BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009666
(529 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VE65|TAF12_MOUSE Transcription initiation factor TFIID subunit 12 OS=Mus musculus
GN=Taf12 PE=1 SV=1
Length = 161
Score = 132 bits (331), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 79/104 (75%)
Query: 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAK 458
N++LTK+ +Q+LV ++DP+E+LD DVE++L+ IA+DF+ES+ C LA+HRKS TLE K
Sbjct: 55 NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114
Query: 459 DILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAVSFT 502
D+ +HLER WNM +PGF +EI+ ++K + HK+R+A + T
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 158
>sp|Q3T174|TAF12_BOVIN Transcription initiation factor TFIID subunit 12 OS=Bos taurus
GN=TAF12 PE=2 SV=1
Length = 161
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 79/104 (75%)
Query: 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAK 458
N++LTK+ +Q+LV ++DP+E+LD DVE++L+ IA+DF+ES+ C LA+HRKS TLE K
Sbjct: 55 NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114
Query: 459 DILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAVSFT 502
D+ +HLER WNM +PGF +EI+ ++K + HK+R+A + T
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 158
>sp|Q16514|TAF12_HUMAN Transcription initiation factor TFIID subunit 12 OS=Homo sapiens
GN=TAF12 PE=1 SV=1
Length = 161
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 79/104 (75%)
Query: 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAK 458
N++LTK+ +Q+LV ++DP+E+LD DVE++L+ IA+DF+ES+ C LA+HRKS TLE K
Sbjct: 55 NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114
Query: 459 DILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAVSFT 502
D+ +HLER WNM +PGF +EI+ ++K + HK+R+A + T
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 158
>sp|Q555L9|TAF12_DICDI Transcription initiation factor TFIID subunit 12 OS=Dictyostelium
discoideum GN=TAF12 PE=3 SV=2
Length = 627
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Query: 400 RILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKD 459
+L KR + EL+ QI P+E++D D EDIL +A+DFVES F C+LAKHR S TLE KD
Sbjct: 440 EVLGKRKLIELLQQISPNEKMDEDAEDILSVLADDFVESTVAFACTLAKHRNSTTLEVKD 499
Query: 460 ILVHLERNWNMTLPGFSG-DEIKTFRKPLVCDIHKERLAAV 499
+ HLE+NWN+ +PGF ++ KTF+KP + HK R+AA+
Sbjct: 500 LQCHLEKNWNIRVPGFGNVEQYKTFKKPHFPENHKLRVAAM 540
>sp|Q03761|TAF12_YEAST Transcription initiation factor TFIID subunit 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF12 PE=1
SV=1
Length = 539
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 69/91 (75%), Gaps = 5/91 (5%)
Query: 400 RILTKRSIQELVNQI-----DPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDT 454
R+++KR ++ELV + D +D DVE++L+D+A+DFV ++T F C LAKHRKSD
Sbjct: 413 RVMSKRKLRELVKTVGIDEGDGETVIDGDVEELLLDLADDFVTNVTAFSCRLAKHRKSDN 472
Query: 455 LEAKDILVHLERNWNMTLPGFSGDEIKTFRK 485
LEA+DI +HLERNWN+ +PG+S DEI++ RK
Sbjct: 473 LEARDIQLHLERNWNIRIPGYSADEIRSTRK 503
>sp|Q91858|TAF12_XENLA Transcription initiation factor TFIID subunit 12 OS=Xenopus laevis
GN=taf12 PE=2 SV=1
Length = 164
Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 81/113 (71%)
Query: 390 AGTESDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKH 449
G + N++L+K+ + +LV ++DP+E+LD DVE++L+ IA+DF+ES+ C LA+H
Sbjct: 49 GGGRASPEANQVLSKKKLHDLVREVDPNEQLDEDVEEMLLQIADDFIESVVSAACQLARH 108
Query: 450 RKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAVSFT 502
RKS+TLE KD+ +HLER WNM +PGF +EI+ ++K + HK+R+A + T
Sbjct: 109 RKSNTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIKKT 161
>sp|O13722|TAF12_SCHPO Transcription initiation factor TFIID subunit 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf12 PE=1 SV=1
Length = 450
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Query: 398 GNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEA 457
GNR+L+KR + +L+ QID E+++P+VE++L++IA++FVES+T F C LAKHRKSDTL+
Sbjct: 339 GNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTLDV 398
Query: 458 KDILVHLERNWNMTLPGFSGDEI-KTFRK 485
+D+ +HLERNWN+ LPGF+ D+I K+ RK
Sbjct: 399 RDVQLHLERNWNIRLPGFASDDIVKSARK 427
>sp|P49905|TAF12_DROME Transcription initiation factor TFIID subunit 12 OS=Drosophila
melanogaster GN=Taf12 PE=1 SV=1
Length = 196
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 70/103 (67%)
Query: 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESITMFGCSLAKHRKSDTLEAKDI 460
+LTK + ELV ++D + +LD DVE++L+ I +DFVE + AKHRKS+ +E +D+
Sbjct: 91 MLTKPRLTELVREVDTTTQLDEDVEELLLQIIDDFVEDTVKSTSAFAKHRKSNKIEVRDV 150
Query: 461 LVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAVSFTL 503
+H ER +NM +PGF DE++ +++ V + HK+RLA + T+
Sbjct: 151 QLHFERKYNMWIPGFGTDELRPYKRAAVTEAHKQRLALIRKTI 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,043,209
Number of Sequences: 539616
Number of extensions: 11533528
Number of successful extensions: 236342
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2365
Number of HSP's successfully gapped in prelim test: 5329
Number of HSP's that attempted gapping in prelim test: 78204
Number of HSP's gapped (non-prelim): 61873
length of query: 529
length of database: 191,569,459
effective HSP length: 122
effective length of query: 407
effective length of database: 125,736,307
effective search space: 51174676949
effective search space used: 51174676949
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)