++..+.
T Consensus 18 ~~~~Dpyv~v~~~~--~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~ 95 (119)
T cd04036 18 LSTPDCYVELWLPT--ASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGE 95 (119)
T ss_pred CCCCCcEEEEEEcC--CCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCC
Confidence 45778999888522 2345789999999999999999999997666678999999999885589999999999998877
Q ss_pred eeeeEEEcCCCCccEEEEEEEE
Q 009664 499 EYTDCFELDGTKSGKLKLHLKW 520 (529)
Q Consensus 499 ~~~~w~~L~~~~~G~i~l~~~~ 520 (529)
....||+|.+.++|++++++..
T Consensus 96 ~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 96 KVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEECCCCCCceEEEEEEe
Confidence 8899999999889999998864
No 106
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.61 E-value=9.6e-16 Score=133.19 Aligned_cols=108 Identities=28% Similarity=0.433 Sum_probs=93.7
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecCC--CCEEEEEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD 334 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~l~i~v~d 334 (529)
...+.|.|+|++|++|+..+..+.+||||++++.+... ..++|++++++.||.|||+|.|.+.... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 45689999999999999988888999999999985433 3579999999999999999999986542 5689999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
++..+++++||++.+++++ .+...++|++|..
T Consensus 91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 9988899999999999998 5666788999864
No 107
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.61 E-value=6.2e-15 Score=125.57 Aligned_cols=101 Identities=20% Similarity=0.324 Sum_probs=86.2
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.++||+++.+ .+...+||++++++.||.|||.|.|.+.++ ...|.|+|||++..++ ++||++.++|+++.
T Consensus 16 d~~g~~Dpyv~v~~----~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~ 90 (121)
T cd04042 16 DRGGTSDPYVKFKY----GGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLE 90 (121)
T ss_pred CCCCCCCCeEEEEE----CCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcceEEEEEEHHHcC
Confidence 34467889999875 234678999999999999999999999764 5789999999999865 89999999999998
Q ss_pred ccceeeeEEEcCCC----CccEEEEEEEEEe
Q 009664 496 LEGEYTDCFELDGT----KSGKLKLHLKWMP 522 (529)
Q Consensus 496 ~~~~~~~w~~L~~~----~~G~i~l~~~~~~ 522 (529)
.+...+.|++|.+. ..|+|++.+.++|
T Consensus 91 ~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 91 LNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 88788999999754 3599999999876
No 108
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1e-16 Score=150.24 Aligned_cols=231 Identities=23% Similarity=0.307 Sum_probs=170.9
Q ss_pred ccccccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEE--EecC-CCCE
Q 009664 253 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI--VEDE-STQH 327 (529)
Q Consensus 253 ~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~--v~~~-~~~~ 327 (529)
++.++......+..++.+|++|.+++.++..|||+++.+.+.-++ ..+|++..+++||.|+|+-.+. ..+. ....
T Consensus 84 ~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~ 163 (362)
T KOG1013|consen 84 FELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKV 163 (362)
T ss_pred hhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhh
Confidence 344556677889999999999999999999999999999865443 4788899999999999875443 3332 2346
Q ss_pred EEEEEEECCCCCCCceeEEEEEECcccCCCceee--EEEEccccc-cc-ccCCccccEEEEEEEEEEcccCCCCCCCCCC
Q 009664 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD--VWLKLVKDL-DV-QRDTKYRGQVHLELLYCPFGMENVFTNPFAP 403 (529)
Q Consensus 328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~--~~~~L~~~~-~~-~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~ 403 (529)
+++.|.|.+.+..++++|+..+++..+.+.+... .|+.-.-.. .. ..+...+|+|.+++.|-... .
T Consensus 164 ~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~----------~ 233 (362)
T KOG1013|consen 164 LRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTT----------P 233 (362)
T ss_pred hheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCC----------C
Confidence 7899999999999999999999999887655432 232211110 01 11236789999999986432 1
Q ss_pred CCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEee--cCCCCEEEEEEEECCCC
Q 009664 404 NFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTF 479 (529)
Q Consensus 404 ~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~~L~i~V~D~~~~ 479 (529)
.+-++.++ .+..+++++.+++|++.+.........++||.+.++|.||+||+.|.|.+. +....++.|.|||++..
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G 313 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIG 313 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCC
Confidence 12223333 223567889999999999775555567889999999999999999999986 34677899999999987
Q ss_pred CC-CeeEEEEEeccc
Q 009664 480 GK-DYMGRCILTLTR 493 (529)
Q Consensus 480 ~~-d~lG~~~i~L~~ 493 (529)
+. +.+|-+...+..
T Consensus 314 ~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 314 KSNDSIGGSMLGGYR 328 (362)
T ss_pred cCccCCCcccccccc
Confidence 44 888877666544
No 109
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.60 E-value=2.5e-14 Score=123.15 Aligned_cols=119 Identities=25% Similarity=0.404 Sum_probs=95.9
Q ss_pred EEEEEEEEecCCCccC--CCCCCCcEEEEEEecCC---CCeEeccccCCCC-CCeeccEEEEEEecCCCCEEEEEEEECC
Q 009664 263 TLEVKLVQAKGLTNKD--LIGKSDPYAVLFVRPLP---EKTKKSKTINNDL-NPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~-nP~Wne~f~~~v~~~~~~~l~i~v~d~~ 336 (529)
.|+|+|++|++|+..+ ..+.+||||++++...+ ...++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 5899999999999887 57889999999996432 3568999887765 9999999999998766568999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
.. ++++||++.++++++..+. .|++|.... ......|.|.+.+..
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~---~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK---GEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCCC---CCCCcceeEEEEEEE
Confidence 87 8999999999999996653 577775321 123456888887764
No 110
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.60 E-value=6.5e-15 Score=124.49 Aligned_cols=97 Identities=29% Similarity=0.453 Sum_probs=85.6
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+.++||+++++ +..++||+++++|.||.|||.|+|.+.+.....|.|+|||++..++ ++||++.++|+++..+
T Consensus 18 ~~~~dPyv~v~~-----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~ 92 (116)
T cd08376 18 NGLSDPYVKFRL-----GNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPRE 92 (116)
T ss_pred CCCCCcEEEEEE-----CCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCC
Confidence 457789999885 4567899999999999999999999987767899999999998865 8999999999999887
Q ss_pred ceeeeEEEcCCCCccEEEEEEEEE
Q 009664 498 GEYTDCFELDGTKSGKLKLHLKWM 521 (529)
Q Consensus 498 ~~~~~w~~L~~~~~G~i~l~~~~~ 521 (529)
.....||+|++. .|+|++.+.|.
T Consensus 93 ~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 93 QTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred CceEEEEEccCC-CcEEEEEEEec
Confidence 778999999976 59999998774
No 111
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.60 E-value=3.5e-15 Score=128.71 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=81.6
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhh--hhcC--CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKV--LTNG--EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~--~~~~--~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
.|+|.+++.|.|.... +.+..+++. ...+ ..+.+|+|+++++........++||++++++.||+||
T Consensus 1 ~Gel~~sL~Y~~~~~~----------L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfN 70 (138)
T cd08407 1 TGEVLLSISYLPAANR----------LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWN 70 (138)
T ss_pred CCEEEEEEEEeCCCCe----------EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccc
Confidence 4999999999986532 333333221 1122 1234789999998877656678899999999999999
Q ss_pred ceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 455 QTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 455 e~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
|.|.|.++.. .+..|.|+|||++.+++ ++||++.+++..
T Consensus 71 E~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 71 EMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred cEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 9999999743 56789999999999876 899999999975
No 112
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.59 E-value=9.4e-15 Score=123.97 Aligned_cols=94 Identities=20% Similarity=0.321 Sum_probs=79.9
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCC-------CCCeeEEEEE
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-------GKDYMGRCIL 489 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~-------~~d~lG~~~i 489 (529)
+..+.++||+.+++ +.++.||++++++.||+|||+|.|.+.++. ..|.|+|||++.. ++++||++.+
T Consensus 19 d~~g~sDPYv~i~~-----g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i 92 (126)
T cd08379 19 DGRGSTDAYCVAKY-----GPKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHWKEAVQPDVLIGKVRI 92 (126)
T ss_pred ccCCCCCeeEEEEE-----CCEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCccccccCCCCceEEEEEE
Confidence 44578899998884 667889999999999999999999998744 5899999999886 4589999999
Q ss_pred ecccccccceeeeEEEcCC------CCccEEEE
Q 009664 490 TLTRVILEGEYTDCFELDG------TKSGKLKL 516 (529)
Q Consensus 490 ~L~~l~~~~~~~~w~~L~~------~~~G~i~l 516 (529)
+|+++..+.....||+|.+ .+.|+|++
T Consensus 93 ~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 93 RLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999988888899999983 24577664
No 113
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.59 E-value=3.1e-15 Score=126.85 Aligned_cols=116 Identities=13% Similarity=0.142 Sum_probs=88.3
Q ss_pred EEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccC-CeeEeeecccCCCCCccCceE
Q 009664 381 QVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKD-ASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 381 ~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~kT~v~~~t~nP~wne~f 457 (529)
+|++++.|.+.... +.+..++ .+...+..+.+++|++++++..... ..++||++++++.||+|||+|
T Consensus 2 ~i~~sL~Y~~~~~~----------L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F 71 (124)
T cd08680 2 QVQIGLRYDSGDSS----------LVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVF 71 (124)
T ss_pred eEEEEEEECCCCCE----------EEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEE
Confidence 57888888765422 2222222 2222244567889999999887654 458899999999999999999
Q ss_pred EEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc-eeeeEEEc
Q 009664 458 DFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG-EYTDCFEL 506 (529)
Q Consensus 458 ~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~-~~~~w~~L 506 (529)
+|.++. ..+..|.++|||++..++ ++||++.|+|+++.... ...+||+|
T Consensus 72 ~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 72 RVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999963 367899999999998766 89999999999995554 46889986
No 114
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.59 E-value=3.8e-15 Score=125.95 Aligned_cols=88 Identities=16% Similarity=0.289 Sum_probs=74.9
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-CCCEEEEEEEECCCCC--CCeeEEEEEeccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTFG--KDYMGRCILTLTRVI 495 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~~~~~--~d~lG~~~i~L~~l~ 495 (529)
.+.++||+++++........++||++++++.||+|||+|.|.+... ....|.|+|||++..+ +++||++.|+|.++.
T Consensus 29 ~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 29 SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence 4678899999988776666778999999999999999999998643 3457999999998764 379999999999998
Q ss_pred ccceeeeEEEc
Q 009664 496 LEGEYTDCFEL 506 (529)
Q Consensus 496 ~~~~~~~w~~L 506 (529)
..+..++||.|
T Consensus 109 ~~~~~~~Wy~l 119 (119)
T cd08685 109 NQKEISGWYYL 119 (119)
T ss_pred cCccccceEeC
Confidence 66667999986
No 115
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.59 E-value=6.5e-15 Score=126.68 Aligned_cols=120 Identities=18% Similarity=0.311 Sum_probs=91.8
Q ss_pred cccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc
Q 009664 378 YRGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455 (529)
Q Consensus 378 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne 455 (529)
+.|+|.+++.|.+... .+.+..+ +.+...+..+.+++|+++++........++||++++++.||+|||
T Consensus 1 ~~G~l~~~l~y~~~~~----------~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne 70 (127)
T cd04030 1 PLGRIQLTIRYSSQRQ----------KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDE 70 (127)
T ss_pred CCeEEEEEEEEeCCCC----------EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECe
Confidence 4699999999986432 1222222 222223345678899999987655556789999999999999999
Q ss_pred eEEEEeec--CCCCEEEEEEEECCCC--CC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 456 TFDFVVED--GLHDMLIAEVWDHDTF--GK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 456 ~f~f~v~~--~~~~~L~i~V~D~~~~--~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
.|.|.+.. .....|.+.|||++.+ ++ ++||++.++|+++.......+||+|.
T Consensus 71 ~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 71 TFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 99999863 3457899999999875 34 89999999999997777779999984
No 116
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.59 E-value=6.1e-15 Score=125.07 Aligned_cols=98 Identities=20% Similarity=0.351 Sum_probs=82.5
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccC-CCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~ 496 (529)
..+.++||+++.+ +..++||+++++ +.||+|||.|.|.+..+..+.|.|+|||++..++++||++.++++++..
T Consensus 18 ~~~~~dpyv~v~~-----~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~ 92 (118)
T cd08681 18 KLDKQDPYCVLRI-----GGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALK 92 (118)
T ss_pred cCCCCCceEEEEE-----CCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhh
Confidence 3456789999875 336788998765 7899999999999987667899999999998777899999999999877
Q ss_pred cceeeeEEEcCCC--CccEEEEEEEE
Q 009664 497 EGEYTDCFELDGT--KSGKLKLHLKW 520 (529)
Q Consensus 497 ~~~~~~w~~L~~~--~~G~i~l~~~~ 520 (529)
.....+||+|.+. ..|+|+|+++|
T Consensus 93 ~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 93 EGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred cCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 6667999999853 57999999976
No 117
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.58 E-value=6.8e-15 Score=125.90 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=89.9
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|++++.|.+... .+.+..+ +.+...+..+.++||+++++... +..++||++++++.||+|||.
T Consensus 2 ~G~l~~sl~y~~~~~----------~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~~P~wne~ 69 (124)
T cd08387 2 RGELHFSLEYDKDMG----------ILNVKLIQARNLQPRDFSGTADPYCKVRLLPD--RSNTKQSKIHKKTLNPEFDES 69 (124)
T ss_pred CCEEEEEEEECCCCC----------EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC--CCCcEeCceEcCCCCCCcccE
Confidence 699999999976431 1222222 22223344567889999987433 345789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
|.|.++.. ....|.|+|||++.+++ ++||++.++|+++...+..+.||+|+
T Consensus 70 f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 70 FVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 99998643 45689999999998865 89999999999998777889999986
No 118
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.58 E-value=7.6e-15 Score=130.94 Aligned_cols=131 Identities=24% Similarity=0.369 Sum_probs=97.1
Q ss_pred ccEEEEEEEEEEcccCCCCC--CCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 379 RGQVHLELLYCPFGMENVFT--NPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~--~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
+|+|.+++.|.|........ ......+.+..++ .+...+..+.++||+++++.....+..++||++++++.||.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 58999999999866432211 1112233333332 2223344567899999998766666678999999999999999
Q ss_pred ceEEEEee---cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 455 QTFDFVVE---DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 455 e~f~f~v~---~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
|.|.|.+. +..+..|.|+|||++.+++ ++||++.++++++...+....||+|.+.
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 99999853 2345689999999999875 8999999999999877777889988763
No 119
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.58 E-value=1.5e-14 Score=125.25 Aligned_cols=98 Identities=26% Similarity=0.486 Sum_probs=85.7
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
..+.++||+++++ +..++||++++++.||.|||.|+|.+.++..+.|.|+|||++.+++ ++||++.++|+++..
T Consensus 32 ~~g~~DPYv~v~~-----~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 32 SNGKSDPYCEVSM-----GSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCcCcEEEEEE-----CCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence 3457889998885 4567999999999999999999999988777899999999998875 899999999999986
Q ss_pred -----cceeeeEEEcCCCCccEEEEEEEE
Q 009664 497 -----EGEYTDCFELDGTKSGKLKLHLKW 520 (529)
Q Consensus 497 -----~~~~~~w~~L~~~~~G~i~l~~~~ 520 (529)
...+.+|.+|.+...|+|+|++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 107 ETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred ccccCCCcEEEEeccccccceeEEEEEEe
Confidence 334578999998889999999876
No 120
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.57 E-value=1.3e-14 Score=125.02 Aligned_cols=97 Identities=26% Similarity=0.497 Sum_probs=83.2
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc-
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL- 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~- 496 (529)
.+.++||+.+++ +..++||++++++.||.|||.|+|.+.++....|.|+|||++..++ ++||++.++|+++..
T Consensus 21 ~~~~dPyv~v~~-----~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~ 95 (128)
T cd04024 21 KGKSDPYAILSV-----GAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFAD 95 (128)
T ss_pred CCCcCCeEEEEE-----CCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcc
Confidence 456789998774 4567899999999999999999999987667899999999998865 899999999999874
Q ss_pred --cceeeeEEEcCCC-------CccEEEEEEEE
Q 009664 497 --EGEYTDCFELDGT-------KSGKLKLHLKW 520 (529)
Q Consensus 497 --~~~~~~w~~L~~~-------~~G~i~l~~~~ 520 (529)
.+...+||+|++. ..|+|+|++.|
T Consensus 96 ~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 96 GKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cccCccceeEEccCcccCccccccceEEEEEEC
Confidence 2335899999865 58999999998
No 121
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.57 E-value=1.7e-14 Score=122.40 Aligned_cols=95 Identities=22% Similarity=0.369 Sum_probs=81.1
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc--
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG-- 498 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~-- 498 (529)
.++||+++++ +..+.||++++++.||+|||.|+|.+.++....|.++|||++..++++||++.++|+++..+.
T Consensus 16 ~~Dpyv~v~l-----~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~ 90 (121)
T cd08378 16 SNDPVVEVKL-----GNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPP 90 (121)
T ss_pred cCCCEEEEEE-----CCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCC
Confidence 5679999885 335789999999999999999999998777789999999999876699999999999987543
Q ss_pred ---eeeeEEEcCCCC----ccEEEEEEEE
Q 009664 499 ---EYTDCFELDGTK----SGKLKLHLKW 520 (529)
Q Consensus 499 ---~~~~w~~L~~~~----~G~i~l~~~~ 520 (529)
...+||+|.+.. .|+|+|.++|
T Consensus 91 ~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 91 DSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred CCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 247999998643 6999999987
No 122
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.57 E-value=1.6e-14 Score=127.10 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=85.2
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccC-CCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
+..+.++||+++.+ +.+++||+++.+ +.||+|||.|+|.+.++..+.|.|+|+|++..++ ++||++.++|+++
T Consensus 16 d~~g~sDPYV~v~l-----~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l 90 (150)
T cd04019 16 DKNRVPEVFVKAQL-----GNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDI 90 (150)
T ss_pred CCCCCCCeEEEEEE-----CCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHC
Confidence 44568889999886 447889999876 6999999999999987767899999999998754 8999999999998
Q ss_pred ccc----ceeeeEEEcCCCC-----------ccEEEEEEEEEeCC
Q 009664 495 ILE----GEYTDCFELDGTK-----------SGKLKLHLKWMPQP 524 (529)
Q Consensus 495 ~~~----~~~~~w~~L~~~~-----------~G~i~l~~~~~~~~ 524 (529)
... ....+||+|.+.. .|+|+|++.+.+..
T Consensus 91 ~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 91 ERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred cccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 653 2358999998643 39999999988654
No 123
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.56 E-value=1.4e-14 Score=123.91 Aligned_cols=117 Identities=19% Similarity=0.364 Sum_probs=88.3
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcC-CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNG-EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
|+|++++.|.+... .+.+..++ .+...+ ..+..+||+++++........++||++++++.||.|||+
T Consensus 1 G~i~~~l~y~~~~~----------~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~ 70 (123)
T cd08521 1 GEIEFSLSYNYKTG----------SLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNET 70 (123)
T ss_pred CeEEEEEEEeCCCC----------EEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccce
Confidence 78888888865432 22222222 122222 345788999999865544446789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEc
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 506 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L 506 (529)
|.|.+... ....|.|+|||++..++ ++||++.++|+++........||+|
T Consensus 71 f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 71 LKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99998643 45689999999998876 8999999999999777777999987
No 124
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.56 E-value=1.2e-14 Score=168.02 Aligned_cols=121 Identities=14% Similarity=0.294 Sum_probs=104.3
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC-CCEEEEEEEECCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG 337 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-~~~l~i~v~d~~~ 337 (529)
.-.|.|+|+|++|+||. +..|.+||||++.++. +++.||++++++.||+|||.|+|.+.++. ++.+.++|||+|.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 35699999999999998 4468999999999982 44679999999999999999999998875 4679999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccE---EEEEEEEEE
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ---VHLELLYCP 390 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~---i~l~l~~~p 390 (529)
+++ +.+|.+++++.++..+.....||+|.+ +++..|+ |++++.|.+
T Consensus 2053 f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cCC-CCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEEEEecC
Confidence 854 589999999999998888999999963 3456677 999999864
No 125
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.56 E-value=1.5e-14 Score=123.76 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=89.4
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|.+++.|.+... .+.+..+ +.+...+..+.++||+++++... ..+++||++++++.||+|||.
T Consensus 2 ~G~l~~~l~y~~~~~----------~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~ 69 (124)
T cd08385 2 LGKLQFSLDYDFQSN----------QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVFNET 69 (124)
T ss_pred ccEEEEEEEEeCCCC----------EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC--CCCceecccCcCCCCCceeee
Confidence 589999999975432 1222222 22222344567889999997543 335789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
|+|.+... ....|.|+|||++.+++ ++||++.++|+++......++|++|+
T Consensus 70 f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 70 FTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99998642 45689999999998866 89999999999997777779999986
No 126
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.56 E-value=1.3e-14 Score=124.37 Aligned_cols=118 Identities=23% Similarity=0.435 Sum_probs=87.2
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|.+++.|.+... .+.+..+ +.+...+..+.++||+++++........++||++++++.||+|||.
T Consensus 2 ~G~l~~~l~~~~~~~----------~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~ 71 (125)
T cd04031 2 TGRIQIQLWYDKVTS----------QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQT 71 (125)
T ss_pred cEEEEEEEEEeCCCC----------EEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccE
Confidence 589999999986432 1222222 2222234456788999999865544456789999999999999999
Q ss_pred EEEEeec---CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 457 FDFVVED---GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 457 f~f~v~~---~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
|+|.+.. .....|.|+|||++..++ ++||++.++|++.. ......||+|+
T Consensus 72 f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 72 FEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred EEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 9998632 246789999999998766 89999999999943 33347899985
No 127
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.55 E-value=3.1e-14 Score=119.06 Aligned_cols=92 Identities=26% Similarity=0.435 Sum_probs=77.1
Q ss_pred EEEEecCCCccCCCCCCCcEEEEEEecCC---CCeEeccccCCCCCCeeccEEEEEEecCC----CCEEEEEEEECCCCC
Q 009664 267 KLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGIQ 339 (529)
Q Consensus 267 ~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~nP~Wne~f~~~v~~~~----~~~l~i~v~d~~~~~ 339 (529)
-.++|++|+..|..|.+||||++++.+.. ...++|+++++++||+|| +|.|...+.. .+.|.|+|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 34689999999999999999999987432 235899999999999999 6888764332 568999999999999
Q ss_pred CCceeEEEEEECcccCCCce
Q 009664 340 SSELIGCAQVRLCELEPGKV 359 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~ 359 (529)
+|++||++.++++++..+..
T Consensus 84 ~d~~iG~~~~~l~~l~~~~~ 103 (110)
T cd04047 84 KHDLIGEFETTLDELLKSSP 103 (110)
T ss_pred CCcEEEEEEEEHHHHhcCCC
Confidence 99999999999999875443
No 128
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.55 E-value=6.5e-14 Score=120.12 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=86.3
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
..+.++||+.+++ ....+++||+++++|.||+|||.|.|.+.. ....|.|+|||++..++ ++||++.++++++..
T Consensus 14 ~~g~~dpyv~v~~---~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~ 89 (126)
T cd08678 14 AAGSSNPYCVLEM---DEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFLGLAIVPFDELRK 89 (126)
T ss_pred CCCCcCCEEEEEE---CCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceEEEEEEeHHHhcc
Confidence 3457889999885 222456899999999999999999999864 46789999999999875 899999999999998
Q ss_pred cceeeeEEEcCCC------CccEEEEEEEEEeC
Q 009664 497 EGEYTDCFELDGT------KSGKLKLHLKWMPQ 523 (529)
Q Consensus 497 ~~~~~~w~~L~~~------~~G~i~l~~~~~~~ 523 (529)
.+...+||+|.+. ..|+|++++.|.+.
T Consensus 90 ~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 90 NPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred CCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 8777899999843 58999999999864
No 129
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.55 E-value=3.8e-14 Score=120.33 Aligned_cols=96 Identities=17% Similarity=0.271 Sum_probs=81.1
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
+.++||+.+++ .+...+||+++++|.||.|||.|+|.+.+. ...|.|.|||++.+++ ++||.+.++++++....
T Consensus 20 g~sDpYv~v~l----~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~ 94 (121)
T cd08401 20 KMRDCYCTVNL----DQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYY 94 (121)
T ss_pred CCcCcEEEEEE----CCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCC
Confidence 46789999876 233468999999999999999999999853 4689999999999866 89999999999998777
Q ss_pred eeeeEEEcCCC-----CccEEEEEEEE
Q 009664 499 EYTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 499 ~~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
..+.||+|+.. ..|+|+|++.+
T Consensus 95 ~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 95 GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 77999999853 37999998753
No 130
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.55 E-value=3.1e-14 Score=119.71 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=74.9
Q ss_pred ccCCCceEEEEEEE--ccCCeeEeeecccCCCCCccCceEEEEeec---CCCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 420 ALKSGANGTEAIEL--EKDASQKRREVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 420 ~~~~~~l~v~~~~~--~~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
|.++||++|+++.. ....+++||+++.+|.||+|||+|+|.+.+ +....|.|.|||++..++ ++||++.++|++
T Consensus 18 g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~ 97 (120)
T cd08395 18 GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRD 97 (120)
T ss_pred CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHH
Confidence 67889999998642 223346799999999999999999999973 345679999999987765 799999999999
Q ss_pred ccccceeeeEEEcCC
Q 009664 494 VILEGEYTDCFELDG 508 (529)
Q Consensus 494 l~~~~~~~~w~~L~~ 508 (529)
+..++....|++|..
T Consensus 98 ~~~~~~~~~w~~L~~ 112 (120)
T cd08395 98 IAQAGSCACWLPLGR 112 (120)
T ss_pred CcCCCcEEEEEECcC
Confidence 998888899999975
No 131
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.54 E-value=5.5e-15 Score=127.59 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=88.5
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|.++++|.|.... +.+..++ .+...+..+.+++|++++++.......++||++++++.||+|||+|
T Consensus 2 G~i~~sL~Y~~~~~~----------L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f 71 (136)
T cd08406 2 GEILLSLSYLPTAER----------LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAM 71 (136)
T ss_pred cEEEEEEEEcCCCCE----------EEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeE
Confidence 899999999876432 2332222 2223345677899999999876555567899999999999999999
Q ss_pred EEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 458 DFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 458 ~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
.|.++. ..+..|.|+|||++..++ ++||++.|+.... ....++|..+..+
T Consensus 72 ~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~ml~~ 124 (136)
T cd08406 72 IFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQMLAS 124 (136)
T ss_pred EEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHHHHC
Confidence 999964 367889999999998876 8999999987642 3334566666544
No 132
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.54 E-value=7.3e-14 Score=119.62 Aligned_cols=99 Identities=13% Similarity=0.218 Sum_probs=81.4
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
+.++||+++.+ .+.++.||+++ ++.||.|||.|.|.+..+....++|.|||++..++ ++||++.++|+++...+
T Consensus 20 ~~~DPYv~v~l----~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~ 94 (126)
T cd08400 20 HVPHPYCVISL----NEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQ 94 (126)
T ss_pred CCCCeeEEEEE----CCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCC
Confidence 35689999886 23345688874 58999999999998765555689999999998876 79999999999998877
Q ss_pred eeeeEEEcCCC------CccEEEEEEEEEeC
Q 009664 499 EYTDCFELDGT------KSGKLKLHLKWMPQ 523 (529)
Q Consensus 499 ~~~~w~~L~~~------~~G~i~l~~~~~~~ 523 (529)
..+.||+|.+. ..|+|+|++.|.+.
T Consensus 95 ~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 95 ETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred cccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 78999999753 34999999999874
No 133
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.54 E-value=3.4e-14 Score=120.67 Aligned_cols=117 Identities=9% Similarity=0.123 Sum_probs=84.1
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCC-CCccCce
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCL-NPIWNQT 456 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~-nP~wne~ 456 (529)
.+|.++|+|.|.... +.+..+++ +.....++..++|++|.+...+....++||+++++|. ||+|||+
T Consensus 1 ~el~~sL~Y~p~~~r----------LtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEs 70 (135)
T cd08692 1 AELQLGTCFQAVNSR----------IQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGET 70 (135)
T ss_pred CeEEEEeeecCcCCe----------EEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecce
Confidence 378999999987643 33333222 1112234456799999998887777899999999995 6999999
Q ss_pred EEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 457 FDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 457 f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
|.|.|+.. .+..|.|+|||++..++ ++||++.++.++.. ....++|.+..
T Consensus 71 F~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 71 MIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccCC-chhhhhHHHHH
Confidence 99999754 34578999999988765 89999999998632 12234554443
No 134
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.53 E-value=2.8e-14 Score=121.72 Aligned_cols=117 Identities=21% Similarity=0.323 Sum_probs=89.1
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|++++.|.+... .+.++.+++ +...+..+..++|+++.++.. ..+++||+++++ .||+|||+
T Consensus 2 ~G~l~~sl~Y~~~~~----------~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~--~~~~~kTkv~~~-~nP~fnE~ 68 (124)
T cd08389 2 CGDLDVAFEYDPSAR----------KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS--KKQRAKTKVQRG-PNPVFNET 68 (124)
T ss_pred CEEEEEEEEECCCCC----------EEEEEEEEecCCCchhcCCCCCcEEEEEEccC--CcceeecccccC-CCCcccCE
Confidence 599999999986542 233333322 222334566778998776554 346789999887 99999999
Q ss_pred EEEE-ee--cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCC
Q 009664 457 FDFV-VE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG 508 (529)
Q Consensus 457 f~f~-v~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~ 508 (529)
|.|. ++ +..+..|.++|||++.+++ ++||++.++|+++...+....||+|++
T Consensus 69 F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 69 FTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred EEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 9998 64 3357789999999998875 899999999999977777899999973
No 135
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.53 E-value=3.9e-15 Score=144.01 Aligned_cols=128 Identities=22% Similarity=0.373 Sum_probs=103.6
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
....+|+|.+++...... ..+.+...+++...+.+|.++||+++.+........++||++++.++||+||
T Consensus 164 htE~RGrl~l~~~~~~~~----------l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wN 233 (683)
T KOG0696|consen 164 HTERRGRLYLEAHIKRDV----------LTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWN 233 (683)
T ss_pred chhhcceEEEEEEecCce----------EEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcccc
Confidence 456789999988764110 1112233445667889999999999999998888899999999999999999
Q ss_pred ceEEEEeec-CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCccE
Q 009664 455 QTFDFVVED-GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGK 513 (529)
Q Consensus 455 e~f~f~v~~-~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~ 513 (529)
|+|+|.+.. ..+..|.|+|||+++-+. |+||++++.++++...+ .+.||.|-....|+
T Consensus 234 Etftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 234 ETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE 293 (683)
T ss_pred ceeEEecccccccceeEEEEecccccccccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence 999999853 367789999999998776 99999999999987654 48999998877675
No 136
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.53 E-value=3.7e-14 Score=121.85 Aligned_cols=99 Identities=21% Similarity=0.347 Sum_probs=81.8
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---CCCEEEEEEEECCCCC--CCeeEEEEEecc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTFG--KDYMGRCILTLT 492 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~D~~~~~--~d~lG~~~i~L~ 492 (529)
..+.++||+++++ +.+++||++++++.||+|||.|.|.+.++ ....|.|+|||++.++ +++||++.++++
T Consensus 17 ~~g~~dpyv~v~~-----~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~ 91 (127)
T cd04022 17 GQGSSSAYVELDF-----DGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGT 91 (127)
T ss_pred CCCCcCcEEEEEE-----CCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHH
Confidence 3456789998875 34678999999999999999999999754 2468999999998874 489999999999
Q ss_pred cccc-cceeeeEEEcCCC-----CccEEEEEEEEE
Q 009664 493 RVIL-EGEYTDCFELDGT-----KSGKLKLHLKWM 521 (529)
Q Consensus 493 ~l~~-~~~~~~w~~L~~~-----~~G~i~l~~~~~ 521 (529)
++.. +....+||+|+.. .+|+|+|++.++
T Consensus 92 ~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 92 SFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred HcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9974 3446899999853 589999999875
No 137
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.52 E-value=3.7e-14 Score=123.97 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=75.2
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEee---------------cCCCCEEEEEEEECCCCCC-
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVE---------------DGLHDMLIAEVWDHDTFGK- 481 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~---------------~~~~~~L~i~V~D~~~~~~- 481 (529)
..+.++||++|++........++||+++++|.||+|||.|+|.+. +.....|.|.|||++..++
T Consensus 15 ~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~d 94 (148)
T cd04010 15 KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGD 94 (148)
T ss_pred CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCC
Confidence 356788999999766544446789999999999999999999995 2233579999999998755
Q ss_pred CeeEEEEEeccccccc-ceeeeEEEcCC
Q 009664 482 DYMGRCILTLTRVILE-GEYTDCFELDG 508 (529)
Q Consensus 482 d~lG~~~i~L~~l~~~-~~~~~w~~L~~ 508 (529)
++||++.|+|.++... .....||+|..
T Consensus 95 dfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 95 VFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred ceeEEEEEecccccccCCcCcceeecCC
Confidence 8999999999999876 56689999964
No 138
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.52 E-value=6.4e-14 Score=116.04 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=74.7
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
..+.+++|+++++ +.+++||++++++.||+|||.|+|.+.++..+.|.|+|+|++. +++||++.++|.++...
T Consensus 17 ~~~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~ 89 (105)
T cd04050 17 STKEPSPYVELTV-----GKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKE 89 (105)
T ss_pred cCCCCCcEEEEEE-----CCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhcc
Confidence 3467889998886 3478999999999999999999999998777899999999987 68999999999999876
Q ss_pred c--eeeeEEEcCCCC
Q 009664 498 G--EYTDCFELDGTK 510 (529)
Q Consensus 498 ~--~~~~w~~L~~~~ 510 (529)
. ..++||+|.+++
T Consensus 90 ~~~~~~~w~~L~~~g 104 (105)
T cd04050 90 PDLTLDQPFPLDNSG 104 (105)
T ss_pred ccceeeeeEecCCCC
Confidence 4 469999999753
No 139
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.51 E-value=1.5e-13 Score=120.24 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=87.0
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC--------CCCEEEEEEEECCCC-C-CCeeEEE
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG--------LHDMLIAEVWDHDTF-G-KDYMGRC 487 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--------~~~~L~i~V~D~~~~-~-~d~lG~~ 487 (529)
.++..|+|+++++.....+.+++||+++++|+||+|||.|.|.+... ....|.++|||++.+ + +++||++
T Consensus 21 ~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~ 100 (155)
T cd08690 21 NPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTA 100 (155)
T ss_pred CCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEE
Confidence 45578899999875555677899999999999999999999999643 245799999999986 3 4899999
Q ss_pred EEecccccccceeeeEEEcC-CC--CccEEEEEEEEEe
Q 009664 488 ILTLTRVILEGEYTDCFELD-GT--KSGKLKLHLKWMP 522 (529)
Q Consensus 488 ~i~L~~l~~~~~~~~w~~L~-~~--~~G~i~l~~~~~~ 522 (529)
.++|+.+..+.....|++|. |. ..|++++++.-+.
T Consensus 101 ~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 101 QVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 99999998777778899987 43 3689999888764
No 140
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.50 E-value=1.8e-13 Score=121.59 Aligned_cols=99 Identities=17% Similarity=0.333 Sum_probs=83.1
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
..+.++||+.+.+ .+.+..||++++++.||.|||.|+|.+.+. .+.|.|+|+|++..++++||++.++++++...
T Consensus 54 ~~g~sDPYv~V~l----~~~~~~rT~v~~~~~nP~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g 128 (158)
T cd04015 54 GKITSDPYATVDL----AGARVARTRVIENSENPVWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSG 128 (158)
T ss_pred CCCCcCeEEEEEE----CCeEeeEEEEeCCCCCCccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCC
Confidence 3456789999885 233457999999999999999999998754 46799999999988889999999999999877
Q ss_pred ceeeeEEEcCCC------CccEEEEEEEEE
Q 009664 498 GEYTDCFELDGT------KSGKLKLHLKWM 521 (529)
Q Consensus 498 ~~~~~w~~L~~~------~~G~i~l~~~~~ 521 (529)
...++||+|.+. ..|+|+++++|+
T Consensus 129 ~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 129 EPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 777999999642 358999999884
No 141
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.50 E-value=9.1e-14 Score=120.17 Aligned_cols=123 Identities=21% Similarity=0.410 Sum_probs=92.4
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|++++.|.+. .+.+..+ +.+...+..+..++|+++.+........++||++++++.||.|||+
T Consensus 1 ~g~~~~~~~~~~~------------~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~ 68 (131)
T cd04026 1 RGRIYLKISVKDN------------KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNET 68 (131)
T ss_pred CcEEEEEEEECCC------------EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccce
Confidence 5888888888641 1122211 1222223345678999998754444456789999999999999999
Q ss_pred EEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCccEE
Q 009664 457 FDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL 514 (529)
Q Consensus 457 f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i 514 (529)
|.|.+... ....|.|+|||++..++ ++||++.++|+++... ....||+|.+.+.|+.
T Consensus 69 f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 69 FTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred EEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 99998754 45689999999998766 8999999999999754 5689999999888864
No 142
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.50 E-value=3.4e-13 Score=115.85 Aligned_cols=100 Identities=21% Similarity=0.384 Sum_probs=86.1
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
.+.++||+++++ +..++||++++++.||+|||.|.|.+.++ ....|.|+|||++..++ ++||++.++|+++.
T Consensus 12 ~g~~Dpyv~v~~-----~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~ 86 (127)
T cd08373 12 KGKGDRIAKVTF-----RGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLV 86 (127)
T ss_pred CCCCCCEEEEEE-----CCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcc
Confidence 456789999885 34568999999999999999999999754 56889999999998866 89999999999999
Q ss_pred ccceeeeEEEcCCC----CccEEEEEEEEEeC
Q 009664 496 LEGEYTDCFELDGT----KSGKLKLHLKWMPQ 523 (529)
Q Consensus 496 ~~~~~~~w~~L~~~----~~G~i~l~~~~~~~ 523 (529)
.+.....|++|.+. ..|+|++++.|.|.
T Consensus 87 ~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 87 SEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred cCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 88888999999632 35899999999985
No 143
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.49 E-value=1.6e-13 Score=108.77 Aligned_cols=85 Identities=35% Similarity=0.596 Sum_probs=76.5
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|+|+|++|++|...+..+.+|||+++++.......++|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998544456999999999999999999999877777789999999999888999
Q ss_pred eEEEE
Q 009664 344 IGCAQ 348 (529)
Q Consensus 344 lG~~~ 348 (529)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99973
No 144
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.49 E-value=3.5e-13 Score=116.59 Aligned_cols=95 Identities=19% Similarity=0.388 Sum_probs=80.9
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc--
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL-- 496 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~-- 496 (529)
+..+||+++++ .+.+..||+++++|.||.|||+|+|.+. ....|.|.|||++..+. ++||++.++|+++..
T Consensus 33 g~~dpyv~v~~----~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~ 106 (132)
T cd04014 33 QLLDPYVSIDV----DDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRG 106 (132)
T ss_pred cCcCcEEEEEE----CCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccC
Confidence 56789999886 2334579999999999999999999997 45789999999988765 899999999999987
Q ss_pred cceeeeEEEcCCCCccEEEEEEEEEe
Q 009664 497 EGEYTDCFELDGTKSGKLKLHLKWMP 522 (529)
Q Consensus 497 ~~~~~~w~~L~~~~~G~i~l~~~~~~ 522 (529)
....+.||+|+. .|+|+|++.|+.
T Consensus 107 ~~~~~~w~~L~~--~G~l~l~~~~~~ 130 (132)
T cd04014 107 SGSFDLWVDLEP--QGKLHVKIELKG 130 (132)
T ss_pred CCcccEEEEccC--CcEEEEEEEEec
Confidence 345699999985 699999999985
No 145
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.49 E-value=1.2e-13 Score=118.42 Aligned_cols=118 Identities=22% Similarity=0.236 Sum_probs=87.7
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|++++.|.+... .+.+..+ +.+...+..+..+||+++++... +..++||++++++.||.|||.
T Consensus 2 ~G~l~~~l~y~~~~~----------~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~--~~~~~kT~v~~~t~~P~Wne~ 69 (125)
T cd08386 2 LGRIQFSVSYDFQES----------TLTLKILKAVELPAKDFSGTSDPFVKIYLLPD--KKHKLETKVKRKNLNPHWNET 69 (125)
T ss_pred ccEEEEEEEECCCCC----------EEEEEEEEecCCCCccCCCCCCceEEEEECCC--CCcceeeeeecCCCCCcccee
Confidence 599999999975432 1222222 22222334567889999987432 345689999999999999999
Q ss_pred EEEEee---cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCC
Q 009664 457 FDFVVE---DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG 508 (529)
Q Consensus 457 f~f~v~---~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~ 508 (529)
|.|.+. ......|.++|||++.+++ ++||++.++++++........|++|..
T Consensus 70 f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 70 FLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred EEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 999752 2345689999999998876 899999999999987777799999863
No 146
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.48 E-value=2.7e-13 Score=116.34 Aligned_cols=118 Identities=18% Similarity=0.242 Sum_probs=86.6
Q ss_pred cccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCc-ccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 378 YRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEK-ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 378 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
++|+|.+++.|.+... .+.++.++ .+...+.. +.+++|+++++... ..+++||++++++.||+||
T Consensus 1 ~~G~l~~~l~y~~~~~----------~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~--~~~~~kT~v~~~t~nP~wn 68 (128)
T cd08388 1 KLGTLFFSLRYNSEKK----------ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE--KEHKVKTRVLRKTRNPVYD 68 (128)
T ss_pred CCeEEEEEEEEECCCC----------EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC--cCceeeccEEcCCCCCcee
Confidence 3699999999986432 22232222 22222333 67889999987543 3456799999999999999
Q ss_pred ceEEE-Eee--cCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc--ceeeeEEEcC
Q 009664 455 QTFDF-VVE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE--GEYTDCFELD 507 (529)
Q Consensus 455 e~f~f-~v~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~--~~~~~w~~L~ 507 (529)
|.|.| .++ +.....|.++|||++.+++ ++||++.++|+++... ++..-|.+|+
T Consensus 69 E~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 69 ETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred eEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99999 443 2345679999999998876 8999999999998655 5578898876
No 147
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.48 E-value=1.6e-13 Score=117.19 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=87.5
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcC-CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNG-EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
|+|.+++.|.+... .+.+..++ .+...+ ..+.+++|+++++.... ...+||++++++.||+|||.
T Consensus 1 G~l~~~l~y~~~~~----------~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~--~~~~~T~v~~~~~~P~wne~ 68 (123)
T cd08390 1 GRLWFSVQYDLEEE----------QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE--RRSLQSKVKRKTQNPNFDET 68 (123)
T ss_pred CEEEEEEEECCCCC----------EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC--CCceEeeeEcCCCCCccceE
Confidence 78888888875432 12222221 121222 34567899999875432 34679999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCC
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG 508 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~ 508 (529)
|.|.++.. ....|.|+|||++..++ ++||++.++|+++........|++|+.
T Consensus 69 f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 69 FVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred EEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 99998643 34689999999998765 899999999999988888899999973
No 148
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.46 E-value=5.6e-14 Score=122.10 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=87.5
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|++++.|.|... .+.+..++ .+...+ .+.+++|+++++........++||++++++.||+|||.
T Consensus 1 ~G~i~~sl~y~~~~~----------~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~ 69 (137)
T cd08409 1 LGDIQISLTYNPTLN----------RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNES 69 (137)
T ss_pred CcEEEEEEEECCCCC----------eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccce
Confidence 389999999987542 22332222 222223 55688999999876544445779999999999999999
Q ss_pred EEEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCC
Q 009664 457 FDFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK 510 (529)
Q Consensus 457 f~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~ 510 (529)
|.|.++. .....|.|+|||++..++ ++||++.++..........++|+.+..++
T Consensus 70 F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p 126 (137)
T cd08409 70 FSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKP 126 (137)
T ss_pred EEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCC
Confidence 9999963 355789999999998766 89999999976554444456666665543
No 149
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.46 E-value=3.7e-13 Score=114.98 Aligned_cols=96 Identities=23% Similarity=0.433 Sum_probs=80.7
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
..+.++||+++++ +..+++|++++++.||.|||.|.|.+.+.....|.|+|||++..++ ++||++.++|+++..
T Consensus 17 ~~~~~DPyv~v~~-----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~ 91 (123)
T cd04025 17 RNGTSDPFVRVFY-----NGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQ 91 (123)
T ss_pred CCCCcCceEEEEE-----CCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHccc
Confidence 3456789999885 4467899999999999999999999987667889999999998876 899999999999977
Q ss_pred cceeeeEEEcCC---------CCccEEEEEE
Q 009664 497 EGEYTDCFELDG---------TKSGKLKLHL 518 (529)
Q Consensus 497 ~~~~~~w~~L~~---------~~~G~i~l~~ 518 (529)
.+....||.|.. ...|.|++.+
T Consensus 92 ~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 92 AKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 666789999975 2457777765
No 150
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.46 E-value=8.2e-14 Score=121.20 Aligned_cols=119 Identities=22% Similarity=0.231 Sum_probs=88.1
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|.++++|.+... .+.+..+ +++...+..+.++||+++++...+....++||++++++.||.|||+
T Consensus 1 ~G~l~~~l~y~~~~~----------~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~ 70 (136)
T cd08404 1 RGELLLSLCYQPTTN----------RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNES 70 (136)
T ss_pred CCeEEEEEEEeCCCC----------eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCce
Confidence 599999999975432 2222222 2222334456789999998755433345789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
|.|.++.. ....|.|+|||++.+++ ++||++.++++. ......+|++|...
T Consensus 71 F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 71 FVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred EEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 99998642 45679999999999876 899999999998 34456889988654
No 151
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=1.6e-13 Score=158.86 Aligned_cols=101 Identities=21% Similarity=0.480 Sum_probs=89.3
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-CCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
.+.+|||+.+++ +...++||++++++.||+|||.|+|.+.+| .++.|+|+|||++.++++.||.+.|+|.++..+
T Consensus 1996 ~~~sdPyv~l~~----g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~ 2071 (2102)
T PLN03200 1996 MGNTNAFCKLTL----GNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVME 2071 (2102)
T ss_pred cCCCCCeEEEEE----CCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcC
Confidence 467889998774 223367999999999999999999999887 457799999999999889999999999999999
Q ss_pred ceeeeEEEcCC--CCccE---EEEEEEEEeC
Q 009664 498 GEYTDCFELDG--TKSGK---LKLHLKWMPQ 523 (529)
Q Consensus 498 ~~~~~w~~L~~--~~~G~---i~l~~~~~~~ 523 (529)
+.++.||+|.+ ++.|+ |+++++|++.
T Consensus 2072 ~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200 2072 GTYSGEYSLNPESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred ceeeeeeecCcccccCCCcceEEEEEEecCC
Confidence 99999999996 67899 9999999873
No 152
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.44 E-value=5.6e-13 Score=113.36 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=79.3
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.++||+.+.+ .+....||++++++.||.|||.|.|.+.+ ....|.|+|||++..+. ++||++.++++++.
T Consensus 16 d~~g~~DPYv~v~~----~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~ 90 (121)
T cd04054 16 DITGSSDPYCIVKV----DNEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVIGKVSLTREVIS 90 (121)
T ss_pred CCCCCCCceEEEEE----CCEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEEEEEEEcHHHhc
Confidence 34457789998875 23345799999999999999999999865 34689999999998876 89999999999887
Q ss_pred ccc-eeeeEEEcCCC-----CccEEEEEEE
Q 009664 496 LEG-EYTDCFELDGT-----KSGKLKLHLK 519 (529)
Q Consensus 496 ~~~-~~~~w~~L~~~-----~~G~i~l~~~ 519 (529)
..+ ..++|++|.+. ..|+|+|++.
T Consensus 91 ~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 91 AHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred cCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 543 36899999763 3799998864
No 153
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.43 E-value=1.2e-13 Score=120.22 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=86.5
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|.++++|.+... .+.+..++ .+...+..+.+++|+++++........++||++++++.||.|||.
T Consensus 1 ~G~l~~sl~y~~~~~----------~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~ 70 (136)
T cd08405 1 RGELLLSLCYNPTAN----------RITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNES 70 (136)
T ss_pred CcEEEEEEEEcCCCC----------eEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccce
Confidence 589999999986432 22222222 222234456788999999765444445789999999999999999
Q ss_pred EEEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 457 FDFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 457 f~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
|.|.++. ..+..|.|+|||++.+++ ++||++.+++.+. ....++|+++...
T Consensus 71 F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 71 FIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred EEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 9999863 245689999999998876 8999999999885 2334667666544
No 154
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.43 E-value=8.4e-13 Score=110.55 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=71.3
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccccee
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEY 500 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~~ 500 (529)
..+||+.+.+ +.++.+|+++++ .||.|||.|.|.+.+.. ..|.|+|||++..++|+||++.|+|+++..+...
T Consensus 19 ~~dPYV~Ik~-----g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~ 91 (127)
T cd08394 19 KFNTYVTLKV-----QNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEE 91 (127)
T ss_pred CCCCeEEEEE-----CCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCC
Confidence 3458887775 667889999987 59999999999998754 4499999999987779999999999999876543
Q ss_pred --eeEEEcCC---CCccEEE
Q 009664 501 --TDCFELDG---TKSGKLK 515 (529)
Q Consensus 501 --~~w~~L~~---~~~G~i~ 515 (529)
.+||+|+. ...|++.
T Consensus 92 ~~~~Wy~L~~~~~~~~~~~~ 111 (127)
T cd08394 92 GPGEWLTLDSEVNMKNGQIV 111 (127)
T ss_pred CCCccEecChHHhccCCeEe
Confidence 89999984 3456553
No 155
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.43 E-value=6.3e-13 Score=115.22 Aligned_cols=102 Identities=20% Similarity=0.338 Sum_probs=81.9
Q ss_pred CcccCCCceEEEEEEEcc--CCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 418 EKALKSGANGTEAIELEK--DASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
..+.++||+++++..... ...++||+++++|.||.|||.|.|.+.. ....|.++|||++..++ ++||++.++++++
T Consensus 17 ~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l 95 (133)
T cd04033 17 IFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRLTRDDFLGQVEVPLNNL 95 (133)
T ss_pred CCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCCCCCCeeEEEEEEHHHC
Confidence 345678999998754311 1235799999999999999999999864 35689999999999876 8999999999998
Q ss_pred cccce------eeeEEEcCC-----CCccEEEEEEEE
Q 009664 495 ILEGE------YTDCFELDG-----TKSGKLKLHLKW 520 (529)
Q Consensus 495 ~~~~~------~~~w~~L~~-----~~~G~i~l~~~~ 520 (529)
..... ..+||+|.+ ...|+|++++.|
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 96 PTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 86532 369999984 247999999987
No 156
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.43 E-value=1.9e-13 Score=118.96 Aligned_cols=124 Identities=22% Similarity=0.315 Sum_probs=89.5
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|.+++.|.|... .+.+..++ .+...+..+.++||+++++........++||++++++.||.|||.
T Consensus 1 ~G~l~~~l~y~~~~~----------~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~ 70 (136)
T cd08402 1 LGDICFSLRYVPTAG----------KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNES 70 (136)
T ss_pred CcEEEEEeEEcCCCC----------eEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccce
Confidence 489999999987542 12222222 222234456789999999765444446789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCccEE
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL 514 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i 514 (529)
|.|.++.. ....|.|+|||++.+++ ++||++.+++... .....+|+++...+...+
T Consensus 71 f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 71 FSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPI 129 (136)
T ss_pred EEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCee
Confidence 99998643 34589999999999876 8999999999863 334577887766544443
No 157
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.42 E-value=2.1e-12 Score=110.65 Aligned_cols=99 Identities=13% Similarity=0.221 Sum_probs=81.6
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
..+.++||+.+.+ +.+++||++++++.||+|||.|.|.+.+. ...|.|+|||++..++++||++.++++++.
T Consensus 20 ~~g~~dPyv~v~~-----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~-- 91 (126)
T cd04046 20 SGGGADPYVIIKC-----EGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFLGQATLSADPND-- 91 (126)
T ss_pred CCCCcCccEEEEE-----CCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCceEEEEEecccCC--
Confidence 4567889998874 45678999999999999999999988764 678999999999887799999999998753
Q ss_pred ceeeeEEEcC-------CCCccEEEEEEEEEeCC
Q 009664 498 GEYTDCFELD-------GTKSGKLKLHLKWMPQP 524 (529)
Q Consensus 498 ~~~~~w~~L~-------~~~~G~i~l~~~~~~~~ 524 (529)
....+||+|. +...|+|.+++...+.+
T Consensus 92 ~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~ 125 (126)
T cd04046 92 SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDDL 125 (126)
T ss_pred CcCceEEEcccCCCCCCCCCCCEEEEEEEEcccc
Confidence 4446888993 34689999999877654
No 158
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.42 E-value=7e-13 Score=114.99 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=85.2
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcch--hhhhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMT--SLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|.++++|.|... .+.+. ..+++...+..+.++||+++++........++||+++++|.||+|||.|
T Consensus 1 G~i~~~l~y~~~~~----------~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F 70 (135)
T cd08410 1 GELLLSLNYLPSAG----------RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESF 70 (135)
T ss_pred CcEEEEEEECCCCC----------eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeE
Confidence 78999999986542 22222 2222333344567899999987544444467899999999999999999
Q ss_pred EEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 458 DFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 458 ~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
.|.+.. .....|.|+|||++..++ ++||++.|+...... ...++|+.|...
T Consensus 71 ~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 71 SFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred EEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 999953 244579999999998766 899999987654422 224778877654
No 159
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.40 E-value=1.9e-12 Score=111.10 Aligned_cols=99 Identities=25% Similarity=0.384 Sum_probs=80.2
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+..++|+++++ ...+...+||++++++.||.|||.|.|.+.......|.|+|||++..++ ++||++.++|+++...
T Consensus 19 ~~~~Dpyv~v~~--~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~ 96 (126)
T cd04043 19 NGLSDPYVTLVD--TNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFG 96 (126)
T ss_pred CCCCCceEEEEE--CCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcC
Confidence 456789998863 1222456899999999999999999999987666789999999998765 7999999999986543
Q ss_pred c---eeeeEEEcCCCCccEEEEEEEEE
Q 009664 498 G---EYTDCFELDGTKSGKLKLHLKWM 521 (529)
Q Consensus 498 ~---~~~~w~~L~~~~~G~i~l~~~~~ 521 (529)
. ....|++|.+ .|++++++.+.
T Consensus 97 ~~~~~~~~w~~l~~--~g~i~l~~~~~ 121 (126)
T cd04043 97 DDGLPREIWLDLDT--QGRLLLRVSME 121 (126)
T ss_pred CCCCCceEEEEcCC--CCeEEEEEEEe
Confidence 2 3478999986 69999988775
No 160
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.40 E-value=1.8e-12 Score=110.88 Aligned_cols=99 Identities=23% Similarity=0.329 Sum_probs=81.1
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
+..++|+.+.+... ...+||++++++.||.|||.|.|.+. ...+.|.|+|||++..++ ++||++.++|.++....
T Consensus 22 ~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~ 97 (124)
T cd04044 22 GTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNP 97 (124)
T ss_pred CCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCc
Confidence 45679998886211 46789999999999999999999998 457799999999998765 89999999999998876
Q ss_pred eee-eEEEcC--CCCccEEEEEEEEEe
Q 009664 499 EYT-DCFELD--GTKSGKLKLHLKWMP 522 (529)
Q Consensus 499 ~~~-~w~~L~--~~~~G~i~l~~~~~~ 522 (529)
... .|+.+. +...|+|+++++|.|
T Consensus 98 ~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 98 EQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred cccCcchhhhcCCccceEEEEEEEeCC
Confidence 654 344443 556899999999987
No 161
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.38 E-value=2e-12 Score=112.22 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=86.2
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccC-CeeEeeecccCCCCCccCce
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKD-ASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~kT~v~~~t~nP~wne~ 456 (529)
|+|.+++.|.+... .+.++.++ .+...+..+.+++|++++++..... ..++||++++++.||+|||+
T Consensus 2 ~ei~~sL~Y~~~~~----------~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEt 71 (138)
T cd08408 2 PELLLGLEYNALTG----------RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKET 71 (138)
T ss_pred CeEEEEeEEcCCCC----------eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeee
Confidence 68889999976542 23332222 2223345567899999998765432 35689999999999999999
Q ss_pred EEEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 457 FDFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 457 f~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
|.|.++. ..+..|.|+|||.+.+++ ++||++.+++..... .+.++|+.+..+
T Consensus 72 F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~ 126 (138)
T cd08408 72 FVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKES 126 (138)
T ss_pred EEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHhC
Confidence 9999973 466799999999998766 899999999986432 223577777543
No 162
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.38 E-value=3.2e-13 Score=117.28 Aligned_cols=123 Identities=22% Similarity=0.336 Sum_probs=90.2
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|++.++|.+... .+.+...+ .+...+..+..++|+++++........+++|++++++.||.|||.|
T Consensus 1 G~i~~~l~y~~~~~----------~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f 70 (134)
T cd00276 1 GELLLSLSYLPTAE----------RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAF 70 (134)
T ss_pred CeEEEEEEeeCCCC----------EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeE
Confidence 78888888875431 22222222 2222234557789999997655433457899999999999999999
Q ss_pred EEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCccEE
Q 009664 458 DFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL 514 (529)
Q Consensus 458 ~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i 514 (529)
.|.+... ....|.|+|||++..++ ++||++.+++++ .....++|++|.......+
T Consensus 71 ~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 71 SFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred EEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 9999754 36789999999998655 899999999999 4455689999987654433
No 163
>PLN03008 Phospholipase D delta
Probab=99.37 E-value=3.2e-12 Score=136.10 Aligned_cols=101 Identities=17% Similarity=0.337 Sum_probs=87.7
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG 498 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~ 498 (529)
.+.++||++|.+ .+.++.||++++++.||+|||.|.|.|.++ ...|.|+|+|++.++++.||++.|+|.++....
T Consensus 74 ~~tSDPYV~I~L----g~~rv~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge 148 (868)
T PLN03008 74 VITSDPYVTVVV----PQATLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE 148 (868)
T ss_pred cCCCCceEEEEE----CCcceeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCC
Confidence 356789999986 234467999999999999999999999885 458999999999998899999999999998888
Q ss_pred eeeeEEEcCCC------CccEEEEEEEEEeCC
Q 009664 499 EYTDCFELDGT------KSGKLKLHLKWMPQP 524 (529)
Q Consensus 499 ~~~~w~~L~~~------~~G~i~l~~~~~~~~ 524 (529)
..+.|++|.+. +.|+|+++++|+|..
T Consensus 149 ~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 149 RISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred ceEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 88999999752 357999999999963
No 164
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.37 E-value=3.8e-12 Score=108.21 Aligned_cols=95 Identities=20% Similarity=0.357 Sum_probs=80.1
Q ss_pred EEEEEEEecCCCcc--CCCCC--CCcEEEEEEecCCCCeEeccccCCCCC--CeeccEEEEEEecC--------------
Q 009664 264 LEVKLVQAKGLTNK--DLIGK--SDPYAVLFVRPLPEKTKKSKTINNDLN--PIWNEHFEFIVEDE-------------- 323 (529)
Q Consensus 264 L~V~v~~a~~L~~~--d~~g~--~dpyv~v~~~~~~~~~~kT~~~~~t~n--P~Wne~f~~~v~~~-------------- 323 (529)
|+|.|.+|++++.. +..|. +||||+..+.+....+++|.+.++++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 79999999996543 34564 999999999866567899999999999 99999999887551
Q ss_pred ---------CCCEEEEEEEECCCCCCCceeEEEEEECcccCCCc
Q 009664 324 ---------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 358 (529)
Q Consensus 324 ---------~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 358 (529)
....|.++|||.|.+++|++||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24579999999999999999999999999876544
No 165
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.37 E-value=1.6e-12 Score=111.97 Aligned_cols=74 Identities=28% Similarity=0.436 Sum_probs=64.9
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.+|||+-++ .+.++.||+++++++||+|||.|+|.+.++ +..|.++|||+|.++. |+||.++|+|..+.
T Consensus 22 D~~~sSDPyVVl~-----lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~ 95 (168)
T KOG1030|consen 22 DFLGSSDPYVVLE-----LGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSDDFMGEATIPLKPLL 95 (168)
T ss_pred ccccCCCCeEEEE-----ECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcccccceeeeccHHHH
Confidence 3346788998776 488899999999999999999999999985 5679999999999987 89999999998775
Q ss_pred c
Q 009664 496 L 496 (529)
Q Consensus 496 ~ 496 (529)
.
T Consensus 96 ~ 96 (168)
T KOG1030|consen 96 E 96 (168)
T ss_pred H
Confidence 4
No 166
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.37 E-value=4.1e-12 Score=110.24 Aligned_cols=102 Identities=23% Similarity=0.426 Sum_probs=79.2
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---------CCCEEEEEEEECCCCCC-CeeEE
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---------LHDMLIAEVWDHDTFGK-DYMGR 486 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------~~~~L~i~V~D~~~~~~-d~lG~ 486 (529)
+..+.++||+++++ +..++||+++++|.||.|||.|.|.+... ....|.|+|||++..++ ++||+
T Consensus 17 d~~g~~dpyv~v~~-----~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~ 91 (135)
T cd04017 17 DKSGLSDPFARVSF-----LNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGR 91 (135)
T ss_pred CCCCCCCCEEEEEE-----CCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceE
Confidence 44567889999885 34578999999999999999999975321 12579999999998876 89999
Q ss_pred EEE-eccccccc---ceeeeEEEcC--CCCccEEEEEEEEEeC
Q 009664 487 CIL-TLTRVILE---GEYTDCFELD--GTKSGKLKLHLKWMPQ 523 (529)
Q Consensus 487 ~~i-~L~~l~~~---~~~~~w~~L~--~~~~G~i~l~~~~~~~ 523 (529)
+.+ ++..+... ....+||+|. +...|+|.|+++..++
T Consensus 92 ~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 92 SVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred EEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 997 44444321 3358999997 3467999999998875
No 167
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.36 E-value=8.4e-13 Score=114.55 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=84.3
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|.+++.|.+... .+.+..++ .+...+..+.+++|+++++........++||++++++.||.|||.|
T Consensus 1 g~l~~~~~y~~~~~----------~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f 70 (134)
T cd08403 1 GELMFSLCYLPTAG----------RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEAL 70 (134)
T ss_pred CeEEEEEEEcCCCC----------EEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceE
Confidence 78889999986542 22222222 2222344567889999997654444467899999999999999999
Q ss_pred EEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 458 DFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 458 ~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
.|.++.. ....|.|+|||++..++ ++||++.+++... ....+.|+++...
T Consensus 71 ~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~~ 123 (134)
T cd08403 71 VFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEMLAN 123 (134)
T ss_pred EEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCC--CchHHHHHHHHHC
Confidence 9998632 44579999999999876 8999999998732 2334677777543
No 168
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.36 E-value=2.6e-12 Score=111.17 Aligned_cols=110 Identities=19% Similarity=0.283 Sum_probs=81.1
Q ss_pred cccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEcc--CCeeEeeecccCCCCCcc
Q 009664 378 YRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEK--DASQKRREVVNDCLNPIW 453 (529)
Q Consensus 378 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~kT~v~~~t~nP~w 453 (529)
++|+|.+++.|.+... .+.+..++ .+...+..+.+++|+++++..... ...++||+++++|.||+|
T Consensus 1 ~~G~l~~~l~y~~~~~----------~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~w 70 (133)
T cd04009 1 PYGVLTVKAYYRASEQ----------SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLF 70 (133)
T ss_pred CceEEEEEEEEcCCCC----------EEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCcc
Confidence 3699999999975321 12222222 222233456788999998754332 346789999999999999
Q ss_pred CceEEEEeecC----CCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 454 NQTFDFVVEDG----LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 454 ne~f~f~v~~~----~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
||.|.|.+... ....|.|+|||++..++ ++||++.++|+++..-
T Consensus 71 nE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 71 DESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred CCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999998642 35689999999998875 8999999999998643
No 169
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.36 E-value=2.8e-12 Score=107.11 Aligned_cols=85 Identities=26% Similarity=0.513 Sum_probs=72.6
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCcc-CceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIW-NQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
.+.+++|+++++ +..++||++++++.||.| ||.|+|.+... .+..|.|+|||++..++ ++||++.++++++
T Consensus 18 ~~~~Dpyv~v~~-----~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l 92 (110)
T cd08688 18 SDLTDAFVEVKF-----GSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL 92 (110)
T ss_pred CCCCCceEEEEE-----CCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHh
Confidence 356789999886 337899999999999999 99999999754 35789999999999876 8999999999999
Q ss_pred ccc---ceeeeEEEcCC
Q 009664 495 ILE---GEYTDCFELDG 508 (529)
Q Consensus 495 ~~~---~~~~~w~~L~~ 508 (529)
... ...+.||+|.+
T Consensus 93 ~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 93 LLKDSVSQISGWFPIYD 109 (110)
T ss_pred cccCCccccCCeEEccc
Confidence 873 34689999975
No 170
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.36 E-value=7e-13 Score=114.94 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=73.2
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
+..+.+++|+++++........++||++++++.||.|||.|.|.+... ....|.|+|||++..++ ++||++.++++.
T Consensus 29 d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 29 DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence 445678899999987654445678999999999999999999998643 45689999999998765 899999999986
Q ss_pred ccccceeeeEEEcCCC
Q 009664 494 VILEGEYTDCFELDGT 509 (529)
Q Consensus 494 l~~~~~~~~w~~L~~~ 509 (529)
......+||++...
T Consensus 109 --~~~~~~~W~~~l~~ 122 (133)
T cd08384 109 --KGERLRHWLDCLKN 122 (133)
T ss_pred --CCchHHHHHHHHhC
Confidence 23345788888654
No 171
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.36 E-value=3.2e-12 Score=109.04 Aligned_cols=95 Identities=20% Similarity=0.353 Sum_probs=76.6
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC---CeeEEEEEecccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK---DYMGRCILTLTRV 494 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~---d~lG~~~i~L~~l 494 (529)
..+.++||+.+++ .+.+++||++++++.||.|||.|+|.+.. ...|.|+|||++.+++ ++||++.++++++
T Consensus 17 ~~~~~dpyv~v~~----~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l 90 (123)
T cd08382 17 LFRLPDPFAVITV----DGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGFLGCVRIRANAV 90 (123)
T ss_pred CCCCCCcEEEEEE----CCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCceEeEEEEEHHHc
Confidence 3457889998885 23667899999999999999999999975 6799999999998753 5999999999999
Q ss_pred cccce-eeeEEEcCCC-------CccEEEEEE
Q 009664 495 ILEGE-YTDCFELDGT-------KSGKLKLHL 518 (529)
Q Consensus 495 ~~~~~-~~~w~~L~~~-------~~G~i~l~~ 518 (529)
..... ...||+|... ..|+|.+++
T Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 91 LPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred cccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 76554 3789999532 257776654
No 172
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=4.4e-12 Score=111.11 Aligned_cols=93 Identities=20% Similarity=0.297 Sum_probs=76.3
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
.+.++||++|.+ +.++.||++++++.||+|||.|.|.+..+ ..+.|.|+|||++..++ ++||++.++|+++..
T Consensus 32 ~~~~DPYV~V~~-----~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~ 106 (151)
T cd04018 32 KELVDPYVEVSF-----AGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISN 106 (151)
T ss_pred CCCcCcEEEEEE-----CCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence 356789999885 34567999999999999999999998644 45689999999998865 899999999999877
Q ss_pred cce-------eeeEEEcCCCCccEEEE
Q 009664 497 EGE-------YTDCFELDGTKSGKLKL 516 (529)
Q Consensus 497 ~~~-------~~~w~~L~~~~~G~i~l 516 (529)
.+. ...|++|.++..+..++
T Consensus 107 ~~~~~~lp~~~p~W~~lyg~~~~~~~~ 133 (151)
T cd04018 107 SGDEGFLPTFGPSFVNLYGSPREYSLL 133 (151)
T ss_pred CCccccCCccCceEEEeecCccccccc
Confidence 653 26999999887665544
No 173
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.35 E-value=2.7e-12 Score=109.04 Aligned_cols=91 Identities=21% Similarity=0.160 Sum_probs=75.5
Q ss_pred CcccCCCceEEEEEEEc--cCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCC----CCC-CeeEEEEEe
Q 009664 418 EKALKSGANGTEAIELE--KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT----FGK-DYMGRCILT 490 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~--~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~----~~~-d~lG~~~i~ 490 (529)
..+.++||+++++.... .....+||++++++.||+|||.|.|.+.....+.|.|+|||++. .++ ++||++.++
T Consensus 17 ~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~ 96 (120)
T cd04048 17 VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECT 96 (120)
T ss_pred CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEE
Confidence 34577899999976543 23356899999999999999999998765556789999999996 555 899999999
Q ss_pred cccccccceeeeEEEcCC
Q 009664 491 LTRVILEGEYTDCFELDG 508 (529)
Q Consensus 491 L~~l~~~~~~~~w~~L~~ 508 (529)
++++........|++|.+
T Consensus 97 l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 97 LGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred HHHHhcCCCcEEEEEccC
Confidence 999998777788999954
No 174
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.35 E-value=8.5e-12 Score=105.89 Aligned_cols=94 Identities=22% Similarity=0.384 Sum_probs=77.4
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+.++||+.+++ ...+++|++++++.||.|||+|.|.+.+. ...|.|+|||++..++ ++||++.+++.++...
T Consensus 19 ~~~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~ 92 (119)
T cd08377 19 GGKSDPFCVLEL-----VNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG 92 (119)
T ss_pred CCCCCcEEEEEE-----CCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCCC
Confidence 346789998875 34467999999999999999999998753 5789999999998765 8999999999998643
Q ss_pred ceeeeEEEcCCC-----CccEEEEEEEE
Q 009664 498 GEYTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 498 ~~~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
..+||+|.+. ..|+|.+++++
T Consensus 93 --~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 93 --ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred --CceEEECcccCCCCceeeEEEEEEEe
Confidence 3689999642 48999999875
No 175
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.34 E-value=4.5e-12 Score=108.23 Aligned_cols=116 Identities=21% Similarity=0.300 Sum_probs=83.8
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|++++.|.+... .+.+..+ +.+...+..+.+++|+++++........++||++++++.||.|||.
T Consensus 1 ~G~~~~~l~y~~~~~----------~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~ 70 (123)
T cd04035 1 LGTLEFTLLYDPANS----------ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNET 70 (123)
T ss_pred CcEEEEEEEEeCCCC----------EEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccce
Confidence 388999999976531 1222222 1222233456788999999865554556889999999999999999
Q ss_pred EEEE-ee--cCCCCEEEEEEEECCCCCCCeeEEEEEecccccccceeeeEE
Q 009664 457 FDFV-VE--DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCF 504 (529)
Q Consensus 457 f~f~-v~--~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~~~~w~ 504 (529)
|.|. +. +..+..|.|+|||++..++++||++.++|+++..++...-|+
T Consensus 71 f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 71 LTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeec
Confidence 9996 32 224578999999998875589999999999998766544444
No 176
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4.1e-12 Score=128.25 Aligned_cols=120 Identities=31% Similarity=0.606 Sum_probs=100.2
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC-
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI- 338 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~- 338 (529)
=...++++|+.|.+|..+|..|++|||+...++ ..+.+|++|...+||+|||.|.|..++. +..+.++|||.|..
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dl 368 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDL 368 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccH
Confidence 347899999999999999999999999999997 6778999999999999999999999876 45899999998752
Q ss_pred ----------CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 339 ----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 339 ----------~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
..|||+|+..+.+..|.. ..+.||.|.++.+ +...+|.|++.+..
T Consensus 369 ksklrqkl~resddflgqtvievrtlsg--emdvwynlekrtd---ksavsgairlhisv 423 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTD---KSAVSGAIRLHISV 423 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccc---hhhccceEEEEEEE
Confidence 358999999999887653 3578999987642 45667877665544
No 177
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.32 E-value=1.5e-11 Score=100.26 Aligned_cols=97 Identities=38% Similarity=0.657 Sum_probs=82.5
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|.|+|++|++|......+..+||+++++.+.+...++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36899999999998776568899999999833225789999999999999999999998765679999999998877789
Q ss_pred eeEEEEEECcccCCCce
Q 009664 343 LIGCAQVRLCELEPGKV 359 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~~ 359 (529)
++|.+.+++.++..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999998866543
No 178
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.31 E-value=1.6e-11 Score=99.88 Aligned_cols=101 Identities=39% Similarity=0.725 Sum_probs=86.5
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|.|+|++|++|......+..+|||.+.+.. ...++|+++.++.||.||+.|.|.+.......+.++|||.+..+.+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 478999999998866677899999999972 367899999999999999999999977445689999999998877899
Q ss_pred eEEEEEECcccC-CCceeeEEEEc
Q 009664 344 IGCAQVRLCELE-PGKVKDVWLKL 366 (529)
Q Consensus 344 lG~~~i~l~~l~-~~~~~~~~~~L 366 (529)
+|.+.+++.++. .......|++|
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceecC
Confidence 999999999987 66666777754
No 179
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.31 E-value=9.7e-12 Score=104.05 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=70.9
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC----CCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
.+..+||+++++ +.+++||++++++.||.|||.|.|.+..+ .+..|.|+|||++.+++ ++||++.++|++
T Consensus 18 ~~~~dpyv~v~~-----~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 92 (111)
T cd04011 18 GGNIDPVVKVEV-----GGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGT 92 (111)
T ss_pred CCCCCCEEEEEE-----CCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCcc
Confidence 356789999886 34578999999999999999999998543 35689999999998875 899999999999
Q ss_pred ccccce---eeeEEEcCC
Q 009664 494 VILEGE---YTDCFELDG 508 (529)
Q Consensus 494 l~~~~~---~~~w~~L~~ 508 (529)
+..... +.+||+|.+
T Consensus 93 v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 93 VYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCCCCcceEEEEEeeC
Confidence 976533 589999975
No 180
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.30 E-value=4.1e-12 Score=106.31 Aligned_cols=84 Identities=19% Similarity=0.368 Sum_probs=69.5
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---CCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+.++||+++++... +...+||++++++.||+|||.|.|.+... ....|.++|||++..++ ++||++.++++++.
T Consensus 21 ~~~Dpyv~v~~~~~--~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 21 GSSDPYVTASFAKF--GKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCccEEEEEccC--CCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh
Confidence 57789999986432 34568999999999999999999988643 45689999999999876 89999999999997
Q ss_pred ccceeeeEEEcCC
Q 009664 496 LEGEYTDCFELDG 508 (529)
Q Consensus 496 ~~~~~~~w~~L~~ 508 (529)
.+ ..|+++..
T Consensus 99 ~~---~~~~~~~~ 108 (111)
T cd04041 99 ED---RNWMGRRE 108 (111)
T ss_pred cC---CCCCcccc
Confidence 43 57887764
No 181
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.30 E-value=1.3e-11 Score=105.85 Aligned_cols=93 Identities=26% Similarity=0.578 Sum_probs=74.2
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCC------------CCCeeE
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF------------GKDYMG 485 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~------------~~d~lG 485 (529)
..+.++||+.+++ +..+++|++++++.||.|||.|.|.+.++ ...|.|+|||++.. .+++||
T Consensus 18 ~~g~~DPyv~v~~-----~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG 91 (127)
T cd04027 18 KTGTSDPYVTVQV-----GKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLG 91 (127)
T ss_pred CCCCcCcEEEEEE-----CCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccceeccccCCCcce
Confidence 3456789998885 34578999999999999999999998654 56899999999852 248999
Q ss_pred EEEEecccccccceeeeEEEcCCC-----CccEEEEEE
Q 009664 486 RCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHL 518 (529)
Q Consensus 486 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~ 518 (529)
++.+++.++. +...+||+|... ..|+|.+++
T Consensus 92 ~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 92 QTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred EEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 9999999874 345799999852 468888764
No 182
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.30 E-value=2e-11 Score=105.39 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=77.6
Q ss_pred cccCCCceEEEEEEEccC--------CeeEeeecccCCCCCcc-CceEEEEeecCCCCEEEEEEEECCCCC----CCeeE
Q 009664 419 KALKSGANGTEAIELEKD--------ASQKRREVVNDCLNPIW-NQTFDFVVEDGLHDMLIAEVWDHDTFG----KDYMG 485 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~--------~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~L~i~V~D~~~~~----~d~lG 485 (529)
.+.++||+++.+...+.. .+++||++++++.||+| ||.|.|.+. .++.|.++|||++..+ +++||
T Consensus 18 fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~V~D~~~~~~~~~~d~lG 95 (137)
T cd08691 18 FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIEVKDKFAKSRPIIRRFLG 95 (137)
T ss_pred CCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEEEEecCCCCCccCCceEE
Confidence 357889999997543322 45799999999999999 999999985 4568999999986532 48999
Q ss_pred EEEEecccccccc---eeeeEEEcCC-----CCccEEEEEE
Q 009664 486 RCILTLTRVILEG---EYTDCFELDG-----TKSGKLKLHL 518 (529)
Q Consensus 486 ~~~i~L~~l~~~~---~~~~w~~L~~-----~~~G~i~l~~ 518 (529)
++.++++++.... ....||+|.- ..+|+|.+++
T Consensus 96 ~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 96 KLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9999999998653 3578999973 3468877765
No 183
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.29 E-value=1e-11 Score=107.81 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=75.8
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---------------CCCEEEEEEEECCCCCC-C
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---------------LHDMLIAEVWDHDTFGK-D 482 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------------~~~~L~i~V~D~~~~~~-d 482 (529)
.+..+||+++++... ....++||++++++.||.|||.|.|.+... ....|.|+|||++..++ +
T Consensus 16 ~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~ 94 (137)
T cd08675 16 NGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDD 94 (137)
T ss_pred CCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCc
Confidence 456789999987532 235678999999999999999999998764 45689999999998755 8
Q ss_pred eeEEEEEecccccccceeeeEEEcCCC
Q 009664 483 YMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 483 ~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
+||++.++|+++...+....||+|+..
T Consensus 95 ~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 95 FLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999999877777999999864
No 184
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.28 E-value=1.7e-11 Score=101.67 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=62.7
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
..+||+.+++ +.+++||++++++.||+|||.|.|.+.+. .+..|.|+|||++..++ ++||++.++|+++....
T Consensus 25 ~~DPYv~v~~-----~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 25 DMDPFVIISF-----GRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ccCceEEEEE-----CCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 4689998885 45678999999999999999999998654 44589999999998876 89999999999997654
No 185
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.27 E-value=1.1e-11 Score=108.70 Aligned_cols=86 Identities=30% Similarity=0.493 Sum_probs=70.5
Q ss_pred CCcccCCCceEEEEEEEcc------------------------CCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEE
Q 009664 417 GEKALKSGANGTEAIELEK------------------------DASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAE 472 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~------------------------~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~ 472 (529)
+..+.++||+++++..... ....++|++++++.||.|||.|.|.+.+.....|.|+
T Consensus 44 d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~ 123 (153)
T cd08676 44 DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLD 123 (153)
T ss_pred CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEE
Confidence 3456788999998743211 1235799999999999999999999987667899999
Q ss_pred EEECCCCCCCeeEEEEEecccccccceeeeEEEc
Q 009664 473 VWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEL 506 (529)
Q Consensus 473 V~D~~~~~~d~lG~~~i~L~~l~~~~~~~~w~~L 506 (529)
|||++ +++||++.++++++.. ...++||+|
T Consensus 124 V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 124 IWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred EEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99998 6899999999999984 446999987
No 186
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.27 E-value=2.1e-11 Score=102.73 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=74.9
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+..++|+++.+ .+...++|+++.++.||.|||.|.|.+.+.....+.|+|||++..++ ++||++.+++.++..+
T Consensus 17 ~~~~dpyv~v~~----~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~ 92 (115)
T cd04040 17 NGKSDPFVKFYL----NGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPE 92 (115)
T ss_pred CCCCCCeEEEEE----CCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCC
Confidence 456789998875 23456899999999999999999999987667899999999998765 7999999999999887
Q ss_pred ceeeeEEEcCCC
Q 009664 498 GEYTDCFELDGT 509 (529)
Q Consensus 498 ~~~~~w~~L~~~ 509 (529)
.....|++|.+.
T Consensus 93 ~~~~~~~~L~~~ 104 (115)
T cd04040 93 ETTELTLPLDGQ 104 (115)
T ss_pred CcEEEEEECcCC
Confidence 778999999863
No 187
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.3e-11 Score=124.64 Aligned_cols=137 Identities=23% Similarity=0.302 Sum_probs=106.6
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhh--hhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKV--LTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
....|+|++++.|..... .+.++.+.+. ...+..+.+++|++++++..+ ..+.+|++.++|+||.|
T Consensus 150 ~~~~G~l~fsl~Yd~~~~----------~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk--~~k~kT~v~r~tlnP~f 217 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELN----------LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK--KGKFKTRVHRKTLNPVF 217 (421)
T ss_pred ceeeeeEEEEEEecccCC----------EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC--CCcceeeeeecCcCCcc
Confidence 466799999999974331 2222222222 122334578999999998876 55789999999999999
Q ss_pred CceEEEEee--cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC------CccEEEEEEEEEeCC
Q 009664 454 NQTFDFVVE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQP 524 (529)
Q Consensus 454 ne~f~f~v~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~~~~ 524 (529)
||+|.|.|. +.....|+++|||.++++. ++||++.++|..+........|.+|... ..|+|.+.++|.|..
T Consensus 218 nEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 218 NETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTA 297 (421)
T ss_pred ccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCC
Confidence 999999975 3467899999999999987 8999999999998777667889999742 237999999999863
No 188
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.23 E-value=2.4e-11 Score=104.05 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=74.9
Q ss_pred cccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEeecCC----CCEEEEEEEECCCCCC-CeeEEEEEecc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDTFGK-DYMGRCILTLT 492 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~----~~~L~i~V~D~~~~~~-d~lG~~~i~L~ 492 (529)
.+..+||+.+++. +..+++|+++. ++.||.|||.|.|.+.+.. ...|.|+|||++.+++ ++||++.++|.
T Consensus 18 ~~~~dpYv~v~~~----~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~ 93 (125)
T cd04051 18 FGKMKVYAVVWID----PSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLK 93 (125)
T ss_pred ccCCceEEEEEEC----CCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHH
Confidence 4567799988752 23578999875 5899999999999997653 6889999999998665 89999999999
Q ss_pred cccccce-----eeeEEEcCC---CCccEEEE
Q 009664 493 RVILEGE-----YTDCFELDG---TKSGKLKL 516 (529)
Q Consensus 493 ~l~~~~~-----~~~w~~L~~---~~~G~i~l 516 (529)
++..... ...||+|.+ ...|.|++
T Consensus 94 ~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 94 DLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred HhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 9987654 368999974 45677753
No 189
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.23 E-value=4.3e-11 Score=101.40 Aligned_cols=91 Identities=16% Similarity=0.264 Sum_probs=75.6
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+.++||+++.+ .+..+++|++++++.||.|||.|.|.+.+. .+.|.|+|||++..++ ++||++.+++.++...
T Consensus 19 ~g~~DPYv~v~~----~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~ 93 (120)
T cd04045 19 VGKIDPYVRVLV----NGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK 93 (120)
T ss_pred CCCcCCEEEEEE----CCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC
Confidence 457789999885 233578999999999999999999998764 4689999999998876 7999999999999876
Q ss_pred ceeeeEEEcCCCCccEEE
Q 009664 498 GEYTDCFELDGTKSGKLK 515 (529)
Q Consensus 498 ~~~~~w~~L~~~~~G~i~ 515 (529)
..+.||.|.++.+++..
T Consensus 94 -~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 94 -NEDGKYVEYDDEEERLK 110 (120)
T ss_pred -CCCceEEecCCCcceee
Confidence 55889999877666554
No 190
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.22 E-value=7.8e-11 Score=100.70 Aligned_cols=85 Identities=25% Similarity=0.378 Sum_probs=72.9
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccC-CCCCccCceEEEEeecC---CCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVND-CLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~---~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
+..+||+.+.+ +.+.++|+++++ +.||.|||.|.|.+.++ ....|.|+|||++.++. ++||++.++|+++
T Consensus 20 ~~~dpyv~v~~-----~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l 94 (124)
T cd04049 20 GKIDPYVIIQC-----RTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94 (124)
T ss_pred CCcCceEEEEE-----CCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHh
Confidence 46779998875 345678888875 89999999999999876 35789999999998865 8999999999999
Q ss_pred cccceeeeEEEcCCC
Q 009664 495 ILEGEYTDCFELDGT 509 (529)
Q Consensus 495 ~~~~~~~~w~~L~~~ 509 (529)
...+..+.|++|...
T Consensus 95 ~~~~~~~~~~~l~p~ 109 (124)
T cd04049 95 FEEGVEPGTAELVPA 109 (124)
T ss_pred hhCCCCcCceEeecc
Confidence 988888999999875
No 191
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.21 E-value=1.2e-10 Score=96.40 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=68.5
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECC-------CCCC-CeeEEEEEec
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD-------TFGK-DYMGRCILTL 491 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~-------~~~~-d~lG~~~i~L 491 (529)
+.++||+++++...+....+.||+++++|.||+|||.|+|.+.+ ...|.+.|||++ ..++ +.+|...+.|
T Consensus 13 ~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~L 90 (118)
T cd08686 13 QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQL 90 (118)
T ss_pred CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEcccccccccccCcccEEEEEEEEE
Confidence 45789999875443333467999999999999999999999973 669999999983 4444 7896666555
Q ss_pred --ccccccceeeeEEEcCCCCccEEEEEEEE
Q 009664 492 --TRVILEGEYTDCFELDGTKSGKLKLHLKW 520 (529)
Q Consensus 492 --~~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 520 (529)
+.+..++....-+.|.+ =+|.++++|
T Consensus 91 d~~~~~~~~~~~~~~~~~~---~~~~~s~~~ 118 (118)
T cd08686 91 DPQSLQTKKWQEKVISMNG---ITVNLSIKF 118 (118)
T ss_pred CHHHhccCCeeEEEEEecC---EEEEEEEeC
Confidence 45544555566677765 255555543
No 192
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.21 E-value=9.3e-11 Score=102.31 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=64.0
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
+.++||+.+++ +.+++||++++++.||+|||.|.|.+.++ ...|.|+|||++.+++ ++||++.+++.++....
T Consensus 20 ~~sDPYV~v~~-----g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 20 TSSDPYVVLTL-----GNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCcCcEEEEEE-----CCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 46789998875 56789999999999999999999999876 7789999999999876 89999999999986543
No 193
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.21 E-value=1.1e-10 Score=99.81 Aligned_cols=94 Identities=23% Similarity=0.384 Sum_probs=75.0
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+..+||+.+++ .+..++||++++++.||.|||.|.|.+.+ .+.|.|+|||++..+. ++||++.++|+++...
T Consensus 19 ~~~~dPyv~v~~----~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 19 SFKPDPYVEVTV----DGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLLGEASLDLSDILKN 92 (125)
T ss_pred CCCCCeEEEEEE----CCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhh
Confidence 345779998875 22347899999999999999999999863 5789999999998865 8999999999999865
Q ss_pred ce-----eeeEEEcCC------CCccEEEEEE
Q 009664 498 GE-----YTDCFELDG------TKSGKLKLHL 518 (529)
Q Consensus 498 ~~-----~~~w~~L~~------~~~G~i~l~~ 518 (529)
.. ...|++|.. ...|++.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 93 HNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred cCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 33 346999952 3368888765
No 194
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.21 E-value=9.6e-11 Score=99.06 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=70.6
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCC--CCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
+.++||+.+++ .+.+.+||+++++ .||.|||+|.|.+.+.. ...|.+.+||++..++ ..+|.+.+.. +..
T Consensus 16 ~~~dpyv~v~~----~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~--~~~ 88 (117)
T cd08383 16 GTRDPYCTVSL----DQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSK--LDL 88 (117)
T ss_pred CCCCceEEEEE----CCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecC--cCC
Confidence 56789998886 2334579999988 99999999999997542 3468888899876544 5677665544 444
Q ss_pred cceeeeEEEcCCC-----CccEEEEEEEE
Q 009664 497 EGEYTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 497 ~~~~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
.+..++||+|.+. ..|+|++++.|
T Consensus 89 ~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 89 GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 5667899999863 37999999875
No 195
>PLN02270 phospholipase D alpha
Probab=99.20 E-value=1.8e-10 Score=122.81 Aligned_cols=129 Identities=22% Similarity=0.420 Sum_probs=104.8
Q ss_pred cceEEEEEEEEecCCCccC------------------CCCCCCcEEEEEEecCCCCeEeccccCCC-CCCeeccEEEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNKD------------------LIGKSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIV 320 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~Wne~f~~~v 320 (529)
-.|.|.|+|.+|++|++.+ ..+.+|||+.+.+. +.+..||+++.+. .||.|+|+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEee
Confidence 3699999999999998631 12467999999997 4567899999885 6999999999998
Q ss_pred ecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcccC
Q 009664 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 394 (529)
Q Consensus 321 ~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 394 (529)
.... ..+.|.|.|.|.++. .+||.+.+|..++..+...+.|+++..... +..+...+|+++++|.|....
T Consensus 84 ah~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~--~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 84 AHMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDK--NPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred ccCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCC--CcCCCCCEEEEEEEEEEcccC
Confidence 7765 589999999998864 699999999999999999999999975431 112233589999999997653
No 196
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.19 E-value=1.4e-10 Score=100.50 Aligned_cols=96 Identities=8% Similarity=0.126 Sum_probs=75.0
Q ss_pred CCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECC-CC----CCCeeEEEEEeccccccc
Q 009664 423 SGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD-TF----GKDYMGRCILTLTRVILE 497 (529)
Q Consensus 423 ~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~-~~----~~d~lG~~~i~L~~l~~~ 497 (529)
++|+.+.+ .+....||+++.++.||.|||.|.|.+..+ -..+.|.|++.+ .. ++++||.+.|+++++...
T Consensus 28 ~~Y~~i~L----d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~ 102 (146)
T cd04013 28 RYYCELCL----DKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSR 102 (146)
T ss_pred CceEEEEE----CCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCC
Confidence 47777664 233446999999999999999999976433 357999997543 22 237999999999999987
Q ss_pred ceeeeEEEcCCC-------------CccEEEEEEEEEeC
Q 009664 498 GEYTDCFELDGT-------------KSGKLKLHLKWMPQ 523 (529)
Q Consensus 498 ~~~~~w~~L~~~-------------~~G~i~l~~~~~~~ 523 (529)
...++||+|.+. ..++||++++|++.
T Consensus 103 ~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 103 QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 778999999742 12699999999985
No 197
>PLN02223 phosphoinositide phospholipase C
Probab=99.18 E-value=4.3e-10 Score=115.40 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=85.2
Q ss_pred ceEEEEEEEEecCCCc-----cCCCCCCCcEEEEEEec--CCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEE
Q 009664 261 VGTLEVKLVQAKGLTN-----KDLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~ 333 (529)
...|.|+|+.|.+++. .+.....||||++.+.. .+...++|++..|+.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3679999999998751 12234679999999963 2334577888899999999999999998887778999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|+|..+.|+++|++.+|+..|..|- .+++|.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~ 518 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLY 518 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEecc
Confidence 9998888999999999999999876 345664
No 198
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.16 E-value=2.4e-10 Score=97.16 Aligned_cols=72 Identities=31% Similarity=0.421 Sum_probs=60.7
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeec-CCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
+.+++|+++++ +.+++||++++++.||+|||.|.|.... .....|.|+|||++..++ ++||++.++|.....
T Consensus 46 g~~DPYVkV~~-----~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 46 TSTDGYVKVFF-----GGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCeEEEEEE-----CCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 46689999885 3348899999999999999999997533 357799999999999866 899999999997653
No 199
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.14 E-value=3.3e-10 Score=90.47 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=72.9
Q ss_pred HHHHHHHch-hh-HHHHHHHHHHhHHHHHhh-cCCCccceEEEEEEecCCCCCeEeeEEEEec-CCCeEEEEEEEEEecC
Q 009664 75 NHHLEKLWP-YV-NEAASELIKSSVEPVLEQ-YRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELEMQWDAN 150 (529)
Q Consensus 75 N~~l~~~Wp-~~-~~~~~~~~~~~~~~~l~~-~~p~~i~~~~~~~~~lG~~~P~i~~i~~~~~-~~~~~~ld~~~~~~~~ 150 (529)
|.++.+++- +. .+++.+.+++.++..|++ .+|++++++++++++||+.||.|+++++.+. .++++.+|+|+.|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 677888765 33 357899999999999998 4699999999999999999999999999865 4456999999999999
Q ss_pred ceEEEEEEe
Q 009664 151 SSIILAIKT 159 (529)
Q Consensus 151 ~~i~l~~~~ 159 (529)
..+.++.+.
T Consensus 81 ~~l~l~t~l 89 (91)
T PF10296_consen 81 FSLTLETKL 89 (91)
T ss_pred eEEEEEEEE
Confidence 988887763
No 200
>PLN02952 phosphoinositide phospholipase C
Probab=99.13 E-value=8.6e-10 Score=115.69 Aligned_cols=104 Identities=24% Similarity=0.365 Sum_probs=85.8
Q ss_pred ceEEEEEEEEecCCCcc------CCCCCCCcEEEEEEec--CCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 009664 261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v 332 (529)
...|.|+|+.|.+++.. +.....||||++.+-. .+..+.+|+++.++.||.|||+|.|.+..+.-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 1123459999999863 334567899999999999999999999887766899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
||+|..+.++++|++.+|+..|..|. .|++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCc
Confidence 99998888999999999999999876 478885
No 201
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.12 E-value=1.7e-11 Score=125.41 Aligned_cols=131 Identities=34% Similarity=0.586 Sum_probs=106.4
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC----------------------------eEeccccCCCCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK----------------------------TKKSKTINNDLNP 310 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~----------------------------~~kT~~~~~t~nP 310 (529)
.|.-.+.|.+.+|++|.++|.+|.+|||+...+.+...+ .+-|++++.|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 345566788899999999999999999999987542110 2448888999999
Q ss_pred eeccEEEEEEecCCCCEEEEEEEECCCC---------------------------------CC---CceeEEEEEECccc
Q 009664 311 IWNEHFEFIVEDESTQHLVVRIYDDEGI---------------------------------QS---SELIGCAQVRLCEL 354 (529)
Q Consensus 311 ~Wne~f~~~v~~~~~~~l~i~v~d~~~~---------------------------------~~---d~~lG~~~i~l~~l 354 (529)
.|+|.|.|.+.+..+..+.+.+||+|.- +. |||+|+..+|+.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 9999999999999889999999998741 22 89999999999998
Q ss_pred CCCceeeEEEEcccccccccCCccccEEEEEEEEEEccc
Q 009664 355 EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (529)
Q Consensus 355 ~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~ 393 (529)
... +.+.||.|+++. ..++.+|++++.+......+
T Consensus 271 P~~-Gld~WFkLepRS---~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 271 PPD-GLDQWFKLEPRS---DKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred Ccc-hHHHHhccCccc---ccccccceEEEEEEEeeecc
Confidence 653 468999998764 25678899999998875543
No 202
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.10 E-value=9.7e-10 Score=94.47 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=78.7
Q ss_pred cccCCCceEEEEEEEcc-CCeeEeeecccCCC-CCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEK-DASQKRREVVNDCL-NPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~-~~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~ 496 (529)
.+..++|+++++..... ...++||++++++. ||.|||.|.|.+..+....|.++|||++..++++||++.++++++..
T Consensus 22 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~ 101 (128)
T cd00275 22 GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQ 101 (128)
T ss_pred CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcC
Confidence 34667999999766554 56789999988776 99999999999987666789999999998755899999999999843
Q ss_pred cceeeeEEEcCC-----CCccEEEEEEEE
Q 009664 497 EGEYTDCFELDG-----TKSGKLKLHLKW 520 (529)
Q Consensus 497 ~~~~~~w~~L~~-----~~~G~i~l~~~~ 520 (529)
. .+|++|.+ ...|.|.++++.
T Consensus 102 g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 102 G---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred c---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 2 47888864 235788777754
No 203
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.10 E-value=2.3e-10 Score=97.59 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=63.4
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.++||+++++. ......||++++++.||.|||.|+|.+..+..+.|.|+|||++..++ ++||++.++|++..
T Consensus 16 d~~g~~DPYv~v~~~---~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 16 DPNGKSDPYLKIKLG---KKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCCCCCcEEEEEEC---CeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 345678899998852 12234688888999999999999999877777899999999998865 89999999999876
Q ss_pred c
Q 009664 496 L 496 (529)
Q Consensus 496 ~ 496 (529)
.
T Consensus 93 ~ 93 (124)
T cd04037 93 F 93 (124)
T ss_pred c
Confidence 4
No 204
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.09 E-value=1.3e-10 Score=123.42 Aligned_cols=89 Identities=29% Similarity=0.437 Sum_probs=79.5
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCe--EeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~--~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
-..+|.+++|-+|.+.|.+|.+|||+++.++ ++. -++..+.+|+||+|.+.|++....+....+.++|||+|..+
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 3667999999999999999999999999997 333 56777899999999999999888777778999999999999
Q ss_pred CCceeEEEEEECcc
Q 009664 340 SSELIGCAQVRLCE 353 (529)
Q Consensus 340 ~d~~lG~~~i~l~~ 353 (529)
+|+.+|+..++|..
T Consensus 690 ~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 690 QDEKIGETTIDLEN 703 (1105)
T ss_pred ccchhhceehhhhh
Confidence 99999999999875
No 205
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.06 E-value=3.6e-10 Score=94.37 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=62.1
Q ss_pred CcccCCCceEEEEEEEc-cCCeeEeeecccCCCCCccCceEEEEeecC----CCCEEEEEEEECCCCCC-CeeEEEEEec
Q 009664 418 EKALKSGANGTEAIELE-KDASQKRREVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDTFGK-DYMGRCILTL 491 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~-~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~L~i~V~D~~~~~~-d~lG~~~i~L 491 (529)
..+.++||+++++.... .....+||++++++.||+|| .|.|.+.+. ....|.|+|||++..++ ++||++.+++
T Consensus 17 ~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l 95 (110)
T cd04047 17 FFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTL 95 (110)
T ss_pred CCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEH
Confidence 34578899999864322 22356899999999999999 688876432 25789999999999876 8999999999
Q ss_pred ccccc
Q 009664 492 TRVIL 496 (529)
Q Consensus 492 ~~l~~ 496 (529)
+++..
T Consensus 96 ~~l~~ 100 (110)
T cd04047 96 DELLK 100 (110)
T ss_pred HHHhc
Confidence 99973
No 206
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.96 E-value=8.3e-09 Score=108.20 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=84.8
Q ss_pred ceEEEEEEEEecCCCcc------CCCCCCCcEEEEEEec--CCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 009664 261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v 332 (529)
..+|.|+|+.+.+++.. +.....||||++.+-. .+..+.+|++..++.||.|||+|.|.+.-++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 36899999999987421 2223579999999863 223457888999999999999999999887777899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
+|+|...+|+++|+..+|+..|..|-. .++|..
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~ 580 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFN 580 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc---eEeccC
Confidence 999988899999999999999988754 356643
No 207
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.95 E-value=3.3e-09 Score=107.99 Aligned_cols=217 Identities=20% Similarity=0.243 Sum_probs=141.0
Q ss_pred eEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC----CCCCceeEEEEEECcccCCCceeeEEEEcccccccc
Q 009664 298 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373 (529)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~ 373 (529)
..+|.++.+.+||.|.+.|.+.......|.++++++|-+. ....+|+|++...+..+........-+.+.+
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~----- 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP----- 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-----
Confidence 4588999999999999998888776677899999999764 3467899999999998865443322222221
Q ss_pred cCCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhhhhcCCcccCCCceEEEEEE-EccCCeeEeeecccCCCCCc
Q 009664 374 RDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIE-LEKDASQKRREVVNDCLNPI 452 (529)
Q Consensus 374 ~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~kT~v~~~t~nP~ 452 (529)
......|+|.+...-..... .-....+.. .++...+..+.+++|+.++-.. .+.....++|+++++++||.
T Consensus 117 ~~~~~~g~iti~aee~~~~~-----~~~~~~~~~---~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~ 188 (529)
T KOG1327|consen 117 GKNAGSGTITISAEEDESDN-----DVVQFSFRA---KNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQ 188 (529)
T ss_pred CccCCcccEEEEeecccccC-----ceeeeeeee---eecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCc
Confidence 12345677777665432110 000011111 1222334556778999887543 33445678999999999999
Q ss_pred cCceEEEEeec----CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC---------CccEEEE-E
Q 009664 453 WNQTFDFVVED----GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT---------KSGKLKL-H 517 (529)
Q Consensus 453 wne~f~f~v~~----~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~---------~~G~i~l-~ 517 (529)
|.+ |.....+ ..+..+.+.|||++..++ +++|++.-+++++........|...+.. .+|.+.+ .
T Consensus 189 w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~ 267 (529)
T KOG1327|consen 189 WAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQEPGSPNQIMLINPKKKAKKKSYKNSGQLILDR 267 (529)
T ss_pred ccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcccCCcccccccChhhhhhhhcccccceEEehh
Confidence 996 3443322 235679999999999888 8999999999998653333333333221 1466665 5
Q ss_pred EEEEeCCCCCC
Q 009664 518 LKWMPQPIYRD 528 (529)
Q Consensus 518 ~~~~~~~~~~~ 528 (529)
++-.-.++|+|
T Consensus 268 ~~~~~~~sfld 278 (529)
T KOG1327|consen 268 FTSLDQYSFLD 278 (529)
T ss_pred eeehhhhhHHH
Confidence 55555566654
No 208
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.4e-09 Score=110.25 Aligned_cols=97 Identities=23% Similarity=0.546 Sum_probs=79.9
Q ss_pred cCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCC------------CCCe
Q 009664 416 NGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF------------GKDY 483 (529)
Q Consensus 416 ~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~------------~~d~ 483 (529)
.+..|.++||+.+.+ ++.++||+++...+||+|||.|.|.+++ ..+.|.+.|||.+.. ++|+
T Consensus 310 kdktg~sdpyvt~qv-----~ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dlksklrqkl~resddf 383 (1283)
T KOG1011|consen 310 KDKTGKSDPYVTAQV-----GKTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSKLRQKLTRESDDF 383 (1283)
T ss_pred cccCCCCCCcEEEee-----cccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccHHHHHHHHhhhccccc
Confidence 456778889987764 7778899999999999999999999997 567899999998732 3489
Q ss_pred eEEEEEecccccccceeeeEEEcCC-----CCccEEEEEEEE
Q 009664 484 MGRCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKW 520 (529)
Q Consensus 484 lG~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~ 520 (529)
+|+..|.+..+ .++++-||+|+. +.+|-|+|.+..
T Consensus 384 lgqtvievrtl--sgemdvwynlekrtdksavsgairlhisv 423 (1283)
T KOG1011|consen 384 LGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHISV 423 (1283)
T ss_pred ccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEEE
Confidence 99999999887 467899999974 357888876554
No 209
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.91 E-value=1.9e-08 Score=105.30 Aligned_cols=104 Identities=23% Similarity=0.310 Sum_probs=83.9
Q ss_pred ceEEEEEEEEecCCC----cc--CCCCCCCcEEEEEEe--cCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 009664 261 VGTLEVKLVQAKGLT----NK--DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v 332 (529)
...|+|+|+.|.++. .. +.....||||++.+. +.+..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 367999999998753 11 122457999999996 2334567899999999999999999998887767899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
+|+|..+.++++|++.+|+..|..|-. .++|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~ 562 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLH 562 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc---eEEcc
Confidence 999987889999999999999988754 35664
No 210
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.91 E-value=9.2e-09 Score=107.78 Aligned_cols=121 Identities=22% Similarity=0.360 Sum_probs=93.1
Q ss_pred EEEEEEEEecCCCccC----CCCCCCcEEEEEEec--CCCCeEecc-ccCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 009664 263 TLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRP--LPEKTKKSK-TINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d----~~g~~dpyv~v~~~~--~~~~~~kT~-~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~ 335 (529)
+|.|+|+.+.++...- ....+|||+.+.+-. .+....+|+ +..|+-||.|+|+|+|.+..+.-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999766532 224579999999863 223467888 568899999999999999998877899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
|..++|||+|+..+|+..|..|-.+ ++|... ....-...+|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~---~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSR---EGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecCC---CCccccceeEEEEEEEe
Confidence 9999999999999999999887644 455422 11223445677777664
No 211
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.90 E-value=5.5e-09 Score=83.26 Aligned_cols=84 Identities=24% Similarity=0.444 Sum_probs=69.5
Q ss_pred EEEEEEEecCCCccC---CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 264 LEVKLVQAKGLTNKD---LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 264 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
|.|+|..|+++...+ ..+++|||+.+.++ +..+.||++ +.||.|||+|.|.+.. ...+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCC-Ce
Confidence 579999999999877 67889999999997 334778876 5899999999999943 5689999999865 35
Q ss_pred CceeEEEEEECcccC
Q 009664 341 SELIGCAQVRLCELE 355 (529)
Q Consensus 341 d~~lG~~~i~l~~l~ 355 (529)
.-.+|..-+.++++.
T Consensus 73 ~~Pi~llW~~~sdi~ 87 (109)
T cd08689 73 PVPVGLLWLRLSDIA 87 (109)
T ss_pred ecceeeehhhHHHHH
Confidence 567899888888874
No 212
>PLN02228 Phosphoinositide phospholipase C
Probab=98.90 E-value=2.2e-08 Score=104.57 Aligned_cols=123 Identities=19% Similarity=0.254 Sum_probs=93.9
Q ss_pred eEEEEEEEEecCCCc---c---CCCCCCCcEEEEEEec--CCCCeEeccccCCCCCCee-ccEEEEEEecCCCCEEEEEE
Q 009664 262 GTLEVKLVQAKGLTN---K---DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVRI 332 (529)
Q Consensus 262 g~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~W-ne~f~~~v~~~~~~~l~i~v 332 (529)
..|+|+|++|.+|+. . +.....||||++.+.+ .+...++|++++++.||.| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 1223479999999863 2345679999999999999 99999999887767899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
+|+|..+.|+++|++.+|+..|..|-. .++|.... ...-..++|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~---G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA---GKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC---CCCCCCeEEEEEEEEcC
Confidence 999988889999999999999988754 45664321 11223467888887764
No 213
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.83 E-value=2e-08 Score=100.98 Aligned_cols=122 Identities=25% Similarity=0.441 Sum_probs=100.5
Q ss_pred eEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCCCeEeccccCCCCCCeec-cEEEEEEecC--CCCEEEEEEEECCC
Q 009664 262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN-EHFEFIVEDE--STQHLVVRIYDDEG 337 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wn-e~f~~~v~~~--~~~~l~i~v~d~~~ 337 (529)
|.|.|+|..|++|+-+|.. ...|.||.+.+. ...+||.+..+++||.|| +.|.|.|.+. .+..|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 6788999999999998854 467999999997 778999999999999999 4689998654 46689999999999
Q ss_pred CCCCceeEEEEEECcccC----------CCceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 338 IQSSELIGCAQVRLCELE----------PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
.+.+|-||.+.++++.|. .+.....|+++... -...+|+|.+-+..--+
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-----ihgirgeinvivkvdlf 138 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-----IHGIRGEINVIVKVDLF 138 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-----cccccceeEEEEEEeeh
Confidence 999999999999998872 23456789998643 25678999877655433
No 214
>PLN02270 phospholipase D alpha
Probab=98.74 E-value=6.3e-08 Score=103.80 Aligned_cols=100 Identities=16% Similarity=0.278 Sum_probs=85.4
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCC-CCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~ 498 (529)
+.+++|+.|.+ .+...-||+++.+. .||+|||.|...|.... ..++|.|+|.+.+|..+||.+.||..+++...
T Consensus 45 ~~~~~y~tv~~----~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~ 119 (808)
T PLN02270 45 GESQLYATIDL----EKARVGRTRKIENEPKNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRAYIPVEEILDGE 119 (808)
T ss_pred CCCCceEEEEe----CCcEEEEEeecCCCCCCCccccceEEeeccCc-ceEEEEEecCCccCceEEEEEEEEHHHhcCCC
Confidence 46779998876 45567899999874 69999999999997654 67999999999999999999999999999988
Q ss_pred eeeeEEEcCCC------CccEEEEEEEEEeCC
Q 009664 499 EYTDCFELDGT------KSGKLKLHLKWMPQP 524 (529)
Q Consensus 499 ~~~~w~~L~~~------~~G~i~l~~~~~~~~ 524 (529)
.+++||++.+. +..+|+++++|+|+.
T Consensus 120 ~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 120 EVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 89999999753 235999999999863
No 215
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.73 E-value=6.6e-09 Score=106.93 Aligned_cols=97 Identities=31% Similarity=0.478 Sum_probs=84.5
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC----CeEeccccCCCCCCeeccEEEEEEecC----CCCEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----KTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV 330 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~----~~~~l~i 330 (529)
.+...|.|.|+.|+++.+-|.+|.+||||++.+.|... ...+|+++.+|+||+|+|+|+|.|... .+..+.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 46678899999999999999999999999999985332 357999999999999999999998643 2447999
Q ss_pred EEEECCCCCCCceeEEEEEECcccC
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELE 355 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~ 355 (529)
.|.|+|-.+.+||-|++.+.|+++.
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EeeccceecccccchHHHHhhCCCC
Confidence 9999999999999999999998874
No 216
>PLN02223 phosphoinositide phospholipase C
Probab=98.71 E-value=9e-08 Score=98.57 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=77.5
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 499 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~ 499 (529)
..++|++|.+........++||++..++.||+|||.|+|.+..|.-+.|.|+|+|+|..++ +++|+..+|++.+...
T Consensus 434 ~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~G-- 511 (537)
T PLN02223 434 KPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEG-- 511 (537)
T ss_pred CCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCC--
Confidence 4568999998766666667788888889999999999999998888999999999998765 8999999999998654
Q ss_pred eeeEEEcCCC-----CccEEEEEEEE
Q 009664 500 YTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 500 ~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
.++.+|.+. ....+.++++|
T Consensus 512 -yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 512 -IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred -ceeEeccCCCcCCCCCceEEEEEEe
Confidence 356677543 23455666665
No 217
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.70 E-value=3.2e-08 Score=84.29 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=63.9
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCC--CccCceEEEEeec-----------------------CCCCEEEEEEEE
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLN--PIWNQTFDFVVED-----------------------GLHDMLIAEVWD 475 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~n--P~wne~f~f~v~~-----------------------~~~~~L~i~V~D 475 (529)
.+|+|+++.+... ...+++|.+.+++.| |+||+.|.|++.- .....|.++|||
T Consensus 24 ~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD 101 (133)
T cd08374 24 MSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWD 101 (133)
T ss_pred ccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEE
Confidence 4789999986554 466789999999999 9999999998754 135689999999
Q ss_pred CCCCCC-CeeEEEEEecccccccc
Q 009664 476 HDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 476 ~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
.|.++. |+||++.++|+.+.+..
T Consensus 102 ~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 102 NDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred CcccCCCCcceEEEEEhhhccccc
Confidence 999876 89999999999987654
No 218
>PLN02352 phospholipase D epsilon
Probab=98.70 E-value=1.4e-07 Score=100.86 Aligned_cols=121 Identities=14% Similarity=0.315 Sum_probs=92.5
Q ss_pred cceEEEEEEEEecCCCcc----CC-CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNK----DL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD 334 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~----d~-~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d 334 (529)
-.|.|.++|.+|+.+... +. ....|||+.+.+. +.+..|| .+..||.|+|+|.+.+.......+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 469999999999844322 11 1123999999997 3456777 556699999999999877654579999988
Q ss_pred CCCCCCCceeEEEEEECcccCCCce-eeEEEEcccccccccCCccc-cEEEEEEEEEEcccC
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDTKYR-GQVHLELLYCPFGME 394 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~-G~i~l~l~~~p~~~~ 394 (529)
...+||.+.+|..++..+.. .+.|+++..... .... .+|+++++|.|....
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENG----KPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC----CCCCCCEEEEEEEEEEhhhC
Confidence 26799999999999988866 899999975432 1122 599999999998754
No 219
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.68 E-value=8.7e-08 Score=99.96 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=94.4
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEec---CCCCeEeccccCCCCCCeec-cEEEEEEecCCCCEEEEEEEECCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP---LPEKTKKSKTINNDLNPIWN-EHFEFIVEDESTQHLVVRIYDDEG 337 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~~~~~t~nP~Wn-e~f~~~v~~~~~~~l~i~v~d~~~ 337 (529)
-.|.|.|+.|++|+... .|-..||+.+.+.. +.+..++|.++.|++||+|| |.|+|.+.++.-..|+|.|+|.|-
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46789999999999543 35567999999862 22345666677999999999 999999999987899999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEccc
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~ 393 (529)
++...|||++.+|+..+..|-. ..+|.... .+.-....|.+.+...|..+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y---SEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNGY---SEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccCc---hhhhhhhhheeeeEeccccC
Confidence 9988899999999998876642 23443211 11223356777777777653
No 220
>PLN02952 phosphoinositide phospholipase C
Probab=98.66 E-value=1.4e-07 Score=99.33 Aligned_cols=96 Identities=20% Similarity=0.314 Sum_probs=76.9
Q ss_pred CCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccccee
Q 009664 422 KSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEY 500 (529)
Q Consensus 422 ~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~ 500 (529)
.++|++|.+........++||+++.++.||+|||.|+|.+..+.-+.+.|+|+|+|..++ +++|+..+|++.+...-
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 468999987766555677899999999999999999999988877889999999998765 89999999999996553
Q ss_pred eeEEEcCC---CCccEEEEEEEE
Q 009664 501 TDCFELDG---TKSGKLKLHLKW 520 (529)
Q Consensus 501 ~~w~~L~~---~~~G~i~l~~~~ 520 (529)
+|++|.+ ..-+.++|-+.+
T Consensus 575 -R~VpL~~~~G~~l~~a~Llv~f 596 (599)
T PLN02952 575 -RSVPLHDKKGEKLKNVRLLMRF 596 (599)
T ss_pred -eeEeCcCCCCCCCCCEEEEEEE
Confidence 5889963 333455554443
No 221
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.66 E-value=1.2e-07 Score=76.72 Aligned_cols=82 Identities=32% Similarity=0.521 Sum_probs=68.1
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc-ccc
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI-LEG 498 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~-~~~ 498 (529)
..++|+.+.+.. ...++|+++.++.||.||+.|.|.+.......+.++|||++..+. .++|++.+++.++. ...
T Consensus 19 ~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~ 94 (102)
T cd00030 19 KSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGK 94 (102)
T ss_pred CCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCC
Confidence 556888777532 467899999999999999999999986567789999999998764 89999999999998 555
Q ss_pred eeeeEEEc
Q 009664 499 EYTDCFEL 506 (529)
Q Consensus 499 ~~~~w~~L 506 (529)
...+|++|
T Consensus 95 ~~~~~~~l 102 (102)
T cd00030 95 EGELWLPL 102 (102)
T ss_pred cCcceecC
Confidence 66888875
No 222
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.64 E-value=4.9e-08 Score=100.81 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=91.9
Q ss_pred EEecCCCccCCCCCCCcEEEEEEec-CCCCeEeccccCCCCCCeeccEEEEEEecC---------------CCCEEEEEE
Q 009664 269 VQAKGLTNKDLIGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQHLVVRI 332 (529)
Q Consensus 269 ~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------------~~~~l~i~v 332 (529)
+.++++-+.+ ++.+|||+++.... ...+..+|+++++|.+|.|+|.|+|.+... ..-.|++.+
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 4444555544 45699999999862 222457999999999999999999998644 234688999
Q ss_pred EE-CCCCCCCceeEEEEEECcccCCCceeeEEEEccccccc--ccCCccccEEEEEEEEEE
Q 009664 333 YD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV--QRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 333 ~d-~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~--~~~~~~~G~i~l~l~~~p 390 (529)
|+ .+....++|+|++.+++..+........||.|++.... ..++...|.+++.++|..
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 99 56666699999999999998877777899999876432 223456689999999963
No 223
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.62 E-value=1.5e-07 Score=76.43 Aligned_cols=77 Identities=31% Similarity=0.556 Sum_probs=62.9
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 499 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~ 499 (529)
..++|+++++.... ...++|+++.++.||.|||.|.|.+..+....|.|+|||++..+. ..+|.+.+++.++.....
T Consensus 20 ~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 20 KSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 45688888763221 357899999999999999999999987657899999999998764 799999999999866544
No 224
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.59 E-value=2e-07 Score=95.22 Aligned_cols=173 Identities=25% Similarity=0.369 Sum_probs=112.2
Q ss_pred EEEEEEEEEecCCCCCCcceeEEEEeccceeeeEEEEEcccccccCCcchH-HHHHHHHHHHhhhcccccccccCCC--C
Q 009664 174 FTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSD-SIEATIHDAIEDSITWPVRKIVPIL--P 250 (529)
Q Consensus 174 ~~g~~rv~l~pl~~~~P~~~~v~~~f~~~p~l~f~l~~~g~~~~~~P~l~~-~~~~~i~~~i~~~~~~P~~~~ipl~--~ 250 (529)
-.|+..++..-+.|.|-....+.|.|++.+.+.|.++..+.. .+.+.+ .+.+...+.+..+.. -.....++. +
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~---~~~l~~~dflg~~~c~l~~ivs-~~~~~~~l~~~~ 116 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSR---TPDLSSADFLGTAECTLSQIVS-SSGLTGPLLLKP 116 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCc---cCCcchhcccceeeeehhhhhh-hhhhhhhhhccc
Confidence 346777888878888887788999999999999999887543 111111 111111111111110 000011110 0
Q ss_pred CCccccccCcceEEE-------------EEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeecc
Q 009664 251 GDYSELELKPVGTLE-------------VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNE 314 (529)
Q Consensus 251 ~~~~~~~~~~~g~L~-------------V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne 314 (529)
+ .....|.+. .-..+|++|.++|..+++|||..++-..+.+ ..++|++.++++||.|.+
T Consensus 117 ~-----~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~ 191 (529)
T KOG1327|consen 117 G-----KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP 191 (529)
T ss_pred C-----ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc
Confidence 0 001112222 2235689999999999999999888653222 258999999999999998
Q ss_pred EEEEEEecCC----CCEEEEEEEECCCCCCCceeEEEEEECcccCC
Q 009664 315 HFEFIVEDES----TQHLVVRIYDDEGIQSSELIGCAQVRLCELEP 356 (529)
Q Consensus 315 ~f~~~v~~~~----~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~ 356 (529)
|.+.....+ ...+.+.+||++..++++++|.+..++.++..
T Consensus 192 -~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 192 -FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred -cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 666654432 35788999999998899999999999998864
No 225
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.56 E-value=4.8e-08 Score=76.94 Aligned_cols=67 Identities=28% Similarity=0.548 Sum_probs=54.5
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEE
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCI 488 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~ 488 (529)
+..++|+++.+... ...+++|++++++.+|.|||.|.|.+..+..+.|.|+|||++..++ ++||++.
T Consensus 18 ~~~~~yv~v~~~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 18 GKPDPYVRVSVNGS--ESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp SSBEEEEEEEEETT--TCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred Ccccccceeeccee--eeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 35557777765222 2267999999999999999999999887777779999999999885 8999873
No 226
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.52 E-value=6.6e-08 Score=104.55 Aligned_cols=108 Identities=26% Similarity=0.407 Sum_probs=91.5
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEE---EecCCCCEEEEEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI---VEDESTQHLVVRIYD 334 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~---v~~~~~~~l~i~v~d 334 (529)
..|+|.|-|..|++|.-..-+..+||||+.|+.|+..+ +.||+++++|.||.|||...+. ......+.|.+.||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 36899999999999965554567999999999977654 6899999999999999987665 223445789999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
.+....+.++|.+.++|.++...++...||.|.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 999999999999999999988777777999985
No 227
>PLN02228 Phosphoinositide phospholipase C
Probab=98.49 E-value=8.5e-07 Score=92.90 Aligned_cols=103 Identities=22% Similarity=0.269 Sum_probs=83.8
Q ss_pred CCCceEEEEEEEccCCeeEeeecccCCCCCcc-CceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce
Q 009664 422 KSGANGTEAIELEKDASQKRREVVNDCLNPIW-NQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 499 (529)
Q Consensus 422 ~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~ 499 (529)
.++|++|.+........++||++++++.||+| ||.|+|.+..+.-+-|.|.|+|++..+. +++|+..+|++.|...
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~G-- 535 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSG-- 535 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCC--
Confidence 56899998876655667789999988899999 9999999988888899999999987654 8999999999999544
Q ss_pred eeeEEEcCCC-----CccEEEEEEEEEeCCCCC
Q 009664 500 YTDCFELDGT-----KSGKLKLHLKWMPQPIYR 527 (529)
Q Consensus 500 ~~~w~~L~~~-----~~G~i~l~~~~~~~~~~~ 527 (529)
.+..+|.+. ....+.+++.+.+...|+
T Consensus 536 -YR~VpL~~~~G~~l~~atLfv~~~~~~~~~~~ 567 (567)
T PLN02228 536 -VRAVRLHDRAGKAYKNTRLLVSFALDPPYTFR 567 (567)
T ss_pred -eeEEEccCCCCCCCCCeEEEEEEEEcCccccC
Confidence 345566432 346788899998888874
No 228
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.48 E-value=7.9e-07 Score=93.52 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=76.2
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 499 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~ 499 (529)
..++|++|.+........++||++..++.||+|||.|+|.+.-|.-+.|.|+|+|++..++ +++|+..+|++.|...-
T Consensus 495 ~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy- 573 (598)
T PLN02230 495 PPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI- 573 (598)
T ss_pred CCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc-
Confidence 3578999998766555566799998899999999999999988888999999999998654 89999999999996543
Q ss_pred eeeEEEcCCC-----CccEEEEEEEE
Q 009664 500 YTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 500 ~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
+..+|.+. ....+.+++.|
T Consensus 574 --R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 574 --HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred --ceEeccCCCcCCCCCCeeEEEEEe
Confidence 45666543 13355556554
No 229
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.47 E-value=8.9e-07 Score=93.02 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=76.0
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 499 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~ 499 (529)
..++|++|.+........++||+++.++.||+|||.|+|.+..+.-+-|.|.|+|+|..+. +++|+..+|++.+...
T Consensus 478 ~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~G-- 555 (581)
T PLN02222 478 PPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQG-- 555 (581)
T ss_pred CCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCc--
Confidence 4568999988666555667899999999999999999999988888899999999987654 8999999999998654
Q ss_pred eeeEEEcCCC-----CccEEEEEEEE
Q 009664 500 YTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 500 ~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
.+..+|.+. ....+.+.+.|
T Consensus 556 -yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 556 -IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred -cceEEccCCCcCCCCCeeEEEEEEe
Confidence 345666543 23355555554
No 230
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.42 E-value=8.3e-07 Score=93.42 Aligned_cols=101 Identities=22% Similarity=0.363 Sum_probs=79.8
Q ss_pred cccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
+...+|+++|.+..+.....+.+|+++. ++-||.|+|.|+|.+..|.-+-|.|.|+|++..++ |++|+..+|++++..
T Consensus 638 ~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~ 717 (746)
T KOG0169|consen 638 GEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQ 717 (746)
T ss_pred cccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhC
Confidence 3467799999876666666778999554 67899999999999999999999999999999885 999999999999965
Q ss_pred cceeeeEEEcCCC-----CccEEEEEEEEEe
Q 009664 497 EGEYTDCFELDGT-----KSGKLKLHLKWMP 522 (529)
Q Consensus 497 ~~~~~~w~~L~~~-----~~G~i~l~~~~~~ 522 (529)
.- +-.+|.+. ....+.+++.|.+
T Consensus 718 Gy---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 718 GY---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred ce---eeeeecCCCCccccceeEEEEEEEec
Confidence 53 34555442 3456667777654
No 231
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.42 E-value=2e-07 Score=99.81 Aligned_cols=216 Identities=19% Similarity=0.210 Sum_probs=134.2
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC---------CCCEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVV 330 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------~~~~l~i 330 (529)
..-.+++.+.+|+.|...|..+.+|||+.+... ++.+.|.++.+|+||.|+++..|.-.+. .-..+.+
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~---~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~ 280 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFC---GQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF 280 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcc---cccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence 345678888999999999999999999999987 7788999999999999999887752111 1236889
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcccC---------C---CCC
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME---------N---VFT 398 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~---------~---~~~ 398 (529)
++||.++.+.++++|++.....-... ...-.|+++-+ ++...|.+.++......+.. . ..+
T Consensus 281 e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r------g~~l~gd~l~a~eliq~~~~i~~p~~~~~~~~~~vp 353 (1105)
T KOG1326|consen 281 EVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR------GAFLDGDVLIAAELIQIGKPIPQPPPQREIIFSLVP 353 (1105)
T ss_pred EeehhhhhchHHhhcccccceEEEec-CCccceEEeec------ccccccchhHHHHHHhhcCCCCCCCcccccceeccc
Confidence 99999999999999998765443222 44567888743 34455554443321111100 0 000
Q ss_pred CCCCCCCcchh-------hhhhhhcCCcccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEee---c--CC
Q 009664 399 NPFAPNFSMTS-------LEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVE---D--GL 465 (529)
Q Consensus 399 ~~~~~~~~~~~-------l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~---~--~~ 465 (529)
....+.+.... ++......-.....|-+ +.. .+.++.++..+. .-.||.|+..|-+..- + ..
T Consensus 354 ~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~----~~e-~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y 428 (1105)
T KOG1326|consen 354 KKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPAL----LVE-FGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELY 428 (1105)
T ss_pred cCCCcceeeeeeehhhhhhcccccccccccCCcce----eEe-eCCceEeeeeehhhhhCCCCceeEEEEEEeccchHhh
Confidence 00111111111 11111111111122222 122 344444555554 4779999987666442 2 24
Q ss_pred CCEEEEEEEECCCCCC-CeeEEEEEe
Q 009664 466 HDMLIAEVWDHDTFGK-DYMGRCILT 490 (529)
Q Consensus 466 ~~~L~i~V~D~~~~~~-d~lG~~~i~ 490 (529)
...+.++|.|.+.+|. ...|++.+.
T Consensus 429 ~ppl~akvvd~~~fg~~~v~g~c~i~ 454 (1105)
T KOG1326|consen 429 MPPLNAKVVDLRQFGRMEVVGQCKIL 454 (1105)
T ss_pred CccceeEEEecccccceeehhhhcch
Confidence 5689999999999987 899998876
No 232
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.36 E-value=3.3e-07 Score=99.34 Aligned_cols=122 Identities=17% Similarity=0.179 Sum_probs=92.0
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcc--hhhhhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSM--TSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
++..|+|.+++.|.-. .+.+ .-++.+.....+..+++|++.++...-....++||+++++|+||.|
T Consensus 1509 ~~iggqV~LsIsY~~~------------~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTf 1576 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYNNG------------TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTF 1576 (1639)
T ss_pred cccCceEEEEEEEcCc------------eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCch
Confidence 4566899999999721 1111 1111111112334678999999998887888999999999999999
Q ss_pred CceEEEE---eecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 454 NQTFDFV---VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 454 ne~f~f~---v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
||...+. ........|.++||..+.... .++|.+.|+|.++...++..+||+|...
T Consensus 1577 nE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1577 NEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred hhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 9988776 233356789999999988765 7999999999999887777899999764
No 233
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.26 E-value=1.8e-06 Score=90.50 Aligned_cols=96 Identities=22% Similarity=0.374 Sum_probs=78.8
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeec-ccCCCCCccC-ceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREV-VNDCLNPIWN-QTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v-~~~t~nP~wn-e~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
..+..+|++.|.++.......+++|.+ +.+.+||+|| |.|+|.|.+|.-+-|.+.|+|.|.+++ .+||++..|+..+
T Consensus 1081 gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1081 GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhh
Confidence 344567999999888877766666655 5578999999 999999999999999999999999998 8999999999998
Q ss_pred cccceeeeEEEcCCCCccEEEE
Q 009664 495 ILEGEYTDCFELDGTKSGKLKL 516 (529)
Q Consensus 495 ~~~~~~~~w~~L~~~~~G~i~l 516 (529)
... -+-.+|+++.+-++.|
T Consensus 1161 k~G---fRsVpLkN~ySEdlEL 1179 (1267)
T KOG1264|consen 1161 KSG---FRSVPLKNGYSEDLEL 1179 (1267)
T ss_pred hcc---ceeeecccCchhhhhh
Confidence 543 4668888876665553
No 234
>PLN02352 phospholipase D epsilon
Probab=98.22 E-value=6e-06 Score=88.67 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=73.6
Q ss_pred CCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccce-ee
Q 009664 423 SGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGE-YT 501 (529)
Q Consensus 423 ~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~-~~ 501 (529)
++|+.|.+ .+...-|| .+..||+|||.|...|....+..++|.|+| +..+||.+.||..+++..+. ++
T Consensus 37 ~~y~tv~~----~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~ 105 (758)
T PLN02352 37 ATYVTIKI----GNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFIN 105 (758)
T ss_pred CceEEEEe----CCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccc
Confidence 68888775 33445677 555699999999999987666689999999 35799999999999988766 89
Q ss_pred eEEEcCCCC----c-cEEEEEEEEEeCC
Q 009664 502 DCFELDGTK----S-GKLKLHLKWMPQP 524 (529)
Q Consensus 502 ~w~~L~~~~----~-G~i~l~~~~~~~~ 524 (529)
.||++.+.. . .+|+++++|+|+.
T Consensus 106 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 106 GFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred eEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 999997531 3 5999999999974
No 235
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=2.2e-06 Score=81.44 Aligned_cols=104 Identities=24% Similarity=0.337 Sum_probs=82.5
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD 334 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v~d 334 (529)
....-|.|++++|.+|..+|.+|.+|||+..++.++.+. +++|.+.+++.||+||+.|.|.+.. .....+.+.|||
T Consensus 230 s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd 309 (362)
T KOG1013|consen 230 STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGD 309 (362)
T ss_pred cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecc
Confidence 456778999999999999999999999999999866554 5788889999999999999998753 335578999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEE
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWL 364 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 364 (529)
++..+..+++|-+...+. ..+...++|.
T Consensus 310 ~~~G~s~d~~GG~~~g~~--rr~~v~~h~g 337 (362)
T KOG1013|consen 310 YDIGKSNDSIGGSMLGGY--RRGEVHKHWG 337 (362)
T ss_pred cCCCcCccCCCccccccc--ccchhhcCcc
Confidence 998778889988755543 3333344443
No 236
>PLN02964 phosphatidylserine decarboxylase
Probab=97.94 E-value=1.4e-05 Score=85.19 Aligned_cols=89 Identities=17% Similarity=0.345 Sum_probs=73.9
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
.-.|+..+++++|+ ++ ..|+|..+-.- +.+.+||.+.++|.||+||+...|.+........++.|||.+++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~--g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSF--GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEe--cceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 34699999999997 33 35898655432 37899999999999999999999999776656679999999999
Q ss_pred CCCceeEEEEEECcccCC
Q 009664 339 QSSELIGCAQVRLCELEP 356 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~ 356 (529)
++++++|.|+++|.++..
T Consensus 122 s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVT 139 (644)
T ss_pred CHHHhhhheeecHhhccH
Confidence 999999999998877643
No 237
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.85 E-value=3.1e-05 Score=63.93 Aligned_cols=83 Identities=17% Similarity=0.299 Sum_probs=63.9
Q ss_pred CCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEee--------c-------CCCCEEEEEEEECCCCC-------
Q 009664 423 SGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVE--------D-------GLHDMLIAEVWDHDTFG------- 480 (529)
Q Consensus 423 ~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--------~-------~~~~~L~i~V~D~~~~~------- 480 (529)
++|+++.+--. ...+.++|+++.++-.|.||..++|+|+ + ...+.+.++||..+..+
T Consensus 34 N~yv~i~lSFl-~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 34 NSYVTIHLSFL-PEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred ceEEEEEeccC-CCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 36777664333 3455789999999999999999999986 1 13568999999876432
Q ss_pred ---CC-eeEEEEEecccccccc-eeeeEEEc
Q 009664 481 ---KD-YMGRCILTLTRVILEG-EYTDCFEL 506 (529)
Q Consensus 481 ---~d-~lG~~~i~L~~l~~~~-~~~~w~~L 506 (529)
+| .||.+.||+.+++.+. .+..||++
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 13 6999999999998764 57999985
No 238
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.83 E-value=0.0001 Score=76.30 Aligned_cols=227 Identities=15% Similarity=0.261 Sum_probs=153.3
Q ss_pred CCCCceecCCC-------cchHHHHHHHHHHchhh--HHHHHHHH----HHhHHHHHhhcC-CCccceEEEEEEecCCCC
Q 009664 58 FYPSWVVFSHR-------QKLTWLNHHLEKLWPYV--NEAASELI----KSSVEPVLEQYR-PFILSSLKFSKFTLGTVA 123 (529)
Q Consensus 58 ~~p~w~~~~~~-------E~~~WlN~~l~~~Wp~~--~~~~~~~~----~~~~~~~l~~~~-p~~i~~~~~~~~~lG~~~ 123 (529)
..|.|..+... -.|-.+|.++..++.-. .+++...+ ...+...+.... ...+..+...++-+|..-
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 46778765321 12445566666666521 22233333 333444444433 348899999999999999
Q ss_pred CeEeeEEEEecC-------------------------CCeEEEEEEEEEecCceEEEEEEeeecceeeEEEEEEEEEEEE
Q 009664 124 PQFTGVSIIEDG-------------------------GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178 (529)
Q Consensus 124 P~i~~i~~~~~~-------------------------~~~~~ld~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~~ 178 (529)
|.+++.+++.-+ -..+.+-+|+.|.|+.--++++....+....+.|+-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998521 1234566789999987767777766777778899999999999
Q ss_pred EEEEecCCCCCCcceeEEEEeccceeeeEEEEE--cccccccCCcchHHHHHHHHHHHhhhccccccccc--CCCC---C
Q 009664 179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV--VGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIV--PILP---G 251 (529)
Q Consensus 179 rv~l~pl~~~~P~~~~v~~~f~~~p~l~f~l~~--~g~~~~~~P~l~~~~~~~i~~~i~~~~~~P~~~~i--pl~~---~ 251 (529)
|+.+. .-| ...++++|...|.+...++. .|..+- --+.+.+...++.+++...+||++..- |..+ +
T Consensus 241 r~~~~----r~p-y~hw~~sf~G~P~~e~di~s~~qg~qLQ--~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQP-YHHWTFSFVGQPIFETDINSQIQGHQLQ--RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----ecc-ceeeeeeeccCchhhhhhHHHHHHHHHH--HHhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99887 344 45689999999976655443 232211 013467788888889999999997542 3332 1
Q ss_pred -----CccccccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEec
Q 009664 252 -----DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP 293 (529)
Q Consensus 252 -----~~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 293 (529)
..+.....+.|.+.|++.++..|... .++..-||.+.+.+
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 11223346789999999999888644 57888999998864
No 239
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.82 E-value=2.9e-05 Score=62.25 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=53.7
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
.+.+++|+.+.+ ....+.||++ +.||.|||.|+|.+. ....+.+.|||+.....--+|-+-+.++++...
T Consensus 20 ~~~~etyV~IKv----ed~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 20 SKRPETYVSIKV----EDVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ccCCCcEEEEEE----CCEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeecceeeehhhHHHHHHH
Confidence 345678888875 2334778877 589999999999994 467899999999652224699999999998743
No 240
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=97.81 E-value=6e-05 Score=76.49 Aligned_cols=95 Identities=24% Similarity=0.415 Sum_probs=75.9
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc-eEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ-TFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne-~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.++.+.+ +...+||.|..+++||.||. -|.|.+.|. .++.|.|.++|++..+. |.||.+.|+++-+.
T Consensus 23 d~tdafveik~-----~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~ 97 (1169)
T KOG1031|consen 23 DLTDAFVEIKF-----ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLC 97 (1169)
T ss_pred ccchheeEEEe-----cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHH
Confidence 45567776664 66789999999999999996 589998754 67899999999999886 99999999999775
Q ss_pred ccc----------eeeeEEEcCC---CCccEEEEEEE
Q 009664 496 LEG----------EYTDCFELDG---TKSGKLKLHLK 519 (529)
Q Consensus 496 ~~~----------~~~~w~~L~~---~~~G~i~l~~~ 519 (529)
-++ -+..|||+-+ +-.|+|.+-++
T Consensus 98 ~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 98 LEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred HHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 321 2489999975 45788887654
No 241
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.66 E-value=9.8e-05 Score=61.07 Aligned_cols=103 Identities=17% Similarity=0.356 Sum_probs=74.0
Q ss_pred EEEEEEEecCCCccC-------C------CCCCCcEEEEEEec-CCCCeEeccccCCCCCCeeccEEEEEEe--------
Q 009664 264 LEVKLVQAKGLTNKD-------L------IGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVE-------- 321 (529)
Q Consensus 264 L~V~v~~a~~L~~~d-------~------~g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~Wne~f~~~v~-------- 321 (529)
|.|.|++|.+|.... . .---++|+++.+.- .+++..+|+++.++-.|.|+.+++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 457788888876421 0 01248999998653 2356789999999999999999999864
Q ss_pred c-------CCCCEEEEEEEECCCC----------CCCceeEEEEEECcccC-CCceeeEEEEc
Q 009664 322 D-------ESTQHLVVRIYDDEGI----------QSSELIGCAQVRLCELE-PGKVKDVWLKL 366 (529)
Q Consensus 322 ~-------~~~~~l~i~v~d~~~~----------~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 366 (529)
+ .....+.++||+.+.. .+|-.||.+.+|+.+|. .......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1245789999997532 24568999999999974 44556778764
No 242
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.65 E-value=5.3e-05 Score=58.01 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=69.0
Q ss_pred EEEEEEecCCCccCCCC-CCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEe--cCCCCEEEEEEEECCCCCCC
Q 009664 265 EVKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE--DESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 265 ~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~--~~~~~~l~i~v~d~~~~~~d 341 (529)
-|+++.|++|.-....| .+.-|++--+.-...-..||++.++..||+|+|+|.|.+. ...+-.|.|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 47899999987544322 3445665444322334688999999999999999999864 3445578889988 44577
Q ss_pred ceeEEEEEECcccCCCceeeEEEE
Q 009664 342 ELIGCAQVRLCELEPGKVKDVWLK 365 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~ 365 (529)
+.||.|.+.++++-.. +.++|..
T Consensus 80 e~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCHH-Hhhhhhc
Confidence 8999999999886442 3445543
No 243
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.32 E-value=0.00017 Score=55.24 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=52.6
Q ss_pred CCeeEeeecccCCCCCccCceEEEEee--cCCCCEEEEEEEECCCCCCCeeEEEEEecccccccceeeeEEE
Q 009664 436 DASQKRREVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFE 505 (529)
Q Consensus 436 ~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~~~~w~~ 505 (529)
..-..||+++....||.|+|+|.|.+. +..+-.|.+.|+.. .-.++.||.+.++|+++-. .+.++|..
T Consensus 33 kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-~~RKe~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 33 KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-TPRKRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-CCccceeeEEEeecccCCH-HHhhhhhc
Confidence 334579999999999999999999875 44667899999983 3245899999999999743 33466754
No 244
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.00026 Score=68.86 Aligned_cols=110 Identities=24% Similarity=0.378 Sum_probs=85.7
Q ss_pred CcceEEEEEEEEecCCCccCC-CCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEE-
Q 009664 259 KPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD- 334 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d- 334 (529)
...|.|.|.|++|++|..+.- ...++||++||+.+.+. -+.+|+...+|.+|.+.+...|.-. +....|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 467999999999999987543 23689999999985433 2568888899999988776666543 345689999994
Q ss_pred CCCCCCCceeEEEEEECcccCCCc-eeeEEEEcccc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVKD 369 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 369 (529)
+.+..++.|+|.+.+-+.+|.... ....||+|...
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 677778889999999999996655 67789998653
No 245
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.11 E-value=0.0005 Score=67.56 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=92.2
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEe--cCCCCeEeccccCCCCCCeeccEEEEEEecC---C--------CC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---S--------TQ 326 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~--------~~ 326 (529)
....|.+.|+++.+++........|-|+++.+. .+..++.+|.++++|.+|.|+|.|.+.+... . ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 445677788888877654322235778888764 2345678899999999999999999988652 1 23
Q ss_pred EEEEEEEECCCC-CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 327 HLVVRIYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 327 ~l~i~v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
.+.|++|+...+ ..|.++|.|.+.|..|...-.....++|.. ......|.|.+.+...
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-----cccccCCeeEEEEEEe
Confidence 589999998775 578899999999998877666667777742 2345668998888875
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=96.87 E-value=0.0014 Score=70.36 Aligned_cols=67 Identities=18% Similarity=0.344 Sum_probs=56.5
Q ss_pred EEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 432 ELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 432 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
....|.+++||...++|.||+||+...|.+........++.|||++.++. +++|.+.++|.++...+
T Consensus 74 ~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 74 CVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred EEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHH
Confidence 34578999999999999999999998888864444446999999999887 89999999998876553
No 247
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.76 E-value=0.024 Score=49.35 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=90.2
Q ss_pred CcceEEEEEEEEecCCCccCC--CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC------------
Q 009664 259 KPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES------------ 324 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~------------ 324 (529)
+..-.|.++|..++-....-. .+..+.-..+++. -++++++|+.+..+.+|.++|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 345678999988876543211 1445555555554 3378999999999999999999999986442
Q ss_pred -CCEEEEEEEECCCCCCCceeEEEEEECcccCCCcee--eEEEEcccccccccCCccccEEEEEEEEEEcc
Q 009664 325 -TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK--DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (529)
Q Consensus 325 -~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (529)
.+.+.+.|---|..+...++|+-.++...+...... .....|.... .....+.|-|.+++...|..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~--~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG--PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC--CCCccceeEEEEEEEeecCC
Confidence 346788888777766678999999999887655443 3333333211 22345789999999988753
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.002 Score=62.82 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=71.7
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEE-CCCCCC-CeeEEEEEecccccccc
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD-HDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D-~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
.+++|++||.+..+....+.||+...+|.+|.|-+...|.-. +....|.+.||- +..... .+||.++|-|.++-...
T Consensus 290 ~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~ 368 (405)
T KOG2060|consen 290 LPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSS 368 (405)
T ss_pred ccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEeccccccchHHHhhHHHHHhhhhcccc
Confidence 677999999988888888899999999999998887777644 466789999994 444333 69999999999987665
Q ss_pred -eeeeEEEcCCC
Q 009664 499 -EYTDCFELDGT 509 (529)
Q Consensus 499 -~~~~w~~L~~~ 509 (529)
....||+|-+.
T Consensus 369 ~~~igwyKlfgs 380 (405)
T KOG2060|consen 369 SPVIGWYKLFGS 380 (405)
T ss_pred ccceeeeeccCC
Confidence 45899999874
No 249
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.01 E-value=0.084 Score=52.52 Aligned_cols=119 Identities=12% Similarity=0.221 Sum_probs=87.3
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec-------CCCCEEEEEEEECC
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-------ESTQHLVVRIYDDE 336 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~-------~~~~~l~i~v~d~~ 336 (529)
+.|+|++|++.+... ...-.+..+++ +....|..+..+..|.||....+.+.. .....|++++|-.|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998652 23445666665 778889999999999999988887642 23568999999987
Q ss_pred -CCCCCceeEEEEEECccc---CCC--ceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 337 -GIQSSELIGCAQVRLCEL---EPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 337 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
..+..+.+|.+.++|... ..+ .....|++|..... +-.+..-+|.+.+....
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIED 133 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc--ccccCCccEEEEEEEec
Confidence 456788999999999998 555 46778999975321 11233456777776654
No 250
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.91 E-value=0.017 Score=57.06 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-----------CCCEEEEEEEECCCCC--CCeeEEEE
Q 009664 422 KSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-----------LHDMLIAEVWDHDTFG--KDYMGRCI 488 (529)
Q Consensus 422 ~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-----------~~~~L~i~V~D~~~~~--~d~lG~~~ 488 (529)
-+.|+++.+....-..++.||.+++.|.+|.|+|.|...+... ....+.|+++.+..+- +.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 3456666644333345678999999999999999999998642 1236899999998773 36999999
Q ss_pred EecccccccceeeeEEEcCCC---CccEEEEEEEEE
Q 009664 489 LTLTRVILEGEYTDCFELDGT---KSGKLKLHLKWM 521 (529)
Q Consensus 489 i~L~~l~~~~~~~~w~~L~~~---~~G~i~l~~~~~ 521 (529)
+.|..|...-.+...++|.++ ..|.+.+++..+
T Consensus 468 ikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 999998777677889999864 358888877665
No 251
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.67 E-value=0.033 Score=60.16 Aligned_cols=92 Identities=25% Similarity=0.441 Sum_probs=69.3
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC----CeEecccc-CCCCCCeeccE-EEEE-EecCCCCEEEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----KTKKSKTI-NNDLNPIWNEH-FEFI-VEDESTQHLVVRI 332 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----~~~kT~~~-~~t~nP~Wne~-f~~~-v~~~~~~~l~i~v 332 (529)
-.+.+.|+|++|.-|..++ ...||.+.+-..+. +.++|+++ .++.||+|+|. |.|. |--+.-..|+|.|
T Consensus 701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV 776 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence 3578999999999998765 34799998753322 35778876 57899999974 7765 3233345799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCce
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKV 359 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~ 359 (529)
|+.++ .+||+=.+|+..+..|-.
T Consensus 777 yeEgg----K~ig~RIlpvd~l~~GYr 799 (1189)
T KOG1265|consen 777 YEEGG----KFIGQRILPVDGLNAGYR 799 (1189)
T ss_pred eccCC----ceeeeeccchhcccCcce
Confidence 99764 699999999999887754
No 252
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.50 E-value=0.93 Score=39.26 Aligned_cols=122 Identities=13% Similarity=0.214 Sum_probs=76.0
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEecccc-CCCCCCeeccEEEEEEec---C-----CCCEEEEE
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIVED---E-----STQHLVVR 331 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~-~~t~nP~Wne~f~~~v~~---~-----~~~~l~i~ 331 (529)
.=.+.+++.+..+++. ....-|++...+.......+|+.. ..+..-.|||.|.+.+.- . ....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3467788899988875 122233443333111002333332 334557999999888531 1 23468899
Q ss_pred EEECCCCCCCceeEEEEEECcccCCC--ceeeEEEEcccccccccCCccccEEEEEEEEEEcc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (529)
|+....-++...+|.+.++|.+.... ......++|.. .......|++++.+.+..
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~------~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK------CKKSNATLSISISLSELR 138 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc------CCCCCcEEEEEEEEEECc
Confidence 99875333336899999999998663 44556666643 235668899999888765
No 253
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.10 E-value=0.2 Score=43.70 Aligned_cols=92 Identities=24% Similarity=0.343 Sum_probs=71.0
Q ss_pred EEccCCeeEeeecccCCCCCccCceEEEEeecC-------------CCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 432 ELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-------------LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 432 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-------------~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
....+.++++|+.+.-+.+|.|+|.|-|.++.. ..+.+++.|.-.+..++ .++|+-.++...++..
T Consensus 39 ~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 39 HLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred EEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 345677899999999999999999999998632 23579999998888766 7999999999999887
Q ss_pred cee--eeEEEcCCC------CccEEEEEEEEEeC
Q 009664 498 GEY--TDCFELDGT------KSGKLKLHLKWMPQ 523 (529)
Q Consensus 498 ~~~--~~w~~L~~~------~~G~i~l~~~~~~~ 523 (529)
+.. .--..|.|. ..|-+.++++-.|.
T Consensus 119 ~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 119 GNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 764 444555543 35777777766654
No 254
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.88 E-value=0.73 Score=40.71 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=58.9
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEe--cC-CCCEEEEEEEEC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD 335 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~~-~~~~l~i~v~d~ 335 (529)
..++|+|++++++.-.+ .+|-|+.+.+--++. ....|+.+.. .++.|||..+|.+. +. ....|.|.+|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999987543 467888886642221 1223443333 67999998888753 32 356899999997
Q ss_pred CCCC----CCceeEEEEEECcc
Q 009664 336 EGIQ----SSELIGCAQVRLCE 353 (529)
Q Consensus 336 ~~~~----~d~~lG~~~i~l~~ 353 (529)
...+ ....+|.+.++|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 5421 23469999999865
No 255
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=94.22 E-value=0.26 Score=42.86 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=41.3
Q ss_pred eEeeecccCC-CCCccCceEEEEee--c-CCCCEEEEEEEECCCCCC-----CeeEEEEEecccc
Q 009664 439 QKRREVVNDC-LNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTFGK-----DYMGRCILTLTRV 494 (529)
Q Consensus 439 ~~kT~v~~~t-~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~~~-----d~lG~~~i~L~~l 494 (529)
...|+.+.-+ .++.|||.++|.+. + |.++.|.|+||+.+.... ..||.+.++|-+.
T Consensus 21 ~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 21 VQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 3466666655 79999999999874 3 478899999998766443 4899999999885
No 256
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.19 E-value=0.36 Score=43.45 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=58.5
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEE--ecC-CCCEEEEEEEEC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIV--EDE-STQHLVVRIYDD 335 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v--~~~-~~~~l~i~v~d~ 335 (529)
..++|+|+.+.++.-.+ ...+-|+.+.+--++. ....|+....+.++.|||...|.+ .+. ....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 36889999999998522 3456677765532111 134565555456799999988875 332 356899999996
Q ss_pred CCCC----------------CCceeEEEEEECcc
Q 009664 336 EGIQ----------------SSELIGCAQVRLCE 353 (529)
Q Consensus 336 ~~~~----------------~d~~lG~~~i~l~~ 353 (529)
.... .+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5321 23577887777754
No 257
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.18 E-value=0.13 Score=49.22 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=71.4
Q ss_pred CcceEEEEEEEEecCCCccCC--CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~ 336 (529)
...|+|.+++..+++|.-... .-.-+-||++... ...+.+|.+.....-=.|.|+|+..+.+. ..+.+-||.|+
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~ 123 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWP 123 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeec--ccCccccccccCCCCccchhhceeecccc--eeeeEEEeecC
Confidence 356999999999999975332 2345889998875 22234444444444448999999988654 36888899988
Q ss_pred CCCCCceeEEEEEECccc-CCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 337 GIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
.-.++++.-...+.+..+ ..++.+. +.| .-.++|++.+.+.+.
T Consensus 124 pq~RHKLC~~g~l~~~~v~rqspd~~--~Al--------~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 124 PQRRHKLCHLGLLEAFVVDRQSPDRV--VAL--------YLEPRGQPPLRLPLA 167 (442)
T ss_pred chhhccccccchhhhhhhhhcCCcce--eee--------ecccCCCCceecccC
Confidence 765565532222333322 1222222 222 235678888877664
No 258
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.81 E-value=1.2 Score=38.62 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=68.1
Q ss_pred CceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEee---cC-----CCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 424 GANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVE---DG-----LHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 424 ~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~---~~-----~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
+.+.|...+.+......+|+... .+..-.|||.|.+.+. +. ....+.|.|+.....++ ..+|.+.|+|++
T Consensus 24 ~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLae 103 (143)
T PF10358_consen 24 GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAE 103 (143)
T ss_pred CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHH
Confidence 45555443333221123443333 3456789999999874 11 33468899988754444 489999999999
Q ss_pred cccc--ceeeeEEEcCCC--CccEEEEEEEEEeCCCC
Q 009664 494 VILE--GEYTDCFELDGT--KSGKLKLHLKWMPQPIY 526 (529)
Q Consensus 494 l~~~--~~~~~w~~L~~~--~~G~i~l~~~~~~~~~~ 526 (529)
.... .....-++|.+. .+..+++.+...++...
T Consensus 104 y~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 104 YANEDEEPITVRLLLKKCKKSNATLSISISLSELRED 140 (143)
T ss_pred hhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence 9885 456788999865 45788888888876543
No 259
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.77 E-value=0.94 Score=35.45 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=58.5
Q ss_pred CCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceee
Q 009664 282 KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361 (529)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 361 (529)
-++-.+.+.+. +....+|.-.. -.+..|++.|.+.+.. +..|+|.||=.|- ..+-|-..+.|.+... .
T Consensus 8 ~~eV~avLklD--n~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----~ 75 (98)
T cd08687 8 CSEVSAVLKLD--NTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----E 75 (98)
T ss_pred ccceEEEEEEc--CeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----c
Confidence 36778888886 34566676543 3578999999999865 4689999987663 3466777788877322 1
Q ss_pred EEEEcccccccccCCccccEEEEEEEE
Q 009664 362 VWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 362 ~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
.-.+ -.+.|.+..+++|
T Consensus 76 ~~~~----------lepqg~l~~ev~f 92 (98)
T cd08687 76 VQLD----------MEPQLCLVAELTF 92 (98)
T ss_pred ceec----------cccccEEEEEEEe
Confidence 2222 3567888888887
No 260
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.66 E-value=0.58 Score=41.37 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=58.6
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEECC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDE 336 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~l~i~v~d~~ 336 (529)
.++|++....++...+ ....+-|+.+.+--++. ....|.......++.|||...|.+. + +....|.+.+|+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5678888877776411 23456677665542221 2234444444478999999888753 3 23558999999976
Q ss_pred CCC--CCceeEEEEEECcc
Q 009664 337 GIQ--SSELIGCAQVRLCE 353 (529)
Q Consensus 337 ~~~--~d~~lG~~~i~l~~ 353 (529)
..+ .+..||.+.++|-+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred cCCCCcceEEEEEeEEeEc
Confidence 543 46799999999865
No 261
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.44 E-value=0.3 Score=43.23 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=44.3
Q ss_pred EeeecccCCCCCccCceEEEEee--c-CCCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 440 KRREVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 440 ~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
..|+.+.-+..+.|||-.+|+|. + +.++.|.|+|||....++ ..+|.+.++|-+-
T Consensus 49 v~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 49 VQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred EEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 46666666778899999999884 3 478899999999876544 6899999999884
No 262
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=92.78 E-value=0.63 Score=46.42 Aligned_cols=92 Identities=14% Similarity=0.210 Sum_probs=69.4
Q ss_pred EEEccCCeeEeeecccCCCCCccCceEEEEee-------cCCCCEEEEEEEECCC-CC-CCeeEEEEEecccc---ccc-
Q 009664 431 IELEKDASQKRREVVNDCLNPIWNQTFDFVVE-------DGLHDMLIAEVWDHDT-FG-KDYMGRCILTLTRV---ILE- 497 (529)
Q Consensus 431 ~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-------~~~~~~L~i~V~D~~~-~~-~d~lG~~~i~L~~l---~~~- 497 (529)
+..........|..+..+..|.||....+.+. ......|.++|+--+. .+ ++.+|.+.++|..+ ...
T Consensus 22 v~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~ 101 (340)
T PF12416_consen 22 VEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKN 101 (340)
T ss_pred EEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccc
Confidence 44555666788999999999999999999885 2356789999998873 23 38999999999998 433
Q ss_pred -ceeeeEEEcCCC------CccEEEEEEEEEe
Q 009664 498 -GEYTDCFELDGT------KSGKLKLHLKWMP 522 (529)
Q Consensus 498 -~~~~~w~~L~~~------~~G~i~l~~~~~~ 522 (529)
.....||+|-+. .+-++.+.+.-..
T Consensus 102 ~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 102 QKQKPKWYKLLSSSSKYKKHKPELLLSLSIED 133 (340)
T ss_pred cccCCCeeEccccccccccCCccEEEEEEEec
Confidence 334899999876 3567777665543
No 263
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.17 E-value=0.68 Score=41.02 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=50.6
Q ss_pred CCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEe--cC-CCCEEEEEEEECCCCCCCceeEEEEEECcc
Q 009664 281 GKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDEGIQSSELIGCAQVRLCE 353 (529)
Q Consensus 281 g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~~-~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~ 353 (529)
..+|-|+.+.+-.++. ....|+.+.-+..+.|||...|.+. +. ....|.|.+||.+..++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 4567787776642221 1235555555667899998888763 32 356899999998765567799999999865
No 264
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.38 E-value=0.74 Score=41.39 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=60.8
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccC----CCCCCeeccEEEEEEe--c-CCCCEEEEE
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTIN----NDLNPIWNEHFEFIVE--D-ESTQHLVVR 331 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~----~t~nP~Wne~f~~~v~--~-~~~~~l~i~ 331 (529)
..+.|+|.++.+++........|-|+.+.+--++. ....|+... -...+.|||...|.+. + +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 46789999999998765444577888886642211 122343211 1235779998888763 2 235589999
Q ss_pred EEECCCCC---------CCceeEEEEEECcc
Q 009664 332 IYDDEGIQ---------SSELIGCAQVRLCE 353 (529)
Q Consensus 332 v~d~~~~~---------~d~~lG~~~i~l~~ 353 (529)
+|+....+ .+..||.+.++|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99976543 35688999888865
No 265
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.93 E-value=0.63 Score=41.11 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=41.9
Q ss_pred EeeecccCCCCCccCceEEEEee--c-CCCCEEEEEEEECCCCC--C-CeeEEEEEecccc
Q 009664 440 KRREVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTFG--K-DYMGRCILTLTRV 494 (529)
Q Consensus 440 ~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~~--~-d~lG~~~i~L~~l 494 (529)
..|.......++.|||..+|++. + |.++.|.|.||+.+..+ + ..||.+.++|-+.
T Consensus 47 ~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 47 QSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 34444444478999999999863 3 47889999999977654 2 5899999999884
No 266
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=89.55 E-value=3.9 Score=37.17 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=40.6
Q ss_pred eEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCC-C-CceeEEEEEECc
Q 009664 298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ-S-SELIGCAQVRLC 352 (529)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~~-~-d~~lG~~~i~l~ 352 (529)
.++|-+...+.+|.|+|++.+.+... ....|.|++++..... + ...+|.+-+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 57888899999999999999887543 4557889888754321 1 256888888873
No 267
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=88.40 E-value=2.9 Score=37.69 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=42.6
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC---eEeccccCCCCCCeeccEEEEEEe--cC-CCCEEEEEEEECC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDE 336 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~Wne~f~~~v~--~~-~~~~l~i~v~d~~ 336 (529)
.++|+|.++..+. .+......-|+.+.+-- +++ ..+|....-+.++.|||...|.+. +. ....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 5678888876432 22222233455554431 122 224555555678999998877753 32 3568999999964
No 268
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=88.09 E-value=5.9 Score=36.12 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=40.9
Q ss_pred eEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCC-CC---CceeEEEEEECc
Q 009664 298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-QS---SELIGCAQVRLC 352 (529)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~-~~---d~~lG~~~i~l~ 352 (529)
.++|-+...+.+|.|+|++.+.+... ....|.|.+++.... .+ ...+|.+-+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 57888888999999999998887543 456899999885432 12 246888888874
No 269
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=87.95 E-value=1.4 Score=38.88 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=39.4
Q ss_pred eeecccCCCCCccCceEEEEee--c-CCCCEEEEEEEECCCC-C---C-CeeEEEEEecccc
Q 009664 441 RREVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTF-G---K-DYMGRCILTLTRV 494 (529)
Q Consensus 441 kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~-~---~-d~lG~~~i~L~~l 494 (529)
.|+.+.. .++.|||-.+|+|. + +.++.|.|+||+.... + + ..+|.+.++|-+-
T Consensus 46 ~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 46 NTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence 4544443 68999999999874 3 4788999999996542 1 2 3699999999874
No 270
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=87.59 E-value=2.8 Score=38.12 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=34.6
Q ss_pred CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCC-C--CceeEEEEEECcc
Q 009664 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ-S--SELIGCAQVRLCE 353 (529)
Q Consensus 297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~~-~--d~~lG~~~i~l~~ 353 (529)
..+.|.+..++.+|.|+|+|.+.+... ....|.|.+++...-. + +..+|.+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 356788888999999999999988654 3458999999965422 1 2689999999865
No 271
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=87.19 E-value=1.7 Score=39.22 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=40.2
Q ss_pred EeeecccCCCCCccCceEEEEee--c-CCCCEEEEEEEECCCC---------------C--CCeeEEEEEecccc
Q 009664 440 KRREVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTF---------------G--KDYMGRCILTLTRV 494 (529)
Q Consensus 440 ~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~---------------~--~d~lG~~~i~L~~l 494 (529)
.+|+.+.-+.++.|||-++|.|. | +..+.|.|.||+.... + +..||.+.+.|-+-
T Consensus 48 ~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 48 RRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred ceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 35666666778999999999874 3 4788999999985221 1 13688899888774
No 272
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=85.73 E-value=2.8 Score=38.09 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=35.3
Q ss_pred eeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCCC-C---CeeEEEEEeccc
Q 009664 438 SQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG-K---DYMGRCILTLTR 493 (529)
Q Consensus 438 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~-~---d~lG~~~i~L~~ 493 (529)
..+.|.+..++.+|.|+|+|.+.++.. .+..|.+++++..... + ..+|.+.++|.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 457888999999999999999988744 4668999999865432 1 489999999988
No 273
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=85.27 E-value=2.3 Score=38.27 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=41.0
Q ss_pred EeeecccCCCCCccCceEEEEee--c-CCCCEEEEEEEECCCCC----------------C-CeeEEEEEecccc
Q 009664 440 KRREVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTFG----------------K-DYMGRCILTLTRV 494 (529)
Q Consensus 440 ~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~~----------------~-d~lG~~~i~L~~l 494 (529)
..|+.+.-+.++.|||.++|.+. + |.++.|.|.||+....+ + ..||.+.++|-+.
T Consensus 46 ~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 46 VKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred eEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 45655555678999999999774 3 47889999999865321 1 4799999998874
No 274
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=84.43 E-value=2.7 Score=46.50 Aligned_cols=106 Identities=12% Similarity=0.224 Sum_probs=76.8
Q ss_pred CCcEEEEEEecCCCCeEeccccCCC-CCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceee
Q 009664 283 SDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361 (529)
Q Consensus 283 ~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 361 (529)
.++|+.+.+. .....+|....+. .+|.|.+.|......... .+.+.+-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g-~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIGFAHKAG-YVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeec--hhhhhchhhhhcccccchhhhhcccccccccc-EEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 4889988886 2344566666666 799999999877766543 78888888887776789999999999998888888
Q ss_pred EEEEcccccccccCCccccEEEEEEEEEEccc
Q 009664 362 VWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (529)
Q Consensus 362 ~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~ 393 (529)
.|+++...... .....-.+.+.+.|.+...
T Consensus 215 ~~~~Il~~d~~--~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 215 GWFPILDNDGK--PHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred ceeeeeccCCc--cccCCcccceEEeeEeech
Confidence 99988643211 1122234567788877654
No 275
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=84.42 E-value=18 Score=32.35 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=51.4
Q ss_pred CCCcEEEEEEecCCCCeEeccccCC--CCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccC
Q 009664 282 KSDPYAVLFVRPLPEKTKKSKTINN--DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355 (529)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~~~~~--t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~ 355 (529)
+..-|+++.++ ++...+|+...- ...-.++|.|.+.+.... ..|.++||.... ..+..|+++.+|+-...
T Consensus 36 ~~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEecCC-CEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 44568888886 345566665432 333467899999997754 589999999887 57889999999986653
No 276
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=83.82 E-value=16 Score=32.59 Aligned_cols=88 Identities=11% Similarity=0.275 Sum_probs=59.0
Q ss_pred cCCeeEeeecccCC--CCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc--ce--eeeEEEcCC
Q 009664 435 KDASQKRREVVNDC--LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE--GE--YTDCFELDG 508 (529)
Q Consensus 435 ~~~~~~kT~v~~~t--~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~--~~--~~~w~~L~~ 508 (529)
+++.+.+|+...=+ ..=.|||.|.+.+.. .-..|.++||.....++..|+++.+++-..... .. ...||.+..
T Consensus 46 N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~~~~~~~~~~~~eFsS 124 (168)
T PF15625_consen 46 NDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTVHTSTDNVPLEEYEFSS 124 (168)
T ss_pred CCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccCccceEEEEEEeeCCCCcccccccCCceEeEEEcC
Confidence 45556666554432 334589999999976 446899999999875568999999997754432 11 233333321
Q ss_pred ------------------------CCccEEEEEEEEEeC
Q 009664 509 ------------------------TKSGKLKLHLKWMPQ 523 (529)
Q Consensus 509 ------------------------~~~G~i~l~~~~~~~ 523 (529)
.-+|.+.+++.|...
T Consensus 125 ~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~ 163 (168)
T PF15625_consen 125 DQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVG 163 (168)
T ss_pred CceeeccceeccccccCCCCcccceeeeEEEEecEEeCC
Confidence 137999999999754
No 277
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=83.75 E-value=7.9 Score=33.47 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=39.1
Q ss_pred eccccCCC-CCCeeccEEEEEEe--c-CCCCEEEEEEEECCCCCCC----ceeEEEEEECccc
Q 009664 300 KSKTINND-LNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSS----ELIGCAQVRLCEL 354 (529)
Q Consensus 300 kT~~~~~t-~nP~Wne~f~~~v~--~-~~~~~l~i~v~d~~~~~~d----~~lG~~~i~l~~l 354 (529)
.|+...-+ .++.|||...|.+. + +....|.|.||+.+..... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56555555 79999999888864 3 3456899999997765444 6899999998653
No 278
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=80.94 E-value=4.4 Score=36.77 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=41.8
Q ss_pred eeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCC--CC-CeeEEEEEeccc
Q 009664 438 SQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF--GK-DYMGRCILTLTR 493 (529)
Q Consensus 438 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~--~~-d~lG~~~i~L~~ 493 (529)
..++|.|..++.+|.|||++.+.++.. ....|.++++..... .+ ..+|-.-++|-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 357899999999999999999988633 566788876654322 12 569988899854
No 279
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=79.96 E-value=9.4 Score=30.79 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=45.1
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEECCC
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEG 337 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~l~i~v~d~~~ 337 (529)
+.+.+...++..-......+|-|+.+.+--++. ....|+.+.-...+.|||...|.+. + +....|.+.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 456666666665443323357888886642221 1234555554566899998888753 3 235689999998643
No 280
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=79.42 E-value=20 Score=32.30 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=38.4
Q ss_pred EeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCC-----CCCceeEEEEEECcc
Q 009664 299 KKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-----QSSELIGCAQVRLCE 353 (529)
Q Consensus 299 ~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~-----~~d~~lG~~~i~l~~ 353 (529)
++|-+..+ .+|.|+|+|.+.+... ....|.|.+++.+.- .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444444 8999999999988543 356899999986532 235678888888754
No 281
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=77.01 E-value=16 Score=29.94 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=44.9
Q ss_pred CCeEeccccCCCCCCeeccEEEEEEecC-------CCCEEEEEEEECCCCCCCceeEEEEEECcccCCCce--eeEEEEc
Q 009664 296 EKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV--KDVWLKL 366 (529)
Q Consensus 296 ~~~~kT~~~~~t~nP~Wne~f~~~v~~~-------~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~L 366 (529)
-+.+.|.++. +.+|.+|-+-.|.|... .+..+.++++..-. ...+.+|.+.+++..+..... ......|
T Consensus 10 fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~i~~~~~l 87 (107)
T PF11618_consen 10 FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGERIHGSATL 87 (107)
T ss_dssp ---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S--EEEEEEE
T ss_pred eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCceEEEEEEE
Confidence 3456777666 88999998888887533 34579999998663 346899999999999853332 3344444
Q ss_pred ccccccccCCccccEEEEEEEEE
Q 009664 367 VKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 367 ~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
.. .++..-|.|...++..
T Consensus 88 ~g-----~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 88 VG-----VSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -B-----SSS-TSEEEEEEEEEE
T ss_pred ec-----cCCCeEEEEEEEEEec
Confidence 32 2344678887776653
No 282
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=75.89 E-value=13 Score=29.26 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=44.8
Q ss_pred EeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccceeeeEEEcCCCCccEEEEEEE
Q 009664 440 KRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLK 519 (529)
Q Consensus 440 ~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~ 519 (529)
-.|.-+. ..+..|++.|++.+. .+..|+|+|+=+|.. .+=|-..+-|.+... ..-.+|+. .|.+..++.
T Consensus 23 gqT~Wk~-~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~R--slCav~~lrLEd~~~----~~~~~lep--qg~l~~ev~ 91 (98)
T cd08687 23 GQTQWKP-KSNQAWDQSFTLELE--RSRELEIAVYWRDWR--SLCAVKFLKLEDERH----EVQLDMEP--QLCLVAELT 91 (98)
T ss_pred eeccccc-cccccccceeEEEee--cccEEEEEEEEecch--hhhhheeeEhhhhcc----cceecccc--ccEEEEEEE
Confidence 3443333 367899999999986 567899999877652 344455567777322 34455555 466666665
Q ss_pred E
Q 009664 520 W 520 (529)
Q Consensus 520 ~ 520 (529)
|
T Consensus 92 f 92 (98)
T cd08687 92 F 92 (98)
T ss_pred e
Confidence 5
No 283
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=75.84 E-value=8.6 Score=35.05 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=41.9
Q ss_pred eeEeeecccCCCCCccCceEEEEeec--CCCCEEEEEEEECCCC-----CCCeeEEEEEecc
Q 009664 438 SQKRREVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDTF-----GKDYMGRCILTLT 492 (529)
Q Consensus 438 ~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~D~~~~-----~~d~lG~~~i~L~ 492 (529)
..++|-|.+++.+|.|+|++...++- -....|.++++..... ....+|-.-++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 46899999999999999999988863 2567888888764321 1136998889986
No 284
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=75.16 E-value=28 Score=31.58 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=38.9
Q ss_pred eEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCC--C-------CCceeEEEEEECc
Q 009664 298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI--Q-------SSELIGCAQVRLC 352 (529)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~--~-------~d~~lG~~~i~l~ 352 (529)
...|.+..++.+|.|+|++.+.+.-. ....|.|+.|+.+.. . ....+|.+.+||-
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl 122 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL 122 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence 56788888899999999998887543 455799999986521 1 1245677777764
No 285
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=72.25 E-value=2.7 Score=46.23 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=44.7
Q ss_pred CeeEeeecccC-CCCCccCce-EEEE-eecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 437 ASQKRREVVND-CLNPIWNQT-FDFV-VEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 437 ~~~~kT~v~~~-t~nP~wne~-f~f~-v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
.+.+||+++.. +.||+|||. |.|. |--|.-+.|.|.|++.. ..+||+=.+|++.+...
T Consensus 737 Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 737 RKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAG 797 (1189)
T ss_pred hhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCc
Confidence 35678888774 789999984 7774 33346678999999986 37999999999988544
No 286
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=71.87 E-value=10 Score=34.17 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=39.9
Q ss_pred CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCCC------CceeEEEEEECc
Q 009664 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS------SELIGCAQVRLC 352 (529)
Q Consensus 297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~~~------d~~lG~~~i~l~ 352 (529)
....|.+...+.+|.|+|++.+.+.-. ....|.|+.++.+.-.+ ...+|.+.+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 356788888999999999998887543 34579999998543211 245777777763
No 287
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=71.38 E-value=7.7 Score=31.29 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=29.2
Q ss_pred EeeecccCCCCCccCceEEEEee---cCCCCEEEEEEEECCC
Q 009664 440 KRREVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDT 478 (529)
Q Consensus 440 ~kT~v~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~~~ 478 (529)
..|+.+.-...+.|||-.+|++. -|.++.|.+.+|+...
T Consensus 51 v~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 51 VSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred EEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 35555555667999999999874 3478899999998653
No 288
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=71.04 E-value=5.7 Score=44.04 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=72.5
Q ss_pred CCCceEEEEEEEccCCeeEeeecccCC-CCCccCceEEEEeecCCCCEEEEEEEECCCCC-CCeeEEEEEecccccccce
Q 009664 422 KSGANGTEAIELEKDASQKRREVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRVILEGE 499 (529)
Q Consensus 422 ~~~~l~v~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~-~d~lG~~~i~L~~l~~~~~ 499 (529)
..+|+.+.+... ...+|...++. .+|.|.+.|+..+.. ....+++.|.+.+..| ...+|.+.++...+..+..
T Consensus 138 ~e~Ylt~~l~~~----~~~~t~~~~~f~e~s~~~f~~~~~~~h-~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~ 212 (887)
T KOG1329|consen 138 LENYLTVVLHKA----RYRRTHVIYEFLENSRWSFSFDIGFAH-KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHR 212 (887)
T ss_pred ccchheeeechh----hhhchhhhhcccccchhhhhccccccc-cccEEEEeecCCccccceeEEEEeccchhhhhcccc
Confidence 458888775322 33466666665 799999998877765 4567999999999988 5899999999999998888
Q ss_pred eeeEEEcCCC------CccEEEEEEEEEeC
Q 009664 500 YTDCFELDGT------KSGKLKLHLKWMPQ 523 (529)
Q Consensus 500 ~~~w~~L~~~------~~G~i~l~~~~~~~ 523 (529)
..+|+++.+. +.-.+.+++.+++.
T Consensus 213 ~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 213 IGGWFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred ccceeeeeccCCccccCCcccceEEeeEee
Confidence 8999998642 23445566777664
No 289
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=70.53 E-value=9.1 Score=34.31 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=36.2
Q ss_pred CCCccCceEEEEee---cCCCCEEEEEEEECCCCC---------C-CeeEEEEEecccc
Q 009664 449 LNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFG---------K-DYMGRCILTLTRV 494 (529)
Q Consensus 449 ~nP~wne~f~f~v~---~~~~~~L~i~V~D~~~~~---------~-d~lG~~~i~L~~l 494 (529)
..+.|||-++|.+. -|.++.|.|.+|+....+ + ..||.+.++|-+.
T Consensus 61 ~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 61 PRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred ccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 35779999999874 347889999999876543 2 5899999999874
No 290
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=67.36 E-value=1.8 Score=46.96 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=71.4
Q ss_pred cchHHHHHHHHHHchhhHHH--HHHHHHHhHHHHHhhcC-CCccceEEEEEEecCCCCCeEeeEEEEecC-CCeEEEEEE
Q 009664 69 QKLTWLNHHLEKLWPYVNEA--ASELIKSSVEPVLEQYR-PFILSSLKFSKFTLGTVAPQFTGVSIIEDG-GSGVTMELE 144 (529)
Q Consensus 69 E~~~WlN~~l~~~Wp~~~~~--~~~~~~~~~~~~l~~~~-p~~i~~~~~~~~~lG~~~P~i~~i~~~~~~-~~~~~ld~~ 144 (529)
+.+-|||.++.++.--+.+. ..+.+++.++.++...+ |+++..+-..+++-|..||.|++.++.... ...-.++.|
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~d 413 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEID 413 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccc
Confidence 45889999999998755443 66778888888888754 779999999999999999999999998774 344578899
Q ss_pred EEEecCceEEEEE
Q 009664 145 MQWDANSSIILAI 157 (529)
Q Consensus 145 ~~~~~~~~i~l~~ 157 (529)
+.|.||..+.+..
T Consensus 414 i~y~~d~~~~i~~ 426 (795)
T KOG2238|consen 414 IEYRGDLTIIIET 426 (795)
T ss_pred eeecccccccccc
Confidence 9999986555443
No 291
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=67.30 E-value=1.1 Score=37.37 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHhheeeeeEeecchhhhhh
Q 009664 4 FFGLVVGLVVGLGIIVGFVRSENARSKLR 32 (529)
Q Consensus 4 ~~g~~~~~~~g~~l~~~~~~~~~~~~~~~ 32 (529)
+.|+++|+++|+++.+++++|.-+|.+|+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566666655554444443333343433
No 292
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=64.86 E-value=21 Score=32.20 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=41.1
Q ss_pred eeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCC----CC---CeeEEEEEeccc
Q 009664 438 SQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF----GK---DYMGRCILTLTR 493 (529)
Q Consensus 438 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~----~~---d~lG~~~i~L~~ 493 (529)
....|.|..++.+|.|+|++...++-. ....|.|+.++-... ++ ..+|..-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 457899999999999999988888633 455777888763321 11 358988888865
No 293
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=63.56 E-value=19 Score=32.53 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=39.3
Q ss_pred eEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCCC------CCeeEEEEEeccc
Q 009664 439 QKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG------KDYMGRCILTLTR 493 (529)
Q Consensus 439 ~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~------~d~lG~~~i~L~~ 493 (529)
.++|-+.. ..+|.|+|+|...++.. ....|.+++++..... ...+|.+.++|-+
T Consensus 54 ~~~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 49999999999988643 4668999999865321 2579999999987
No 294
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=59.66 E-value=46 Score=27.22 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=42.3
Q ss_pred CeeEeeecccCCCCCccCceEEEEeec-------CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce--eeeEEEc
Q 009664 437 ASQKRREVVNDCLNPIWNQTFDFVVED-------GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE--YTDCFEL 506 (529)
Q Consensus 437 ~~~~kT~v~~~t~nP~wne~f~f~v~~-------~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~--~~~w~~L 506 (529)
-+.+.|.++. ..+|.+|-+-.|.|.- .....+.|+++.... .+ +.+|.+.+++..++.+.. ....-.|
T Consensus 10 fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~i~~~~~l 87 (107)
T PF11618_consen 10 FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGERIHGSATL 87 (107)
T ss_dssp ---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S--EEEEEEE
T ss_pred eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCceEEEEEEE
Confidence 3456677776 8999999998888852 135689999998662 23 689999999999986543 4555555
Q ss_pred CC---CCccEEEEEEE
Q 009664 507 DG---TKSGKLKLHLK 519 (529)
Q Consensus 507 ~~---~~~G~i~l~~~ 519 (529)
.| ..-|.+...++
T Consensus 88 ~g~~~~~~g~l~y~~r 103 (107)
T PF11618_consen 88 VGVSGEDFGTLEYWIR 103 (107)
T ss_dssp -BSSS-TSEEEEEEEE
T ss_pred eccCCCeEEEEEEEEE
Confidence 43 34566665544
No 295
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=58.45 E-value=1.1e+02 Score=30.27 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=71.8
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCC--eeccEEEEEEecCCCCEEEEEEEECC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNP--IWNEHFEFIVEDESTQHLVVRIYDDE 336 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP--~Wne~f~~~v~~~~~~~l~i~v~d~~ 336 (529)
...=.|-|.|.+-.++.. ...-|+.+..+ ....+|..+.-+..- .-.+.....+. .++.+|++.+|-..
T Consensus 55 HRkF~LLVeI~EI~~i~k-----~khiyIef~~G---r~d~TT~~IpTsKK~RI~IqqRV~IkIR-QcDnTLkI~lfKKk 125 (508)
T PTZ00447 55 YRTFYLLVKINEIFNINK-----YKHIYIIFSTD---KYDFTTDEIPTNKKNRIHIDQRVDIKIR-QCDETLRVDLFTTK 125 (508)
T ss_pred cceeeEEEEehhhhcccc-----ceeEEEEEEcC---ceEEEccccccCcCceEEEeeeeeeeee-ecCceEEEEEEecc
Confidence 344567777777665542 34578888776 444555443322221 12232333332 24568999999876
Q ss_pred CCCCCceeEEEEEECcc--cCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 337 GIQSSELIGCAQVRLCE--LEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~--l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
- .+...||...+.+.. +...-+...||.+.+ +++..++|.+++.-
T Consensus 126 L-vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~k------DGq~~cRIqLSFhK 172 (508)
T PTZ00447 126 L-TKKVHIGQIKIDINASVISKSFPKNEWFVCFK------DGQEICKVQMSFYK 172 (508)
T ss_pred c-cceeEEEEEEecccHHHHhccCCccceEEEec------CCceeeeEEEEehh
Confidence 5 466889999999875 345556789999954 56778888888754
No 296
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.55 E-value=3.1 Score=44.67 Aligned_cols=94 Identities=10% Similarity=0.002 Sum_probs=55.6
Q ss_pred CCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccC-CCcee
Q 009664 282 KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE-PGKVK 360 (529)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~-~~~~~ 360 (529)
..+||+.+.+... +...+.+...+..|.|+++|...+... ..+.+.|+.......+.....+++-.+++. .....
T Consensus 27 al~~y~~v~vk~~--~~~~~~~~~~~~~~~~~~~F~~~v~~~--~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~ 102 (694)
T KOG0694|consen 27 ALQPYLAVELKVK--QGAENMTKVELRIPELRETFHVEVVAG--GAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQ 102 (694)
T ss_pred hhhhhheecccee--ecccccCCCCCCCchhhhheeeeeecC--CceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhh
Confidence 4688988887522 222344467899999999999997653 478889988764444443333333333332 12233
Q ss_pred eEEEEcccccccccCCccccEEEEEEEEE
Q 009664 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 361 ~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
..|..+. ..|++...+.+.
T Consensus 103 ~~w~~~~----------~~g~~~~~~~~~ 121 (694)
T KOG0694|consen 103 RLWVLIE----------ELGTLLKPAALT 121 (694)
T ss_pred hhccccc----------cccceeeeeccc
Confidence 4565542 236665555554
No 297
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=55.91 E-value=8.3 Score=29.13 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=15.9
Q ss_pred chhhhHHHHHHHhheeeeeE
Q 009664 3 FFFGLVVGLVVGLGIIVGFV 22 (529)
Q Consensus 3 ~~~g~~~~~~~g~~l~~~~~ 22 (529)
|++|+++|.++|.++.+++.
T Consensus 1 F~~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 67888888888888777665
No 298
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=52.70 E-value=46 Score=30.22 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=41.5
Q ss_pred eeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCC---------CC-CeeEEEEEeccc
Q 009664 438 SQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF---------GK-DYMGRCILTLTR 493 (529)
Q Consensus 438 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~---------~~-d~lG~~~i~L~~ 493 (529)
....|.|..++.+|.|+|++...++-. ....|.|+.++-... +. ..+|..-+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 357889999999999999988887633 455788888875411 11 358988899876
No 299
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=50.89 E-value=9.6 Score=32.35 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHhheeeeeE
Q 009664 4 FFGLVVGLVVGLGIIVGFV 22 (529)
Q Consensus 4 ~~g~~~~~~~g~~l~~~~~ 22 (529)
++||++|+++|+++.-++.
T Consensus 3 ~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5678888888888755443
No 300
>PF15179 Myc_target_1: Myc target protein 1
Probab=47.81 E-value=3.1 Score=36.83 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=19.1
Q ss_pred CcchhhhHHHHHHHhheeeeeEeec
Q 009664 1 MGFFFGLVVGLVVGLGIIVGFVRSE 25 (529)
Q Consensus 1 ~~~~~g~~~~~~~g~~l~~~~~~~~ 25 (529)
|.|.+..++||++|.++|+++.|..
T Consensus 23 laF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 23 LAFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999888776643
No 301
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=42.69 E-value=8.3 Score=28.01 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHhheeeeeEe
Q 009664 2 GFFFGLVVGLVVGLGIIVGFVR 23 (529)
Q Consensus 2 ~~~~g~~~~~~~g~~l~~~~~~ 23 (529)
|.+-|.++|+++.++|.++..+
T Consensus 13 avIaG~Vvgll~ailLIlf~iy 34 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLIY 34 (64)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777776654443
No 302
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=41.95 E-value=1.6e+02 Score=29.23 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=55.5
Q ss_pred EEEccCCeeEeeecccCCCCC--ccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccce--eeeEEEc
Q 009664 431 IELEKDASQKRREVVNDCLNP--IWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGE--YTDCFEL 506 (529)
Q Consensus 431 ~~~~~~~~~~kT~v~~~t~nP--~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~--~~~w~~L 506 (529)
+....+....+|..+.-+..- .-.+.....++. .+.+|.+.++-+...+..-||.+.+.+++=.-.+. -++||.+
T Consensus 78 Ief~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnkWy~c 156 (508)
T PTZ00447 78 IIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEWFVC 156 (508)
T ss_pred EEEEcCceEEEccccccCcCceEEEeeeeeeeeee-cCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccceEEE
Confidence 344456666667555433222 233444445543 56789999998887766889999999986333332 3899999
Q ss_pred C--CCCccEEEEEE
Q 009664 507 D--GTKSGKLKLHL 518 (529)
Q Consensus 507 ~--~~~~G~i~l~~ 518 (529)
. |...++|.|++
T Consensus 157 ~kDGq~~cRIqLSF 170 (508)
T PTZ00447 157 FKDGQEICKVQMSF 170 (508)
T ss_pred ecCCceeeeEEEEe
Confidence 6 34456666665
No 303
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=41.51 E-value=12 Score=32.40 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=12.5
Q ss_pred cchhhhHHHHHHHhheeeeeE
Q 009664 2 GFFFGLVVGLVVGLGIIVGFV 22 (529)
Q Consensus 2 ~~~~g~~~~~~~g~~l~~~~~ 22 (529)
|.+.|+.+.+++|+++.++|.
T Consensus 53 GvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 53 GVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred EEEecccHHHHHHHHHhheeE
Confidence 556676666677665544443
No 304
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=41.18 E-value=15 Score=28.76 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=31.2
Q ss_pred CCCCCCceecCCCcchHHHHHHHHHHchhhHHHHH
Q 009664 56 AEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAAS 90 (529)
Q Consensus 56 ~~~~p~w~~~~~~E~~~WlN~~l~~~Wp~~~~~~~ 90 (529)
..+||+|+--.|.---.-.|.+.+..|.+.+.+++
T Consensus 36 LGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~ 70 (108)
T KOG4092|consen 36 LGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYIN 70 (108)
T ss_pred ecccHHHHHhccCChHHHHHHHHHHHHHHHhheec
Confidence 46799999998888888999999999998888876
No 305
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=40.97 E-value=17 Score=40.40 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=60.9
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~ 336 (529)
...|.+.+.+.+|..+.. ...-||...+...+ .-+.+|.++.+|..|.||++|+..+.. .|..++..++++
T Consensus 756 l~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEKS 828 (1112)
T ss_pred ccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhhccc
Confidence 356999999999998863 34568877765222 235788999999999999999888765 345667777654
Q ss_pred C----------CCCCceeEEEEEECc
Q 009664 337 G----------IQSSELIGCAQVRLC 352 (529)
Q Consensus 337 ~----------~~~d~~lG~~~i~l~ 352 (529)
. ...+...|+..+.+.
T Consensus 829 ~~~~k~~~~~~~~~~~~~~~~~~~l~ 854 (1112)
T KOG4269|consen 829 TPVEKLIDSHSQNSQNEEKRSRMKLD 854 (1112)
T ss_pred chHHHhhhccchhhcccccccccccC
Confidence 2 223455666666654
No 306
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.21 E-value=1.6e+02 Score=25.78 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCCCC-eeccEEEEEEecC---CCCEEEEEEEECCCCCCCceeEEEEEECc
Q 009664 306 NDLNP-IWNEHFEFIVEDE---STQHLVVRIYDDEGIQSSELIGCAQVRLC 352 (529)
Q Consensus 306 ~t~nP-~Wne~f~~~v~~~---~~~~l~i~v~d~~~~~~d~~lG~~~i~l~ 352 (529)
+-.|| +||--++...... .-..|.+.||..|..++|-..|...+.+-
T Consensus 59 ~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 59 GADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred cCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 34455 7775555544332 12368899999999999999999988864
No 307
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=39.34 E-value=2.8e+02 Score=24.64 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=52.9
Q ss_pred EEEEEecCCCccCCCCCCCcEEEEEEecC-------CCC-eEeccccC-----CCCCCeeccEEEEEEecCC---CCEEE
Q 009664 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPL-------PEK-TKKSKTIN-----NDLNPIWNEHFEFIVEDES---TQHLV 329 (529)
Q Consensus 266 V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-------~~~-~~kT~~~~-----~t~nP~Wne~f~~~v~~~~---~~~l~ 329 (529)
=.|.+|.+.. ..+-||+..+.-. +.. ...|.+.. ++..-.||.-|++...... --.|.
T Consensus 6 G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 6 GEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 3466777553 3467998887521 112 34444432 2334589987777654332 24799
Q ss_pred EEEEECCCCCCCceeEEEEEECc
Q 009664 330 VRIYDDEGIQSSELIGCAQVRLC 352 (529)
Q Consensus 330 i~v~d~~~~~~d~~lG~~~i~l~ 352 (529)
++||..|..+++...|...+.|-
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEeC
Confidence 99999999999999988877763
No 308
>PF14851 FAM176: FAM176 family
Probab=36.24 E-value=14 Score=32.30 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.6
Q ss_pred chhhhHHHHHHHhheeeeeEee
Q 009664 3 FFFGLVVGLVVGLGIIVGFVRS 24 (529)
Q Consensus 3 ~~~g~~~~~~~g~~l~~~~~~~ 24 (529)
|+.|+.+||++.|++++.-..+
T Consensus 26 Fv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhee
Confidence 6788999999999987765554
No 309
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=33.53 E-value=22 Score=26.79 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.3
Q ss_pred cchhhhHHHHHHHhheee
Q 009664 2 GFFFGLVVGLVVGLGIIV 19 (529)
Q Consensus 2 ~~~~g~~~~~~~g~~l~~ 19 (529)
||++|.++|.++|+++.=
T Consensus 4 g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 788999999999998765
No 310
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=33.39 E-value=5.5e+02 Score=26.70 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=50.6
Q ss_pred cCCCCCeEeeEEEEecCCCeEEEEEEEEEecCceEEEEEEeeecceeeEEEEEEEEEEEEEEEEecCCCCCCcceeEEEE
Q 009664 119 LGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYS 198 (529)
Q Consensus 119 lG~~~P~i~~i~~~~~~~~~~~ld~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~v~~~ 198 (529)
.|..--+|.++++|. .++.+++.+++.=. +.|++.+.-+|..+.--.. +.
T Consensus 280 ~~~~~v~v~~v~v~g-~~~rl~i~~~~~g~-------------------------~~G~i~l~G~P~yD~~~~~----l~ 329 (427)
T PF14356_consen 280 SGGKKVTVKSVSVYG-SGDRLVIALDVTGS-------------------------LNGTIYLSGRPVYDPATQT----LR 329 (427)
T ss_pred CCCceEEEEEEEEEe-cCCcEEEEEEEEEE-------------------------EEEEEEEEEEEEECCCCCE----EE
Confidence 677777888888887 44555543333222 5566666666655543221 23
Q ss_pred eccceeeeEEEEEcccccccCCc-chHHHHHHHHHHHhhhccccc
Q 009664 199 LREKKKLDFKLKVVGGDISTIPG-LSDSIEATIHDAIEDSITWPV 242 (529)
Q Consensus 199 f~~~p~l~f~l~~~g~~~~~~P~-l~~~~~~~i~~~i~~~~~~P~ 242 (529)
| .++||.+..-+. +-+ ..-++++.|++.|++.++.|-
T Consensus 330 l---~dld~~~~t~~~----l~~~a~wl~~~~i~~~i~~~~~~~l 367 (427)
T PF14356_consen 330 L---EDLDFDLDTKNF----LLKTAAWLLHGRIRKAIEEKLVFDL 367 (427)
T ss_pred E---EeeEEEecccch----HHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 3 367777754321 222 233668888888888876653
No 311
>PRK11677 hypothetical protein; Provisional
Probab=32.24 E-value=32 Score=29.41 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHhheee
Q 009664 4 FFGLVVGLVVGLGIIV 19 (529)
Q Consensus 4 ~~g~~~~~~~g~~l~~ 19 (529)
++||++|+++|.++.-
T Consensus 7 ~i~livG~iiG~~~~R 22 (134)
T PRK11677 7 LIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4567777777777654
No 312
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=31.46 E-value=1.4e+02 Score=30.54 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=41.1
Q ss_pred CEEEEEEEECCCC-------CCCeeEEEEEecccccccce----eeeEEEcCCCC-------ccEEEEEEEEEeCCCC
Q 009664 467 DMLIAEVWDHDTF-------GKDYMGRCILTLTRVILEGE----YTDCFELDGTK-------SGKLKLHLKWMPQPIY 526 (529)
Q Consensus 467 ~~L~i~V~D~~~~-------~~d~lG~~~i~L~~l~~~~~----~~~w~~L~~~~-------~G~i~l~~~~~~~~~~ 526 (529)
..|+|.||..... +..+||.+.++|+-=-..+. ++.|..+...+ ..++||.++-.|.+-|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDPRf 172 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDPRF 172 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCCee
Confidence 4688888875532 23799999999883222221 48999996542 4788888888876654
No 313
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=30.83 E-value=69 Score=32.96 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=31.3
Q ss_pred eeEEEEEECcc-cCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 343 LIGCAQVRLCE-LEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 343 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
.+|++.+++.. +..+...+.|+++.... ......|.+ +++.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~---~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVD---NKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCC---CCCcCcceE-EEEEee
Confidence 48999999999 67778899999986532 123344666 677775
No 314
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.49 E-value=10 Score=31.75 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=17.0
Q ss_pred cchhhhHHHHHHHhheeeeeEeecchhhh
Q 009664 2 GFFFGLVVGLVVGLGIIVGFVRSENARSK 30 (529)
Q Consensus 2 ~~~~g~~~~~~~g~~l~~~~~~~~~~~~~ 30 (529)
|-++|..+|++.-++|.+++.+++.+|..
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 56889999996666555555555554543
No 315
>PF15102 TMEM154: TMEM154 protein family
Probab=27.46 E-value=26 Score=30.17 Aligned_cols=7 Identities=29% Similarity=0.733 Sum_probs=4.3
Q ss_pred hHHHHHH
Q 009664 71 LTWLNHH 77 (529)
Q Consensus 71 ~~WlN~~ 77 (529)
-.|+|+.
T Consensus 131 dkwm~s~ 137 (146)
T PF15102_consen 131 DKWMNSM 137 (146)
T ss_pred HhHHHhh
Confidence 3577764
No 316
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=24.92 E-value=1.2e+02 Score=25.18 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=18.6
Q ss_pred CcchhhhHHHHHHHhheeeeeE
Q 009664 1 MGFFFGLVVGLVVGLGIIVGFV 22 (529)
Q Consensus 1 ~~~~~g~~~~~~~g~~l~~~~~ 22 (529)
.+|++|.++|.++|.+..++|.
T Consensus 5 ~~~l~G~liGgiiGa~aaLL~A 26 (115)
T COG4980 5 KDFLFGILIGGIIGAAAALLFA 26 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHhC
Confidence 3689999999999999777775
No 317
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.81 E-value=39 Score=36.67 Aligned_cols=74 Identities=15% Similarity=-0.093 Sum_probs=44.1
Q ss_pred eeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc-ceeeeEEEcCCCCccEEEEEE
Q 009664 441 RREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE-GEYTDCFELDGTKSGKLKLHL 518 (529)
Q Consensus 441 kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~-~~~~~w~~L~~~~~G~i~l~~ 518 (529)
++.+.+.+.+|.|+++|...+.. ...+.|.|+.+...+. ...-.+++-.+++... .....|..++. .|++...+
T Consensus 43 ~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~~~~~--~g~~~~~~ 118 (694)
T KOG0694|consen 43 ENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWVLIEE--LGTLLKPA 118 (694)
T ss_pred cccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcccccc--ccceeeee
Confidence 34446779999999999998764 4568888888764333 2333333333343321 12256777665 35555444
No 318
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=20.76 E-value=6e+02 Score=26.23 Aligned_cols=64 Identities=20% Similarity=0.349 Sum_probs=40.4
Q ss_pred CEEEEEEEECCC-----C-CCCceeEEEEEECccc-CCC---ceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 326 QHLVVRIYDDEG-----I-QSSELIGCAQVRLCEL-EPG---KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 326 ~~l~i~v~d~~~-----~-~~d~~lG~~~i~l~~l-~~~---~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
..|+|.||.-.. + ....+||.+.++|+-- ..+ ..+..|..+-+... ........++|+.+.-.|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~-~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQ-GSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCC-CCCCCCcceEEEEEeccC
Confidence 469999998332 2 4568999999998731 122 23567998865321 111234678998886654
No 319
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=20.13 E-value=44 Score=24.66 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=9.3
Q ss_pred hhhHHHHHHHhheee
Q 009664 5 FGLVVGLVVGLGIIV 19 (529)
Q Consensus 5 ~g~~~~~~~g~~l~~ 19 (529)
+|++.|+++|+.-++
T Consensus 36 IGvi~gi~~~~lt~l 50 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYL 50 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777776666433
Done!