Query 009665
Match_columns 529
No_of_seqs 404 out of 2694
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 9.3E-77 3.2E-81 612.9 45.7 517 1-528 1-529 (529)
2 3ul1_B Importin subunit alpha- 100.0 1.2E-65 4.1E-70 526.9 47.3 488 30-528 15-510 (510)
3 4b8j_A Importin subunit alpha- 100.0 1E-64 3.5E-69 525.1 48.0 500 1-501 3-503 (528)
4 1wa5_B Importin alpha subunit; 100.0 1.5E-59 5.1E-64 486.3 41.6 492 5-499 10-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 2.7E-47 9.3E-52 386.9 46.3 426 72-499 21-448 (450)
6 3nmz_A APC variant protein; pr 100.0 3.6E-40 1.2E-44 326.7 29.3 367 68-442 29-452 (458)
7 3now_A UNC-45 protein, SD10334 100.0 1E-39 3.5E-44 340.9 31.0 364 72-443 378-785 (810)
8 1xm9_A Plakophilin 1; armadill 100.0 5.4E-39 1.9E-43 324.1 31.9 365 115-497 3-452 (457)
9 3tpo_A Importin subunit alpha- 100.0 2.8E-38 9.7E-43 325.8 35.7 370 69-442 117-499 (529)
10 3ul1_B Importin subunit alpha- 100.0 3.2E-38 1.1E-42 323.4 35.4 370 69-442 98-480 (510)
11 1jdh_A Beta-catenin; beta-cate 100.0 3.2E-37 1.1E-41 319.4 37.6 404 69-492 99-528 (529)
12 3now_A UNC-45 protein, SD10334 100.0 1.2E-37 4.1E-42 325.4 32.6 405 73-495 332-783 (810)
13 2z6h_A Catenin beta-1, beta-ca 100.0 9.7E-37 3.3E-41 322.3 38.5 406 70-497 97-550 (644)
14 1xm9_A Plakophilin 1; armadill 100.0 3.3E-37 1.1E-41 311.1 25.9 362 72-442 3-451 (457)
15 2jdq_A Importin alpha-1 subuni 100.0 3E-36 1E-40 305.6 31.2 367 71-442 64-445 (450)
16 1wa5_B Importin alpha subunit; 100.0 1.2E-35 4E-40 307.3 36.0 369 70-442 129-512 (530)
17 4b8j_A Importin subunit alpha- 100.0 3.1E-35 1.1E-39 304.1 37.4 365 114-494 74-443 (528)
18 3l6x_A Catenin delta-1; cateni 100.0 5.9E-36 2E-40 302.7 30.0 365 71-443 48-479 (584)
19 2z6g_A B-catenin; FULL-length, 100.0 4.9E-34 1.7E-38 306.0 42.3 394 70-485 233-654 (780)
20 3l6x_A Catenin delta-1; cateni 100.0 3.1E-35 1.1E-39 297.5 30.9 370 110-496 44-478 (584)
21 3nmz_A APC variant protein; pr 100.0 8.4E-34 2.9E-38 281.1 27.1 328 68-399 67-452 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 1.9E-33 6.5E-38 291.1 30.4 403 71-494 59-489 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 3E-32 1E-36 287.9 32.9 403 71-494 56-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 4.1E-32 1.4E-36 291.1 31.8 402 71-493 192-621 (780)
25 3nmw_A APC variant protein; AR 100.0 3.7E-30 1.3E-34 247.9 25.3 273 169-443 44-337 (354)
26 3nmw_A APC variant protein; AR 100.0 4.6E-30 1.6E-34 247.3 22.6 269 129-400 46-337 (354)
27 4hxt_A De novo protein OR329; 100.0 6.5E-27 2.2E-31 217.5 24.7 240 114-356 2-242 (252)
28 4db8_A Armadillo-repeat protei 100.0 5E-27 1.7E-31 218.3 20.9 240 113-355 11-251 (252)
29 4hxt_A De novo protein OR329; 100.0 2.3E-26 7.7E-31 213.8 24.4 241 157-399 2-243 (252)
30 1xqr_A HSPBP1 protein; armadil 99.9 1.8E-26 6.1E-31 216.3 22.2 235 255-497 54-290 (296)
31 4db8_A Armadillo-repeat protei 99.9 1.9E-26 6.6E-31 214.4 20.6 239 71-312 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 5.6E-23 1.9E-27 210.6 29.9 400 72-495 256-729 (778)
33 3opb_A SWI5-dependent HO expre 99.9 2.8E-23 9.6E-28 212.8 25.6 358 72-442 297-730 (778)
34 4db6_A Armadillo repeat protei 99.9 4.5E-23 1.5E-27 185.8 23.8 198 240-439 11-208 (210)
35 4db6_A Armadillo repeat protei 99.9 1.5E-22 5.1E-27 182.5 21.1 199 112-312 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 4.8E-22 1.7E-26 186.2 22.9 188 129-317 54-243 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 2E-20 6.7E-25 167.5 15.4 197 115-313 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 8.7E-20 3E-24 163.3 13.9 196 72-271 9-230 (233)
39 1b3u_A Protein (protein phosph 99.8 5.9E-18 2E-22 177.1 25.8 343 114-493 242-586 (588)
40 4fdd_A Transportin-1; heat rep 99.8 3.4E-18 1.2E-22 186.7 22.0 353 73-443 92-474 (852)
41 1b3u_A Protein (protein phosph 99.8 9.8E-18 3.4E-22 175.4 23.2 382 72-495 165-549 (588)
42 4fdd_A Transportin-1; heat rep 99.8 1.9E-17 6.7E-22 180.6 25.8 394 73-494 50-471 (852)
43 2vgl_B AP-2 complex subunit be 99.8 1.7E-17 5.9E-22 172.7 22.9 332 72-442 87-421 (591)
44 3grl_A General vesicular trans 99.8 5.9E-15 2E-19 147.6 35.2 416 71-499 60-555 (651)
45 2vgl_B AP-2 complex subunit be 99.7 1.6E-15 5.4E-20 157.9 27.6 332 71-442 49-384 (591)
46 1oyz_A Hypothetical protein YI 99.7 4.8E-16 1.6E-20 146.3 20.4 258 111-436 20-278 (280)
47 3grl_A General vesicular trans 99.7 1.8E-14 6.1E-19 144.1 31.9 368 71-445 21-454 (651)
48 1w63_A Adapter-related protein 99.7 4E-15 1.4E-19 155.4 28.7 227 15-273 18-266 (618)
49 1oyz_A Hypothetical protein YI 99.7 6.2E-15 2.1E-19 138.7 21.6 254 71-393 23-278 (280)
50 2bpt_A Importin beta-1 subunit 99.7 6E-15 2.1E-19 161.4 24.2 354 72-442 325-713 (861)
51 2bpt_A Importin beta-1 subunit 99.7 1.5E-14 5.1E-19 158.3 26.0 401 73-494 371-811 (861)
52 1ibr_B P95, importin beta-1 su 99.6 2.2E-14 7.6E-19 145.1 20.1 390 73-495 3-438 (462)
53 1qgr_A Protein (importin beta 99.6 4.2E-14 1.4E-18 155.0 23.5 396 73-492 174-677 (876)
54 1qgr_A Protein (importin beta 99.6 3E-14 1E-18 156.2 21.7 405 73-494 368-827 (876)
55 1w63_A Adapter-related protein 99.6 2.3E-14 7.9E-19 149.7 19.6 289 71-398 107-415 (618)
56 1u6g_C TIP120 protein, CAND1; 99.6 2.5E-13 8.5E-18 154.1 27.1 406 72-495 7-464 (1230)
57 1ibr_B P95, importin beta-1 su 99.6 1.8E-14 6E-19 145.9 15.4 358 73-443 37-440 (462)
58 1u6g_C TIP120 protein, CAND1; 99.5 3E-13 1E-17 153.4 21.3 398 72-493 87-547 (1230)
59 3ltj_A Alpharep-4; protein eng 99.5 4.3E-12 1.5E-16 112.8 19.2 184 157-396 14-197 (201)
60 3ltm_A Alpha-REP4; protein eng 99.4 3.5E-12 1.2E-16 114.3 17.8 188 156-399 18-205 (211)
61 2vgl_A Adaptor protein complex 99.4 2.1E-10 7.1E-15 119.4 33.5 329 71-441 74-434 (621)
62 3ltm_A Alpha-REP4; protein eng 99.4 3.7E-12 1.3E-16 114.1 17.7 188 112-356 17-204 (211)
63 3ltj_A Alpharep-4; protein eng 99.4 5.1E-12 1.7E-16 112.3 17.0 186 112-354 12-197 (201)
64 2vgl_A Adaptor protein complex 99.4 2.6E-11 9E-16 126.1 19.9 367 72-494 112-509 (621)
65 4ady_A RPN2, 26S proteasome re 99.1 2.8E-09 9.5E-14 112.2 21.1 275 72-400 393-679 (963)
66 2db0_A 253AA long hypothetical 99.1 6.2E-09 2.1E-13 85.5 18.4 218 155-398 30-247 (253)
67 4gmo_A Putative uncharacterize 99.1 1.6E-09 5.4E-14 114.3 18.7 216 114-354 35-257 (684)
68 3b2a_A TON_1937, putative unch 99.0 1.1E-08 3.8E-13 87.9 15.9 226 240-492 32-259 (265)
69 3tjz_B Coatomer subunit gamma; 99.0 3.9E-08 1.3E-12 93.3 20.0 277 72-393 69-349 (355)
70 4ady_A RPN2, 26S proteasome re 98.9 3.5E-07 1.2E-11 96.4 25.5 270 115-440 393-676 (963)
71 2db0_A 253AA long hypothetical 98.9 3.4E-07 1.2E-11 75.3 19.8 217 111-355 29-246 (253)
72 4gmo_A Putative uncharacterize 98.9 6.2E-09 2.1E-13 109.7 12.2 197 240-440 34-258 (684)
73 2qk2_A LP04448P; mini spindles 98.8 2.8E-08 9.4E-13 90.8 11.4 187 202-399 18-207 (242)
74 2qk2_A LP04448P; mini spindles 98.8 8.4E-09 2.9E-13 94.2 7.9 189 242-442 16-207 (242)
75 1ho8_A Vacuolar ATP synthase s 98.8 1.9E-06 6.7E-11 83.4 23.9 322 156-493 76-475 (480)
76 3tjz_B Coatomer subunit gamma; 98.7 9E-08 3.1E-12 90.8 12.5 243 71-350 104-348 (355)
77 3b2a_A TON_1937, putative unch 98.7 3E-07 1E-11 79.2 13.5 185 283-496 33-220 (265)
78 2iw3_A Elongation factor 3A; a 98.6 7E-06 2.4E-10 87.8 23.8 304 70-396 13-323 (986)
79 2qk1_A Protein STU2; STU2P, XM 98.6 2.9E-07 9.9E-12 83.9 11.4 193 161-355 20-220 (249)
80 2qk1_A Protein STU2; STU2P, XM 98.6 5.8E-07 2E-11 81.9 13.3 191 204-397 21-220 (249)
81 1te4_A Conserved protein MTH18 98.6 1.2E-08 4.3E-13 83.2 1.2 120 282-437 11-130 (131)
82 1wa5_C Importin alpha RE-expor 98.5 6.2E-05 2.1E-09 82.9 27.8 343 75-441 89-526 (960)
83 1te4_A Conserved protein MTH18 98.5 3.1E-08 1E-12 80.8 1.1 121 113-268 11-131 (131)
84 2iw3_A Elongation factor 3A; a 98.4 1.2E-05 4.2E-10 86.0 20.6 299 162-495 19-325 (986)
85 2x1g_F Cadmus; transport prote 98.4 5.4E-05 1.9E-09 83.6 25.6 395 83-493 256-721 (971)
86 2x1g_F Cadmus; transport prote 98.4 2.8E-05 9.7E-10 85.8 22.8 329 86-441 204-616 (971)
87 1ho8_A Vacuolar ATP synthase s 98.4 0.00021 7.2E-09 69.4 25.0 324 113-441 76-477 (480)
88 4hat_C Exportin-1; heat repeat 98.3 0.00013 4.5E-09 79.9 26.4 339 82-442 206-620 (1023)
89 4hat_C Exportin-1; heat repeat 98.3 7E-05 2.4E-09 82.0 23.9 315 115-444 195-573 (1023)
90 1wa5_C Importin alpha RE-expor 98.3 1.7E-05 5.9E-10 87.3 18.2 338 82-436 416-787 (960)
91 3m1i_C Exportin-1; heat repeat 98.3 0.00049 1.7E-08 76.5 30.0 356 72-443 139-572 (1049)
92 2x19_B Importin-13; nuclear tr 98.2 0.00051 1.7E-08 75.8 28.0 398 73-494 243-714 (963)
93 3m1i_C Exportin-1; heat repeat 98.2 0.00067 2.3E-08 75.4 28.0 341 82-442 206-620 (1049)
94 2x19_B Importin-13; nuclear tr 98.2 7.4E-05 2.5E-09 82.5 20.1 338 124-495 459-847 (963)
95 3dad_A FH1/FH2 domain-containi 98.2 5E-05 1.7E-09 70.0 15.3 186 244-430 121-326 (339)
96 3dad_A FH1/FH2 domain-containi 98.0 0.00015 5.1E-09 66.8 15.3 189 287-484 122-326 (339)
97 3gjx_A Exportin-1; transport, 98.0 0.0018 6.2E-08 70.8 25.5 357 119-490 211-644 (1073)
98 3ibv_A Exportin-T; karyopherin 97.9 6.9E-05 2.4E-09 81.9 12.2 345 81-442 203-630 (980)
99 3ibv_A Exportin-T; karyopherin 97.7 0.00061 2.1E-08 74.5 16.7 307 126-444 205-570 (980)
100 4ffb_C Protein STU2; tubulin f 97.6 0.0012 4.1E-08 61.0 14.6 195 69-272 8-214 (278)
101 3gjx_A Exportin-1; transport, 97.6 0.021 7.1E-07 62.5 25.7 296 82-400 218-598 (1073)
102 3oc3_A Helicase MOT1, MOT1; re 97.4 0.00052 1.8E-08 67.1 8.8 245 71-350 174-431 (800)
103 2of3_A ZYG-9; multifunctional 97.3 0.0015 5.1E-08 58.9 11.2 181 245-442 50-238 (266)
104 2of3_A ZYG-9; multifunctional 97.3 0.0029 1E-07 57.0 13.0 177 161-355 50-236 (266)
105 1upk_A MO25 protein; transfera 97.3 0.038 1.3E-06 50.9 20.2 205 277-493 72-282 (341)
106 4ffb_C Protein STU2; tubulin f 97.3 0.011 3.9E-07 54.4 16.8 189 288-495 14-213 (278)
107 3oc3_A Helicase MOT1, MOT1; re 97.3 0.004 1.4E-07 61.1 13.5 244 115-393 175-432 (800)
108 1upk_A MO25 protein; transfera 97.2 0.025 8.5E-07 52.1 17.3 202 152-356 73-284 (341)
109 1lrv_A LRV, leucine-rich repea 97.1 0.00018 6.3E-09 64.5 2.3 185 121-435 57-241 (244)
110 3c2g_A SYS-1 protein; beta-cat 97.1 0.034 1.2E-06 51.0 16.7 292 182-492 267-616 (619)
111 1lrv_A LRV, leucine-rich repea 97.0 0.00028 9.6E-09 63.3 3.0 185 79-393 58-242 (244)
112 3c2g_A SYS-1 protein; beta-cat 97.0 0.19 6.6E-06 46.1 21.2 179 258-439 260-472 (619)
113 3u0r_A Apoptosis inhibitor 5; 97.0 0.047 1.6E-06 52.8 18.2 247 169-442 40-300 (507)
114 2fv2_A RCD1 required for cell 97.0 0.04 1.4E-06 48.5 15.7 185 254-441 14-225 (268)
115 2fv2_A RCD1 required for cell 96.9 0.019 6.4E-07 50.6 13.2 195 73-273 5-227 (268)
116 3l9t_A Putative uncharacterize 96.2 0.13 4.4E-06 45.0 13.9 145 115-281 72-218 (240)
117 3u0r_A Apoptosis inhibitor 5; 96.2 1 3.4E-05 43.7 22.7 297 118-444 33-362 (507)
118 3eg5_B Protein diaphanous homo 95.7 1 3.6E-05 43.1 19.5 157 74-232 69-249 (383)
119 3a6p_A Exportin-5; exportin-5, 95.5 2.3 7.7E-05 47.8 24.2 298 73-398 13-381 (1204)
120 2f31_A Diaphanous protein homo 95.5 0.69 2.4E-05 40.9 16.0 140 90-231 20-182 (233)
121 2f31_A Diaphanous protein homo 95.4 0.28 9.6E-06 43.5 13.3 163 315-485 34-219 (233)
122 3l9t_A Putative uncharacterize 95.3 0.13 4.5E-06 44.9 10.4 134 284-444 72-211 (240)
123 3ebb_A Phospholipase A2-activa 95.0 0.83 2.8E-05 42.1 15.6 174 115-294 104-287 (304)
124 3ebb_A Phospholipase A2-activa 95.0 1.3 4.5E-05 40.8 16.9 185 286-490 106-302 (304)
125 1lsh_A Lipovitellin (LV-1N, LV 94.8 2.3 7.9E-05 46.8 21.1 172 201-401 393-580 (1056)
126 3a6p_A Exportin-5; exportin-5, 94.6 1.3 4.5E-05 49.7 18.7 282 129-440 27-380 (1204)
127 3eg5_B Protein diaphanous homo 94.5 0.51 1.7E-05 45.3 13.3 162 314-483 99-283 (383)
128 1lsh_A Lipovitellin (LV-1N, LV 94.3 0.76 2.6E-05 50.6 15.9 134 242-395 392-541 (1056)
129 2bnx_A Diaphanous protein homo 93.9 3.1 0.0001 39.9 17.3 140 91-232 25-187 (386)
130 2bnx_A Diaphanous protein homo 93.5 1.9 6.4E-05 41.4 15.1 161 316-484 39-222 (386)
131 3gs3_A Symplekin, LD45768P; he 92.6 5.4 0.00019 35.5 21.1 99 75-185 19-118 (257)
132 3o2t_A Symplekin; heat repeat, 91.2 10 0.00035 35.9 22.8 89 86-185 40-128 (386)
133 3fga_B Serine/threonine-protei 90.5 5.3 0.00018 38.1 13.9 235 150-398 122-367 (403)
134 2p8q_B Snurportin-1; heat repe 90.1 0.2 6.9E-06 29.7 2.4 39 11-50 2-40 (40)
135 3qml_C Protein SLS1, nucleotid 89.9 2 6.8E-05 39.0 9.8 133 299-440 44-189 (315)
136 1vdy_A Hypothetical protein (R 88.6 1.9 6.4E-05 34.3 7.8 76 412-498 50-134 (140)
137 3qml_C Protein SLS1, nucleotid 88.2 6 0.0002 35.9 11.6 151 241-397 22-189 (315)
138 2npp_B PP2A, B subunit, serine 86.4 12 0.00041 36.3 13.5 236 149-398 154-400 (449)
139 1x5b_A Signal transducing adap 83.5 3.5 0.00012 33.9 7.3 73 412-495 53-126 (163)
140 3ldz_A STAM-1, signal transduc 83.0 2.4 8.1E-05 33.9 5.9 72 369-440 43-114 (140)
141 1mhq_A ADP-ribosylation factor 82.1 3.6 0.00012 33.2 6.7 71 369-439 39-115 (148)
142 3g2s_A C-terminal fragment of 81.9 4 0.00014 32.9 6.9 72 369-440 49-126 (149)
143 1x5b_A Signal transducing adap 81.6 3 0.0001 34.3 6.1 71 369-439 53-124 (163)
144 2npp_B PP2A, B subunit, serine 81.3 32 0.0011 33.3 14.0 238 107-362 155-406 (449)
145 3ldz_A STAM-1, signal transduc 81.0 3.6 0.00012 32.9 6.3 72 412-494 43-114 (140)
146 1juq_A ADP-ribosylation factor 80.9 5.8 0.0002 32.9 7.7 73 412-495 51-129 (171)
147 1mhq_A ADP-ribosylation factor 80.6 2.4 8.2E-05 34.2 5.2 74 71-144 38-116 (148)
148 3g2s_A C-terminal fragment of 79.3 2.9 9.9E-05 33.8 5.2 73 71-144 48-126 (149)
149 3o2t_A Symplekin; heat repeat, 78.9 12 0.0004 35.6 10.0 118 368-493 63-182 (386)
150 3gs3_A Symplekin, LD45768P; he 78.5 36 0.0012 30.2 15.5 129 256-396 30-172 (257)
151 1juq_A ADP-ribosylation factor 78.2 4.1 0.00014 33.8 6.0 71 369-439 51-127 (171)
152 1vsy_5 Proteasome activator BL 76.4 9.6 0.00033 41.5 9.8 188 158-355 134-365 (997)
153 1vsy_5 Proteasome activator BL 75.5 13 0.00043 40.5 10.4 221 201-441 135-366 (997)
154 3zyq_A Hepatocyte growth facto 74.0 2.3 7.9E-05 37.2 3.5 74 71-144 45-118 (226)
155 1vsy_4 Proteasome activator BL 71.4 1E+02 0.0036 32.4 15.9 111 158-269 340-454 (799)
156 1dvp_A HRS, hepatocyte growth 67.7 3.7 0.00013 35.8 3.4 74 71-144 42-115 (220)
157 3zyq_A Hepatocyte growth facto 66.7 15 0.00052 32.0 7.1 72 412-494 46-118 (226)
158 1dvp_A HRS, hepatocyte growth 66.0 16 0.00056 31.6 7.3 72 412-494 43-115 (220)
159 2jak_A Serine/threonine-protei 65.1 31 0.0011 32.7 9.3 192 151-350 168-362 (392)
160 3ut4_A CTHE_2751, putative unc 60.0 28 0.00096 27.2 6.6 94 369-494 32-130 (134)
161 1elk_A Target of MYB1; superhe 59.8 28 0.00096 28.2 7.1 72 412-494 54-130 (157)
162 1elk_A Target of MYB1; superhe 58.9 21 0.00073 28.9 6.2 72 369-440 54-130 (157)
163 1vdy_A Hypothetical protein (R 56.3 32 0.0011 27.2 6.5 73 369-441 50-131 (140)
164 3gae_A Protein DOA1; UFD3, CDC 51.5 53 0.0018 29.1 8.1 102 166-271 99-218 (253)
165 3jxy_A Alkylpurine DNA glycosy 51.4 1.2E+02 0.0041 26.2 10.7 138 245-409 65-206 (232)
166 2b6c_A Hypothetical protein EF 51.4 1.2E+02 0.004 26.1 10.7 135 245-405 59-195 (220)
167 2jak_A Serine/threonine-protei 50.7 50 0.0017 31.3 8.0 187 279-489 170-362 (392)
168 2xpp_A IWS1, ECU08_0440; trans 48.3 58 0.002 25.9 6.9 76 402-493 52-135 (145)
169 3l3f_X Protein DOA1, DOA1/UFD3 47.3 67 0.0023 30.1 8.3 129 132-271 180-327 (362)
170 3pst_A Protein DOA1; protein d 45.3 98 0.0034 29.6 9.2 130 132-272 243-391 (425)
171 3gjx_B Snurportin-1; transport 45.2 4.6 0.00016 37.3 0.0 44 8-52 28-71 (365)
172 3pst_A Protein DOA1; protein d 43.6 39 0.0013 32.4 6.2 103 293-398 272-390 (425)
173 3fga_B Serine/threonine-protei 43.3 2.2E+02 0.0076 27.0 18.3 228 240-497 128-369 (403)
174 3l3f_X Protein DOA1, DOA1/UFD3 42.9 36 0.0012 31.9 5.7 103 293-398 209-327 (362)
175 3gae_A Protein DOA1; UFD3, CDC 41.3 25 0.00086 31.2 4.3 101 294-397 101-217 (253)
176 2b6c_A Hypothetical protein EF 39.3 1.8E+02 0.0062 24.8 11.0 98 253-366 102-199 (220)
177 3nfq_A Transcription factor IW 36.2 1.1E+02 0.0038 25.0 6.9 77 402-494 67-151 (170)
178 1wjt_A Transcription elongatio 36.0 46 0.0016 24.7 4.3 38 458-495 47-85 (103)
179 2xpp_A IWS1, ECU08_0440; trans 35.0 91 0.0031 24.8 6.1 78 316-397 52-136 (145)
180 3rru_A TOM1L1 protein; structu 32.2 89 0.0031 25.0 5.8 72 369-440 54-130 (152)
181 3nfq_A Transcription factor IW 28.8 1.6E+02 0.0056 24.0 6.7 79 315-397 66-151 (170)
182 1sz9_A PCF11 protein; RNA poly 24.8 1.7E+02 0.0059 23.1 6.2 71 326-397 44-114 (144)
183 1w9c_A CRM1 protein, exportin 23.7 4.2E+02 0.014 24.2 15.8 179 299-494 45-245 (321)
184 1a92_A Delta antigen; leucine 23.5 71 0.0024 19.6 2.7 19 24-42 11-29 (50)
185 1vsy_4 Proteasome activator BL 22.7 6.8E+02 0.023 26.3 12.7 111 284-397 340-455 (799)
186 2g7o_A Protein TRAM; four heli 22.3 84 0.0029 21.2 3.2 20 479-498 50-69 (70)
187 4atg_A TAF6; transcription, TF 22.0 3.5E+02 0.012 22.6 10.6 128 200-335 41-178 (196)
188 3jxy_A Alkylpurine DNA glycosy 21.5 3.8E+02 0.013 22.9 11.0 140 118-282 65-207 (232)
189 3rru_A TOM1L1 protein; structu 21.3 62 0.0021 26.0 3.0 74 71-144 53-130 (152)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=9.3e-77 Score=612.95 Aligned_cols=517 Identities=45% Similarity=0.751 Sum_probs=403.9
Q ss_pred CCCCCCC-ccHHHhhhccC-CCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCC--Cccch-hhhhhhhhccHHH
Q 009665 1 MSLRPNA-RTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--PLTNS-AALDNKKLESLPA 75 (529)
Q Consensus 1 ~~~~~~~-~~~~~~~~~k~-~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~--~~~~~-~~~~~~~~~~l~~ 75 (529)
|+.+++. .++.|+++||+ |+|++|+||||+++.++|||+||++++.|||+.....+. .+... ..........++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 7888876 56899999998 899999999999999999999999999999976433222 11111 1111112246899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009665 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (529)
Q Consensus 76 l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 155 (529)
+++.++|+|++.|..|+..++++++.+++++++.+++.|++|.|+++|...+++.++..|+|+|+||+.++++.+..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999888999999999999999999987666999999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch----hHHHHHHHHHHHhhhhcCC
Q 009665 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~ 231 (529)
.|++|.|+.+|.+++.++++.|+|+|+||+.+++.+|+.+.+.|++++|+.++.... ...+.+.++|++++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995322 3467899999999999987
Q ss_pred -CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665 232 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (529)
Q Consensus 232 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l 310 (529)
+........+++|.|+.++.+++++++..++|+|++++....+....+++.|+++.|+.+|.++++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 5666677789999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 009665 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 390 (529)
+.+++.....+++.|+++.|..+|.++ ++.++++|+|+|+|++.+++.+...+++.|++|.|+.++.+++++++++|+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHH
Q 009665 391 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI 470 (529)
Q Consensus 391 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l 470 (529)
+|+|++.+++++++.+|++.|+++.|+++|.++|++++..++++|.+|+..+++.. ..+.+..+|+++||+++|
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~i 473 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKI 473 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc------ChHHHHHHHHHCCcHHHH
Confidence 99999998899999999999999999999999999999999999999999887543 357789999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhCCCCCCCCC--CCCCCCCCCccccCCCCCCCCCCCCcC
Q 009665 471 ENLQSHDNTEIYEKAVKILETYWVEEDEDEP--LPPGDATQAGFGFAGNGLPVPSGGFNF 528 (529)
Q Consensus 471 ~~L~~~~~~~v~~~a~~il~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (529)
+.||+|+|.+||++|..||++||+.|++|++ .|+.+ .++|.|+.++ .++|+|||
T Consensus 474 e~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~f~f 529 (529)
T 3tpo_A 474 EALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT--SEGFAFQVQD--GAPGTFNF 529 (529)
T ss_dssp TGGGGCSSHHHHHHHHHHHHHHC-------------------------------------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCC--CcccccCCCC--CCCCCCCC
Confidence 9999999999999999999999998766555 45544 3479998665 36789999
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.2e-65 Score=526.92 Aligned_cols=488 Identities=44% Similarity=0.754 Sum_probs=393.7
Q ss_pred HHHHHHHHHHhhHHHHHhhhhhcccCCCCc-cchhhhhhhhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhh
Q 009665 30 EDNMVEIRKNKREESLLKKRREGLQAHQPL-TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN 108 (529)
Q Consensus 30 ~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~ 108 (529)
....++.|+.+++......++....++... ..........-..++.+++.++|+|++.|+.|+..+|+++|.++++|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~ 94 (510)
T 3ul1_B 15 GSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID 94 (510)
T ss_dssp --------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHH
T ss_pred CcccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHH
Confidence 334556676666666666665443322211 1011111111136899999999999999999999999999999899999
Q ss_pred HHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009665 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (529)
Q Consensus 109 ~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 188 (529)
.+++.|++|.|+++|++.+++.+|.+|+|+|+||+.++++.+..+++.|++|.|+.+|.+++.+++++|+|+|+||+.++
T Consensus 95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999987666899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhcCChHHHHHHhccch----hHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHH
Q 009665 189 PKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACW 263 (529)
Q Consensus 189 ~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~ 263 (529)
+.+|+.+.+.|++++++.++.... ...+.+.++|++++++.+. +........+++|.|+.++.+++++++..++|
T Consensus 175 ~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~ 254 (510)
T 3ul1_B 175 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 254 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999995322 3467889999999999987 55666677899999999999999999999999
Q ss_pred HHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHH
Q 009665 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343 (529)
Q Consensus 264 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 343 (529)
+|++|+....+....+.+.|+++.|+.+|.+++..++..++++|+|++.+++..+..+++.|+++.|..+|.++ +..++
T Consensus 255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~ 333 (510)
T 3ul1_B 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQ 333 (510)
T ss_dssp HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHH
T ss_pred HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHH
Confidence 99999999888888899999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009665 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 423 (529)
Q Consensus 344 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 423 (529)
+.|+|+|+|++.++++++..+++.|++|.|+.++.+++++++++|+|+|+|++.+++.+++.+|++.|+++.|+++|+++
T Consensus 334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~ 413 (510)
T 3ul1_B 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCCC--
Q 009665 424 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP-- 501 (529)
Q Consensus 424 ~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~~~-- 501 (529)
|++++..++++|.+|+..+++.. ..+.|..+|+++||+++|+.||+|+|++||++|..||++||+.|++|++
T Consensus 414 d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~ 487 (510)
T 3ul1_B 414 DTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNV 487 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---------
T ss_pred CHHHHHHHHHHHHHHHHHhHhcc------chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccccc
Confidence 99999999999999999887543 3577899999999999999999999999999999999999998776655
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCcC
Q 009665 502 LPPGDATQAGFGFAGNGLPVPSGGFNF 528 (529)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (529)
.|+.+ .++|.|+.++ .++|+|||
T Consensus 488 ~~~~~--~~~~~~~~~~--~~~~~~~~ 510 (510)
T 3ul1_B 488 VPETT--SEGFAFQVQD--GAPGTFNF 510 (510)
T ss_dssp ---------------------------
T ss_pred CCCCC--ccccccCCCC--CCCCCCCC
Confidence 45443 3479998765 36789999
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1e-64 Score=525.11 Aligned_cols=500 Identities=84% Similarity=1.293 Sum_probs=403.0
Q ss_pred CCCCCCCccHHHhhhccCCCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCCCcc-chhhhhhhhhccHHHHHHh
Q 009665 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT-NSAALDNKKLESLPAMVAG 79 (529)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~ 79 (529)
|++++++++++|++.||++++++|+|+||+++.++|||+||++++.|||+.....+..++ ............+|.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~ 82 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGG 82 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC----------------------CHHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHH
Confidence 788888899999999999999999999999999999999999999999987432221110 0011111234579999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009665 80 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (529)
Q Consensus 80 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (529)
|.++++.++..|++.|+++++....++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|++
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 99999999999999999999877557888999999999999999987658999999999999999889999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhh
Q 009665 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (529)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 239 (529)
+.|+.+|.+++..+++.|+|+|++|+.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+.......
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 99999999999999999999999999998889999999999999999997677899999999999999998777777778
Q ss_pred hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHH
Q 009665 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (529)
Q Consensus 240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 319 (529)
.+++|.|+.++.++++.++..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|++++.+++...+
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999998888888899999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 320 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
.+++.|+++.|+.+|.++.++.+++.|+|+|+|++.++++.+..+++.|++|.|+.+|.+++++++..|+|+|+|++..+
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999987657899999999999999988999999999999999999999999999999999999999987
Q ss_pred CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCH
Q 009665 400 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479 (529)
Q Consensus 400 ~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~ 479 (529)
+++...++++.|+++.|+.+|..++++++..++++|.+++..++....... ...++|...+++.||+++|..|++|+++
T Consensus 403 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~L~~~~~~ 481 (528)
T 4b8j_A 403 SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA-GDVNVFSQMIDEAEGLEKIENLQSHDNN 481 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHCCcHHHHHHHHcCCCH
Confidence 889999999999999999999999999999999999999988876432111 1356799999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCC
Q 009665 480 EIYEKAVKILETYWVEEDEDEP 501 (529)
Q Consensus 480 ~v~~~a~~il~~~~~~~~~~~~ 501 (529)
+++++|..++++||+.|++++.
T Consensus 482 ~v~~~a~~il~~~~~~e~~~~~ 503 (528)
T 4b8j_A 482 EIYEKAVKILEAYWMDEEDDTM 503 (528)
T ss_dssp HHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHCCCcccccc
Confidence 9999999999999998776543
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.5e-59 Score=486.26 Aligned_cols=492 Identities=54% Similarity=0.827 Sum_probs=424.6
Q ss_pred CCCccHHHhhhccC-C-CCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhccc---CCC-Cccc-----hhhhhhhhhccH
Q 009665 5 PNARTEVRRSKYKV-A-VDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQ---AHQ-PLTN-----SAALDNKKLESL 73 (529)
Q Consensus 5 ~~~~~~~~~~~~k~-~-~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~---~~~-~~~~-----~~~~~~~~~~~l 73 (529)
...+++.|++.||+ + +|++|+||||++..+++||+||++++.|||+.... .+. ++.. .........+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 89 (530)
T 1wa5_B 10 SKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQEL 89 (530)
T ss_dssp --CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCH
T ss_pred CCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHH
Confidence 33467889999999 8 89999999999999999999999999999987542 111 1100 000000123579
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009665 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (529)
Q Consensus 74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 153 (529)
+.++..|+++++..+..|+..|+++++....++...++..|++|.|+.+|.+++++.++..|+|+|++++.++++.+..+
T Consensus 90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~ 169 (530)
T 1wa5_B 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV 169 (530)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999876567778889999999999999997339999999999999999888999999
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-C
Q 009665 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P 232 (529)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~ 232 (529)
++.|+++.|+.+|.+++..+++.|+|+|++++.+.+..+..+...|+++.|+.++ .+.+..++..++|+|++|+.+. +
T Consensus 170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999888999999999999999999 5578899999999999999987 6
Q ss_pred CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009665 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (529)
Q Consensus 233 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~ 312 (529)
........+++|.|+.++.++++.++..++|+|++++...+.....+++.|+++.|+.+|.++++.++..|+++|++++.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 66677778999999999999999999999999999998887777888899999999999999999999999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 009665 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (529)
Q Consensus 313 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL 392 (529)
+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++.++.+++.++++.|+.+|.+++++++..|+|+|
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 407 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9888888889999999999999998 899999999999999998899999999999999999999999999999999999
Q ss_pred HHHhcCCCH--HHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHH
Q 009665 393 SNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI 470 (529)
Q Consensus 393 ~nl~~~~~~--~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l 470 (529)
++++..+++ +...++++.|+++.|+.++.+.++.++..++++|.+++..++..... .....++|+..|.+.||+++|
T Consensus 408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~L 486 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGMEKI 486 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCHHHHHHHHTTHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc-ccccccHHHHHHHHcCcHHHH
Confidence 999987766 78899999999999999999999999999999999999887653210 001246789999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhCCCCCCC
Q 009665 471 ENLQSHDNTEIYEKAVKILETYWVEEDED 499 (529)
Q Consensus 471 ~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 499 (529)
..|++|++++|+++|..+|++||..+++|
T Consensus 487 ~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 487 FNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999999987664
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.7e-47 Score=386.91 Aligned_cols=426 Identities=61% Similarity=0.955 Sum_probs=385.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhc-CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~-g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
.++.+++.|+++++.++..|+..|+++++...+++.+.++.. |++|.|+++|.+++++.++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 378999999999999999999999999875445667778887 9999999999998339999999999999999888888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
..+++.|++|.|+.+|.++++.+++.|+|+|++++.+.+..+..+.+.|+++.++.++..+.+..++..++|+|.+++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999998888999999999999999995457899999999999999987
Q ss_pred C-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665 231 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (529)
Q Consensus 231 ~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~ 309 (529)
. +........+++|.|+.++.++++.++..++|+|.+++....+....+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 555555668999999999999999999999999999998877777888889999999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHH
Q 009665 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 389 (529)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 389 (529)
++.+.+...+.+++.|+++.|+.+|.++ ++.+|..|+|+|+|++.++++..+.+++.++++.|+.++.++++++|..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9999888888888999999999999998 899999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHH
Q 009665 390 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 469 (529)
Q Consensus 390 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 469 (529)
|+|++++..++++...++++.|+++.|+.++++++++++..++++|.+++..++.....+ ....++|...|.+.||+++
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~ 418 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN-GTGINPYCALIEEAYGLDK 418 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS-CSCCCHHHHHHHHHHCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc-ccchhHHHHHHHHcCcHHH
Confidence 999999987778888989999999999999999999999999999999998776542210 1134679999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhCCCCCCC
Q 009665 470 IENLQSHDNTEIYEKAVKILETYWVEEDED 499 (529)
Q Consensus 470 l~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 499 (529)
|..|++|++.++++.|..+|++||+.|+++
T Consensus 419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 419 IEFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 999999999999999999999999877654
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=326.73 Aligned_cols=367 Identities=19% Similarity=0.198 Sum_probs=295.5
Q ss_pred hhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChh-hHHhhcCChHHHHHhhcCCCC-----------hHHHHHH
Q 009665 68 KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDF-----------PQLQFEA 135 (529)
Q Consensus 68 ~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~-~~~i~~g~i~~Li~lL~~~~~-----------~~v~~~a 135 (529)
.+++.++.++..+.+.|+.. .++++++.+.+++. ..+++.|++|.|+++|+..+. ++++.+|
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 45677899999999888873 34444444344454 778999999999999997432 6999999
Q ss_pred HHHHHHHhcCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchh
Q 009665 136 AWALTNIASGTSENTRVVIDHGAV----------PIFVRLLSSPT--DD-----VRE-------QAVWALGNVAGDSPKC 191 (529)
Q Consensus 136 ~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~ 191 (529)
+|+|+||+.+.++......+.|++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +++
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~ 181 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH 181 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence 999999999999999998888888 67777777642 22 555 999999999876 779
Q ss_pred HHHHHhcCChHHHHHHhcc----------chhHHHHHHHHHHHhhhhcCCCCCchhh--hhchHHHHHHhhccCChHHHH
Q 009665 192 RDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLT 259 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~~ 259 (529)
|+.+.+.|++++|+.+|.. ..++.+++.++|+|.||+.+.+...... ..+++|.|+.+|.+++++++.
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 9999999999999999942 2467899999999999999864233222 457799999999999999999
Q ss_pred HHHHHHHHhccC-CchhHHHHHHhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHHhcc
Q 009665 260 DACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQ 336 (529)
Q Consensus 260 ~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~ 336 (529)
.++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.++.++..|+.+|+|++.+++.....+. ..|+++.|+.+|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999985 456667888999999999975 557788999999999999985655555555 78999999999987
Q ss_pred CCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009665 337 NYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ 410 (529)
Q Consensus 337 ~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 410 (529)
..+. .+++.|+|+|.|++. +++++++.+++.|+++.|+.+|.+++..++++|+|+|.|++.. ++++...+++.
T Consensus 342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~ 420 (458)
T 3nmz_A 342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDM 420 (458)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence 7222 499999999999997 7799999999999999999999999999999999999999975 67889999999
Q ss_pred CChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 411 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 411 ~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
|+++.|+++|.++++.++..++++|.+|+...
T Consensus 421 G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 421 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp THHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999998654
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1e-39 Score=340.90 Aligned_cols=364 Identities=16% Similarity=0.151 Sum_probs=316.5
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCChhhHHh-hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665 72 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (529)
Q Consensus 72 ~l~~l~~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~~i-~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 148 (529)
.++.+++.|.++ +++++..|++.|..+... .+....++ +.|++|.|+.+|++++ +.+++.|+|+|+||+.++++
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence 367788888887 899999999999998542 23344444 6899999999999988 89999999999999985421
Q ss_pred -----------------------------h---HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009665 149 -----------------------------N---TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (529)
Q Consensus 149 -----------------------------~---~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (529)
. .+.+++.|++|.|+.++.++++.++++|+|+|+||+.+ +.+|..+.
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv 533 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVV 533 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 1 26788999999999999999999999999999999976 45899999
Q ss_pred hcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCch--hhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCC
Q 009665 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF--EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGT 272 (529)
Q Consensus 197 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~ 272 (529)
+.|++++|+.+| .+.+...++.|+|+|++|+... +...+ ....+++|.|+.+|.++ +...+..++|+|.||+..+
T Consensus 534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999 6667788999999999999764 22111 12356899999999865 3345678999999999998
Q ss_pred chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
++....+++.|+++.|+.+|.++++.++..|+++|+|++.+.+.... +++ .|.++.|+.++.++ +..++++|+|+|+
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa 690 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDE-DEETATACAGALA 690 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 77788899999999999999999999999999999999997665444 444 78999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHH-cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC---CHHH
Q 009665 352 NITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP---DPRI 427 (529)
Q Consensus 352 nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~---~~~v 427 (529)
|++.+++.+++.+++ .|+++.|+.++.+++.+++..|+|+|.|++.+ ++++..++++.|+++.|+.+++.. ++++
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i 769 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHH
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHH
Confidence 999987999999998 89999999999999999999999999999985 578899999999999999999765 6899
Q ss_pred HHHHHHHHHHHHHhhh
Q 009665 428 VTVCLEGLENILKAGE 443 (529)
Q Consensus 428 ~~~~l~aL~~l~~~~~ 443 (529)
+..++++|.+++..+.
T Consensus 770 ~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 770 REVATQCLAAAERYRI 785 (810)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998875
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.4e-39 Score=324.09 Aligned_cols=365 Identities=18% Similarity=0.208 Sum_probs=309.3
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009665 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (529)
.+|.|+.+|.+++ ++++..|+++|.+++.+++..+..+++.|++|.|+.+|.++++.++..|+|+|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999998 999999999999999877788889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc--------c--------CChHHH
Q 009665 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------NDDEVL 258 (529)
Q Consensus 195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~d~~v~ 258 (529)
+.+.|++++|+.+|..+.++.++..++|+|+||+........... +++|.|+.++. + .++.+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995477899999999999999998433333444 99999999993 2 356778
Q ss_pred HHHHHHHHHhccCCchhHHHHHHh-CcHHHHHHhcCC------CCcchHHHHHHHHHHhhcC------------------
Q 009665 259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG------------------ 313 (529)
Q Consensus 259 ~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~al~~L~~l~~~------------------ 313 (529)
..++|+|++|+.. ++....+.+. |+++.|+.+|.+ .+..+...|+.+|.+++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677778887 999999999975 4567888899999998631
Q ss_pred --------------------------------ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH--
Q 009665 314 --------------------------------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-- 359 (529)
Q Consensus 314 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 359 (529)
.+...+.+++.++++.++.+|.++.++.+++.|+|+|+|+++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1123334556778899999998775789999999999999986433
Q ss_pred -HH-HHHH-HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCH------HHHHH
Q 009665 360 -QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP------RIVTV 430 (529)
Q Consensus 360 -~~-~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~------~v~~~ 430 (529)
.+ +.++ +.|++|.|+++|.+++.+++++|+|+|.|++.+ .....++..++++.|+++|...++ +++..
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 22 4445 689999999999999999999999999999984 234556677899999999998653 68889
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCC-CHHHHHHHHHHHHhhCCCCC
Q 009665 431 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWVEED 497 (529)
Q Consensus 431 ~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~ 497 (529)
++++|.+++..+. .+...+.+.||++.|.+|+.|+ ++++|+.|.++|.+||...+
T Consensus 397 ~l~~l~ni~~~~~------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQP------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCT------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCH------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 9999999986543 2578888999999999999999 99999999999999997543
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.8e-38 Score=325.76 Aligned_cols=370 Identities=26% Similarity=0.408 Sum_probs=327.2
Q ss_pred hhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009665 69 KLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (529)
Q Consensus 69 ~~~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~ 147 (529)
+.|.+|.|++.|. ++++.+|..|+++|.++++.. ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.+++
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~ 194 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGS 194 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCH
Confidence 4478999999997 566899999999999998764 455678899999999999999999 9999999999999999889
Q ss_pred hhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHH
Q 009665 148 ENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (529)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 222 (529)
+.+..+++.|+++.|+.+|..++ ..+...++|++++++.............++++.|+.++ .+.++.++..++|
T Consensus 195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~ 273 (529)
T 3tpo_A 195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCW 273 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHH
Confidence 99999999999999999998643 46788999999999977654445555567899999999 7788999999999
Q ss_pred HHhhhhcCCCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHH
Q 009665 223 TLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301 (529)
Q Consensus 223 ~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~ 301 (529)
+|++++.+.+. .......+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++.
T Consensus 274 aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~ 353 (529)
T 3tpo_A 274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 353 (529)
T ss_dssp HHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHH
T ss_pred HHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHH
Confidence 99999987632 23344578999999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcC
Q 009665 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA 380 (529)
Q Consensus 302 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~ 380 (529)
.|+++|+|++.++..+...+++.|+++.|+.+|.++ +.+++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.
T Consensus 354 ~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~ 432 (529)
T 3tpo_A 354 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 432 (529)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC
Confidence 999999999999999999999999999999999998 99999999999999997 5788899999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcC----CC-HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 381 EFEIKKEAAWAISNATSG----GS-NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 381 ~~~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
|++++..++++|.|+... +. ......+.+.|+++.|..|..+++.+|...+...|.+++...
T Consensus 433 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 433 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 999999999999999742 22 334456678899999999999999999999999999887543
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.2e-38 Score=323.42 Aligned_cols=370 Identities=26% Similarity=0.407 Sum_probs=326.8
Q ss_pred hhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009665 69 KLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (529)
Q Consensus 69 ~~~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~ 147 (529)
+-|.+|.|++.|+ ++++.+|..|+++|.++++.. ....+.+++.|++|.|+.+|.+++ ++++..|+|+|+||+.+++
T Consensus 98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~ 175 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGS 175 (510)
T ss_dssp HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCH
Confidence 3478999999997 556899999999999998764 566778899999999999999998 9999999999999999889
Q ss_pred hhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHH
Q 009665 148 ENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (529)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 222 (529)
+.+..+++.|+++.|+.++.+++ ..+...++|++++++.............++++.|+.++ .+.++.++..++|
T Consensus 176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~ 254 (510)
T 3ul1_B 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCW 254 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHH
Confidence 99999999999999999998743 46788999999999976654445555567899999999 7788899999999
Q ss_pred HHhhhhcCCCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHH
Q 009665 223 TLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301 (529)
Q Consensus 223 ~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~ 301 (529)
+|++|+...+. .......+++|.|+.++.+.+..++..++++|++++..++.....+++.|+++.|+.+|.++++.++.
T Consensus 255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~ 334 (510)
T 3ul1_B 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 334 (510)
T ss_dssp HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHH
T ss_pred HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHH
Confidence 99999987632 23334578999999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcC
Q 009665 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA 380 (529)
Q Consensus 302 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~ 380 (529)
.|+++|+|++.++..+...+++.|+++.|+.++.++ +.+++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.
T Consensus 335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~ 413 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 999999999999999999999999999999999998 99999999999999998 5788899999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcCC-----CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 381 EFEIKKEAAWAISNATSGG-----SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 381 ~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
+++++..++++|.|++..+ .......+.+.|+++.|..|..+++.++...+...|.+++...
T Consensus 414 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 414 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999999997521 2334556678899999999999999999999999999887543
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=3.2e-37 Score=319.43 Aligned_cols=404 Identities=19% Similarity=0.216 Sum_probs=341.9
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (529)
Q Consensus 69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 148 (529)
+.+.+|.+++.|+++++.++..|+.+|.++.... ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHH
Confidence 3478999999999999999999999999998754 445667778999999999999988 99999999999999998899
Q ss_pred hHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665 149 NTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (529)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 227 (529)
.+..+.+.|+++.|+.++.+. ....+..++.+|.+++.. +..+..+.+.|+++.++.++ .+.++.++..++|+|.++
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHH
Confidence 999999999999999999874 566778889999999965 45788899999999999999 566889999999999999
Q ss_pred hcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHH
Q 009665 228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALR 305 (529)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~ 305 (529)
+...+.. ....+++|.|++++.+++++++..++|+|++++....+....+.+.|+++.|+.+|.+ .++.++..|++
T Consensus 255 ~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 255 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp HTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 9886332 2346899999999999999999999999999999877788889999999999999975 34789999999
Q ss_pred HHHHhhcCChh---hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCCh
Q 009665 306 TVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (529)
Q Consensus 306 ~L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~ 382 (529)
+|+|++.+++. ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.++. ....+++.|++|.|+.++.++++
T Consensus 333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~ 411 (529)
T 1jdh_A 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQ 411 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhH
Confidence 99999886543 355678899999999999988346999999999999999744 45788899999999999998888
Q ss_pred hHHHHHHHHHHH--HhcCC------------------CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 383 EIKKEAAWAISN--ATSGG------------------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 383 ~v~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
++|++|+|+++| +..++ +++....+.+.|+++.|+.++.++++.++..+.++|.++....
T Consensus 412 ~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~ 491 (529)
T 1jdh_A 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491 (529)
T ss_dssp HHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH
Confidence 999988887777 22221 3455567889999999999999999999999999999986331
Q ss_pred hhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009665 443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 492 (529)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 492 (529)
++...+.+.|+++.|..|+.|++++|+..|.++|.++
T Consensus 492 -------------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 -------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp -------------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2578889999999999999999999999999999865
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-37 Score=325.38 Aligned_cols=405 Identities=17% Similarity=0.131 Sum_probs=335.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCC-CChhhHHhh---cCChHHHHHhhcCC--CChHHHHHHHHHHHHHhcCC
Q 009665 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQ---SGVVPRFIEFLSRD--DFPQLQFEAAWALTNIASGT 146 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~-~~~~~~~i~---~g~i~~Li~lL~~~--~~~~v~~~a~~~L~~l~~~~ 146 (529)
+|.|+..+++++..++..|+.+|+++.+... ++....+-+ ..+++.|+++|.++ + ++++..|+|+|.+++. .
T Consensus 332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~ 409 (810)
T 3now_A 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-D 409 (810)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-S
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-C
Confidence 5888888888888889999999999875432 222222222 13477889999887 5 8999999999999999 5
Q ss_pred hhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-----------------------------hhH---H
Q 009665 147 SENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-----------------------------KCR---D 193 (529)
Q Consensus 147 ~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-----------------------------~~~---~ 193 (529)
++.+..++ +.|++|.|+.+|.+++..++..|+|+|+||+.+.+ ..+ +
T Consensus 410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~ 489 (810)
T 3now_A 410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT 489 (810)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence 66666665 57999999999999999999999999999997542 122 5
Q ss_pred HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009665 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (529)
Q Consensus 194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~ 273 (529)
.+++.|+++.|+.++ .++++.++..++|+|.|++...+........|++|.|+.+|.++++.++..++|+|++++...+
T Consensus 490 ~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 490 VLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence 778999999999999 7788999999999999999765544555568999999999999999999999999999986533
Q ss_pred hhHHH--HHHhCcHHHHHHhcCCCCc-chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665 274 DKIQA--VIEAGVCPRLVELLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (529)
Q Consensus 274 ~~~~~--~~~~~~~~~L~~lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 350 (529)
..... ....++++.|+.+|.++.. ..+..|+++|+|++.+++.....+++.|+++.|..+|.++ ++.+++.|+|+|
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L 647 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL 647 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 22110 0113689999999986544 3356899999999999888888899999999999999998 899999999999
Q ss_pred HHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHhccCCCCHHHH
Q 009665 351 SNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPRIV 428 (529)
Q Consensus 351 ~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~v~ 428 (529)
+|++.+ ++....+++ .|.++.|+.++.+++..++++|+|+|+|++.+ ++..++.+++ .|+++.|+.+|.+++.+++
T Consensus 648 ~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq 725 (810)
T 3now_A 648 CNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQ 725 (810)
T ss_dssp HHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred HHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence 999997 555566664 68999999999999999999999999999985 5678888888 8999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC---CCHHHHHHHHHHHHhhCCC
Q 009665 429 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH---DNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 429 ~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~---~~~~v~~~a~~il~~~~~~ 495 (529)
..++++|.|+...+.. ....+.+.|+++.|..|... .+.++++.|...|+.....
T Consensus 726 ~~A~~aL~NL~~~s~e------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 726 HRGIVIILNMINAGEE------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHHHHHHTTCHH------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHH------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 9999999999874321 37788899999999999644 4799999999999887653
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.7e-37 Score=322.26 Aligned_cols=406 Identities=19% Similarity=0.234 Sum_probs=346.1
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 70 ~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
.+.++.+++.|+++++.++..|+.+|.++++.. ......+++.|++|.|+++|.+++ +.++..++.+|.+++.++++.
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHH
Confidence 478999999999999999999999999998764 455667778999999999999988 889999999999999888999
Q ss_pred HHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665 150 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
+..+.+.|+++.|+.++.+. ...++..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+++
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999884 477889999999999964 45789999999999999999 5668899999999999999
Q ss_pred cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC--CcchHHHHHHH
Q 009665 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT 306 (529)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~al~~ 306 (529)
...+.. ....+++|.|+.++.+.+++++..++|+|++|+.........+++.|+++.|+.+|.+. .+.++..|+++
T Consensus 253 ~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 253 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp GGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 876332 33468999999999999999999999999999998777778899999999999999763 36899999999
Q ss_pred HHHhhcCChh---hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009665 307 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (529)
Q Consensus 307 L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 383 (529)
|++++..... ....+++.++++.|+.+|.++.++.+++.|+|+|+|++.+... ...+++.|+++.|+.++.+++++
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~ 409 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQD 409 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchh
Confidence 9999975432 2334778899999999999874479999999999999997444 47888999999999999886555
Q ss_pred HHH----------------------HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665 384 IKK----------------------EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 384 v~~----------------------~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
+|+ .++.+|.+++. ++.....+.+.|+++.|+.+|.+.++.++..++++|.++...
T Consensus 410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp HTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 554 45555555554 335556788999999999999999999999999999998743
Q ss_pred hhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHH------------------HHH--HHHHHHhhCCCCC
Q 009665 442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI------------------YEK--AVKILETYWVEED 497 (529)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v------------------~~~--a~~il~~~~~~~~ 497 (529)
. .++..|.+.|+++.|..++.+++++| |.. +..++..||..+.
T Consensus 488 ~-------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 488 K-------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp H-------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred H-------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 2 25788999999999999999999999 444 6778899997663
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=3.3e-37 Score=311.12 Aligned_cols=362 Identities=16% Similarity=0.187 Sum_probs=303.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+|.++..|+++++.+|..|+.+|++++... .+....+++.|++|.|+++|.+++ +.++..|+|+|.||+.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999987532 333558889999999999999988 99999999999999997799999
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------c-------hhHH
Q 009665 152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLS 215 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~ 215 (529)
.+++.|++|.|+++|. +++.++++.++|+|+||+.+ +..+..+.+ |++++|+.++.. . .++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 78999999999999999988 568888888 999999999931 1 2567
Q ss_pred HHHHHHHHHhhhhcCCCCCchhhh-h-chHHHHHHhhcc------CChHHHHHHHHHHHHhccCC---------------
Q 009665 216 MLRNATWTLSNFCRGKPQPLFEQT-R-PALPALERLIHS------NDDEVLTDACWALSYLSDGT--------------- 272 (529)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~-~-~~l~~L~~ll~~------~d~~v~~~a~~~L~~l~~~~--------------- 272 (529)
+++.++|+|+||+.. +....... . +++|.|+.++.+ .+..+...++++|.+++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999987 33222222 3 899999999985 46678889999999886310
Q ss_pred -----------------------------------chhHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHHhhcCChh
Q 009665 273 -----------------------------------NDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM 316 (529)
Q Consensus 273 -----------------------------------~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~ 316 (529)
+...+.+++.|+++.++.+|.+ .++.++..|+++|+|++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 1122345566788999999965 4678999999999999987654
Q ss_pred hH----HHHH-hcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCCh------hHH
Q 009665 317 QT----QCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF------EIK 385 (529)
Q Consensus 317 ~~----~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~------~v~ 385 (529)
.. +.++ +.|++|.|+.+|.++ +.+++++|+|+|+|++.+ + ..+.++..++++.|+++|..+++ ++.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 32 3344 689999999999999 999999999999999986 3 34566777899999999998743 688
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhh
Q 009665 386 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~ 442 (529)
..++++|.|+..+. ++....+.+.|+++.|++++.++ +.+++..+.++|.+++...
T Consensus 395 ~~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 395 SSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 89999999999764 57888888999999999999999 8999999999999887543
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3e-36 Score=305.61 Aligned_cols=367 Identities=25% Similarity=0.340 Sum_probs=323.7
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 71 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
+.++.+++.|+++ ++.++..|+++|.++.+.. ......+++.|++|.|+++|.+++ +.++..|+++|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 5789999999988 8999999999999998753 345566778999999999999988 999999999999999988889
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 227 (529)
+..+++.|+++.|+.++.+ .+..++..++|+|++++... +..+... ..++++.|+.++ .+.++.++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 78999999999999999765 3322222 368899999999 667889999999999999
Q ss_pred hcCCC-CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHH
Q 009665 228 CRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (529)
Q Consensus 228 ~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~ 306 (529)
+...+ ........+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 98752 22233446899999999999999999999999999999887777778888999999999999999999999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHH
Q 009665 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (529)
Q Consensus 307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~ 385 (529)
|++++.+++...+.+++.++++.|+.+|.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999998 899999999999999984 68888889999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 386 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 386 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
..|+++|.+++..+.. .....+.+.|+++.|..++.+++.+++..++.+|.+++...
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999975432 23567778899999999999999999999999999998543
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.2e-35 Score=307.26 Aligned_cols=369 Identities=25% Similarity=0.353 Sum_probs=326.7
Q ss_pred hccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665 70 LESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (529)
Q Consensus 70 ~~~l~~l~~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 148 (529)
.+.+|.+++.|.++ ++.++..|+++|.++++.. ......++..|++|.|+.+|.+++ +.++..|+|+|++++..+++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~ 206 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTD 206 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCcc
Confidence 46899999999987 8999999999999998653 345667788999999999999888 99999999999999998888
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
.+..++..|+++.|+.++.+.+..++..++|+|++++.............++++.|+.++ .+.++.++..++|+|.+|+
T Consensus 207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999976522234555678999999999 6678899999999999999
Q ss_pred cCCCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009665 229 RGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (529)
Q Consensus 229 ~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L 307 (529)
...+. .......+++|.|+.++.+.++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87532 22233358999999999999999999999999999988877778888999999999999999999999999999
Q ss_pred HHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CH--HHHHHHHHcCCHHHHHHHHhcCChhH
Q 009665 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NV--NQIQAIIEAGIIGPLVNLLLNAEFEI 384 (529)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~l~~L~~~l~~~~~~v 384 (529)
++++.+++...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++.+ ++ +....+++.|+++.|+.++.++++.+
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 444 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 999998888888888999999999999988 899999999999999984 45 78888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 385 KKEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 385 ~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
+..|+++|.+++..+.. .....+.+.|+++.|..++.+++++++..+.++|.+++...
T Consensus 445 ~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 445 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 99999999999875322 24567888999999999999999999999999999888654
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.1e-35 Score=304.13 Aligned_cols=365 Identities=25% Similarity=0.360 Sum_probs=324.1
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchh
Q 009665 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKC 191 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~ 191 (529)
..+|.|+..|.+++ ++++..|+++|.+++.... .....++..|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus 74 ~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 74 ESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp -CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 46899999999988 9999999999999977554 67788899999999999999876 999999999999999988888
Q ss_pred HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC-CchhhhhchHHHHHHhh-ccCChHHHHHHHHHHHHhc
Q 009665 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLS 269 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~L~~l~ 269 (529)
+..+...|+++.|+.+| .+.++.++..++|+|.+++...+. .......++++.|+.++ .+.++.++..++|+|++|+
T Consensus 153 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 667899999999999999987532 33344568999999999 5778999999999999999
Q ss_pred cCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHH
Q 009665 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 349 (529)
...+.. ......++++.|+.+|.++++.++..|+++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 232 ~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~ 309 (528)
T 4b8j_A 232 RGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRT 309 (528)
T ss_dssp CSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred cCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHH
Confidence 875333 2334579999999999999999999999999999998888888889999999999999998 89999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHH
Q 009665 350 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 428 (529)
Q Consensus 350 L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~ 428 (529)
|+|++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.+|.+.++.++
T Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 388 (528)
T 4b8j_A 310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIK 388 (528)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 9999999899999999999999999999998 999999999999999985 67888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665 429 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 429 ~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
..++++|.++...+... ....+.+.|+++.|..+..+.++++...|...|.+++.
T Consensus 389 ~~a~~aL~nl~~~~~~~-----------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 389 KEAAWAISNATSGGSHD-----------QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHHHHSCHH-----------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHH-----------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999998764221 35566678999999999999999999999888777754
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.9e-36 Score=302.74 Aligned_cols=365 Identities=19% Similarity=0.208 Sum_probs=303.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcC-Chhh
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSEN 149 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~ 149 (529)
..+|.+++.|.++++.+|..|+.+|++++... .+....+++.|+||.|+++|.+++ ++++..|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 47999999999999999999999999987643 566778889999999999999998 99999999999999986 6899
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-----------------cc
Q 009665 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----------------EH 211 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~-----------------~~ 211 (529)
+..+++.|+||.|+.+|.+ .+.+++++++++|+||+.. +..+..+.. +++++|+.++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 6789999999999999985 456777775 57999999872 12
Q ss_pred hhHHHHHHHHHHHhhhhcCCCC-Cchh-hhhchHHHHHHhhcc------CChHHHHHHHHHHHHhccCCc----------
Q 009665 212 AKLSMLRNATWTLSNFCRGKPQ-PLFE-QTRPALPALERLIHS------NDDEVLTDACWALSYLSDGTN---------- 273 (529)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~-~~~~-~~~~~l~~L~~ll~~------~d~~v~~~a~~~L~~l~~~~~---------- 273 (529)
.++.++.+++|+|.||+...+. .... ...++++.|+.++++ .+...+++++|+|.||+....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 2578999999999999987633 2222 236778899999874 467899999999999986521
Q ss_pred ---------------hhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhh----HHHHHhcCChHHHHHH
Q 009665 274 ---------------DKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQ----TQCIINHQALPCLLDL 333 (529)
Q Consensus 274 ---------------~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~----~~~~~~~~~l~~L~~l 333 (529)
..++.+++.++++.++.+|. +.++.+++.|+++|.|++.+.... ...+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 11122334456788899995 467899999999999999876322 2234457889999999
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--------ChhHHHHHHHHHHHHhcCCCHHHHH
Q 009665 334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--------EFEIKKEAAWAISNATSGGSNEQIK 405 (529)
Q Consensus 334 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~ 405 (529)
|.++ +..+++.|+|+|+||+.+.. .+.++..+++|.|+.+|.++ ..+++..|+++|.|++.. ++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9998 89999999999999999743 23455788999999999886 357889999999999876 678999
Q ss_pred HHHHcCChHHHHhccCCC--CHHHHHHHHHHHHHHHHhhh
Q 009665 406 FLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 406 ~l~~~~~l~~L~~lL~~~--~~~v~~~~l~aL~~l~~~~~ 443 (529)
.+.+.|+++.|+.++.+. .+.++..+.++|.++....+
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 999999999999999986 78999999999999986543
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=4.9e-34 Score=306.02 Aligned_cols=394 Identities=19% Similarity=0.215 Sum_probs=336.0
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 70 ~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
.+.++.|++.|+++++.++..|+.+|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.
T Consensus 233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~ 310 (780)
T 2z6g_A 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 310 (780)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHH
Confidence 468999999999999999999999999998753 445566668999999999999987 899999999999999888999
Q ss_pred HHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665 150 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
+..+++.|+++.|+.++.+. ....+..++.+|.+++... ..+..+...|+++.|+.++ .+.+..+++.++|+|.+|+
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~ 388 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 388 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHh
Confidence 99999999999999999885 4567778999999999754 5688889999999999999 5667889999999999999
Q ss_pred cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CC-cchHHHHHHH
Q 009665 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPALRT 306 (529)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~-~~v~~~al~~ 306 (529)
...+. .....++++.|+.++.+.++.++..++++|++|+.........+++.|+++.|+.+|.+ .+ ..++..|+++
T Consensus 389 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a 466 (780)
T 2z6g_A 389 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 466 (780)
T ss_dssp TTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence 87633 22346899999999999999999999999999999887778889999999999999976 33 3899999999
Q ss_pred HHHhhcCChh---hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009665 307 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (529)
Q Consensus 307 L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 383 (529)
|++++..+.. ....+...++++.|+.+|.++..+.+++.|+|+|+|++.+ +.....+++.|+++.|+.+|.+++++
T Consensus 467 L~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchh
Confidence 9999875543 2346778899999999999883459999999999999987 55557888999999999999875544
Q ss_pred ----------------------HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665 384 ----------------------IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 384 ----------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
++..++.+|++++. ++.....+.+.|+++.|+.+|.+.++.++..++.+|.++...
T Consensus 546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 45566667777765 456667788999999999999999999999999999999733
Q ss_pred hhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHH
Q 009665 442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 485 (529)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a 485 (529)
. .++..|.+.|+++.|..|+.+++++|+..|
T Consensus 624 ~-------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A 654 (780)
T 2z6g_A 624 K-------------EAAEAIEAEGATAPLTELLHSRNEGVATYA 654 (780)
T ss_dssp H-------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred H-------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 2 258889999999999999999999996553
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.1e-35 Score=297.51 Aligned_cols=370 Identities=18% Similarity=0.217 Sum_probs=304.4
Q ss_pred HhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-C
Q 009665 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-S 188 (529)
Q Consensus 110 ~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~ 188 (529)
-...+.+|.|+.+|.+++ ++++..|+++|.+++.++++.+..+++.|+||.|+.+|.+++.++++.|+|+|.||+.. +
T Consensus 44 ~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred CcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence 346789999999999988 99999999999999998999999999999999999999999999999999999999985 6
Q ss_pred chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-----------------
Q 009665 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------- 251 (529)
Q Consensus 189 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------- 251 (529)
+..+..+.+.|++++|+.+|....+..+++.++++|++|+... ........+++|.|++++.
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence 7899999999999999999955567889999999999999864 3333444678999999872
Q ss_pred -cCChHHHHHHHHHHHHhccCCchhHHHHHHh-CcHHHHHHhcCC------CCcchHHHHHHHHHHhhcCChh-------
Q 009665 252 -SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM------- 316 (529)
Q Consensus 252 -~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~~------- 316 (529)
..++.++..+.++|.||+...++..+.+++. |+++.|+.++.+ .+...+..|+++|.|++.....
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 2367999999999999998876656667764 777899999864 4567889999999999875221
Q ss_pred ------------------hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HcCCHHHHH
Q 009665 317 ------------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---NQIQAII-EAGIIGPLV 374 (529)
Q Consensus 317 ------------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~l~~L~ 374 (529)
....+.+.++++.++.+|....++.+++.|+|+|.|++++.. ...+..+ +.+++|.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 111222334567788899654478999999999999998752 2233344 567899999
Q ss_pred HHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC--------CHHHHHHHHHHHHHHHHhhhhhh
Q 009665 375 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--------DPRIVTVCLEGLENILKAGEAEK 446 (529)
Q Consensus 375 ~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--------~~~v~~~~l~aL~~l~~~~~~~~ 446 (529)
.+|.+++..+++.|+|+|.|++.+.. ... .+..|+++.|+.+|... ..+++..++++|.+|+..+..
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-- 436 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-- 436 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH--
Confidence 99999999999999999999998653 222 34678999999999876 357888999999999865432
Q ss_pred hcCCCCccchHHHHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHhhCCCC
Q 009665 447 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVEE 496 (529)
Q Consensus 447 ~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~--~~~v~~~a~~il~~~~~~~ 496 (529)
....+.+.|+++.|..|..+. .+.+.+.|.++|.+++...
T Consensus 437 ----------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 437 ----------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp ----------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred ----------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 266777899999999998775 8999999999999988643
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=281.15 Aligned_cols=328 Identities=17% Similarity=0.191 Sum_probs=275.7
Q ss_pred hhhccHHHHHHhhcCC------------CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCCh----------HHHHHhhcC
Q 009665 68 KKLESLPAMVAGVWSD------------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVV----------PRFIEFLSR 125 (529)
Q Consensus 68 ~~~~~l~~l~~~L~s~------------~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i----------~~Li~lL~~ 125 (529)
.+-|.+|.|++.|+.. ++++++.|+++|.+++++. .+..+...+.|++ +.+++++.+
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 4458999999999963 3799999999999999876 4455566677777 677777776
Q ss_pred CC-ChH-----HHH-------HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHH
Q 009665 126 DD-FPQ-----LQF-------EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWAL 181 (529)
Q Consensus 126 ~~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L 181 (529)
.. +.+ ++. +|+|+|.|++. ++++|+.+++.|+++.|+.+|.. .+..++..|+|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL 224 (458)
T 3nmz_A 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL 224 (458)
T ss_dssp TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred hccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence 42 112 433 99999999987 69999999999999999999942 3477999999999
Q ss_pred HHhhCCCchhHHHHHh-cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhh-ccCChHH
Q 009665 182 GNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEV 257 (529)
Q Consensus 182 ~nl~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v 257 (529)
.||+.+++..+..+.. .|+++.|+.+| .+.+++++..++|+|.+|+... .........+++|.|+.+| .+.++.+
T Consensus 225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v 303 (458)
T 3nmz_A 225 TNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 303 (458)
T ss_dssp HHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHH
T ss_pred HHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHH
Confidence 9999887766666654 56699999999 6788999999999999999852 2223344579999999975 5678899
Q ss_pred HHHHHHHHHHhccCCchhHHHHH-HhCcHHHHHHhcCCCCcc----hHHHHHHHHHHhhc---CChhhHHHHHhcCChHH
Q 009665 258 LTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPS----VLIPALRTVGNIVT---GDDMQTQCIINHQALPC 329 (529)
Q Consensus 258 ~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~----v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~ 329 (529)
+..++.+|++|+...++....+. ..|+++.|+.+|.+.+.. ++..|+++|.|++. +++..++.+.+.|+++.
T Consensus 304 ~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~ 383 (458)
T 3nmz_A 304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 383 (458)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHH
Confidence 99999999999984444444455 789999999999887653 89999999999997 78888999999999999
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 330 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
|+.+|.++ +..++++|+|+|+|++.++++++..+++.|++|.|++++.+++..+++.|+|+|.|++.+.
T Consensus 384 Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 384 LLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999998 8899999999999999888999999999999999999999999999999999999999864
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.9e-33 Score=291.13 Aligned_cols=403 Identities=16% Similarity=0.135 Sum_probs=337.0
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 71 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
+.++.+++.|.+ +++.++..|+.+|+++... ..+...+++.|++|.|+++|.+++ +.++..|+++|.+++..++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 478999999975 5899999999999997643 346777889999999999999988 999999999999999977778
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
+..+.+.|++|.|+.++.+++.+++..++.+|.+++..++..+..+.+.|+++.++.++....+......++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888899999999999999999665566778888999999997
Q ss_pred CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (529)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~ 309 (529)
...........++++.|+.++.+.++.++..++|+|.+++....... ...++++.|+.++.++++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 65444444457899999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHHhcCC-hhH
Q 009665 310 IVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAE-FEI 384 (529)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~~l~~~~-~~v 384 (529)
++.+++.....+.+.|+++.|+.+|.+. .++.++..|+++|+|++.++++ ....+++.|+++.|+.+|.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 9998888888899999999999999763 1478999999999999986433 3557789999999999999875 599
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHH----------------------HHHhh
Q 009665 385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN----------------------ILKAG 442 (529)
Q Consensus 385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~----------------------l~~~~ 442 (529)
+..++|+|+|++.+. .....+.+.|+++.|+.++.+++++++..+.|++.+ +....
T Consensus 373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 999999999999853 444788899999999999988777777766665554 32211
Q ss_pred hhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665 443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
.....+.+.|+++.|..+..+++++++..|.+.+.++..
T Consensus 451 -------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 451 -------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp -------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred -------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 124567789999999999999999999999999988763
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=287.92 Aligned_cols=403 Identities=17% Similarity=0.153 Sum_probs=341.1
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 71 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
+.++.+++.|.++ ++.++..|+.+|+.+... ......+.+.|+++.|+++|.+++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 4689999999864 899999999999987543 346777889999999999999988 999999999999999977778
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
+..+++.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999987788899999999999999999666567788899999999997
Q ss_pred CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (529)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~ 309 (529)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.++.++++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6544444555789999999999999999999999999999764321 1122789999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCH--HHHH-HHHHcCCHHHHHHHHhcCC-hhH
Q 009665 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNV--NQIQ-AIIEAGIIGPLVNLLLNAE-FEI 384 (529)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~l~~L~~~l~~~~-~~v 384 (529)
++.+++.....+.+.|+++.|+.+|.+..+ +.++..|+++|+|++...+ +..+ .+++.++++.|+.+|.+++ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999888888889999999999999987423 7899999999999997433 2333 4778899999999999874 699
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 009665 385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG 442 (529)
Q Consensus 385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~----------------------~~v~~~~l~aL~~l~~~~ 442 (529)
++.|+|+|+|++.+. .....+.+.|+++.|+.+|...+ .+++..++.+|.++....
T Consensus 370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999853 34478889999999999987643 345667777777776443
Q ss_pred hhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665 443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
. ....+.+.|+++.|..+..+.+++++..|...|.++..
T Consensus 448 ~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 448 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp H-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H-------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 1 25667789999999999999999999999998887654
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=4.1e-32 Score=291.10 Aligned_cols=402 Identities=16% Similarity=0.156 Sum_probs=338.9
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 71 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
+.++.|++.|.+ .++.++..|+.+|.++... ..+...+.+.|+++.|+.+|.+++ +.++..|+++|.+++...+..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 468999999985 4899999999999996543 345667788999999999999998 999999999999999977788
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+..+...++++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888889999999999999999655556677788999999997
Q ss_pred CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (529)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~ 309 (529)
...........++++.|+.++.+.++.++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6544444455789999999999999999999999999999765321 1123689999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHHhcCCh-hH
Q 009665 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAEF-EI 384 (529)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~~l~~~~~-~v 384 (529)
++.+++.....+++.|+++.|+.+|.+..+ ..++..|+++|+||+..+++ ....+...++++.|+.+|.+++. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999888888889999999999999976423 48999999999999975433 23467789999999999998764 99
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 009665 385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG 442 (529)
Q Consensus 385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~----------------------~~v~~~~l~aL~~l~~~~ 442 (529)
++.|+|+|+|++.+ +.....+.+.|+++.|+.+|.+.+ .+++..++.+|.++....
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 99999999999974 455578889999999999987543 345667777788775321
Q ss_pred hhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009665 443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 493 (529)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 493 (529)
.....+.+.|+++.|..+..+.+++++..|...|.++.
T Consensus 584 -------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 584 -------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp -------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 12566778999999999999999999999988887764
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.7e-30 Score=247.88 Aligned_cols=273 Identities=19% Similarity=0.183 Sum_probs=237.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc----------chhHHHHHHHHHHHhhhhcCCCCCchhh
Q 009665 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (529)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (529)
+......+|+|+|+|++.+ +++|+.+.+.|++++|+.+|.. ..++.+++.++|+|.||+.+.+......
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556777999999999988 6789999999999999999942 2357899999999999998863233222
Q ss_pred --hhchHHHHHHhhccCChHHHHHHHHHHHHhccC-CchhHHHHHHhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhcCC
Q 009665 239 --TRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGD 314 (529)
Q Consensus 239 --~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~~~ 314 (529)
..+++|.|+.+|.+++++++..++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.++.++..|+.+|+|++..+
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 356799999999999999999999999999985 455667888999999999975 6678889999999999999966
Q ss_pred hhhHHHHH-hcCChHHHHHHhccCCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHH
Q 009665 315 DMQTQCII-NHQALPCLLDLLTQNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387 (529)
Q Consensus 315 ~~~~~~~~-~~~~l~~L~~lL~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~ 387 (529)
+.....+. ..|+++.|+.+|.++.+. .+++.|+|+|.|++. +++++++.+++.|+++.|+.+|.+++..++++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 65555565 789999999999876222 599999999999997 67899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009665 388 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 388 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~ 443 (529)
|+|+|.|++.. ++++...+.+.|+++.|+++|.++++.++..++++|.+|+...+
T Consensus 283 A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 283 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999865 67888999999999999999999999999999999999997644
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=4.6e-30 Score=247.27 Aligned_cols=269 Identities=19% Similarity=0.193 Sum_probs=234.1
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009665 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (529)
Q Consensus 129 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (529)
...+..|+|+|.+++. ++++++.+++.|+++.|+.+|.. .+..++..|+|+|.||+..++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567789999999999 58999999999999999999942 24789999999999999887767777654
Q ss_pred -cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhh-ccCChHHHHHHHHHHHHhccCCc
Q 009665 198 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN 273 (529)
Q Consensus 198 -~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~L~~l~~~~~ 273 (529)
.|+++.|+.+| .+.++.++..++|+|.||+... .........+++|.|+++| .+.+++++..++++|.+|+...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45699999999 6788999999999999999862 2233444579999999975 56789999999999999998554
Q ss_pred hhHHHHH-HhCcHHHHHHhcCCCCc----chHHHHHHHHHHhhc---CChhhHHHHHhcCChHHHHHHhccCCchhHHHH
Q 009665 274 DKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (529)
Q Consensus 274 ~~~~~~~-~~~~~~~L~~lL~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 345 (529)
+....+. ..|+++.|+.+|.++++ .++..|+++|.|++. +++..++.+.+.|+++.|+.+|.++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 4445555 68999999999987655 489999999999997 6888889999999999999999998 8999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 009665 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (529)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (529)
|+|+|+|++.+++++++.+++.|++|.|++++.+++..+++.|+++|.|++.+..
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999998889999999999999999999999999999999999999998754
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=6.5e-27 Score=217.49 Aligned_cols=240 Identities=28% Similarity=0.433 Sum_probs=222.5
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009665 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (529)
|.+|.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+++.|+.+|.+++..++..++++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57899999999998 99999999999999998888999999999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (529)
Q Consensus 194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~ 272 (529)
.+.+.|+++.++.++ .+.++.++..++|+|.+++... .........++++.|++++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6778999999999999999755 33333445789999999999999999999999999999988
Q ss_pred chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009665 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (529)
Q Consensus 273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 352 (529)
+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 77778899999999999999999999999999999999998888888899999999999999998 89999999999999
Q ss_pred HhcC
Q 009665 353 ITAG 356 (529)
Q Consensus 353 l~~~ 356 (529)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9974
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=5e-27 Score=218.34 Aligned_cols=240 Identities=35% Similarity=0.554 Sum_probs=220.4
Q ss_pred cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009665 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (529)
Q Consensus 113 ~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (529)
...++.++.+|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+++..+
T Consensus 11 ~~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 11 GSELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TCSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 346899999999998 8999999999988776677888889999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCC-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~ 271 (529)
..+.+.|+++.++.++ .+.++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++|+|++++..
T Consensus 90 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999 6678999999999999999886444 4455678999999999999999999999999999998
Q ss_pred CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
.+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|..++.++ ++.++..|+|+|+
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~ 247 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALE 247 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999999998888888899999999999999998 9999999999999
Q ss_pred HHhc
Q 009665 352 NITA 355 (529)
Q Consensus 352 nl~~ 355 (529)
|++.
T Consensus 248 ~l~~ 251 (252)
T 4db8_A 248 KLQS 251 (252)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 9974
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.3e-26 Score=213.81 Aligned_cols=241 Identities=28% Similarity=0.433 Sum_probs=222.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCc
Q 009665 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235 (529)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 235 (529)
|.++.|+.+|.+++++++..|+++|++++...+..+..+.+.|+++.++.++ .+.+..++..++|+|.+++... ....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5689999999999999999999999999988887889999999999999999 6677999999999999999875 3334
Q ss_pred hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009665 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (529)
Q Consensus 236 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 315 (529)
.....++++.++.++.+++++++..++++|++++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+++
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 44557899999999999999999999999999998777777889999999999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (529)
Q Consensus 316 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 395 (529)
.....+.+.|+++.|+.++.++ ++.++..|+|+|++++.+++.....+.+.|+++.|+.++.+++++++..|+++|.|+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 8888899999999999999988 899999999999999998899999999999999999999999999999999999999
Q ss_pred hcCC
Q 009665 396 TSGG 399 (529)
Q Consensus 396 ~~~~ 399 (529)
....
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8754
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=1.8e-26 Score=216.26 Aligned_cols=235 Identities=16% Similarity=0.151 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHH-hcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH
Q 009665 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (529)
Q Consensus 255 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 333 (529)
.+-+..++..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++..++.+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3567888999999998654 5566888999999999 9999999999999999999999999999999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q 009665 334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 413 (529)
Q Consensus 334 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l 413 (529)
|.++.+..+++.|+|+|+|++++++...+.+++.|+++.|+.+|.++++.++..|+|+|++++.+ +++.+..+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643789999999999999999899888999999999999999999999999999999999987 56888999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCC-CHHHHHHHHHHHHhh
Q 009665 414 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETY 492 (529)
Q Consensus 414 ~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~~ 492 (529)
+.|+.+|.++++.++..++++|.+|+...+....... ...+.+..++++. ++.++.++ +.++|++|..|+++|
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~~-----~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRHR-----CQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHHH-----HHHccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987543211100 0123467777653 67788676 799999999999999
Q ss_pred CCCCC
Q 009665 493 WVEED 497 (529)
Q Consensus 493 ~~~~~ 497 (529)
|+.++
T Consensus 286 f~~~~ 290 (296)
T 1xqr_A 286 FSSPA 290 (296)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 97643
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.9e-26 Score=214.36 Aligned_cols=239 Identities=36% Similarity=0.574 Sum_probs=217.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
..++.+++.|++++++++..|++.|+++++. ..+....+++.|++|.|+++|.+++ +.++..|+++|.+++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 3689999999999999999999999998876 3566788899999999999999998 9999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
..+++.|+++.|+.+|.++++.+++.|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.++.++..++|+|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988775448889999999999999 667899999999999999987
Q ss_pred CCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665 231 KPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (529)
Q Consensus 231 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~ 309 (529)
.+. .......+++|.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 522 2233447999999999999999999999999999998887888889999999999999999999999999999999
Q ss_pred hhc
Q 009665 310 IVT 312 (529)
Q Consensus 310 l~~ 312 (529)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.6e-23 Score=210.63 Aligned_cols=400 Identities=15% Similarity=0.128 Sum_probs=298.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
..+.+.+.+.+........++..+...++. +..++.++..+.++.|...+++ ..++..|+-+|..+.........
T Consensus 256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~ 330 (778)
T 3opb_A 256 LSKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCI 330 (778)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTC
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcC
Confidence 355666666544333344445555554554 3566778888899999999964 57899999999998873322111
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
.+. .+.+.+.++|.+++.+-+..|++.|+.++.+.. .|+.+.. .+++..|+.++....+..+...++.+|.|++..
T Consensus 331 si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 331 NLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp CHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred cHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence 111 245777888888776669999999999987755 5666554 456999999995456778999999999999986
Q ss_pred CCCCc---------------------------------------hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665 231 KPQPL---------------------------------------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 231 ~~~~~---------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~ 271 (529)
.+... .....|++|.|+.++.++++.++..++|+|.+|+..
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 53210 011268999999999999999999999999999976
Q ss_pred CchhHHHHHHhCcHHHHHHhcCCCCcc---hHHHHHHHHHHhhcCChhhHHHHHh----cCChHHHHHHhcc-CCch---
Q 009665 272 TNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCIIN----HQALPCLLDLLTQ-NYKK--- 340 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~---v~~~al~~L~~l~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~--- 340 (529)
. +....+++.|+++.|+.+|.+.... .+..|+++|+++....+... ++. .++++.|+.+|.. +...
T Consensus 488 ~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~ 564 (778)
T 3opb_A 488 K-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNP 564 (778)
T ss_dssp G-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred H-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccccc
Confidence 4 5567789999999999999887544 78999999999986443222 221 3889999999983 2111
Q ss_pred ---------hHHHHHHHHHHHHhcCC----HHHHHHHHHc-CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHH-H
Q 009665 341 ---------SIKKEACWTISNITAGN----VNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI-K 405 (529)
Q Consensus 341 ---------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~-~ 405 (529)
--+.+|+.+|.|++..+ .+....++.. |+++.|.++|.+++..+|++|+++++|++.. ++.+ .
T Consensus 565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~ 642 (778)
T 3opb_A 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAA 642 (778)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGG
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHH
Confidence 12779999999999974 2446778884 8999999999999999999999999999974 3332 2
Q ss_pred HHHHc------CChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC--C
Q 009665 406 FLVSQ------GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH--D 477 (529)
Q Consensus 406 ~l~~~------~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~--~ 477 (529)
.+... +.++.|+.+++.+|.+++.++.++|.++....+.. ...+++..+|++.+..+..+ +
T Consensus 643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-----------a~~ll~~~~gi~~Ll~lL~~~~~ 711 (778)
T 3opb_A 643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-----------AKELLTKKELIENAIQVFADQID 711 (778)
T ss_dssp GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-----------HHHHTTCHHHHHHHHHHHHHTTT
T ss_pred HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-----------HHHHHHccccHHHHHHHHhccCC
Confidence 22211 13778999999999999999999999996544322 14445555899999888766 8
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 009665 478 NTEIYEKAVKILETYWVE 495 (529)
Q Consensus 478 ~~~v~~~a~~il~~~~~~ 495 (529)
+++++.++..++.+++..
T Consensus 712 ~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 712 DIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999873
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.8e-23 Score=212.84 Aligned_cols=358 Identities=14% Similarity=0.110 Sum_probs=281.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.++.|...+++ ..++..|+..|.++.+...... ..+. .+.+.+.++|.+++ .+-+..|++.|..++. .++.+.
T Consensus 297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe 369 (778)
T 3opb_A 297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-INLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKI 369 (778)
T ss_dssp HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-CCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-CcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHH
Confidence 45666666654 5788899999999877543221 1111 26788899998877 6679999999999998 677777
Q ss_pred HHHh-CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch--------------------------------------h
Q 009665 152 VVID-HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK--------------------------------------C 191 (529)
Q Consensus 152 ~~~~-~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------~ 191 (529)
.+++ .|.++.|+.++.. .+..+...++.+|.|++.+.+. .
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~ 449 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN 449 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence 7775 4679999999985 7788999999999999863321 3
Q ss_pred HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChH---HHHHHHHHHHHh
Q 009665 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE---VLTDACWALSYL 268 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~---v~~~a~~~L~~l 268 (529)
+..+.+.|+++.|+.++ .+.++.++..++|+|.+|+............|+++.|+.++.+.... ++..|+++|.++
T Consensus 450 ~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 45678899999999999 77789999999999999998765555666689999999999877544 899999999999
Q ss_pred ccCCchhHHHHHH----hCcHHHHHHhcCC-CCcc-------------hHHHHHHHHHHhhcCCh----hhHHHHHhc-C
Q 009665 269 SDGTNDKIQAVIE----AGVCPRLVELLRH-PSPS-------------VLIPALRTVGNIVTGDD----MQTQCIINH-Q 325 (529)
Q Consensus 269 ~~~~~~~~~~~~~----~~~~~~L~~lL~~-~~~~-------------v~~~al~~L~~l~~~~~----~~~~~~~~~-~ 325 (529)
+...+... ++. .|+++.|+.+|.. +... -+..|+.+|+|++...+ ..+..++.. |
T Consensus 529 lis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 529 LIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 85443221 221 2899999999983 2211 16789999999999762 345667775 8
Q ss_pred ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHc------CCHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI-QAIIEA------GIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 326 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~------~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (529)
+++.|..+|.++ +..+|++|+|+++|++.. ++.+ +.+.+. +.++.|+.++..++.++|..|+|+|++++..
T Consensus 607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999988 889999999999999985 5543 233321 2378899999999999999999999999754
Q ss_pred CCHHHHHHHHHc-CChHHHHhccCC--CCHHHHHHHHHHHHHHHHhh
Q 009665 399 GSNEQIKFLVSQ-GCIKPLCDLLNC--PDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 399 ~~~~~~~~l~~~-~~l~~L~~lL~~--~~~~v~~~~l~aL~~l~~~~ 442 (529)
.+..+..+++. ++++.++.++.. ++.+++..++.++.|++.+.
T Consensus 685 -~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 685 -IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp -CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred -ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 45677778776 789999999998 89999999999999999754
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=4.5e-23 Score=185.85 Aligned_cols=198 Identities=38% Similarity=0.590 Sum_probs=185.6
Q ss_pred hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHH
Q 009665 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (529)
Q Consensus 240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 319 (529)
.+..+.|..++.+++++++..++|+|.+++...++....+++.|+++.|+.+|.++++.++..|+++|++++.+++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 57788999999999999999999999999988888888899999999999999999999999999999999998888888
Q ss_pred HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 320 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++....+++.|+++.|+.++.+++++++..|+++|.|++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 999999999999999999 999999999999999998899988999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665 400 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 400 ~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~ 439 (529)
+++....+.+.|+++.|+.++.+++++++..++++|.++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4677888899999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=1.5e-22 Score=182.46 Aligned_cols=199 Identities=33% Similarity=0.526 Sum_probs=181.1
Q ss_pred hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009665 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (529)
Q Consensus 112 ~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (529)
..|..+.|+.+|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4578999999999998 999999999999999888999999999999999999999999999999999999999888888
Q ss_pred HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCC-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009665 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~ 270 (529)
+..+.+.|+++.++.+| .+.++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 6778999999999999999865322 233457899999999999999999999999999999
Q ss_pred CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009665 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~ 312 (529)
..+.....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 877777889999999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=4.8e-22 Score=186.19 Aligned_cols=188 Identities=18% Similarity=0.198 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 009665 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (529)
Q Consensus 129 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~ 207 (529)
.+-+..|+..|.+++. +.++...+...|++|.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999998 6678888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHhhhhcCCCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHH
Q 009665 208 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (529)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 286 (529)
|..+.+..+++.++|+|++++++.+. .......+++|.|+.+|.+++..++..++|+|++++...++....+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 95455789999999999999998743 22334468999999999999999999999999999988888889999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhcCChhh
Q 009665 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (529)
Q Consensus 287 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 317 (529)
.|+.+|.+++..++..|+++|++++.+....
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999999975543
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=167.45 Aligned_cols=197 Identities=19% Similarity=0.144 Sum_probs=169.6
Q ss_pred ChHHHHHhhcCCCCh--HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009665 115 VVPRFIEFLSRDDFP--QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (529)
.+|.|+++|.+++ + +++..|+++|.+++.++++.+..+++.|+||.|+++|.++++++++.|+|+|.||+.++++.+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999988 6 899999999999998889999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc----------------cCChH
Q 009665 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------SNDDE 256 (529)
Q Consensus 193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------~~d~~ 256 (529)
..+.+.|++++|+.+|..+.+.++++.++.+|++|+...... .....+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999954568899999999999998765333 3344567888887653 13679
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHh-CcHHHHHHhcCC------CCcchHHHHHHHHHHhhcC
Q 009665 257 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG 313 (529)
Q Consensus 257 v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~al~~L~~l~~~ 313 (529)
++.++..+|.+|+..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776666767765 778999999864 2557889999999999874
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=8.7e-20 Score=163.26 Aligned_cols=196 Identities=18% Similarity=0.180 Sum_probs=164.8
Q ss_pred cHHHHHHhhcCCCH--HHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665 72 SLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 72 ~l~~l~~~L~s~~~--~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
.+|.+++.|+++++ .+|..|+..++.+.... .+....+++.|+||.|+++|.+++ +++|..|+|+|.||+.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 78999999999988 89999999999977543 456778889999999999999988 999999999999999988999
Q ss_pred HHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc---------------chh
Q 009665 150 TRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---------------HAK 213 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~---------------~~~ 213 (529)
+..+++.|+||.|+++|. +++.+++++++.+|+|++.... .+..+.+ +++++|+.++.. ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999997 5789999999999999997654 5666666 468888886630 126
Q ss_pred HHHHHHHHHHHhhhhcCC-CCCchhh-hhchHHHHHHhhcc------CChHHHHHHHHHHHHhccC
Q 009665 214 LSMLRNATWTLSNFCRGK-PQPLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~-~~~~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~L~~l~~~ 271 (529)
+.++.++.++|.||+... ....... ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 689999999999999865 2223232 35788999999884 2668899999999999864
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.80 E-value=5.9e-18 Score=177.09 Aligned_cols=343 Identities=12% Similarity=0.132 Sum_probs=248.8
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhH
Q 009665 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCR 192 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~ 192 (529)
.++|.+..++.+++ +.+|..++.+|+.++..... ......+++.+..++.++++.+|..|+++|+.++.... ..+
T Consensus 242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 35666666776666 77777777777777652111 11223567888899988899999999999999884332 111
Q ss_pred HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (529)
Q Consensus 193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~ 272 (529)
.......+++.+..++ .+.++.++..++++|..++..-. .......++|.+..++.+++++|+..++.++..++...
T Consensus 318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG--KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 1122234566777777 67788999999999999886421 11224568899999999999999999999999887543
Q ss_pred chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009665 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (529)
Q Consensus 273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 352 (529)
... .....+++.+..++.+.++.++..++.+++.++...... .+...+++.+..++.++ +..+|..|+.+++.
T Consensus 395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKK 467 (588)
T ss_dssp CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 211 122367888899999999999999999999987522111 11224678888889888 89999999999999
Q ss_pred HhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHH
Q 009665 353 ITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 431 (529)
Q Consensus 353 l~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~ 431 (529)
++.. .++ .....++|.|..++.++++.+|..++++++.++...+.+. ....+++.|..+++++++.++..+
T Consensus 468 l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a 539 (588)
T 1b3u_A 468 LVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----TTKHMLPTVLRMAGDPVANVRFNV 539 (588)
T ss_dssp HHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----HHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHhhCCCCCchHHHHH
Confidence 9873 122 1123488889888888899999999999999986432221 234588999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009665 432 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 493 (529)
Q Consensus 432 l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 493 (529)
+++|..+...... ..+ ....++.|..+..+++++|+..|...+..+-
T Consensus 540 ~~~l~~l~~~~~~--------------~~~-~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 540 AKSLQKIGPILDN--------------STL-QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHGGGSCH--------------HHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhch--------------hhh-HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 9999999864321 111 1334667778889999999999999988763
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=3.4e-18 Score=186.67 Aligned_cols=353 Identities=13% Similarity=0.153 Sum_probs=260.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 152 (529)
-+.+++.|.++++.+|..++.++..++..+. + . .-.++++.|+..+.+++ +.++..++.+|+.++...+.....
T Consensus 92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~--~-~--~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 92 KSECLNNIGDSSPLIRATVGILITTIASKGE--L-Q--NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTT--T-T--TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC--c-c--ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence 3567777888899999999999999987541 1 1 12458899999999988 899999999999999743332111
Q ss_pred HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665 153 VI----DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 153 ~~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
-. -..+++.|++++.+++..+|..|+++++++....+...... -..+++.++..+ .+.++.++..++++|..++
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 00 12357778888888999999999999999886543211000 013566677766 6678899999999999999
Q ss_pred cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh---CcHHHHHHhc-----------CC
Q 009665 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----------RH 294 (529)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~lL-----------~~ 294 (529)
...+.........+++.+...+.+.++.++..+++++..++..... ...+.. .+++.++..+ .+
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 8764333344567889999999999999999999999999875421 112221 4566676666 23
Q ss_pred -----------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009665 295 -----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (529)
Q Consensus 295 -----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (529)
.++.++..|..+|+.++...+.. ++. .+++.+...+.++ ++.+|..|++++++++.+..+....
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~ 396 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP 396 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34567889999999998744322 222 4678888888888 9999999999999999987765544
Q ss_pred HHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHH-HHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 364 l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
.+ .++++.++..+.++++.||..|+|++++++...... ...++ .++++.|+..+.+.++.++..++++|.+++...
T Consensus 397 ~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 397 YL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 33 347999999999999999999999999998632110 01111 246788888888899999999999999998765
Q ss_pred h
Q 009665 443 E 443 (529)
Q Consensus 443 ~ 443 (529)
.
T Consensus 474 ~ 474 (852)
T 4fdd_A 474 C 474 (852)
T ss_dssp G
T ss_pred h
Confidence 4
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.78 E-value=9.8e-18 Score=175.39 Aligned_cols=382 Identities=11% Similarity=0.123 Sum_probs=286.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.++.+...+.++++.+|..|+.++..+..... . ......++|.|..++.+++ +.+|..|+.+|..++...+..
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~---~-~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---L-DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC---H-HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc---H-HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence 35666677788899999999999999875431 1 1223468899999998888 899999999999988643321
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
.....++|.+..++.+++..+|..++.+|+.++..... ......+++.++.++ .+.++.++..+++++..++...
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence 12234788899999999999999999999999743211 112334678888888 6778899999999999998875
Q ss_pred CCCch--hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665 232 PQPLF--EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (529)
Q Consensus 232 ~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~ 309 (529)
+.... .....++|.+..++.+.++.++..++++|+.++...... .....+++.+..++.++++.++..++.+++.
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33211 345778899999999999999999999999987542221 1223578889999999999999999999998
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHH
Q 009665 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 388 (529)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 388 (529)
++...... .....++|.+..++.+. ++.+|..++.+++.++.. .++ .....++|.+...+.+++..+|..|
T Consensus 390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 87643211 12235778888888887 899999999999998752 111 1112267888888988899999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHH
Q 009665 389 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE 468 (529)
Q Consensus 389 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 468 (529)
+.+++.++...+++. ....+++.|..++.++++.++..+++++..+....... .+. ...++
T Consensus 462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----------~~~-----~~~~~ 522 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------ITT-----KHMLP 522 (588)
T ss_dssp HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------HHH-----HHTHH
T ss_pred HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----------HHH-----HHHHH
Confidence 999999987544332 12457888999999999999999999999887653211 011 23467
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665 469 KIENLQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 469 ~l~~L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
.+..+..+++++|+..+.+.+..++..
T Consensus 523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 523 TVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 788888899999999999999888753
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=1.9e-17 Score=180.65 Aligned_cols=394 Identities=15% Similarity=0.150 Sum_probs=277.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 152 (529)
+-.++..+.+.++.+|..|+..|++.+... -.....-....+-+.+++.|.+++ +.+|..++.++..++..+...
T Consensus 50 l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~--- 124 (852)
T 4fdd_A 50 LIFVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ--- 124 (852)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT---
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc---
Confidence 344555456788999999999999988642 111111122345567777888877 899999999999999743111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH----hcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL----SNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~----~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
.-.++++.|+..+.+++..+++.++.+|+.++.+.+.....-. -..+++.++..+ .+.++.++..+++++..+.
T Consensus 125 -~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 125 -NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFI 202 (852)
T ss_dssp -TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTT
T ss_pred -ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence 1135789999999999999999999999999865432211000 012455556666 5678899999999999888
Q ss_pred cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009665 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (529)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~ 308 (529)
...+.........+++.+..++.+++++++..++++|..++....+.....++ ++++.++.++.+.++.++..|+.++.
T Consensus 203 ~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~ 281 (852)
T 4fdd_A 203 ISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWL 281 (852)
T ss_dssp TTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 66433223334578889999999999999999999999999766544333333 57888888889989999999999999
Q ss_pred HhhcCChhhHHHHHh---cCChHHHHHHh-----------cc--C--------CchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009665 309 NIVTGDDMQTQCIIN---HQALPCLLDLL-----------TQ--N--------YKKSIKKEACWTISNITAGNVNQIQAI 364 (529)
Q Consensus 309 ~l~~~~~~~~~~~~~---~~~l~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (529)
.++.... .. ..+. ..+++.++..+ .+ . ....+|+.|+.+|..++...++ .+
T Consensus 282 ~l~~~~~-~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~ 356 (852)
T 4fdd_A 282 TLAEQPI-CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---EL 356 (852)
T ss_dssp HHTTSTT-HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GG
T ss_pred HHhcchh-HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HH
Confidence 9986432 11 1221 13456666666 22 0 1456899999999998874222 12
Q ss_pred HHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009665 365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 444 (529)
Q Consensus 365 ~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~ 444 (529)
+. .+++.+...+.++++.+|..|+++|++++.+.......++ .++++.++.+++++++.|+..++++|+++......
T Consensus 357 ~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 433 (852)
T 4fdd_A 357 LP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS 433 (852)
T ss_dssp HH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 22 3678888888888999999999999999987543222222 35789999999999999999999999998865432
Q ss_pred hhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665 445 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 445 ~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
... ..+. .+.++.|.....++++.++..|.+.+..+..
T Consensus 434 ~~~-------~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 434 QPP-------DTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp SCT-------TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred chH-------HHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 110 0111 1335566666677899999999999988764
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.77 E-value=1.7e-17 Score=172.73 Aligned_cols=332 Identities=16% Similarity=0.181 Sum_probs=225.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.++.+.+.|+++|+.++..|++++.++.. +. + ...+++.+.+++.+++ +.+|..|++++.++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~----~~---~-~~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV----DK---I-TEYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS----GG---G-HHHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh----HH---H-HHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 45677777888889888888887777531 11 1 1235678999999888 99999999999999986666432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
+.+.++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..++..+ .+.++-.+..++.++..++...
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 246789999999999999999999999999987653210101112355666666 4456666777777777766332
Q ss_pred CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC---CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009665 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (529)
Q Consensus 232 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~ 308 (529)
......+++.+..++++.++.|+..|++++.++... +++..+.+.. .+.+.|+.++. +++.++..|+.+|+
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 233467888888999999999999999999999752 2333343332 55677776664 77899999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHH
Q 009665 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 388 (529)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 388 (529)
.++...+..... .+..+. .+.+. +..+|..|++++.+++..+ ++.. +++.|...+.+.+.+++..+
T Consensus 308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~~-----iv~~L~~~l~~~d~~~r~~~ 373 (591)
T 2vgl_B 308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIAQ-----VLAELKEYATEVDVDFVRKA 373 (591)
T ss_dssp HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THHH-----HHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHHH-----HHHHHHHHHhcCCHHHHHHH
Confidence 998754432211 111111 11233 4677888888888776542 1221 45566677777777888888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 389 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 389 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
+++|+.++.... .... .+++.|++++......++..++.++..++...
T Consensus 374 v~aI~~la~~~~-~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~ 421 (591)
T 2vgl_B 374 VRAIGRCAIKVE-QSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY 421 (591)
T ss_dssp HHHHHHHHTTCH-HHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCh-hHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHC
Confidence 888888876532 2222 24567777777777666666666777666543
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.75 E-value=5.9e-15 Score=147.59 Aligned_cols=416 Identities=13% Similarity=0.149 Sum_probs=295.1
Q ss_pred ccHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCC----------------hhhHHh-hcCChHHHHHhhcCCCChHH
Q 009665 71 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSP----------------PINEVI-QSGVVPRFIEFLSRDDFPQL 131 (529)
Q Consensus 71 ~~l~~l~~~L~s--~~~~~~~~a~~~l~~lls~~~~~----------------~~~~~i-~~g~i~~Li~lL~~~~~~~v 131 (529)
.+++.++..|+. .|.++...++..|..+++.+..+ ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 478999999984 57888888999998888754321 122333 5678999999999988 899
Q ss_pred HHHHHHHHHHHhcCChh-hHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc
Q 009665 132 QFEAAWALTNIASGTSE-NTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN 209 (529)
Q Consensus 132 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~ 209 (529)
|..++.+|..++...++ ..+.+.. .++++.|+.+|.+..+.+|..++..|.+++.++++.++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999987777 6666775 499999999999999999999999999999999999999999999999999995
Q ss_pred cch---hHHHHHHHHHHHhhhhcCCC-CCchhhhhchHHHHHHhhccCCh------HHHHH---HHHHHHHhccCCc---
Q 009665 210 EHA---KLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDD------EVLTD---ACWALSYLSDGTN--- 273 (529)
Q Consensus 210 ~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~d~------~v~~~---a~~~L~~l~~~~~--- 273 (529)
... ...+...++.++.+|.+.++ ........+++|.|..++..+++ ....+ ++.++.-++....
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 332 23678889999999999873 34444557899999999875432 23333 5556666654422
Q ss_pred ---hhHHHHHHhCcHHHHHHhcCCC--CcchHHHHHHHHHHhhcCChhhHHHHHhcC---------ChHHHHHHhccCCc
Q 009665 274 ---DKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ---------ALPCLLDLLTQNYK 339 (529)
Q Consensus 274 ---~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~lL~~~~~ 339 (529)
.+...+.+.|++..|+.++... ...++..|+.+++.+..++......+.+.. ++..++.++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 2345688899999999998765 456889999999999999987776665432 23334444555547
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CCH---HHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 009665 340 KSIKKEACWTISNITAGNVNQIQAIIEA----------GII---GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 406 (529)
Q Consensus 340 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~l---~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 406 (529)
..+|.+|+.++..+..++++....++.. +.+ ..++..+-+.|+----.|+.++.++... +++....
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~ 457 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQ 457 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHH
Confidence 8899999999999999887765555542 111 1244555555654444588888998876 3344333
Q ss_pred HHH--------cCC---hHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh
Q 009665 407 LVS--------QGC---IKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ 474 (529)
Q Consensus 407 l~~--------~~~---l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~ 474 (529)
+.. ... ++.+..+|. ..++.+...-+..|...+-.+. .....++.+...++.|....
T Consensus 458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p-----------~AV~dFL~~~s~l~~L~~~i 526 (651)
T 3grl_A 458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP-----------IAVTHFLHNSANVPFLTGQI 526 (651)
T ss_dssp HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHSTTHHHHHHHHH
T ss_pred HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh-----------HHHHHHHcCCchHHHHHHHH
Confidence 332 111 444555554 3456665555555555553332 23566777666777777654
Q ss_pred -cC-C--CHHHHHHHHHHHHhhCCCCCCC
Q 009665 475 -SH-D--NTEIYEKAVKILETYWVEEDED 499 (529)
Q Consensus 475 -~~-~--~~~v~~~a~~il~~~~~~~~~~ 499 (529)
++ . +.-|+..+.-+|.-+|...+++
T Consensus 527 ~~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 527 AENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 32 2 2347888888888777765543
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.72 E-value=1.6e-15 Score=157.93 Aligned_cols=332 Identities=15% Similarity=0.161 Sum_probs=246.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
..++.+++.+.+++..++..+..++..++... + ++. .-+++.|.+-|++++ +.+|..|+.+|+++.. ++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~---e~~-~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--P---DMA-IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--H---HHH-HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--c---hHH-HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence 36788999999999999988888888876432 1 111 125678888899888 9999999999999874 5544
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
..+ ++.+..++.++++.+|..|++++++++...++. +...+.++.+..+| .+.++.++..|+++|..++..
T Consensus 120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence 443 578999999999999999999999998755542 22345678888888 688999999999999999987
Q ss_pred CCCC-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665 231 KPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (529)
Q Consensus 231 ~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~ 309 (529)
.+.. ........++.|+..+...++..+..++.++..++..++... ..+++.+..++.+.++.|+..|++++..
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6433 233345667788888888899999999999998886544322 2567888889999999999999999999
Q ss_pred hhcC---ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHH
Q 009665 310 IVTG---DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 386 (529)
Q Consensus 310 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 386 (529)
+... ++...+.+. ..+.+.|+.++. + ++.+|..|+.+|+.++...++.... .+..+. .+.+++..+|.
T Consensus 266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~ 336 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKL 336 (591)
T ss_dssp SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHH
T ss_pred HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHH
Confidence 8742 233333333 255677776664 5 8899999999999998744432211 122222 22234588999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
.|++.|.+++...+ +.. +++.|..++++.|.+++..++++|..+....
T Consensus 337 ~al~~L~~l~~~~n---v~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 337 EKLDIMIRLASQAN---IAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHHHHHHHTCCSST---HHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCChhh---HHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 99999999986543 222 4667778888889999999999998887543
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.71 E-value=4.8e-16 Score=146.34 Aligned_cols=258 Identities=15% Similarity=0.165 Sum_probs=202.3
Q ss_pred hhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 009665 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190 (529)
Q Consensus 111 i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 190 (529)
...+.++.|+..|.+++ +.++..|+++|+++.. + +.++.|+.++.++++.+|..++++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 35578999999999988 9999999999999873 2 3578899999999999999999999998744322
Q ss_pred hHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009665 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (529)
Q Consensus 191 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~ 270 (529)
... .++.+...+..+.++.++..++++|..+....+ .....+++.|..++.++++.++..++++|+++..
T Consensus 88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 223333333367789999999999999975431 1234678899999999999999999999998754
Q ss_pred CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 350 (529)
.+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 2578999999999999999999999999854332 3467888999888 899999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHH
Q 009665 351 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVT 429 (529)
Q Consensus 351 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~ 429 (529)
+++.. ...++.|+..+.+++ ++..|+++|+.+.. ..+++.|..++.. .+++++.
T Consensus 217 ~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 217 SYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp HHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHH
T ss_pred HHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHHHHHHHhcCCCcHHHH
Confidence 99862 237888899897644 89999999999843 1467888888864 5677777
Q ss_pred HHHHHHH
Q 009665 430 VCLEGLE 436 (529)
Q Consensus 430 ~~l~aL~ 436 (529)
.+..+|.
T Consensus 272 ~~~~~l~ 278 (280)
T 1oyz_A 272 SAIDKLK 278 (280)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7777665
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=1.8e-14 Score=144.14 Aligned_cols=368 Identities=16% Similarity=0.136 Sum_probs=270.6
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCC-CChHHHHHHHHHHHHHhcCChh
Q 009665 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSE 148 (529)
Q Consensus 71 ~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~-~~~~v~~~a~~~L~~l~~~~~~ 148 (529)
+.++.|...+. +.-.+.|..|+..|+.+.... ...+-.++++.|+..|+.+ ++.++...++..|.++...+++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-----~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-----RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-----TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-----HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 47889999888 556889999999999985322 2334457899999999765 3478888899999887764432
Q ss_pred -----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhc-CChHHHHHHh
Q 009665 149 -----------------NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSN-GALMPLLAQF 208 (529)
Q Consensus 149 -----------------~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~-~~i~~l~~~l 208 (529)
..+.++ +.+.++.|+.+|.+.+..+|..++.+|..++...+. .++.++.. ++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 222333 467899999999999999999999999999977766 77777754 8999999999
Q ss_pred ccchhHHHHHHHHHHHhhhhcCCCCCchh-hhhchHHHHHHhhccCC----hHHHHHHHHHHHHhccCCchhHHHHHHhC
Q 009665 209 NEHAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (529)
Q Consensus 209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 283 (529)
.+....++..++..|..|+.+.+..+.. ...++++.|+.++..+. ..+..+|+.++.+|...+..+...+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 6667888999999999999998444443 45799999999998654 47899999999999999877778889999
Q ss_pred cHHHHHHhcCCCCcc------hHH---HHHHHHHHhhcCCh------hhHHHHHhcCChHHHHHHhccCC-chhHHHHHH
Q 009665 284 VCPRLVELLRHPSPS------VLI---PALRTVGNIVTGDD------MQTQCIINHQALPCLLDLLTQNY-KKSIKKEAC 347 (529)
Q Consensus 284 ~~~~L~~lL~~~~~~------v~~---~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~ 347 (529)
.++.|..++..+... ... .++.++.-++..+. .....+.+.|+++.++.++..+. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754322 222 36777777776532 34556779999999999986542 567999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcC---------CHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHc----C--
Q 009665 348 WTISNITAGNVNQIQAIIEAG---------IIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ----G-- 411 (529)
Q Consensus 348 ~~L~nl~~~~~~~~~~l~~~~---------~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~-- 411 (529)
.+++.+.++++.....+.+.. ++..|+.++.+. ..++|.+|++++..+..+.. +....+... .
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~-~~Q~~i~~~llp~~~~ 413 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ-KGQGEIVSTLLPSTID 413 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTSSCCCC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH-HHHHHHHHhcCCcccc
Confidence 999999999888877777633 233344445443 67899999999999998743 322233321 0
Q ss_pred ----Ch---HHHHhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009665 412 ----CI---KPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 445 (529)
Q Consensus 412 ----~l---~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~ 445 (529)
.+ ..|..-+-+.|+--.--+..+|..++..+...
T Consensus 414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~ 454 (651)
T 3grl_A 414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ 454 (651)
T ss_dssp CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence 01 12334444456533333555677777665443
No 48
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.71 E-value=4e-15 Score=155.38 Aligned_cols=227 Identities=17% Similarity=0.114 Sum_probs=154.2
Q ss_pred hccCCCCchHHHhhhHHHHHHHHHHhhHH-------HHHhhhhhcccCCCCccchhhhhhhhhccHHHHHHhhcCCCHHH
Q 009665 15 KYKVAVDAEEGRRRREDNMVEIRKNKREE-------SLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNI 87 (529)
Q Consensus 15 ~~k~~~~~~e~r~~r~~~~~~lRk~~r~~-------~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~~~~~ 87 (529)
..++..+.+|.+++-.....++|+.=++. .+.|---..+..... -.....+++.+.+++...
T Consensus 18 ~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~-----------~~~~~~vik~~~s~~~~~ 86 (618)
T 1w63_A 18 TIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA-----------HFGQLECLKLIASQKFTD 86 (618)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC-----------GGGHHHHHHHHHSSSHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC-----------cchHHHHHHHHcCCchHH
Confidence 34444555666666666667777663222 222222111111110 135678888889999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC
Q 009665 88 QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 167 (529)
Q Consensus 88 ~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 167 (529)
+..+...+..++... + +.++ -+++.|.+-|.+++ +.++..|+++|+++.. ++... .+++.+..++.
T Consensus 87 Krl~Yl~~~~~~~~~--~--e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L~ 152 (618)
T 1w63_A 87 KRIGYLGAMLLLDER--Q--DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLLK 152 (618)
T ss_dssp HHHHHHHHHHHCCCC--H--HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--c--HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHHc
Confidence 988888888876432 1 1111 15678888888888 8999999999999985 44332 35688899999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHH
Q 009665 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 247 (529)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~ 247 (529)
++++.+|..|+.++++++...++.. .++++.+..++ .+.++.++..++++|..++...+.. ......++|.++
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~ 225 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLV 225 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHH
Confidence 9999999999999999987655432 14667777777 6788999999999999998764221 223456677777
Q ss_pred Hhhcc---------------CChHHHHHHHHHHHHhccCCc
Q 009665 248 RLIHS---------------NDDEVLTDACWALSYLSDGTN 273 (529)
Q Consensus 248 ~ll~~---------------~d~~v~~~a~~~L~~l~~~~~ 273 (529)
.+|.. .++..+..++.+|..++..++
T Consensus 226 ~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~ 266 (618)
T 1w63_A 226 RILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD 266 (618)
T ss_dssp HHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence 66652 477888888888888876543
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.67 E-value=6.2e-15 Score=138.68 Aligned_cols=254 Identities=15% Similarity=0.120 Sum_probs=200.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
..++.++..|.++++.++..|+..|..+.. .+.++.|+.+|.+++ +.++..|+++|+.+.... ...
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~-~~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICK-KCE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCT-TTH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccc-ccc
Confidence 478999999999999999999999998741 236789999999988 999999999999987522 211
Q ss_pred HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665 151 RVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 151 ~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
.. +++.|. .++.++++.++..++++|+.+....+.... .+++.++..+ .+.++.++..++++|..+..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 11 234444 345678999999999999999743332211 2467888888 77889999999999998754
Q ss_pred CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (529)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~ 309 (529)
...+|.|+.++.++++.|+..++++|+.+..... .+++.|+.++.++++.++..|+++|++
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2478999999999999999999999999854332 456888999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHH
Q 009665 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEA 388 (529)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a 388 (529)
+.. ...++.|...+.++ + +|..|+++|+.+.. + ..+|.|..++.+. ++++...+
T Consensus 219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence 862 25678899999765 3 89999999999854 2 3788999998764 77888888
Q ss_pred HHHHH
Q 009665 389 AWAIS 393 (529)
Q Consensus 389 ~~aL~ 393 (529)
..+|.
T Consensus 274 ~~~l~ 278 (280)
T 1oyz_A 274 IDKLK 278 (280)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77764
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.66 E-value=6e-15 Score=161.44 Aligned_cols=354 Identities=14% Similarity=0.230 Sum_probs=246.7
Q ss_pred cHHHHHHhhcC-------CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009665 72 SLPAMVAGVWS-------DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 72 ~l~~l~~~L~s-------~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~ 144 (529)
.+|.++..+.. ++..++..+...|..+..... ..++ ..+++.+.+.+.+.+ +.+|..|+++++.++.
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~----~~~~-~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG----NHIL-EPVLEFVEQNITADN-WRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG----GGGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc----HhHH-HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence 46677777764 235788888888888764321 1112 236677777888877 8999999999999998
Q ss_pred CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHHHhccchhHHHHHHH
Q 009665 145 GTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEHAKLSMLRNA 220 (529)
Q Consensus 145 ~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~~~~~a 220 (529)
+.. +.....+. .+++.|+..+.++++.+|..++|+++.++...... ... -..+++.++..+ .+. +.++..+
T Consensus 399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a 473 (861)
T 2bpt_A 399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNC 473 (861)
T ss_dssp SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHH
Confidence 643 33333332 47889999999999999999999999998432110 011 112466777777 333 7899999
Q ss_pred HHHHhhhhcCCC----CCchhhhhchHHHHHHhhccCC--hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009665 221 TWTLSNFCRGKP----QPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294 (529)
Q Consensus 221 ~~~L~~l~~~~~----~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 294 (529)
+|++.+++.... .........+++.|+..+.+.+ +.++..++.+++.++..........+. .+++.++..+..
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~ 552 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ 552 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence 999999987532 2223455778888889988544 789999999999998665444333333 456666666542
Q ss_pred ---------------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCch-hHHHHHHHHHHHHhcCCH
Q 009665 295 ---------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNITAGNV 358 (529)
Q Consensus 295 ---------------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~ 358 (529)
....++..++.+|++++............ .+++.+...+.+. +. .++..++++++.++....
T Consensus 553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~ 630 (861)
T 2bpt_A 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG 630 (861)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence 13456778999999998755433222222 5677788888777 56 899999999999987422
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC--HHHHHHHHHHHH
Q 009665 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLE 436 (529)
Q Consensus 359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~~l~aL~ 436 (529)
......+.. ++|.++..+.++++.++..|+.+++.++...+.....++ ..+++.+...+.+.+ ++++..++.++.
T Consensus 631 ~~~~~~l~~-i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 631 KGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp GGGHHHHHH-HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred hhHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 222233332 889999999888889999999999999876543333333 246777788887654 889999999999
Q ss_pred HHHHhh
Q 009665 437 NILKAG 442 (529)
Q Consensus 437 ~l~~~~ 442 (529)
.++...
T Consensus 708 ~l~~~~ 713 (861)
T 2bpt_A 708 DIASNI 713 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.65 E-value=1.5e-14 Score=158.32 Aligned_cols=401 Identities=12% Similarity=0.135 Sum_probs=268.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH-H
Q 009665 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-R 151 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~ 151 (529)
++.+.+.+.+.+...+..|+.++..++...........+. .+++.|+..+.+++ +.+|..++|+|+.++....... .
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 4555566678889999999999999885431122222222 47889999999888 9999999999999986311100 0
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chhHHHHHhcCChHHHHHHhcc-chhHHHHHHHHHHHh
Q 009665 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----PKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLS 225 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~ 225 (529)
.-.-..+++.++..+.++ +.++..+++++.+++... ......+ ..+++.++..+.. +.+..++..++.++.
T Consensus 449 ~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 000113568888888775 899999999999987431 1122222 1246667777742 334788999999999
Q ss_pred hhhcCCCCCchhhhhchHHHHHHhhccC---------------ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHH
Q 009665 226 NFCRGKPQPLFEQTRPALPALERLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290 (529)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~---------------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 290 (529)
.++...+.........++|.++..+... ...++..++.+|..++............ .+++.++.
T Consensus 526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~ 604 (861)
T 2bpt_A 526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR 604 (861)
T ss_dssp HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Confidence 9988765444445567777777766521 3457888999999988654432222222 57778888
Q ss_pred hcCCCCc-chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009665 291 LLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369 (529)
Q Consensus 291 lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 369 (529)
.+.+.+. .++..++.+++.++..........+. .+++.+...+.++ ++.++..++++++.++....+.....+ ..+
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l 681 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAM 681 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHH
Confidence 8887766 89999999999998754433333333 4788899999776 788999999999999874333333333 237
Q ss_pred HHHHHHHHhcCC--hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC-----------HHHHHHHHHHHH
Q 009665 370 IGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD-----------PRIVTVCLEGLE 436 (529)
Q Consensus 370 l~~L~~~l~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-----------~~v~~~~l~aL~ 436 (529)
++.++..+.+.+ +++|..++.+++.++.........++- .+++.|...+.... ..++..+++++.
T Consensus 682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~ 759 (861)
T 2bpt_A 682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV 759 (861)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 888888888764 889999999999998754444445442 36777887776431 357788888888
Q ss_pred HHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCC----CHHHHHHHHHHHHhhCC
Q 009665 437 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD----NTEIYEKAVKILETYWV 494 (529)
Q Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~----~~~v~~~a~~il~~~~~ 494 (529)
.++...... ...+...+. ..++.|.....+. +.+++..|..++..+..
T Consensus 760 ~i~~~l~~~--------~~~~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 760 GIVAGLHDK--------PEALFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHTTTC--------HHHHGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccC--------HHHHHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 887543210 001111111 1244454444342 78999999888887754
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.61 E-value=2.2e-14 Score=145.14 Aligned_cols=390 Identities=12% Similarity=0.106 Sum_probs=267.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHH
Q 009665 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
+..++..+.++|...|..|-..|.++.... ..+++..|+.++.+++ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 556777788999999999999998854210 1246677888887652 388999999999998764311100
Q ss_pred H-----------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch--hHHHHH
Q 009665 152 V-----------VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLR 218 (529)
Q Consensus 152 ~-----------~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~ 218 (529)
. -....+-..|+..+.+++..+ ..++.+++.++...... . .-.+.++.++..+ .+. ++.++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l-~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANV-TNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHh-ccCCCCHHHHH
Confidence 0 001123356777888877778 88999999997432110 0 0124677788888 445 788999
Q ss_pred HHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccC--ChHHHHHHHHHHHHhccCCchhHH-HHHHhCcHHHHHHhcCC
Q 009665 219 NATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRH 294 (529)
Q Consensus 219 ~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~ 294 (529)
.++.+|..++... +.........+++.+...+.++ ++.++..++++++++...-.+... .....-+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999999754 2222334467888899999887 789999999999987654221111 01111246667777888
Q ss_pred CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH---------------
Q 009665 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--------------- 359 (529)
Q Consensus 295 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--------------- 359 (529)
+++.++..++.+|+.++..........+...+++.++..+.+. ++.++..|++.++.++.....
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 307 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 8899999999999999876554322222226777778888877 889999999999988753110
Q ss_pred ------HHHHHHHcCCHHHHHHHHhc-------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHH
Q 009665 360 ------QIQAIIEAGIIGPLVNLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426 (529)
Q Consensus 360 ------~~~~l~~~~~l~~L~~~l~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 426 (529)
.....+ ..++|.++..+.. +++.+|..|+.+|..++......... .+++.+...+.+.++.
T Consensus 308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWR 381 (462)
T ss_dssp SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHH
T ss_pred cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChH
Confidence 111111 2367777777753 24579999999999998754422222 3577888889999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 427 v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
++..++.+|+.+........ +...+ ...++.|..+..++++.|+..|.+.|.++...
T Consensus 382 ~r~aal~~l~~l~~~~~~~~----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHH----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999998875322100 01111 34577788888899999999999999998754
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.61 E-value=4.2e-14 Score=155.02 Aligned_cols=396 Identities=15% Similarity=0.176 Sum_probs=249.9
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665 73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 73 l~~l~~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
++.+...+.++ +..++..|+.++..++..-............+++.+...+.+++ ++++..++++|..++...+...
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~ 252 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYM 252 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHHH
Confidence 44566667765 68899999999999875421100111111236777888887777 8999999999999998655554
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch------------------hHHHH--HhcCChHHHHHHhcc
Q 009665 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------------------CRDLV--LSNGALMPLLAQFNE 210 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~------------------~~~~~--~~~~~i~~l~~~l~~ 210 (529)
...+...+++.++..+.+.++.++..+++++.+++..... ..... .-..+++.++..+..
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 332 (876)
T 1qgr_A 253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332 (876)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence 4445457889999888888999999999999988743110 00000 001245566666632
Q ss_pred ------chhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc-hhHHHHHHhC
Q 009665 211 ------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAG 283 (529)
Q Consensus 211 ------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~ 283 (529)
+.+..++..+..++..++...+ ......+++.+...+.+.++.++..++++++.++.... +...... ..
T Consensus 333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~ 408 (876)
T 1qgr_A 333 QDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQ 408 (876)
T ss_dssp CCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HH
Confidence 2345788888899988877543 12356778888888888899999999999999997654 3333333 36
Q ss_pred cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH--HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH---
Q 009665 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV--- 358 (529)
Q Consensus 284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~--- 358 (529)
+++.++..+.++++.++..|++++++++....... ...+ ..+++.++..+.+ ++.++..++|+|++++....
T Consensus 409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~ 485 (876)
T 1qgr_A 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAA 485 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhcc
Confidence 88999999999999999999999999997543311 0111 2456777788865 37899999999999985311
Q ss_pred -----------HHHHHHHHcCCHHHHHHHHhcC---ChhHH---------------------------------------
Q 009665 359 -----------NQIQAIIEAGIIGPLVNLLLNA---EFEIK--------------------------------------- 385 (529)
Q Consensus 359 -----------~~~~~l~~~~~l~~L~~~l~~~---~~~v~--------------------------------------- 385 (529)
+.....+ ..+++.|+..+... +..++
T Consensus 486 ~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 564 (876)
T 1qgr_A 486 DVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQM 564 (876)
T ss_dssp SCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0010111 12445555554432 12344
Q ss_pred -----------------HHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhccCCCC--HHHHHHHHHHHHHHHHhhhhh
Q 009665 386 -----------------KEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGEAE 445 (529)
Q Consensus 386 -----------------~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~~l~aL~~l~~~~~~~ 445 (529)
..+++++..++...+ .....++ ..+++.|..+++... +.++..++.++..++......
T Consensus 565 ~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~ 642 (876)
T 1qgr_A 565 ESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE 642 (876)
T ss_dssp TTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG
T ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh
Confidence 444445555544333 2222222 235677777787654 478889999999988653221
Q ss_pred hhcCCCCccchHHHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhh
Q 009665 446 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETY 492 (529)
Q Consensus 446 ~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~~ 492 (529)
..+|... .++.+.....+ .+++++..|...+..+
T Consensus 643 --------~~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 643 --------FLKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp --------GGGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred --------HHHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 1122222 23444444333 3777877776665544
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.60 E-value=3e-14 Score=156.22 Aligned_cols=405 Identities=14% Similarity=0.156 Sum_probs=262.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh---
Q 009665 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN--- 149 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~--- 149 (529)
++.+...+.+.++.++..|+.++..++............ ..++|.++..+.+++ +.+|..|+|+|++++...+..
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhccc
Confidence 455666778889999999999999987543111122222 358899999999888 999999999999999743321
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---------------hhHHHHHhcCChHHHHHHhccch--
Q 009665 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP---------------KCRDLVLSNGALMPLLAQFNEHA-- 212 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---------------~~~~~~~~~~~i~~l~~~l~~~~-- 212 (529)
...+ ..+++.|+..+.++ +.++..++|+|++++.... .+...+ ..+++.++..+....
T Consensus 446 ~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 446 DVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH 520 (876)
T ss_dssp TTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred HHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence 1111 24567888888774 8999999999999984311 011111 124566666664321
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc-----------CC----hHHHHHHHHHHHHhccCCc-hhH
Q 009665 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----------ND----DEVLTDACWALSYLSDGTN-DKI 276 (529)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----------~d----~~v~~~a~~~L~~l~~~~~-~~~ 276 (529)
+..++..+..++..++...+.........++|.++..+.. .| ++++..+++++..++.... ...
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 3467778888888888876444445566777777766652 22 4567889999999987655 333
Q ss_pred HHHHHhCcHHHHHHhcCCCC--cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHh
Q 009665 277 QAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (529)
Q Consensus 277 ~~~~~~~~~~~L~~lL~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 354 (529)
.... ..+++.++.++.+.. +.++..++.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++
T Consensus 601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 3233 267888888888764 468899999999998743322222222 367788888876536789999999999998
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHHhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC--------
Q 009665 355 AGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD-------- 424 (529)
Q Consensus 355 ~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-------- 424 (529)
..........+. .+++.++..+.+ .+.+++..+++++++++.....+...++ ..+++.|...++...
T Consensus 679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~ 755 (876)
T 1qgr_A 679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV 755 (876)
T ss_dssp HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence 742222333332 478888888887 3678999999999999864333333333 235666777665432
Q ss_pred ---HHHHHHHHHHHHHHHHhhhhhhh--cCCCCccchHHHHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHhhCC
Q 009665 425 ---PRIVTVCLEGLENILKAGEAEKN--MGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWV 494 (529)
Q Consensus 425 ---~~v~~~~l~aL~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~--~~~v~~~a~~il~~~~~ 494 (529)
..++..++.++..++........ ..+.....+|...+ ++.+..+..++ +..++..|..+|..+..
T Consensus 756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 26788888888888765321100 00000112232222 34455554555 78999999888877654
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.60 E-value=2.3e-14 Score=149.67 Aligned_cols=289 Identities=16% Similarity=0.116 Sum_probs=203.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
-.+..+.+.|+++++.++..|++++.++.. + .+. ..+++.+..+|.+.+ +.+|..|+.++.++...+++..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence 357788888999999999999999999852 1 222 246888999999988 9999999999999998777643
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------------chhHHH
Q 009665 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSM 216 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~ 216 (529)
. +.++.+..+|.+.++.++..|+++|+.++..++.....+ ...++.++..|.. ..++-.
T Consensus 178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 2 678888899999999999999999999997765432222 2467778877742 135667
Q ss_pred HHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc------cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHH
Q 009665 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290 (529)
Q Consensus 217 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 290 (529)
+..++.+|..++...+. ......+.|..++. +.+..+...+++++..+...+ . +.. .++..|..
T Consensus 251 q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~-~----l~~-~a~~~L~~ 320 (618)
T 1w63_A 251 QVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES-G----LRV-LAINILGR 320 (618)
T ss_dssp HHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH-H----HHH-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH-H----HHH-HHHHHHHH
Confidence 77788888888765421 12234444444442 224567888888888765421 1 111 35677777
Q ss_pred hcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 009665 291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370 (529)
Q Consensus 291 lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 370 (529)
++.++++.++..|+.+|+.++...+... . ...+.++.++.++ +..+|..|..++..++.... +.. ++
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv 387 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM 387 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHH----H-HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence 7887788888888888888887544322 1 3456677777777 77888888888888876421 122 34
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665 371 GPLVNLLLNAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 371 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (529)
+.|...+.+.+.+++..++.+|+.++..
T Consensus 388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 388 KELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 5666677777778888888888887763
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.58 E-value=2.5e-13 Score=154.07 Aligned_cols=406 Identities=12% Similarity=0.145 Sum_probs=271.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.++.++..+.+.|+++|..|...|.+.+.... .....-....+++.|++.|.+.+ +.+|..|+.+|..++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~-~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccc-cCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 47889999999999999999999998775431 11111122346788999998877 999999999999999755441
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh------HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHh
Q 009665 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC------RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 225 (529)
.+ ..+++.|+..+.+++..+|..++.+|+.++...... ... .-..+++.++..+..+.+..++..++.++.
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 135688888888888899999999999998433211 011 122367888888843567889999999999
Q ss_pred hhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-CcchHHHHH
Q 009665 226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPAL 304 (529)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~al 304 (529)
.++...+.........+++.+...+.++++.++..++.+++.++....+. ++ ..+++.++..|.+. +..++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence 99865432222345778888999999889999999999999999765432 22 25677788777554 356788899
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh------
Q 009665 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------ 378 (529)
Q Consensus 305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~------ 378 (529)
.+++.++..........+ ..+++.++..+.+. ++.+|..+++++..++...++.....+. .+++.++..+.
T Consensus 236 ~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCC
Confidence 999999875443222112 36788999999887 8899999999999988743322111111 13333333221
Q ss_pred -------------------------------cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHH
Q 009665 379 -------------------------------NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 427 (529)
Q Consensus 379 -------------------------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v 427 (529)
+..+++|..|+.++..++.........++ ..+++.|...+.+.+..+
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~V 390 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENV 390 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHH
Confidence 11246799999999999875332222332 457888999998889999
Q ss_pred HHHHHHHHHHHHHhhhhhhhc-CCC------Ccc-chHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665 428 VTVCLEGLENILKAGEAEKNM-GNT------GGV-NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 428 ~~~~l~aL~~l~~~~~~~~~~-~~~------~~~-~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
+..++.++..++......... ... .+. ..+...+ ...++.+.....++++.++..+...+..+...
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 999999998887643210000 000 000 0011111 12355566667788888888887777766543
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.58 E-value=1.8e-14 Score=145.88 Aligned_cols=358 Identities=15% Similarity=0.130 Sum_probs=242.2
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCCh----------hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHH
Q 009665 73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPP----------INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALT 140 (529)
Q Consensus 73 l~~l~~~L~s~--~~~~~~~a~~~l~~lls~~~~~~----------~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~ 140 (529)
+..++..+.+. ++.+|..|+..|++++.....+. ...-....+-..|+..|.+++ +.+ ..++.++.
T Consensus 37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~ 114 (462)
T 1ibr_B 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVA 114 (462)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHH
Confidence 34455555543 68899999999999885421000 000111224456778888877 778 88999999
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-chh-HHHHHhcCChHHHHHHhccch-hHH
Q 009665 141 NIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS-PKC-RDLVLSNGALMPLLAQFNEHA-KLS 215 (529)
Q Consensus 141 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~-~~~~~~~~~i~~l~~~l~~~~-~~~ 215 (529)
.++....... .-.++++.|+..+.++ ++.+++.++.+|+.++.+. +.. ...+ ..+++.++..+.... +..
T Consensus 115 ~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~ 189 (462)
T 1ibr_B 115 GIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNN 189 (462)
T ss_dssp HHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHH
Confidence 9987321100 0146789999999887 8999999999999998543 211 1111 125667777774332 688
Q ss_pred HHHHHHHHHhhhhcCCC-C-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC
Q 009665 216 MLRNATWTLSNFCRGKP-Q-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293 (529)
Q Consensus 216 ~~~~a~~~L~~l~~~~~-~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 293 (529)
++..+++++.++..... . ........+++.+...+.+.+++++..++++|..++..........+..++++.++..+.
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (462)
T 1ibr_B 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (462)
T ss_dssp HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999998764321 0 001111235677777788889999999999999998654433222222266777788888
Q ss_pred CCCcchHHHHHHHHHHhhcCChh---------------------hHHHHHhcCChHHHHHHhccC------CchhHHHHH
Q 009665 294 HPSPSVLIPALRTVGNIVTGDDM---------------------QTQCIINHQALPCLLDLLTQN------YKKSIKKEA 346 (529)
Q Consensus 294 ~~~~~v~~~al~~L~~l~~~~~~---------------------~~~~~~~~~~l~~L~~lL~~~------~~~~v~~~a 346 (529)
+.++.++..|+.+++.++..... .....+ ..++|.++..+... .++.+|..|
T Consensus 270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHH
Confidence 88899999999999998763200 010011 23566666666432 146799999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHH
Q 009665 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426 (529)
Q Consensus 347 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 426 (529)
+.+|..++...++ .++. .+++.+...+.+.++.+|..|+.+++.++.+..++.....+ ..+++.++.++.++++.
T Consensus 349 ~~~L~~l~~~~~~---~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~ 423 (462)
T 1ibr_B 349 GVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV 423 (462)
T ss_dssp HHHHHHHHHHTTT---THHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence 9999999874332 1222 36778888888889999999999999999865422211111 45789999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 009665 427 IVTVCLEGLENILKAGE 443 (529)
Q Consensus 427 v~~~~l~aL~~l~~~~~ 443 (529)
|+..++++|.++.....
T Consensus 424 Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 424 VRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999987653
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.53 E-value=3e-13 Score=153.42 Aligned_cols=398 Identities=12% Similarity=0.145 Sum_probs=263.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh----hhHHhhcCChHHHHHhhcC-CCChHHHHHHHHHHHHHhcCC
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGT 146 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~----~~~~i~~g~i~~Li~lL~~-~~~~~v~~~a~~~L~~l~~~~ 146 (529)
.++.++..+.++++.+|..|+.++..++..-.... ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 46677888888888999999999998876432210 1111233588999999984 66 899999999999998522
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (529)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 226 (529)
+...... -..+++.|+..+.+++..+|..|+.+|+.++...+. .+ -...++.++..+....+..++..++.++..
T Consensus 166 ~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 1111000 123567788888888899999999999999865432 11 223577788777544344567778888888
Q ss_pred hhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC------------
Q 009665 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------------ 294 (529)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~------------ 294 (529)
++...+..-......++|.+...+.+++++++..+++++..++..........+. .+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccccc
Confidence 8876433333455789999999999889999999999999988654432222222 345555554431
Q ss_pred -------------------------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHH
Q 009665 295 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (529)
Q Consensus 295 -------------------------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 349 (529)
..+.++..|+.+++.++...+......+. .+++.+...+.+. +..+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCC-chHHHHHHHHH
Confidence 12356888999999998754433333443 6778888888777 78999999998
Q ss_pred HHHHhcC--C-----------------HHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009665 350 ISNITAG--N-----------------VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ 410 (529)
Q Consensus 350 L~nl~~~--~-----------------~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 410 (529)
+..++.. . ......++ ..+++.+...+.+.++.+|..++.+|+.++.........++ .
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~ 474 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--P 474 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--H
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--H
Confidence 8877651 0 11122222 22567777778888999999999999999875321111121 2
Q ss_pred CChHHHHhccCCCCH--HHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHH
Q 009665 411 GCIKPLCDLLNCPDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 488 (529)
Q Consensus 411 ~~l~~L~~lL~~~~~--~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~i 488 (529)
.+++.+...|.+..+ .++..++.++..++..... ..+...+. ..++.+.....+.+..++..|...
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~----------~~~~~~l~--~llp~L~~~l~d~~~~v~~~al~~ 542 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP----------QVFHPHVQ--ALVPPVVACVGDPFYKITSEALLV 542 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG----------GGGHHHHT--TTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH----------HHHHhHHH--HHHHHHHHHHcccchHHHHHHHHH
Confidence 367888888887654 7888888888887753211 11222332 235666666667777777667666
Q ss_pred HHhhC
Q 009665 489 LETYW 493 (529)
Q Consensus 489 l~~~~ 493 (529)
+..+.
T Consensus 543 l~~l~ 547 (1230)
T 1u6g_C 543 TQQLV 547 (1230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.46 E-value=4.3e-12 Score=112.79 Aligned_cols=184 Identities=20% Similarity=0.237 Sum_probs=157.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCch
Q 009665 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (529)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (529)
+..+.++.+|.++++.+|..|+++|+.+.. ...++.|+..+ .+.++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 457889999999999999999999998753 13578899999 67789999999999998743
Q ss_pred hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh
Q 009665 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (529)
Q Consensus 237 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 316 (529)
...++.|+.++.++++.++..++++|+.+... ..++.|+.++.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 35789999999999999999999999998541 467889999999999999999999999853
Q ss_pred hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009665 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (529)
Q Consensus 317 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (529)
...++.|..++.++ ++.+|..|+++|+.+. .+. .++.|..++.++++.+|..|..+|.++-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24678899999988 9999999999999994 233 5678888899999999999999999874
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=3.5e-12 Score=114.30 Aligned_cols=188 Identities=20% Similarity=0.227 Sum_probs=157.9
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCc
Q 009665 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (529)
Q Consensus 156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 235 (529)
.+.++.|+.+|.+++..+|..++++|+.+.. ...++.|+..+ .+.++.++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 4578999999999999999999999999753 13678899999 67789999999999998753
Q ss_pred hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009665 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (529)
Q Consensus 236 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 315 (529)
...++.|+.++.++++.++..++++|+.+.. .+.++.|+.++.++++.++..|+.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 3678999999999999999999999999854 2467889999999999999999999999853
Q ss_pred hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (529)
Q Consensus 316 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 395 (529)
...++.|..++.++ ++.+|..|+++|+.+.. +. .++.|..++.++++.||..|..+|.++
T Consensus 142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 24678899999888 99999999999999953 22 567888889999999999999999999
Q ss_pred hcCC
Q 009665 396 TSGG 399 (529)
Q Consensus 396 ~~~~ 399 (529)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7653
No 61
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.44 E-value=2.1e-10 Score=119.39 Aligned_cols=329 Identities=12% Similarity=0.117 Sum_probs=233.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
.....+++.+.+++...+..+..++..++... + +.++- +++.+.+=|++++ +.++..|+++|+++.. ++..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~ 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence 36788999999999999999988888876432 1 11111 4567888888888 9999999999999975 5544
Q ss_pred HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665 151 RVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
.. +++.+.+++ .+.++.||..|+.++..+....++ .+...+.++.+..+| .+.++.++..++.++..++
T Consensus 145 ~~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 145 EA-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HH-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence 43 468889999 889999999999999999865543 222247888899998 7789999999999999998
Q ss_pred cCCCCCchhhhhchHHHHH----HhhccC-------------ChHHHHHHHHHHHHhccCCc-hhHHHHHHhCcHHHHHH
Q 009665 229 RGKPQPLFEQTRPALPALE----RLIHSN-------------DDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVE 290 (529)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~----~ll~~~-------------d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ 290 (529)
...+. .....+|.++ +++... ++..+...+..+..++...+ +....+. +++..++.
T Consensus 216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~ 289 (621)
T 2vgl_A 216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILN 289 (621)
T ss_dssp HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHH
T ss_pred HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHH
Confidence 86532 1223444444 443321 67899999999998886432 2222222 23444443
Q ss_pred hcC---------CCCc--chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 009665 291 LLR---------HPSP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (529)
Q Consensus 291 lL~---------~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (529)
.+. +.+. .+...|+.++..+.. .+.... .++..|..+|.++ ++.+|..|+.+|..++...+.
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~ 362 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS 362 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc
Confidence 321 1122 677788888888753 232222 3566788888877 899999999999999986442
Q ss_pred HHHHHHHcCCHHHHHHHHh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHH
Q 009665 360 QIQAIIEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 438 (529)
Q Consensus 360 ~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l 438 (529)
. ..+ ....+.++.++. ++|..++..++..|..++. ...+.. ++..|...+...|.+++..++.++..+
T Consensus 363 ~--~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 363 H--EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp H--HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred H--HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 122 236788888898 8899999999999999975 344444 355666677777888888777777776
Q ss_pred HHh
Q 009665 439 LKA 441 (529)
Q Consensus 439 ~~~ 441 (529)
...
T Consensus 432 a~k 434 (621)
T 2vgl_A 432 AEK 434 (621)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.44 E-value=3.7e-12 Score=114.11 Aligned_cols=188 Identities=21% Similarity=0.217 Sum_probs=158.4
Q ss_pred hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009665 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (529)
Q Consensus 112 ~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (529)
..+.++.|+.+|.+++ +.++..|++.|+.+.. .+.++.|+.++.++++.++..++++|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred CHhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 3467899999999888 9999999999998764 2568999999999999999999999999852
Q ss_pred HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~ 271 (529)
.+.++.|+..+ .+.++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 ------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 ------ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred ------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 13578888888 77889999999999998853 3578999999999999999999999999853
Q ss_pred CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
...++.|..++.++++.++..|+.+|+.+.. ...++.|..++.++ ++.+|..|..+|.
T Consensus 142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLE 199 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 1467889999999999999999999999853 13567788899888 8999999999999
Q ss_pred HHhcC
Q 009665 352 NITAG 356 (529)
Q Consensus 352 nl~~~ 356 (529)
++...
T Consensus 200 ~~~~~ 204 (211)
T 3ltm_A 200 THKSF 204 (211)
T ss_dssp C----
T ss_pred hcCCC
Confidence 98774
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.42 E-value=5.1e-12 Score=112.30 Aligned_cols=186 Identities=22% Similarity=0.234 Sum_probs=158.7
Q ss_pred hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009665 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (529)
Q Consensus 112 ~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (529)
..+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.+|.++++.++..++++|+.+...
T Consensus 12 ~~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~---- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE---- 75 (201)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred CCcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----
Confidence 3457789999999999 9999999999998764 24689999999999999999999999998521
Q ss_pred HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~ 271 (529)
..++.++..+ .+.++.++..++++|..+.. ...++.|..++.++++.|+..++++|+.+..
T Consensus 76 -------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 76 -------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred -------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 3578888888 67889999999999998743 3578899999999999999999999999853
Q ss_pred CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
...++.|..++.++++.++..|+.+|+.+.. + ..++.|..++.++ ++.+|..|.++|.
T Consensus 137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLE 194 (201)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 2567889999999999999999999999842 2 3567888889888 8999999999999
Q ss_pred HHh
Q 009665 352 NIT 354 (529)
Q Consensus 352 nl~ 354 (529)
.+.
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 874
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.36 E-value=2.6e-11 Score=126.15 Aligned_cols=367 Identities=12% Similarity=0.126 Sum_probs=240.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhh--cCCCChHHHHHHHHHHHHHhcCChhh
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL--SRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL--~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
.+..+.+.|+++++.++-.|++++.++.. + .+.+ .+++.+.++| .+.+ +.+|..|+.++..+...+|+.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~---e~~~-~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS----R---EMAE-AFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----H---HHHH-HHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC----H---HHHH-HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence 45677778889999999999999999742 1 2222 4678888998 7777 999999999999999866654
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc----c--c----------hh
Q 009665 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----E--H----------AK 213 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~----~--~----------~~ 213 (529)
.. ..+.++.+..+|.+.++.++..|+.++..++..++.. + ...++.++..|. . . .+
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 32 2478999999999999999999999999998765431 1 123444444332 1 1 14
Q ss_pred HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh---------ccCC--hHHHHHHHHHHHHhccCCchhHHHHHHh
Q 009665 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA 282 (529)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll---------~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 282 (529)
+=.+..++..+..++............++++.++..+ ++.+ ..|...++.++..+... .+ +..
T Consensus 255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~----~~~- 328 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PN----LLV- 328 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HH----HHH-
T ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-HH----HHH-
Confidence 5677777777777765321111112223444444322 1122 37888899999888632 22 222
Q ss_pred CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHH
Q 009665 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQI 361 (529)
Q Consensus 283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~ 361 (529)
.++..|..+|.+.++.++..++.+|..++...+. .. .+. .....++..|. ++ +..+|..++.++..++. +.++
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv 402 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-THIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA 402 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-HHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence 4567888999888999999999999999986542 11 222 46778888888 77 89999999999999984 4444
Q ss_pred HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 362 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
.. ++..|...+...+.+++..++.+++.++..-.+.. . -++..|++++......+...+...+..++..
T Consensus 403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~-----~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~ 471 (621)
T 2vgl_A 403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-T-----WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471 (621)
T ss_dssp HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-H-----HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-H-----HHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 43 45567888888899999999999999875311111 1 1355666666644433444445555555544
Q ss_pred hhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhhCC
Q 009665 442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWV 494 (529)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~~~~ 494 (529)
.+..+. + .+. ..++.+... ....+...|.|++..|-+
T Consensus 472 ~~~~~~---------~--~~~-----~l~~~l~~~~~~~~li~~~~wilGEy~~ 509 (621)
T 2vgl_A 472 RDDVQG---------Y--AAK-----TVFEALQAPACHENLVKVGGYILGEFGN 509 (621)
T ss_dssp GCSCHH---------H--HHH-----HHHHHHTSSSCCHHHHHHHHHHHHHHTH
T ss_pred ChhHHH---------H--HHH-----HHHHHHcCccchHHHHHHHHHHhcchHH
Confidence 332210 1 111 112233322 234566777899998854
No 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.14 E-value=2.8e-09 Score=112.19 Aligned_cols=275 Identities=14% Similarity=0.135 Sum_probs=193.1
Q ss_pred cHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-------ChHHHHHHHHHHHH
Q 009665 72 SLPAMVAGVW---SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALTN 141 (529)
Q Consensus 72 ~l~~l~~~L~---s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-------~~~v~~~a~~~L~~ 141 (529)
++..+-..|. ++++.++.-|+..|.-+-.+.. .. ++..|...|.+++ .+.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4556666666 6678888888888888765532 11 4566777776543 26788899999999
Q ss_pred HhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHH
Q 009665 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (529)
Q Consensus 142 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 221 (529)
+..++... .+++.|...+...+..+++.|+.+||-+...... . .++..|+..+..+.+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHH
Confidence 87654321 2357788888777777888999999988533321 1 13566777665566778999999
Q ss_pred HHHhhhhcCCCCCchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc-CCCCcch
Q 009665 222 WTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSV 299 (529)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v 299 (529)
.+|..+..+. ...++.++..|. +.++.++..++.+++--..+..+. ..++.|+..+ .+.+..+
T Consensus 530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~V 594 (963)
T 4ady_A 530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDV 594 (963)
T ss_dssp HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHH
T ss_pred HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHH
Confidence 9999887665 345566666665 568888888888776433332221 2234444443 4567789
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009665 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (529)
Q Consensus 300 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~ 379 (529)
+..|+..||.+..++++ .++.++..|.+..++.+|..|+++|+.++.+++... ++..|..+..+
T Consensus 595 RraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~-------aid~L~~L~~D 658 (963)
T 4ady_A 595 RRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS-------AIDVLDPLTKD 658 (963)
T ss_dssp HHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH-------HHHHHHHHHTC
T ss_pred HHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH-------HHHHHHHHccC
Confidence 99999999999887652 345566655444499999999999999999765321 56677777888
Q ss_pred CChhHHHHHHHHHHHHhcCCC
Q 009665 380 AEFEIKKEAAWAISNATSGGS 400 (529)
Q Consensus 380 ~~~~v~~~a~~aL~nl~~~~~ 400 (529)
.+..|+..|+.+|+.+..+.+
T Consensus 659 ~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 659 PVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp SSHHHHHHHHHHHHHHSTTCC
T ss_pred CCHHHHHHHHHHHHHHhcCCc
Confidence 899999999999999987644
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.14 E-value=6.2e-09 Score=85.52 Aligned_cols=218 Identities=14% Similarity=0.182 Sum_probs=176.1
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCC
Q 009665 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234 (529)
Q Consensus 155 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 234 (529)
+..++..++.+|...-+.++.+|+..+.+++..-++..+- .+..|+.++..+...........++..++.-.|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 4457888999999888999999999999999887775444 356777888777788888888889998887653
Q ss_pred chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 009665 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (529)
Q Consensus 235 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 314 (529)
..+.+++|.+..-..-.|+.++.+..++|..++...+.... +++.-+..++.+++..-+..|+..++.+....
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 45578888888888889999999999999999987765544 56677889999988888888999998887655
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHH
Q 009665 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (529)
Q Consensus 315 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~n 394 (529)
.... ...+|.|..+|.+. +.-||..|+.+|.+++..++..+..+. .-+.-+++.+..+++....+|+.
T Consensus 176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 4333 25789999999998 999999999999999998888554333 33555777788899999999988
Q ss_pred HhcC
Q 009665 395 ATSG 398 (529)
Q Consensus 395 l~~~ 398 (529)
++.-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8653
No 67
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.12 E-value=1.6e-09 Score=114.28 Aligned_cols=216 Identities=16% Similarity=0.121 Sum_probs=155.9
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-Cchh
Q 009665 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGD-SPKC 191 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~ 191 (529)
.++| +++.|++++ +..|..|+++|++|+. ++..+..+...|+|..+ ..+|.+++.++|+.|+++|.||+.+ .+..
T Consensus 35 ~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 4555 557789988 9999999999999997 78888888888888765 4578889999999999999999954 4677
Q ss_pred HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~ 271 (529)
...+...|++++|..++.. . ...+..+........ ......+ .++...++.+|.+|+..
T Consensus 112 ~~~l~~~~il~~L~~~l~~-~--------~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~ 170 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKA-V--------LETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALA 170 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHH-H--------HHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHh-h--------HHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhC
Confidence 8889999999999999832 1 112222211110000 0001111 23445677788888887
Q ss_pred CchhHHHHHHhCcHHHHHHhcCCC---CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh--ccCCchhHHHHH
Q 009665 272 TNDKIQAVIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEA 346 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~L~~lL~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a 346 (529)
+++....+...+.++.|+.+|.+. ...++..|+.+|..++..++...+.+.+.+....+..++ ... +...+..+
T Consensus 171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la 249 (684)
T 4gmo_A 171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMA 249 (684)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHH
Confidence 777777788889999999988442 346899999999999999998888888766544333332 233 34567889
Q ss_pred HHHHHHHh
Q 009665 347 CWTISNIT 354 (529)
Q Consensus 347 ~~~L~nl~ 354 (529)
+++|.|+.
T Consensus 250 ~giL~Ni~ 257 (684)
T 4gmo_A 250 CGVLHNVF 257 (684)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHh
Confidence 99999975
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.02 E-value=1.1e-08 Score=87.93 Aligned_cols=226 Identities=17% Similarity=0.168 Sum_probs=171.6
Q ss_pred hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHH
Q 009665 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (529)
Q Consensus 240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 319 (529)
.+.+..|..++...|+.++..++.+|..+....++......-..+++.++.++.+.+..+...|++||+.+..+.+-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45778899999999999999999999999876544444444448899999999999999999999999999987653333
Q ss_pred HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 320 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
.+. .+...+..++.++ ++-++.+|+-.++-+--.++.- +++..+.+++.+.+.+++..+..++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 222 3567788888877 8889999999999884322111 25677888888889999999999999999854
Q ss_pred C-HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCC
Q 009665 400 S-NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHD 477 (529)
Q Consensus 400 ~-~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~ 477 (529)
. ++. -.+++.-+-.+|++.|+.++..++.++..++...-. .|..-.. .+......+|. -..
T Consensus 182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~---------~~~~~~~---~~~~~~v~~l~~~~~ 244 (265)
T 3b2a_A 182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL---------ENVKIEL---LKISRIVDGLVYREG 244 (265)
T ss_dssp SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC---------SCCHHHH---HHHHHHHHHGGGCSS
T ss_pred CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc---------HhHHHHH---HHHHHHHHHHHHhcC
Confidence 2 222 134677788899999999999999999999876321 1222222 23455667776 667
Q ss_pred CHHHHHHHHHHHHhh
Q 009665 478 NTEIYEKAVKILETY 492 (529)
Q Consensus 478 ~~~v~~~a~~il~~~ 492 (529)
.|.++.+|..+-+..
T Consensus 245 ~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 245 APIIRLKAKKVSDLI 259 (265)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 889999997766543
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.99 E-value=3.9e-08 Score=93.31 Aligned_cols=277 Identities=14% Similarity=0.066 Sum_probs=166.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+..+++.+.++|..++.-....+..+.... + +++ =++..|.+=+++++ +-+|-.|+++|++|.. ++...
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~----e~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-E----DVI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-S----CGG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-H----HHH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence 4677788999999999998888888766431 2 222 25678889999998 9999999999999997 44444
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
. +.+.+.+.|.+.++.||..|+.+...+....|+.. .+++..+-.++ .+.++.++.+++.++..++..+
T Consensus 139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 3 34778889999999999999999999998876532 25788888888 7778899999999999998753
Q ss_pred CCCchhhhhchHHHHHHhhccC---ChHHHHHHHHHHHHhccCC-chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009665 232 PQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (529)
Q Consensus 232 ~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L 307 (529)
...+..++..+... ++..+...++.+..++..+ +. ....+++.+..+|++.++.|...|++++
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 12344455544432 5666666666666665543 22 1236778888889999999999999999
Q ss_pred HHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHH
Q 009665 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387 (529)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~ 387 (529)
..+...... .. ..++..+..++.++ ++.+|-.|+..|..+....|...+. .-..+.+++.+++..+...
T Consensus 275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence 887552221 11 24567788888888 8999999999999998876665432 3445677788887777666
Q ss_pred HHHHHH
Q 009665 388 AAWAIS 393 (529)
Q Consensus 388 a~~aL~ 393 (529)
|+..|.
T Consensus 344 Aittll 349 (355)
T 3tjz_B 344 AITTLL 349 (355)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 655543
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.91 E-value=3.5e-07 Score=96.42 Aligned_cols=270 Identities=13% Similarity=0.131 Sum_probs=185.2
Q ss_pred ChHHHHHhhc---CCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 009665 115 VVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALGN 183 (529)
Q Consensus 115 ~i~~Li~lL~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~v~~~a~~~L~n 183 (529)
++..|-+.|. +++ +.++.-|+..|+-+..+... . ++..|...|.+++ +.++..|+..||-
T Consensus 393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~---~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR---D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH---H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH---H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566666665 444 88999999999999986542 1 3577777776544 6789899999999
Q ss_pred hhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh-ccCChHHHHHHH
Q 009665 184 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDAC 262 (529)
Q Consensus 184 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~ 262 (529)
+...+.. +. ++..|...+. +.+..+...++.+|..+..+... ..++..|+..+ .+.++.++..++
T Consensus 464 a~~GS~~--ee-----v~e~L~~~L~-dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSAN--IE-----VYEALKEVLY-NDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCC--HH-----HHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCC--HH-----HHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence 8644321 11 3566777773 33345556777777766444311 23444455443 355788999999
Q ss_pred HHHHHhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchh
Q 009665 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 341 (529)
Q Consensus 263 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 341 (529)
.+|+.+.-+..+. ++.+++.|. +.++.++..++.+++-...++... ..++.|+..+.+..+..
T Consensus 530 lgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 530 VGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred HHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence 9999887666543 345555553 567788888888887655544322 12444444443333788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009665 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 420 (529)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 420 (529)
+|..|+.+|+.++.++++ .++.++..+ .+.++.+|..|++||+.+..+.... .+++.|..++
T Consensus 594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~ 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence 999999999999887653 566677655 4569999999999999998653311 2466788888
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 009665 421 NCPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 421 ~~~~~~v~~~~l~aL~~l~~ 440 (529)
++.+..|+..++.+|+.+..
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHST
T ss_pred cCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999997753
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.90 E-value=3.4e-07 Score=75.33 Aligned_cols=217 Identities=17% Similarity=0.203 Sum_probs=167.1
Q ss_pred hhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q 009665 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP 189 (529)
Q Consensus 111 i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 189 (529)
++..++..++.+|.++- ..++..|+.++..++..-++....++ ..|+-+++ ++...+......++|.++...|
T Consensus 29 ~d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred hhHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 45568889999998887 89999999999999997777766554 55666654 4667777778899999997776
Q ss_pred hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009665 190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (529)
Q Consensus 190 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~ 269 (529)
+.-. +.++.+..-. .-.++.++.+..++|..+++..| ....+++.-+..++.++|..=+..++..++.+.
T Consensus 103 e~v~-----~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 103 ELVK-----SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp HHHH-----HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred HHHH-----hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 5322 2344454444 34589999999999999988753 344667778888999888877888888888887
Q ss_pred cCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHH
Q 009665 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 349 (529)
.+...... -.+|+|..+|.+.+.-++..|..+|++++..++..+..+ ...+.-+.+. +..+.+.....
T Consensus 173 en~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~-S~lv~~~V~eg 240 (253)
T 2db0_A 173 ENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDT-SSLVNKTVKEG 240 (253)
T ss_dssp TTTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCS-CHHHHHHHHHH
T ss_pred ccCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCc-HHHHHHHHHHH
Confidence 76544333 678999999999999999999999999999998766433 3356667777 77888888888
Q ss_pred HHHHhc
Q 009665 350 ISNITA 355 (529)
Q Consensus 350 L~nl~~ 355 (529)
|+.++.
T Consensus 241 L~rl~l 246 (253)
T 2db0_A 241 ISRLLL 246 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 72
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.90 E-value=6.2e-09 Score=109.72 Aligned_cols=197 Identities=14% Similarity=0.087 Sum_probs=148.3
Q ss_pred hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHH-HHhcCCCCcchHHHHHHHHHHhhcC-Chhh
Q 009665 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-VELLRHPSPSVLIPALRTVGNIVTG-DDMQ 317 (529)
Q Consensus 240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L-~~lL~~~~~~v~~~al~~L~~l~~~-~~~~ 317 (529)
..++| +++.|+++++..+..||++|++|+.. +.....+...+++..+ ..+|.+++..|+..|+++|+||+.. ....
T Consensus 34 ~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILP-VLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 34555 44668999999999999999999974 4455667777888765 5578899999999999999999864 3566
Q ss_pred HHHHHhcCChHHHHHHhccCC-------------c-------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Q 009665 318 TQCIINHQALPCLLDLLTQNY-------------K-------KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (529)
Q Consensus 318 ~~~~~~~~~l~~L~~lL~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l 377 (529)
+..++..++++.|..++.... . ..+...++++|.+++.++.+....+...+.++.|+..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 777889999999999885320 0 12344677888999988888888888888999999988
Q ss_pred hcC---ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH---HHHhccCCCCHHHHHHHHHHHHHHHH
Q 009665 378 LNA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK---PLCDLLNCPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 378 ~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~---~L~~lL~~~~~~v~~~~l~aL~~l~~ 440 (529)
.+. ..+++..|+.+|..++.. +++....+.+.+... .+..+.+..++ .+..+++.|.|++.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT 258 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence 653 457999999999999986 557777777766533 33333333333 35567788888864
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.80 E-value=2.8e-08 Score=90.76 Aligned_cols=187 Identities=14% Similarity=0.218 Sum_probs=144.2
Q ss_pred HHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHH
Q 009665 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (529)
Q Consensus 202 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 280 (529)
+.+...+ .+.+...+..++..|..++.+.+.........+++.|...+. +.+..++..++.++..++..-.......+
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466777 678899999999999999876322212223577888999995 88999999999999999965333333333
Q ss_pred HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHH
Q 009665 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVN 359 (529)
Q Consensus 281 ~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 359 (529)
. .+++.++..+.+.+..++..|..+|..++.... .. .+++.+...+.+. ++.+|..++..|+.+... .++
T Consensus 97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 3 688999999999999999999999999987543 11 3678889999988 999999999999997653 333
Q ss_pred H-HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665 360 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 360 ~-~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
. ....+. .++|.|..++.+.++++|..|..+++.++...
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 2 122233 48999999999999999999999999998643
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.80 E-value=8.4e-09 Score=94.20 Aligned_cols=189 Identities=16% Similarity=0.145 Sum_probs=142.5
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhhHHH
Q 009665 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQC 320 (529)
Q Consensus 242 ~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~ 320 (529)
+-+.+...+.+.+...+..++..|..++...+....... ..+++.|...+. +.+..++..|+.+++.++..-......
T Consensus 16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334577888899999999999999998865211110001 145777888884 889999999999999999643332222
Q ss_pred HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 009665 321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (529)
Q Consensus 321 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (529)
.. ..+++.++..+.+. +..+|..|+.+|.+++...+- ..+++.+...+.+.++.+|..++..|..++....
T Consensus 95 ~~-~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YA-SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HH-HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 22 25789999999988 899999999999999875321 1267888999999999999999999999765543
Q ss_pred HH--HHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 401 NE--QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 401 ~~--~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
++ ...++- .+++.|..++.+.+++++..+..++..+...-
T Consensus 166 ~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 166 PTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 32 123332 47899999999999999999999999887543
No 75
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.78 E-value=1.9e-06 Score=83.44 Aligned_cols=322 Identities=13% Similarity=0.122 Sum_probs=196.2
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCCh-HHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665 156 HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP---KCRDLVLSNGAL-MPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 156 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~i-~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
..++..++.+|.. ...++....+..+.-+..+++ .....+.+..-. ..+........+.-....++.++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 3566788888875 778899999988988887766 333333333222 11333222344555556666666666544
Q ss_pred CCCCchhhhhchHH--HHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHh--CcHHHHHHhcC----CC------
Q 009665 231 KPQPLFEQTRPALP--ALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLR----HP------ 295 (529)
Q Consensus 231 ~~~~~~~~~~~~l~--~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~L~~lL~----~~------ 295 (529)
.+. .......++. .+...|... +.+.+.-++.++..|...+.. ...+.+. ..++.++.++. +.
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 322 2333334444 445555542 345566677788877766543 3444433 24566654432 11
Q ss_pred -------CcchHHHHHHHHHHhhcCChhhHHHHHhcCCh--HHHHHHhccCCchhHHHHHHHHHHHHhcCCH----HHHH
Q 009665 296 -------SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL--PCLLDLLTQNYKKSIKKEACWTISNITAGNV----NQIQ 362 (529)
Q Consensus 296 -------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~ 362 (529)
...++..++.|++-++.. +.....+...++. +.|+.+++.....++-+-++.++.|+....+ ....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 134567889999988874 4455555555543 5666777765578899999999999998542 2233
Q ss_pred H-HHHcCCHHHHHHHHhcC---ChhHHHHHHHHHHHHhc---CC-----------------CH---------HHHHHHHH
Q 009665 363 A-IIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATS---GG-----------------SN---------EQIKFLVS 409 (529)
Q Consensus 363 ~-l~~~~~l~~L~~~l~~~---~~~v~~~a~~aL~nl~~---~~-----------------~~---------~~~~~l~~ 409 (529)
. ++..++ +.++..|... |+++....-.....+-. .- +| ++...|.+
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 2 333444 4566666653 76766543333222211 00 11 11112222
Q ss_pred c--CChHHHHhccCC----------CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCC
Q 009665 410 Q--GCIKPLCDLLNC----------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD 477 (529)
Q Consensus 410 ~--~~l~~L~~lL~~----------~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~ 477 (529)
+ .+++.|+.+|++ .|+.+...++.=|+.+++..+. .+..+++.|+-+.+-.|+.|+
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~------------gr~i~~~lg~K~~VM~Lm~h~ 459 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE------------SIDVLDKTGGKADIMELLNHS 459 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT------------HHHHHHHHSHHHHHHHHTSCS
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc------------hhHHHHHcCcHHHHHHHhcCC
Confidence 2 237888888873 3677888889889988887653 267888999999999999999
Q ss_pred CHHHHHHHHHHHHhhC
Q 009665 478 NTEIYEKAVKILETYW 493 (529)
Q Consensus 478 ~~~v~~~a~~il~~~~ 493 (529)
|++|+..|...++++.
T Consensus 460 d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 460 DSRVKYEALKATQAII 475 (480)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998888763
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.72 E-value=9e-08 Score=90.79 Aligned_cols=243 Identities=14% Similarity=0.091 Sum_probs=138.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
-....+.+.++++++-++-.|++.+.++...+ -.+ .+.+.+.+.|.+.+ |-++..|+.+...+....|+..
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~---m~~-----~l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v 174 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDST---MLQ-----AIERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVV 174 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT---THH-----HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH---HHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHH
Confidence 35788888999999999999999999987432 122 35677888999998 9999999999999998777753
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch--hHHHHHHHHHHHhhhh
Q 009665 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFC 228 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~ 228 (529)
. +.++.+..++.+.++-++.+|+.+|..+...+.. .+..++..+.... ++-.+...+..+..++
T Consensus 175 ~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~ 240 (355)
T 3tjz_B 175 K-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQL 240 (355)
T ss_dssp H-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-
T ss_pred H-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhc
Confidence 2 5789999999999999999999999999865431 2344555553321 3333334444444444
Q ss_pred cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009665 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (529)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~ 308 (529)
... ........++.+...|++.++.|...|+.++..+...+.. .. ..++..|..++.++++.++..|++.|.
T Consensus 241 ~~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~ 312 (355)
T 3tjz_B 241 EDE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLN 312 (355)
T ss_dssp -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred ccc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 432 0123356777888888999999999999999998663322 11 244566777888899999999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (529)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 350 (529)
.++...+...+ ..-.-+..++.++ +..+.-.|.-+|
T Consensus 313 ~l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittl 348 (355)
T 3tjz_B 313 KVAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTL 348 (355)
T ss_dssp ------------------------------------------
T ss_pred HHHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHh
Confidence 99987765443 2334577788777 766655554443
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.69 E-value=3e-07 Score=79.17 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=146.4
Q ss_pred CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC---CHH
Q 009665 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVN 359 (529)
Q Consensus 283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~ 359 (529)
+.+..|..+|.+.++.++..++.+|..+...-+.......-..+++.++.++.+. +..+...|..++..+..+ +++
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHH
Confidence 5678899999999999999999999999986444444444347899999999998 999999999999999985 344
Q ss_pred HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 360 ~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~ 439 (529)
+... +...|.+++.+++.-++.+|+..++.+-.... . .+++..+.+++++.|++++.+++.++.++.
T Consensus 112 ~y~K-----l~~aL~dlik~~~~il~~eaae~Lgklkv~~~---~-----~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 112 TFLK-----AAKTLVSLLESPDDMMRIETIDVLSKLQPLED---S-----KLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC---C-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc---h-----HHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 4332 45678889999999999999999999933221 1 135677888899999999999999999998
Q ss_pred HhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009665 440 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 496 (529)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 496 (529)
........ + .+.++-+..+..++++.+.++|..+++..++..
T Consensus 179 ~~S~D~~i---------~------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 179 NSSADSGH---------L------TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp GGCSSCCC---------G------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cccCCHHH---------H------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 76543211 1 233455788899999999999999999999864
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.60 E-value=7e-06 Score=87.77 Aligned_cols=304 Identities=13% Similarity=0.162 Sum_probs=215.1
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC---
Q 009665 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--- 146 (529)
Q Consensus 70 ~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~--- 146 (529)
...+..+++.+...+...+..++..+..++...... ..+..+++..|.+.+.+.. .. +.|+.++..++...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~ 86 (986)
T 2iw3_A 13 IKVLEELFQKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLS 86 (986)
T ss_dssp HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCC
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCC
Confidence 345666777777655666678888888887643111 1122367888888888765 33 88999999999533
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (529)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 226 (529)
+..--.++ +.+|.++..+.+....++..|..++..++..-+... + ..+++.|+..+........+..++.++..
T Consensus 87 ~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~ 160 (986)
T 2iw3_A 87 PSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSA 160 (986)
T ss_dssp TTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 12222333 678999999988888999998888888774332211 1 23588888888545568889999999999
Q ss_pred hhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC-CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHH
Q 009665 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (529)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~ 305 (529)
|+...+......+..++|.+...+.+..++|...+..++..+|.. .+.-+. ..+|.|+..+.+++. ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~ 233 (986)
T 2iw3_A 161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVH 233 (986)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHH
T ss_pred HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHH
Confidence 998654444455688999999999999999999988888887742 112222 678999999988753 555666
Q ss_pred HHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcC-Ch
Q 009665 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNA-EF 382 (529)
Q Consensus 306 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l~~~-~~ 382 (529)
.|+.-+.-.... ...+. =..|.|..-|... ...+++.++-++.|+|. .+|.....++.. ++|.|-...+.- +|
T Consensus 234 ~l~~~tfv~~v~-~~~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~p 309 (986)
T 2iw3_A 234 LLGATTFVAEVT-PATLS-IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIADP 309 (986)
T ss_dssp HHTTCCCCSCCC-HHHHH-HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCSH
T ss_pred HhhcCeeEeeec-chhHH-HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCCH
Confidence 666544322211 11111 2457777888777 77889999999999998 567777776654 888888877764 99
Q ss_pred hHHHHHHHHHHHHh
Q 009665 383 EIKKEAAWAISNAT 396 (529)
Q Consensus 383 ~v~~~a~~aL~nl~ 396 (529)
++|..|..|+..+.
T Consensus 310 e~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 310 EAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888888774
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.9e-07 Score=83.91 Aligned_cols=193 Identities=11% Similarity=0.120 Sum_probs=141.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCCchhHHHHHh-cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC-CCch-
Q 009665 161 IFVRLLSSPTDDVREQAVWALGN-VAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLF- 236 (529)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~- 236 (529)
.+...+.+.++.-|..++..|.. ++...+.......+ ..++..|...+..+.+..++..++.++..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667788999999999999999 87443322100000 12355666666556788899999999999997543 3333
Q ss_pred hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHH-HHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009665 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV-IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (529)
Q Consensus 237 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 315 (529)
.+...++|.++..+.+..+.|+..+..++..++...+.....- .+ .+++.|+..|.+.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 5667899999999999899999998888888876432110000 11 367788899999999999999999999997554
Q ss_pred h---hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665 316 M---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 316 ~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
. .....+...++|.+..++.++ ++.+|..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 2 222334247999999999998 99999999999999875
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.58 E-value=5.8e-07 Score=81.89 Aligned_cols=191 Identities=10% Similarity=0.085 Sum_probs=140.3
Q ss_pred HHHHhccchhHHHHHHHHHHHhh-hhcCCCCCc--hhhhhchHHHHHHhh-ccCChHHHHHHHHHHHHhccCCc-hhHH-
Q 009665 204 LLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL--FEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ- 277 (529)
Q Consensus 204 l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~L~~l~~~~~-~~~~- 277 (529)
+...+ .+.+..-+..++..|.. ++.+.+... ......++..|.+.+ .+.+..++..++.+|+.++.+-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44555 67788889999999999 876543322 222346788888999 68899999999999999985432 2222
Q ss_pred HHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 009665 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (529)
Q Consensus 278 ~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 357 (529)
.... .+++.++..+.+....++..+..++-.++...+.......-..+++.|...|.+. ++.+|..++.+|+.++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 2222 4789999999998899999988888888874421110000013577888899998 8999999999999988743
Q ss_pred H---HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665 358 V---NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 358 ~---~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
+ ......+...++|.|..++.+.+..||..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3 444444424599999999999999999999999999875
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.56 E-value=1.2e-08 Score=83.19 Aligned_cols=120 Identities=17% Similarity=0.165 Sum_probs=92.2
Q ss_pred hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 009665 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (529)
Q Consensus 282 ~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 361 (529)
...++.+..+|.++++.++..|+++|+.+.. . .++.|..+|.++ ++.+|..|+|+|+++.. +.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~-- 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER-- 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence 3667889999999999999999999987643 1 258889999988 99999999999999863 22
Q ss_pred HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHH
Q 009665 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 437 (529)
Q Consensus 362 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~ 437 (529)
.++.|+..+.++++.||..|+++|+++.. + ..++.|..+++++++.|+..+..+|..
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 47888999999999999999999999852 2 246778888999999999999988864
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.46 E-value=6.2e-05 Score=82.88 Aligned_cols=343 Identities=10% Similarity=0.071 Sum_probs=198.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC------hh
Q 009665 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT------SE 148 (529)
Q Consensus 75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~------~~ 148 (529)
.++..+.+.+..++...+.++..++..+ -+ .. -.++++.|++.+++++ +..+..++.+|..++... ++
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d-~p--~~--Wp~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~ 162 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSD-FP--DR--WPTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE 162 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHH-ST--TT--CTTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhh-Cc--cc--hhHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 4555566566889999999999988643 11 11 1468899999998877 788999999999998722 12
Q ss_pred hHHHH---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhC-CCchh-HHHHHhcCChHHHHHH
Q 009665 149 NTRVV---IDHGAVPIFVR-------LLSSPTD---------DVREQAVWALGNVAG-DSPKC-RDLVLSNGALMPLLAQ 207 (529)
Q Consensus 149 ~~~~~---~~~g~i~~L~~-------lL~~~~~---------~v~~~a~~~L~nl~~-~~~~~-~~~~~~~~~i~~l~~~ 207 (529)
.+..+ +. ...+.++. .+..+.. ++...++.+++++.. +.+.. .+.+ ...++.+...
T Consensus 163 ~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~ 239 (960)
T 1wa5_C 163 LFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHH
Confidence 22211 11 12333333 2444211 233446666666642 22221 1111 1123334444
Q ss_pred hccc-----hh---------HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-----cCChHHHHHHHHHHHHh
Q 009665 208 FNEH-----AK---------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----SNDDEVLTDACWALSYL 268 (529)
Q Consensus 208 l~~~-----~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-----~~d~~v~~~a~~~L~~l 268 (529)
+... .+ ..++..++.++..+....+..-......+++.+...+. ..++.++..++..+..+
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 4220 11 24667778888877754422222334556666666664 34678899999999888
Q ss_pred ccCCchh--HH--HHHHhCcH-HHHHHhcC-----------------------CCCcchHHHHHHHHHHhhcCChhhHHH
Q 009665 269 SDGTNDK--IQ--AVIEAGVC-PRLVELLR-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQC 320 (529)
Q Consensus 269 ~~~~~~~--~~--~~~~~~~~-~~L~~lL~-----------------------~~~~~v~~~al~~L~~l~~~~~~~~~~ 320 (529)
+...... .. .++. .++ +.++..+. +.....+..|..+|..++......
T Consensus 320 ~~~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~--- 395 (960)
T 1wa5_C 320 TRIPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL--- 395 (960)
T ss_dssp HTSHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---
T ss_pred hCcHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---
Confidence 7543211 00 1111 122 22222221 112256778888888888754421
Q ss_pred HHhcCChHHHHHHhc------cCCchhHHHHHHHHHHHHhcCC--HH----------HHHHHHHcCCHHHHHHHHhcC--
Q 009665 321 IINHQALPCLLDLLT------QNYKKSIKKEACWTISNITAGN--VN----------QIQAIIEAGIIGPLVNLLLNA-- 380 (529)
Q Consensus 321 ~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~--~~----------~~~~l~~~~~l~~L~~~l~~~-- 380 (529)
++. .+++.+...+. +. ++..|..|..+++.++.+. .. ....++..-++| .+.++
T Consensus 396 v~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~ 469 (960)
T 1wa5_C 396 VTN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNI 469 (960)
T ss_dssp HHH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSC
T ss_pred HHH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCC
Confidence 211 24455555565 44 7789999999999997531 10 122222211333 34555
Q ss_pred -ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665 381 -EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 381 -~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
++.+|..|+|+++.++..-.++... .+++.++..|.++++.|+..++.+|.+++..
T Consensus 470 ~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 470 PHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp SCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 8899999999999998865544333 2577888888888899999999999999864
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.46 E-value=3.1e-08 Score=80.85 Aligned_cols=121 Identities=18% Similarity=0.187 Sum_probs=93.0
Q ss_pred cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009665 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (529)
Q Consensus 113 ~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (529)
...++.|+.+|++++ +.+|..|+++|+.+.. + .++.|+.+|.++++.+|..++++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 456788999999888 8999999999887653 1 26889999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHh
Q 009665 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (529)
Q Consensus 193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l 268 (529)
..++.|+..+ .+.++.++..++|+|..+.. ...++.|..++.++++.|+..++++|..|
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2478888888 77889999999999998752 35788999999999999999999988653
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.44 E-value=1.2e-05 Score=85.96 Aligned_cols=299 Identities=15% Similarity=0.139 Sum_probs=204.5
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC--CCCchhhh
Q 009665 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQT 239 (529)
Q Consensus 162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~ 239 (529)
+.+.+...+..-+..+...+.++.......+ ....+++..+.+.+....+. ..|+.++..+|... ......+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence 4444444222333455666666654221111 11124566777777433344 88999999999665 23344555
Q ss_pred hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-CcchHHHHHHHHHHhhcCChhhH
Q 009665 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQT 318 (529)
Q Consensus 240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~ 318 (529)
-+.+|.++..+.+....|+..|-.++..+...-+... + ..++|.|+..|.+. .+..+..|+.+++.++...+.+.
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 6788999999988889999998888887775433221 1 35788899988654 68999999999999997666555
Q ss_pred HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009665 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (529)
Q Consensus 319 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (529)
...+. .++|.+...+.+. .++|++.|..++..+|. ++.+. ..++|.|+..+.+++. ..+++..|+.-+
T Consensus 170 ~~~~~-~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~t 239 (986)
T 2iw3_A 170 ALRMP-ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGATT 239 (986)
T ss_dssp HHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTCC
T ss_pred HHhcc-chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcCe
Confidence 44443 6889999999888 99999999999999987 44442 2479999999987742 455666666655
Q ss_pred cCCC--HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHH-
Q 009665 397 SGGS--NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL- 473 (529)
Q Consensus 397 ~~~~--~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L- 473 (529)
...+ ...... ++|.|.+-|....+.+.+.+.-++.|+++.-+.... ...++- ..++.++..
T Consensus 240 fv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~---------~~~f~~--~l~p~~~~~~ 303 (986)
T 2iw3_A 240 FVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV---------IAPFLG--KLLPGLKSNF 303 (986)
T ss_dssp CCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH---------HHHHHT--TTHHHHHHHT
T ss_pred eEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH---------Hhhhhh--hhhhHHHHHh
Confidence 4432 222222 477888888889999999999999999987654332 233332 236666664
Q ss_pred hcCCCHHHHHHHHHHHHhhCCC
Q 009665 474 QSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 474 ~~~~~~~v~~~a~~il~~~~~~ 495 (529)
....+||+++.|.+.++.+...
T Consensus 304 ~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 304 ATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHh
Confidence 6779999998888888777543
No 85
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.40 E-value=5.4e-05 Score=83.59 Aligned_cols=395 Identities=11% Similarity=0.075 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHh-------hcCCCC--hHHHHHHHHHHHHHhcCChhhH---
Q 009665 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRDDF--PQLQFEAAWALTNIASGTSENT--- 150 (529)
Q Consensus 83 ~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~l-------L~~~~~--~~v~~~a~~~L~~l~~~~~~~~--- 150 (529)
+++..+..|+.++..+++..........+. .++|.++.+ +...+. .+.....+.++..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999987531111111111 233444332 233331 2666777777777764222211
Q ss_pred ---------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------CchhHHHHHh--cCChHHHH
Q 009665 151 ---------RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD---------SPKCRDLVLS--NGALMPLL 205 (529)
Q Consensus 151 ---------~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~---------~~~~~~~~~~--~~~i~~l~ 205 (529)
..+ ..+++.++.+... .++++...+++.+..++.. .+.....+.. ...++.++
T Consensus 335 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 111 1345566665533 4778999999998887631 1111111111 12334444
Q ss_pred HHhccchh--------------HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc-----CChHHHHHHHHHHH
Q 009665 206 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDDEVLTDACWALS 266 (529)
Q Consensus 206 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----~d~~v~~~a~~~L~ 266 (529)
..+....+ ...++.+..++..++...+ ......+++.+...+.+ .+...++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44421111 1345566667766665433 22333444555555543 56778999999999
Q ss_pred HhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHH
Q 009665 267 YLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (529)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 345 (529)
.++..........+. .+++.+..+.. +.++.++..+++++|.++..-..... .+ ..+++.|+..| + +.++..
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l-~---~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAINLLVRGL-N---SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHHHHHHH-H---SSCHHH
T ss_pred HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHHHHHHHh-C---hHHHHH
Confidence 998765433221111 23332222221 34788999999999998863221111 11 13456666666 2 578999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCC-HHHHHHHHH--cCChHHHHhcc
Q 009665 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVS--QGCIKPLCDLL 420 (529)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~--~~~l~~L~~lL 420 (529)
|++++.+++..........++ .++..+..++..+ +.+.+..+..+++.++.... .+...++.. ..++..+..++
T Consensus 563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 641 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC 641 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999755554444443 3777777888874 57889999999999986432 233333322 12233333444
Q ss_pred CCC--CHHHHH---HHHHHHHHHHHhhhhh-hhcCCCC-ccchHHHHHHhhchHHHHHHHhc--CCCHHHHHHHHHHHHh
Q 009665 421 NCP--DPRIVT---VCLEGLENILKAGEAE-KNMGNTG-GVNLFAQAIDDAEGLEKIENLQS--HDNTEIYEKAVKILET 491 (529)
Q Consensus 421 ~~~--~~~v~~---~~l~aL~~l~~~~~~~-~~~~~~~-~~~~~~~~i~~~g~~~~l~~L~~--~~~~~v~~~a~~il~~ 491 (529)
+.. +.+... .++..|..++..-... ....+.. ...++...+. ..++.+..+.. ..+.++.+.+..++..
T Consensus 642 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~e~~~~~~~~ 719 (971)
T 2x1g_F 642 QADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPIFKRIAEMWVEEIDVLEAACSAMKH 719 (971)
T ss_dssp TC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 433 332233 3444444444422110 0000000 0111223332 23555555532 2467899998888887
Q ss_pred hC
Q 009665 492 YW 493 (529)
Q Consensus 492 ~~ 493 (529)
..
T Consensus 720 ~~ 721 (971)
T 2x1g_F 720 AI 721 (971)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 86
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.38 E-value=2.8e-05 Score=85.83 Aligned_cols=329 Identities=12% Similarity=0.026 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhc----------------CCCChHHHHHHHHHHHHHhcCCh-h
Q 009665 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS----------------RDDFPQLQFEAAWALTNIASGTS-E 148 (529)
Q Consensus 86 ~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~----------------~~~~~~v~~~a~~~L~~l~~~~~-~ 148 (529)
.++..++.++...+... .-+.. ....+++.+.. |. .++ ++++..|+.++..+....+ .
T Consensus 204 ~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~~ 278 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDCH 278 (971)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGGG
T ss_pred hHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCcccc
Confidence 67778888887766521 01122 33456676666 41 123 7899999999999997422 1
Q ss_pred hHHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhhCCCchhHHHHH---------hc----CChHHHH
Q 009665 149 NTRVVIDHGAVPIFVR-------LLSSPT---DDVREQAVWALGNVAGDSPKCRDLVL---------SN----GALMPLL 205 (529)
Q Consensus 149 ~~~~~~~~g~i~~L~~-------lL~~~~---~~v~~~a~~~L~nl~~~~~~~~~~~~---------~~----~~i~~l~ 205 (529)
.....+. .+++.++. .+...+ .+.....+..+..++..... .+. .. ..++.++
T Consensus 279 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~ll 354 (971)
T 2x1g_F 279 NYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHST---LLLSGITSADPELSILVHRIVQEIL 354 (971)
T ss_dssp GCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHH---HHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH---HHHHHhccCcccccHHHHHHHHHHH
Confidence 1111111 12333333 223334 26666667776666532211 111 01 1233344
Q ss_pred HHhcc----chhHHHHHHHHHHHhhhhcC--------CCCCch----hhhhchHHHHHHhhccCCh--------------
Q 009665 206 AQFNE----HAKLSMLRNATWTLSNFCRG--------KPQPLF----EQTRPALPALERLIHSNDD-------------- 255 (529)
Q Consensus 206 ~~l~~----~~~~~~~~~a~~~L~~l~~~--------~~~~~~----~~~~~~l~~L~~ll~~~d~-------------- 255 (529)
..... ..+..+...+++.+..++.. ...... .....+++.++..+..++.
T Consensus 355 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f 434 (971)
T 2x1g_F 355 HCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECF 434 (971)
T ss_dssp HHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHH
T ss_pred HHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHH
Confidence 43311 24677888888888877651 111111 2234455555555532211
Q ss_pred -HHHHHHHHHHHHhccCCc-hhHHHHHHhCcHHHHHHhcCC-----CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChH
Q 009665 256 -EVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328 (529)
Q Consensus 256 -~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 328 (529)
..+..+..++..++.... ..... +++.+...+.+ .++..+..++.+++.++.+...... ..++
T Consensus 435 ~~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~ 504 (971)
T 2x1g_F 435 RCYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIP 504 (971)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHH
Confidence 245666666766664433 12121 22233333332 5778899999999999887553322 2233
Q ss_pred HHHHHh---c--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHH
Q 009665 329 CLLDLL---T--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403 (529)
Q Consensus 329 ~L~~lL---~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~ 403 (529)
.++.++ . ++ ++.+|..++|+++.++.--......+- .+++.|+..+. +.++..|++++.+++.......
T Consensus 505 ~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l 578 (971)
T 2x1g_F 505 RLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGLN---SSMSAQATLGLKELCRDCQLQL 578 (971)
T ss_dssp HHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhc
Confidence 333333 2 33 788999999999998862011111111 25666777772 7899999999999997655444
Q ss_pred HHHHHHcCChHHHHhccCC--CCHHHHHHHHHHHHHHHHh
Q 009665 404 IKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 404 ~~~l~~~~~l~~L~~lL~~--~~~~v~~~~l~aL~~l~~~ 441 (529)
..++ ..++..|..++.. .+.+.+..+.+++..++..
T Consensus 579 ~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 579 KPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred cccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 4443 2367777777776 4578888999999999864
No 87
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.35 E-value=0.00021 Score=69.39 Aligned_cols=324 Identities=13% Similarity=0.106 Sum_probs=191.4
Q ss_pred cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh---hhHHHHHhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHhhCC
Q 009665 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS---ENTRVVIDHGAV-PIFVR-LLSSPTDDVREQAVWALGNVAGD 187 (529)
Q Consensus 113 ~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i-~~L~~-lL~~~~~~v~~~a~~~L~nl~~~ 187 (529)
...+..++++|.....+++....+..+..+...++ .....+.+..-. ..+.. ++..++.-....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 35677888988866558888888888888888666 444444443322 22333 33434444556666665666533
Q ss_pred CchhHHHHHhcCChH--HHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhh--hhchHHHHHHhhcc-----------
Q 009665 188 SPKCRDLVLSNGALM--PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHS----------- 252 (529)
Q Consensus 188 ~~~~~~~~~~~~~i~--~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~----------- 252 (529)
.+...+.+. ..+. .++..|....+......++.+|..|.+.+..+.... ....+|.++.++..
T Consensus 156 ~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 322111110 1122 344455322223335567888888877653332221 12345655543331
Q ss_pred ----C--ChHHHHHHHHHHHHhccCCchhHHHHHHhCcH--HHHHHhcCC-CCcchHHHHHHHHHHhhcCCh----hhHH
Q 009665 253 ----N--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVC--PRLVELLRH-PSPSVLIPALRTVGNIVTGDD----MQTQ 319 (529)
Q Consensus 253 ----~--d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~----~~~~ 319 (529)
+ ..+++..++.++.-++-.+. ....+...++. +.|+.+++. ..+.+.+-++.++.|+..... ....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1 25578889999988887654 44555555543 566666654 568899999999999998652 1112
Q ss_pred -HHHhcCChHHHHHHhccCC--chhHHHHHHHHHHHHhc---------------------CCHHHHH-H--------HHH
Q 009665 320 -CIINHQALPCLLDLLTQNY--KKSIKKEACWTISNITA---------------------GNVNQIQ-A--------IIE 366 (529)
Q Consensus 320 -~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~---------------------~~~~~~~-~--------l~~ 366 (529)
.++..++++ ++..|.... |+++....-.....+.. =+|-+.. . +-+
T Consensus 313 ~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 233334544 555553321 44444332222211111 0111111 1 111
Q ss_pred c--CCHHHHHHHHhc----------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHH
Q 009665 367 A--GIIGPLVNLLLN----------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 434 (529)
Q Consensus 367 ~--~~l~~L~~~l~~----------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~a 434 (529)
. .++..|+++|.+ .|+.+..-||.=|+.++.+. |.....+-+-|+-..++.++.++|++|+..|+.|
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 247889999973 36778888999999999874 4666666677999999999999999999999999
Q ss_pred HHHHHHh
Q 009665 435 LENILKA 441 (529)
Q Consensus 435 L~~l~~~ 441 (529)
+..++..
T Consensus 471 vQklm~~ 477 (480)
T 1ho8_A 471 TQAIIGY 477 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988754
No 88
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.34 E-value=0.00013 Score=79.86 Aligned_cols=339 Identities=12% Similarity=0.098 Sum_probs=184.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHH-HhhcCCCChHHHHHHHHHHHHHhcCC---h--hhHHHHHh
Q 009665 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGT---S--ENTRVVID 155 (529)
Q Consensus 82 s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li-~lL~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~~~~ 155 (529)
+.++.+...++.++...++ --+...+++.++++.++ .+|. + ++++..|+.||..+.... + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 4566777788888888875 24566778889999999 8885 3 789999999999998722 2 11111110
Q ss_pred --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhCC-------CchhHHHHHhcCChHHHHHHhccch
Q 009665 156 --HGAVPIF--------------VRLLSSPTDDVREQAVWALGNVAGD-------SPKCRDLVLSNGALMPLLAQFNEHA 212 (529)
Q Consensus 156 --~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~~-------~~~~~~~~~~~~~i~~l~~~l~~~~ 212 (529)
.+.++.+ .......+.+.....+..+..+... .+..+..+. .++..++..- ...
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 1111223456666666666555421 111111111 0122333322 334
Q ss_pred hHHHHHHHHHHHhhhhcCC--CCCchhh----hhchHHHHHHhhccCC--------------------hH-HHH-HHHHH
Q 009665 213 KLSMLRNATWTLSNFCRGK--PQPLFEQ----TRPALPALERLIHSND--------------------DE-VLT-DACWA 264 (529)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~--~~~~~~~----~~~~l~~L~~ll~~~d--------------------~~-v~~-~a~~~ 264 (529)
+.++...++..-..++..- ....... ...+++.++.-+.-++ ++ ... ..-.+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 6666666665544454321 1111222 2344445554444221 00 111 01122
Q ss_pred HHHhccCCc-hhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhcc-----
Q 009665 265 LSYLSDGTN-DKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----- 336 (529)
Q Consensus 265 L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----- 336 (529)
|.+++.-.. +... -+++.+...+.+ .++..+..+++++|.++.+-......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 333322111 1111 123444444443 578899999999999998765432222222577888888764
Q ss_pred CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHH--------
Q 009665 337 NYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK-------- 405 (529)
Q Consensus 337 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~-------- 405 (529)
+ ...++..++|++|.++. ..++.... ++..|+..+..+++.++..||+++.+++..+......
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 3 45577789999998876 23443222 4556777777777899999999999999854422210
Q ss_pred HHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 406 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 406 ~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
++ ..++..+...+..-++.-+..+.+++..++...
T Consensus 586 ~~--~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 586 FI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred hH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 11 112334444444556666677778888877654
No 89
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.33 E-value=7e-05 Score=81.99 Aligned_cols=315 Identities=10% Similarity=0.122 Sum_probs=180.4
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC---c-
Q 009665 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS---P- 189 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~---~- 189 (529)
+++.+..+|..+.++++...++.++.....- -....+++.+.++.++ .++. +++++..|+.+|..+.... +
T Consensus 195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 195 IFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence 3444445554444478888899999998872 2245677889999999 8884 6789999999999998622 2
Q ss_pred -hhHHHHHh--cCChHHH-----------HHHhc--cchhHHHHHHHHHHHhhhhcCCC-----CCc-hhhhhchHHHHH
Q 009665 190 -KCRDLVLS--NGALMPL-----------LAQFN--EHAKLSMLRNATWTLSNFCRGKP-----QPL-FEQTRPALPALE 247 (529)
Q Consensus 190 -~~~~~~~~--~~~i~~l-----------~~~l~--~~~~~~~~~~a~~~L~~l~~~~~-----~~~-~~~~~~~l~~L~ 247 (529)
.+.+.+.. .+.+..+ -..+. ...+.+.....+..+..+..... .+. ......++..|+
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 12211111 0011111 11111 23356777777777765554321 011 122233344666
Q ss_pred HhhccCChHHHHHHHHHHHHhccC--C----chhHHHHHHhCcHHHHHHhcCCCC---------cch---------HHHH
Q 009665 248 RLIHSNDDEVLTDACWALSYLSDG--T----NDKIQAVIEAGVCPRLVELLRHPS---------PSV---------LIPA 303 (529)
Q Consensus 248 ~ll~~~d~~v~~~a~~~L~~l~~~--~----~~~~~~~~~~~~~~~L~~lL~~~~---------~~v---------~~~a 303 (529)
.+-..+|.++...++.....++.. . ......+.. .+++.++.-+..+. ... ....
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~ 429 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence 666677888888888877777641 0 111121221 34555555554433 000 0011
Q ss_pred H----HHHHHhhcCChhhHHHHHhcCChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHH
Q 009665 304 L----RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLL 377 (529)
Q Consensus 304 l----~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~l~~L~~~l 377 (529)
. .+|..++.-.... ++. -.++.+...+.+ ..++..++.++|+++.++.+.. +....++.. +++.|+.++
T Consensus 430 f~~~Rd~L~~l~~l~~~~---~~~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~-vi~~Ll~l~ 504 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT-VIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHH---HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHH-HHHHHHHhh
Confidence 1 2222222111111 000 123334444443 2379999999999999998633 323333332 788888888
Q ss_pred hc-----CChhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009665 378 LN-----AEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 444 (529)
Q Consensus 378 ~~-----~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~ 444 (529)
.. ....++..++|+++.++..- .++..+ .++..|...+..+++.+...|+++|.+|+..+..
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 64 23456678889999887532 233322 2567788888888899999999999999986543
No 90
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.29 E-value=1.7e-05 Score=87.33 Aligned_cols=338 Identities=9% Similarity=0.045 Sum_probs=178.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCC--CChhhHH-hhcCChHH----HHHhhcCC---CChHHHHHHHHHHHHHhcCChhhHH
Q 009665 82 SDDRNIQLDATTQFRKLLSIER--SPPINEV-IQSGVVPR----FIEFLSRD---DFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 82 s~~~~~~~~a~~~l~~lls~~~--~~~~~~~-i~~g~i~~----Li~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
+.+...+..|+.++..++.... ..+.... ....+.+. ++..|.++ + +-+|..|+|+++.++..-+ ..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~-p~vr~~a~~~lg~~~~~~~--~~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPH-IILRVDAIKYIYTFRNQLT--KA 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSC-HHHHHHHHHHHHHTGGGSC--HH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCC-ceehHHHHHHHHHHHhhCC--HH
Confidence 5667788889999999875321 1011100 00012222 33344555 5 8999999999999987421 11
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chh-HHHHHh--cCChHHHHHHhccc----hhHHHH
Q 009665 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-------PKC-RDLVLS--NGALMPLLAQFNEH----AKLSML 217 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~-~~~~~~--~~~i~~l~~~l~~~----~~~~~~ 217 (529)
. -..+++.++..|.+++..|+..|+++|.+++... +.+ +..+.. ..++..|+.++... ......
T Consensus 493 ~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 493 Q--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN 570 (960)
T ss_dssp H--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred H--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccccc
Confidence 1 1245788888888888999999999999998631 111 222211 11334444455332 111122
Q ss_pred HHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc----c-CChHHHHHHHHHHHHhccC-CchhHHHHHHhCcHHHHHHh
Q 009665 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----S-NDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVEL 291 (529)
Q Consensus 218 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----~-~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~l 291 (529)
..+..++..++.........+...+++.|...+. + .++.....++.+|+.++.. .++... -+...+++.+...
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~i 649 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHH
Confidence 3455555554432222222234455555555543 2 3567777889999988865 323333 3344678888888
Q ss_pred cCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHH--HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009665 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL--DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369 (529)
Q Consensus 292 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~--~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 369 (529)
|......+...++.+++.+..........+ ..+++.+. ..+... ......+.+|.++....++.+.. ++ .+
T Consensus 650 L~~~~~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~~l~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~-~~-~~ 722 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVVEQSATIPESI--KPLAQPLLAPNVWELK---GNIPAVTRLLKSFIKTDSSIFPD-LV-PV 722 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHCSSCCTTT--GGGHHHHTSGGGGCCT---TTHHHHHHHHHHHHHHHGGGCSC-SH-HH
T ss_pred HHhhhHhhHHHHHHHHHHHHHhccCCCHHH--HHHHHHHcCHHHhcCC---CCchhHHHHHHHHHHhChHHHHH-HH-HH
Confidence 877767788888888888775331111000 01233333 333322 13334555555554321110000 00 01
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHH-HHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHH
Q 009665 370 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLE 436 (529)
Q Consensus 370 l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~ 436 (529)
+..+..++.+... ...|+++++.++...... ...++- .+++.++..+... .++++...+..+.
T Consensus 723 l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~--~i~~~l~~~l~~~~~~~~~~~~l~~~~ 787 (960)
T 1wa5_C 723 LGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIK--QIAVLLLQRLQNSKTERYVKKLTVFFG 787 (960)
T ss_dssp HHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHH--HHHHHHHHGGGSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHH--HHHHHHHHHHhhCCcHhHHHHHHHHHH
Confidence 2223333444432 378999999988765555 444442 2566666666654 3455534443333
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.29 E-value=0.00049 Score=76.46 Aligned_cols=356 Identities=10% Similarity=0.131 Sum_probs=191.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhc---CCCCC--hh-------hHHhh--cCChHHHHHhhcCCCChHHHHHHHH
Q 009665 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLS---IERSP--PI-------NEVIQ--SGVVPRFIEFLSRDDFPQLQFEAAW 137 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls---~~~~~--~~-------~~~i~--~g~i~~Li~lL~~~~~~~v~~~a~~ 137 (529)
-++.+++.++ .++..+..++..|..+.. ..+.. .. ..+.. ..+++.+...+....++.++..++.
T Consensus 139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4677887776 455445555555554431 10000 00 11111 1123344445544333789999999
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC--ch---hHHHHHh--cCChHHHHH---
Q 009665 138 ALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS--PK---CRDLVLS--NGALMPLLA--- 206 (529)
Q Consensus 138 ~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~--~~---~~~~~~~--~~~i~~l~~--- 206 (529)
++.+...--+ ...+.+...++.++ .++ .+++++..|+.+|..+.... +. ....+.. .+.+..+..
T Consensus 218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~ 293 (1049)
T 3m1i_C 218 SLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1049)
T ss_dssp HHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhC
Confidence 9988776322 23355667777777 344 37899999999999998542 21 1111111 111111111
Q ss_pred --------Hh--ccchhHHHHHHHHHHHhhhhcCC------CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009665 207 --------QF--NEHAKLSMLRNATWTLSNFCRGK------PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (529)
Q Consensus 207 --------~l--~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~ 270 (529)
.+ ..+.+.+.....+..+..+.... +.........+++.++.....++.++...++..+..+++
T Consensus 294 p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~ 373 (1049)
T 3m1i_C 294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA 373 (1049)
T ss_dssp CTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 01 01224445555555554433210 111123345677788887777888999999888887766
Q ss_pred ----CC--chhHHHHHHhCcHHHHHHhcCCCCc----------------------chHHHHHHHHHHhhcCChhhHHHHH
Q 009665 271 ----GT--NDKIQAVIEAGVCPRLVELLRHPSP----------------------SVLIPALRTVGNIVTGDDMQTQCII 322 (529)
Q Consensus 271 ----~~--~~~~~~~~~~~~~~~L~~lL~~~~~----------------------~v~~~al~~L~~l~~~~~~~~~~~~ 322 (529)
.. ......++. .+++.++..+..++. ..+..+..+|..++.-.....-.
T Consensus 374 ~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~-- 450 (1049)
T 3m1i_C 374 DLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE-- 450 (1049)
T ss_dssp HHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred HHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHH--
Confidence 21 112222222 345555555533210 11223444555554322211111
Q ss_pred hcCChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHH-HHHHHcCCHHHHHHHHhc-----CChhHHHHHHHHHHHH
Q 009665 323 NHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQI-QAIIEAGIIGPLVNLLLN-----AEFEIKKEAAWAISNA 395 (529)
Q Consensus 323 ~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~l~~L~~~l~~-----~~~~v~~~a~~aL~nl 395 (529)
-+.+.+...+.. ..++..+..++|+++.++.+..... ..++. .+++.|..+... +.+.++..++|+++.+
T Consensus 451 --~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry 527 (1049)
T 3m1i_C 451 --IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQY 527 (1049)
T ss_dssp --HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence 123444445542 2278889999999999987432221 12111 144455544321 2445565799999987
Q ss_pred hcCC--CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009665 396 TSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 396 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~ 443 (529)
+..- .++... .+++.|+..+.++++.|+..|+.+|.+++....
T Consensus 528 ~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 528 PRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 6431 222222 257788888888899999999999999998654
No 92
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.21 E-value=0.00051 Score=75.76 Aligned_cols=398 Identities=14% Similarity=0.115 Sum_probs=205.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhh------cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009665 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ------SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~------~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~ 146 (529)
++.+++.+ .++..+..|+.++..+++....+.....+. .+..+.+...+...+ .+.....+.++..++...
T Consensus 243 l~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~ 319 (963)
T 2x19_B 243 IQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENH 319 (963)
T ss_dssp HHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHh
Confidence 44455555 356788899999999987532111111111 111222222334444 555566666776666421
Q ss_pred hhhHHHHHh--------CCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------chhHHHHHh--cCChHH
Q 009665 147 SENTRVVID--------HGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS--------PKCRDLVLS--NGALMP 203 (529)
Q Consensus 147 ~~~~~~~~~--------~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~--------~~~~~~~~~--~~~i~~ 203 (529)
+ ..+.. ..+++.++.+... .++.+...++..+..++.+. +.....+.. ...++.
T Consensus 320 ~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 396 (963)
T 2x19_B 320 S---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV 396 (963)
T ss_dssp H---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1 11110 1345556655553 34566777777777665411 111111110 012333
Q ss_pred HHHHhccchh--------------HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh----ccCChHHHHHHHHHH
Q 009665 204 LLAQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWAL 265 (529)
Q Consensus 204 l~~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll----~~~d~~v~~~a~~~L 265 (529)
++..+....+ .+.+..+..+|..++...+ ......+++.+...+ .+.+...+..+++++
T Consensus 397 ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al 473 (963)
T 2x19_B 397 LLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3333321111 0123444555555553221 112233444555555 455778899999999
Q ss_pred HHhccCCchhHHHHHHhCcHHHHHHhc---CCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhH
Q 009665 266 SYLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (529)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~L~~lL---~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 342 (529)
+.++........ ..++.++..+ ..+++.++..++++++.++..-.... ..+ ..+++.++..|.+ +.+
T Consensus 474 ~~i~~~~~~~~~-----~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~V 543 (963)
T 2x19_B 474 QSIAETIDVNYS-----DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PEL 543 (963)
T ss_dssp HHHTTSCCSSCC-----SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GGG
T ss_pred HHHHhhcCchhh-----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---chH
Confidence 999976443211 2333344333 33567799999999999986322222 223 3788888888854 689
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhc
Q 009665 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDL 419 (529)
Q Consensus 343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~l 419 (529)
+..|++++.+++..........+ ..++..+..++..+ +.+.+..+..+++.++...+ .....++. .+++.+...
T Consensus 544 ~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~--~l~~~l~~~ 620 (963)
T 2x19_B 544 SVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH--SLISPYIQQ 620 (963)
T ss_dssp HHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHH
Confidence 99999999999964332221111 12455556666653 56889999999999987554 33444332 244444443
Q ss_pred c----CC-CCHHHHH---HHHHHHHHHHHhhhhhhhcC-----------CCCccchHHHHHHhhchHHHHHHHh--cCCC
Q 009665 420 L----NC-PDPRIVT---VCLEGLENILKAGEAEKNMG-----------NTGGVNLFAQAIDDAEGLEKIENLQ--SHDN 478 (529)
Q Consensus 420 L----~~-~~~~v~~---~~l~aL~~l~~~~~~~~~~~-----------~~~~~~~~~~~i~~~g~~~~l~~L~--~~~~ 478 (529)
+ +. .+++.+. ..+++|..++..-....... .+....++...+... ++.+..+. ...+
T Consensus 621 l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 698 (963)
T 2x19_B 621 LEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQV--FQLIQKVLSKWLND 698 (963)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHH--HHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHH--HHHHHHHHHhccCc
Confidence 3 22 2444444 45556655554422100000 000112334333322 44444442 2356
Q ss_pred HHHHHHHHHHHHhhCC
Q 009665 479 TEIYEKAVKILETYWV 494 (529)
Q Consensus 479 ~~v~~~a~~il~~~~~ 494 (529)
.++.+.+..++..+..
T Consensus 699 ~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 699 AQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7888888888887543
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.18 E-value=0.00067 Score=75.42 Aligned_cols=341 Identities=11% Similarity=0.087 Sum_probs=182.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC--hh---hHHHHHh-
Q 009665 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SE---NTRVVID- 155 (529)
Q Consensus 82 s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~~~~- 155 (529)
.++..++..++.++..+++- .+...+.+..+++.+.+.+.. + ++++..|+.||..+.... +. ....+..
T Consensus 206 ~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 206 GSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 34567888888888887653 223445667788887743322 4 899999999999998742 21 0111110
Q ss_pred -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHHHhccchh
Q 009665 156 -HGAVPIFVR-LL-------------SSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHAK 213 (529)
Q Consensus 156 -~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~~ 213 (529)
.+++..+.. ++ ...+.+.....+..+..+.. ..+..+..+ ..+++.++... ...+
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 122222211 11 12234444455555544331 111111211 12344444444 3446
Q ss_pred HHHHHHHHHHHhhhhc----CCCC--CchhhhhchHHHHHHhhccC-------------------Ch---HHHHHHHHHH
Q 009665 214 LSMLRNATWTLSNFCR----GKPQ--PLFEQTRPALPALERLIHSN-------------------DD---EVLTDACWAL 265 (529)
Q Consensus 214 ~~~~~~a~~~L~~l~~----~~~~--~~~~~~~~~l~~L~~ll~~~-------------------d~---~v~~~a~~~L 265 (529)
.++...++..+..++. .... ........+++.++..+.-+ |. ..+..+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 6777777777767666 3211 11233455566666555321 00 1233344555
Q ss_pred HHhccCCchhHHHHHHhCcHHHHHHhcC--CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhcc-----CC
Q 009665 266 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-----NY 338 (529)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~ 338 (529)
..++...... ++. -+.+.+-..+. ..++..+..+++++|.++.+.......-+-..+++.+..+... +
T Consensus 438 ~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~- 512 (1049)
T 3m1i_C 438 VYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN- 512 (1049)
T ss_dssp HHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred HHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence 5555322211 111 22334444444 3567789999999999986543321111111344455544321 2
Q ss_pred chhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHH--------HHH
Q 009665 339 KKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI--------KFL 407 (529)
Q Consensus 339 ~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l 407 (529)
.+.++..++|+++.++.- .++. +. .+++.++..+.++++.|+..|++++.+++..+..... .++
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~----l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~ 587 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNF----LR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHH----HH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHH----HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 455666799999987752 2322 22 2567788888888899999999999999985443221 221
Q ss_pred HHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 408 VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 408 ~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
..++..|..++...+.+-...+.+++..++...
T Consensus 588 --~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 588 --QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp --HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 123444555555555555666777777776543
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.17 E-value=7.4e-05 Score=82.47 Aligned_cols=338 Identities=13% Similarity=0.111 Sum_probs=189.7
Q ss_pred cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009665 124 SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL---SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200 (529)
Q Consensus 124 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~ 200 (529)
.+.+ ...+..++++++.++.+..+.. ...++.++..+ .++++.++..++|+++.++..-....+. -..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence 3444 7889999999999998643311 12334444433 3357889999999999997431111111 2357
Q ss_pred hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC--ChHHHHHHHHHHHHhccCCc-hhHH
Q 009665 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ 277 (529)
Q Consensus 201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~L~~l~~~~~-~~~~ 277 (529)
++.++..+ .+ +.++..|++++.++|......-......++..+..++... +...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77888877 33 7889999999999997643222334566667777777753 57889999999999886543 3333
Q ss_pred HHHHhCcHHHHHHhc----CCC-CcchHH---HHHHHHHHhhcCCh----------------------hhHHHHHhcCCh
Q 009665 278 AVIEAGVCPRLVELL----RHP-SPSVLI---PALRTVGNIVTGDD----------------------MQTQCIINHQAL 327 (529)
Q Consensus 278 ~~~~~~~~~~L~~lL----~~~-~~~v~~---~al~~L~~l~~~~~----------------------~~~~~~~~~~~l 327 (529)
..++ .+++.+...+ ... ++..+. ..+.+|+.++..-. ..... +-..++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence 3333 3444444433 222 333332 44555555543211 00111 222456
Q ss_pred HHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH----Hhc-CChhHHHHHHHHHHHHhc--CC
Q 009665 328 PCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL----LLN-AEFEIKKEAAWAISNATS--GG 399 (529)
Q Consensus 328 ~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~----l~~-~~~~v~~~a~~aL~nl~~--~~ 399 (529)
+.+..++.. ..+..+.+.++.++..++..-.+... .++|.++.. +.. +.+ ..++.++.++. +.
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~ 756 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAH 756 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCC
Confidence 666666643 12567889999999887642111111 123333333 332 122 34444555443 22
Q ss_pred CH---HHHHHHHHcCChHHHHhccC---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccch-HHHHHHhhchHHHHHH
Q 009665 400 SN---EQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL-FAQAIDDAEGLEKIEN 472 (529)
Q Consensus 400 ~~---~~~~~l~~~~~l~~L~~lL~---~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~g~~~~l~~ 472 (529)
++ .....+.+ .++..+..++. ..+++++......+..++......--. ... +..+ ++.+..
T Consensus 757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~i------~~~~~~ 824 (963)
T 2x19_B 757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKAV------FQCAVL 824 (963)
T ss_dssp CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHHH------HHHHHH
T ss_pred CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHHH------HHHHHH
Confidence 21 12221111 12333333332 246999999999999999776532110 011 2222 333344
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCC
Q 009665 473 LQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 473 L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
...+.+.++...+.+.+..++..
T Consensus 825 ~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 825 ALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HcCCCCHHHHHHHHHHHHHHHhc
Confidence 45688999999999999988764
No 95
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.17 E-value=5e-05 Score=70.02 Aligned_cols=186 Identities=15% Similarity=0.099 Sum_probs=137.0
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh
Q 009665 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 323 (529)
Q Consensus 244 ~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 323 (529)
..++.-|.+.+...+..++..|..+...+......++..+++..|+......+..++..++++++++....+..-..+-+
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 34556666778888999999999865566678889999999999999999999999999999999999864433333335
Q ss_pred cCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CCHHHHHHHHh---cCChhHHHHHHH
Q 009665 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------A--GIIGPLVNLLL---NAEFEIKKEAAW 390 (529)
Q Consensus 324 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~l~~L~~~l~---~~~~~v~~~a~~ 390 (529)
...+..+..++.+. ...|.+.|...|-.++..++.....+.+ . ..+..|+.+|. ..|.+++..|..
T Consensus 201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 67888999999876 8999999999999988754433322222 1 24889999997 668999999888
Q ss_pred HHHHHhcCCC-HH----HHHHHHHcCChHHHHhccCCC--CHHHHHH
Q 009665 391 AISNATSGGS-NE----QIKFLVSQGCIKPLCDLLNCP--DPRIVTV 430 (529)
Q Consensus 391 aL~nl~~~~~-~~----~~~~l~~~~~l~~L~~lL~~~--~~~v~~~ 430 (529)
.|-.+..+.+ .+ ....|-+.|+-..+...++.. +++++..
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 8877776644 22 334444556556666666654 5565544
No 96
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.01 E-value=0.00015 Score=66.85 Aligned_cols=189 Identities=12% Similarity=0.135 Sum_probs=142.5
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009665 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (529)
Q Consensus 287 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (529)
.+++-|.+.+......++.-|..+...+......++..+++..|+.+.... +...+..+..++.++... ......++.
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs 199 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence 344555566777889999999997766778888999999999999999988 999999999999999986 555556663
Q ss_pred -cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH--------c--CChHHHHhccC---CCCHHHHHHHH
Q 009665 367 -AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS--------Q--GCIKPLCDLLN---CPDPRIVTVCL 432 (529)
Q Consensus 367 -~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~--------~--~~l~~L~~lL~---~~~~~v~~~~l 432 (529)
..++..+..++.+.+..|.+.|+..|..++...+ .....+.+ . ..+..|+.+|+ ..|.+++..+.
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 4578889999998888999999999999987642 11111111 1 23778889997 78899999999
Q ss_pred HHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCC--CHHHHHH
Q 009665 433 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEK 484 (529)
Q Consensus 433 ~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~--~~~v~~~ 484 (529)
..|..++...+.... ...+...+++.|.-..+..++... ++++.+.
T Consensus 279 tLIN~lL~~apd~d~------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDS------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHH------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhH------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 999988877543221 234677788888777888866554 6665443
No 97
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.97 E-value=0.0018 Score=70.78 Aligned_cols=357 Identities=13% Similarity=0.123 Sum_probs=187.5
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHH
Q 009665 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVL 196 (529)
Q Consensus 119 Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~ 196 (529)
+...|....++++...++.+|..+.+=- ....+++.+.++.| ..+| .+++++..|+.+|..+.... +.+.+.+.
T Consensus 211 l~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~ 286 (1073)
T 3gjx_A 211 CQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFE 286 (1073)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHH
Confidence 3334444444788888999999988722 34567788888988 4776 46789999999999988532 22222221
Q ss_pred h--cCChHHHHHHh------------ccchhHHHHHHHHHHHhhhhcCC------CCCchhhhhchHHHHHHhhccCChH
Q 009665 197 S--NGALMPLLAQF------------NEHAKLSMLRNATWTLSNFCRGK------PQPLFEQTRPALPALERLIHSNDDE 256 (529)
Q Consensus 197 ~--~~~i~~l~~~l------------~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~L~~ll~~~d~~ 256 (529)
. ..++..+-.++ ....+.+.....+.++..+.... .+........++..++.+-..+|.+
T Consensus 287 ~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~e 366 (1073)
T 3gjx_A 287 TLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETE 366 (1073)
T ss_dssp HHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHH
Confidence 1 01111111111 12234566666777776655432 0011222334455566666788999
Q ss_pred HHHHHHHHHHHhccC----C-----ch------------hHHHHHH---hCcHHHHHHhcCCCCc----------chHH-
Q 009665 257 VLTDACWALSYLSDG----T-----ND------------KIQAVIE---AGVCPRLVELLRHPSP----------SVLI- 301 (529)
Q Consensus 257 v~~~a~~~L~~l~~~----~-----~~------------~~~~~~~---~~~~~~L~~lL~~~~~----------~v~~- 301 (529)
+...++.....++.. . .. ....+.. ..+...++.-+..+.+ .++.
T Consensus 367 i~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~ 446 (1073)
T 3gjx_A 367 IFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREF 446 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHH
Confidence 988888877666431 0 00 0111111 1223333344433221 0110
Q ss_pred -----------HHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC-CchhHHHHHHHHHHHHhcC-CHHHHHHHHHcC
Q 009665 302 -----------PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAG-NVNQIQAIIEAG 368 (529)
Q Consensus 302 -----------~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~ 368 (529)
..-.+|..++.-....+.. -.++.+...+..+ .++.....+||+++.++.. .++.-..++. .
T Consensus 447 ~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~ 521 (1073)
T 3gjx_A 447 MKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-T 521 (1073)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-H
T ss_pred HhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-H
Confidence 0111222222111111111 1233344334332 2688999999999999864 3322222222 2
Q ss_pred CHHHHHHHHhcC---C--hhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665 369 IIGPLVNLLLNA---E--FEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 369 ~l~~L~~~l~~~---~--~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
+++.|+.+.... + ..++...+|+++.....- .++..+. ++..|++.+...++.|+..++.++..++..
T Consensus 522 vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 522 VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 677787777654 2 235566678888876531 2333332 577888888889999999999999999887
Q ss_pred hhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 009665 442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 490 (529)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~ 490 (529)
+...-...+++...+|...+-+. .......|....-..+|+....++.
T Consensus 597 C~~~lv~~~~~e~~p~i~~il~~-~~~~~~~l~~~~~~~lyeav~~vi~ 644 (1073)
T 3gjx_A 597 CRRHFVQVQVGEVMPFIDEILNN-INTIICDLQPQQVHTFYEAVGYMIG 644 (1073)
T ss_dssp TGGGGTSCCTTCSSCHHHHHHTS-HHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccchHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 75432111222234565544321 1222223333333444544444443
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.87 E-value=6.9e-05 Score=81.90 Aligned_cols=345 Identities=12% Similarity=0.054 Sum_probs=183.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC--hhhHHHHHhCCC
Q 009665 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SENTRVVIDHGA 158 (529)
Q Consensus 81 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~ 158 (529)
.+.++.+...++.++...++ -.+...++..++++.+..+|.. ++++..|+.||..+.... ++....++..=.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 34778888999999999985 2446677778899999999874 789999999999998744 333333332200
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCc-----hhHHH--HHhcCChHHHHHHhccchhHHHHHHHHHH
Q 009665 159 VPIFVRLLS--SPTDDVREQAVWALGNVAG------DSP-----KCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (529)
Q Consensus 159 i~~L~~lL~--~~~~~v~~~a~~~L~nl~~------~~~-----~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 223 (529)
+...+..+. ..+.++.+..+..+..++. ..+ +.+.. -.-.+.++.++.++ .+.+.++...++..
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~F 355 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPF 355 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 111111122 3566766555544443321 111 10000 01124677777777 44455666666655
Q ss_pred HhhhhcCC---CC----C--chhhhhchHHHHHHhhccC-----Ch-----------HHHHHHHHHHHHhc-cCCchhHH
Q 009665 224 LSNFCRGK---PQ----P--LFEQTRPALPALERLIHSN-----DD-----------EVLTDACWALSYLS-DGTNDKIQ 277 (529)
Q Consensus 224 L~~l~~~~---~~----~--~~~~~~~~l~~L~~ll~~~-----d~-----------~v~~~a~~~L~~l~-~~~~~~~~ 277 (529)
+..+.... +. . .......+++.++.-+.-+ +. +.|.... .+...+ .-.++..-
T Consensus 356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l 434 (980)
T 3ibv_A 356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFS 434 (980)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHH
Confidence 55444220 11 1 1123344555555444421 11 2344444 222222 11111111
Q ss_pred HHHHhCcHHHHHHhcC---CCCcchHHHHHHHHHHhhcCChhhHHHH-Hhc----CChHHHHHHhc-----cCCchhHHH
Q 009665 278 AVIEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCI-INH----QALPCLLDLLT-----QNYKKSIKK 344 (529)
Q Consensus 278 ~~~~~~~~~~L~~lL~---~~~~~v~~~al~~L~~l~~~~~~~~~~~-~~~----~~l~~L~~lL~-----~~~~~~v~~ 344 (529)
...-.-+.+.+...+. +.++..++.++.+|+.++.+.......+ -.. .+++.+..++. .+ .+.|+.
T Consensus 435 ~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~ 513 (980)
T 3ibv_A 435 SYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL 513 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence 1000011122223332 2457889999999999988654321111 001 23445555544 44 789999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009665 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 418 (529)
Q Consensus 345 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 418 (529)
.++|+++..+.--.. ....++.++..+-+ ++..|+..|++++.+++..+.+....++- .++..+..
T Consensus 514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~--~il~~l~~ 585 (980)
T 3ibv_A 514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTE--SSLAMLGD 585 (980)
T ss_dssp HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHH--HHHHHTTG
T ss_pred HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHH--HHHHHHHH
Confidence 999999998872111 11355555555544 46789999999999998765432212211 13444444
Q ss_pred ccCC-----CC----------------HHHHHHHHHHHHHHHHhh
Q 009665 419 LLNC-----PD----------------PRIVTVCLEGLENILKAG 442 (529)
Q Consensus 419 lL~~-----~~----------------~~v~~~~l~aL~~l~~~~ 442 (529)
+|.. .+ .+-+....++++.++...
T Consensus 586 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~ 630 (980)
T 3ibv_A 586 LLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSG 630 (980)
T ss_dssp GGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHS
T ss_pred hhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCC
Confidence 4442 11 123556788888888654
No 99
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.72 E-value=0.00061 Score=74.49 Aligned_cols=307 Identities=10% Similarity=0.005 Sum_probs=168.7
Q ss_pred CCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hhHHHHHhcCChHH
Q 009665 126 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP--KCRDLVLSNGALMP 203 (529)
Q Consensus 126 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~--~~~~~~~~~~~i~~ 203 (529)
.+ +.++..++.||.....- -....+++.+.++.+..+|.. ++++..|+.+|..+..... ..+..++..=.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 55 88999999999999872 223456667888999988864 8999999999999984432 22222222101112
Q ss_pred HHHHhcc-chhHHHHHHHHHHHhhhh------cCCCC--------CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHh
Q 009665 204 LLAQFNE-HAKLSMLRNATWTLSNFC------RGKPQ--------PLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (529)
Q Consensus 204 l~~~l~~-~~~~~~~~~a~~~L~~l~------~~~~~--------~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l 268 (529)
.+..+.. ..|.+..+..+..+..++ ...+. .......++++.++.++.+++.++...++..+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 2222211 345555544444332221 22221 11134568899999999999989888777777655
Q ss_pred ccC----C-----chhHHHHHHhCcHHHHHHhcCCCCc----------------chHHHHHHHHHHhhcCChhhHHHHHh
Q 009665 269 SDG----T-----NDKIQAVIEAGVCPRLVELLRHPSP----------------SVLIPALRTVGNIVTGDDMQTQCIIN 323 (529)
Q Consensus 269 ~~~----~-----~~~~~~~~~~~~~~~L~~lL~~~~~----------------~v~~~al~~L~~l~~~~~~~~~~~~~ 323 (529)
... . ......++. .+++.++.-+..+.. ..|....-.+..++.-.+...-..+-
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 421 0 111111211 344444444543211 12222221111221111111111000
Q ss_pred cCChHHHHHHhc---cCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcC----CHHHHHHHHh-----cCChhHHHHHHH
Q 009665 324 HQALPCLLDLLT---QNYKKSIKKEACWTISNITAGNVNQIQAII-EAG----IIGPLVNLLL-----NAEFEIKKEAAW 390 (529)
Q Consensus 324 ~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~----~l~~L~~~l~-----~~~~~v~~~a~~ 390 (529)
.-+.+.+...+. +. ++..++.++.+++.++.+......... ... +++.+..++. ..++.|+..+++
T Consensus 439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~ 517 (980)
T 3ibv_A 439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME 517 (980)
T ss_dssp HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 011222333332 33 688899999999999886332111000 001 3455555555 568899999999
Q ss_pred HHHHHhcCC--CHHHHHHHHHcCChHHHHh--ccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009665 391 AISNATSGG--SNEQIKFLVSQGCIKPLCD--LLNCPDPRIVTVCLEGLENILKAGEA 444 (529)
Q Consensus 391 aL~nl~~~~--~~~~~~~l~~~~~l~~L~~--lL~~~~~~v~~~~l~aL~~l~~~~~~ 444 (529)
+++..+..- .++... .+++.+++ .+.++++.|+..+..++.++++....
T Consensus 518 ~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 518 ILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 999987642 122222 24555666 66677889999999999999987653
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0012 Score=61.05 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=125.9
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChh-hHHh--hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 009665 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (529)
Q Consensus 69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~-~~~i--~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~ 145 (529)
++..+| +-+.|.|.+...|..|+..+.+++........ .... -....+.+...+.+.+ ..++..++.++..++..
T Consensus 8 d~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~ 85 (278)
T 4ffb_C 8 DYTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDA 85 (278)
T ss_dssp ---CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTT
T ss_pred hhhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHH
Confidence 344566 66889999999999999999998865321111 1111 1235566777888777 89999999999988753
Q ss_pred Chh-----hHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHH
Q 009665 146 TSE-----NTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 219 (529)
Q Consensus 146 ~~~-----~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~ 219 (529)
... ......-..++|.|+. .+.+....++..+..++..++...... .. +++.++..+ .+.++.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~ 158 (278)
T 4ffb_C 86 FASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAA 158 (278)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHH
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHH
Confidence 211 1111112345677775 577788899999988887776322111 11 134444555 6667888888
Q ss_pred HHHHHhhhhcCC---CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665 220 ATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (529)
Q Consensus 220 a~~~L~~l~~~~---~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~ 272 (529)
++..|..+.... ..........+++.+..++.+.|+.||..+..++..+-..-
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 887777765542 11222334567778888999999999999999998876543
No 101
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.57 E-value=0.021 Score=62.54 Aligned_cols=296 Identities=13% Similarity=0.127 Sum_probs=156.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHH-HHhhcCCCChHHHHHHHHHHHHHhcCC-hhhHHHHHh--CC
Q 009665 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVID--HG 157 (529)
Q Consensus 82 s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~L-i~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~--~g 157 (529)
+.++.+...++.+++.+++= -+...+++.++++.| ..+|. + +.++..|+.||..+.... ++....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 56777888888999988753 346677888999988 46664 4 789999999999998743 222222211 11
Q ss_pred ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-C-------ChHHHHHHhccchhHHH
Q 009665 158 AVPIFVRLL-------------SSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-G-------ALMPLLAQFNEHAKLSM 216 (529)
Q Consensus 158 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-~-------~i~~l~~~l~~~~~~~~ 216 (529)
++..+..++ ...+.+.....+.++..+... ....+... + ++..++.+- ...+.++
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei 367 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI 367 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence 222222222 112334444455555554321 12222221 1 122233332 3456777
Q ss_pred HHHHHHHHhhhhc----CCC-----C------------CchhhhhchHH----HHHHhhccCC-----------------
Q 009665 217 LRNATWTLSNFCR----GKP-----Q------------PLFEQTRPALP----ALERLIHSND----------------- 254 (529)
Q Consensus 217 ~~~a~~~L~~l~~----~~~-----~------------~~~~~~~~~l~----~L~~ll~~~d----------------- 254 (529)
.+.++..-..|.. ..+ . .......+++. .++.-+..++
T Consensus 368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 6665544333322 111 0 01111233333 3333333221
Q ss_pred ---h-----HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHHHHHHhhcCChhh-HHHHHh
Q 009665 255 ---D-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQ-TQCIIN 323 (529)
Q Consensus 255 ---~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~-~~~~~~ 323 (529)
. .+..+++..+.++.. .+... -+++.+...+.. .++.....+++++|.++..-... -..++-
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~~--~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLDY--VDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCH--HHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHhcCCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 0 122233333332221 11111 133444444443 35778899999999997543322 212222
Q ss_pred cCChHHHHHHhccCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009665 324 HQALPCLLDLLTQNY----KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (529)
Q Consensus 324 ~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (529)
.+++.|+.+..++. ...++...+|++|..+. ..++.... ++..|++.+.+.++.|+..|+.++..++
T Consensus 521 -~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 521 -TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp -HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred -HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 46667777665442 23456667799998765 22333222 5667888888889999999999999998
Q ss_pred cCCC
Q 009665 397 SGGS 400 (529)
Q Consensus 397 ~~~~ 400 (529)
..+.
T Consensus 595 ~~C~ 598 (1073)
T 3gjx_A 595 QKCR 598 (1073)
T ss_dssp HHTG
T ss_pred HHHH
Confidence 7654
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.37 E-value=0.00052 Score=67.08 Aligned_cols=245 Identities=16% Similarity=0.135 Sum_probs=153.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh-hhHHhhcCChHHHHHhhc---------CCCChHHHHHHHHHHH
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP-INEVIQSGVVPRFIEFLS---------RDDFPQLQFEAAWALT 140 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~-~~~~i~~g~i~~Li~lL~---------~~~~~~v~~~a~~~L~ 140 (529)
+-...|+..|-++..++|+-|+.+||.++....... ...-.+..+.-.|+-.|. +..-..||+.|+.+|+
T Consensus 174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 356788888999999999999999999986532100 000011122333333331 2222468999999999
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHH
Q 009665 141 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 220 (529)
Q Consensus 141 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a 220 (529)
.+ ..-++. ..++..++..+..+..+++..++-.|..+. + .-.. -.++++.++..| .+.+.+++..|
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---D-LL~~--Ld~Vv~aVL~GL-~D~DDDVRAVA 319 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---E-FVED--KDGLCRKLVSLL-SSPDEDIKLLS 319 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---G-GCCC--HHHHHHHHHHHT-TCSSHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---H-HHHH--HHHHHHHHHhhc-CCcccHHHHHH
Confidence 99 544433 344555555567788999999999999881 1 1111 123566677777 66788999999
Q ss_pred HHHHhhhhcCCCCCchhhhhchHHHHHHhhccCC--hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcc
Q 009665 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298 (529)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 298 (529)
+.+|.-++ .+ .....++..+...|.+-| .......+..|+.|+..+... ..+...+|+|..+++|.-..
T Consensus 320 AetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 320 AELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHH
T ss_pred HHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHH
Confidence 99999888 11 234556666666666432 122333444555555433211 11237899999999999999
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-HhccCCchhHHHHHHHHH
Q 009665 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNYKKSIKKEACWTI 350 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~v~~~a~~~L 350 (529)
||..+++++..+.. . .++..+.+ +|-.+ +.+++..+..+.
T Consensus 391 VR~AVL~TL~tfL~--~---------~~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 391 VRTSILNMVKNLSE--E---------SIDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHHTTTCCC--H---------HHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--h---------hHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 99999999988871 1 22333333 33334 677777665554
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.35 E-value=0.0015 Score=58.95 Aligned_cols=181 Identities=14% Similarity=0.066 Sum_probs=117.2
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh----hhHHH
Q 009665 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD----MQTQC 320 (529)
Q Consensus 245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~----~~~~~ 320 (529)
.+...+.+.|..-+..++..|........+.....++ .+++-+.-.+.+.+..+...++.+|..+...-. .....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3445555667666666666666654332221111111 122222223346788888888888877753110 00110
Q ss_pred HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665 321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 321 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
...-++|.|+.-+.++ ...+|..+-.++..++.- ++. .+++.+++-+.+.+..+|.+++..+..+....
T Consensus 129 -ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 129 -EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp -HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 0123678889888888 788998888777666542 222 26677888888899999999999999997532
Q ss_pred CHHHHHHHHHcCCh---HHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665 400 SNEQIKFLVSQGCI---KPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 400 ~~~~~~~l~~~~~l---~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
+.. ....+ +.+..++.+.|..|+..|+.++..++...
T Consensus 199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 212 23468 99999999999999999999999887543
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.34 E-value=0.0029 Score=57.03 Aligned_cols=177 Identities=15% Similarity=0.076 Sum_probs=115.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhh----cCCCC
Q 009665 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC----RGKPQ 233 (529)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~----~~~~~ 233 (529)
.+...|-+.+..-+..++..|.......+ +.+.. .++.++..+. .+++..+...++.+|..+. ...+.
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34444555566666666666655543322 11111 2222333221 3456667777776666553 32223
Q ss_pred CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 009665 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (529)
Q Consensus 234 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~ 313 (529)
........++|.|+.-+.+..+.++..+-.++..++...+ -..+++.++..+.+.++..+..++..++.+...
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 3333346788999999998889999888888776653211 114667788889999999999999999999764
Q ss_pred ChhhHHHHHhcCCh---HHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665 314 DDMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 314 ~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
.... ....+ +.+..++.++ +..||..|..++..+-.
T Consensus 198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 3222 23568 9999999998 99999999999987655
No 105
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.33 E-value=0.038 Score=50.95 Aligned_cols=205 Identities=15% Similarity=0.108 Sum_probs=150.7
Q ss_pred HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh----hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009665 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (529)
Q Consensus 277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 352 (529)
+.+...+++..|+..|..-+.+.+..+..+++++...... ....+.. -.+.+..++....++++--.+...|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 4466679999999999888888999999999999875432 3333332 233333333333245666666666777
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc--CChHHHHhccCCCCHHHHHH
Q 009665 353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--GCIKPLCDLLNCPDPRIVTV 430 (529)
Q Consensus 353 l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~lL~~~~~~v~~~ 430 (529)
++.. ......++..+.+..+.+.+..++.++...|...+..+......-...+|..+ .+...+..||.+++.-++..
T Consensus 150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 7666 66677788888899999999999999999999999999876443444444332 34677888999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009665 431 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 493 (529)
Q Consensus 431 ~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 493 (529)
++..|+.++..-... +.+...+.+..-+..+-.|..+++..|+-.|.++..-|.
T Consensus 229 SlKLLgelLldr~N~---------~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 229 SLKLLGELLLDRHNF---------TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp HHHHHHHHHHSGGGH---------HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHH---------HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 999999998765432 234666666667888888899999999988888765443
No 106
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.011 Score=54.39 Aligned_cols=189 Identities=11% Similarity=0.117 Sum_probs=125.7
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhhcCChhhHH--HHH--hcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCC------
Q 009665 288 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ--CII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------ 357 (529)
Q Consensus 288 L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~--~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------ 357 (529)
+-+-|.+.++..|..|+..|..+......... ..+ -....+.+...+.+. +..+...++.++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 55778999999999999999888765432211 111 123456677788887 8999999999999887621
Q ss_pred HHHHHHHHHcCCHHHHHHH-HhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHH
Q 009665 358 VNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 436 (529)
Q Consensus 358 ~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~ 436 (529)
.......+ ..++|.|+.- +.+....++..|..++..++....+.. .+++.+...+++.+|.++..++..|.
T Consensus 93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111222 2367777764 667778899999988888775432111 13566778889999999999999999
Q ss_pred HHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665 437 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
.++...... ..+ ....+. ..++.+..+.+|.+++|+..|..++-.+|-.
T Consensus 165 ~~l~~fg~~-------~~~-~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLT-------NVN-VQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTT-------TCC-HHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCC-------cCC-chhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 988642211 011 111121 1244577788999999999999988776653
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.25 E-value=0.004 Score=61.05 Aligned_cols=244 Identities=12% Similarity=0.084 Sum_probs=156.7
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhh--CC--------CCHHHHHHHHHHHH
Q 009665 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLL--SS--------PTDDVREQAVWALG 182 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL--~~--------~~~~v~~~a~~~L~ 182 (529)
+...|+.-|-++. .++|.-|+-+|..+............. ..+.-.|+.++ .. --..||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 5566777777777 899999999999987632211000011 11222222222 11 23679999999999
Q ss_pred HhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHH
Q 009665 183 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC 262 (529)
Q Consensus 183 nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~ 262 (529)
.+ ..-+.- ..++..++..+ .....+++..++-.|.++ ..--. ...++++.++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL~----~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFVE----DKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGCC----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHHH----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence 99 554431 23444444444 555788888888888888 11111 1578899999999999999999999
Q ss_pred HHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCC--cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCch
Q 009665 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 340 (529)
Q Consensus 263 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 340 (529)
.+|..++ ..+... .++..+...|.+.+ ..-....+..|+.++...... ..+...+|.|..++.|+ -.
T Consensus 321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence 9999998 223333 34555666665432 223444566777777654311 12347899999999999 99
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 009665 341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (529)
Q Consensus 341 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~ 393 (529)
.||..+..++..+. ....... ...++|-..+.+++..+..+..
T Consensus 390 SVR~AVL~TL~tfL--~~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998887 2232221 2233455667788887777664
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.18 E-value=0.025 Score=52.14 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=139.6
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----hHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK----CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 227 (529)
.+...+.+..|+..|..-+.+.|..+..++.++...... ..+.+.. -...+..++..-.++++.-.+-..|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 455668889999999888899999999999999865532 2233332 2333333333333455555555555555
Q ss_pred hcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh---CcHHHHHHhcCCCCcchHHHHH
Q 009665 228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPAL 304 (529)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~al 304 (529)
++...-.......+.+-.+...+..++=+|..+|..++..+..........++.. .++...-.+|.+++.-++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 5543222333334555667778888888999999999998776554444444443 4577778899999999999999
Q ss_pred HHHHHhhcCCh--hh-HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009665 305 RTVGNIVTGDD--MQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (529)
Q Consensus 305 ~~L~~l~~~~~--~~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 356 (529)
..||.+..... .. ...+-+..-+..++.+|++. +..++-+|..++--+.+.
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeC
Confidence 99999987532 22 22223556688999999999 999999999999888773
No 109
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.07 E-value=0.00018 Score=64.46 Aligned_cols=185 Identities=17% Similarity=0.158 Sum_probs=127.4
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009665 121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200 (529)
Q Consensus 121 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~ 200 (529)
.++.+++ +.++..++..+ ....|..++.++++.||..++..+.
T Consensus 57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------ 99 (244)
T 1lrv_A 57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------ 99 (244)
T ss_dssp GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence 4556777 89998888742 1344677888899999998886421
Q ss_pred hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHH
Q 009665 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (529)
Q Consensus 201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 280 (529)
.+.+..++ .+.+..++..++..+ +. +.+..++.++++.|+..+... +.
T Consensus 100 ~~~L~~ll-~D~d~~VR~~aA~~l-------~~----------~~L~~L~~D~d~~VR~~aA~~---l~----------- 147 (244)
T 1lrv_A 100 REQLSALM-FDEDREVRITVADRL-------PL----------EQLEQMAADRDYLVRAYVVQR---IP----------- 147 (244)
T ss_dssp SGGGGGTT-TCSCHHHHHHHHHHS-------CT----------GGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred HHHHHHHH-cCCCHHHHHHHHHhC-------CH----------HHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence 12344455 777888888877743 10 134566778899999988763 11
Q ss_pred HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Q 009665 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360 (529)
Q Consensus 281 ~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 360 (529)
.+.+..++.++++.|+..++..++ .+.+..++.++ ++.||..++..+
T Consensus 148 ----~~~l~~l~~D~d~~VR~~aa~~l~------------------~~ll~~ll~D~-d~~VR~aaa~~l---------- 194 (244)
T 1lrv_A 148 ----PGRLFRFMRDEDRQVRKLVAKRLP------------------EESLGLMTQDP-EPEVRRIVASRL---------- 194 (244)
T ss_dssp ----GGGGGGTTTCSCHHHHHHHHHHSC------------------GGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence 123446678888999988877511 13455677787 999999988652
Q ss_pred HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHH
Q 009665 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 435 (529)
Q Consensus 361 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL 435 (529)
..+.|..++.++++.||..++..+. .+.|..| +++++.|+..+...|
T Consensus 195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1245777788899999999998753 2455556 889999998876554
No 110
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.07 E-value=0.034 Score=50.97 Aligned_cols=292 Identities=15% Similarity=0.146 Sum_probs=171.2
Q ss_pred HHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-cCChHHHHH
Q 009665 182 GNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTD 260 (529)
Q Consensus 182 ~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~ 260 (529)
.++.-+.+..-+-+...+++..+...+ +-.+.++.+..+..|...+..+ .....-....+|.++..+. +++++|...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEEe
Confidence 344444445567777888888888888 6678888999999888777653 2222234678898888887 778999999
Q ss_pred HHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-------Ccc-------hHHHHHHHHHHhhcC-------------
Q 009665 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-------SPS-------VLIPALRTVGNIVTG------------- 313 (529)
Q Consensus 261 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-------~~~-------v~~~al~~L~~l~~~------------- 313 (529)
.-..|+|...+.....+..+..|.+..|...+... +.. +...+++++.|+...
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G 424 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG 424 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence 99999999998877777778889999988876321 112 334455555555421
Q ss_pred C--hhhHHHHHhcCChHHHHHHhccCC-----chhHHHHHHHHHHHHhcCC---HHHH----HHHHHcCCHHHHHHHHh-
Q 009665 314 D--DMQTQCIINHQALPCLLDLLTQNY-----KKSIKKEACWTISNITAGN---VNQI----QAIIEAGIIGPLVNLLL- 378 (529)
Q Consensus 314 ~--~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~---~~~~----~~l~~~~~l~~L~~~l~- 378 (529)
. ..+...+++..++..|+..|+-+. --++|......+--+.+.. .+.. ......+++..++-.+.
T Consensus 425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~sW 504 (619)
T 3c2g_A 425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYSW 504 (619)
T ss_dssp HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHHH
Confidence 1 123334556678888888886541 1245555555444444320 0100 01111223333333222
Q ss_pred ---cC-Ch---h----HHHHHHHHHHHHhcCC-CHHH-HHHHHHcCChHHHHhccCCC--CHHHHHHHHHHHHHHHHhhh
Q 009665 379 ---NA-EF---E----IKKEAAWAISNATSGG-SNEQ-IKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 379 ---~~-~~---~----v~~~a~~aL~nl~~~~-~~~~-~~~l~~~~~l~~L~~lL~~~--~~~v~~~~l~aL~~l~~~~~ 443 (529)
.. +. + +.+.+...|..+...+ ...+ ..++.. +..=+.+|+.. .|.....++..-..+++.++
T Consensus 505 a~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~Ys---IsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP 581 (619)
T 3c2g_A 505 VFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYS---IDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP 581 (619)
T ss_dssp HHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTTT---SCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred hhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhheee---ccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence 11 11 1 2234445555554433 2222 222221 33334556543 36666777777777776654
Q ss_pred hhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009665 444 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 492 (529)
Q Consensus 444 ~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 492 (529)
.... .-.- --..++-+.+|+|+++...|..++.+|
T Consensus 582 ~~Ad------------~W~i--~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 582 TRAD------------IWTI--DRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp THHH------------HSCC--CHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred chhc------------ccee--chHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 3221 0000 123467788999999999999999876
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.02 E-value=0.00028 Score=63.28 Aligned_cols=185 Identities=16% Similarity=0.082 Sum_probs=127.8
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009665 79 GVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA 158 (529)
Q Consensus 79 ~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 158 (529)
.+.++++.++..++..+ . ...|..++.+++ +.+|..++..| .
T Consensus 58 ll~d~~~~VR~~AA~~l------~-------------~~~l~~L~~D~~-~~VR~~aA~~L---~--------------- 99 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYS------P-------------VEALTPLIRDSD-EVVRRAVAYRL---P--------------- 99 (244)
T ss_dssp GTTCSSHHHHHHHHTTS------C-------------GGGGGGGTTCSS-HHHHHHHHTTS---C---------------
T ss_pred HhcCCCHHHHHHHHHhC------C-------------HHHHHHHccCcC-HHHHHHHHHHC---C---------------
Confidence 45788899998888742 0 123667788888 99999998642 1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhh
Q 009665 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (529)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (529)
.+.|..++.+++..||..++..+ . ...+..++ .+.+..++..++..+ .
T Consensus 100 ~~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~-~D~d~~VR~~aA~~l---~---------- 147 (244)
T 1lrv_A 100 REQLSALMFDEDREVRITVADRL---P---------------LEQLEQMA-ADRDYLVRAYVVQRI---P---------- 147 (244)
T ss_dssp SGGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGT-TCSSHHHHHHHHHHS---C----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHH-cCCCHHHHHHHHHhc---C----------
Confidence 14577888889999999888742 1 11233334 778889998888632 1
Q ss_pred hhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH
Q 009665 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318 (529)
Q Consensus 239 ~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 318 (529)
.+.+..++.++++.|+..++..+ . .+.+..++.++++.|+..++..+
T Consensus 148 ----~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l----------- 194 (244)
T 1lrv_A 148 ----PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL----------- 194 (244)
T ss_dssp ----GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC-----------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC-----------
Confidence 12344667788999999887751 1 13445677889999999888652
Q ss_pred HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 009665 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (529)
Q Consensus 319 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~ 393 (529)
..+.|..++.++ ++.||..++..++ .+.|..+ .++++.|+..|...|+
T Consensus 195 -------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 135677788888 9999999998753 2344444 7779999998876543
No 112
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.02 E-value=0.19 Score=46.11 Aligned_cols=179 Identities=15% Similarity=0.176 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC
Q 009665 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (529)
Q Consensus 258 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 337 (529)
...+...| ++.-++.+.++-+++.+++..+......++.++....+..|-..+....-.. .- -.+.+|.++..+.-.
T Consensus 260 vtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~-L~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 260 IIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TP-LENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SC-CTTHHHHHHHHHHHC
T ss_pred HHHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-cc-ccccchHHHHHhccC
Confidence 33444444 4444556778889999999999999999999999999999988776433111 11 125788888888644
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-------ChhHHHHHHHHHHHHhc-------------
Q 009665 338 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-------EFEIKKEAAWAISNATS------------- 397 (529)
Q Consensus 338 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-------~~~v~~~a~~aL~nl~~------------- 397 (529)
.+.++.......|+|+.++.....+..+..|.++.|...+... +..-++.||..++|...
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~ 416 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTP 416 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCT
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecC
Confidence 4888999999999999999888888888999999999987642 33456667777776652
Q ss_pred CC--------CHHHHHHHHHcCChHHHHhccCCCC------HHHHHHHHHHHHHHH
Q 009665 398 GG--------SNEQIKFLVSQGCIKPLCDLLNCPD------PRIVTVCLEGLENIL 439 (529)
Q Consensus 398 ~~--------~~~~~~~l~~~~~l~~L~~lL~~~~------~~v~~~~l~aL~~l~ 439 (529)
+| +..+.-.+++.++++.|+.+|+.+. -+++..++..+.-++
T Consensus 417 NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl 472 (619)
T 3c2g_A 417 NGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL 472 (619)
T ss_dssp TSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred CCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence 11 1334445566678888888886432 245555555554443
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.02 E-value=0.047 Score=52.75 Aligned_cols=247 Identities=15% Similarity=0.085 Sum_probs=146.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHH
Q 009665 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248 (529)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 248 (529)
++...+..|+..|.....+-|..++. ++..++.++ .+.+..++..|...|..+|.+ ..+..+...|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 57899999999999999888876655 578899999 888899999999999999987 336788899999
Q ss_pred hhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC-ChhhHHHHHhcCCh
Q 009665 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQAL 327 (529)
Q Consensus 249 ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~l 327 (529)
+|+++++.-...+-++|..+...++. +.+..++..+..+++.+|..++..|..-... .......-++.-++
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 99999888777777777777655432 2334444444445678888888888554432 11111111222345
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHh------cCChhHHHHHHHHHHHH----h
Q 009665 328 PCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLL------NAEFEIKKEAAWAISNA----T 396 (529)
Q Consensus 328 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~------~~~~~v~~~a~~aL~nl----~ 396 (529)
..+.++|++- ...--.-...+|..+-. .++...+.+++ .+.+... ..|++.....+.++... +
T Consensus 180 ~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv~-----ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS 253 (507)
T 3u0r_A 180 TESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLVE-----LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS 253 (507)
T ss_dssp HHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHHH-----HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred HHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHHH-----HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 5566666544 32222223333433322 23443443332 2333221 12444444444444333 2
Q ss_pred cC-CCHHHHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhh
Q 009665 397 SG-GSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 397 ~~-~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~ 442 (529)
.+ .+.....++++. +++.+-.+-... ..+.+...|.++..+....
T Consensus 254 ~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~ 300 (507)
T 3u0r_A 254 KNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC 300 (507)
T ss_dssp TTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC
T ss_pred cCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCC
Confidence 22 245677776664 777666554321 1224555555555555443
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.96 E-value=0.04 Score=48.47 Aligned_cols=185 Identities=11% Similarity=0.139 Sum_probs=124.0
Q ss_pred ChHHHHHHHHHHHHhccCCchhHHHHHHh-CcHHHHHHh-------cCCCCc-----chHHHHHHHHHHhhcCChhhHHH
Q 009665 254 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPSP-----SVLIPALRTVGNIVTGDDMQTQC 320 (529)
Q Consensus 254 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~l-------L~~~~~-----~v~~~al~~L~~l~~~~~~~~~~ 320 (529)
+++-++.|+.-|+.=-+.-++....+..+ |.+..|++= +..+.- .-...|+..+..++. .++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 45567777776666444444444444443 655555432 222221 123456666666776 5556777
Q ss_pred HHhcCChHHHHHHhccCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665 321 IINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (529)
Q Consensus 321 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 395 (529)
++++++.-.|..+|.... -..+|-.+..+++.+.. ++++.+..+++.+++|..++.++.++.-.|.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 889899888999986542 24688899999999887 6788999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHc--------CChHHH-HhccCCCCHHHHHHHHHHHHHHHHh
Q 009665 396 TSGGSNEQIKFLVSQ--------GCIKPL-CDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 396 ~~~~~~~~~~~l~~~--------~~l~~L-~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
... .....|++.. .++..+ ..+.+.+++.+.+.+.++...+...
T Consensus 173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 863 3444444321 122222 2344567777777777777666543
No 115
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.91 E-value=0.019 Score=50.57 Aligned_cols=195 Identities=14% Similarity=0.132 Sum_probs=128.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhh--HHhhcCChHHHHHh-------hcCCC-C---hHHHHHHHHHH
Q 009665 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN--EVIQSGVVPRFIEF-------LSRDD-F---PQLQFEAAWAL 139 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~--~~i~~g~i~~Li~l-------L~~~~-~---~~v~~~a~~~L 139 (529)
+..++..|.+ ++.+..|+..|.+--.. .+... .+-.-|.+..|++= ++.+. + ..-...|+..|
T Consensus 5 i~qli~~L~~--p~~Re~AL~eLsk~Re~--~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl 80 (268)
T 2fv2_A 5 IYQWINELSS--PETRENALLELSKKRES--VPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL 80 (268)
T ss_dssp HHHHHHHTSS--TTTHHHHHHHHHHHTTT--CTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--chhHHHHHHHHHHhhhc--cccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence 4455655553 45688899988885332 22222 22355766666542 22221 0 12235666677
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhh-CCCchhHHHHHhcCChHHHHHHhccchh
Q 009665 140 TNIASGTSENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAK 213 (529)
Q Consensus 140 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~-~~~~~~~~~~~~~~~i~~l~~~l~~~~~ 213 (529)
..+|+ +++.+..++++.+.-.|..+|.. +.+.+|-.++..+|.+. .++++.-..+++.++++.+++.+ ..++
T Consensus 81 QcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim-e~Gs 158 (268)
T 2fv2_A 81 QCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM-ESGS 158 (268)
T ss_dssp HHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH-HHSC
T ss_pred HHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH-hhcc
Confidence 77887 89999999999987777777755 33678999999999988 46667778888999999999999 5556
Q ss_pred HHHHHHHHHHHhhhhcCCC--------CCchhhhhchHHHHHH-hhccCChHHHHHHHHHHHHhccCCc
Q 009665 214 LSMLRNATWTLSNFCRGKP--------QPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTN 273 (529)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~--------~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~~~L~~l~~~~~ 273 (529)
.-.+..|...+..+..++. ...+..+..++..++. +...+++.+..+++++...|+++..
T Consensus 159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r 227 (268)
T 2fv2_A 159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 227 (268)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence 6666667777666655431 1222333444444443 3346678889999999999988753
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.22 E-value=0.13 Score=44.98 Aligned_cols=145 Identities=17% Similarity=0.081 Sum_probs=104.7
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchhH
Q 009665 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCR 192 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~~ 192 (529)
.++....+.+++. .++|..|+..|+.. ...+ .+++.+.. +-..++..|++.+..+++.++. ..++
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3455556667776 79999999998887 3111 23566666 5556889999999999999984 3332
Q ss_pred HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (529)
Q Consensus 193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~ 272 (529)
..++.+.... .+.+..+++.++..+.--+.. + ........++|.|..+..+++.-|+..+.|.|..++...
T Consensus 139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 1455666666 888999999999887654433 1 112233557788888888889999999999999999988
Q ss_pred chhHHHHHH
Q 009665 273 NDKIQAVIE 281 (529)
Q Consensus 273 ~~~~~~~~~ 281 (529)
++.+..+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665555
No 117
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.19 E-value=1 Score=43.73 Aligned_cols=297 Identities=11% Similarity=0.055 Sum_probs=166.7
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009665 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (529)
Q Consensus 118 ~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (529)
.++...+ ++ +..+.-|+..|......-|+..+.. +..++.+..+++..||.+|+..|..+|.+ . .-..
T Consensus 33 ~Il~~~k-g~-~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k--- 100 (507)
T 3u0r_A 33 VILDGVK-GG-TKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR--- 100 (507)
T ss_dssp HHHHGGG-SC-HHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH---
T ss_pred HHHHhcC-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh---
Confidence 3444433 34 7889999999999998788876654 58889999999999999999999999987 2 2222
Q ss_pred cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC-CchhH
Q 009665 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKI 276 (529)
Q Consensus 198 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~-~~~~~ 276 (529)
+...|.++| +..++.-...+-++|..+...++ .+.+..+...+.+.++.+++.++..|..-... ..+..
T Consensus 101 --iaDvL~QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l 170 (507)
T 3u0r_A 101 --VADILTQLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVL 170 (507)
T ss_dssp --HHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred --HHHHHHHHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhc
Confidence 466788888 55555555666666666655432 34555555555567889999988888643311 11111
Q ss_pred HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHHh------ccCCchhHHHHHHHH
Q 009665 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWT 349 (529)
Q Consensus 277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL------~~~~~~~v~~~a~~~ 349 (529)
..-++.-++..+.+.|.+-...-....+.+|+.+-.... ...+. +++.+.... ... +.+.......+
T Consensus 171 ~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C 244 (507)
T 3u0r_A 171 TKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQC 244 (507)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHH
Confidence 122222345556666654433333444455544433222 22222 233333332 112 33333322222
Q ss_pred HH----HHhc--CCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhccC
Q 009665 350 IS----NITA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLN 421 (529)
Q Consensus 350 L~----nl~~--~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~ 421 (529)
+. -++. .+.....++.+. ++|.+-.+-... ..+.+...+.++..++.+++ .+....++. -+...|..++-
T Consensus 245 ~~~ALP~FS~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ymP 322 (507)
T 3u0r_A 245 TRQAVPLFSKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYMP 322 (507)
T ss_dssp HHHHGGGCBTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTSC
T ss_pred HHHHHHHhccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHCC
Confidence 22 2222 345555566554 888554433322 33478899999999988765 333322221 13334444432
Q ss_pred CCC-------------H----HHHHHHHHHHHHHHHhhhh
Q 009665 422 CPD-------------P----RIVTVCLEGLENILKAGEA 444 (529)
Q Consensus 422 ~~~-------------~----~v~~~~l~aL~~l~~~~~~ 444 (529)
.+. + ..++..+-++..+....+.
T Consensus 323 ~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~ 362 (507)
T 3u0r_A 323 LPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPD 362 (507)
T ss_dssp CCC--------------CCCHHHHHHHHHHHHHHHTTCTH
T ss_pred CCcccccccccccccCcccchhHHHHHHHHHHHHhhhChh
Confidence 111 1 2346667777777655443
No 118
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.73 E-value=1 Score=43.07 Aligned_cols=157 Identities=11% Similarity=0.112 Sum_probs=101.9
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC----------CCChHHHHHHHHHHHHH
Q 009665 74 PAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----------DDFPQLQFEAAWALTNI 142 (529)
Q Consensus 74 ~~l~~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~----------~~~~~v~~~a~~~L~~l 142 (529)
..++..|+++- .......+..|+.-+......-++.++ .+++..|+.+|.. ..+...+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34566666543 222334567777666654444577777 5677888888741 11257889999999999
Q ss_pred hcCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhc
Q 009665 143 ASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFN 209 (529)
Q Consensus 143 ~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~~~i~~l~~~l~ 209 (529)
.. +......++. ...+..|...|.++.+.++..++..|+.+|..+. .. ...++ +..-+..++..+.
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 98 5555555554 5788999999999999999999999999996543 21 22222 2334666777774
Q ss_pred cchhHHHHHHHHHHHhhhhcCCC
Q 009665 210 EHAKLSMLRNATWTLSNFCRGKP 232 (529)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~ 232 (529)
...+.+...++...+-.+....+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Confidence 44555666555555555555543
No 119
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.55 E-value=2.3 Score=47.75 Aligned_cols=298 Identities=8% Similarity=0.045 Sum_probs=167.0
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhc-CCCChHHHHHHHHHHHHHhcC----
Q 009665 73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASG---- 145 (529)
Q Consensus 73 l~~l~~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~-~~~~~~v~~~a~~~L~~l~~~---- 145 (529)
+..++..+.++ +...+.+|-..|.++-... ..+..+...|. .+.++.+|..|+..|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45555555554 6777888888887763221 13344444343 333389999999999987642
Q ss_pred -ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-c-hhHHHHHhcCChHHHHHHhccchhHHHHHH
Q 009665 146 -TSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDS-P-KCRDLVLSNGALMPLLAQFNEHAKLSMLRN 219 (529)
Q Consensus 146 -~~~~~~~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~-~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~ 219 (529)
+++.+.. +...++..+...... ....++...+.++..|+... + .. .+.++.++.++.. ++.....
T Consensus 82 l~~e~k~~-Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~~--~~~~~e~ 152 (1204)
T 3a6p_A 82 MSRLEKVY-LKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSKQ--GETQTEL 152 (1204)
T ss_dssp SCHHHHHH-HHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHHT--CHHHHHH
T ss_pred CCHHHHHH-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhcC--CHHHHHH
Confidence 2333333 333444544443221 45889999999999987431 1 11 1356667777632 3344666
Q ss_pred HHHHHhhhhcCC---CCCchh-------h----hhchHHHHHHhhcc-------------------CChHHHHHHHHHHH
Q 009665 220 ATWTLSNFCRGK---PQPLFE-------Q----TRPALPALERLIHS-------------------NDDEVLTDACWALS 266 (529)
Q Consensus 220 a~~~L~~l~~~~---~~~~~~-------~----~~~~l~~L~~ll~~-------------------~d~~v~~~a~~~L~ 266 (529)
++.+|..++... ...... . ...+++.+..++.. .+..+...++.++.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 777777776531 110000 0 11344444444432 12456777788877
Q ss_pred HhccCCchhHHHHHHhC--cHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh--hhHHHHHhc---CChHHHHHHhc----
Q 009665 267 YLSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCIINH---QALPCLLDLLT---- 335 (529)
Q Consensus 267 ~l~~~~~~~~~~~~~~~--~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~~---~~l~~L~~lL~---- 335 (529)
+....-+ ...+.+.. +++.++.++. ++.++..|+.||..++.... .....++.. ..+..++..+.
T Consensus 233 ~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~ 308 (1204)
T 3a6p_A 233 GYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG 308 (1204)
T ss_dssp TTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred HHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 6655433 23344433 6777777665 46789999999999997542 221112211 11223444432
Q ss_pred ---cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665 336 ---QNYKKSIKKEACWTISNITAGNVNQIQAIIE-----------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 336 ---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (529)
+..+.++.+..+.++..++. . ...++. .++++.++.+..+++..+-..++.....+...
T Consensus 309 ~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 309 GGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11145667777777777762 1 222221 13577888888888878877777766666554
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.46 E-value=0.69 Score=40.93 Aligned_cols=140 Identities=11% Similarity=0.140 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC----C------CChHHHHHHHHHHHHHhcCChhhHHHHHh-CCC
Q 009665 90 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVID-HGA 158 (529)
Q Consensus 90 ~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~ 158 (529)
..+..|+..+...+...++.+ ..+++..|+.+|.. + .+.+.+..++.||..+.. +......++. .+.
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~ 97 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG 97 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSH
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHH
Confidence 345555555544433446666 45667777776642 1 125778999999999998 5555555554 567
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (529)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 226 (529)
+..+...|.+++..++..++..|+.+|..+. .. ...++ +..-..+++..+..+.+.+.+..+...+-.
T Consensus 98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~ 177 (233)
T 2f31_A 98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 177 (233)
T ss_dssp HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 8999999999999999999999998885543 11 22222 222455566666434445555544444444
Q ss_pred hhcCC
Q 009665 227 FCRGK 231 (529)
Q Consensus 227 l~~~~ 231 (529)
+....
T Consensus 178 li~~~ 182 (233)
T 2f31_A 178 LITPA 182 (233)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 44443
No 121
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.39 E-value=0.28 Score=43.49 Aligned_cols=163 Identities=16% Similarity=0.130 Sum_probs=108.7
Q ss_pred hhhHHHHHhcCChHHHHHHhccC----------CchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCChh
Q 009665 315 DMQTQCIINHQALPCLLDLLTQN----------YKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFE 383 (529)
Q Consensus 315 ~~~~~~~~~~~~l~~L~~lL~~~----------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~ 383 (529)
..+.+.+ ..+++..|+.+|... .+.....+++.+|..+... ......++. .+.+..+...+.++.+.
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 3455555 345666666665321 1345677888888888765 566666664 55788888889888999
Q ss_pred HHHHHHHHHHHHhcCCC-----HHHHHHH------HHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 009665 384 IKKEAAWAISNATSGGS-----NEQIKFL------VSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNT 451 (529)
Q Consensus 384 v~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~ 451 (529)
++..|+..|..++...+ ......+ -+..-...+++.++ ..+.+.+..++..+..++...+....
T Consensus 112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~---- 187 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---- 187 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH----
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH----
Confidence 99999988888776432 1122222 12234666777777 45678888888888877766543321
Q ss_pred CccchHHHHHHhhchHHHHHHHhcCCCHHHHHHH
Q 009665 452 GGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 485 (529)
Q Consensus 452 ~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a 485 (529)
-...+..|...|..+.++.+....++++...-
T Consensus 188 --R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 188 --RVHIRSELMRLGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp --HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred --HHHHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence 12356667789999999999988888876553
No 122
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.33 E-value=0.13 Score=44.91 Aligned_cols=134 Identities=12% Similarity=0.085 Sum_probs=97.9
Q ss_pred cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-HhccCCchhHHHHHHHHHHHHhc-CCHHHH
Q 009665 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNYKKSIKKEACWTISNITA-GNVNQI 361 (529)
Q Consensus 284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~ 361 (529)
.++....+..++...+|..|+..|+.+ . .. ..+++.+.. +..++ ...|+..++.++..++. ..++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~-~~--------~~~L~~ir~~va~D~-~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S-KD--------KEILIFMRDEVSKDN-NWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T-TS--------HHHHHHHHHTGGGCS-CHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c-Cc--------HHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHhcCHH--
Confidence 345555666788889999999999988 3 11 135666776 44455 89999999999999885 3343
Q ss_pred HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcC----CCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHH
Q 009665 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 437 (529)
Q Consensus 362 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~----~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~ 437 (529)
..++.+.....+++..||+.|...+.-.+.. .+++. +++.|..+..+++.-|+..+.++|..
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~--------ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNE--------AIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH--------HHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHH--------HHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 1678888999999999999999887543322 12222 46667777788888999999999999
Q ss_pred HHHhhhh
Q 009665 438 ILKAGEA 444 (529)
Q Consensus 438 l~~~~~~ 444 (529)
+.+..+.
T Consensus 205 ~SK~~Pd 211 (240)
T 3l9t_A 205 ISKKFPD 211 (240)
T ss_dssp HHTTCHH
T ss_pred HhhhCHH
Confidence 8877654
No 123
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.05 E-value=0.83 Score=42.11 Aligned_cols=174 Identities=12% Similarity=0.064 Sum_probs=103.5
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCC----hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc
Q 009665 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA----VPIFVRLLSS-PTDDVREQAVWALGNVAGDSP 189 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~ 189 (529)
.+..+.++++.+. +.+.-++.++.-++. ++.....+.+.+. +..+...+.+ ..+..+-.++++++|+.....
T Consensus 104 ~l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~ 180 (304)
T 3ebb_A 104 QLQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA 180 (304)
T ss_dssp HHHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred HHHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence 3456666665553 566777777777665 5555555544322 2233444443 346678899999999987654
Q ss_pred hhHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhc-cCChHHHHHHHHH
Q 009665 190 KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIH-SNDDEVLTDACWA 264 (529)
Q Consensus 190 ~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~ 264 (529)
.+..+.. ....++..+. .+.+..++..++.++.|++... ..........++..+..++. ..|.+....++-+
T Consensus 181 -g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 181 -GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp -HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred -hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 5666554 2344444432 3346677888888888887642 11122223345555666665 3588999999999
Q ss_pred HHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009665 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294 (529)
Q Consensus 265 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 294 (529)
|+++...+.+..+..-..|+-..+-.....
T Consensus 258 LGtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 258 LGTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 999997765443322233544444444444
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.02 E-value=1.3 Score=40.79 Aligned_cols=185 Identities=16% Similarity=0.145 Sum_probs=111.4
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcC----ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 009665 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (529)
Q Consensus 286 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 361 (529)
..+.+++.-+ ...+.+++..+.-++. .+.....+.+.. ++..+...+.....+..+-.++.+++|+..+ +...
T Consensus 106 ~~l~kil~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~ 182 (304)
T 3ebb_A 106 QILWKAINCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQ 182 (304)
T ss_dssp HHHHHHHTSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHH
T ss_pred HHHHHHHcCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhH
Confidence 4455555333 2456677777666554 332332222211 2223334443332556788999999999987 4455
Q ss_pred HHHHH--cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC----CHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHH
Q 009665 362 QAIIE--AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG----SNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEG 434 (529)
Q Consensus 362 ~~l~~--~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~----~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~a 434 (529)
+.++. ..+++.+...+.+.+..++..++..+.|++... +.+.... ++..+..+++ ..|.+..-.++-|
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHhccCCHHHHHHHHHH
Confidence 55543 124444554444557889999999999998631 2222222 3344444443 4688999999999
Q ss_pred HHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009665 435 LENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 490 (529)
Q Consensus 435 L~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~ 490 (529)
|++++..+.. ..++....|..+.+..+... ..++|.+-|..+++
T Consensus 258 LGtL~~~~~~------------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 258 LGTLISDDSN------------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHHHHTTCHH------------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHHHHhCChh------------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 9999854322 35666667777777777654 56778888777765
No 125
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.82 E-value=2.3 Score=46.84 Aligned_cols=172 Identities=13% Similarity=0.105 Sum_probs=110.1
Q ss_pred hHHHHHHhccc---hhHHHHHHHHHHHhhhhc----CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009665 201 LMPLLAQFNEH---AKLSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (529)
Q Consensus 201 i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~ 273 (529)
+..+..++... .++.+...+..+++.|.. ..+......+..+...+.+.+...+.+-+..++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 44455555321 244556666666655543 332223333556666777777788888899999999998652
Q ss_pred hhHHHHHHhCcHHHHHHhcCC-----C--CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHH
Q 009665 274 DKIQAVIEAGVCPRLVELLRH-----P--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKE 345 (529)
Q Consensus 274 ~~~~~~~~~~~~~~L~~lL~~-----~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~ 345 (529)
..++.|.+++.. . ...++..|+++|.+++...+... -+.++.++. ...++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence 345666677632 1 23477889999999987554333 245677763 2338899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCH
Q 009665 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN 401 (529)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~ 401 (529)
|+..|.... .+.. .+..+...+.. .+..|.......|.+++....+
T Consensus 534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 998885432 2222 34455666665 4788999999999999887655
No 126
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.57 E-value=1.3 Score=49.66 Aligned_cols=282 Identities=11% Similarity=0.088 Sum_probs=155.9
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----CchhHHHHHhcCCh
Q 009665 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNGAL 201 (529)
Q Consensus 129 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~~~i 201 (529)
+..|.+|-..|..+.. ++ .....+...| .+.+..+|..|+.+|-+.... +++.+..+ +
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r---- 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-K---- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-H----
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-H----
Confidence 6778888888877654 22 1233333433 346789999999999887632 22222222 2
Q ss_pred HHHHHHhccc------hhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC---
Q 009665 202 MPLLAQFNEH------AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG--- 271 (529)
Q Consensus 202 ~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~--- 271 (529)
..++..+... .+..++..++.+++.++... |. .-..+++.++.++.+ ++.....++.+|..++..
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 2333433221 35677888888888888764 32 235778888888865 556677788888877632
Q ss_pred ----CchhHHH---HHHh---CcHHHHHHhcCC-------------------CCcchHHHHHHHHHHhhcCChhhHHHHH
Q 009665 272 ----TNDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCII 322 (529)
Q Consensus 272 ----~~~~~~~---~~~~---~~~~~L~~lL~~-------------------~~~~v~~~al~~L~~l~~~~~~~~~~~~ 322 (529)
...+... .+.. .++..+..++.. .+..+...++.++.+...--+. ..++
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence 1111111 1111 233333333422 1234566777777766553221 2233
Q ss_pred hcC--ChHHHHHHhccCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CCHHHHHHHHh--------cCChhHHHH
Q 009665 323 NHQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEA---GIIGPLVNLLL--------NAEFEIKKE 387 (529)
Q Consensus 323 ~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~l~~L~~~l~--------~~~~~v~~~ 387 (529)
+.. +++.+..++. +++++..|+.+|..++... ++....++.. ..+..++..+. +.+.++.+.
T Consensus 245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 332 6666666554 4578999999999999732 4433333321 11234455442 124566667
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH-----------cCChHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 009665 388 AAWAISNATSGGSNEQIKFLVS-----------QGCIKPLCDLLNCPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 388 a~~aL~nl~~~~~~~~~~~l~~-----------~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~ 440 (529)
.+..+..+.. .. ..++. .++++.++.++.+++..+...++..-..+++
T Consensus 322 l~~ll~~lg~----~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 322 LCQVLCALGN----QL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp HHHHHHHHHH----HH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH----HH-HHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 7777766652 11 11111 1346677777777776666666654444443
No 127
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.53 E-value=0.51 Score=45.26 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=110.4
Q ss_pred ChhhHHHHHhcCChHHHHHHhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCCh
Q 009665 314 DDMQTQCIINHQALPCLLDLLTQ----------NYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEF 382 (529)
Q Consensus 314 ~~~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~ 382 (529)
...+.+.+. .+++..|+.+|.. ..+..+...++.||..+.-. ......++. ...+..|...+.+..+
T Consensus 99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~ 176 (383)
T 3eg5_B 99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVP 176 (383)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCch
Confidence 345555555 4566777777631 11346677888888888765 556666764 5578999999998999
Q ss_pred hHHHHHHHHHHHHhcCCC-----HHHHHHH------HHcCChHHHHhccCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 009665 383 EIKKEAAWAISNATSGGS-----NEQIKFL------VSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGN 450 (529)
Q Consensus 383 ~v~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l~~~~~~~~~~~~ 450 (529)
.++..|+..|..++.... ......+ -+..-...++..|+. .+.+....++..|..++...+....
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~--- 253 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF--- 253 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH---
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH---
Confidence 999999999988887543 1112221 123447778888886 5778888888888877766543321
Q ss_pred CCccchHHHHHHhhchHHHHHHHhcCCCHHHHH
Q 009665 451 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE 483 (529)
Q Consensus 451 ~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~ 483 (529)
--..+..|...|..+.+..|....++++..
T Consensus 254 ---R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 254 ---RVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp ---HHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred ---HHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 123566677899999999998877877654
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.34 E-value=0.76 Score=50.63 Aligned_cols=134 Identities=15% Similarity=0.213 Sum_probs=83.2
Q ss_pred hHHHHHHhhcc----CChHHHHHHHHHHHHhcc----CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 009665 242 ALPALERLIHS----NDDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (529)
Q Consensus 242 ~l~~L~~ll~~----~d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~ 313 (529)
.+..+..++.+ .++.++..++.+++.++. ........++. .+...+.+.+...+..-+..++++|||+..
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 44455555553 356677777777776653 21110000111 233344555566667778889999999976
Q ss_pred ChhhHHHHHhcCChHHHHHHhcc------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc--CChhHH
Q 009665 314 DDMQTQCIINHQALPCLLDLLTQ------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIK 385 (529)
Q Consensus 314 ~~~~~~~~~~~~~l~~L~~lL~~------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~ 385 (529)
+ ..++.|..++.. .....++..|+|+|.+++...|..+ -+.++.++.+ .++++|
T Consensus 470 -p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvR 531 (1056)
T 1lsh_A 470 -P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELR 531 (1056)
T ss_dssp -G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHH
T ss_pred -h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHH
Confidence 2 234556666532 1135688999999999998766643 3456666643 488999
Q ss_pred HHHHHHHHHH
Q 009665 386 KEAAWAISNA 395 (529)
Q Consensus 386 ~~a~~aL~nl 395 (529)
..|+..|...
T Consensus 532 iaA~~~Lm~t 541 (1056)
T 1lsh_A 532 IRSCIVFFES 541 (1056)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.87 E-value=3.1 Score=39.88 Aligned_cols=140 Identities=11% Similarity=0.129 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC----C------CChHHHHHHHHHHHHHhcCChhhHHHHHh-CCCh
Q 009665 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVID-HGAV 159 (529)
Q Consensus 91 a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i 159 (529)
.+..|+..+...+...++.+. .+++..|+.+|.. . .+...+..++.||..+.. +......++. .+++
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHH
Confidence 455555555544334466665 4566667776641 1 125778999999999998 4555555554 5788
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (529)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 227 (529)
..+...|.++++.++..++..|+.+|..+. .. ...++ +..-+..++..+..+.+.+....++..+-.+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999988886543 21 22222 2234556676664445555555555555555
Q ss_pred hcCCC
Q 009665 228 CRGKP 232 (529)
Q Consensus 228 ~~~~~ 232 (529)
....+
T Consensus 183 v~~~~ 187 (386)
T 2bnx_A 183 ITPAE 187 (386)
T ss_dssp HTTCS
T ss_pred HCCCC
Confidence 55543
No 130
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.52 E-value=1.9 Score=41.38 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=105.4
Q ss_pred hhHHHHHhcCChHHHHHHhcc----C------CchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCChhH
Q 009665 316 MQTQCIINHQALPCLLDLLTQ----N------YKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEI 384 (529)
Q Consensus 316 ~~~~~~~~~~~l~~L~~lL~~----~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v 384 (529)
.+.+.+. .+++..|+.+|.. . .+.....+++.||..+.-. ......++. .+.+..+...+.+..+.+
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~ 116 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM 116 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 4444443 3555555555521 1 1345677888888888765 555666665 456888888888889999
Q ss_pred HHHHHHHHHHHhcCCCHH-----HHHHH------HHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 009665 385 KKEAAWAISNATSGGSNE-----QIKFL------VSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTG 452 (529)
Q Consensus 385 ~~~a~~aL~nl~~~~~~~-----~~~~l------~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~ 452 (529)
+..++..|..++....++ ....| -+..-...|++.+. ..+.+....++..+..++...+....
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~----- 191 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----- 191 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----
Confidence 999998888777654311 11111 12234566777776 45678888888888877776554321
Q ss_pred ccchHHHHHHhhchHHHHHHHhcCCCHHHHHH
Q 009665 453 GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 484 (529)
Q Consensus 453 ~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~ 484 (529)
-...+.-|...|..+.+..|....++++...
T Consensus 192 -R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 192 -RVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp -HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred -HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 1235677778899999999988888776543
No 131
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.57 E-value=5.4 Score=35.55 Aligned_cols=99 Identities=6% Similarity=0.067 Sum_probs=71.4
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009665 75 AMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (529)
Q Consensus 75 ~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 153 (529)
.+++.-+. .+ ..+...+...+.++-.. ++ . +. ..+++.++.+..+.+ .++|...+..|...+...++....
T Consensus 19 ~lln~A~~~~~-~~kl~~L~qa~el~~~~-dp-~--ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~- 90 (257)
T 3gs3_A 19 DWCNELVIASP-STKCELLAKVQETVLGS-CA-E--LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH- 90 (257)
T ss_dssp HHHHHHTTCCH-HHHHHHHHHHHHHHTTT-TG-G--GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-
T ss_pred HHHHHhhhcCc-HHHHHHHHHHHHHHHcc-CH-h--HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34443333 44 68888999999976543 22 1 22 247788888877766 899999999999988655544333
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009665 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185 (529)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 185 (529)
+++.|..++.++++.+...++.+.+++.
T Consensus 91 ----~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 91 ----VINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp ----HHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4688888999889999999999888874
No 132
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.21 E-value=10 Score=35.94 Aligned_cols=89 Identities=11% Similarity=0.157 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009665 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (529)
Q Consensus 86 ~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (529)
..+...+..++.++-.. ++. +. ..+++.++.+-.+.+ .++|...+..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps---Ll-~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT---LL-DNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG---GG-GGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH---HH-HHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46888888888875432 221 22 468999999998888 99999999999988875554433 246788889
Q ss_pred hCCCCHHHHHHHHHHHHHhh
Q 009665 166 LSSPTDDVREQAVWALGNVA 185 (529)
Q Consensus 166 L~~~~~~v~~~a~~~L~nl~ 185 (529)
|.++++.+...++.+.+++.
T Consensus 109 L~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 98889999999999988874
No 133
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=90.55 E-value=5.3 Score=38.07 Aligned_cols=235 Identities=14% Similarity=0.070 Sum_probs=116.2
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
....++...+..|+.++.++++.=|+..-.+|..+.+.-...|..+.. .+-..+.+.+.......-....+.++..+..
T Consensus 122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIin 200 (403)
T 3fga_B 122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 200 (403)
T ss_dssp HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence 334445556788999999999999999999998887544444443322 1223344444222222223345555555555
Q ss_pred CCCCCc-hhhhhchHHHHHHhhccCChH-HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009665 230 GKPQPL-FEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (529)
Q Consensus 230 ~~~~~~-~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L 307 (529)
+...+. .....-....|+.+-....-. --.....++..+...++.....++ ..|+..=-..+..-...-+.-+
T Consensus 201 Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~El 275 (403)
T 3fga_B 201 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNEL 275 (403)
T ss_dssp HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHHHHH
Confidence 542222 222223344455555444322 123344444444444443333222 2222221112222222334445
Q ss_pred HHhhcCCh-hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHH----hc
Q 009665 308 GNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA---GIIGPLVNLL----LN 379 (529)
Q Consensus 308 ~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~~l----~~ 379 (529)
..+...-+ ...+.+. ..++..+...+.++ ...|-+.|+....| +.+..++.. .++|.+...+ ..
T Consensus 276 e~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~~~~ 347 (403)
T 3fga_B 276 EEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSKT 347 (403)
T ss_dssp HHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55554332 2222222 24667778888888 77787777654421 122222211 1344444433 33
Q ss_pred C-ChhHHHHHHHHHHHHhcC
Q 009665 380 A-EFEIKKEAAWAISNATSG 398 (529)
Q Consensus 380 ~-~~~v~~~a~~aL~nl~~~ 398 (529)
. +..++..+..++.-+...
T Consensus 348 HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 348 HWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp CSCHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 3 678888888888777653
No 134
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=90.15 E-value=0.2 Score=29.68 Aligned_cols=39 Identities=33% Similarity=0.470 Sum_probs=26.5
Q ss_pred HHhhhccCCCCchHHHhhhHHHHHHHHHHhhHHHHHhhhh
Q 009665 11 VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRR 50 (529)
Q Consensus 11 ~~~~~~k~~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~ 50 (529)
+|...||+.....+..+||.+ ..+..|.+|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRRR-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHHH-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 578899994333444444444 688888889888877663
No 135
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.91 E-value=2 Score=38.99 Aligned_cols=133 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh--ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHH
Q 009665 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEACWTISNITAGNVNQIQAIIE--AGIIGPLV 374 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~l~~L~ 374 (529)
....|+..|--++..-....+ ++... .+.|..++ ... ++.+++.|+.+|+...+++|..+..+.+ ..++..++
T Consensus 44 ~le~aLD~L~ElSHDi~~G~K-I~~~e-f~lL~nL~~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYK-IITHE-FALLANLSLNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHH-HHHHH-HHHHHHHHHCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhH-HHhCc-HHHHHHHHhhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 456677777777664333333 33211 34444433 333 6779999999999999999999988876 34566666
Q ss_pred HHHhc-------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC--CHHHHHHHHHHHHHHHH
Q 009665 375 NLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILK 440 (529)
Q Consensus 375 ~~l~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~v~~~~l~aL~~l~~ 440 (529)
.-|.. ...-+++.-+.+|.-|+.... .+ ....+..|.+++... ++.++..++..+..++.
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 55543 233566777777777776531 11 134567777777666 89999999999998885
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=88.63 E-value=1.9 Score=34.33 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=52.8
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhh-chHHHHHHHhcCCC--------HHHH
Q 009665 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA-EGLEKIENLQSHDN--------TEIY 482 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-g~~~~l~~L~~~~~--------~~v~ 482 (529)
+++.|..-|...++.++..+|.+|..++..+.. .|...+.+. ..+..+.+....++ ..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~-----------~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR 118 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS-----------EFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR 118 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH-----------HHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH-----------HHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHH
Confidence 567788888888899999999999999876532 345555444 22333333333333 6799
Q ss_pred HHHHHHHHhhCCCCCC
Q 009665 483 EKAVKILETYWVEEDE 498 (529)
Q Consensus 483 ~~a~~il~~~~~~~~~ 498 (529)
.+|..+++-+|+.+..
T Consensus 119 ~~AkEl~~ll~d~~~~ 134 (140)
T 1vdy_A 119 ETAHETISAIFSEENG 134 (140)
T ss_dssp HHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHhCcCCC
Confidence 9999999999986654
No 137
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=88.21 E-value=6 Score=35.92 Aligned_cols=151 Identities=12% Similarity=0.081 Sum_probs=94.2
Q ss_pred chHHHHHHhhccC------ChHHHHHHHHHHHHhccCCchhHHHHH-HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 009665 241 PALPALERLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (529)
Q Consensus 241 ~~l~~L~~ll~~~------d~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~ 313 (529)
.-+..+..++.+. |.+....++..|..++..-......+- +..++..|+ +.....+.++..|.++|+.....
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence 3344455555554 445677788888877765433333232 334444444 33445567899999999999999
Q ss_pred ChhhHHHHHhc--CChHHHHHHhcc----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--Chh
Q 009665 314 DDMQTQCIINH--QALPCLLDLLTQ----N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFE 383 (529)
Q Consensus 314 ~~~~~~~~~~~--~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~ 383 (529)
++.....+.+. .++..+..-|.. . ....+.+.-+.+|..|...+.+. ....+..|.+++... ++.
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHH
Confidence 99888877642 233333322222 1 13456777778888887764211 134667788887777 889
Q ss_pred HHHHHHHHHHHHhc
Q 009665 384 IKKEAAWAISNATS 397 (529)
Q Consensus 384 v~~~a~~aL~nl~~ 397 (529)
+|..++..+..+..
T Consensus 176 ~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 176 LQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc
Confidence 99999998888763
No 138
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=86.41 E-value=12 Score=36.31 Aligned_cols=236 Identities=14% Similarity=0.057 Sum_probs=120.9
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
.....++...+..|+.++.++++.=|+....+|..+.+.-...|..+.. .+-..+.+.+.......-...++.+++.+.
T Consensus 154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIi 232 (449)
T 2npp_B 154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII 232 (449)
T ss_dssp TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 3444556667888999999999999999999998886544334444332 122334444433222233445666777776
Q ss_pred cCCCCC-chhhhhchHHHHHHhhccCChHH-HHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHH
Q 009665 229 RGKPQP-LFEQTRPALPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (529)
Q Consensus 229 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~ 306 (529)
.+...+ ......-....|+.+.....-.. -.....++..+...++.....+ +..|+..=-..+..-...-+.-
T Consensus 233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~e 307 (449)
T 2npp_B 233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNE 307 (449)
T ss_dssp SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHHH
Confidence 665222 22222333445555555443222 2233444444444443333322 2222222111222222234444
Q ss_pred HHHhhcCC-hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHHhc---
Q 009665 307 VGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN--- 379 (529)
Q Consensus 307 L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~l~~L~~~l~~--- 379 (529)
|..+.... +...+.+. ..++..+..++.++ ...|-+.|+....| + .+..++. ..++|.++..|..
T Consensus 308 leeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~-~i~~li~~n~~~IlPii~p~L~~~s~ 379 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSK 379 (449)
T ss_dssp HHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----H-HHHHHHHhchhhhHHhhHHHHHHHHH
Confidence 55555432 22333222 24677788888887 77888777654432 1 1112222 1145666665532
Q ss_pred -C-ChhHHHHHHHHHHHHhcC
Q 009665 380 -A-EFEIKKEAAWAISNATSG 398 (529)
Q Consensus 380 -~-~~~v~~~a~~aL~nl~~~ 398 (529)
. +..++..|..++.-+...
T Consensus 380 ~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 380 THWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp CCSSTTHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHHH
Confidence 2 567888888777766543
No 139
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.47 E-value=3.5 Score=33.89 Aligned_cols=73 Identities=14% Similarity=0.235 Sum_probs=54.8
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009665 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 490 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~ 490 (529)
++..|..-|.+.++.++..+|..|..+++.+.. .|...+.....++.+..+... .+++|++++..+|.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~-----------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~ 121 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK-----------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMV 121 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH-----------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-----------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 355666667788999999999999998877532 356666666777777777544 67899999999998
Q ss_pred hhCCC
Q 009665 491 TYWVE 495 (529)
Q Consensus 491 ~~~~~ 495 (529)
.+-..
T Consensus 122 ~W~~~ 126 (163)
T 1x5b_A 122 EWSEE 126 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87553
No 140
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=83.00 E-value=2.4 Score=33.93 Aligned_cols=72 Identities=8% Similarity=0.048 Sum_probs=56.8
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 009665 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~ 440 (529)
.+..+..-|.++++.++..|+..|-.++.+++......+....++..|..++...++.|+..++..+.....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 455566677888999999999999999998887776666666677777777777888999999888876654
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=82.07 E-value=3.6 Score=33.17 Aligned_cols=71 Identities=8% Similarity=-0.072 Sum_probs=57.5
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHH
Q 009665 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL 439 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~ 439 (529)
.+..|..-+.++++.++..|+..|-.+..+++..+...+....++..|..++.. .++.|+..++..|....
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 355666677889999999999999999999887887777777888889988864 46788888887776554
No 142
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=81.86 E-value=4 Score=32.94 Aligned_cols=72 Identities=8% Similarity=-0.050 Sum_probs=58.8
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHHH
Q 009665 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILK 440 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~~ 440 (529)
.+..|..-+.+.++.++..|+..|-.+..++...+...+....++..|..++.. .++.|+..++..|.....
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 455666777888999999999999999999888877777777888888888863 577899998888887654
No 143
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.56 E-value=3 Score=34.33 Aligned_cols=71 Identities=4% Similarity=-0.014 Sum_probs=55.1
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHHHHHHHHHHHH
Q 009665 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENIL 439 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l~ 439 (529)
.+..|..-|.++++.++..|+..|-.+..++...+...+....++..|..++.. .++.|+..++..|....
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 345566677888999999999999999999887777666666777777777764 66788888887666544
No 144
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=81.28 E-value=32 Score=33.33 Aligned_cols=238 Identities=15% Similarity=0.138 Sum_probs=122.9
Q ss_pred hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 009665 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVA 185 (529)
Q Consensus 107 ~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~ 185 (529)
.+..++..++-.|+.++.+++ +.-|...-.+|..|-..-...|..+.. .+-..+.+++.. ....-....+.+++.+.
T Consensus 155 ~k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIi 232 (449)
T 2npp_B 155 AKKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII 232 (449)
T ss_dssp GGGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 456677788899999999998 888888888888776644445544432 222445555533 22222234666777776
Q ss_pred CCC-----chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHH
Q 009665 186 GDS-----PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 260 (529)
Q Consensus 186 ~~~-----~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~ 260 (529)
.+- ++.+..+ ...|+.+.....-...-.....++..++..+|.. ...++..|++.=-..+..-...
T Consensus 233 nGfa~PLKeehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L----~~~vi~~LLk~WP~tns~Kevl 303 (449)
T 2npp_B 233 NGFALPLKEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTL----TEPVVMALLKYWPKTHSPKEVM 303 (449)
T ss_dssp SSCCSSCCHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGG----HHHHHHHHHHTCCSSCHHHHHH
T ss_pred hccCCCCcHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHh----HHHHHHHHHHhCCCCCchHHHH
Confidence 331 1221111 1222223211111112233445555544433211 1223333333222334333333
Q ss_pred HHHHHHHhccCC-chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh---cCChHHHHHHhcc
Q 009665 261 ACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQALPCLLDLLTQ 336 (529)
Q Consensus 261 a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~---~~~l~~L~~lL~~ 336 (529)
-+.-|..+...- +.....+. ..++..+..++.+++..|...|+..+.| +.... ++. ..++|.+...|..
T Consensus 304 FL~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~-li~~n~~~IlPii~p~L~~ 376 (449)
T 2npp_B 304 FLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMS-LISDNAAKILPIMFPSLYR 376 (449)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHH-HHHTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHH-HHHhchhhhHHhhHHHHHH
Confidence 444444444332 22222222 2567778888888888888888766533 21111 221 1345666665522
Q ss_pred ----CCchhHHHHHHHHHHHHhcCCHHHHH
Q 009665 337 ----NYKKSIKKEACWTISNITAGNVNQIQ 362 (529)
Q Consensus 337 ----~~~~~v~~~a~~~L~nl~~~~~~~~~ 362 (529)
.=+..++..|..++.-+...++....
T Consensus 377 ~s~~HWn~~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 377 NSKTHWNKTIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp CTTCCSSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHCHHHHH
Confidence 11467899999999888877666443
No 145
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=80.98 E-value=3.6 Score=32.88 Aligned_cols=72 Identities=14% Similarity=0.272 Sum_probs=53.6
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009665 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 491 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~ 491 (529)
++..|..-|.+.++.++..++..|..+++.+.. .|...+.....++.+..+....+++|+++...++..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~-----------~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~ 111 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK-----------IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE 111 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-----------HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH-----------HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 355566667778899988999988888876532 255556556667777777666789999999999987
Q ss_pred hCC
Q 009665 492 YWV 494 (529)
Q Consensus 492 ~~~ 494 (529)
+-.
T Consensus 112 W~~ 114 (140)
T 3ldz_A 112 WTD 114 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=80.87 E-value=5.8 Score=32.89 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=55.8
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhc------CCCHHHHHHH
Q 009665 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA 485 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~------~~~~~v~~~a 485 (529)
++..|..-+.+.++.++..+|..|..+++.+.. .|...+.....++.|..+.. ..+.+|++++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~-----------~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 119 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR-----------RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV 119 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-----------HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-----------HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence 355666777789999999999999999887543 25666777777888888764 3468999999
Q ss_pred HHHHHhhCCC
Q 009665 486 VKILETYWVE 495 (529)
Q Consensus 486 ~~il~~~~~~ 495 (529)
..+|..+-..
T Consensus 120 l~li~~W~~~ 129 (171)
T 1juq_A 120 IELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999877543
No 147
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=80.63 E-value=2.4 Score=34.25 Aligned_cols=74 Identities=14% Similarity=-0.002 Sum_probs=58.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCC-----CChHHHHHHHHHHHHHhc
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~-----~~~~v~~~a~~~L~~l~~ 144 (529)
+.+..+.+.|++.++.++..|+..|-.+..+-......++....++..|++++... .++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999988765444456666778899999998741 237899988888877765
No 148
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=79.26 E-value=2.9 Score=33.77 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=58.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC------CCChHHHHHHHHHHHHHhc
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR------DDFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~------~~~~~v~~~a~~~L~~l~~ 144 (529)
+.+..|.+.|++.++.+++.|+..|-.+..+-......++....++..|++++.. .+ +.++..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999988876544445666677788899999864 34 7899998888887765
No 149
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=78.90 E-value=12 Score=35.56 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=77.3
Q ss_pred CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhh-
Q 009665 368 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK- 446 (529)
Q Consensus 368 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~- 446 (529)
++++.++.+-.+.+.++|+.++..|...+.. ..+... .+++.|..+|.++++.|...+..+..+++...-..-
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888999888888999999999999888763 223322 257788888899999999888887777764321110
Q ss_pred hcCCCC-ccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009665 447 NMGNTG-GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 493 (529)
Q Consensus 447 ~~~~~~-~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 493 (529)
...+.. .....-..+. ..-+.|..+..+.|.-|+-.|.+.+++..
T Consensus 137 ~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 000000 0001111221 22455666778899999999999888855
No 150
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=78.48 E-value=36 Score=30.23 Aligned_cols=129 Identities=12% Similarity=0.049 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhccC-CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh
Q 009665 256 EVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334 (529)
Q Consensus 256 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 334 (529)
+.+...+.-...+.-+ ++.... .+++.++.+..+.+..++...+..+...+....+... .+++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3555555555554433 222222 4556666666566667777777777776654333222 3456666777
Q ss_pred ccCCchhHHHHHHHHHHHHhc--------CCH-----HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009665 335 TQNYKKSIKKEACWTISNITA--------GNV-----NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (529)
Q Consensus 335 ~~~~~~~v~~~a~~~L~nl~~--------~~~-----~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (529)
.++ ++.+.+.+..+.+++-. .+. +.....+. .+-..+++++.+++..+|..|...+..+.
T Consensus 100 ~d~-d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~-~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 100 RDN-SAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS-LIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TCS-CHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH-HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 665 77777777666555432 111 11111111 13345566666777888888887777655
No 151
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=78.24 E-value=4.1 Score=33.78 Aligned_cols=71 Identities=8% Similarity=-0.030 Sum_probs=56.5
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHH
Q 009665 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL 439 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~ 439 (529)
.+..|..-+.++++.++..|+..|-.+..+++..+...+....++..|+.++.. .++.|+..++..|....
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345677778889999999999999999998877777777777788888888862 45788888888777554
No 152
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=76.40 E-value=9.6 Score=41.46 Aligned_cols=188 Identities=11% Similarity=0.054 Sum_probs=111.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc---chhHHHHHHHHHHHhhhhcCC-CC
Q 009665 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRGK-PQ 233 (529)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~-~~ 233 (529)
++.-|+++-.+...+||..|-.+|......-+..+.. +++.+++.|.. +.+.+-.+-|+++|..-.... -.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 3567777778899999999999999988765555544 46788888854 345555666666655111110 12
Q ss_pred CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC--------------------c----hhHHH-----------
Q 009665 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT--------------------N----DKIQA----------- 278 (529)
Q Consensus 234 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~--------------------~----~~~~~----------- 278 (529)
........+++.|++....+.++|+..+-.+...+...- + ..+..
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 233445677777777776666666554444433332210 0 00010
Q ss_pred HHH--hCcHHHHHHhc-CCCC--cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009665 279 VIE--AGVCPRLVELL-RHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (529)
Q Consensus 279 ~~~--~~~~~~L~~lL-~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 353 (529)
..+ .++...++..+ .... +.....++++|.++....+. .....++..+++.+.++ .+.+|..|..++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 000 13344444555 3345 77778878886666543321 12234567788888888 899999999888666
Q ss_pred hc
Q 009665 354 TA 355 (529)
Q Consensus 354 ~~ 355 (529)
..
T Consensus 364 l~ 365 (997)
T 1vsy_5 364 CN 365 (997)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 153
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=75.50 E-value=13 Score=40.53 Aligned_cols=221 Identities=14% Similarity=0.128 Sum_probs=118.0
Q ss_pred hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHH-----HhccCCchh
Q 009665 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS-----YLSDGTNDK 275 (529)
Q Consensus 201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~-----~l~~~~~~~ 275 (529)
+..|+.+- -+.-.+++..|-.+|......-+......+..++..|-.-+...+.+-.+.++.+|. ..+..+-..
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~ 213 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKD 213 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHH
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHH
Confidence 34455543 455678888888888887766544444344444444444334557777788887765 111111111
Q ss_pred HHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH-HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHh
Q 009665 276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (529)
Q Consensus 276 ~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 354 (529)
-..+++.|+.....+++.++..+-.+...+..+...-. -.+++...+ .-+..+ +..+- .+........
T Consensus 214 -----~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~-d~~i~-~~~~~~~~~~ 282 (997)
T 1vsy_5 214 -----IGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPP-DGTIN-LQVEAVKLAK 282 (997)
T ss_dssp -----HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCS-CSSTT-SHHHHHHHHT
T ss_pred -----HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCC-cHHHH-HHHHHHHHHH
Confidence 12466777777777888888777666555554321000 001111111 122222 22221 1222221111
Q ss_pred cCCHHHHHHHHH--cCCHHHHHHHHhc-CC--hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHH
Q 009665 355 AGNVNQIQAIIE--AGIIGPLVNLLLN-AE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 429 (529)
Q Consensus 355 ~~~~~~~~~l~~--~~~l~~L~~~l~~-~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~ 429 (529)
...+....+ .++...|+++.++ .+ .+....++..|.++...-+.. ....++..+.+.+.+++|.++.
T Consensus 283 ---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp~~R~ 354 (997)
T 1vsy_5 283 ---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHPEIIH 354 (997)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCHHHHH
Confidence 111111111 2355566677633 36 788888888877776432111 0112456677888899999999
Q ss_pred HHHHHHHHHHHh
Q 009665 430 VCLEGLENILKA 441 (529)
Q Consensus 430 ~~l~aL~~l~~~ 441 (529)
.+..++..++..
T Consensus 355 ~a~~~l~~il~~ 366 (997)
T 1vsy_5 355 LVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.03 E-value=2.3 Score=37.25 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=55.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~ 144 (529)
+.+..|.+.|++.++.+++.|+..|-.++.+-......++....++..|++++....++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999998887664333455555667777888887654447888888888877664
No 155
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=71.44 E-value=1e+02 Score=32.44 Aligned_cols=111 Identities=10% Similarity=0.062 Sum_probs=66.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--chhHHHHHHHHHHHhhhhcCC--CC
Q 009665 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGK--PQ 233 (529)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~~a~~~L~~l~~~~--~~ 233 (529)
+.|.+...+.+.+..+...+..++.++|.-.|.+++.++. +++..+..-|.. -..+.-...++.+|..+++.- ..
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 3566667778889999999999999999766644444322 233333333422 133444555666666655422 11
Q ss_pred CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009665 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (529)
Q Consensus 234 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~ 269 (529)
.-...+..++..++.-+..+|+.--..++..+..++
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 112344566666667777788877666777666554
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.67 E-value=3.7 Score=35.76 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=54.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009665 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~ 144 (529)
+.+..|.+.|++.++.++..|+..|-.++.+-......++....++..|+.++.+..++.++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999888654233345555666788888887654447888888777766654
No 157
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.70 E-value=15 Score=31.97 Aligned_cols=72 Identities=13% Similarity=0.298 Sum_probs=52.4
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCCCHHHHHHHHHHHH
Q 009665 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILE 490 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~~~~v~~~a~~il~ 490 (529)
++..|..-|.+.++.++..+|..|..+++.+.. .|...+....+++.|..+. ...+++|++++..+|.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~-----------~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~ 114 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ-----------TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQ 114 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH-----------HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch-----------HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 355566667789999999999999998877643 2455555566666666553 4567899999999998
Q ss_pred hhCC
Q 009665 491 TYWV 494 (529)
Q Consensus 491 ~~~~ 494 (529)
.+-.
T Consensus 115 ~W~~ 118 (226)
T 3zyq_A 115 AWAH 118 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.98 E-value=16 Score=31.56 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=51.1
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCCCHHHHHHHHHHHH
Q 009665 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILE 490 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~~~~v~~~a~~il~ 490 (529)
++..|..-|.+.++.++..+|..|..+++.+.. +|...+.....++.+..+. ...+.+|++++..+++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~-----------~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~ 111 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA-----------PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ 111 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-----------HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH-----------HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 344556666789999999999999999887543 2445555555666666653 3567899999988888
Q ss_pred hhCC
Q 009665 491 TYWV 494 (529)
Q Consensus 491 ~~~~ 494 (529)
.+-.
T Consensus 112 ~W~~ 115 (220)
T 1dvp_A 112 TWAY 115 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 159
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=65.07 E-value=31 Score=32.70 Aligned_cols=192 Identities=13% Similarity=0.053 Sum_probs=93.6
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
...++...+..|+.++.++++.=|+....+|..+.+.-...|..+.. .+-..+.+.+.......-...+++++..+..+
T Consensus 168 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIng 246 (392)
T 2jak_A 168 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 246 (392)
T ss_dssp TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 34445567788999999999999999999998876544444443322 22334555553333333344566666666666
Q ss_pred CCCC-chhhhhchHHHHHHhhccCChH-HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009665 231 KPQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (529)
Q Consensus 231 ~~~~-~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~ 308 (529)
...+ ......-....|+.+.....-. --.....++..+...++.....+ +..|+..=-..+..-...-+.-|.
T Consensus 247 fa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 247 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHH
Confidence 5222 2222222334445554433211 12233344444443333332322 222222211122222223333444
Q ss_pred HhhcCC-hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665 309 NIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (529)
Q Consensus 309 ~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 350 (529)
.+.... +...+.+. ..++..+..++.++ ..+|.+.|+...
T Consensus 322 eiLe~~~~~~f~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w 362 (392)
T 2jak_A 322 EILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW 362 (392)
T ss_dssp HHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 444332 22222222 24566677777777 777777765443
No 160
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=60.01 E-value=28 Score=27.22 Aligned_cols=94 Identities=18% Similarity=0.118 Sum_probs=59.8
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 009665 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 448 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~ 448 (529)
++|.|+..|++.+..+...++..|...- .. +++.+.+.|.+.|..= ..++|..++..-...
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~W---~ywil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIMW---KYWVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHHH---HHHHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChHH---HHHHHHHHHHcCCHH---
Confidence 6788999999999999888887777642 12 3445555666677553 334444444322111
Q ss_pred CCCCccchHHHHHHhhchHHHHHHHhcC-----CCHHHHHHHHHHHHhhCC
Q 009665 449 GNTGGVNLFAQAIDDAEGLEKIENLQSH-----DNTEIYEKAVKILETYWV 494 (529)
Q Consensus 449 ~~~~~~~~~~~~i~~~g~~~~l~~L~~~-----~~~~v~~~a~~il~~~~~ 494 (529)
....+ ...|+++... ...++.+.|..+|++||.
T Consensus 93 --------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~ 130 (134)
T 3ut4_A 93 --------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYP 130 (134)
T ss_dssp --------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC-
T ss_pred --------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcc
Confidence 12222 3456777655 457899999999999986
No 161
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=59.79 E-value=28 Score=28.21 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=50.9
Q ss_pred ChHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHH-HHHHh---cCCCHHHHHHHH
Q 009665 412 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQ---SHDNTEIYEKAV 486 (529)
Q Consensus 412 ~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-l~~L~---~~~~~~v~~~a~ 486 (529)
++..|..-|+ ..++.++..++..|..+++.+.. .|...+.....++. +..+. .....+|++++.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~-----------~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil 122 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH-----------RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVL 122 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH-----------HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH-----------HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 3445566665 57888999999999988877532 35666666667776 55554 234578999999
Q ss_pred HHHHhhCC
Q 009665 487 KILETYWV 494 (529)
Q Consensus 487 ~il~~~~~ 494 (529)
.+|..+-.
T Consensus 123 ~li~~W~~ 130 (157)
T 1elk_A 123 NLIQSWAD 130 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 162
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=58.95 E-value=21 Score=28.92 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=53.6
Q ss_pred CHHHHHHHHh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH-HHhccCC---CCHHHHHHHHHHHHHHHH
Q 009665 369 IIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-LCDLLNC---PDPRIVTVCLEGLENILK 440 (529)
Q Consensus 369 ~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL~~---~~~~v~~~~l~aL~~l~~ 440 (529)
.+..|..-|. .+++.++..|+..|-.+..++.......+....++.. |+.++.. ++..|+..++..|.....
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3455666676 4788999999999999999988777777777777776 6777742 345788888877776543
No 163
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=56.29 E-value=32 Score=27.21 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=50.6
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC-ChHHHHhccCCCC--------HHHHHHHHHHHHHHH
Q 009665 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG-CIKPLCDLLNCPD--------PRIVTVCLEGLENIL 439 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~-~l~~L~~lL~~~~--------~~v~~~~l~aL~~l~ 439 (529)
+++.|..-|...++.++..|+.+|..|+..+++.+...+.+.- .|..+.+.--.++ ..|+..+-+++..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 5667888888889999999999999999999988888776542 2333332222222 347777777776655
Q ss_pred Hh
Q 009665 440 KA 441 (529)
Q Consensus 440 ~~ 441 (529)
..
T Consensus 130 d~ 131 (140)
T 1vdy_A 130 SE 131 (140)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 164
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=51.54 E-value=53 Score=29.05 Aligned_cols=102 Identities=14% Similarity=0.063 Sum_probs=62.0
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-------chhHHHHHHHHHHHhhhhcCC--CCCch
Q 009665 166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------HAKLSMLRNATWTLSNFCRGK--PQPLF 236 (529)
Q Consensus 166 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~l~~~~--~~~~~ 236 (529)
+.+.++..+-.++++++|+..+....+..+........++..+.. ..+..++..++..+.|++-.. ....
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~- 177 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD- 177 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC-
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch-
Confidence 334567889999999999987766335555443234444544311 235667777777888877642 1111
Q ss_pred hhhhchHHHHHHhhc---------cCChHHHHHHHHHHHHhccC
Q 009665 237 EQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 237 ~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~L~~l~~~ 271 (529)
......++.++. ..|++....++-+++++...
T Consensus 178 ---~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 178 ---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp ---TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 122233344333 23778888999999988753
No 165
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=51.43 E-value=1.2e+02 Score=26.22 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=79.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcc-CCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHH-HHHHHHhhcCChhhHHHH
Q 009665 245 ALERLIHSNDDEVLTDACWALSYLSD-GTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPA-LRTVGNIVTGDDMQTQCI 321 (529)
Q Consensus 245 ~L~~ll~~~d~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a-l~~L~~l~~~~~~~~~~~ 321 (529)
.+..+..++..+.+..++..+..... ..++ .++.+-.++. .+++.+.... ..+++.+....+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~----- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE----- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----
Confidence 44455566666677777666654322 1111 1222233332 3455555443 3555555543332
Q ss_pred HhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 009665 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (529)
Q Consensus 322 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (529)
...+.+...+.++ +.-+++.|+-.+..... .+++. .++.+...+.+++.-|++.+.|+|..+... .
T Consensus 131 ---~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~~--------~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~ 197 (232)
T 3jxy_A 131 ---LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEEL--------LFWIIGQLHSSKEFFIQKAIGWVLREYAKT-N 197 (232)
T ss_dssp ---GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ---HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-C
Confidence 2456788888888 77788777655422221 22221 334455667788999999999999999987 4
Q ss_pred HHHHHHHHH
Q 009665 401 NEQIKFLVS 409 (529)
Q Consensus 401 ~~~~~~l~~ 409 (529)
++....+++
T Consensus 198 p~~v~~fl~ 206 (232)
T 3jxy_A 198 PDVVWEYVQ 206 (232)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 166
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=51.40 E-value=1.2e+02 Score=26.05 Aligned_cols=135 Identities=9% Similarity=-0.032 Sum_probs=78.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhhHHHHHh
Q 009665 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIIN 323 (529)
Q Consensus 245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 323 (529)
.+..+..++.-+.+..++..+......... ..++.+-.++. -+++.+....+.+++.++...+..
T Consensus 59 ~~~~L~~s~~~E~r~la~~~l~~~~~~~~~--------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~------ 124 (220)
T 2b6c_A 59 EIEAYYQKTEREYQYVAIDLALQNVQRFSL--------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE------ 124 (220)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHTGGGCCH--------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG------
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHhhCCH--------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH------
Confidence 344555566667777777777665422111 11222233333 355666666556777776544322
Q ss_pred cCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHH
Q 009665 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402 (529)
Q Consensus 324 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (529)
..+.+...+.++ +.-+|+.|+-++..... +.++. +++.+-..+.+++.-|++.+.|+|..+... +++
T Consensus 125 --~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~ 192 (220)
T 2b6c_A 125 --LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQ 192 (220)
T ss_dssp --HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHH
T ss_pred --HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHH
Confidence 345677888888 77777777654422221 22221 233334466677889999999999999887 444
Q ss_pred HHH
Q 009665 403 QIK 405 (529)
Q Consensus 403 ~~~ 405 (529)
...
T Consensus 193 ~v~ 195 (220)
T 2b6c_A 193 WVE 195 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 167
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=50.69 E-value=50 Score=31.28 Aligned_cols=187 Identities=13% Similarity=0.084 Sum_probs=96.7
Q ss_pred HHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCC-
Q 009665 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN- 357 (529)
Q Consensus 279 ~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~- 357 (529)
.++...+..|+.++.++++.-|.....+|.++-......+. .+...+-..+...+.......--.+...+++.+..|.
T Consensus 170 ~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa 248 (392)
T 2jak_A 170 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 248 (392)
T ss_dssp TSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC
T ss_pred hCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccC
Confidence 44556788899999999988888877777666543333332 2222333445555544323334456777777777652
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHhcCCh-hHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHH
Q 009665 358 ----VNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL 432 (529)
Q Consensus 358 ----~~~~~~l~~~~~l~~L~~~l~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l 432 (529)
.+....+.. -++| +.+.... ..-..-.+++..+... ++..... ++..|+..--..++.=...-+
T Consensus 249 ~PLKeehk~Fl~~-vLlP----Lhk~~~l~~y~~qL~ycv~qf~eK-Dp~L~~~-----vi~~LLk~WP~tns~KevlFL 317 (392)
T 2jak_A 249 LPLKEEHKIFLLK-VLLP----LHKVKSLSVYHPQLAYCVVQFLEK-DSTLTEP-----VVMALLKYWPKTHSPKEVMFL 317 (392)
T ss_dssp SSCCHHHHHHHHH-TTGG----GGTSGGGGGTHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHSSCSSCCTTHHHHH
T ss_pred CCCcHHHHHHHHH-HhHh----hccCCcHHHhHHHHHHHHHHHHhc-CchhHHH-----HHHHHHHhCCCCCchHHHHHH
Confidence 343333322 1222 2332211 1223444555544433 2222222 344454444333332222344
Q ss_pred HHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHH
Q 009665 433 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489 (529)
Q Consensus 433 ~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il 489 (529)
.-|..++..-+.. .+...... ....|.....+++-.|.++|..++
T Consensus 318 ~eleeiLe~~~~~----------~f~~i~~~--lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 318 NELEEILDVIEPS----------EFVKIMEP--LFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHTCCHH----------HHHHHHHH--HHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHH----------HHHHHHHH--HHHHHHHHHcCCcHHHHHHHHHHh
Confidence 5556666543321 23333322 356677778889999999987654
No 168
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=48.26 E-value=58 Score=25.87 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=55.8
Q ss_pred HHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhc
Q 009665 402 EQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 475 (529)
Q Consensus 402 ~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~ 475 (529)
.....+++.|++..+-..|.- ++..++...+.+|..+= .. .+.+.++|.-..+..|..
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP-I~---------------~e~Lk~SglGkvv~~l~k 115 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK-IH---------------KEHLVTSGVGKIVYFYSI 115 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-CC---------------HHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC-CC---------------HHHhhcCCCCcchhhhhc
Confidence 345667888888888888762 45678888888888651 11 566778887777777876
Q ss_pred C--CCHHHHHHHHHHHHhhC
Q 009665 476 H--DNTEIYEKAVKILETYW 493 (529)
Q Consensus 476 ~--~~~~v~~~a~~il~~~~ 493 (529)
| +.++++..|..+++++-
T Consensus 116 ~~~et~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 116 NPKESKEVRASAKALVQKWT 135 (145)
T ss_dssp CTTSCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHH
Confidence 5 45679999999998863
No 169
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=47.28 E-value=67 Score=30.05 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-
Q 009665 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 209 (529)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~- 209 (529)
+.-++.+|+-++...+. .+.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~~~~-------~~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCCh-------HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 55677777776663321 12233333 3344567889999999999998776533334322112334444431
Q ss_pred ------cchhHHHHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhhc---------cCChHHHHHHHHHHHHhccC
Q 009665 210 ------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 210 ------~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~L~~l~~~ 271 (529)
...+..++..++.++.|++... .... ...++.+..++. ..|++....++-+|++|...
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1235567777777888877642 1111 233344555554 35889999999999999853
No 170
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=45.28 E-value=98 Score=29.63 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-
Q 009665 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 209 (529)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~- 209 (529)
+.-++.+|+-++...+.. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 555777777666533211 2233333 3344567889999999999998776533334332222445555542
Q ss_pred ------cchhHHHHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhhc---------cCChHHHHHHHHHHHHhccCC
Q 009665 210 ------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 272 (529)
Q Consensus 210 ------~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~L~~l~~~~ 272 (529)
...+..++..++.++.|++... .... ...++.+..++. ..|++....++-+|++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235567777777888877642 1111 233344555554 358899999999999998543
No 171
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=45.20 E-value=4.6 Score=37.29 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=29.1
Q ss_pred ccHHHhhhccCCCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhc
Q 009665 8 RTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREG 52 (529)
Q Consensus 8 ~~~~~~~~~k~~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~ 52 (529)
...+|+..||+.....+.. +|++...+..|++|.+.+...|+..
T Consensus 28 a~HPR~sqyK~k~~~~~Q~-~RR~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQS-ERRRRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCSCC-HHHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhhHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4468999999854444433 4555667778889999999999864
No 172
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=43.59 E-value=39 Score=32.36 Aligned_cols=103 Identities=9% Similarity=0.064 Sum_probs=62.9
Q ss_pred CCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC-------CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009665 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------YKKSIKKEACWTISNITAGNVNQIQAII 365 (529)
Q Consensus 293 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (529)
....+..+..++++++|+..........+.+......++..+... .+..++..++..+-|++....... .
T Consensus 272 ~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~ 348 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---S 348 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---S
T ss_pred CCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---c
Confidence 344567888899999999885543333333322344455544211 145678888888888886311100 0
Q ss_pred HcCCHHHHHHHHh---------cCChhHHHHHHHHHHHHhcC
Q 009665 366 EAGIIGPLVNLLL---------NAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 366 ~~~~l~~L~~~l~---------~~~~~v~~~a~~aL~nl~~~ 398 (529)
+..++..+..++. ..+.+....++.||++++..
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 0123455666665 24788889999999999863
No 173
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=43.30 E-value=2.2e+02 Score=27.00 Aligned_cols=228 Identities=12% Similarity=0.091 Sum_probs=123.5
Q ss_pred hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHHhhcCCh---
Q 009665 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDD--- 315 (529)
Q Consensus 240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~--- 315 (529)
...+-.|+.++.++|+.-+...-.+|..+-..-... ..++...+-..+..++.. ....-....+.++|.+..|..
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~-R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL 206 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL-RAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 206 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence 346677889999999999888888888765433322 223333333445555433 233446678899999887652
Q ss_pred --hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHH--HHHH
Q 009665 316 --MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE--AAWA 391 (529)
Q Consensus 316 --~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~--a~~a 391 (529)
+....+. ..|+.+-+...-...-..-+.++..+...++.....+ +..|+..- +-....++ -+.-
T Consensus 207 keehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W--P~tns~KevlFL~E 274 (403)
T 3fga_B 207 KEEHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW--PKTHSPKEVMFLNE 274 (403)
T ss_dssp CHHHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC--CSSCHHHHHHHHHH
T ss_pred hHHHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC--CCCCcHHHHHHHHH
Confidence 2222211 2233333333222233444555555554334322211 22222221 22223333 3334
Q ss_pred HHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHH-----HHHhhhhhhhcCCCCccchHHHHHHhhch
Q 009665 392 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN-----ILKAGEAEKNMGNTGGVNLFAQAIDDAEG 466 (529)
Q Consensus 392 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~-----l~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 466 (529)
|..++...++.....+.. .+...+..++.+++-.|.+.|+....| ++... ...+- --.
T Consensus 275 le~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n---------------~~~Il-Pii 337 (403)
T 3fga_B 275 LEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN---------------AAKIL-PIM 337 (403)
T ss_dssp HHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT---------------HHHHH-HHH
T ss_pred HHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHh---------------HHHHH-HHH
Confidence 555666556555544332 367788888899999988887754322 22111 11111 012
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHhhCCCCC
Q 009665 467 LEKIEN-LQSHDNTEIYEKAVKILETYWVEED 497 (529)
Q Consensus 467 ~~~l~~-L~~~~~~~v~~~a~~il~~~~~~~~ 497 (529)
...|.+ ...|=|+.|+..|..++..+-+.|.
T Consensus 338 ~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 338 FPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 344544 3678899999999999998766543
No 174
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=42.86 E-value=36 Score=31.90 Aligned_cols=103 Identities=9% Similarity=0.064 Sum_probs=62.0
Q ss_pred CCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC-------CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009665 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------YKKSIKKEACWTISNITAGNVNQIQAII 365 (529)
Q Consensus 293 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (529)
....+..+..++++++|+..+.......+.+......+...+... .+..++..++..+-|++....... .
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~ 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---S 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---S
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---c
Confidence 344567888899999999885542333332221233344433111 145688888888889886311100 0
Q ss_pred HcCCHHHHHHHHh---------cCChhHHHHHHHHHHHHhcC
Q 009665 366 EAGIIGPLVNLLL---------NAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 366 ~~~~l~~L~~~l~---------~~~~~v~~~a~~aL~nl~~~ 398 (529)
+..++..+.+++. ..+.+....++.||++++..
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 0123455666665 24788889999999999863
No 175
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=41.35 E-value=25 Score=31.15 Aligned_cols=101 Identities=9% Similarity=0.085 Sum_probs=59.9
Q ss_pred CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC-------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009665 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------YKKSIKKEACWTISNITAGNVNQIQAIIE 366 (529)
Q Consensus 294 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (529)
+..+..+..++++++|+..+.....+.+.+......+...+.+. .+..++..++..+-|++........ +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 44566888999999999886552344343332334444443211 1566888888888898862110000 0
Q ss_pred cCCHHHHHHHHhc---------CChhHHHHHHHHHHHHhc
Q 009665 367 AGIIGPLVNLLLN---------AEFEIKKEAAWAISNATS 397 (529)
Q Consensus 367 ~~~l~~L~~~l~~---------~~~~v~~~a~~aL~nl~~ 397 (529)
......+.+++.. .+.+....++.|++++..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1233445555542 366788888899999885
No 176
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=39.28 E-value=1.8e+02 Score=24.80 Aligned_cols=98 Identities=7% Similarity=-0.040 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH
Q 009665 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332 (529)
Q Consensus 253 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 332 (529)
++-++....+.+++.+....+. .+.+.+...+.+++.-++..|+..+ +.......... .++.+..
T Consensus 102 ~nWd~~D~~a~~~~~~~~~~~~--------~~~~~i~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~-----~~~i~~~ 166 (220)
T 2b6c_A 102 AWWDSVDAWRKFFGSWVALHLT--------ELPTIFALFYGAENFWNRRVALNLQ--LMLKEKTNQDL-----LKKAIIY 166 (220)
T ss_dssp CSHHHHHHHHHHHHHHHHHSGG--------GHHHHHHHHTTCSSHHHHHHHHHTT--TTCGGGCCHHH-----HHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHChH--------HHHHHHHHHHcCCCHHHHHHHHHHH--HHHHHCCCHHH-----HHHHHHH
Confidence 3445555544555555432222 2345677888888887877776544 22211112221 2444555
Q ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009665 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (529)
Q Consensus 333 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (529)
.+.++ +.-|++...|+|..++..+++....++.
T Consensus 167 ~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 167 DRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp TTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 66777 8899999999999999988887655553
No 177
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=36.18 E-value=1.1e+02 Score=24.97 Aligned_cols=77 Identities=8% Similarity=0.084 Sum_probs=56.4
Q ss_pred HHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhc
Q 009665 402 EQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 475 (529)
Q Consensus 402 ~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~ 475 (529)
.....|++.|++..+-..|.- ++..++...+.+|..+= .. .+.+.++|.-..+..|..
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP-I~---------------~e~Lk~SglGkvV~~l~k 130 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP-VK---------------TEHLKESGLGRVVIFYTK 130 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-CC---------------HHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC-CC---------------HHHHhhCCCCceeeehhc
Confidence 445667888898888888762 45678888888887651 10 556777887777777766
Q ss_pred C--CCHHHHHHHHHHHHhhCC
Q 009665 476 H--DNTEIYEKAVKILETYWV 494 (529)
Q Consensus 476 ~--~~~~v~~~a~~il~~~~~ 494 (529)
| +.++++..|..+++++..
T Consensus 131 ~~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 131 SKRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp CTTSCHHHHHHHHHHHHHHTC
T ss_pred CCcccHHHHHHHHHHHHHHHH
Confidence 5 457789999999999854
No 178
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=35.96 E-value=46 Score=24.67 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=32.5
Q ss_pred HHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhhCCC
Q 009665 458 AQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 458 ~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~~~~~ 495 (529)
.+++.+.+.-..+..|..| ++++|...|..++..+-..
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 6778888888889999876 9999999999999987653
No 179
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=35.03 E-value=91 Score=24.75 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=57.2
Q ss_pred hhHHHHHhcCChHHHHHHhccC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHH
Q 009665 316 MQTQCIINHQALPCLLDLLTQN-----YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEA 388 (529)
Q Consensus 316 ~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a 388 (529)
.....+++.|++..+...|..- ....+|.....+|.++--. ...+.++|+-..++.+-.++ .++.++.|
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~----~e~Lk~SglGkvv~~l~k~~~et~~nk~la 127 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH----KEHLVTSGVGKIVYFYSINPKESKEVRASA 127 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----HHHHHHHCHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC----HHHhhcCCCCcchhhhhcCCccCHHHHHHH
Confidence 3456788999999999999642 1567999999999998432 45667787777776666665 66788888
Q ss_pred HHHHHHHhc
Q 009665 389 AWAISNATS 397 (529)
Q Consensus 389 ~~aL~nl~~ 397 (529)
-..+...+.
T Consensus 128 ~~Li~~WsR 136 (145)
T 2xpp_A 128 KALVQKWTN 136 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776653
No 180
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=32.18 E-value=89 Score=25.03 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=50.2
Q ss_pred CHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH-HHhccCC---CCHHHHHHHHHHHHHHHH
Q 009665 369 IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-LCDLLNC---PDPRIVTVCLEGLENILK 440 (529)
Q Consensus 369 ~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL~~---~~~~v~~~~l~aL~~l~~ 440 (529)
.+..|..-+.. .++.++..|+..|-.++.+++..+-..+....++.- |..++.. .+..|+..++..|.....
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 34455555664 477888889999999999888777766665555653 6666653 234688888888876654
No 181
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=28.84 E-value=1.6e+02 Score=23.98 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=58.9
Q ss_pred hhhHHHHHhcCChHHHHHHhccC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHH
Q 009665 315 DMQTQCIINHQALPCLLDLLTQN-----YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKE 387 (529)
Q Consensus 315 ~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~ 387 (529)
......+++.|++..+...|..- ..-.+|.....+|.++--. ...+..+|+-..++-+..++ .++.+..
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~----~e~Lk~SglGkvV~~l~k~~~et~~nkrl 141 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVK----TEHLKESGLGRVVIFYTKSKRVEAQLARL 141 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----HHHHHHHSHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCCC----HHHHhhCCCCceeeehhcCCcccHHHHHH
Confidence 44566788999999999999542 1568999999999988532 34567777766666666555 6678888
Q ss_pred HHHHHHHHhc
Q 009665 388 AAWAISNATS 397 (529)
Q Consensus 388 a~~aL~nl~~ 397 (529)
|-..+...+.
T Consensus 142 a~~Li~~WsR 151 (170)
T 3nfq_A 142 AEKLIAEWTR 151 (170)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 9988888865
No 182
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=24.76 E-value=1.7e+02 Score=23.05 Aligned_cols=71 Identities=6% Similarity=-0.027 Sum_probs=49.0
Q ss_pred ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 326 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
++..+..-+... .+.-+..++.++-.++..........+..++.+.+.+.+...+..+|......+.-.-.
T Consensus 44 Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 44 FVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 344555666555 77788888888888887322233456667778888888877777888877777666653
No 183
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=23.71 E-value=4.2e+02 Score=24.17 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-Hhcc---C----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 009665 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQ---N----YKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~---~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 370 (529)
+++..++.+.......+.. +. +....+|.|+. +|.+ . .++++-.....++..+...-.+.+..++++ ++
T Consensus 45 vKkeiLkLiet~i~~~~d~-~~-v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~-VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDP-QM-VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA-VF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCH-HH-HHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHcCCCH-HH-HHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HH
Confidence 5566677776666544322 22 22356666664 3311 1 134444444444444444333334444443 55
Q ss_pred HHHHHHHhc---CChhHHHHHHHHHHHHhcCC-------CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 009665 371 GPLVNLLLN---AEFEIKKEAAWAISNATSGG-------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 371 ~~L~~~l~~---~~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~ 440 (529)
..=++++.. +-|+.|.+=...|.++..++ ++++.+. +++.++-..++++++|...++.++..++.
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 555666664 36778877666666665543 3333333 45667777889999999999999998887
Q ss_pred hhhhhhhcCCCCccchHHHHHHhhchHHHHHH----HhcCCCHHHHHHHHHHHHhhCC
Q 009665 441 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN----LQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~----L~~~~~~~v~~~a~~il~~~~~ 494 (529)
.-.+.. .+...|-+.-.++.+.+ +......--...-..+|..+|.
T Consensus 197 n~~~~~---------~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 197 NVAQEE---------AAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp HHHHCH---------HHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHhcCh---------HHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 654311 12333333333444443 3444433334444566666664
No 184
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.55 E-value=71 Score=19.57 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=12.8
Q ss_pred HHHhhhHHHHHHHHHHhhH
Q 009665 24 EGRRRREDNMVEIRKNKRE 42 (529)
Q Consensus 24 e~r~~r~~~~~~lRk~~r~ 42 (529)
+.|++.++-...+||.++.
T Consensus 11 ~~Rkk~eeler~lrk~kk~ 29 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKK 29 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467777777778776543
No 185
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.72 E-value=6.8e+02 Score=26.26 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=62.1
Q ss_pred cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhcc--CCchhHHHHHHHHHHHHhc---CCH
Q 009665 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--NYKKSIKKEACWTISNITA---GNV 358 (529)
Q Consensus 284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~v~~~a~~~L~nl~~---~~~ 358 (529)
+.+.+...+-+.+..+...+..++.+++.-.+.....++. ++++.+...|.. -..+.-...|+.++..++. ..+
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 4455555567788888899999999999866633333333 566777777766 2144444455666665553 111
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
.....+.. ++..++.-++..|+.--..+...+..++.
T Consensus 419 ~yr~hl~~--lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 419 LYRVHITN--VLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TGGGHHHH--HHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH--HHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 11112221 23333333344465555556666666654
No 186
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=22.34 E-value=84 Score=21.23 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhCCCCCC
Q 009665 479 TEIYEKAVKILETYWVEEDE 498 (529)
Q Consensus 479 ~~v~~~a~~il~~~~~~~~~ 498 (529)
++|++.+..-++.||+.+++
T Consensus 50 ~~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 50 EDIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHhCccccC
Confidence 36778888999999997654
No 187
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=22.02 E-value=3.5e+02 Score=22.63 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=78.0
Q ss_pred ChHHHHHHhccc-----hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC---ChHHHHHHHHHHHHhccC
Q 009665 200 ALMPLLAQFNEH-----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDG 271 (529)
Q Consensus 200 ~i~~l~~~l~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~L~~l~~~ 271 (529)
.+|.++..+... .+.............|..+..-....+...++|.++.++-.. ...+|..|...+..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 466666665321 256677777888888888875555667788888887776432 237999999999999854
Q ss_pred CchhHHHHHHhCcHHHHHHhcCCCC--cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc
Q 009665 272 TNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 335 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~L~~lL~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 335 (529)
...... -+...++..+.+.+.+++ ......|+..|..+.. + .+..-++|.+-.+.+
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~--~-----~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK--N-----VVNTVIREHAEEYKR 178 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH--H-----HHHTHHHHHHHHHHH
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH--H-----HHHHhhhcCHHHHHH
Confidence 222111 223456667777766654 3445556666666543 2 222234455555553
No 188
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=21.51 E-value=3.8e+02 Score=22.89 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=82.1
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHH-HHHHHhhCCCchhHHH
Q 009665 118 RFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAV-WALGNVAGDSPKCRDL 194 (529)
Q Consensus 118 ~Li~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~-~~L~nl~~~~~~~~~~ 194 (529)
.+..+..++. .+.+..|+..+..... .+++ .++.+-.++.. .+..+....+ .+++.+....+.
T Consensus 65 ~~~~L~~~~~-~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~---- 130 (232)
T 3jxy_A 65 IIRELWDLPE-REFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE---- 130 (232)
T ss_dssp HHHHHHTSSB-HHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG----
T ss_pred HHHHHhcCcH-HHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH----
Confidence 4455666665 7788888877765432 1122 23333444433 5666665542 455555433322
Q ss_pred HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch
Q 009665 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (529)
Q Consensus 195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~ 274 (529)
...+.+...+ .+.+.-+++.++-.+.. .. ........++.+...+.+++.-|+..+.|+|..++...++
T Consensus 131 ----~~~~~l~~W~-~s~~~w~rR~ai~~~l~--~~----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~ 199 (232)
T 3jxy_A 131 ----LISAYIPKWI-ASDNIWLQRAAILFQLK--YK----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD 199 (232)
T ss_dssp ----GGGGTHHHHH-HSSCHHHHHHHHHTTTT--CG----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred ----HHHHHHHHHh-cCCchHHHHHHHHHHHH--HH----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 1234455555 66677777777654322 11 1111234556667778888999999999999999988777
Q ss_pred hHHHHHHh
Q 009665 275 KIQAVIEA 282 (529)
Q Consensus 275 ~~~~~~~~ 282 (529)
....+++.
T Consensus 200 ~v~~fl~~ 207 (232)
T 3jxy_A 200 VVWEYVQN 207 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66656554
No 189
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=21.31 E-value=62 Score=25.96 Aligned_cols=74 Identities=5% Similarity=-0.025 Sum_probs=46.6
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHH-HHHhhcCC--CChHHHHHHHHHHHHHhc
Q 009665 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR-FIEFLSRD--DFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~-Li~lL~~~--~~~~v~~~a~~~L~~l~~ 144 (529)
+.+..|.+.|++ .++.++..|+..|-.+..+-......++....++.. |++++... ....++..++..+...+.
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 356777777774 577778888887777766543333344444445543 56666532 214688888888888775
Done!